RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013619
(439 letters)
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 525 bits (1353), Expect = 0.0
Identities = 316/374 (84%), Positives = 345/374 (92%)
Query: 66 DPKSKTNDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPD 125
+ + DC+GVFC TYDLKAE++TKSWKK+VNIAVSGAAGMI+NHLLFKLA+GEV G D
Sbjct: 2 EAPATRKDCFGVFCTTYDLKAEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQD 61
Query: 126 QPIALKLLGSERSLQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRG 185
QPIALKLLGSERS QALEGVAMELEDSL+PLLREV IGI+PYE+FED +WALLIGAKPRG
Sbjct: 62 QPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRG 121
Query: 186 PGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFH 245
PGMERA LLDINGQIFA+QGKALNAVAS+NVKV+VVGNPCNTNALICLKNAP IPAKNFH
Sbjct: 122 PGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFH 181
Query: 246 ALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHK 305
ALTRLDENRAKCQLALKAGVFYDKVSN+TIWGNHSTTQVPDFLNA+I+G PVKE+IK K
Sbjct: 182 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK 241
Query: 306 WLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNP 365
WLEE FT T+QKRGG LI+KWGRSSAASTAVSI DA+KSLVTPTPEGDWFS+GVYT GNP
Sbjct: 242 WLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 301
Query: 366 YGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIA 425
YGIAEDIVFSMPCRSKGDGDYEL DV DD+L +RI K+E ELLAEKKCVAHLTGEG A
Sbjct: 302 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLAEKKCVAHLTGEGNA 361
Query: 426 FCDLPEDTMLPGEM 439
+CD+PEDTMLPGE+
Sbjct: 362 YCDVPEDTMLPGEV 375
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 440 bits (1134), Expect = e-155
Identities = 154/330 (46%), Positives = 218/330 (66%), Gaps = 5/330 (1%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALEGVAMELED 151
K + +AV+GAAG I LLF++A G++LG DQP+ L+LL +E++ +AL+GV ME++D
Sbjct: 3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD 62
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
FPLL + +P F+DA+ ALL+GA+PRGPGMER LL+ N QIF QGKA++AV
Sbjct: 63 CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
ASRN+KV+VVGNP NTNA I +K+APS+PAKNF A+ RLD NRA Q+A K G +
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIE 182
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA 331
+ +WGNHS T D+ A+I+G VK++I D W + F T+ KRG +I G SSA
Sbjct: 183 KLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSA 242
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
AS A + +D + V T G W + G+ ++G YGI E ++F P ++ +G+Y++V+
Sbjct: 243 ASAANAAIDHIHDWVLGTA-GKWTTMGIPSDG-SYGIPEGVIFGFPVTTE-NGEYKIVQG 299
Query: 392 VIFDDYLRKRIAKTEQELLAEKKCVAHLTG 421
+ D + ++RI T ELL E+ V HL G
Sbjct: 300 LSIDAFSQERINVTLNELLEEQNGVQHLLG 329
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 439 bits (1131), Expect = e-154
Identities = 163/326 (50%), Positives = 221/326 (67%), Gaps = 3/326 (0%)
Query: 94 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSL 153
K V +AV+GAAG I LLF++AAGE+LG DQP+ L+LL ++++ALEGV MELED
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 154 FPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVAS 213
FPLL ++ +P F+DA++ALL+GA PR GMER LL +NG+IF EQG+AL VA
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 214 RNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNM 273
++VKV+VVGNP NTNALI KNAP + +NF A+TRLD NRAK QLA K G D++ M
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 274 TIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAAS 333
T+WGNHS+T PD +A ++G P E++ D +W E+ F T+ +RG +I+ G SSAAS
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAAS 240
Query: 334 TAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDVI 393
A + ++ ++ TPEGDW S V + G YGI E IV+S P +K DG Y +V+ +
Sbjct: 241 AANAAIEHIRDWALGTPEGDWVSMAVPSQG-EYGIPEGIVYSFPVTAK-DGAYRVVEGLE 298
Query: 394 FDDYLRKRIAKTEQELLAEKKCVAHL 419
+++ RKR+ T QELL E + V L
Sbjct: 299 INEFARKRMEITAQELLDEMEQVKAL 324
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 430 bits (1107), Expect = e-150
Identities = 143/327 (43%), Positives = 201/327 (61%), Gaps = 5/327 (1%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLFPL 156
+ + V+GAAG IA LL+ + G V G DQPI L LL + L+GV MEL+D PL
Sbjct: 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 157 LREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNV 216
L++V F+D + A+L+G+ PR GMER LL N +IF QG AL+ A ++V
Sbjct: 64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV 123
Query: 217 KVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 276
KVIVVGNP NTN L K+APSIP +NF LTRLD NRAK Q+ALK GV D V N+ IW
Sbjct: 124 KVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIW 183
Query: 277 GNHSTTQVPDFLNARINGLP----VKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSAA 332
GNHS+TQ PD +A++ V E +KD WL+ F T+Q+RG +IK SSA
Sbjct: 184 GNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSSAM 243
Query: 333 STAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKDV 392
S A +I D ++ + TPEG++ S G+ ++GN YG+ +D+++S P D +++V+ +
Sbjct: 244 SAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGL 302
Query: 393 IFDDYLRKRIAKTEQELLAEKKCVAHL 419
+D+ R+++ T +EL EK+
Sbjct: 303 PINDFSREKMDLTAKELAEEKETAFEF 329
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 288 bits (740), Expect = 5e-95
Identities = 80/328 (24%), Positives = 136/328 (41%), Gaps = 17/328 (5%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GAAGMI +++ A L P+ L L + LEGVA E+ F
Sbjct: 7 TEEKLTIVGAAGMIGSNMAQTAAMMR-LTPN----LCLY--DPFAVGLEGVAEEIRHCGF 59
Query: 155 PLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
L + + E DA++ + G PR GM R LL N +I A+ GK + +
Sbjct: 60 EGLN-LTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 215 NVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMT 274
VI++ NP + L+ L + + L LD R + +LA G+ V+N
Sbjct: 119 CKHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTR 177
Query: 275 IWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG---FTETIQKRGGLLIKKWGRSSA 331
+G H A++NG P+ ++I K E + + K G +IK GRSS
Sbjct: 178 TYGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSF 237
Query: 332 ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKGDGDYELVKD 391
S + ++ +++ + + +G Y N G E I+ +M DG +
Sbjct: 238 QSPSYVSIEMIRAAMGGEAF--RWPAGCYVNV--PGF-EHIMMAMETTITKDGVKHSDIN 292
Query: 392 VIFDDYLRKRIAKTEQELLAEKKCVAHL 419
+ ++ R + ++ L + V +
Sbjct: 293 QLGNEAERAALKESYSHLAKLRDEVIAM 320
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 71.8 bits (177), Expect = 5e-14
Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 27/250 (10%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIF 201
G A++L + + K+ G N Y+ E+++ ++ PR PGM R LL IN ++
Sbjct: 43 NGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVM 102
Query: 202 AEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQL 259
G+ + N VI + NP + + K + +P N LD R + L
Sbjct: 103 QTVGEGIKHNCP-NAFVICITNPLDIMVNMLQKFS-GVP-DNKIVGMAGVLDSARFRTFL 159
Query: 260 ALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ--- 316
A + V +V + G H T VP + + G+ +++++K+ K +E +
Sbjct: 160 ADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTR 218
Query: 317 KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGI 368
GG ++ SA A+ + + ++ K ++ YG+
Sbjct: 219 SGGGEIVALLKTGSAYYAPAAAGIQMAESFLKDKKMILP---------CAAKVKAGMYGL 269
Query: 369 AEDIVFSMPC 378
ED+ +P
Sbjct: 270 DEDLFVGVPT 279
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 68.7 bits (169), Expect = 4e-13
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 39/270 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A K L E L +G A+++ +S L + K+ G N Y +++ ++I
Sbjct: 19 LAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSD--IVIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N I E + + N +IVV NP + + +
Sbjct: 77 AGL-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRS-G 133
Query: 239 IPAKN--FHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLP 296
+P K LD R + +A++ GV ++ + G H VP + G+P
Sbjct: 134 LP-KERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL-GGHGDAMVPVVKYTTVAGIP 191
Query: 297 VKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTP 348
+ +++ +++ T + G +++ + SA AS+ V +V+++ K ++
Sbjct: 192 ISDLLPAET-IDKLVERT-RNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLP- 248
Query: 349 TPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
V G YGI + +P
Sbjct: 249 --------CAVGLEGQ-YGI-DKTFVGVPV 268
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 68.7 bits (169), Expect = 4e-13
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 32/249 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++ +V++ G N Y +++ +++ GA PR PGM R L+ +N
Sbjct: 40 QGKALDLYEASPIEGFDVRVTGTNNYADTANSD--VIVVTSGA-PRKPGMSREDLIKVNA 96
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
I ++ N +I+V NP + + + + P + LD R +
Sbjct: 97 DITRACISQAAPLSP-NAVIIMVNNPLDAMTYLAAEVS-GFPKERVIGQAGVLDAARYRT 154
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A++AGV + V M + G H VP + I+G+PV E I + L + T +K
Sbjct: 155 FIAMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISGIPVSEFIAPDR-LAQIVERT-RK 211
Query: 318 RGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIA 369
GG ++ SA A+ +V+A+ K ++ Y G YG+
Sbjct: 212 GGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMP---------VAAYLTGQ-YGL- 260
Query: 370 EDIVFSMPC 378
DI F +P
Sbjct: 261 NDIYFGVPV 269
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 69.1 bits (170), Expect = 4e-13
Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + + KI G N YE ++++ ++I G PR P M R+ LL +N
Sbjct: 52 QGKALDLNHCMALIGSPAKIFGENNYEYLQNSD--VVIITAGV-PRKPNMTRSDLLTVNA 108
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + + + IP N LD R +
Sbjct: 109 KIVGSVAENV-GKYCPNAFVICITNPLDAMVYYFKEKS-GIP-ANKVCGMSGVLDSARFR 165
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
C L+ GV VS + + G H +P + I G+ + + ++ K E I+
Sbjct: 166 CNLSRALGVKPSDVSAIVV-GGHGDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIK 224
Query: 317 K-R--GGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
K GG +++ SA A++AV++ A KS++ Y G
Sbjct: 225 KTAFGGGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLV---------CSTYLTGQ- 274
Query: 366 YGIAEDIVFSMPC 378
Y + ++ +P
Sbjct: 275 YNV-NNLFVGVPV 286
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 68.7 bits (169), Expect = 5e-13
Identities = 51/249 (20%), Positives = 101/249 (40%), Gaps = 32/249 (12%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ ++ + I G + Y D++ +++ G R PGM R L+ N
Sbjct: 48 KGKALDMLEASPVQGFDANIIGTSDYADTADSD--VVVITAGI-ARKPGMSRDDLVATNS 104
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPA-KNFHALTRLDENRAKC 257
+I + + + N ++V+ NP + K A P + LD R +
Sbjct: 105 KIMKSITRDIAKHSP-NAIIVVLTNPVDAMTYSVFKEA-GFPKERVIGQSGVLDTARFRT 162
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQK 317
+A + + ++ + G H VP + G+P++ +I + LE T +K
Sbjct: 163 FIAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGGIPLETLIPKER-LEAIVERT-RK 219
Query: 318 RGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIA 369
GG ++ G SA A++ V + +A+ + ++ + Y G YG
Sbjct: 220 GGGEIVGLLGNGSAYYAPAASLVEMTEAILKDQRRVLP---------AIAYLEGE-YGY- 268
Query: 370 EDIVFSMPC 378
D+ +P
Sbjct: 269 SDLYLGVPV 277
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 68.3 bits (168), Expect = 5e-13
Identities = 64/295 (21%), Positives = 119/295 (40%), Gaps = 39/295 (13%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
+ + GA+G + A L + +++ L+G E S+ LEG+ ++ D+L
Sbjct: 3 VTIIGASGRVGSATALLLAKEPFMKDLV---------LIGREHSINKLEGLREDIYDALA 53
Query: 155 PLLREVKI---GINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
+ I + ++++ ++ PR GM R L N +I + K
Sbjct: 54 GTRSDANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAK--KIA 111
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ K+ V+ NP + L ++ + F T LD R K +A GV D+V
Sbjct: 112 EICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIK-DHKWLEEGFTETIQKRGGLLIKKWGRSS 330
I G H + VP I G+P+++ + ++E + + +G +I+ G S
Sbjct: 172 TRII-GEHGDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDV-KTKGEQIIRLKG-GS 228
Query: 331 A---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
A+ +++V + K L+T Y +G GI D+ +P
Sbjct: 229 EFGPAAAILNVVRCIVNNEKRLLT---------LSAYVDGEFDGI-RDVCIGVPV 273
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 67.2 bits (165), Expect = 1e-12
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 29/247 (11%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L + L +++I G N YE ++ +++ G R PGM R LL+ N
Sbjct: 37 QGEALDLAHAAAELGVDIRISGSNSYEDMRGSD--IVLVTAGI-GRKPGMTREQLLEANA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
A+ + + A A + V++ NP + + K + LD R
Sbjct: 94 NTMADLAEKIKAYAK-DAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYY 152
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
++ K GV + V+ + + G H P + + G+P++ ++ + +EE +ET
Sbjct: 153 ISQKLGVSFKSVNAIVL-GMHGQKMFPVPRLSSVGGVPLEHLMSKEE-IEEVVSET-VNA 209
Query: 319 GGLLIKKWGRSSA---ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAED 371
G + + G SS A+ V V+A+ K + +Y G YG D
Sbjct: 210 GAKITELRGYSSNYGPAAGLVLTVEAIKRDSKRIYP---------YSLYLQGE-YGY-ND 258
Query: 372 IVFSMPC 378
IV +P
Sbjct: 259 IVAEVPA 265
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 66.8 bits (164), Expect = 2e-12
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 36/268 (13%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI-- 179
+A + + E + +G A+++ +S + ++ G N Y ED++ + I
Sbjct: 19 VARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSD--VCIIT 76
Query: 180 -GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPS 238
G PR PGM R LL N +I + + + +IVV NP + + + +
Sbjct: 77 AGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIVVANPLDVMTYVAYEAS-G 133
Query: 239 IPA-KNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV 297
P + LD R + +A + V V + + G H T VP + G+PV
Sbjct: 134 FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLM-GGHGDTMVPLPRYTTVGGIPV 192
Query: 298 KEIIKDHKWLEEGFTETIQKRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTP 350
++I D + +EE T + GG ++ G S+ + A + +A+ K ++
Sbjct: 193 PQLIDDAR-IEEIVERT-KGAGGEIVDLMGTSAWYAPGAAAAEMTEAILKDNKRILP--- 247
Query: 351 EGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
Y +G YG+ +D+ +P
Sbjct: 248 ------CAAYCDGE-YGL-DDLFIGVPV 267
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 66.8 bits (164), Expect = 2e-12
Identities = 54/253 (21%), Positives = 104/253 (41%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G +++ +S + K G N Y E A+ ++I G PR PGM R LL IN
Sbjct: 45 QGKGLDIAESSPVDGFDAKFTGANDYAAIEGAD--VVIVTAGV-PRKPGMSRDDLLGINL 101
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
++ + G + A VI + NP + K + +P + LD R +
Sbjct: 102 KVMEQVGAGIKKYAP-EAFVICITNPLDAMVWALQKFS-GLP-AHKVVGMAGVLDSARFR 158
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ + V + V+ + G H + VP + + G+P+ +++K ++ + IQ
Sbjct: 159 YFLSEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQ 217
Query: 317 ---KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
G ++ SA A++A+ + ++ K ++ +G
Sbjct: 218 RTRDGGAEIVGLLKTGSAFYAPAASAIQMAESYLKDKKRVLP---------VAAQLSGQ- 267
Query: 366 YGIAEDIVFSMPC 378
YG+ +D+ +P
Sbjct: 268 YGV-KDMYVGVPT 279
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 65.3 bits (160), Expect = 6e-12
Identities = 74/350 (21%), Positives = 119/350 (34%), Gaps = 65/350 (18%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+AV GA+G I L L L S +L GVA +L
Sbjct: 3 VAVLGASGGIGQPLSLLLK------------NSPLVSRLTLYDIAHTPGVAADLSHIETR 50
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + + + ++ PR PGM R L + N I A A A
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAAC-AQHCP 109
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
+ + ++ NP N+ K +T LD RA +A G+ +VS
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVS 169
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK-KWGRSS 330
I G+ T +P ++ + T IQ+ G ++K K G S
Sbjct: 170 VPVIGGHAGKTIIPLISQCTPKVDFPQDQL-------STLTGRIQEAGTEVVKAKAGAGS 222
Query: 331 A--------ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCR 379
A A S+VDAM + +V + + S PY FS P
Sbjct: 223 ATLSMAYAGARFVFSLVDAMNGKEGVVECS----FVKSQET--DCPY-------FSTPLL 269
Query: 380 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG---EGIAF 426
G + K++ I+ E++++ + + L +G F
Sbjct: 270 L---GKKGIEKNLGIGK-----ISPFEEKMI--AEAIPELKASIKKGEEF 309
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 64.4 bits (158), Expect = 1e-11
Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 35/253 (13%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A+++ S+ K+ G + Y ++ ++I P P +R+ LL N
Sbjct: 42 QGKALDITHSMVMFGSTSKVIGTDDYADISGSD--VVIITASI-PGRPKDDRSELLFGNA 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
+I + + N VI + NP + K + +P N LD +R +
Sbjct: 99 RILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVS-GLP-HNKVCGMAGVLDSSRFR 155
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A GV VS I G H VP + + G+P+ IK +E E +
Sbjct: 156 TFIAQHFGVNASDVSANVI-GGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVC 214
Query: 317 K-R--GGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
R + +A A+ AV + +A K++V + + +
Sbjct: 215 HTRIAWKEVADNLKTGTAYFAPAAAAVKMAEAYLKDKKAVVP---------CSAFCSNH- 264
Query: 366 YGIAEDIVFSMPC 378
YG+ + I +P
Sbjct: 265 YGV-KGIYMGVPT 276
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 63.7 bits (156), Expect = 2e-11
Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 32/251 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++L ++L P KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 47 TKGDAIDLSNAL-PFTSPKKIYSAEYSDAKDAD--LVVITAGA-PQKPGETRLDLVNKNL 102
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+I + N +V NP + K + + + T LD R +
Sbjct: 103 KILKSIVDPIVDS-GFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQS 161
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
+A V V + G H T+ P + +A I G+ + E +K H ++E + +
Sbjct: 162 IAEMVNVDARSVHAYIM-GEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFED 220
Query: 319 ----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 367
+IK G + A+ I A+ ++ V P VY +G YG
Sbjct: 221 VRDAAYEIIKLKG--ATFYGIATALARISKAILNDENAVLPL--------SVYMDGQ-YG 269
Query: 368 IAEDIVFSMPC 378
+ DI P
Sbjct: 270 L-NDIYIGTPA 279
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 63.3 bits (155), Expect = 3e-11
Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
EG A++L P R I Y + ++ ++I G P+ PG R LL N
Sbjct: 38 AEGDALDLIHGT-PFTRRANIYAGDYADLKGSD--VVIVAAGV-PQKPGETRLQLLGRNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
++ E + ++ + + VIVV NP + LK + P K F + T LD R +
Sbjct: 94 RVMKEIARNVSKY-APDSIVIVVTNPVDVLTYFFLKESGMD--PRKVFGSGTVLDTARLR 150
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
+A G V I G H ++VP + A I G+P++ + + + + E
Sbjct: 151 TLIAQHCGFSPRSVHVYVI-GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFA 209
Query: 317 KR----GGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
++ +I++ G + A + A IV+++ K ++T VY
Sbjct: 210 EKTKRAAYEIIERKGATHYAIALAVA-DIVESIFFDEKRVLT---------LSVYLEDY- 258
Query: 366 YGIAEDIVFSMPC 378
G+ +D+ S+P
Sbjct: 259 LGV-KDLCISVPV 270
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 63.1 bits (154), Expect = 3e-11
Identities = 56/312 (17%), Positives = 99/312 (31%), Gaps = 42/312 (13%)
Query: 80 LTYDLKAEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSE 136
L L +E +S+ K I V A GM A +L K A E +AL + +
Sbjct: 8 LIGHLATSQEPRSYNK---ITVVGCDAVGMADAISVLMKDLADE-------VALVDVMED 57
Query: 137 RSLQALEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLIGAKPRGPGMERAGLLD 195
+ L+G M+LE L KI Y + ++ ++ + G R L+
Sbjct: 58 K----LKGEMMDLEHGS-LFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQ 112
Query: 196 INGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRA 255
N IF + S + + K + + + LD R
Sbjct: 113 RNVNIFKFIIPNIVKH-SPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARF 171
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEE-GFTET 314
+ + + GV V I G H + + L + ++ ++ G+T
Sbjct: 172 RYLMGERLGVHSCLVIGWVI-GQHGDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTS- 229
Query: 315 IQKRGGLLIKKWGRSSA-----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPY 366
GL++ + + + V P Y
Sbjct: 230 --WAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPV--------STMVKDF-Y 278
Query: 367 GIAEDIVFSMPC 378
GI +++ S+PC
Sbjct: 279 GIKDNVFLSLPC 290
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 63.3 bits (155), Expect = 3e-11
Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 37/255 (14%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
L+G M+L+ L + Y + +++ L+I GA + G R L+ N
Sbjct: 57 LKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSK--LVIITAGA-RQQEGESRLNLVQRNV 113
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKN--FHALTRLDENR 254
IF + S K+++V NP + + K + P KN + LD R
Sbjct: 114 NIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFP----KNRVIGSGCNLDSAR 168
Query: 255 AKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW------LE 308
+ + + GV + G H + VP + + G+ +K + +
Sbjct: 169 FRYLMGERLGVHPLSCHGWVL-GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWK 227
Query: 309 EGFTETIQKRGGLLIKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNG 363
+ + + +IK G +S A + + +++ V P G
Sbjct: 228 DVHKQVVDS-AYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPI--------STMIKG 278
Query: 364 NPYGIAEDIVFSMPC 378
YGI ED+ S+PC
Sbjct: 279 L-YGIKEDVFLSVPC 292
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 62.5 bits (153), Expect = 5e-11
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 24/213 (11%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ A ++ + P+ ++ + DA+ ++I GA + PG R LL+ N
Sbjct: 38 AQAEAEDIAHAA-PVSHGTRVWHGGHSELADAQ--VVILTAGA-NQKPGESRLDLLEKNA 93
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAK 256
IF E + + + ++V NP + + + AP + T LD R +
Sbjct: 94 DIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP----GQPVIGSGTVLDSARFR 148
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIK------DHKWLEEG 310
+A AGV + G H ++V + +A + G+PV + ++ + + +
Sbjct: 149 HLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKI 207
Query: 311 FTETIQKRGGLLIKKWGRSS--AASTAVSIVDA 341
T +I+ + + I +A
Sbjct: 208 DEGTRNA-AASIIEGKRATYYGIGAALARITEA 239
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 62.3 bits (152), Expect = 7e-11
Identities = 67/347 (19%), Positives = 114/347 (32%), Gaps = 59/347 (17%)
Query: 99 IAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSL---QALEGVAMELEDSLFP 155
+A+ GAAG I L + + L S L GV ++
Sbjct: 11 VAILGAAGGIGQPLAMLMK------------MNPLVSVLHLYDVVNAPGVTADISHMDTG 58
Query: 156 LLREVKIGI-NPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQGKALNAVASR 214
+ +G + ++ PR PGM R L IN I + + A
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGI-AKCCP 117
Query: 215 NVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 271
V ++ NP N+ A K A + K +T LD RA +A G+ V
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 272 NMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIK-KWGRSS 330
+ G+ T +P ++ + + T+ IQ G +++ K G S
Sbjct: 178 VPVVGGHAGVTILP-----LLSQVKPPSSFTQEEI--SYLTDRIQNGGTEVVEAKAGAGS 230
Query: 331 A--------ASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPCRSKG 382
A A + + ++ E + SS V P+ F+ R
Sbjct: 231 ATLSMAYAAVKFADACLRGLRG-DAGVIECAFVSSQVT--ELPF-------FASKVRL-- 278
Query: 383 DGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTG---EGIAF 426
G + + + + E+ L +K L G +G++F
Sbjct: 279 -GRNGIEEVYSLGP-----LNEYERIGL--EKAKKELAGSIEKGVSF 317
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 61.7 bits (151), Expect = 9e-11
Identities = 51/271 (18%), Positives = 96/271 (35%), Gaps = 38/271 (14%)
Query: 128 IALKLLGSERSL-----QALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI--- 179
+AL + E L + + A ++ + P V + Y E A ++
Sbjct: 19 LALLGVAREVVLVDLDRKLAQAHAEDILHAT-PFAHPVWVWAGSYGDLEGAR--AVVLAA 75
Query: 180 GAKPRGPGMERAGLLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSI 239
G + PG R LLD N Q+FA+ + + ++V NP + + +
Sbjct: 76 GV-AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYALSGLP 133
Query: 240 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKE 299
P + + T LD R + LA V V + G H ++V + +A++ G+P+ E
Sbjct: 134 PGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQVGGVPLLE 192
Query: 300 IIKDHKW------LEEGFTETIQKRGGLLIKKWGRSS---AASTAVSIVDAM---KSLVT 347
+ + +I+ G + A A +V A+ + V
Sbjct: 193 FAEARGRALSPEDRARIDEGVRRA-AYRIIEGKGATYYGIGAGLA-RLVRAILTDEKGVY 250
Query: 348 PTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
+T G+ ++ S+P
Sbjct: 251 TV--------SAFTPE-VAGV-LEVSLSLPR 271
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 61.0 bits (149), Expect = 1e-10
Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 35/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G M+L + VK YE +DA+ ++ GA + PG R L++ N
Sbjct: 43 AMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDAD--IVCICAGA-NQKPGETRLELVEKNL 99
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRAK 256
+IF + A + +V NP + K + P + + T LD R +
Sbjct: 100 KIFKGIVSEVMAS-GFDGIFLVATNPVDILTYATWKFSGLP--KERVIGSGTTLDSARFR 156
Query: 257 CQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ 316
L+ G V I G H T++P + +A + G+PV E+++ + ++ + I
Sbjct: 157 FMLSEYFGAAPQNVCAHII-GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIV 215
Query: 317 KR----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNP 365
+I+K G + A + I A+ ++ + Y +G
Sbjct: 216 DDVKNAAYHIIEKKG--ATYYGVAMSLARITKAILHNENSILTV--------STYLDGQ- 264
Query: 366 YGIAEDIVFSMPC 378
YG +D+ +P
Sbjct: 265 YGA-DDVYIGVPA 276
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 61.1 bits (149), Expect = 2e-10
Identities = 86/359 (23%), Positives = 135/359 (37%), Gaps = 79/359 (22%)
Query: 97 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKL-----LGSERSL----QALEGVAM 147
+ +AV GAAG I G Q +AL L GSE SL GVA+
Sbjct: 1 MKVAVLGAAGGI--------------G--QALALLLKTQLPSGSELSLYDIAPVTPGVAV 44
Query: 148 ELEDSLFPLLREVK--IGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFAEQG 205
+L S P ++K G + E A+ L+ R PGM+R+ L ++N I
Sbjct: 45 DL--SHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV 102
Query: 206 KALNAVASRNVKVIVVGNPCNT---NALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
+ + A + ++ NP NT A LK A +T LD R+ +A
Sbjct: 103 QQV-AKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAEL 161
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPV-KEIIKDHKWLEEGFTETIQKRGGL 321
G +V I G+ T +P L +++ G+ ++ + D T+ IQ G
Sbjct: 162 KGKQPGEVEVPVIGGHSGVTILP--LLSQVPGVSFTEQEVAD-------LTKRIQNAGTE 212
Query: 322 LIK-KWGRSSA--------ASTAVSIVDAM--KSLVTPTPEGDWFSSGVYTNGNPYGIAE 370
+++ K G SA A +S+V A+ + V + V +G
Sbjct: 213 VVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVE-------CAYVEGDG-----QY 260
Query: 371 DIVFSMPCRSKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGE---GIAF 426
FS P +G V++ L + EQ L + + L + G F
Sbjct: 261 ARFFSQPLLLGKNG----VEERKSIGTL----SAFEQNAL--EGMLDTLKKDIALGEEF 309
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 61.0 bits (149), Expect = 2e-10
Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 41/259 (15%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI----GAKPRGPGMERAG----- 192
EG A++L + V + YE A + G + PG +
Sbjct: 47 EGKALDLSHVTSVVDTNVSVRAEYSYE--AALTGADCVIVTAGL-TKVPGKPDSEWSRND 103
Query: 193 LLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRL 250
LL N +I E G+ + +IVV NP + + + + +P N L
Sbjct: 104 LLPFNSKIIREIGQNIKK-YCPKTFIIVVTNPLDCMVKVMCEAS-GVP-TNMICGMACML 160
Query: 251 DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEG 310
D R + +A V V I G H VP +NG P+++ IKD E+
Sbjct: 161 DSGRFRRYVADALSVSPRDVQATVI-GTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 219
Query: 311 FTETIQ---KRGGLLIKKWGRSSA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGV 359
E + GG +++ G+ SA A++AV++ + K ++ V
Sbjct: 220 LEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIP---------CSV 270
Query: 360 YTNGNPYGIAEDIVFSMPC 378
Y NG YG+ +D+ +P
Sbjct: 271 YCNGE-YGL-KDMFIGLPA 287
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 60.2 bits (147), Expect = 3e-10
Identities = 52/251 (20%), Positives = 90/251 (35%), Gaps = 31/251 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM+ + V I Y+ DA L++ GA + PG R L+D N
Sbjct: 44 AIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDA--DLVVICAGA-NQKPGETRLDLVDKNI 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
IF +++ A +V NP + K + + + T LD R +
Sbjct: 101 AIFRSIVESVMAS-GFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKR 318
L V V I G H T++P + A I +P++++++ + E I
Sbjct: 160 LGEYFSVAPQNVHAYII-GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVN 218
Query: 319 ----GGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYG 367
+I+K G + A + A+ ++ + Y +G YG
Sbjct: 219 VRDAAYQIIEKKG--ATYYGIAMGLARVTRAILHNENAILTV--------SAYLDGL-YG 267
Query: 368 IAEDIVFSMPC 378
D+ +P
Sbjct: 268 E-RDVYIGVPA 277
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 59.8 bits (146), Expect = 4e-10
Identities = 52/256 (20%), Positives = 89/256 (34%), Gaps = 38/256 (14%)
Query: 143 EGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGM-----ERAGL 193
G A++ + K+ G N Y+ A+ ++I G + PG R L
Sbjct: 42 HGKALDTSHTNVMAYSNCKVSGSNTYDDLAGAD--VVIVTAGF-TKAPGKSDKEWNRDDL 98
Query: 194 LDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLD 251
L +N +I E G + N +IVV NP + + +++ +P KN LD
Sbjct: 99 LPLNNKIMIEIGGHIKK-NCPNAFIIVVTNPVDVMVQLLHQHS-GVP-KNKIIGLGGVLD 155
Query: 252 ENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGF 311
+R K ++ K V V+ + G H V + G+P++E I + +
Sbjct: 156 TSRLKYYISQKLNVCPRDVNAHIV-GAHGNKMVLLKRYITVGGIPLQEFINNKLISDAEL 214
Query: 312 TETIQ--KRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTN 362
L I S A+ + + ++ K ++
Sbjct: 215 EAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLI---------CSTLLE 265
Query: 363 GNPYGIAEDIVFSMPC 378
G YG DI P
Sbjct: 266 GQ-YGH-SDIFGGTPV 279
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 59.4 bits (145), Expect = 5e-10
Identities = 54/297 (18%), Positives = 101/297 (34%), Gaps = 51/297 (17%)
Query: 99 IAVSGAAGMI----ANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF 154
++V GAAG + ++ + A EV+ D P G A + +
Sbjct: 3 VSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDT---------VGQAADTNHGI- 52
Query: 155 PLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDINGQIFAEQGKALNAV 211
++ YE ++ +++ G PR PG R L N I + +L+
Sbjct: 53 AYDSNTRVRQGGYEDTAGSD--VVVITAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEH 109
Query: 212 ASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRAKCQLALKAGVFYDK 269
+ + + NP + + A + RLD R + L+ +
Sbjct: 110 -NDDYISLTTSNPVDLLNRHLYE-AGDRS-REQVIGFGGRLDSARFRYVLSEEFDAPVQN 166
Query: 270 VSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWGRS 329
V + G H QVP F ++G + E+ + Q+ +I++ G
Sbjct: 167 VEGTIL-GEHGDAQVPVFSKVSVDGTDPEF---SGDEKEQLLGDL-QESAMDVIERKG-- 219
Query: 330 SA----ASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMPC 378
+ A +V+A+ ++ + V G +G ED F +P
Sbjct: 220 ATEWGPARGVAHMVEAILHDTGEVLP---------ASVKLEGE-FGH-EDTAFGVPV 265
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 59.4 bits (145), Expect = 5e-10
Identities = 51/250 (20%), Positives = 89/250 (35%), Gaps = 30/250 (12%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+ G M+L+ + V++ Y DA L++ GA + PG R L+ N
Sbjct: 44 VRGDVMDLKHATPYSPTTVRVKAGEYSDCHDA--DLVVICAGA-AQKPGETRLDLVSKNL 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
+IF + A + +V NP + A K + + + T LD R +
Sbjct: 101 KIFKSIVGEVMAS-KFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ-- 316
L+ V V I G H T++P + +A I G P+K +++ + +
Sbjct: 160 LSEAFDVAPRSVDAQII-GEHGDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQT 218
Query: 317 -KRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 368
+I+ G + A I +A+ + V G Y
Sbjct: 219 RDAAYDIIQAKG--ATYYGVAMGLARITEAIFRNEDAVLTV--------SALLEGE-YEE 267
Query: 369 AEDIVFSMPC 378
ED+ +P
Sbjct: 268 -EDVYIGVPA 276
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 58.3 bits (142), Expect = 1e-09
Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 35/265 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
+G A++LED+ KI Y +DA+ L++ GA P+ PG R L++ N
Sbjct: 43 TKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDAD--LVVITAGA-PQKPGESRLDLVNKNL 98
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I + K + + +V NP + K + + + T LD +R +
Sbjct: 99 NILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVA 157
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQ-- 316
L + V V + G H ++ + A I PV+++ K+ ++ +
Sbjct: 158 LGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGV 216
Query: 317 -KRGGLLIKKWGRSSA----ASTAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGI 368
+ +I G + + + I A+ ++ V P G Y +G YG+
Sbjct: 217 RNKAYDIINLKG--ATFYGIGTALMRISKAILRDENAVLPV--------GAYMDG-QYGL 265
Query: 369 AEDIVFSMPCRSKGDGDYELVKDVI 393
DI P G G +K +I
Sbjct: 266 -NDIYIGTPAIIGGTG----LKQII 285
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 58.3 bits (142), Expect = 1e-09
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 35/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLI---GAKPRGPGMERAGLLDING 198
G AM++ L P + ++ + Y +D + +++ GA R PG R L N
Sbjct: 45 AIGEAMDINHGL-PFMGQMSLYAGDYSDVKDCD--VIVVTAGA-NRKPGETRLDLAKKNV 100
Query: 199 QIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQ 258
I E + + + ++VV NP + + K + K + T LD R +
Sbjct: 101 MIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYL 159
Query: 259 LALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKW------LEEGFT 312
L+ K GV V I G H +Q+P + I G + E I D K ++
Sbjct: 160 LSEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAE 218
Query: 313 ETIQKRGGLLIKKWGRSS---AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
+ G +IK G + A S +IV+ + ++ T G NG
Sbjct: 219 DVKTA-GATIIKNKGATYYGIAVSIN-TIVETLLKNQNTIRT---------VGTVINGM- 266
Query: 366 YGIAEDIVFSMPC 378
YGI ED+ S+P
Sbjct: 267 YGI-EDVAISLPS 278
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 58.0 bits (141), Expect = 1e-09
Identities = 45/301 (14%), Positives = 84/301 (27%), Gaps = 52/301 (17%)
Query: 86 AEEETKSWKKMVNIAV--SGAAGM-IANHLLFKLAAGEVLGPDQPIALKLLGSERSLQAL 142
A E K+ K I V G G+ + K A ++ D +
Sbjct: 7 ANHENKTVNK---ITVVGGGELGIACTLAISAKGIADRLVLLDLS------------EGT 51
Query: 143 EGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDINGQIFA 202
+G M+LE P ++ ++ G ++ N +F
Sbjct: 52 KGATMDLEIFNLP----NVEISKDLSASAHSK-VVIFTVNSLGSSQSYLDVVQSNVDMFR 106
Query: 203 EQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKCQLALK 262
AL S++ ++V P + K + + LD R + +
Sbjct: 107 ALVPALGHY-SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNV 165
Query: 263 AGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLL 322
I G +V + + + R L
Sbjct: 166 LKAQTSGKEVWVI-GEQGEDKVLTWSGQ--EEVVSHTSQVQ-----------LSNRAMEL 211
Query: 323 IKKWGRSSAA--STAVSIVDAM---KSLVTPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP 377
++ G+ S + + +VD++ K V G Y I ++ S+P
Sbjct: 212 LRVKGQRSWSVGLSVADMVDSIVNNKKKVHSV--------SALAKGY-YDINSEVFLSLP 262
Query: 378 C 378
C
Sbjct: 263 C 263
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 56.4 bits (137), Expect = 5e-09
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 33/253 (13%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
+E ++++ V I G + E+ DA+ +++ G + PG R L+
Sbjct: 45 VEAEVLDMQHGS-SFYPTVSIDGSDDPEICRDAD--MVVITAGP-RQKPGQSRLELVGAT 100
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRLDENRAKC 257
I L V + N +++ NP + + K + F + T LD R +
Sbjct: 101 VNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRF 159
Query: 258 QLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKD--HKWLEEGFTETI 315
+A + GV V G H ++VP + +A I G+P+ + H L+ E I
Sbjct: 160 LIAQQTGVNVKNVHAYIA-GEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEI 218
Query: 316 QKR----GGLLIKKWGRSS--AASTAVSIVDAM----KSLVTPTPEGDWFSSGVYTNGNP 365
+ +I G ++ + V I++A+ ++
Sbjct: 219 HQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILP---------VSSMLKDF- 268
Query: 366 YGIAEDIVFSMPC 378
+GI DI S+P
Sbjct: 269 HGI-SDICMSVPT 280
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 51.7 bits (125), Expect = 2e-07
Identities = 39/208 (18%), Positives = 73/208 (35%), Gaps = 12/208 (5%)
Query: 142 LEGVAMELEDSLFPLLREVKIGINPYELFEDAEW----ALLIGAKPRGPGMERAGLLDIN 197
++ ++ +D++ L I IN + DA+ I + P +R L
Sbjct: 39 VKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFT 98
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNA--PSIPAKNFHALTRLDENRA 255
+ G L + ++V+ NP + + P K T LD R
Sbjct: 99 SSMVQSVGTNLKES-GFHGVLVVISNPVDVITALFQHVTGFP--AHKVIGTGTLLDTARM 155
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
+ + + VS + G H +Q + R+ G P+ + E
Sbjct: 156 QRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEA 214
Query: 316 QKRGGLLIKKWGRSSA--ASTAVSIVDA 341
+K G ++ G +S A++A+ I A
Sbjct: 215 RKGGFTVLNGKGYTSYGVATSAIRIAKA 242
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 50.2 bits (121), Expect = 5e-07
Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 42/249 (16%)
Query: 142 LEGVAMELEDSLFPLLREVKI-GINPYELFEDAEWALLI---GAKPRGPGMERAGLLDIN 197
G AM+L + + + KI G Y L + +E +++ G R PGM R L N
Sbjct: 38 AVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSE--IIVVTAGL-ARKPGMTRLDLAHKN 94
Query: 198 GQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKN--FHALTRLDENRA 255
I + K + + K++VV NP + I K P +N F +LD R
Sbjct: 95 AGIIKDIAKKIVEN-APESKILVVTNPMDVMTYIMWK-ESGKP-RNEVFGMGNQLDSQRL 151
Query: 256 KCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETI 315
K +L + I G H + A +G E + +
Sbjct: 152 KERLYNAGAR---NIRRAWIIGEHGDSMFVAKSLADFDGEVDWEAV---------ENDVR 199
Query: 316 QKRGGLLIKKWGR------SSAASTAVSIVDAMKSLVTPTPEGDWFSSGVYTNGNPYGIA 369
+IK+ G + ++V+ ++ + + G YGI
Sbjct: 200 FV-AAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIP---------TSMILQGE-YGI- 247
Query: 370 EDIVFSMPC 378
E++ +P
Sbjct: 248 ENVAVGVPA 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 73/495 (14%), Positives = 136/495 (27%), Gaps = 130/495 (26%)
Query: 32 SLRRRAFRPIIGPRNPTISCSVNQVQAPVAVEQDDPKSKTNDC------------YGVF- 78
S+ R + I R+ + NQV A V + P K GV
Sbjct: 106 SMMTRMY---IEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 79 ----CLTYDLKAEEETKS-------WKKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQP 127
+ D+ + + W + N + LL+++ D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 128 IALKLLGSE-----RSLQALEGVAMELEDSLFPLLREVKIGINP--YELFE--------- 171
+KL R L + E+ L +L V+ N + F
Sbjct: 221 SNIKLRIHSIQAELRRLLKSK----PYENCLL-VLLNVQ---NAKAWNAFNLSCKILLTT 272
Query: 172 -DAEWA-LLIGAKPRGPGME--RAGLLDING-QIFAEQGKALNAVASRNVKVIVVGNPCN 226
+ L A ++ L + K L+ + ++ NP
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRR 329
Query: 227 TNALI--CLKNAPSIPAKNFHALT--RLDENRAKCQLALKA----------GVFYD--KV 270
++I +++ + N+ + +L L+ VF +
Sbjct: 330 L-SIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 271 SNMTI---WGNHSTTQVPDFLNARINGLPVKEIIKDHKWLEEGFTETIQKRGGLLIKKWG 327
+ + W + + V + N L +++ K +E TI L K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVV----NKLHKYSLVE--KQPKES---TISIPSIYLELKVK 438
Query: 328 RSSAASTAVSIVDAMK--------SLVTPTPEGDWFSSGVY--TNGNPYGIAE------- 370
+ + SIVD L+ P + ++S + N
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 371 DIVF--------SMPCRSKGD-----GDYELVKDVIFD-DYLRKRIAKTEQELL--AEKK 414
D F S + G + K I D D +R+ + L E+
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 415 CVAHLTGEGIAFCDL 429
+ + DL
Sbjct: 559 LICS------KYTDL 567
Score = 40.2 bits (93), Expect = 0.001
Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 50/202 (24%)
Query: 1 MAVVAQLSPSS------YTETTRLSSSQLSLSST--HLSSLRRRAFRPIIGPRNPTISCS 52
M VV +L S T + S L L + +L R
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--------------- 449
Query: 53 VNQVQAPVAVEQDDPKSKTNDCYGVFCLTYDLKAEEETKSW--------------KKMVN 98
V+ P + DD D Y + + LK E + +K+ +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 99 IAVS-GAAGMIANHLL-FKLAAGEVLGPDQPIALKLLGSERSLQALEGVAMELEDSLF-- 154
+ + A+G I N L K + + P ER + A+ ++E++L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYIC-DNDPK------YERLVNAILDFLPKIEENLICS 562
Query: 155 PLLREVKIGI-NPYE-LFEDAE 174
++I + E +FE+A
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.044
Identities = 48/272 (17%), Positives = 86/272 (31%), Gaps = 85/272 (31%)
Query: 208 LNAVASRNVKVIVVGNPCNTNALICLKNAPSIPAKNFHALTRL----------------- 250
++A ++R + + G+ L++ +P +F ++L
Sbjct: 1 MDAYSTRPL-TLSHGS---------LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 251 -DENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARING-----LPVKEIIKDH 304
DE +L K F VS++ Q LN + L +I H
Sbjct: 51 DDEPTTPAELVGK---FLGYVSSLVEPSKVG--QFDQVLNLCLTEFENCYLEGNDI---H 102
Query: 305 ---KWLEEGFTETIQKRGGLLIKKWGRSSAASTAVSIVDAMKS-LVTPTPEGDWFSSGVY 360
L + T+ K LIK + + + S L EG+ + +
Sbjct: 103 ALAAKLLQENDTTLVKT-KELIKNYITARIMAKR-PFDKKSNSALFRAVGEGN---AQLV 157
Query: 361 TNGNPYGIAEDIVFSMPCRSKGDG---DY--ELVKDVIFDDY------LRKRIAKTEQEL 409
+F G G DY EL ++ Y L K A+T EL
Sbjct: 158 A-----------IFG------GQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSEL 198
Query: 410 LAEKKCVAHLTGEGI---AFCDLPEDTMLPGE 438
+ + +G+ + + P +T P +
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNT--PDK 228
Score = 34.3 bits (78), Expect = 0.088
Identities = 31/240 (12%), Positives = 57/240 (23%), Gaps = 105/240 (43%)
Query: 62 VEQDDPKSKT-----------NDCYGVFCLTYDLKAEEETKSWKKMVNIAVSGAAGMIAN 110
+ ++P + T + Y + + +T+ K +N +
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS------- 1716
Query: 111 HLLFKLAAGEVLGPD---------QPIALKL-------------------------LGSE 136
F+ QP AL L LG E
Sbjct: 1717 -YTFR-------SEKGLLSATQFTQP-ALTLMEKAAFEDLKSKGLIPADATFAGHSLG-E 1766
Query: 137 RSLQALEGVA--MELEDSLFPLLREVKI-GINPYELFEDAEWAL----LIGAKPR--GPG 187
+ AL +A M +E L+ V G+ E +I P
Sbjct: 1767 YA--ALASLADVMSIES----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 188 MERAGLLDINGQIFAEQG----------------------------KALNAVASRNVKVI 219
+ L + ++ G LN + + + +I
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 29.7 bits (67), Expect = 1.7
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 95 KMVNIAVSGAAGMIANHLLFKLAA 118
K+ I + GA+G + + LL +
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALN 26
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi
isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Length = 272
Score = 29.4 bits (67), Expect = 2.0
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 211 VASRNVKVIVVGNPCNT---NALICLKNAPSIP 240
+ + ++K++V+ CNT AL ++ + IP
Sbjct: 62 LENHHIKMLVIA--CNTATAIALDDIQRSVGIP 92
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
PDB: 1pz0_A*
Length = 312
Score = 29.4 bits (67), Expect = 2.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 148 ELEDSLFPLLREVKIGINPY 167
E E + FP +E I PY
Sbjct: 184 EAEKTFFPYTKEHNISFIPY 203
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 28.6 bits (64), Expect = 3.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 85 KAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAA 118
E M N+ + GA G IA H++ +LA
Sbjct: 12 SGRENLYFQGHMKNVLILGAGGQIARHVINQLAD 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.9
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 19/35 (54%)
Query: 233 LK-NAP-SIPAKNFHALTRLDENRAKCQLALKAGV 265
LK A S PA LA+KA +
Sbjct: 29 LKLYADDSAPA-----------------LAIKATM 46
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 27.2 bits (60), Expect = 8.2
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 98 NIAVSGAAGMIANHLLFKL-AAGEVLGPDQPIAL-----KLLGSERSLQALEGVAMELED 151
I + GA G + +L + G + A+ K+ + + + L+ ++ D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRG-----HEVTAIVRNAGKITQTHKDINILQK---DIFD 53
Query: 152 SLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAG 192
L + + ++ Y + D + +
Sbjct: 54 LTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTV 94
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 27.5 bits (62), Expect = 8.9
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 148 ELEDSLFPLLREVKIGINPY 167
+E + P + + Y
Sbjct: 205 TIEKDILPYAEKHNAVVLAY 224
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 27.5 bits (61), Expect = 9.2
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 139 LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDING 198
+ A+E + + L D+L+ +L IN D ++ +I AG++ G
Sbjct: 248 MGAIERLDVMLNDALYGILFR---DINMQRTMIDQNFSRII--------NGFAGVIINTG 296
Query: 199 Q 199
+
Sbjct: 297 E 297
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 27.7 bits (62), Expect = 9.3
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 80 LTYDLKAEEETKSWKKMV--NIAVSGAAGMIANHLLFKLAAG--EVL----GPDQPIALK 131
L DLK T + +A++G+ G++ L +L G EV+ +P
Sbjct: 129 LIEDLKFLSRTSTLFDGSPLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF 188
Query: 132 LLGSERSLQALEGV 145
+ L+G
Sbjct: 189 WDPLNPASDLLDGA 202
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 27.4 bits (61), Expect = 9.5
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 85 KAEEETKSWKKMVNIAVSGAAGMIANHLLFKLAA 118
+ E ++ M +IA+ GAAGM+ L +L
Sbjct: 4 SSGRENLYFQGM-HIAIIGAAGMVGRKLTQRLVK 36
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 27.3 bits (60), Expect = 9.5
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 96 MVNIAVSGAAGMIANHLLFKLAA 118
I + GAAG IA L L
Sbjct: 5 YXYITILGAAGQIAQXLTATLLT 27
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 27.6 bits (61), Expect = 9.5
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 139 LQALEGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAGLLDING 198
+ A EGV +D + +L IN F DA + I M A + I+G
Sbjct: 172 MFAEEGVNGAHQDPQYNVLYR---NINMIRSFIDACESKTI--------MAWADMAQIDG 220
Query: 199 Q 199
Sbjct: 221 A 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.393
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,773,961
Number of extensions: 420580
Number of successful extensions: 1230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1190
Number of HSP's successfully gapped: 73
Length of query: 439
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 343
Effective length of database: 4,021,377
Effective search space: 1379332311
Effective search space used: 1379332311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)