Query 013621
Match_columns 439
No_of_seqs 57 out of 59
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:00:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ck6_A Putative membrane trans 100.0 9.4E-30 3.2E-34 232.0 16.5 219 179-437 30-252 (252)
2 3nvo_A Zinc transport protein 100.0 1.5E-28 5E-33 225.0 15.2 221 178-431 39-263 (264)
3 2iub_A CORA, divalent cation t 99.9 4.5E-22 1.5E-26 193.0 17.8 227 178-437 68-303 (363)
4 2hn1_A CORA, magnesium and cob 99.8 4.4E-20 1.5E-24 169.9 13.2 199 177-409 63-266 (266)
5 2bbh_A Divalent cation transpo 99.8 3.3E-20 1.1E-24 170.2 12.2 204 178-412 59-269 (269)
6 4ev6_A Magnesium transport pro 99.8 2.6E-19 9.1E-24 171.9 18.3 227 178-437 47-279 (339)
7 4egw_A Magnesium transport pro 99.8 1.2E-19 4E-24 169.2 14.2 224 179-437 48-279 (280)
8 3r2p_A Apolipoprotein A-I; amp 55.9 14 0.00046 33.0 4.9 36 299-338 1-36 (185)
9 3s84_A Apolipoprotein A-IV; fo 49.3 1.6E+02 0.0056 28.0 11.5 29 313-342 5-33 (273)
10 1nfn_A Apolipoprotein E3; lipi 45.4 1.7E+02 0.0057 26.4 10.4 41 394-434 105-153 (191)
11 1yhn_B RILP, RAB interacting l 37.0 40 0.0014 26.8 4.2 32 404-435 5-36 (65)
12 2zvf_A Alanyl-tRNA synthetase; 35.5 78 0.0027 27.0 6.3 57 372-433 7-63 (171)
13 3ic3_A Putative pyruvate dehyd 27.8 56 0.0019 27.9 3.9 44 254-320 20-63 (101)
14 3ci9_A Heat shock factor-bindi 21.9 1.2E+02 0.0041 22.6 4.3 39 303-342 1-42 (48)
15 1gs9_A Apolipoprotein E, APOE4 21.8 1.7E+02 0.0058 26.0 6.1 47 387-434 99-153 (165)
16 2qup_A BH1478 protein; structu 21.2 74 0.0025 27.8 3.6 34 326-362 105-138 (145)
17 3ghg_A Fibrinogen alpha chain; 21.1 1.6E+02 0.0055 31.5 6.7 10 298-307 13-22 (562)
18 4ev6_A Magnesium transport pro 20.5 62 0.0021 30.8 3.2 17 230-246 114-130 (339)
No 1
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=99.97 E-value=9.4e-30 Score=231.98 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=199.8
Q ss_pred CCceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecC-ceEEEecccCCCCCCCCCCCc
Q 013621 179 AGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAG-GLLFELLGQSAGDPFVDEDDI 257 (439)
Q Consensus 179 ~gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvag-GLL~~LRGvN~gnP~~~pEDM 257 (439)
.| +| +|+...+++...||.+. .|||.+.+.+.+.+.| | |..+.++ ++++.|++++. +++..+.++
T Consensus 30 ~~-~W-i~l~~p~~~e~~~l~~~-~l~~l~~ed~l~~~~r--p--------k~e~~~d~~lfivl~~~~~-~~~~~~~~~ 95 (252)
T 3ck6_A 30 PN-HW-YHCERLHPDIRGWLEDN-HVPRATVDHLLADESR--P--------SFHPLDDDNFMLILRGINM-NENASPEDM 95 (252)
T ss_dssp TT-EE-EEEETTCTTHHHHHHHT-TCCHHHHHHHHCSSCC--C--------EEEECSTTCEEEEEEECCC-STTCCTTSC
T ss_pred CC-EE-EEecCCCHHHHHHHHHc-CCCHHHHHHHhCCCCC--C--------ceEEeCCceEEEEEecCcc-CCCCCcccE
Confidence 35 88 99999999999999999 9999999999999999 9 9999999 99999999999 787778889
Q ss_pred ceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 013621 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337 (439)
Q Consensus 258 ~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelE 337 (439)
+.+++|+.+++|||++ ..+..+++.|++.+.+| .||+++.+|+.+|++.++++.-++ .+.|.+++|+||
T Consensus 96 -~~l~i~l~~~~lITvr-------~~~~~~~~~v~~~l~~~--~~~~~~~~ll~~lld~ivd~y~~~-l~~l~~~id~lE 164 (252)
T 3ck6_A 96 -LSIRILYFQGALISTR-------KIPSRAIMEIRQALAEH--KGPKSLASLLNQIIEGLNGKIDLY-LDTIEETLNEFD 164 (252)
T ss_dssp -EEEEEEEETTEEEEEE-------SSCCHHHHHHHHHHHTT--CSCSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTCC
T ss_pred -EEEEEEEeCCEEEEEe-------CCCcchHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999 88899999999999998 789999999999999999999999 999999999999
Q ss_pred HHHhhhccCcchhhHHHhhhHHHHHHhhceeeEeeccchhHHHHHHHHh---hcccchHHHHHHHHHHHHHHHHHHHHHH
Q 013621 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ---HLRGNVARTLLEGIRKNAREMIEEQEAV 414 (439)
Q Consensus 338 lk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~---~L~~~~~r~~L~Ei~~rlrrmlEElDAv 414 (439)
++ . + ...+|..|||+++++||++.|+|+++.+|.. .+..++ +..++++.+++.+++|++|++
T Consensus 165 ~~--~-----~-------~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~~~~~~-~~~~rdv~d~~~~~~e~i~~~ 229 (252)
T 3ck6_A 165 VN--D-----E-------STYNHIAAQKALISIKRFIRPQQYAIRDLIESESELVTSR-PHQYRFAHNNITRINETIEFY 229 (252)
T ss_dssp TT--C-----G-------GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cC--c-----h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 76 1 2 3466999999999999999999999999987 455555 899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Q 013621 415 RGRLFTIQDVMQSTVRAWLQVCT 437 (439)
Q Consensus 415 R~Rl~~IQDemqS~v~e~Lnrrs 437 (439)
|+++..++|+.+|.++.++|+.|
T Consensus 230 re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 230 LGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999875
No 2
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=99.96 E-value=1.5e-28 Score=225.04 Aligned_cols=221 Identities=17% Similarity=0.266 Sum_probs=194.9
Q ss_pred CCCceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCCc
Q 013621 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI 257 (439)
Q Consensus 178 ~~gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pEDM 257 (439)
+++.+| +|++..++....||.+.-.|||.+.+.+.+.+.| | |....++++++.|++++. +++..+.++
T Consensus 39 ~~~~~W-i~l~~p~~~e~~~l~~~~~l~~l~~ed~~~~~~r--p--------k~e~~~~~~fivl~~~~~-~~~~~~~~~ 106 (264)
T 3nvo_A 39 SQHPCW-LHLNYTHPDSARWLASTPLLPNNVRDALAGESSR--P--------RVSRMGEGTLITLRCING-STDERPDQL 106 (264)
T ss_dssp TTSCEE-EEEETTSHHHHHHHHHCTTSCTTTHHHHTTCCCS--C--------EEEEETTEEEEEEECC-----------C
T ss_pred CCCCEE-EEeCCCCHHHHHHHHhccCCCHHHHHHHhCCCCC--C--------ceEEECCEEEEEEEeccc-CCCCCCcce
Confidence 667788 9999999999999999888999999999999999 9 999999999999999999 877777788
Q ss_pred ceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHH
Q 013621 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIE 337 (439)
Q Consensus 258 ~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelE 337 (439)
+.+.+|+.+++|||++ ..+..+++.|++.+.+| .||.++..|+..|.+.+++..-++ .+.|.+++++||
T Consensus 107 -~~v~~~l~~~~lITv~-------~~~~~~~~~v~~rl~~~--~~~~~~~~ll~~lld~ivd~y~~~-l~~l~~~id~lE 175 (264)
T 3nvo_A 107 -VAMRLYMDERFIVSTR-------QRKVLALDDVVSDLQEG--TGPVDCGGWLVDVCDALTDHASEF-IEELHDKIIDLE 175 (264)
T ss_dssp -CEEEEEECSSEEEEEE-------SSCCHHHHHHHHHHHTT--CSCSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred -EEEEEEEeCCEEEEEe-------cCCcCcHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999 88899999999999999 789999999999999999999999 999999999999
Q ss_pred HHHhhhccCcchhhHHHhhhHHHHHHhhceeeEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHHHHH
Q 013621 338 LKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEEQEA 413 (439)
Q Consensus 338 lk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~~~r~~L~Ei~~rlrrmlEElDA 413 (439)
++++.. ... ...+|-.|||+++.+||++.|+++++.+|.. |+..++ +..|+++.+.+.+++|.+++
T Consensus 176 ~~l~~~--~~~-------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~-~~~l~Dv~d~~~~~~e~~~~ 245 (264)
T 3nvo_A 176 DNLLDQ--QIP-------PRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDH-RRRMQDIADRLGRGLDEIDA 245 (264)
T ss_dssp TC------CCC-------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC--Cch-------hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999875 334 4567999999999999999999999999998 777777 99999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 013621 414 VRGRLFTIQDVMQSTVRA 431 (439)
Q Consensus 414 vR~Rl~~IQDemqS~v~e 431 (439)
.|+++..++|+++|.++|
T Consensus 246 ~re~l~~l~d~~~s~~~e 263 (264)
T 3nvo_A 246 CIARTGIMADEIAQVMQE 263 (264)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999998876
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=99.88 E-value=4.5e-22 Score=192.98 Aligned_cols=227 Identities=14% Similarity=0.108 Sum_probs=196.7
Q ss_pred CCCceeEEEecCCC-ccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCC-CC
Q 013621 178 PAGPVWWCHMLAGH-PSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVD-ED 255 (439)
Q Consensus 178 ~~gP~Ww~Hlda~h-p~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~-pE 255 (439)
+++.+| +|+...+ ++...||.+.-.|||.+.+.+.+.+.| | |....++++++.|++++. +++.. .+
T Consensus 68 ~~~~~W-i~l~~p~~~~e~~~l~~~f~l~~l~ied~l~~~~r--p--------k~e~~~~~lfivl~~~~~-~~~~~~~~ 135 (363)
T 2iub_A 68 SSTPTW-INITGIHRTDVVQRVGEFFGIHPLVLEDILNVHQR--P--------KVEFFENYVFIVLKMFTY-DKNLHELE 135 (363)
T ss_dssp CSSCEE-EEEECTTCHHHHHHHHHHTTCCHHHHHHHHCCSSC--C--------EEEEETTEEEEEEEEEEE-ETTTTEEE
T ss_pred CCCeEE-EEeCCCCCHHHHHHHHHHcCcChhHHHHHhCCCCC--C--------eEEEECCEEEEEEEeeee-cccccccc
Confidence 456566 9999984 999999999878999999999999888 9 999999999999999988 54322 22
Q ss_pred CcceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCC---CCHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 013621 256 DIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVP---RTVHEVIAHLACRLSRWDDRLFRKTIFGA 332 (439)
Q Consensus 256 DM~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP---~s~~e~Ia~La~rLt~~~d~l~~k~L~d~ 332 (439)
-.||+ .|+.+++|||.+ ..+..+++.|++.+.++ .|+ .++..++..|.+.+++..-++ .+.+.++
T Consensus 136 ~~~v~--~~l~~~~liTv~-------~~~~~~~~~v~~rl~~~--~~~~~~~~~~~ll~~lld~ivd~y~~~-l~~l~~~ 203 (363)
T 2iub_A 136 SEQVS--LILTKNCVLMFQ-------EKIGDVFDPVRERIRYN--RGIIRKKRADYLLYSLIDALVDDYFVL-LEKIDDE 203 (363)
T ss_dssp EEEEE--EEEETTEEEEEE-------SSSCCSCHHHHHHHHTT--CTTTTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred eEEEE--EEEECCEEEEEE-------eCCCchHHHHHHHHHhc--CCccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 23355 599999999999 77788899999999987 333 367778889999999999999 9999999
Q ss_pred hhHHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeeEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHH
Q 013621 333 ADEIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMI 408 (439)
Q Consensus 333 aDelElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~~~r~~L~Ei~~rlrrml 408 (439)
+|+||++++.. ...+ ..++|..||++++++||++.|+++++.+|.. ++..+. +..++++.+.+.+++
T Consensus 204 id~lE~~v~~~-~~~~-------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~-~~~lrDv~d~~~~~~ 274 (363)
T 2iub_A 204 IDVLEEEVLER-PEKE-------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKET-VPYFRDVYDHTIQIA 274 (363)
T ss_dssp HHHHHHHTTSS-CCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHH-HHHHHHHHHHHHHHH
Confidence 99999999985 3333 4567999999999999999999999999987 566555 899999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 013621 409 EEQEAVRGRLFTIQDVMQSTVRAWLQVCT 437 (439)
Q Consensus 409 EElDAvR~Rl~~IQDemqS~v~e~Lnrrs 437 (439)
|.++..|+++..++|...|.++.++|+.|
T Consensus 275 e~~~~~re~l~~l~d~~~s~is~~~N~im 303 (363)
T 2iub_A 275 DTVETFRDIVSGLLDVYLSSVSNKTNEVM 303 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876
No 4
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=99.82 E-value=4.4e-20 Score=169.90 Aligned_cols=199 Identities=11% Similarity=0.068 Sum_probs=170.4
Q ss_pred CCCCceeEEEecCC-CccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCC
Q 013621 177 RPAGPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDED 255 (439)
Q Consensus 177 ~~~gP~Ww~Hlda~-hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pE 255 (439)
.+++.+| +|+... ++....||.+.-.|||.+.+.+.+.+.| | |....++++++.+++++. ++....
T Consensus 63 ~~~~~~W-i~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~~~r--p--------k~e~~~d~lfivl~~~~~-~~~~~~- 129 (266)
T 2hn1_A 63 ALNKKLW-IDVVGVHDESLIAKICEFLGIHPLAAEDILNTAQR--V--------KIEDYDDHLFLVLKILLY-NETLEI- 129 (266)
T ss_dssp CTTSEEE-EEECCCCCHHHHHHHHHTTTCCHHHHHHHHBTTCC--S--------EEEECSSEEEEEEEEEEE-SSSEEE-
T ss_pred CCCCeEE-EEeCCCCCHHHHHHHHHHcCCCHhHHHHHhCCCCC--C--------eEEEECCEEEEEEEeccc-cCccce-
Confidence 3556566 999997 7999999999888999999999999999 9 999999999999999998 542222
Q ss_pred CcceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhH
Q 013621 256 DIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADE 335 (439)
Q Consensus 256 DM~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDe 335 (439)
.||+ +|+.+|+|||++ ..+..+++.|++.+.++|..-..++..++..|.+.+++..-++ .+.|.+++|+
T Consensus 130 -~~v~--~~l~~~~lITv~-------~~~~~~~~~v~~rl~~~~~~~~~~~~~ll~~lld~ivd~y~~~-l~~i~~~id~ 198 (266)
T 2hn1_A 130 -DQLS--LVLKKNLVATFE-------EREYWILDSIRSRLKSGGRMRKLAGDYLAYTILDAVVDSYFEA-LLKISDEIEV 198 (266)
T ss_dssp -EEEE--EEEETTEEEEEE-------SSSSCSTHHHHHHHHSSSHHHHSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred -EEEE--EEEECCEEEEEE-------cCCCChHHHHHHHHHhCCchhhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 2355 599999999999 7788899999999988722112567777789999999999999 9999999999
Q ss_pred HHHHHhhhccCcchhhHHHhhhHHHHHHhhceeeEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHH
Q 013621 336 IELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIE 409 (439)
Q Consensus 336 lElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~~~r~~L~Ei~~rlrrmlE 409 (439)
||++++.... + ...+|..||++++.+||++.|+++++.+|.. ++..++ +..|+++.+.+.|++|
T Consensus 199 lE~~l~~~~~--~-------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~-~~~lrDv~dh~~r~~e 266 (266)
T 2hn1_A 199 LEDEVVSGDS--T-------LIGKIHSLKREILAFRNAVWPLRDVLSFFTRVEHELIGEEV-KVYYRDVYDHAVRLME 266 (266)
T ss_dssp HHHHHHTTTC--C-------CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCTTSCTTT-HHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcH--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHHHHHhC
Confidence 9999988633 5 4567999999999999999999999999997 777777 9999999999999875
No 5
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=99.82 E-value=3.3e-20 Score=170.20 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=149.1
Q ss_pred CCCceeEEEecCC-CccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCC-CC
Q 013621 178 PAGPVWWCHMLAG-HPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVD-ED 255 (439)
Q Consensus 178 ~~gP~Ww~Hlda~-hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~-pE 255 (439)
+++.+| +|+... ++....||.+.-.|||.+.+.+.+...| | |....++++++.+++++. +++.. .+
T Consensus 59 ~~~~~W-i~l~~p~~~~e~~~l~~~f~l~~l~~ed~l~~~~r--p--------k~e~~~d~lfivl~~~~~-~~~~~~~~ 126 (269)
T 2bbh_A 59 SSTPTW-INITGIHRTDVVQRVGEFFGTHPLVLEDILNVHQR--P--------KVEFFENYVFIVLKMFTY-DKNLHELE 126 (269)
T ss_dssp CSSCEE-EEEECTTCHHHHHHHHHHHTCCHHHHHHHHCTTCC--C--------EEEECSSEEEEEEEEEEC-CC--CCCE
T ss_pred CCCeEE-EEecCCCCHHHHHHHHHHcCCCHhHHHHHhCcCCC--c--------eEEEECCEEEEEEEeeee-cCCcCcee
Confidence 456666 999997 7999999999877999999999999999 9 999999999999999998 55432 23
Q ss_pred CcceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 013621 256 DIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVG-GYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAAD 334 (439)
Q Consensus 256 DM~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aG-g~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aD 334 (439)
-.||+| |+.+|+|||.+ ..+..+++.|++.+.++ |..-+.++..++..|.+.+++..-++ ++.|.+++|
T Consensus 127 ~~~v~~--~l~~~~lITv~-------~~~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~~-l~~i~~~id 196 (269)
T 2bbh_A 127 SEQVSL--ILTKNCVLMFQ-------EKIGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFVL-LEKIDDEID 196 (269)
T ss_dssp EEEEEE--EEETTEEEEEE-------SSSCCSCHHHHHHHHTTCTTGGGSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred EEEEEE--EEECCEEEEEE-------CCCCCcHHHHHHHHHhcCCchhhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 334664 99999999999 77888999999999988 22223455557789999999999999 999999999
Q ss_pred HHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeeEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHH
Q 013621 335 EIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEE 410 (439)
Q Consensus 335 elElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~~~r~~L~Ei~~rlrrmlEE 410 (439)
+||+.++.. ...+ ...+|..||++++.+||++.|+++++.+|+. ++..++ +..|+++.+.+.|++|.
T Consensus 197 ~lE~~v~~~-~~~~-------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~-~~~lrDv~dh~~r~~e~ 267 (269)
T 2bbh_A 197 VLEEEVLER-PEKE-------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKET-VPYFRDVYDHTIQIADT 267 (269)
T ss_dssp HHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------
T ss_pred HHHHHHhcC-CCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCHHH-HHHHHHHHHHHHHHHHh
Confidence 999999985 2334 4567999999999999999999999999986 777777 99999999999999987
Q ss_pred HH
Q 013621 411 QE 412 (439)
Q Consensus 411 lD 412 (439)
+|
T Consensus 268 ~e 269 (269)
T 2bbh_A 268 VE 269 (269)
T ss_dssp --
T ss_pred cC
Confidence 64
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=2.6e-19 Score=171.88 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=198.5
Q ss_pred CCCceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCCc
Q 013621 178 PAGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDI 257 (439)
Q Consensus 178 ~~gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pEDM 257 (439)
+....| +++....++-..||.+.-.|||...+...+++.| | |....++++++.++++.. +.... .
T Consensus 47 d~~~vW-Idl~~Pt~~E~~~l~~~~~l~~~~~ed~l~~~~r--p--------k~e~~~~~~~iv~~~~~~-~~~~~---~ 111 (339)
T 4ev6_A 47 DYRLIW-IDCYDPKDEELYKLSKKIGISVSDLQIGLDEQEI--P--------RVEEDEDFYLIIYKAPLF-EEDIT---T 111 (339)
T ss_dssp SCSCEE-EEEESCCHHHHHHHHHHHTCCHHHHHHHHCTTCC--C--------EEEEETTEEEEECCCCCC-TTTCC---C
T ss_pred CCCEEE-EEeCCCCHHHHHHHHHHHCcCHhHHHHhhCCccC--C--------eEEEECCEEEEEEecCcc-CCCcc---e
Confidence 345678 9999988888999999877999988888888888 9 888899999999999887 43332 2
Q ss_pred ceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCC--CCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhH
Q 013621 258 PIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGY--NVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADE 335 (439)
Q Consensus 258 ~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~--~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDe 335 (439)
..+.+|+.+++|||.+ ..+..+++++.+.+..+.. ..+++++.++..|.+.+++...++ .+.+.+++++
T Consensus 112 -~~v~i~l~~~~lITv~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~lld~ivd~~~~~-l~~l~~~i~~ 182 (339)
T 4ev6_A 112 -TSLGIYIKNNLLLTIH-------SDKIKAIGRLHKLISTKKPRIVFERGIGFLLYHILNEITRSYSRI-LMNLEDELEE 182 (339)
T ss_dssp -CCCEEEEETTEEEEEE-------SSCCHHHHHHHHHSSSSSSCCCCCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred -EEEEEEEECCeeEEee-------cCCcchhHHHHHHHHcCCCccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5567899999999999 8889999999999887622 236788999999999999999999 9999999999
Q ss_pred HHHHHhhhccCcchhhHHHhhhHHHHHHhhceeeEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHHH
Q 013621 336 IELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEEQ 411 (439)
Q Consensus 336 lElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~~~r~~L~Ei~~rlrrmlEEl 411 (439)
||++++.. ...+ ...+|..||++++.+||++.|+++++..|.. ++..++ +..|+++.+.+.+++|.+
T Consensus 183 lE~~l~~~-~~~~-------~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~~~~~~-~~~l~dv~~~~~~l~e~~ 253 (339)
T 4ev6_A 183 LEDKLLAG-YDRE-------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKED-RENFEDLYYDTLQLIDMS 253 (339)
T ss_dssp HHHTSTTC-CCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTBCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhh-hhhh-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccccchHH-HHHHHHHHHHHHHHHHHH
Confidence 99999985 4444 4577999999999999999999999999998 556666 999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcc
Q 013621 412 EAVRGRLFTIQDVMQSTVRAWLQVCT 437 (439)
Q Consensus 412 DAvR~Rl~~IQDemqS~v~e~Lnrrs 437 (439)
+..|+++..++|...|.++.++|+.|
T Consensus 254 ~~~~e~l~~l~d~~~s~is~~~N~~m 279 (339)
T 4ev6_A 254 ATYREVLTSMMDITLSLENIKMNQIM 279 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 7
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.2e-19 Score=169.20 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=189.0
Q ss_pred CCceeEEEecCCCccHHHHhhcCCCccHHHHHhhhcccchhhhhhhhhhhccceeecCceEEEecccCCCCCCCCCCCcc
Q 013621 179 AGPVWWCHMLAGHPSVEAWLSGAQWLHPAVSLALRDESRLISERMKYLLYEVPVRVAGGLLFELLGQSAGDPFVDEDDIP 258 (439)
Q Consensus 179 ~gP~Ww~Hlda~hp~v~~WL~~~~~L~pav~~AL~dEstRisP~mk~l~yeR~vRvagGLL~~LRGvN~gnP~~~pEDM~ 258 (439)
....| +++..-.+.-..||.+.=.|||.+.....+...| | |....++.+++.++.+.. ++.. -+
T Consensus 48 ~~~vW-Idl~~Pt~eEl~~l~~~f~lh~l~leD~l~~~~r--p--------Kie~~~d~~fivl~~~~~-~~~~----~t 111 (280)
T 4egw_A 48 YRLIW-IDCYDPKDEELYKLSKKIGISVSDLQIGLDEQEI--P--------RVEEDEDFYLIIYKAPLF-EEDI----TT 111 (280)
T ss_dssp SSCEE-EEEESCCHHHHHHHHHHHTCCHHHHHHHTCTTCC--C--------EEECCSSSEEEEEEEEEC-SSSC----EE
T ss_pred CeEEE-EEeCCCCHHHHHHHHHHHCcCHHHHHHHhCcccC--c--------eEEEECCEEEEEEEeccc-cccc----ee
Confidence 45677 9999999988999999877998888777777778 9 888888999999999887 4332 23
Q ss_pred eeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCC----CCHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 013621 259 IVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVP----RTVHEVIAHLACRLSRWDDRLFRKTIFGAAD 334 (439)
Q Consensus 259 VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP----~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aD 334 (439)
.-+.+|+.+++|||.+ ..+..+++.|++.+..+ .++ ++++.++..|.+.+++..-++ .+.|.++++
T Consensus 112 ~~v~i~l~~~~lITv~-------~~~~~~~~~v~~~l~~~--~~~~~~~~g~~~ll~~lld~ivd~y~~~-l~~i~~~id 181 (280)
T 4egw_A 112 TSLGIYIKNNLLLTIH-------SDKIKAIGRLHKLISTK--KPRIVFERGIGFLLYHILNEITRSYSRI-LMNLEDELE 181 (280)
T ss_dssp EEEEEEEETTEEEEEE-------SSCCHHHHHHHHHHHHS--CCSSSCTTTTTHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred eeEEEEEECCEEEEEe-------cCCcchHHHHHHHHHhc--CcccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5677899999999999 88889999999999887 442 457788889999999999999 999999999
Q ss_pred HHHHHHhhhccCcchhhHHHhhhHHHHHHhhceeeEeeccchhHHHHHHHHh----hcccchHHHHHHHHHHHHHHHHHH
Q 013621 335 EIELKFVNRRNLEDMNLFAIILNQEIRRLSRQVIRVKWSLHAREEIVFELYQ----HLRGNVARTLLEGIRKNAREMIEE 410 (439)
Q Consensus 335 elElk~lnr~~~ed~~l~~~ilr~eI~~LRrQvIrvRRyL~PQREii~eL~~----~L~~~~~r~~L~Ei~~rlrrmlEE 410 (439)
+||+++... ...+ .-.+|-.||++++.+||++.|+++++.+|.. ++..++ +..|+.+.+.+.+++|.
T Consensus 182 ~lE~~l~~~-~~~~-------~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~-~~~l~Dv~dh~~~~~e~ 252 (280)
T 4egw_A 182 ELEDKLLAG-YDRE-------VMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPITTKED-RENFEDLYYDTLQLIDM 252 (280)
T ss_dssp HHHHHTTTC-CCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-Cchh-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccCCHHH-HHHHHHHHHHHHHHHHH
Confidence 999999985 3333 3467999999999999999999999999998 666666 99999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcc
Q 013621 411 QEAVRGRLFTIQDVMQSTVRAWLQVCT 437 (439)
Q Consensus 411 lDAvR~Rl~~IQDemqS~v~e~Lnrrs 437 (439)
.+..|+.+..+.|...|.++.+||.-|
T Consensus 253 ~~~~re~l~~l~d~~~s~is~~~N~iM 279 (280)
T 4egw_A 253 SATYREVLTSMMDITLSLENIKMNQIM 279 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999866
No 8
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=55.90 E-value=14 Score=32.95 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHH
Q 013621 299 GYNVPRTVHEVIAHLACRLSRWDDRLFRKTIFGAADEIEL 338 (439)
Q Consensus 299 g~~gP~s~~e~Ia~La~rLt~~~d~l~~k~L~d~aDelEl 338 (439)
|...|.|.-| ++++++..+++.+ -..-.+.++.|+.
T Consensus 1 ~~~~p~s~~e---~v~~~~w~Y~~~l-~~~a~~~ve~l~~ 36 (185)
T 3r2p_A 1 GDEPPQSPWD---RVKDLATVYVDVL-KDSGRDYVSQFEG 36 (185)
T ss_dssp ---CCCCTTH---HHHHHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred CCCCCCCcHH---HHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 4567777744 4444444455544 4444444444443
No 9
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=49.35 E-value=1.6e+02 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=12.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhHHHHHHhh
Q 013621 313 LACRLSRWDDRLFRKTIFGAADEIELKFVN 342 (439)
Q Consensus 313 La~rLt~~~d~l~~k~L~d~aDelElk~ln 342 (439)
|..+|+...+.+ +..|-..++++-.++.-
T Consensus 5 ~~~~l~~~~e~l-r~~l~~~~eel~~~L~P 33 (273)
T 3s84_A 5 LHERLAKDSEKL-KEEIGKELEELRARLLP 33 (273)
T ss_dssp -------CTTHH-HHHHHHHHHHHHHHHGG
T ss_pred HhhhcccchHHH-HHHHHHHHHHHHHhcCC
Confidence 344555555555 66666666666555544
No 10
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=45.39 E-value=1.7e+02 Score=26.43 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHH
Q 013621 394 RTLLEGIRKNAREMIEEQ--------EAVRGRLFTIQDVMQSTVRAWLQ 434 (439)
Q Consensus 394 r~~L~Ei~~rlrrmlEEl--------DAvR~Rl~~IQDemqS~v~e~Ln 434 (439)
+..|++++.++.-+.+|+ |.+|.++.-+-+++...+++.++
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L~Py~eelr~kl~~~~e 153 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456788888888888874 67888888888888777776654
No 11
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=36.98 E-value=40 Score=26.81 Aligned_cols=32 Identities=13% Similarity=0.368 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 013621 404 AREMIEEQEAVRGRLFTIQDVMQSTVRAWLQV 435 (439)
Q Consensus 404 lrrmlEElDAvR~Rl~~IQDemqS~v~e~Lnr 435 (439)
+++++-|=..+..++|.+|||++--.++-+++
T Consensus 5 lr~iLqERNELKa~vf~lqeEL~yY~~e~l~~ 36 (65)
T 1yhn_B 5 FEQILQERNELKAKVFLLKEELAYFQRELLTD 36 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 67888899999999999999999888776654
No 12
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=35.51 E-value=78 Score=27.00 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=43.4
Q ss_pred eccchhHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013621 372 WSLHAREEIVFELYQHLRGNVARTLLEGIRKNAREMIEEQEAVRGRLFTIQDVMQSTVRAWL 433 (439)
Q Consensus 372 RyL~PQREii~eL~~~L~~~~~r~~L~Ei~~rlrrmlEElDAvR~Rl~~IQDemqS~v~e~L 433 (439)
.|+.-+++.+.+++..|+.+. .++.+++.++++|+.++...+..++.++.....+.|
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~-----~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l 63 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEP-----AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADIL 63 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCT-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477789999999999998764 267777778888888888777777777766655444
No 13
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=27.79 E-value=56 Score=27.89 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=33.0
Q ss_pred CCCcceeeeeeecCCeEEEEeeccCCCCccccccHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHhhh
Q 013621 254 EDDIPIVLRSWQAQNFLITALHVKGPVSSNNVLGITEVQELLFVGGYNVPRTVHEVIAHLACRLSRW 320 (439)
Q Consensus 254 pEDM~VslR~W~~~n~IIS~~h~kg~~~~R~V~aI~eV~e~L~aGg~~gP~s~~e~Ia~La~rLt~~ 320 (439)
|+=+ =++|.|++.+-+=.+. ++ .++ .|..=|.+|+.|+.+.++=
T Consensus 20 ~~Av-EvlRaWVad~glhvsl-------~~-~~~--------------~p~~WG~lLaDlarHaA~a 63 (101)
T 3ic3_A 20 EDAI-EVLRAFVLDGGLSIAF-------MR-AFE--------------DPEMWGLLLVDIARHAARS 63 (101)
T ss_dssp TTCE-EEEEEEEETTEEEEEE-------CS-CCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHcCCeEEEe-------hh-hhc--------------CHHHHHHHHHHHHHHHHHH
Confidence 3335 6899999988877776 55 442 4888899999999887764
No 14
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=21.94 E-value=1.2e+02 Score=22.61 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=26.9
Q ss_pred CCCHHHHHH---HHHHHHhhhhhhhhhhhhhhhhhHHHHHHhh
Q 013621 303 PRTVHEVIA---HLACRLSRWDDRLFRKTIFGAADEIELKFVN 342 (439)
Q Consensus 303 P~s~~e~Ia---~La~rLt~~~d~l~~k~L~d~aDelElk~ln 342 (439)
|+|++|+-+ .|-..+-.+.+.+ .+.|.+++||.--++-+
T Consensus 1 p~~~~dLt~~vq~LL~qmq~kFq~m-S~~I~~riDdM~~RIDd 42 (48)
T 3ci9_A 1 PKTVQDLTSVVQTLLQQMQDKFQTI-SDQIIGRIDDMSSRIDD 42 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHH
Confidence 666666544 3677777777777 78888888877665533
No 15
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=21.80 E-value=1.7e+02 Score=25.99 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=35.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHH
Q 013621 387 HLRGNVARTLLEGIRKNAREMIEEQ--------EAVRGRLFTIQDVMQSTVRAWLQ 434 (439)
Q Consensus 387 ~L~~~~~r~~L~Ei~~rlrrmlEEl--------DAvR~Rl~~IQDemqS~v~e~Ln 434 (439)
-|+..- ...+++++.++.-+++|+ |.+|.++.-.-+++...++..++
T Consensus 99 ~Lr~~L-~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~e 153 (165)
T 1gs9_A 99 AAQARL-GADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDAD 153 (165)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444444 557788888888888875 67899999999988877766543
No 16
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=21.25 E-value=74 Score=27.82 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=27.5
Q ss_pred hhhhhhhhhHHHHHHhhhccCcchhhHHHhhhHHHHH
Q 013621 326 RKTIFGAADEIELKFVNRRNLEDMNLFAIILNQEIRR 362 (439)
Q Consensus 326 ~k~L~d~aDelElk~lnr~~~ed~~l~~~ilr~eI~~ 362 (439)
++.++.++++|.+.+|+. +...++++..| +||+-
T Consensus 105 V~~ID~kL~eLt~~ll~~-ek~~i~iL~~I--~EI~G 138 (145)
T 2qup_A 105 VKEVDRKLLDLTDAVLAK-EKKGLDILNMV--GEIKG 138 (145)
T ss_dssp HHHHHHHHHHHHHHHHSS-SCCHHHHHHHH--HHHHH
T ss_pred hhHHhHHHHHHHHHHHHh-hhhHhHHHHHH--hhhhh
Confidence 789999999999999997 78887777766 45543
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.10 E-value=1.6e+02 Score=31.48 Aligned_cols=10 Identities=50% Similarity=0.840 Sum_probs=0.0
Q ss_pred CCCCCCCCHH
Q 013621 298 GGYNVPRTVH 307 (439)
Q Consensus 298 Gg~~gP~s~~ 307 (439)
||..||+=+.
T Consensus 13 g~~RGpR~vE 22 (562)
T 3ghg_A 13 GGVRGPRVVE 22 (562)
T ss_dssp ----------
T ss_pred CCcCCCcccc
Confidence 4556676555
No 18
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.48 E-value=62 Score=30.84 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=12.6
Q ss_pred cceeecCceEEEecccC
Q 013621 230 VPVRVAGGLLFELLGQS 246 (439)
Q Consensus 230 R~vRvagGLL~~LRGvN 246 (439)
.-.-++++.|++.+.-.
T Consensus 114 v~i~l~~~~lITv~~~~ 130 (339)
T 4ev6_A 114 LGIYIKNNLLLTIHSDK 130 (339)
T ss_dssp CEEEEETTEEEEEESSC
T ss_pred EEEEEECCeeEEeecCC
Confidence 66678888999887543
Done!