Your job contains 1 sequence.
>013623
MLGRVEQVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPNPVGRPGARVVLVR
ASGGDGGGGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNW
NKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE
GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS
IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP
PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ
VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN
LRWYARTASLNIESHFSYI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013623
(439 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077592 - symbol:AT3G06980 species:3702 "Arabi... 657 1.6e-69 2
UNIPROTKB|Q0DVX2 - symbol:LOC_Os03g01830 "DEAD-box ATP-de... 682 4.0e-67 1
TAIR|locus:2118509 - symbol:RH39 "RH39" species:3702 "Ara... 293 1.6e-26 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 271 1.0e-21 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 271 1.0e-21 1
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 260 1.7e-20 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 260 1.7e-20 1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 259 5.6e-20 1
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala... 257 1.8e-19 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 255 2.7e-19 1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 250 4.4e-19 1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 250 4.4e-19 1
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 246 1.7e-18 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 247 2.2e-18 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 247 2.2e-18 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 243 4.1e-18 1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 244 6.9e-18 1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 244 6.9e-18 1
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 237 2.0e-17 1
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 237 2.0e-17 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 238 2.2e-17 1
SGD|S000000441 - symbol:PRP5 "RNA helicase in the DEAD-bo... 242 2.2e-17 1
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 237 5.1e-17 1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 236 6.2e-17 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 234 8.3e-17 1
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor... 233 8.3e-17 1
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 230 8.3e-17 1
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 235 8.5e-17 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 231 1.3e-16 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 233 1.4e-16 1
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 229 1.5e-16 1
UNIPROTKB|F8VRX4 - symbol:DDX54 "ATP-dependent RNA helica... 210 1.6e-16 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 225 1.7e-16 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 229 1.7e-16 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 229 1.7e-16 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 233 2.1e-16 1
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 231 2.1e-16 2
TAIR|locus:2828586 - symbol:AT3G02065 species:3702 "Arabi... 229 2.4e-16 1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 221 2.6e-16 2
UNIPROTKB|E2RKU0 - symbol:DDX28 "Uncharacterized protein"... 229 2.7e-16 1
CGD|CAL0000117 - symbol:DBP7 species:5476 "Candida albica... 231 3.0e-16 1
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 229 3.8e-16 1
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 226 3.8e-16 1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 228 5.0e-16 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 227 5.0e-16 1
TAIR|locus:2010306 - symbol:EMB1586 "embryo defective 158... 227 5.0e-16 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 227 5.3e-16 1
UNIPROTKB|Q90ZF6 - symbol:olvas "VASA" species:8090 "Oryz... 227 6.4e-16 1
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 227 6.5e-16 1
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 231 6.5e-16 2
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 224 7.1e-16 1
UNIPROTKB|Q3MSQ8 - symbol:ddx4 "Probable ATP-dependent RN... 227 8.6e-16 1
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 229 8.9e-16 1
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 229 8.9e-16 1
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 229 8.9e-16 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 222 9.4e-16 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 222 9.4e-16 1
DICTYBASE|DDB_G0274325 - symbol:ddx52 "DEAD/DEAH box heli... 226 9.6e-16 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 225 9.9e-16 1
ZFIN|ZDB-GENE-990415-272 - symbol:vasa "vasa homolog" spe... 226 1.1e-15 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 224 1.1e-15 1
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 234 1.2e-15 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 225 1.3e-15 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 227 1.3e-15 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 224 1.4e-15 1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 224 1.4e-15 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 224 1.5e-15 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 224 1.5e-15 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 224 1.5e-15 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 224 1.6e-15 1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 223 1.9e-15 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 224 1.9e-15 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 224 1.9e-15 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 224 1.9e-15 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 224 1.9e-15 1
UNIPROTKB|F1SUG8 - symbol:DDX50 "Uncharacterized protein"... 224 1.9e-15 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 224 2.3e-15 1
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 223 2.3e-15 1
UNIPROTKB|D6RJA6 - symbol:DDX46 "Probable ATP-dependent R... 221 2.3e-15 2
UNIPROTKB|Q86TM3 - symbol:DDX53 "Probable ATP-dependent R... 222 2.5e-15 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 222 2.8e-15 1
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"... 222 2.9e-15 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 220 2.9e-15 1
MGI|MGI:2182303 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) bo... 222 3.2e-15 1
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"... 222 3.3e-15 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 216 3.7e-15 1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 220 4.0e-15 1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 220 4.0e-15 1
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 220 4.0e-15 1
UNIPROTKB|Q9BQ39 - symbol:DDX50 "ATP-dependent RNA helica... 221 4.2e-15 1
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 220 4.2e-15 1
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 220 4.3e-15 1
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 229 4.7e-15 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 229 4.7e-15 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 229 4.7e-15 2
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 229 4.7e-15 2
ZFIN|ZDB-GENE-041001-215 - symbol:ddx1 "DEAD (Asp-Glu-Ala... 155 4.7e-15 2
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 219 5.0e-15 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 218 5.2e-15 1
UNIPROTKB|F1MMK3 - symbol:DDX50 "Uncharacterized protein"... 220 5.4e-15 1
WARNING: Descriptions of 671 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2077592 [details] [associations]
symbol:AT3G06980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0006655 "phosphatidylglycerol biosynthetic process"
evidence=RCA] [GO:0009658 "chloroplast organization" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006968
GO:GO:0003723 EMBL:AC016827 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 EMBL:AJ296275 EMBL:AY048260 EMBL:AY113064
EMBL:BT002520 IPI:IPI00545954 RefSeq:NP_187354.1 UniGene:At.18753
ProteinModelPortal:Q8GUG7 SMR:Q8GUG7 IntAct:Q8GUG7 STRING:Q8GUG7
PaxDb:Q8GUG7 PRIDE:Q8GUG7 EnsemblPlants:AT3G06980.1 GeneID:819883
KEGG:ath:AT3G06980 KEGG:dosa:Os03t0108600-01 GeneFarm:1029
TAIR:At3g06980 HOGENOM:HOG000078675 InParanoid:Q8GUG7 OMA:ANCRSIS
PhylomeDB:Q8GUG7 ProtClustDB:CLSN2915517 Genevestigator:Q8GUG7
GermOnline:AT3G06980 Uniprot:Q8GUG7
Length = 781
Score = 657 (236.3 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 132/205 (64%), Positives = 161/205 (78%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLR 422
DVLIATPGRF +L+ EGIL L NLR
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLR 528
Score = 66 (28.3 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 145 KGVISSFSRLKAQRVKAVVDK 165
+G+ +SF RLKAQ+VKA+V K
Sbjct: 98 RGLTASFGRLKAQKVKALVGK 118
>UNIPROTKB|Q0DVX2 [details] [associations]
symbol:LOC_Os03g01830 "DEAD-box ATP-dependent RNA helicase
50" species:39947 "Oryza sativa Japonica Group" [GO:0003724 "RNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006968 "cellular defense
response" evidence=IDA] [GO:0009817 "defense response to fungus,
incompatible interaction" evidence=IDA] [GO:0071369 "cellular
response to ethylene stimulus" evidence=IEP] [GO:0071395 "cellular
response to jasmonic acid stimulus" evidence=IEP] [GO:0071446
"cellular response to salicylic acid stimulus" evidence=IEP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 GO:GO:0071395 GO:GO:0006968 EMBL:DP000009
EMBL:AP008209 GO:GO:0009817 GO:GO:0003723 EMBL:AC113930
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000140
GO:GO:0071369 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 GO:GO:0071446 HOGENOM:HOG000078675
EMBL:AK065776 RefSeq:NP_001048702.1 UniGene:Os.43898
ProteinModelPortal:Q0DVX2 STRING:Q0DVX2
EnsemblPlants:LOC_Os03g01830.1 GeneID:4331339 KEGG:osa:4331339
Gramene:Q0DVX2 OMA:PSHIQAM ProtClustDB:CLSN2684806 Uniprot:Q0DVX2
Length = 641
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 166/366 (45%), Positives = 221/366 (60%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTXXXXXXXXXXXXXXXXXSSNWNKDPSQPTTS 130
Y R P++T GA L+D TG VIVWGGT S + P +P
Sbjct: 54 YERVPMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAVL-------STTTRVPDRP--- 103
Query: 131 APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSL 190
+ N S I +F RLKAQ+VK V+ +RSA K+ + R S++ PS
Sbjct: 104 ----KENGRSTS-----IGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSD 152
Query: 191 E--------------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWR 236
E N R+ D A S++ + Y + + G++ G +
Sbjct: 153 ESDEDGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRGADDL-DFPGSEATSGSK 211
Query: 237 SGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQA 296
G+I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQA
Sbjct: 212 RWGNISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQA 268
Query: 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356
MA+ PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAE
Sbjct: 269 MAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAE 328
Query: 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL 416
LASQVL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +
Sbjct: 329 LASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFV 388
Query: 417 QLINLR 422
QL NLR
Sbjct: 389 QLNNLR 394
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 293 (108.2 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 60/147 (40%), Positives = 96/147 (65%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH-HARFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEG 414
Q ++L +D+++ TPGR + I+EG
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEG 257
Score = 59 (25.8 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 128 TTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTT 187
TTS+P N K I RL+ + +K K +V +++E + K +
Sbjct: 50 TTSSPTTETNVTDPDQLKHTIL-LERLRLRHLKESA-KPPQQRPSSVVGVEEESSIRKKS 107
Query: 188 PSL-ENFRELG 197
L ENF+ELG
Sbjct: 108 KKLVENFQELG 118
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 271 (100.5 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 55/156 (35%), Positives = 94/156 (60%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + ++
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFF 164
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 271 (100.5 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 55/156 (35%), Positives = 94/156 (60%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + ++
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFF 164
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 260 (96.6 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 54/142 (38%), Positives = 87/142 (61%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 260 (96.6 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 54/142 (38%), Positives = 87/142 (61%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 259 (96.2 bits), Expect = 5.6e-20, P = 5.6e-20
Identities = 57/152 (37%), Positives = 93/152 (61%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + + PS IQA A P V+ G+ + A Q+G+GKT + LP++QR
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G +K +S + R +IL PT ELA+Q+ + K + SMVV GG + Q
Sbjct: 68 LSSSK--G-NKVSSNNVRALILTPTRELAAQISESIEVYGKY-LNLHSMVVFGGVKINPQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++GVDVL+ATPGR + L + ++ L
Sbjct: 124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQL 155
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 257 (95.5 bits), Expect = 1.8e-19, P = 1.8e-19
Identities = 67/197 (34%), Positives = 110/197 (55%)
Query: 233 RGWRSG---G---SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ 286
+GW+S G SI+++Q P PK + + DG S+K+F ++E+L+RQ
Sbjct: 111 KGWKSNRALGDYFSINSIQSAPPFVPKHKDE-GDDGASASKKTFHCFNLCPELVETLQRQ 169
Query: 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
N + P+ +Q P +++G++ + A ++GSGKTL YLLP+I RL+++ L G +S
Sbjct: 170 NIIHPTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQEDLLAGSERSI---- 225
Query: 347 RVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLENLQEGV-DVLIATP 404
R V++ P+ ELA QV S RS+S + G+ + VV GG T G D+L++TP
Sbjct: 226 RAVVIVPSRELAEQVNSVARSVSERFGLVVK--VVGGGRGVGTIKAAFARGQPDILVSTP 283
Query: 405 GRFMFLIKEGILQLINL 421
G + + + + L L
Sbjct: 284 GALLKALWKRFISLSEL 300
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 255 (94.8 bits), Expect = 2.7e-19, P = 2.7e-19
Identities = 59/153 (38%), Positives = 89/153 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K+ SG R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLAKGH-----KAKSGQTRALVLTPTRELAAQVGESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR + L+++ ++ L
Sbjct: 116 QINKLRHGVDVLVATPGRLLDLVQQNAVKFNQL 148
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 250 (93.1 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 54/140 (38%), Positives = 83/140 (59%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 250 (93.1 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 54/140 (38%), Positives = 83/140 (59%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 246 (91.7 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 55/145 (37%), Positives = 81/145 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++E+L+ + F RP+ IQA A PP ++G+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV + R L+K +TGG
Sbjct: 65 HLLD-----FPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 247 (92.0 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 72/227 (31%), Positives = 115/227 (50%)
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSI---HNLQYEPTDCPK----------QRHKYSA 260
+ +YN+ SN + K+ ID W++ + N E D K +HK +
Sbjct: 45 VPNYNNNSNNYGKNLAPID--WKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITI 102
Query: 261 -DGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
+G+ + S ++G DY+I+SLK N + P+ IQ +P + GK I ++GSG
Sbjct: 103 LEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSG 162
Query: 318 KTLAYLLPV-IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
KTLA++LP + L Q L K G P V++LAPT ELA Q+ C S R
Sbjct: 163 KTLAFILPAFVHILAQPNL----KYGDG-PIVLVLAPTRELAEQIRQECIKFSTES-KIR 216
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ GG + Q+ L++GV +LIA PGR + L+++ + L+ + +
Sbjct: 217 NTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTY 263
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 247 (92.0 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 72/227 (31%), Positives = 115/227 (50%)
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSI---HNLQYEPTDCPK----------QRHKYSA 260
+ +YN+ SN + K+ ID W++ + N E D K +HK +
Sbjct: 45 VPNYNNNSNNYGKNLAPID--WKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITI 102
Query: 261 -DGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
+G+ + S ++G DY+I+SLK N + P+ IQ +P + GK I ++GSG
Sbjct: 103 LEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSG 162
Query: 318 KTLAYLLPV-IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
KTLA++LP + L Q L K G P V++LAPT ELA Q+ C S R
Sbjct: 163 KTLAFILPAFVHILAQPNL----KYGDG-PIVLVLAPTRELAEQIRQECIKFSTES-KIR 216
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ GG + Q+ L++GV +LIA PGR + L+++ + L+ + +
Sbjct: 217 NTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTY 263
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 243 (90.6 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 59/152 (38%), Positives = 87/152 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 244 (91.0 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 78/282 (27%), Positives = 142/282 (50%)
Query: 136 NNDCSIP-SKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
+ND ++ +KK I + K ++ K +++ + + ++ LK E S++ E+
Sbjct: 14 SNDNNLKKTKKNSI--IKKKKKKKKKEILENKDS----NIDNLKNENYRSESEAESESTN 67
Query: 195 E---LGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEP-TD 250
+ L DN++ E+ + N ++ N NK+ K+ + H+ + TD
Sbjct: 68 DSVSLNNIEEDNELN-ENSENNENNENDEDNKNNKNNENNENTSSEEICDHDKNDKTYTD 126
Query: 251 CPKQR---HKYSADGD-FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
K H + + F+S F+EL D + + LK NF+ ++IQA P + GK
Sbjct: 127 EIKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGK 186
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+ A ++GSGKTLA+L+P I L ++ L K+ +G V+I++PT EL Q+ C+
Sbjct: 187 DILGAAKTGSGKTLAFLVPSINILYN--IKFLPKNGTG---VLIISPTRELCLQIYQVCK 241
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
L K +P + ++ GG + + + G+++LIATPGR +
Sbjct: 242 DLCKY-IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLL 282
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 244 (91.0 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 78/282 (27%), Positives = 142/282 (50%)
Query: 136 NNDCSIP-SKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
+ND ++ +KK I + K ++ K +++ + + ++ LK E S++ E+
Sbjct: 14 SNDNNLKKTKKNSI--IKKKKKKKKKEILENKDS----NIDNLKNENYRSESEAESESTN 67
Query: 195 E---LGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEP-TD 250
+ L DN++ E+ + N ++ N NK+ K+ + H+ + TD
Sbjct: 68 DSVSLNNIEEDNELN-ENSENNENNENDEDNKNNKNNENNENTSSEEICDHDKNDKTYTD 126
Query: 251 CPKQR---HKYSADGD-FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
K H + + F+S F+EL D + + LK NF+ ++IQA P + GK
Sbjct: 127 EIKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGK 186
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+ A ++GSGKTLA+L+P I L ++ L K+ +G V+I++PT EL Q+ C+
Sbjct: 187 DILGAAKTGSGKTLAFLVPSINILYN--IKFLPKNGTG---VLIISPTRELCLQIYQVCK 241
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
L K +P + ++ GG + + + G+++LIATPGR +
Sbjct: 242 DLCKY-IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLL 282
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 237 (88.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 54/152 (35%), Positives = 85/152 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G ++ +++ F P+QIQ A P + G I + ++GSGKTLA+++P +QR
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + LSK PRVVIL PT ELA QV S R L ++++++ GG Q
Sbjct: 63 LSKN--RALSKR---DPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ LQ+ + ++ATPGR + +G L L
Sbjct: 117 VKVLQKEPEFIVATPGRLADHLTQGHFHLNGL 148
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 237 (88.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 54/152 (35%), Positives = 85/152 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G ++ +++ F P+QIQ A P + G I + ++GSGKTLA+++P +QR
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + LSK PRVVIL PT ELA QV S R L ++++++ GG Q
Sbjct: 63 LSKN--RALSKR---DPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ LQ+ + ++ATPGR + +G L L
Sbjct: 117 VKVLQKEPEFIVATPGRLADHLTQGHFHLNGL 148
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 238 (88.8 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 49/145 (33%), Positives = 86/145 (59%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF+++G DY++E +K+ F P+ IQ+ +P ++G+ I ++GSGKTL+YLLP I
Sbjct: 99 KSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + + P V++LAPT ELA Q+ ++ + GG +
Sbjct: 159 VHVNAQPML----AHGDGPIVLVLAPTRELAVQIQQEASKFGSSS-KIKTTCIYGGVPKG 213
Query: 388 TQLENLQEGVDVLIATPGRFMFLIK 412
Q+ +LQ+GV+++IATPGR + +++
Sbjct: 214 PQVRDLQKGVEIVIATPGRLIDMME 238
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 242 (90.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 58/173 (33%), Positives = 101/173 (58%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCS-DYMIESLKRQNFLRPSQIQAMA 298
S+ N++ + T CPK K+S +LG S D M+ ++ +F + IQ+ A
Sbjct: 239 SLDNIKIKGTGCPKPVTKWS------------QLGLSTDTMVLITEKLHFGSLTPIQSQA 286
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P ++ G+ I ++GSGKT++YLLP++++++ + + LSK +G P +ILAPT ELA
Sbjct: 287 LPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQ--RPLSKHETG-PMGLILAPTRELA 343
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI 411
Q+ ++ RS+ TGG K Q+ +L+ G ++++ATPGRF+ ++
Sbjct: 344 LQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDIL 396
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 237 (88.5 bits), Expect = 5.1e-17, P = 5.1e-17
Identities = 57/149 (38%), Positives = 85/149 (57%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C ++E++K+ F +P+ IQ+ A+P V++G I Q+G+GKTL YL+P L
Sbjct: 249 CYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---V 305
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
LQ K P +++L PT ELA QV C S G+ RS+ V GG + Q+E L+
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGL--RSVCVYGGGNRDEQIEELK 363
Query: 395 EGVDVLIATPGRFMFLIKEGILQLINLRW 423
+GVD++IATPGR L + L N+ +
Sbjct: 364 KGVDIIIATPGRLNDLQMSNFVNLKNITY 392
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 236 (88.1 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 50/151 (33%), Positives = 89/151 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ +++ + +P+ +Q A P V++G+ ++A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + S+ PRV++L PT ELA+QV + + ++ + F S + GG
Sbjct: 62 RLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYAR-DLKFVSACIFGGVGMN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ + GVDVL+A PGR + L +G + L
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDL 151
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 234 (87.4 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 54/147 (36%), Positives = 82/147 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY+++ +K Q F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 128 TFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 187
Query: 329 RLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q +LQ P V++LAPT ELA Q+ + C K R+ V GG +
Sbjct: 188 HINAQPQLQ-----YGDGPIVLVLAPTRELAVQIQTECSKFGKSS-RIRNTCVYGGAPKG 241
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L GV++ IATPGR + +++ G
Sbjct: 242 PQIRDLARGVEICIATPGRLIDMLEAG 268
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 233 (87.1 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 51/158 (32%), Positives = 94/158 (59%)
Query: 269 SFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
SF++ G + ++ +++ F +PS IQ+ +P ++ G+ CI Q+GSGKTLA+LLP +
Sbjct: 84 SFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPAL 143
Query: 328 QRLRQE--ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ + + + + SP V++L+PT ELA Q+ + S G ++S+ + GG
Sbjct: 144 LHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNG--YKSVCLYGGGS 201
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ Q+E + GV+++IATPGR L +G++ L ++ +
Sbjct: 202 RPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTY 239
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 230 (86.0 bits), Expect = 8.3e-17, P = 8.3e-17
Identities = 49/145 (33%), Positives = 87/145 (60%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK + +I+ + + + +P+ IQ P ++ G + Q+G+GKT A+ LP+I +
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +KST R +IL PT ELASQ++ N S G+ ++ VV GG ++ Q
Sbjct: 64 FGRNKIDIKAKST----RSLILTPTRELASQIMQNIDDYSD-GLGLKTKVVYGGVGRQAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEG 414
+++++ G+D+L+ATPGR + LI+ G
Sbjct: 119 VDSIELGLDILVATPGRLLDLIETG 143
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 235 (87.8 bits), Expect = 8.5e-17, P = 8.5e-17
Identities = 54/158 (34%), Positives = 91/158 (57%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++ ++++ F +P+ IQ+ A+P +++G I Q+G+GKTLAYL+P L Q +
Sbjct: 251 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLAS---QPI 307
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K G P +++LAPT ELA QV + C + G F+S+ + GG +K Q+ + +GVD
Sbjct: 308 PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG--FKSICIYGGGDRKAQINVVTKGVD 365
Query: 399 VLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436
++IATPGR L + L ++ + A A ++ F
Sbjct: 366 IVIATPGRLNDLQMNNFINLKSITYLANEADRMLDMGF 403
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 231 (86.4 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 52/146 (35%), Positives = 79/146 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + Y++++L QNF P+ IQ FP + G+ + Q+GSGKTLAYLLP I
Sbjct: 91 AFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 150
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV KC +S + GG +
Sbjct: 151 HINHQPY--LERGDG--PICLVLAPTRELAQQVQQVADDYGKCS-RLKSTCIYGGAPKGP 205
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 206 QIRDLERGVEICIATPGRLIDFLEAG 231
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 233 (87.1 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 55/156 (35%), Positives = 91/156 (58%)
Query: 253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD 312
K+ K + + K+F+ L SD +S+K F R +QIQA A PP++ G+ + A
Sbjct: 139 KEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAA 198
Query: 313 QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
++GSGKTLA+L+P ++ L + + ++ +G V+++ PT ELA Q + L K
Sbjct: 199 RTGSGKTLAFLIPAVELLYRVKFT--PRNGTG---VLVICPTRELAIQSYGVAKELLKYH 253
Query: 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
V+ GG ++KT+ E L +GV++L+ATPGR +
Sbjct: 254 SQTVGKVI-GGEKRKTEAEILAKGVNLLVATPGRLL 288
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 229 (85.7 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 54/152 (35%), Positives = 86/152 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++ L + +P+ IQA A P V G+ I +GSGKT + LP++Q
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+LR++ G SK++ G+ ++L PT ELA QV + +S + +++ V GG
Sbjct: 69 KLREDISSG-SKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSV 127
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + LI ++L
Sbjct: 128 NIQMLALRGGVDILVATPGRLLDLISSNAIKL 159
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 210 (79.0 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 49/154 (31%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +LLP+ +R
Sbjct: 15 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q L + L K ++ ++ GG R + Q
Sbjct: 75 LKTHSAQ------TGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALILGGDRMEDQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++IATPGR + + E L+L ++ +
Sbjct: 127 FAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 160
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 225 (84.3 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 52/159 (32%), Positives = 92/159 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ + + +++R +++P+ +Q A P ++EG+ + Q+GSGKT A+ P+I
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+ +++ +Q S + P VIL+PT ELASQ+ + S + GV + +V GG
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV--KVVVAYGGTPI 277
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
QL L+ GVD+L+ATPGR L++ + + +R+ A
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLA 316
Score = 50 (22.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 117 SSNWNKDPSQPTTSAPVLRN 136
SSN N PS+P P LRN
Sbjct: 18 SSNQNSHPSRPAYVPPHLRN 37
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 229 (85.7 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 52/152 (34%), Positives = 86/152 (56%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQ A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G K + R +IL PT ELA+Q+ N + +P +S VV GG + Q
Sbjct: 63 LAK----G-PKVRANQVRALILTPTRELAAQIQDNVMLYGR-HLPLKSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ + +G D+L+ATPGR M L + ++ L
Sbjct: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQL 148
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 229 (85.7 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 52/152 (34%), Positives = 86/152 (56%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQ A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G K + R +IL PT ELA+Q+ N + +P +S VV GG + Q
Sbjct: 63 LAK----G-PKVRANQVRALILTPTRELAAQIQDNVMLYGR-HLPLKSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ + +G D+L+ATPGR M L + ++ L
Sbjct: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQL 148
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 233 (87.1 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 71/241 (29%), Positives = 119/241 (49%)
Query: 171 KKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESI-DKNISDYNSRSNKHEKSGT 229
+KTV LK + S TT + N + + DND E + ++ + N++EK
Sbjct: 95 RKTVKKLKADDDKSVTTKTTNNNKSKKSNNNDNDDDDEEVNEEEEEEEEEEDNENEKEIN 154
Query: 230 KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFL 289
K + + + ++ K + + +F+EL S +++++++ F
Sbjct: 155 KKQQQQQQQSNKQTTDKIKVLQSNRKLKKIVEEEL---PTFEELHLSRPLLKAVQKLGFS 211
Query: 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL--RQEELQGLSKSTSGSPR 347
+P+ IQA A P + GK + + +GSGKT A+LLPV++RL R E + + R
Sbjct: 212 QPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAI--------R 263
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
V+IL PT ELA Q S +L++ S ++ GG K Q L++ DV+IATPGR
Sbjct: 264 VLILLPTRELALQCQSVMENLAQFS-NITSCLIVGGLSNKAQEVELRKSPDVVIATPGRL 322
Query: 408 M 408
+
Sbjct: 323 I 323
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 231 (86.4 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 51/145 (35%), Positives = 88/145 (60%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S+K+ F +P+ IQ+ A+P V++G I Q+G+GKTL+YL+P L Q +
Sbjct: 235 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS---QPV 291
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C S G+ +S+ + GG +K Q++++ +GVD
Sbjct: 292 SRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL--KSVCIYGGGNRKGQIQDIMKGVD 349
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
++IATPGR L + L ++ +
Sbjct: 350 IIIATPGRLNDLQMNNFVNLRSITY 374
Score = 42 (19.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 220 RSNKHEKSGTKIDRGWRSGGS 240
R+++H + G RGW S S
Sbjct: 18 RASQHGRDGRGRGRGWSSTSS 38
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 229 (85.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 51/153 (33%), Positives = 86/153 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L+ + P+ IQ A P + GKS + + +GSGKT ++L+P+I
Sbjct: 111 TFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIIS 170
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R + S +P ++LAPT EL QV + L K G+PF++ +V GG
Sbjct: 171 RCTTYHSEHPSDQRR-NPLAMVLAPTRELCVQVEDQAKMLGK-GLPFKTALVVGGDPMSG 228
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
QL +Q+GV+++I TPGR + L+ + ++L N+
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNI 261
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 221 (82.9 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 48/155 (30%), Positives = 88/155 (56%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K++ + G S ++ +LK+ + +P+ IQ+ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 371 KTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMF 430
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + + L + P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 431 RHIMDQ--RALEEGEG--PIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 485
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 486 EQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLR 520
Score = 59 (25.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 25/114 (21%), Positives = 51/114 (44%)
Query: 150 SFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAES 209
S SR + +R ++ ++ +KT N + + R S E +E + + D A++
Sbjct: 93 SRSRSRGRRSRSPSPSKN---RKTENRSRSKERTEGVEVSKEKKKEKDDKEEEKDKDAKN 149
Query: 210 IDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGD 263
D+N + R K + ++ ++ +I L+ E + KQ K+S + D
Sbjct: 150 FDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEM-KQGKKWSLEDD 202
>UNIPROTKB|E2RKU0 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
Length = 527
Score = 229 (85.7 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 63/193 (32%), Positives = 102/193 (52%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLK--RQNFLR 290
RGW++ S + + + +H+ A + S SF +LG ++ +LK LR
Sbjct: 91 RGWKNRRS----RRDHFSIERAQHEVPALRNLSSEGSFADLGLEPPVLRALKDAAPEVLR 146
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
P+ +Q+ PP++ G+ + A ++GSGKTL YLLP++QRL GL+ ++ +PR ++
Sbjct: 147 PTTVQSSTIPPLLRGRHILCAAETGSGKTLGYLLPLLQRLLGRP--GLNPHSTPAPRGLV 204
Query: 351 LAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGF-RQKTQLENLQEGVDVLIATPGRFM 408
L P+ ELA QV + + L G+ R + G R + QL Q DVL+ATPG
Sbjct: 205 LVPSRELAEQVRAVAQPLGISLGLRVRELGGGHGMNRIRVQLSK-QPPADVLVATPGALW 263
Query: 409 FLIKEGILQLINL 421
+K ++ L L
Sbjct: 264 KALKSHLVSLKQL 276
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 231 (86.4 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 84/286 (29%), Positives = 135/286 (47%)
Query: 149 SSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPA- 207
SS + K Q VK V R +K AL +GR K P E G +++ D
Sbjct: 17 SSVAASKNQNVK-VSGGRWKDRRKLQLAL--QGRTKKRQP------ETGVNLIPVDESKR 67
Query: 208 --ESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIH-NLQ----YEPTDCPKQRHKYSA 260
+S DK D N RS E G +G S+ N Q PT K+ +
Sbjct: 68 KRDSEDKVQLDSNKRSKFTESKGENGGKGDSYVSSLFTNNQPTSHLAPTSTTKELTYLPS 127
Query: 261 DGDFFSRKSFKELGCSDYM-IESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGK 318
+ +F LG ++ + I F+ P++IQ + P ++ ++ + Q+GSGK
Sbjct: 128 NAPMKDATNFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGK 187
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
TLA++LP+ +L +E +++ SG +IL PT ELA+Q+ +L++C
Sbjct: 188 TLAFVLPIFHKLMRENKFKINRE-SGL-FAIILTPTRELATQIYGVLETLTRCHHWIVPG 245
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRW 423
+V GG ++K++ L++G ++L+ATPGR L L + LRW
Sbjct: 246 IVIGGEKKKSEKARLRKGCNILVATPGRLADHLENTKTLDISQLRW 291
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 229 (85.7 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 50/151 (33%), Positives = 88/151 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ +++ + +P+ +Q A P V++G+ ++A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL S+ PRV++L PT ELA+QV + + ++ + F S + GG
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYAR-DLKFVSACIFGGVGMN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ + GVDVL+A PGR + L +G + L
Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDL 151
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 226 (84.6 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 51/145 (35%), Positives = 86/145 (59%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++ ++++ F +P+ IQ+ A+P +++G I Q+G+GKTLAYL+P L Q +
Sbjct: 64 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLAS---QPI 120
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K G P +++LAPT ELA QV + C + G F+S+ + GG +K Q+ + +GVD
Sbjct: 121 PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG--FKSICIYGGGDRKAQINVVTKGVD 178
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
++IATPGR L + L ++ +
Sbjct: 179 IVIATPGRLNDLQMNNFINLKSITY 203
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 228 (85.3 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 62/202 (30%), Positives = 103/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGI 201
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
L P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 202 LHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P R + GG K Q+E ++ GV +++AT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 321 PGRLMDLLQKKMVSLDICRYLA 342
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 227 (85.0 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 55/176 (31%), Positives = 89/176 (50%)
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
+ N D ++ H + G + ++F E G Y+++ +K Q F P+ IQ+
Sbjct: 96 VTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQG 155
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
+P + G+ + ++GSGKTL Y LP I + + L + P V+ILAPT ELA
Sbjct: 156 WPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLL----APGDGPIVLILAPTRELA 211
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ + K R+ V GG + Q+ +L GV+V IATPGR + +++ G
Sbjct: 212 VQIQAEISKFGKSS-RIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESG 266
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 227 (85.0 bits), Expect = 5.0e-16, P = 5.0e-16
Identities = 57/192 (29%), Positives = 97/192 (50%)
Query: 239 GSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
G + ++ + K++ FS KSF+ELG D +++SL+R+ F P+ +Q+ A
Sbjct: 81 GKVRAVKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAA 140
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV----VILAPT 354
P +++G ++ +GSGKTLAYLLP++ + + S + R +I+AP+
Sbjct: 141 VPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPS 200
Query: 355 AELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQKTQLENLQEGVD-VLIATPGRFMFLI 411
EL Q++ L G R MV + GG + Q E L++ +++ TPGR +
Sbjct: 201 RELGMQIVREVEKL--LGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEIS 258
Query: 412 KEGILQLINLRW 423
K G L R+
Sbjct: 259 KGGKLHTHGCRF 270
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 227 (85.0 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 51/147 (34%), Positives = 81/147 (55%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F E G Y++ +K Q F +P+ IQ+ +P + G+ + ++GSGKTL+Y LP I
Sbjct: 140 ETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI 199
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + L + P V+ILAPT ELA Q+ + K R+ V GG +
Sbjct: 200 VHINAQPLL----APGDGPIVLILAPTRELAVQIQAEISKFGKSS-RIRNTCVYGGVPKG 254
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L GV+V IATPGR + +++ G
Sbjct: 255 PQIRDLSRGVEVCIATPGRLIDMLEAG 281
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 227 (85.0 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 49/154 (31%), Positives = 83/154 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + ++ R +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 182 TFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQ 241
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + S P VI+APT EL +Q+ R S G R +VV GG
Sbjct: 242 QLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFS-FGTCVRPVVVYGGVNTGY 300
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ +++G +VL TPGR + +I G + L +R
Sbjct: 301 QMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVR 334
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 227 (85.0 bits), Expect = 6.5e-16, P = 6.5e-16
Identities = 62/202 (30%), Positives = 103/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
L P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 202 LHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P R + GG K Q+E ++ GV +++AT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 321 PGRLMDLLQKKMVSLDICRYLA 342
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 231 (86.4 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 51/145 (35%), Positives = 88/145 (60%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S+K+ F +P+ IQ+ A+P V++G I Q+G+GKTL+YL+P L Q +
Sbjct: 226 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS---QPV 282
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C S G+ +S+ + GG +K Q++++ +GVD
Sbjct: 283 SRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL--KSVCIYGGGNRKGQIQDIMKGVD 340
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
++IATPGR L + L ++ +
Sbjct: 341 IIIATPGRLNDLQMNNFVNLRSITY 365
Score = 37 (18.1 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 221 SNKHEKSGTKIDRGWRSGGS 240
+++H + G RGW S S
Sbjct: 11 NSQHGRDGRGRGRGWSSTSS 30
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 224 (83.9 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 49/149 (32%), Positives = 86/149 (57%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG + ++ SL + + P+ IQ A P V++G+ + Q+G+GKTLA+ P++ R
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + T RV++LAPT ELA Q+ ++ + G+ R ++V GG + Q
Sbjct: 69 LSRNASPAPVRGT----RVLVLAPTRELAGQIATSFGTYG-AGLNLRVVMVCGGAKIGGQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ L+ G +L+ATPGR + L+++ + L
Sbjct: 124 IRQLERGAHILVATPGRLIDLMEQRAVSL 152
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 227 (85.0 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 48/155 (30%), Positives = 89/155 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E D + +++ + +++ + IQ + P +V G+ + Q+GSGKT A+LLP++
Sbjct: 287 TFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILA 346
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ + T P +I+APT EL +Q+ + R S G R +V+ GG +
Sbjct: 347 HLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSY-GTCVRPVVIYGGTQMFH 405
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L+ + EG ++L ATPGR + +I++ + L LR+
Sbjct: 406 SLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRY 440
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 229 (85.7 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 521
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 229 (85.7 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 521
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 229 (85.7 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 521
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 222 (83.2 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 54/151 (35%), Positives = 81/151 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + L ++ P+ +QA P V+ G+ + +GSGKT A+ LP++Q
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
RL E + KS +G R ++L PT ELA QV + S S + + GG
Sbjct: 70 RL--SEAKSADKS-AGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++L+ G DVL+ATPGR + L+ L+L
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKL 157
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 222 (83.2 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 54/151 (35%), Positives = 81/151 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + L ++ P+ +QA P V+ G+ + +GSGKT A+ LP++Q
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
RL E + KS +G R ++L PT ELA QV + S S + + GG
Sbjct: 70 RL--SEAKSADKS-AGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++L+ G DVL+ATPGR + L+ L+L
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKL 157
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 226 (84.6 bits), Expect = 9.6e-16, P = 9.6e-16
Identities = 66/219 (30%), Positives = 107/219 (48%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHEKSG--TKIDRGWRSGGSIHNLQYEPTDCPKQRHKYS 259
+N+ +S D + S N NK++K T+ D+ R + N D +
Sbjct: 136 ENENSDDSDDSDDSGKNKNKNKNKKVSKETQEDKHKREIATFRNKHRIKVDGTDIPDPMT 195
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
+R FK Y++ ++ + PS IQ P +++ + + +GSGKT
Sbjct: 196 EFSQLENR--FK---VRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKT 250
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
++ +P++Q L + + +G R VI+APT ELA Q+ N R LSK G PFR V
Sbjct: 251 ASFSIPILQALYEPKKEGF--------RSVIIAPTRELAQQIYRNFRLLSK-GKPFRICV 301
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ ++ ENL + D+LI TP R ++LIKE +L L
Sbjct: 302 LSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLLSL 340
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 225 (84.3 bits), Expect = 9.9e-16, P = 9.9e-16
Identities = 52/146 (35%), Positives = 84/146 (57%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F++ D ++E++ + F P+ IQA +P ++G+ I ++GSGKTLAYLLP +
Sbjct: 165 KMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAL 224
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+ + G P V+ILAPT ELA Q+ R + GV RS + GG +
Sbjct: 225 VHVSAQPRLG----QDDGPIVLILAPTRELAVQIQEESRKFGLRSGV--RSTCIYGGAPK 278
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIK 412
Q+ +L+ GV+++IATPGR + +++
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLE 304
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 226 (84.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 49/155 (31%), Positives = 83/155 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G D + +++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 278 TFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 337
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R + + S P +I+APT EL +Q+ R + G R +VV GG
Sbjct: 338 RFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAY-GTCVRPVVVYGGINTGY 396
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ + +G +VL ATPGR LI G + L +R+
Sbjct: 397 TIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRY 431
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 224 (83.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 54/150 (36%), Positives = 82/150 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ + ++ ++ + P+ IQA A PP++EG I Q+G+GKT AY LPVIQ
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ LS + G R ++LAPT ELA Q+ + RSL + R + GG
Sbjct: 62 KM-------LS-TPRGRVRTLVLAPTRELACQIAESFRSLGQ-RARIRECSIYGGVNMDQ 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDV++A PGR + I G + +
Sbjct: 113 QIRRLRSGVDVVVACPGRLLDHIWRGTIDI 142
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 234 (87.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 50/155 (32%), Positives = 89/155 (57%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K++ + G S ++ +LK+ N+ +P+ IQA A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 357 KTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 416
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + G ++ P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 417 RHILDQRPVGEAEG----PLAVIMTPTRELALQITKECKKFSK-SLALRVVCVYGGTGIS 471
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 472 EQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLR 506
Score = 38 (18.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 195 ELGEHIVDNDVPAESIDKNISDYNSRSNK--HEKSG 228
E+GE + D E + + + +N + K ++K G
Sbjct: 208 EVGEEVDPLDAYMEEVKEEVKKFNMGTMKGANDKKG 243
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 225 (84.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 50/143 (34%), Positives = 79/143 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G +Y+++ +K+ F P+ IQ A+P + G+ + +GSGKTL+Y LP I
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L S P V++LAPT ELA Q+ C K R+ V GG +
Sbjct: 183 HINAQPLL----SPGDGPIVLVLAPTRELAVQIQQECTKFGKSS-RIRNTCVYGGVPRGP 237
Query: 389 QLENLQEGVDVLIATPGRFMFLI 411
Q+ +L GV++ IATPGR + ++
Sbjct: 238 QIRDLIRGVEICIATPGRLLDML 260
Score = 39 (18.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 16/61 (26%), Positives = 20/61 (32%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSAD 261
DN+ K YNSR RG GG Y + R+ Y +D
Sbjct: 5 DNEYSGNYNGKE-DGYNSRGRYGGGYRNNYSRGGGRGGFNDGASYGYDQRGQGRNFYESD 63
Query: 262 G 262
G
Sbjct: 64 G 64
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 227 (85.0 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 56/146 (38%), Positives = 82/146 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E ++IE +KRQ F +P+ IQ+ +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 238 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297
Query: 329 RLRQEE--LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFR 385
+ + ++G G P ++LAPT ELA Q+ S R C R + GG
Sbjct: 298 HIGNQPPIIRG-----EG-PIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSS 351
Query: 386 QKTQLENLQEGVDVLIATPGRFM-FL 410
+ Q +L GV+V+IATPGR + FL
Sbjct: 352 KVPQARDLDRGVEVIIATPGRLIDFL 377
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 224 (83.9 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 68/240 (28%), Positives = 122/240 (50%)
Query: 180 EGRLSKTTPSLENFR--ELGEHIVDNDV---------PAESIDKNISDYNSRSNKHEKSG 228
EG+ ++TT L + EL + +V + P++ +++ S+ + + EK
Sbjct: 41 EGKATETTTELTKDKDVELAKKVVKEEAQKKRKVSHSPSDE-EESESEDEEKKEEDEKDN 99
Query: 229 TKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNF 288
K D G + + ++ + P+ DG K F ELG S+ ++ +K F
Sbjct: 100 VKEDSGKANVPDLPSV--DAVSLPQP------DG---GPKKFTELGLSEKTLQGIKEMGF 148
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
++IQ PP++ G+ + A ++GSGKTLA+L+P I+ L L+ ++ +G V
Sbjct: 149 ETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML--SALRFKPRNGTG---V 203
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
++++PT ELA Q+ R L +V+ GG ++ + E L +GV++LIATPGR +
Sbjct: 204 IVVSPTRELALQIFGVARELLTAHSQTYGIVI-GGANRRAEAEKLTKGVNLLIATPGRLL 262
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 224 (83.9 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 61/202 (30%), Positives = 102/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 141 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGI 200
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
L P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 201 LHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 259
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P + GG K Q+E ++ GV +++AT
Sbjct: 260 LIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVAT 319
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 320 PGRLMDLLQKKMVSLDICRYLA 341
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 224 (83.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 233
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 224 (83.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 233
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 224 (83.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 233
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 224 (83.9 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 68 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 127
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 183
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 184 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 233
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 223 (83.6 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 70/276 (25%), Positives = 139/276 (50%)
Query: 154 LKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSL-ENFREL--GEHIVDNDVPAESI 210
++ +R K DK+S +KT+ L++ + +T + E+ R+L E ++D +
Sbjct: 77 IERKRKKKEEDKQSEEARKTL--LEKHAEIMETQGVIDESERQLMEEEELLDKVTRGGGL 134
Query: 211 DKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK-- 268
+++ ++ K+E+ I WR G I E + ++R S +GD
Sbjct: 135 -LAVAEL-TKGEKYEEP---IVTAWRPPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIG 189
Query: 269 SFKELGCSDYMIESLKRQN-FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
SF E+ ++E +++Q + P+ IQ P + G+ I +GSGKT+ ++LP++
Sbjct: 190 SFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQV----LSNCRSLSKCGVP-FRSMVVTG 382
++E++ L S P +I+ P+ ELA Q+ + +L K G+P R+ + G
Sbjct: 250 MFCLEQEMK-LPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIG 308
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
G Q +++++G+ +++ATPGR ++ + I+ L
Sbjct: 309 GVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINL 344
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 224 (83.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 147 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 206
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 207 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 262
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 263 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 312
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 224 (83.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 147 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 206
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 207 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 262
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 263 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 312
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 224 (83.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 149 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 208
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 209 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 264
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 265 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 314
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 224 (83.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 55/171 (32%), Positives = 86/171 (50%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
YE + +++ GD + +F Y+++ L Q+F P+ IQ FP +
Sbjct: 149 YEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLAL 208
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT ELA QV
Sbjct: 209 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTRELAQQVQQ 264
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
KC +S + GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 265 VADDYGKCS-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 314
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 224 (83.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 52/154 (33%), Positives = 88/154 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + ++K GG ++
Sbjct: 198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITK---KLSVACFYGGTSYQS 251
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ +++ G+D+L+ TPGR ++ G L L LR
Sbjct: 252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLR 285
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 224 (83.9 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 49/149 (32%), Positives = 81/149 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ +++Q F +P+ IQA +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + L + P ++LAPT ELA Q+ R+ + GG + Q
Sbjct: 219 INNQPR--LERGDG--PIALVLAPTRELAQQIQQVAIEFGS-NTHVRNTCIFGGAPKGQQ 273
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+L+ GV+++IATPGR + ++ G L
Sbjct: 274 ARDLERGVEIVIATPGRLIDFLERGTTSL 302
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 223 (83.6 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 49/145 (33%), Positives = 83/145 (57%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
M+E + + F +PS IQ+ A+P +++G I Q+G+GKTLA+LLP + E Q
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLP---GMIHTEYQST 350
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
+ T G V++LAPT ELA Q+ + S G+ +++ V GG + Q+ +L+ G +
Sbjct: 351 PRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGM--KAVCVYGGGNRNMQISDLERGAE 408
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
++I TPGR LI ++ + + +
Sbjct: 409 IIICTPGRLNDLIMANVIDVSTITY 433
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 221 (82.9 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 47/144 (32%), Positives = 80/144 (55%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 324 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 383
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 384 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 438
Query: 388 TQLENLQEGVDVLIATPGRFMFLI 411
Q+ L+ G ++++ TPGR + ++
Sbjct: 439 EQIAELKRGAEIIVCTPGRMIDML 462
Score = 38 (18.4 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
GE + D E + + + +N RS K +KSG + +
Sbjct: 174 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 215
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 222 (83.2 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 46/128 (35%), Positives = 81/128 (63%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S+ R ++P+ IQ+ A+P +++G I+ Q+G+GKTL+YL+P L + Q +
Sbjct: 233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL---DSQPI 289
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA V + C S G+ +S+ + GG + Q+E++ +GVD
Sbjct: 290 SREQRNGPGMLVLTPTRELALHVEAECSKYSYKGL--KSICIYGGRNRNGQIEDISKGVD 347
Query: 399 VLIATPGR 406
++IATPGR
Sbjct: 348 IIIATPGR 355
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 222 (83.2 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 241 IHNL-QYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAM 297
+H++ QY+ + ++R + + G + +F + Y+++ L +QNF P+ IQA
Sbjct: 66 VHHMSQYDVEEYRRKR-EITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQ 124
Query: 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
FP + G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT EL
Sbjct: 125 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTREL 180
Query: 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
A QV K +S V GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 181 AQQVQQVAFDYGKSS-RIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVG 236
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 222 (83.2 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 63/220 (28%), Positives = 114/220 (51%)
Query: 208 ESIDKNISDYNSRSNKHEK---SGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDF 264
E + +SD S+S+K + S ID + + +L + + + +
Sbjct: 77 EGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDNKLEETLTREQ 136
Query: 265 FSRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+F S+ I+ LK + ++L P IQ F PV EGK I ++G+GKT ++
Sbjct: 137 -KEGAFSNFPISEETIKLLKGRGVSYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSF 193
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+P+I+RL++ + + + KS S P+V++LAPT ELA+QV + + +++ G
Sbjct: 194 AIPLIERLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYG 247
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
G ++Q+ +++ G+D+L+ TPGR ++ G L L LR
Sbjct: 248 GTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLR 287
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 220 (82.5 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 69/256 (26%), Positives = 126/256 (49%)
Query: 168 AMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKS 227
A+ N K++ + +K T E+ + + N V E +K R K +
Sbjct: 16 AVESPMTNKKKKKSKKNKHTEENHEVEEVPQEVT-NGVEEELSNKEKKKKRKREEKESEK 74
Query: 228 GTKIDRGWRSGGSIHNLQYEPTDCPKQ--RHKYSADGDFFSRKSFKELGCSDYMIESLKR 285
K D + + +L ++ K K + + + K+F E + +++ K
Sbjct: 75 NKKKDVPEKKLEA-EDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCK- 132
Query: 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL--RQEELQGLSKSTS 343
F +PS IQ+ +P +++G+ I ++GSGKTLA+ +P I + + +++ G SK +
Sbjct: 133 -TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191
Query: 344 GSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
P ++L+PT ELA Q+ R + CG+ +S+ V GG + Q+ ++ GVD++I
Sbjct: 192 --PTCLVLSPTRELAVQISDVLREAGEPCGL--KSICVYGGSSKGPQISAIRSGVDIVIG 247
Query: 403 TPGRFMFLIKEGILQL 418
TPGR LI+ +L+L
Sbjct: 248 TPGRLRDLIESNVLRL 263
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 222 (83.2 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 51/154 (33%), Positives = 87/154 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + +++ GG ++
Sbjct: 195 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQS 248
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ ++ G+D+L+ TPGR ++ G L L LR
Sbjct: 249 QINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLR 282
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 222 (83.2 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 63/220 (28%), Positives = 114/220 (51%)
Query: 208 ESIDKNISDYNSRSNKHEK---SGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDF 264
E + +SD S+S+K + S ID + + +L + + + +
Sbjct: 76 EGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDNKLEETLTREQ 135
Query: 265 FSRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+F S+ I+ LK + ++L P IQ F PV EGK I ++G+GKT ++
Sbjct: 136 -KEGAFSNFPISEETIKLLKGRGVSYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSF 192
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+P+I+RL++ + + + KS S P+V++LAPT ELA+QV + + +++ G
Sbjct: 193 AIPLIERLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYG 246
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
G ++Q+ +++ G+D+L+ TPGR ++ G L L LR
Sbjct: 247 GTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLR 286
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 216 (81.1 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 51/153 (33%), Positives = 85/153 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L S ++ ++ + +P+ IQ A P V+ GK I A Q+G+GKT +++LP+++
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + K + R +IL PT ELA QV ++ +K + SM + GG +
Sbjct: 62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKY-LDISSMAMYGGVDAQE 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q + L GVD+L+ATPGR + + + +L L
Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDEL 153
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 220 (82.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 61/202 (30%), Positives = 102/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 202 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P R + GG K Q+E ++ GV +++AT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 321 PGRLMDLLQKKMVSLDICRYLA 342
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 220 (82.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 61/202 (30%), Positives = 102/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 202 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P R + GG K Q+E ++ GV +++AT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 321 PGRLMDLLQKKMVSLDICRYLA 342
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 220 (82.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 61/202 (30%), Positives = 102/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 142 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 201
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 202 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 260
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P R + GG K Q+E ++ GV +++AT
Sbjct: 261 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 320
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 321 PGRLMDLLQKKMVSLDICRYLA 342
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 221 (82.9 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 51/154 (33%), Positives = 88/154 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + +++ GG ++
Sbjct: 198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQS 251
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ +++ G+D+L+ TPGR ++ G L L LR
Sbjct: 252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLR 285
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 220 (82.5 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 61/202 (30%), Positives = 102/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 160 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 219
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 220 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 278
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P R + GG K Q+E ++ GV +++AT
Sbjct: 279 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 338
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 339 PGRLMDLLQKKMVSLDICRYLA 360
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 220 (82.5 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 61/202 (30%), Positives = 102/202 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W + ++ E + ++++ +GD KSFKE+ ++ LK++
Sbjct: 169 IKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGI 228
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
P+ IQ P ++ G+ I +GSGKTL + LPVI ++E + L S P
Sbjct: 229 HHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR-LPFSKREGPYG 287
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q +L CR L + P R + GG K Q+E ++ GV +++AT
Sbjct: 288 LIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVAT 347
Query: 404 PGRFMFLIKEGILQLINLRWYA 425
PGR M L+++ ++ L R+ A
Sbjct: 348 PGRLMDLLQKKMVSLDICRYLA 369
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 229 (85.7 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 521
Score = 38 (18.4 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
GE + D E + + + +N RS K +KSG + +
Sbjct: 222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 229 (85.7 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 521
Score = 38 (18.4 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
GE + D E + + + +N RS K +KSG + +
Sbjct: 222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 229 (85.7 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 521
Score = 38 (18.4 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
GE + D E + + + +N RS K +KSG + +
Sbjct: 222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 229 (85.7 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 50/155 (32%), Positives = 85/155 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S ++ SLK+ + +P+ IQ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + S P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 432 RHIMDQR----SLEEGEGPIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 486
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 487 EQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLR 521
Score = 38 (18.4 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 197 GEHIVDNDVPAESIDKNISDYNSRSNK-----HEKSGTKIDR 233
GE + D E + + + +N RS K +KSG + +
Sbjct: 222 GEELDPLDAYMEEVKEEVKKFNMRSVKGGGGNEKKSGPTVTK 263
>ZFIN|ZDB-GENE-041001-215 [details] [associations]
symbol:ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-041001-215
GO:GO:0005524 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
CTD:1653 KO:K13177 EMBL:BX649472 EMBL:BX005358 IPI:IPI00511501
RefSeq:NP_001184253.1 UniGene:Dr.19466 ProteinModelPortal:F1R2L8
Ensembl:ENSDART00000023963 GeneID:556790 KEGG:dre:556790
NextBio:20881663 ArrayExpress:F1R2L8 Bgee:F1R2L8 Uniprot:F1R2L8
Length = 740
Score = 155 (59.6 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGV 397
KS+S +PR +I+ P+ ELA Q L+N K R +++ GG K QL L+ GV
Sbjct: 281 KSSSNAPRALIIEPSKELAEQTLNNVNQFKKYVDNPKLRELLIIGGVAAKEQLNVLESGV 340
Query: 398 DVLIATPGRFMFLIKEGILQLINLRW 423
D+++ TPGR LI G L L +R+
Sbjct: 341 DIVVGTPGRLDDLISTGKLDLSQVRF 366
Score = 115 (45.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E ++ L + G V
Sbjct: 63 -IVYETIKDLQEGKKGRSAV 81
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 219 (82.2 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 55/163 (33%), Positives = 89/163 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFKE+ ++ LK++ +P+ IQ P ++ G+ I +GSGKTL + LPVI
Sbjct: 177 KSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI 236
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQ----VLSNCRSLSKCGVP-FRSMVVTG 382
++E + L S P +I+ P+ ELA Q + CR L + +P R + G
Sbjct: 237 MFCLEQEKR-LPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIG 295
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
G K Q+E ++ GV +++ATPGR M L+++ ++ L R+ A
Sbjct: 296 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 338
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 218 (81.8 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 48/146 (32%), Positives = 79/146 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY++ +K + F +P+ IQ +P + G+ + +GSGKTL+Y LP I
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P V++LAPT ELA Q+ + C R+ V GG +
Sbjct: 174 HINAQPLL----APGDGPIVLVLAPTRELAVQIQTECSKFGHSS-RIRNTCVYGGVPKSQ 228
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L G +++IATPGR + +++ G
Sbjct: 229 QIRDLSRGSEIVIATPGRLIDMLEIG 254
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 220 (82.5 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 51/154 (33%), Positives = 88/154 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + +++ GG ++
Sbjct: 198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDVTR---KLSVACFYGGTSYQS 251
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ +++ G+D+L+ TPGR ++ G L L LR
Sbjct: 252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLR 285
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 225 (84.3 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 60/178 (33%), Positives = 95/178 (53%)
Query: 245 QYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
+ E TD +QR G R K+F++ G S ++ ++K+Q + +P+ IQ A P V
Sbjct: 204 EQETTDY-RQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIV 262
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLR-QEELQGLSKSTSGSPRVVILAPTAELASQV 361
+ G+ I ++GSGKT A++LP+I + Q ELQ P VI APT ELA Q+
Sbjct: 263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-----RDEGPIGVICAPTRELAHQI 317
Query: 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI 419
+ SK R V GG + Q + L+ G ++++ATPGR + ++K L ++
Sbjct: 318 FLEAKKFSKA-YGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMM 374
Score = 38 (18.4 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 12 KAAASFGLPLASPPLRRNSNTDK 34
KA GL LA+ L N+D+
Sbjct: 120 KAKKDLGLTLAADALNAGYNSDE 142
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 218 (81.8 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 47/145 (32%), Positives = 87/145 (60%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S++R F +P+ IQ+ ++P +++G I Q+G+GKTL+YL+P + Q +
Sbjct: 212 IMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHS---QPV 268
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C G+ +S+ + GG +K Q++++ +GVD
Sbjct: 269 SRKQRNGPGMLVLTPTRELALQVEAECSKYLYKGL--KSVCIYGGGNRKGQIQDVTKGVD 326
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
++IATPGR L + L ++ +
Sbjct: 327 IIIATPGRLNDLQMNNFVNLRSITY 351
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 219 (82.2 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 49/161 (30%), Positives = 84/161 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ++ D ++ ++K + +P+ +Q A P +++ + + Q+GSGKT A+L P+I
Sbjct: 248 SFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIIS 307
Query: 329 RLRQE---ELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+ + E K + PR ++LAPT ELA Q+ S G P S+V+ G
Sbjct: 308 GILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSY-GSPVSSVVIYG 366
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
G Q+ L G D+L+AT GR + L+ G + L +++
Sbjct: 367 GAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKY 407
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 219 (82.2 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 56/165 (33%), Positives = 91/165 (55%)
Query: 265 FSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+ +F ELG ++I ++ + +Q + P ++EG+ ++ Q+GSGKTLAY
Sbjct: 98 FTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYC 157
Query: 324 LPVIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--- 379
+PV+Q L+ E SK S P ++L PT ELA Q + L K PF +V
Sbjct: 158 IPVVQSLQAME----SKIQRSDGPYALVLVPTRELALQSFDTVQKLLK---PFTWIVPGV 210
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRW 423
+ GG ++K++ L++G+++LI+TPGR + IK + LRW
Sbjct: 211 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRW 255
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 215 (80.7 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 49/141 (34%), Positives = 82/141 (58%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S FK+LG + ++++L NF + ++IQ A P + G+ + + ++GSGKTLA++LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ + L+ + S PR +IL PT ELA QV RS+ G+ + + ++TGG
Sbjct: 63 MLHK----SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSMLG-GLSYTATLITGGEN 116
Query: 386 QKTQLENLQEGVDVLIATPGR 406
Q++ L G ++ATPGR
Sbjct: 117 FNDQVKALARGPRFIVATPGR 137
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 215 (80.7 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 49/141 (34%), Positives = 82/141 (58%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S FK+LG + ++++L NF + ++IQ A P + G+ + + ++GSGKTLA++LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ + L+ + S PR +IL PT ELA QV RS+ G+ + + ++TGG
Sbjct: 63 MLHK----SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSMLG-GLSYTATLITGGEN 116
Query: 386 QKTQLENLQEGVDVLIATPGR 406
Q++ L G ++ATPGR
Sbjct: 117 FNDQVKALARGPRFIVATPGR 137
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 218 (81.8 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 51/159 (32%), Positives = 88/159 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ + + +++R +++P+ +Q A P + G+ + Q+GSGKT A+ P+I
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+ +++ + G P VIL+PT ELA Q+ R S + GV + +V GG
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV--KVVVAYGGTPV 264
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ L+ GVD+L+ATPGR L++ G + L +R+ A
Sbjct: 265 NQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLA 303
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 214 (80.4 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 44/141 (31%), Positives = 79/141 (56%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F +L ++E+++ F RP+Q+QA A P ++G+ + + +G+GKT A+++P +
Sbjct: 3 KTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L + +G R++IL PT ELA QV ++L+K +TGG + +
Sbjct: 63 QYLLD-----FPRRKAGPARILILTPTRELAMQVAEQAQALAK-NTRLNIFTITGGVQYQ 116
Query: 388 TQLENLQEGVDVLIATPGRFM 408
+ L D+++ATPGR +
Sbjct: 117 EHADILATTQDIVVATPGRLL 137
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 214 (80.4 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 44/141 (31%), Positives = 79/141 (56%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F +L ++E+++ F RP+Q+QA A P ++G+ + + +G+GKT A+++P +
Sbjct: 3 KTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPAL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L + +G R++IL PT ELA QV ++L+K +TGG + +
Sbjct: 63 QYLLD-----FPRRKAGPARILILTPTRELAMQVAEQAQALAK-NTRLNIFTITGGVQYQ 116
Query: 388 TQLENLQEGVDVLIATPGRFM 408
+ L D+++ATPGR +
Sbjct: 117 EHADILATTQDIVVATPGRLL 137
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 213 (80.0 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG + +++E ++ RP+ +QA PP+++G+ C+ ++GSGKT A++LPV+Q
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E+ G+ ++L PT ELA Q+ R L K + + VV GG
Sbjct: 63 VL-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCVVVGGLDMVA 112
Query: 389 QLENLQEGVDVLIATPGR 406
Q L V+IATPGR
Sbjct: 113 QALELSRKPHVVIATPGR 130
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 220 (82.5 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 54/144 (37%), Positives = 84/144 (58%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++E++ R F +P+ IQ+ A+P V+ G I Q+G+GKTLAYLLP + + Q +
Sbjct: 289 IMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHM---DGQPM 345
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
+ P +++L PT ELA Q+ + C S G F+S+ + GG + Q++ + GVD
Sbjct: 346 PRDKRNGPGMLVLTPTRELALQIEAECNKYSYKG--FKSICIYGGGDRNAQIKVVTSGVD 403
Query: 399 VLIATPGRFMFLIKEGILQLINLR 422
++IATPGR L +LINLR
Sbjct: 404 IVIATPGRLNDLQMN---ELINLR 424
Score = 41 (19.5 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 8 VMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPN 47
V A AAA P+ LR N + + M LP+L N
Sbjct: 194 VKAAAAAAPAPTPIDWTSLRENRDKYEAMKWQDLPVLKKN 233
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 219 (82.2 bits), Expect = 8.9e-15, P = 8.9e-15
Identities = 56/165 (33%), Positives = 91/165 (55%)
Query: 265 FSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+ +F ELG ++I ++ + +Q + P ++EG+ ++ Q+GSGKTLAY
Sbjct: 227 FTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYC 286
Query: 324 LPVIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--- 379
+PV+Q L+ E SK S P ++L PT ELA Q + L K PF +V
Sbjct: 287 IPVVQSLQAME----SKIQRSDGPYALVLVPTRELALQSFDTVQKLLK---PFTWIVPGV 339
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRW 423
+ GG ++K++ L++G+++LI+TPGR + IK + LRW
Sbjct: 340 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRW 384
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 216 (81.1 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 51/146 (34%), Positives = 79/146 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E ++E ++RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 83 NFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 142
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV S+ +S + GG +
Sbjct: 143 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYSRA-CRLKSTCIYGGAPKGP 197
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 198 QIRDLERGVEICIATPGRLIDFLEAG 223
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 44/134 (32%), Positives = 80/134 (59%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C + ++ ++ + + + IQ A P + G+ + + Q+G+GKT A+ LP++Q++ +
Sbjct: 9 CPE-ILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENP 67
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
+ L +T RV+IL PT ELA+QV N + SK + F + + GG + +TQ + L+
Sbjct: 68 SETLKSNT----RVLILTPTRELAAQVAENVEAYSKY-LNFSVLTIYGGVKVETQAQKLK 122
Query: 395 EGVDVLIATPGRFM 408
G D+++ATPGR +
Sbjct: 123 RGADIIVATPGRLL 136
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 216 (81.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 51/146 (34%), Positives = 79/146 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E ++E ++RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 91 NFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 150
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV S+ +S + GG +
Sbjct: 151 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYSRA-CRLKSTCIYGGAPKGP 205
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 206 QIRDLERGVEICIATPGRLIDFLEAG 231
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 216 (81.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 51/145 (35%), Positives = 78/145 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F E Y+++ + +QN+ P+ IQA +P + GK + Q+GSGKTL+YLLP I
Sbjct: 98 FHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVH 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ Q + G P ++LAPT ELA QV K +S + GG + Q
Sbjct: 158 INH---QPFLEHGDG-PICLVLAPTRELAQQVQQVAAEYGKAS-RIKSTCIYGGAPKGPQ 212
Query: 390 LENLQEGVDVLIATPGRFMFLIKEG 414
+ +L+ GV++ IATPGR + ++ G
Sbjct: 213 IRDLERGVEICIATPGRLIDFLEAG 237
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 216 (81.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 51/155 (32%), Positives = 90/155 (58%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP++
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
++ S++T P++++LAPT ELA QV S +K F + + GG +
Sbjct: 66 NKVT-------SQTT---PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL L+ G V++ TPGR M ++ G L+L L+
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQ 150
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 209 (78.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 50/156 (32%), Positives = 83/156 (53%)
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
D++I ++ + P+ +Q + P V+ G+ + Q+GSGKT +L P++ + Q
Sbjct: 195 DHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPA 254
Query: 337 GLSKSTSGS--------PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQK 387
S +G P +ILAPT EL SQ+ R + + V R VV GG
Sbjct: 255 APPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWV--RPCVVYGGADIG 312
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+QL ++ G D+L+ATPGR + LI+ G + L+N+++
Sbjct: 313 SQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKY 348
Score = 51 (23.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 29 NSNTDKLMNKCVLPLLNPNPVGRPG 53
N+N+ + PL NPN G PG
Sbjct: 90 NTNSGWTATEAGRPLFNPNAYGNPG 114
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 216 (81.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 50/133 (37%), Positives = 84/133 (63%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-VIQRLRQE 333
C ++ ++K+ F +P+ IQ+ A+P +++G I Q+G+GKTL+YL+P I Q
Sbjct: 248 CYPEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQP 307
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
+ L ++ +G P +++L PT ELA QV + C S G+ +S+ V GG + Q+++L
Sbjct: 308 VVFSLQRARNG-PGMLVLTPTRELALQVEAECSKYSYKGL--KSVCVYGGGDRDGQIKDL 364
Query: 394 QEGVDVLIATPGR 406
+GVD++IATPGR
Sbjct: 365 LKGVDIIIATPGR 377
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 213 (80.0 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 49/138 (35%), Positives = 77/138 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG + +++E ++ RP+ +QA PP+++G+ C+ ++GSGKT A++LPV+Q
Sbjct: 6 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E+ G+ ++L PT ELA Q+ R L K + + VV GG
Sbjct: 66 VL-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCVVVGGLDMVA 115
Query: 389 QLENLQEGVDVLIATPGR 406
Q L V+IATPGR
Sbjct: 116 QALELSRKPHVVIATPGR 133
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 218 (81.8 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 51/155 (32%), Positives = 88/155 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G S ++ ++KR+ F +P+ IQ P +++ + + ++GSGKT A++LP+++
Sbjct: 138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ S S R VIL+P+ ELA Q + + ++ G RS+++TGG +
Sbjct: 198 KLK-------SHSGKIGARAVILSPSRELAMQTFNVFKDFAR-GTELRSVLLTGGDSLEE 249
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q + DV+IATPGRF+ L E L L ++ +
Sbjct: 250 QFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEY 284
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 216 (81.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 49/151 (32%), Positives = 80/151 (52%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F E+ DY+++ ++RQ + P+ IQA +P + G + + ++GSGKTL Y+LP I
Sbjct: 281 QDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAI 340
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + Q L + P ++LAPT ELA Q+ R+ V GG +
Sbjct: 341 VHINNQ--QPLQRGDG--PIALVLAPTRELAQQIQQVATEFGSSSY-VRNTCVFGGAPKG 395
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +LQ G +++IATPGR + + G L
Sbjct: 396 GQMRDLQRGCEIVIATPGRLIDFLSAGSTNL 426
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 73/272 (26%), Positives = 132/272 (48%)
Query: 156 AQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHI-VDNDVPAESIDKNI 214
A+ K +K+ + K V+ + ++ + +E+ ++ E + D D A + +I
Sbjct: 2 AKTTKVKGNKKKSDTSKVVSKVSRKRSHEDSESEVEDNEKVVEELDADFDEVAGLLGDDI 61
Query: 215 SDYNSRS-NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKEL 273
D S+S +K EK K D + + E D S++ F F
Sbjct: 62 EDPESKSQSKKEKQKAK-DEAKLEQLTKPQVSNEVPD--NDNDDDSSEDVLFENADF--- 115
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
S+ ++++K F + +++QA PP++ G+ + A ++GSGKTLA+L+P I+ L
Sbjct: 116 --SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL 173
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGFRQKTQL 390
++ K +G+ V+I+ PT ELA Q+ R L + F S +V GG ++ +
Sbjct: 174 KI----KPRNGTA-VIIITPTRELALQIFGVARELMQ----FHSQTCGIVIGGADRRQEA 224
Query: 391 ENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
L +GV++L+ATPGR + +K NL+
Sbjct: 225 TKLAKGVNLLVATPGRLLDHLKNTQFVFSNLK 256
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 73/272 (26%), Positives = 132/272 (48%)
Query: 156 AQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHI-VDNDVPAESIDKNI 214
A+ K +K+ + K V+ + ++ + +E+ ++ E + D D A + +I
Sbjct: 2 AKTTKVKGNKKKSDTSKVVSKVSRKRSHEDSESEVEDNEKVVEELDADFDEVAGLLGDDI 61
Query: 215 SDYNSRS-NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKEL 273
D S+S +K EK K D + + E D S++ F F
Sbjct: 62 EDPESKSQSKKEKQKAK-DEAKLEQLTKPQVSNEVPD--NDNDDDSSEDVLFENADF--- 115
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
S+ ++++K F + +++QA PP++ G+ + A ++GSGKTLA+L+P I+ L
Sbjct: 116 --SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL 173
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGFRQKTQL 390
++ K +G+ V+I+ PT ELA Q+ R L + F S +V GG ++ +
Sbjct: 174 KI----KPRNGTA-VIIITPTRELALQIFGVARELMQ----FHSQTCGIVIGGADRRQEA 224
Query: 391 ENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
L +GV++L+ATPGR + +K NL+
Sbjct: 225 TKLAKGVNLLVATPGRLLDHLKNTQFVFSNLK 256
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 214 (80.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 79/277 (28%), Positives = 131/277 (47%)
Query: 145 KGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDND 204
K + ++ + +K D+ +++ +K + + + K PS + R I D
Sbjct: 44 KAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADKDR-----ISKKD 98
Query: 205 VPAESIDKNISDYNSRSNKHEKSGTKIDRG--WRSGGSIHNLQYEPTDCPKQRHKYS-AD 261
K+ + S E+ G KI + + S HN + E D ++H S AD
Sbjct: 99 KKKSKKGKSKTKEESIEINAEE-GAKIAQPAIGSANASNHNDE-EAYDRYIKKHNISFAD 156
Query: 262 G----DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
+ F EL S + E LK N+ P+ IQA +P ++ G+ + ++GSG
Sbjct: 157 PKSSENLLPILQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSG 214
Query: 318 KTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
KT+A+ +P +Q L GLS + S PRV++++PT ELA Q N SL + G ++
Sbjct: 215 KTVAFGIPALQYLN-----GLSDNKS-VPRVLVVSPTRELAIQTYENLNSLIQ-GTNLKA 267
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
+VV GG K++ + V+I TPGR + LI +G
Sbjct: 268 VVVYGG-APKSEQARAAKNASVIIGTPGRLLDLINDG 303
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 212 (79.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/139 (34%), Positives = 76/139 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG +++++ + P+ IQ A P ++ GK+ + A Q+G+GKT +++LP++ R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
K R +IL PT ELA QV N +K +P +M + GG Q
Sbjct: 63 FADAP-----KIRPKRVRSIILTPTRELALQVEQNINQYAKY-LPLTAMAMYGGVDAAPQ 116
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L EGVD+L+ATPGR +
Sbjct: 117 KKRLIEGVDLLVATPGRLL 135
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 212 (79.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 48/139 (34%), Positives = 76/139 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG +++++ + P+ IQ A P ++ GK+ + A Q+G+GKT +++LP++ R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
K R +IL PT ELA QV N +K +P +M + GG Q
Sbjct: 63 FADAP-----KIRPKRVRSIILTPTRELALQVEQNINQYAKY-LPLTAMAMYGGVDAAPQ 116
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L EGVD+L+ATPGR +
Sbjct: 117 KKRLIEGVDLLVATPGRLL 135
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 213 (80.0 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 53/153 (34%), Positives = 82/153 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G ++ +++++ + P+ IQ A P ++ G Q+G+GKT A++LP+IQ
Sbjct: 5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++ + PR +IL PT ELA+QV N K + ++ GG K
Sbjct: 65 RL------STGRARARMPRCLILCPTRELAAQVAENFEKYGKY-LKLTMALLIGGVSFKE 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q LQ GVDVLIATPGR M G L ++ +
Sbjct: 118 QETLLQRGVDVLIATPGRLMDQFDRGKLLMMGV 150
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 216 (81.1 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 64/234 (27%), Positives = 116/234 (49%)
Query: 190 LENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPT 249
+ F+ E + N + A +D I+ N + +KHE G + G I + E
Sbjct: 1 MSGFQTSDEVDISNSLKAFPVD--IATDNQK-DKHENVGENVSDE-DDGNYIASKLLESN 56
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
K + +G +F+ +G + ++ ++ ++ F P+ IQ P ++EG+ +
Sbjct: 57 RRTKGK---KGNG---KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
Query: 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
++GSGKT A+++P+I+ L+ L+ S + R +IL+P ELA Q + + S
Sbjct: 111 GMARTGSGKTAAFVIPMIEHLKST----LANSNT---RALILSPNRELALQTVKVVKDFS 163
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
K G RS+ + GG + Q L D+++ATPGRF+ L E L+L ++ +
Sbjct: 164 K-GTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEY 216
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 213 (80.0 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 75/293 (25%), Positives = 137/293 (46%)
Query: 141 IPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE-GRLSKTTPSLENFRELGEH 199
I +KG S +A + K K S + + T LK++ +S T + +E+ EH
Sbjct: 28 ILQRKGKASELEE-EADKEKLAEAKPSLLVQAT--QLKRDVPEVSATEQIILQEKEMMEH 84
Query: 200 IVDND--VPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHK 257
+ D + + K I+ Y + GW+ I + + D +++
Sbjct: 85 LSDKKTLMSVRELAKGIT-YTE----------PLLTGWKPPLHIRKMSSKQRDLIRKQWH 133
Query: 258 YSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSG 315
+GD K+FK++ ++++LK + ++P+ IQ P ++ G+ I +G
Sbjct: 134 IIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTG 193
Query: 316 SGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS----LSKC 371
SGKTL ++LP+I QEE+ + + P +I+ P+ ELA Q L +
Sbjct: 194 SGKTLVFVLPMIMIALQEEMM-MPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEA 252
Query: 372 GVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
G P RS++ GG ++QLE ++ GV +++ATPGR ++ + + L R+
Sbjct: 253 GYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRY 305
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 216 (81.1 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 45/151 (29%), Positives = 85/151 (56%)
Query: 272 ELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331
+ G + ++++LK+ N+ +P IQA A P ++ G+ CI ++GSGKTL ++LP+++ ++
Sbjct: 400 QTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK 459
Query: 332 QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE 391
+ P +++APT EL Q+ S+ R SK + + V GG Q+
Sbjct: 460 DQP----PVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKA-LGIICVPVYGGSGVAQQIS 514
Query: 392 NLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 515 ELKRGTEIVVCTPGRMIDILCTSSGKITNLR 545
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 212 (79.7 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 61/198 (30%), Positives = 107/198 (54%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NFLR 290
RGW+ S + + + + + A + SR +F +LG ++ +L++ ++
Sbjct: 95 RGWKHRRS----RQDHFSIERVQQEAPAMRNLSSRGNFVDLGLEPRVLLALQKAVPEIVQ 150
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG--LSKSTSGSPRV 348
P+ +Q+ PP++ G+ + A ++GSGKTL+YLLP+ QRL L+G L +S +PR
Sbjct: 151 PTSVQSKTIPPLLRGRHILCAAETGSGKTLSYLLPLFQRL----LKGPELDSRSSTAPRG 206
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPG 405
++L P+ ELA QV + +SL + + + + + GG R K QL DVL+ATPG
Sbjct: 207 LVLVPSRELAEQVQAVAQSLGRY-LDLQVIELGGGLGMNRLKLQLGKWPSA-DVLVATPG 264
Query: 406 RFMFLIKEGILQLINLRW 423
+K ++ L +L +
Sbjct: 265 ALWKALKSQLISLHHLNF 282
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 212 (79.7 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 40/155 (25%), Positives = 87/155 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + +++ + + + + +Q + P + G+ + Q+GSGKT A+LLP++
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ ++ + + P+ +I+APT EL +Q+ R G R +V+ GG +
Sbjct: 228 RMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVY-GTCIRPVVIYGGTQTGH 286
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ + +G ++L ATPGR + +I++G + L+ +++
Sbjct: 287 SIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKY 321
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 212 (79.7 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 40/155 (25%), Positives = 87/155 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + +++ + + + + +Q + P + G+ + Q+GSGKT A+LLP++
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ ++ + + P+ +I+APT EL +Q+ R G R +V+ GG +
Sbjct: 228 RMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVY-GTCIRPVVIYGGTQTGH 286
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ + +G ++L ATPGR + +I++G + L+ +++
Sbjct: 287 SIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKY 321
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 216 (81.1 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 68/229 (29%), Positives = 106/229 (46%)
Query: 225 EKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIES 282
E GT D ++S G I+ Y+ D P + A GD SF + ++E+
Sbjct: 149 ELFGTADDSHFQSSG-INFDNYD--DIPVE-----ASGDKVPEPITSFTAPPLDELLVEN 200
Query: 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE------ELQ 336
++ F +P+ +Q + P V G+ + Q+GSGKT +L PV+ + E
Sbjct: 201 IQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESN 260
Query: 337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLENLQE 395
G S P ++++APT EL SQ+ + S + V R+ VV GG Q+ N+
Sbjct: 261 GAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWV--RACVVYGGADIGQQMRNMDR 318
Query: 396 GVDVLIATPGRFMFLIKEGILQLINLRWYA-----RTASLNIESHFSYI 439
G D+L+ATPGR L+ G + L N+R+ R + E YI
Sbjct: 319 GCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYI 367
Score = 39 (18.8 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 213 NISDYNSRSNKHEKSGTKIDRG-WRSGG 239
N +N+R N ++ G + RG + +GG
Sbjct: 92 NNGGFNNRGNYNQSFGGRGGRGGFNNGG 119
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 212 (79.7 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 53/153 (34%), Positives = 83/153 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++E+L + +PS IQA P ++ G+ + Q+GSGKT A+ LP++Q
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L EL+ +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NL-DPELK--------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
QL L++G +++ TPGR + +K G L L L
Sbjct: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKL 150
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 217 (81.4 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 45/155 (29%), Positives = 87/155 (56%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K + + G + +++++K+ N+ +P IQ A P ++ G+ CI ++GSGKTL ++LP++
Sbjct: 529 KFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 588
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ ++ + P +++APT EL Q+ S+ R SK + R + V GG
Sbjct: 589 RHIKDQP----PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSK-PLGIRCVPVYGGSGVA 643
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 644 QQISELKRGTEIVVCTPGRMIDILCTSSGKITNLR 678
Score = 44 (20.5 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 157 QRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISD 216
+RVK + G++ ++E R S+ E RE+G D+DV + + + +
Sbjct: 167 ERVKERERREREDGERDRREREKE-RGSRRNRERERSREVGNEESDDDVKRD-LKRRRKE 224
Query: 217 YNSRSNKH-EKS 227
R K EKS
Sbjct: 225 GGERKEKEREKS 236
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 209 (78.6 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 51/153 (33%), Positives = 85/153 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + ++++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K + ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYTK-HLKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ GVDVLIATPGR + + G L L ++
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQ 149
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 211 (79.3 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 50/152 (32%), Positives = 81/152 (53%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL------RQ 332
++E++K F +P+ +Q + P V G+ + Q+GSGKT +L PV+ Q
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLE 391
E QG P VI+APT ELA+Q+ + + + V ++ VV GG QL
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWV--KACVVYGGSPIGNQLR 270
Query: 392 NLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
++ G D+L+ATPGR L++ G + L N+++
Sbjct: 271 EIERGCDLLVATPGRLNDLLERGKISLANVKY 302
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 208 (78.3 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 52/153 (33%), Positives = 80/153 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++++ + P+ +QA A P +E + Q+G+GKT A++LP +Q
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG + PRV++L PT ELA QV R+ + RS + GG
Sbjct: 62 RLSSPP-QGPGRG----PRVLVLTPTRELAQQVTDAVRTYGAF-MRVRSGAILGGMPYHA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
QL L VD ++ATPGR + L+ L L L
Sbjct: 116 QLRLLSAPVDFIVATPGRLVDLLDRRSLDLSRL 148
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 210 (79.0 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 59/185 (31%), Positives = 95/185 (51%)
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
I NLQ + + KQ+ G +R F+ + + +LK+ + P+ IQ
Sbjct: 174 ILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQM 233
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P + G+ + + +GSGKT A+LLPVI R E S +P +IL PT ELA
Sbjct: 234 IPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE---------SKTPSALILTPTRELA 284
Query: 359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
Q+ + L G+P +++++ GG QL LQ+ V V+IATPGR + +IK+ ++
Sbjct: 285 IQIERQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVE 343
Query: 418 LINLR 422
L ++
Sbjct: 344 LCGVK 348
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 209 (78.6 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 48/144 (33%), Positives = 84/144 (58%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+EL S ++++++ F + +QA PP++ G+ + A ++GSGKTLA+L+P I
Sbjct: 42 EKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 101
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGF 384
+ L + K +G+ ++++ PT ELA Q+ R L + F S +V GG
Sbjct: 102 ELLHSLKF----KPRNGTG-IIVITPTRELALQIFGVARELME----FHSQTFGIVIGGA 152
Query: 385 RQKTQLENLQEGVDVLIATPGRFM 408
++ + E L +GV++LIATPGR +
Sbjct: 153 NRRQEAEKLMKGVNMLIATPGRLL 176
>UNIPROTKB|A2VD92 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8355
"Xenopus laevis" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177
EMBL:BC129617 RefSeq:NP_001091352.1 UniGene:Xl.75260
ProteinModelPortal:A2VD92 IntAct:A2VD92 PRIDE:A2VD92
GeneID:100037192 KEGG:xla:100037192 Xenbase:XB-GENE-969102
Uniprot:A2VD92
Length = 740
Score = 147 (56.8 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 32/87 (36%), Positives = 49/87 (56%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+KS +P+ +I+ P+ ELA Q L+N + K R +++ GG K QL L+ G
Sbjct: 280 TKSLPNAPKALIIEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRW 423
VD+++ TPGR LI G L L +R+
Sbjct: 340 VDIVVGTPGRIDDLISTGKLSLSQVRF 366
Score = 114 (45.2 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G V
Sbjct: 63 -IVYETLKDQQEGKKGKASV 81
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 211 (79.3 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 53/164 (32%), Positives = 92/164 (56%)
Query: 265 FSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
FS ++F+EL ++I ++ + +Q + P ++EG+ ++ Q+GSGKTLAY
Sbjct: 100 FSPEAFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYC 159
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV---V 380
+PV+Q L + L + + G P ++L PT ELA Q + L K PF +V +
Sbjct: 160 IPVVQSL--QALTSKIQRSDG-PYALVLVPTRELALQSFDTVQKLLK---PFTWIVPGVL 213
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRW 423
GG ++K++ L++G+++LI+TPGR + IK + +RW
Sbjct: 214 MGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVRW 257
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 209 (78.6 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 58/193 (30%), Positives = 100/193 (51%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NFLR 290
RGW++ + + +++ + A + S+ SF +LG ++ +L+ +R
Sbjct: 95 RGWKN----RRARQDHFSIERKQQEAPALRNLSSKDSFADLGLEPRVLSALQEAAPEVVR 150
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
P+ +Q+ PP++ G+ + A ++GSGKTL Y+LP++QRL + L +PR ++
Sbjct: 151 PTTVQSSTIPPLLGGRHILCAAETGSGKTLGYMLPLLQRLLGQP--SLDSCRIPAPRGLV 208
Query: 351 LAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGF-RQKTQLENLQEGVDVLIATPGRFM 408
L P+ ELA QV + + L S G+ R + G R + QL Q DVL+ATPG
Sbjct: 209 LVPSRELAEQVRAVAQPLGSSLGLQVRELGGGHGMSRIRLQLSK-QPPADVLVATPGALW 267
Query: 409 FLIKEGILQLINL 421
+K ++ L L
Sbjct: 268 KGLKSQLISLEQL 280
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 210 (79.0 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 59/185 (31%), Positives = 95/185 (51%)
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
I NLQ + + KQ+ G +R F+ + + +LK+ + P+ IQ
Sbjct: 174 ILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQM 233
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P + G+ + + +GSGKT A+LLPVI R E S +P +IL PT ELA
Sbjct: 234 IPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE---------SKTPSALILTPTRELA 284
Query: 359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
Q+ + L G+P +++++ GG QL LQ+ V V+IATPGR + +IK+ ++
Sbjct: 285 IQIERQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVE 343
Query: 418 LINLR 422
L ++
Sbjct: 344 LCGVK 348
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 211 (79.3 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 54/164 (32%), Positives = 92/164 (56%)
Query: 265 FSRKSFKELGCSDYMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+ +F+EL +++ +L K N + +Q P ++ GK ++ Q+GSGKTLAY
Sbjct: 151 FTSNTFEELNLHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYG 210
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV---V 380
+P++Q L + +Q K + G P V++ PT ELA Q + L + PF +V +
Sbjct: 211 IPMVQFL--QAIQPKVKRSDG-PLAVVIVPTRELALQSFQMFQKLLR---PFTWIVPGVL 264
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRW 423
GG ++K + L++G++VLI+TPGR + IK + + +RW
Sbjct: 265 MGGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRW 308
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 210 (79.0 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 45/132 (34%), Positives = 83/132 (62%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C ++ ++++ F +P+ IQ+ A+P +++G I Q+G+GKTL+YL+P + +
Sbjct: 248 CYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQP 307
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
+ L ++ +G P +++L PT ELA QV + C S G+ +S+ + GG + Q+++L
Sbjct: 308 V--LQRARNG-PGMLVLTPTRELALQVDAECSEYSYRGL--KSVCIYGGGDRDGQIKDLS 362
Query: 395 EGVDVLIATPGR 406
+G D++IATPGR
Sbjct: 363 KGADIIIATPGR 374
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 211 (79.3 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 70/255 (27%), Positives = 119/255 (46%)
Query: 172 KTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKI 231
K+ + K++ L K PS + E + + A K + + EKS
Sbjct: 90 KSKTSKKKKEPLEKKAPSAKTKEMKAEEPSEEEADAPKPKKTKKGKEANGDVGEKSP--- 146
Query: 232 DRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK-SFKELGCSDYMIESLKRQ--NF 288
G ++G S T P + + + ++ +F S+ ++ LK + NF
Sbjct: 147 --GLKNGLSHPKPDSSSTQAPGEESETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNF 204
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG-SPR 347
L P IQA F V GK I ++G+GKT ++ +P+I++L+ GL + G +P+
Sbjct: 205 LFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQG----GLQERKRGRAPQ 258
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
V++LAPT ELA+QV + ++K GG Q+E ++ G+D+L+ TPGR
Sbjct: 259 VLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYGGQIERMRSGIDILVGTPGRI 315
Query: 408 MFLIKEGILQLINLR 422
++ G L L L+
Sbjct: 316 KDHLQNGKLDLTKLK 330
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 209 (78.6 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 61/209 (29%), Positives = 101/209 (48%)
Query: 217 YNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCS 276
+N+++ TK ++ I L E + K + G R + C
Sbjct: 118 FNNKNTPESSENTK-SYSYKQDAFISELTEEQIERVKAELGIVSVGTEVCRPVIEFQHCR 176
Query: 277 -DYMIE-SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
++E +LK + P+ +Q P + G+ I +GSGKT+A+LLPV+ R Q E
Sbjct: 177 FPTVLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSE 236
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENL 393
S S S P +IL PT ELA Q+ + L + G+P R+ ++ GG QL L
Sbjct: 237 ----SASPS-CPACLILTPTRELAIQIEEQAKELMR-GLPNMRTALLVGGMPLPPQLHRL 290
Query: 394 QEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + ++I TPGR + ++K+ +QL ++R
Sbjct: 291 KHNIKIVIGTPGRLLEILKQKAVQLDHVR 319
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 209 (78.6 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 50/139 (35%), Positives = 82/139 (58%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F L + +S++ F + + IQA + P++EGK + A ++GSGKTLA+L+P I+
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K +G+ V+I++PT ELA Q+ R L K +V+ GG +K +
Sbjct: 181 LVKSNF----KPRNGTG-VIIISPTRELALQIYGVARELMKYHTQTHGIVI-GGASKKPE 234
Query: 390 LENLQEGVDVLIATPGRFM 408
E L++GV++L+ATPGR +
Sbjct: 235 EERLEKGVNLLVATPGRLL 253
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 142 (55.0 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
+IL PT EL QVL +S K +P +S+ V GG + Q+ NL++G D+++ATPGR +
Sbjct: 431 LILLPTRELCLQVLDEIKSFEK-NLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLL 489
Query: 409 FLIKEGILQLI 419
++ G + L+
Sbjct: 490 DFLENGNINLL 500
Score = 118 (46.6 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 46/183 (25%), Positives = 79/183 (43%)
Query: 165 KRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKH 224
K+S N Q R + + + ELG H+ D+ +++ + N +N +
Sbjct: 180 KQSKTNYSYDNDYNQGSRNKRNMSYPDRYEELGSHL--KDIEWDNVKYKMERQNLYNNNY 237
Query: 225 EKSGTKIDRGWRSGGSIHNLQYEPTDCP---------KQRHKY-SADGDFFSR-KSFKEL 273
K D+ + S NL E T+C K+ + Y + DG + F ++
Sbjct: 238 NKCN---DQN-NNQNSNDNLNNEQTNCLSKEDIQNELKKNNIYINKDGIIHNIINKFSDV 293
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR-LRQ 332
C I + F P+ IQ + +P + GK I ++GSGKTLA++LP L+
Sbjct: 294 -CFHESILNYLNNKFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKH 352
Query: 333 EEL 335
+E+
Sbjct: 353 KEI 355
Score = 43 (20.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 199 HIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID 232
HI++N E+ D N +++N+ +N + + D
Sbjct: 383 HIINNY--NENNDNNENNHNNNNNNNNNNNNSYD 414
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 209 (78.6 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 57/200 (28%), Positives = 97/200 (48%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W+ I + E + + + +G+ S +SF+E+ ++ L +
Sbjct: 138 IKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGI 197
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
P+ IQ P V+ G+ I +GSGKTL ++LPVI ++E L + P
Sbjct: 198 KNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYS-LPFERNEGPYG 256
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q ++ + + L CG+P RS + GG L+ + GV +++AT
Sbjct: 257 LIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVAT 316
Query: 404 PGRFMFLIKEGILQLINLRW 423
PGR M ++ + IL L R+
Sbjct: 317 PGRLMDMLDKKILTLDMCRY 336
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 208 (78.3 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 57/196 (29%), Positives = 99/196 (50%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NF 288
+ RGW+ + + + +H+ A + S+ SF +LG ++ +L+
Sbjct: 93 VSRGWKH----RRARQDYFSIERAQHEAPALRNLSSKGSFADLGLEPRVLSALQEAAPEV 148
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
+RP+ +Q+ PP++ G+ + A ++GSGKTL Y+LP++QRL + L S +PR
Sbjct: 149 VRPTTVQSSTIPPLLRGRHILCAAETGSGKTLGYMLPLLQRLLGQP--SLYTSRIPAPRG 206
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPG 405
++L P+ ELA QV + + L + R + GG R + QL +VL+ATPG
Sbjct: 207 LVLVPSRELAEQVRAVAQPLGS-SLGLRVQELGGGHGMSRVRLQLSK-HPPAEVLVATPG 264
Query: 406 RFMFLIKEGILQLINL 421
+K ++ L L
Sbjct: 265 ALWKALKGQLISLAQL 280
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 211 (79.3 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 51/152 (33%), Positives = 85/152 (55%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF+ELG +I +L ++ +P+ IQ A P ++EGK + ++GSGKTLAYLLP++
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQ 386
Q+L + +SK +P IL P+ EL QV + SL + C V +++ +T
Sbjct: 106 QKLFSAD--SVSKKKL-APSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSM-S 161
Query: 387 KTQLENLQEGV-DVLIATPGRFMFLIKEGILQ 417
+ + N G+ ++L++TP G+L+
Sbjct: 162 ASDMRNALAGLPEILVSTPACIPKCFAAGVLE 193
Score = 40 (19.1 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 183 LSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTK 230
+ KT L+ ++ +VD AE +++ +D + E+ K
Sbjct: 1 MGKT--KLKPVEDVNSEVVDEVEKAEEVEEQRNDREQEEEQKEEEAPK 46
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 206 (77.6 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 51/137 (37%), Positives = 74/137 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + +++SLK P+ IQ A P + GK + + ++GSGKTLA+LLP +QR
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + LSK PRV+IL PT ELA QV S R L ++++ V GG Q
Sbjct: 63 VIST--RALSKR---DPRVLILLPTRELAHQVYSQLRLLV-ANTQYKAISVLGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGR 406
+ L + ++ATPGR
Sbjct: 117 AKALAKEPHFIVATPGR 133
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 206 (77.6 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 51/137 (37%), Positives = 74/137 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + +++SLK P+ IQ A P + GK + + ++GSGKTLA+LLP +QR
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + LSK PRV+IL PT ELA QV S R L ++++ V GG Q
Sbjct: 63 VIST--RALSKR---DPRVLILLPTRELAHQVYSQLRLLV-ANTQYKAISVLGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGR 406
+ L + ++ATPGR
Sbjct: 117 AKALAKEPHFIVATPGR 133
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 209 (78.6 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 68/237 (28%), Positives = 120/237 (50%)
Query: 185 KTTPSLENFRE-LGEHIV-DNDVPAE-SIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSI 241
K PS+ NF++ + E + P++ S+ K N+ N+ +KS I ++
Sbjct: 18 KPKPSVNNFKKRVAETGTREKGRPSKRSLPKK--QLNANQNESQKSKLFI----KTSSLF 71
Query: 242 HNLQYEPTDCPKQRHK--YSADGDFFSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMA 298
N P D P+ K + F+ SF +L ++I ++ + +Q
Sbjct: 72 RN---NP-DIPEIHRKAVQQVQENVFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQT 127
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P +++GK ++ Q+GSGKTLAY +P++Q L + +Q + + G P ++L PT ELA
Sbjct: 128 IPVLLQGKDALVRSQTGSGKTLAYGIPLVQSL--QGMQSKIQRSDG-PYALVLVPTRELA 184
Query: 359 SQVLSNCRSLSKCGVPFRSMV---VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK 412
Q + L K PF +V + GG ++K++ L++G+++LI+TPGR + IK
Sbjct: 185 LQTFDTIQKLLK---PFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 238
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 209 (78.6 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 62/237 (26%), Positives = 121/237 (51%)
Query: 197 GEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRH 256
G++ N++ A + S + +R + E+ ++ G SG I+ +YE + P +
Sbjct: 168 GQNTRWNNLDAPP-SRGTSKWENRGARDERIEQELFSGQLSG--INFDKYE--EIPVE-- 220
Query: 257 KYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
A GD + F +L +++ E++K + RP+ +Q + P + G+ + Q+
Sbjct: 221 ---ATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQT 277
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGS-------PRVVILAPTAELASQVLSNCRS 367
GSGKT A+L+P++ + Q+ + +S + S P ++L+PT EL+ Q+ + R
Sbjct: 278 GSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRK 337
Query: 368 LSKCGVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ P S ++ GG K Q+ L+ G +LIATPGR + ++ +G++ + R+
Sbjct: 338 FAY-RTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRY 393
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 207 (77.9 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 57/164 (34%), Positives = 95/164 (57%)
Query: 266 SRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
SR SF +LG ++ +L+ ++P+ +Q+ PP++ G+ + A ++GSGKTL+YL
Sbjct: 124 SRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYL 183
Query: 324 LPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
LP+ QRL R +L S+S + +PR ++L P+ ELA QV + +SL + + + + G
Sbjct: 184 LPLFQRLLRGSDLD--SRSFT-APRGLVLVPSRELAEQVQAVAQSLGGY-LGLQVIELGG 239
Query: 383 GF---RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
G R K QL + DVL+ATPG +K ++ L +L +
Sbjct: 240 GLGMSRLKLQLYR-RPAADVLVATPGALWKALKSQLISLQHLNF 282
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 209 (78.6 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 71/288 (24%), Positives = 129/288 (44%)
Query: 146 GVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDV 205
GV+ +A + R A ++ A K++ + S P + R +
Sbjct: 6 GVLPQVPEPRAAVFRTFSKPRPAHARRQAAATKRKCQASSEAPPAKR-RSKASFLPAKKT 64
Query: 206 PAESIDKNISDYNSR--SNKHEKSGTKI-DRGWRSGGSIHNLQYEPTDCPKQRHKY--SA 260
A+ + + R S K +G + D+ + G +L + P+
Sbjct: 65 AAKETRRTLKGKAQRTFSPKKPSAGARDGDQERKPGAKTSSLFKNNPEIPELPRPVVKQV 124
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
F+ +F+ L ++I ++ + +Q + P ++EG+ ++ Q+GSGKT
Sbjct: 125 QEKVFTSDAFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKT 184
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
LAY +PV+Q L + +Q + G P +IL PT ELA Q + L K PF +V
Sbjct: 185 LAYCIPVVQSL--QAMQSKIQRGDG-PYALILVPTRELALQSFDTVQKLLK---PFTWIV 238
Query: 380 ---VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRW 423
+ GG ++K++ L++G+++LI+TPGR + IK + +RW
Sbjct: 239 PGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFRQIRW 286
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 210 (79.0 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 49/154 (31%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +LLP+ +R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q L + L K ++ ++ GG R + Q
Sbjct: 158 LKTHSAQ------TGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALILGGDRMEDQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++IATPGR + + E L+L ++ +
Sbjct: 210 FAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 205 (77.2 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 50/152 (32%), Positives = 80/152 (52%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK G + + + P+ IQA A P V+ G+ + Q+G+GKT A+ LP++ R
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+Q E G R +++APT ELA Q+ + +L + RS+ V GG Q
Sbjct: 63 LQQGE--------RGRVRALVIAPTRELAEQINDSFVTLGR-QTRLRSVTVYGGVGVNPQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L+ G +V++A PGR + I +G + L L
Sbjct: 114 VQKLKAGAEVVVACPGRLLDHIAQGTIDLSRL 145
>UNIPROTKB|Q5XH91 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003712 "transcription cofactor activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033677 "DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GeneTree:ENSGT00660000095174
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HSSP:P10081 HOGENOM:HOG000251633 EMBL:CR855610
EMBL:BC084181 RefSeq:NP_001011133.1 UniGene:Str.3470
ProteinModelPortal:Q5XH91 STRING:Q5XH91 PRIDE:Q5XH91
Ensembl:ENSXETT00000038646 GeneID:496549 KEGG:xtr:496549
Xenbase:XB-GENE-969096 InParanoid:Q5XH91 Bgee:Q5XH91 Uniprot:Q5XH91
Length = 740
Score = 145 (56.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVP-FRSMVVTGGFRQKTQLENLQEG 396
+K+ +P+ +I+ P+ ELA Q L+N + K P R +++ GG K QL L+ G
Sbjct: 280 AKNLPNAPKALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRW 423
VD+++ TPGR LI G L L +R+
Sbjct: 340 VDIVVGTPGRIDDLISTGKLNLSQVRF 366
Score = 113 (44.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G V
Sbjct: 63 -IVYETLKDQQEGKKGKTSV 81
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 205 (77.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 59/170 (34%), Positives = 86/170 (50%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSR---KSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
N + E ++ ++ + +GD + K+FKELG D + E+ ++ F P+ IQ A
Sbjct: 18 NKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAI 77
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR-VVILAPTAELA 358
P V+ + I Q+GSGKT A+ LPVIQ L SP V+LAPT ELA
Sbjct: 78 PVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP----------SPFFAVVLAPTRELA 127
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
Q+ ++ + RS+V+ GG TQ L + VL+ TPGR M
Sbjct: 128 YQISEQFEAIGG-SIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 205 (77.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 50/153 (32%), Positives = 83/153 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ LG S+++I+ K+ RP+ +Q P +++G+ C+ ++GSGKT A++LPV+Q
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L E+ G+ ++L PT ELA Q+ R L K + + ++ GG T
Sbjct: 63 KL-SEDPYGVF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVT 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q L + V++ATPGR I+ INL
Sbjct: 113 QGLELSKKPHVVVATPGRLADHIRSS--DTINL 143
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 207 (77.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 55/145 (37%), Positives = 76/145 (52%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF EL +I++ K N+ +P+ IQ+ A PP +EG I Q+GSGKT A+ +P
Sbjct: 79 SFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIP 138
Query: 326 VIQRLRQEELQGLSKSTSGSPRVV-ILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGG 383
++ RL ++ P ILAPT ELA Q+ SL S GV RS + GG
Sbjct: 139 ILNRLWHDQ----------EPYYACILAPTRELAQQIKETFDSLGSLMGV--RSTCIVGG 186
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q +L ++IATPGR M
Sbjct: 187 MNMMDQARDLMRKPHIIIATPGRLM 211
Score = 39 (18.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 161 AVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFREL 196
A +K+ + K+ + + + + S E+F EL
Sbjct: 51 ATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSEL 86
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 207 (77.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 50/154 (32%), Positives = 85/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ G + + +LK + P+ IQ P + G+ + + +GSGKT A+LLPVI +
Sbjct: 211 FEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMK 270
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQKT 388
+ E + +P +ILAPT ELA Q+ + L G+P R++++ GG
Sbjct: 271 VLNE---------TETPSALILAPTRELAIQIERQAKELM-AGLPNMRTVLLVGGLPLPP 320
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL L++ V V+IATPGR + ++++ +QL ++
Sbjct: 321 QLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIK 354
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 206 (77.6 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 50/155 (32%), Positives = 84/155 (54%)
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ---- 332
+ ++E++K +F +P+ +Q + P V +G+ + Q+GSGKT +L P+ L +
Sbjct: 163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222
Query: 333 ---EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKT 388
E+ Q S G P ++LAPT ELA+Q+ R + + V R VV GG
Sbjct: 223 PVPEKAQSFY-SRKGYPSALVLAPTRELATQIFEEARKFTYRSWV--RPCVVYGGAPIGN 279
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ + G D+L+ATPGR L++ G + L N+++
Sbjct: 280 QMREVDRGCDLLVATPGRLNDLLERGKVSLANIKY 314
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 193 (73.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 42/148 (28%), Positives = 78/148 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + ++ + + + + +Q + P ++ G+ + Q+GSGKT A+LLP++
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + + P +I+APT EL +Q+ R S G R++V+ GG +
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFS-FGTCVRAVVIYGGTQLGH 407
Query: 389 QLENLQEGVDVLIATPGRFMFLI-KEGI 415
+ + +G ++L ATPGR M +I KE I
Sbjct: 408 SIRQIVQGCNILCATPGRLMDIIGKEKI 435
Score = 59 (25.8 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 34/111 (30%), Positives = 45/111 (40%)
Query: 183 LSKTTPSLENFRELGEHIVD-NDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSI 241
+S P E R GE+ + N PA S + + D SR + KSG + SG +
Sbjct: 14 MSSYVPIFEKDRYSGENGDNFNRTPASSSE--MDDGPSRRDHFMKSG------FASGRNF 65
Query: 242 HNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPS 292
N + +C K R S G F KSF G S+ E F R S
Sbjct: 66 GNR--DAGECNK-RDNTSTMGGFGVGKSFGNRGFSNSRFEDGDSSGFWRES 113
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 202 (76.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 49/153 (32%), Positives = 80/153 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L + ++++L + +P+ IQ A P ++ + + Q+G+GKT A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + S + + R ++L PT ELA QV + +K G R + GG +
Sbjct: 62 LLMADNQ---SDHAAKAIRALVLVPTRELALQVQQSFVKYAK-GTDIRVGIAYGGVSIEA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q G+DVLIATPGR + +++G L L L
Sbjct: 118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQL 150
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 202 (76.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 49/153 (32%), Positives = 80/153 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L + ++++L + +P+ IQ A P ++ + + Q+G+GKT A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + S + + R ++L PT ELA QV + +K G R + GG +
Sbjct: 62 LLMADNQ---SDHAAKAIRALVLVPTRELALQVQQSFVKYAK-GTDIRVGIAYGGVSIEA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q G+DVLIATPGR + +++G L L L
Sbjct: 118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQL 150
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 209 (78.6 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 59/226 (26%), Positives = 113/226 (50%)
Query: 191 ENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTD 250
+ F E D++ A+ +KN + ++ + K +KS K + S + P D
Sbjct: 159 DQFNSEDEEFYDDEKQAKKSNKN-KNADADNKKSKKSNKKEEIE-----SSEKFESFPMD 212
Query: 251 CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
++ + + F+ + + +++++ ++ F P+ IQ + P +++G +
Sbjct: 213 ENNEQEEETTSKKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVG 272
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKT A+++P+IQ+L ST+ R VIL+PT ELA Q + S+
Sbjct: 273 MARTGSGKTGAFVIPMIQKLGDH-------STTVGVRAVILSPTRELAIQTFKVVKDFSQ 325
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF-LIKEGI 415
G R++++ GG + Q +L D++IATPGR M L++ G+
Sbjct: 326 -GTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLETGM 370
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 205 (77.2 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 58/185 (31%), Positives = 96/185 (51%)
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
I NLQ + + K++ G +R F+ G + + +LK + P+ IQ
Sbjct: 175 ILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQM 234
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P + G+ + + +GSGKT A+LLPVI R E S +P +IL PT ELA
Sbjct: 235 IPVGLLGRDVLASADTGSGKTAAFLLPVITRALCE---------SKTPSALILTPTRELA 285
Query: 359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
Q+ + + L G+P +++++ GG QL L++ V V+IATPGR + +IK+ ++
Sbjct: 286 IQIENQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVE 344
Query: 418 LINLR 422
L ++
Sbjct: 345 LCGIK 349
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 199 (75.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 57/229 (24%), Positives = 110/229 (48%)
Query: 194 RELGEHIVDNDVPAESID-KNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCP 252
++ + + D D A SI + I + R + E + ++D+ W S + +++
Sbjct: 271 KKYAKALEDRDREAGSIRAREILEMERR-RREESTRNQLDKHW-SEKKLEHMRERDWRIF 328
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
K+ + G +S+ E G ++E + R + P+ IQ A P ++ + I
Sbjct: 329 KEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIG 388
Query: 311 ADQSGSGKTLAYLLPVIQRLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
+GSGKT A+LLP++ + + + + P ++LAPT ELA Q+ + +
Sbjct: 389 VAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFT 448
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ + F + + GG + Q +L+ G +++IATPGR + I+ +L L
Sbjct: 449 E-PLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVL 496
Score = 53 (23.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 21/85 (24%), Positives = 31/85 (36%)
Query: 121 NKDPSQPTTSAPVLRNNDC-SIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQ 179
N D PT A + ND + S K V F+ +A + K+ MG +
Sbjct: 155 NGDGPTPTGPAAMRSRNDSGTTKSDKKVDKRFNEEDEAAAQAALIKQRYMGADQTSNFSA 214
Query: 180 EGRLSKTTPSLENFRELGEHIVDND 204
+ + +TT NF E D
Sbjct: 215 KKKRKRTTDRKFNFEWNAEEDTSGD 239
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 205 (77.2 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 63/232 (27%), Positives = 112/232 (48%)
Query: 178 KQEGRLSKTTPSLENFRELGEHIVDNDVP-AESIDKNISDYNSRSNKHEKSGTKIDRGWR 236
K E + K E +E + + ND AE + ++ DY + E+ D+
Sbjct: 3 KSELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDY-----EQEEENEDADQNTS 57
Query: 237 SGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQA 296
L E D Q+ + F +L S+ + +++K F ++IQ
Sbjct: 58 VESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQK 117
Query: 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356
+ PP++ G+ + A ++GSGKTLA+L+P I+ L + K +G+ V+I++PT E
Sbjct: 118 RSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKF----KPRNGTG-VIIISPTRE 172
Query: 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
LA Q+ + L K +V+ GG ++ + + L +GV++L+ATPGR +
Sbjct: 173 LALQIFGVAKELLKYHHQTFGIVI-GGANRRAEADKLVKGVNLLVATPGRLL 223
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 194 (73.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 45/144 (31%), Positives = 76/144 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G D +++++ +Q+ P+ IQ A P + G+ I ++GSGKT ++ P I
Sbjct: 306 SFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSIS 365
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L K P + LAPT ELA Q+ SK ++ V+ GG ++
Sbjct: 366 HIMDQPY--LEKGDG--PIALFLAPTRELAHQIYLETLKYSKY-FKLKTTVLYGGVSKQQ 420
Query: 389 QLENLQEGVDVLIATPGRFMFLIK 412
Q + L+ G ++++ATPGR + +IK
Sbjct: 421 QCKELKAGCEIIVATPGRLIDMIK 444
Score = 61 (26.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 22/101 (21%), Positives = 48/101 (47%)
Query: 172 KTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKS--GT 229
K V+A EG ++ F +I +N+ + + N ++ N+ +N + K+ GT
Sbjct: 3 KRVSAFGAEGDDEPQEKPMKPFISFSSNINNNNNSNNNNNNNNNNNNNNNNNNNKNNIGT 62
Query: 230 KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGD----FFS 266
I+ ++ +I+N + P ++ +++ + D FFS
Sbjct: 63 GINLNIKNNNNINN-NNNKSGFPVKKSRFNGEDDDDDYFFS 102
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 202 (76.2 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 48/141 (34%), Positives = 81/141 (57%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ FK+LG +++++ F P+ IQ A P ++EG + + +G+GKT AYLLPV+
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+++ + +V+I+ PT ELA QV L K + R++ V GG +
Sbjct: 62 QRIQRGK----------KAQVLIVTPTRELALQVADEVAKLGKY-LKVRALAVYGGQAIE 110
Query: 388 TQLENLQEGVDVLIATPGRFM 408
Q+ L++GV+V++ TPGR +
Sbjct: 111 RQIRGLRQGVEVIVGTPGRIL 131
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 202 (76.2 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 48/141 (34%), Positives = 81/141 (57%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ FK+LG +++++ F P+ IQ A P ++EG + + +G+GKT AYLLPV+
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+++ + +V+I+ PT ELA QV L K + R++ V GG +
Sbjct: 62 QRIQRGK----------KAQVLIVTPTRELALQVADEVAKLGKY-LKVRALAVYGGQAIE 110
Query: 388 TQLENLQEGVDVLIATPGRFM 408
Q+ L++GV+V++ TPGR +
Sbjct: 111 RQIRGLRQGVEVIVGTPGRIL 131
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 204 (76.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 64/198 (32%), Positives = 100/198 (50%)
Query: 228 GTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ- 286
G K R R SI Q E P R K S+ G SF +LG ++ +L+
Sbjct: 96 GWKSRRARRDHFSIERAQQE---APAVR-KLSSKG------SFADLGLEPRVLHALQEAA 145
Query: 287 -NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345
++P+ +Q+ P ++ G+ + A ++GSGKTL+YLLP++QRL + L +
Sbjct: 146 PEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQP--SLDSLPIPA 203
Query: 346 PRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIAT 403
PR ++L P+ ELA QV + + L + G+ R + G R+ + QL Q DVL+AT
Sbjct: 204 PRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSR-QPSADVLVAT 262
Query: 404 PGRFMFLIKEGILQLINL 421
PG +K ++ L L
Sbjct: 263 PGALWKALKSRLISLEQL 280
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 205 (77.2 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 57/185 (30%), Positives = 96/185 (51%)
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
I L+ + + KQ+ S G +R F+ G + + ++LK+ + P+ IQ
Sbjct: 174 IVTLKEDQIETLKQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQM 233
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P + G+ + + +GSGKT A+LLPVI R E+ +P +IL PT ELA
Sbjct: 234 IPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSEDK---------TPSALILTPTRELA 284
Query: 359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
Q+ + L G+P +++++ GG QL L++ V V+IATPGR + +IK+ +
Sbjct: 285 IQIERQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVS 343
Query: 418 LINLR 422
L ++
Sbjct: 344 LSGIK 348
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 207 (77.9 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 83/318 (26%), Positives = 145/318 (45%)
Query: 122 KDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEG 181
K+ P T V++N + PS + K +++K + +G+K+ N
Sbjct: 105 KEVVSPKTKK-VIKNEE---PS----VEEIDAPKPKKMKKEKEMNGGIGEKSANLKNGFS 156
Query: 182 RLSKTTPSLENFRELGEHIVDNDVPAES--IDKNIS---DYNSRSNKHEKSGTKIDRG-- 234
+ S E E ++ ++ +D+++ DY N++ S G
Sbjct: 157 HSGLDSDSKEAATEESNSELEQKQSSKKNRLDQHLKFFLDYKKFKNQNRNSLNYSSVGHS 216
Query: 235 --WRSGGS--IHNLQYEPTDCPKQRHKYSADGDFFS--RK--SFKELGCSDYMIESLKRQ 286
+ S G+ I + + D P + +S D + S +K +F S+ I+ LK +
Sbjct: 217 DFFLSNGANMIIIISFSNLDLPAEVFVFSVDLEEISVEQKEGAFSNFPISEETIKLLKAR 276
Query: 287 N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344
FL P IQA F V GK I ++G+GKT ++ +P+I++L Q ELQ +
Sbjct: 277 GVTFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-QGELQ--DRKRGR 331
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
+P+V++LAPT ELASQV + ++K GG Q++ ++ G+D+L+ TP
Sbjct: 332 APQVLVLAPTRELASQVSRDFSDITK---KLAVACFYGGTPYGGQIDRMRNGIDILVGTP 388
Query: 405 GRFMFLIKEGILQLINLR 422
GR ++ L L L+
Sbjct: 389 GRIKDHLQNNKLDLTKLK 406
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 205 (77.2 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 58/185 (31%), Positives = 96/185 (51%)
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
I NLQ + + K++ G +R F+ G + + +LK + P+ IQ
Sbjct: 175 ILNLQEDQIENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQM 234
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P + G+ + + +GSGKT A+LLPVI R E S +P +IL PT ELA
Sbjct: 235 IPVGLLGRDVLASADTGSGKTAAFLLPVITRALCE---------SKTPSALILTPTRELA 285
Query: 359 SQVLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
Q+ + + L G+P +++++ GG QL L++ V V+IATPGR + +IK+ ++
Sbjct: 286 IQIENQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVE 344
Query: 418 LINLR 422
L ++
Sbjct: 345 LCGIK 349
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 207 (77.9 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 48/154 (31%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT A+L+P+ ++
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ + Q +G+ R +IL PT ELA Q + + L K R+ ++ GG Q
Sbjct: 140 LKAPQAQ------TGA-RALILTPTRELALQTMKFTKELGKF-TGLRTALILGGDSMDDQ 191
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++I TPGR M +I+E L+L ++ +
Sbjct: 192 FAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEY 225
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 202 (76.2 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 51/153 (33%), Positives = 85/153 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
S +G S +++++K + + IQ A P + +G + + Q+G+GKT A+ LP++
Sbjct: 2 SVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILD 61
Query: 329 RLRQ------------EELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPF 375
+ + +E KS SG R +IL PT ELA+QV N + S+ +P
Sbjct: 62 AIAKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQY-LPI 120
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
+S VV GG + +Q + L++G+DVL+ATPGR +
Sbjct: 121 KSGVVYGGGKMASQTKMLKQGLDVLVATPGRLL 153
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 202 (76.2 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 47/149 (31%), Positives = 82/149 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++ ++ + + +Q+Q P + GK + Q+G+GKT A+ LPV+++
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K R +++ PT ELA QV +N + S+ +P +++ V GG Q
Sbjct: 63 LAAKPAD---KPLL---RALVMTPTRELAIQVCANIQKYSQF-LPLKTLAVYGGANMNPQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ +++GVD+L+ATPGR +I + L L
Sbjct: 116 RKGVEQGVDILVATPGRLFDIIGQFNLDL 144
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 202 (76.2 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 47/149 (31%), Positives = 82/149 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++ ++ + + +Q+Q P + GK + Q+G+GKT A+ LPV+++
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K R +++ PT ELA QV +N + S+ +P +++ V GG Q
Sbjct: 63 LAAKPAD---KPLL---RALVMTPTRELAIQVCANIQKYSQF-LPLKTLAVYGGANMNPQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ +++GVD+L+ATPGR +I + L L
Sbjct: 116 RKGVEQGVDILVATPGRLFDIIGQFNLDL 144
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 207 (77.9 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 49/154 (31%), Positives = 89/154 (57%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G + +++++ R+ F P+ IQ P ++E + + ++GSGKT A+++P+I++
Sbjct: 93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ S ST R +IL+P+ ELA Q L + L K G +S+++ GG + Q
Sbjct: 153 LK-------SHSTKFGARGLILSPSRELALQTLKVVKELGK-GTDLKSVLLVGGDSLEEQ 204
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ D++IATPGRF+ L E L L ++++
Sbjct: 205 FGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIKY 238
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 201 (75.8 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 50/146 (34%), Positives = 76/146 (52%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ ++ESLK L P+ IQ P +E + + +G+GKT ++LLP +Q
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN-CRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG RV+IL PT ELASQ+ C + G+ ++TGG
Sbjct: 63 LID-----FPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIA--IITGGVPYAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q E L+ +D+L+ATPGR M + +G
Sbjct: 116 QEEALKGNIDILVATPGRLMEYLDKG 141
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 201 (75.8 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 50/146 (34%), Positives = 76/146 (52%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ ++ESLK L P+ IQ P +E + + +G+GKT ++LLP +Q
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN-CRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG RV+IL PT ELASQ+ C + G+ ++TGG
Sbjct: 63 LID-----FPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIA--IITGGVPYAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q E L+ +D+L+ATPGR M + +G
Sbjct: 116 QEEALKGNIDILVATPGRLMEYLDKG 141
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 207 (77.9 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 51/156 (32%), Positives = 84/156 (53%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K++ + G + M+ LK+ + +P+ IQA A P ++ G+ I ++GSGKTLA+LLP+
Sbjct: 304 KTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMF 363
Query: 328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ L Q EL+ P VILAPT ELA Q +K + + GG
Sbjct: 364 RHILDQPELE-----EGDGPIAVILAPTRELAMQTYKEANKFAK-PLGLKVACTYGGVGI 417
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ +L+ G ++++ TPGR + ++ ++ NLR
Sbjct: 418 SEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLR 453
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 201 (75.8 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 44/143 (30%), Positives = 77/143 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ ++ S+ + + +P+ IQ + P + GK + + +G+GKT A+LLP+ Q
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ G PRV+IL PT ELA Q+ + L++ ++ V+TGG +
Sbjct: 75 LLD-----YPRTKPGFPRVLILTPTRELAIQIGEDSEQLTEL-TKIKTGVITGGVNYGSH 128
Query: 390 LENLQEGVDVLIATPGRFMFLIK 412
+ L D+L+ATPGR + I+
Sbjct: 129 ADILTSTTDILVATPGRLLEYIE 151
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 205 (77.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 69/230 (30%), Positives = 110/230 (47%)
Query: 201 VDNDVPAESIDKNIS--DYNSR----SNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQ 254
VDN ES DK+I+ D +R S++ E ++ G SI + ++ PK+
Sbjct: 19 VDNVSEPESYDKDINGKDNTNRIKNVSDRDEDDVEEMKEGTSERTSISR-NNKNSENPKK 77
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
+ D + + +L S ++ L Q F P+ IQ P +EGKS + ++
Sbjct: 78 NNNNIIDMNCL----WSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSET 133
Query: 315 GSGKTLAYLLPVIQRLRQE-ELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSK 370
GSGKTLA++LP+++RL Q ++ + GS + +IL PT EL+ Q RSL+K
Sbjct: 134 GSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTK 193
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
V + GG K Q ++ D+ + TPGR + L+ IN
Sbjct: 194 Y-VTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFIN 242
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 205 (77.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 69/230 (30%), Positives = 110/230 (47%)
Query: 201 VDNDVPAESIDKNIS--DYNSR----SNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQ 254
VDN ES DK+I+ D +R S++ E ++ G SI + ++ PK+
Sbjct: 19 VDNVSEPESYDKDINGKDNTNRIKNVSDRDEDDVEEMKEGTSERTSISR-NNKNSENPKK 77
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
+ D + + +L S ++ L Q F P+ IQ P +EGKS + ++
Sbjct: 78 NNNNIIDMNCL----WSDLYISRPFLKVLYEQKFSNPTYIQRDVIPLALEGKSILANSET 133
Query: 315 GSGKTLAYLLPVIQRLRQE-ELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSK 370
GSGKTLA++LP+++RL Q ++ + GS + +IL PT EL+ Q RSL+K
Sbjct: 134 GSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLTK 193
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
V + GG K Q ++ D+ + TPGR + L+ IN
Sbjct: 194 Y-VTITYSLFCGGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFIN 242
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 205 (77.2 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 71/272 (26%), Positives = 126/272 (46%)
Query: 151 FSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESI 210
+++L R + R ++ VNA K+E + S +EN R + E + +
Sbjct: 196 YNKLYQSRHEIQFFGRGSVAGTDVNAQKKE-KNSFYQEMMENRRTVDE----KEQEMHRL 250
Query: 211 DKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--K 268
+K + K EK DR WR + + ++ S G R +
Sbjct: 251 EKEL--------KKEKKVAHDDRHWRMK-ELSEMSDRDWRIFREDFNISIKGGRVPRPLR 301
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+++E G D + +++K +L P+ IQ A P ++ + I ++GSGKT A+LLP++
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + P +I+APT ELA Q+ K + +++ V GG ++
Sbjct: 362 WITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKL-LGIKTVSVIGGASRED 420
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
Q L+ GV+V+IATPGR + +++ L L+N
Sbjct: 421 QGMKLRMGVEVVIATPGRLLDVLENRYL-LLN 451
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 201 (75.8 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 48/154 (31%), Positives = 82/154 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G +I+ L+++ F+ + IQA+A P ++ G+ Q+G+GKTLA+L
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +G +++ PR +I+APT ELA Q+ ++ L ++ + GG
Sbjct: 71 LLTTPAAEGRAET---QPRAIIMAPTRELAIQIFNDAEPLL-ASTGLKAALAYGGESYDK 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL LQ GVD+LI T GR + K+ + L +++
Sbjct: 127 QLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ 160
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 201 (75.8 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 48/154 (31%), Positives = 82/154 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G +I+ L+++ F+ + IQA+A P ++ G+ Q+G+GKTLA+L
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
Query: 330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +G +++ PR +I+APT ELA Q+ ++ L ++ + GG
Sbjct: 71 LLTTPAAEGRAET---QPRAIIMAPTRELAIQIFNDAEPLL-ASTGLKAALAYGGESYDK 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL LQ GVD+LI T GR + K+ + L +++
Sbjct: 127 QLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQ 160
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 208 (78.3 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 59/200 (29%), Positives = 101/200 (50%)
Query: 225 EKSGTKIDRG---WRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYM 279
EK KID WR + ++ K+ + S GD ++++E G M
Sbjct: 202 EKRAKKIDWDDVPWREK-PLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEM 260
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
++ LK+ N+ PS IQ A P +++ K I ++GSGKT A+++P+I + +L L+
Sbjct: 261 LKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAI--SKLPPLT 318
Query: 340 KSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
+S P V+LAPT ELA Q+ ++ + FR + V GG + Q + +G
Sbjct: 319 ESNMHLGPYAVVLAPTRELAQQIQVEGNKFAE-PLGFRCVSVVGGHAFEEQSFQMSQGAH 377
Query: 399 VLIATPGRFMFLIKEGILQL 418
+++ATPGR + ++ + L
Sbjct: 378 IVVATPGRLLDCLERRLFVL 397
Score = 39 (18.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 134 LRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAM 169
L NN+ + KK +SS S + + D+ +M
Sbjct: 70 LENNELADDEKKSQVSSVSSNNSGTESSATDEAFSM 105
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 209 (78.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 45/153 (29%), Positives = 80/153 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
S+ + G S I + + +P+ IQA A P + G+ I ++GSGKT+A+LLP+ +
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + T P +I+ PT ELA Q+ C+ K + R+ GG K
Sbjct: 479 HIKDQR----PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKL-LNIRACCAYGGAPIKD 533
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ +L+ G ++++ TPGR + ++ ++ NL
Sbjct: 534 QIADLKRGAEIVVCTPGRMIDVLSANAGRVTNL 566
Score = 43 (20.2 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 15/74 (20%), Positives = 29/74 (39%)
Query: 194 RELGEHIVDNDVPAESIDKNISDYNSRSNKHEK----SGTKI--DRGWRSGGSIHNLQYE 247
R+ ++ D ++ + D +SR ++H+ KI D W+ + +Y+
Sbjct: 20 RDYRKYDDSEDQKGARYNRYVDDVSSRRDRHDSFRSHESNKIRRDNSWKHDKYSYEKRYQ 79
Query: 248 PTDCPKQRHKYSAD 261
D R K D
Sbjct: 80 ERDREYARSKNIPD 93
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 205 (77.2 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 56/161 (34%), Positives = 93/161 (57%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K FK+L SD ++ L+ +F++ ++IQA + P ++G + A ++GSGKTLA+L+PVI
Sbjct: 41 KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100
Query: 328 QRLRQE---ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTG 382
++L +E E GL +I++PT ELA Q+ L+K G F + +V G
Sbjct: 101 EKLYREKWTEFDGLG--------ALIISPTRELAMQIYE---VLTKIGSHTSFSAGLVIG 149
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLR 422
G K +LE + +++LI TPGR + + + + L NL+
Sbjct: 150 GKDVKFELERISR-INILIGTPGRILQHLDQAVGLNTSNLQ 189
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 210 (79.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 49/156 (31%), Positives = 87/156 (55%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+S+ + G ++ + LK+ + +P+ IQA P ++ G+ I ++GSGKTLA+LLP+
Sbjct: 509 QSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMF 568
Query: 328 QRLRQEELQGLSKSTSGSPRV-VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ + + KS G + +I++PT ELA Q+ C+ SK + R+ V GG
Sbjct: 569 RHILAQP-----KSAPGEGMIALIMSPTRELALQIHVECKKFSKV-LGLRTACVYGGASI 622
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G D+++ TPGR + ++ ++ NLR
Sbjct: 623 SEQIAELKRGADIVVCTPGRMIDILCANNRRITNLR 658
Score = 43 (20.2 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 211 DKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNL-QYEPTDCPKQRHKYS 259
+ N ++ N+ +N + +G + DR + S N Q P +Q+ S
Sbjct: 56 NNNNNNNNNNNNNNNGNGYRDDRNYSSQNKYQNHHQQSPPQQQQQQQNSS 105
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 205 (77.2 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 47/154 (30%), Positives = 87/154 (56%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G +I+ + ++ + P+ IQ P ++EG+ + ++GSGKT +L+P+ ++
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ E T G+ R +IL+PT ELA Q + L + + +S++V GG +Q
Sbjct: 101 LQRRE------PTKGA-RALILSPTRELAVQTYKFIKELGRF-MELKSILVLGGDSMDSQ 152
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ DV++ATPGRF+ L E L+L ++ +
Sbjct: 153 FSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEY 186
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECG 235
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECG 235
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECG 235
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECG 235
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECG 235
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECG 235
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 203 (76.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 95 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 154
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 155 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 210 QIRDLERGVEICIATPGRLIDFLECG 235
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 205 (77.2 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 45/135 (33%), Positives = 80/135 (59%)
Query: 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
F +PS IQ+ A P ++ G+ I ++GSGKTL+Y+LP+++ ++ ++ SK G P
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQF---SKDNQG-PI 369
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
+IL+PT ELA Q+ + +K R GG + Q+ L++GV++++ TPGR
Sbjct: 370 GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRV 429
Query: 408 MFLIKEGILQLINLR 422
+ L+ +++NL+
Sbjct: 430 IDLLAANSGRVLNLK 444
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 205 (77.2 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 45/135 (33%), Positives = 80/135 (59%)
Query: 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
F +PS IQ+ A P ++ G+ I ++GSGKTL+Y+LP+++ ++ ++ SK G P
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQF---SKDNQG-PI 369
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
+IL+PT ELA Q+ + +K R GG + Q+ L++GV++++ TPGR
Sbjct: 370 GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRV 429
Query: 408 MFLIKEGILQLINLR 422
+ L+ +++NL+
Sbjct: 430 IDLLAANSGRVLNLK 444
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 204 (76.9 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 52/160 (32%), Positives = 85/160 (53%)
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
AD D +++ LG S + SL + F P+ +Q PP+++G I +GSGKT
Sbjct: 189 ADDDGADISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKT 248
Query: 320 LAYLLPVIQR-LRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSL--SKCGVP 374
LA+ LP+++ L +E + + P +IL+PT ELA Q+ + L + GV
Sbjct: 249 LAFGLPILEHYLERERRKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPGVN 308
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
R+ ++TGG + Q + L E D++I TPGR +++ G
Sbjct: 309 ARTALLTGGLSVQKQ-QRLLETADIVIGTPGRVWEVLRTG 347
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 205 (77.2 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 47/154 (30%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +L+P+ +R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K R+ ++ GG + + Q
Sbjct: 158 LKTHSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLRTALILGGDKMEDQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++IATPGR + + E L+L ++ +
Sbjct: 210 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 203 (76.5 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 49/146 (33%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++ + RQNF P+ IQA +P + G + Q+GSGKTL+YLLP I
Sbjct: 152 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIV 211
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV + +S + GG +
Sbjct: 212 HINHQPF--LERGDG--PICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGP 266
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 267 QIRDLERGVEICIATPGRLIDFLECG 292
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 203 (76.5 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 46/146 (31%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
SF G + ++ +++ + +P+ IQ P + G+ I ++GSGKT A++ P+ I
Sbjct: 249 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 308
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q+EL+ P VI+ PT EL Q+ S C+ K RS+ V GG
Sbjct: 309 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 362
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKE 413
Q + LQEG ++++ TPGR + +K+
Sbjct: 363 EQAKALQEGAEIVVCTPGRLIDHVKK 388
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 204 (76.9 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 47/154 (30%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +LLP+ +R
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K ++ ++ GG + + Q
Sbjct: 157 LKARSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 208
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++IATPGR + + E L+L ++ +
Sbjct: 209 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 204 (76.9 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 47/154 (30%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +LLP+ +R
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K ++ ++ GG + + Q
Sbjct: 157 LKARSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 208
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++IATPGR + + E L+L ++ +
Sbjct: 209 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 204 (76.9 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 45/155 (29%), Positives = 84/155 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G + +++ ++ ++ + +P+ IQ P ++EG+ + ++GSGKT A++LP+I+
Sbjct: 100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIE 159
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL+ + G R VIL+P+ ELA Q + S G +S+V+ GG +
Sbjct: 160 RLKSRQ--------PGGVRAVILSPSRELALQTYKQVKEFSH-GTNLQSIVLIGGDSLEE 210
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ D+++ TPGRF+ L E L+ +++
Sbjct: 211 DFSKMMTKPDIIVCTPGRFLHLKVEMQYDLMTVQY 245
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 208 (78.3 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 43/155 (27%), Positives = 85/155 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + ++ R +++ + +Q + P ++ G+ + Q+GSGKT A+LLP++
Sbjct: 275 TFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILS 334
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ E + P +I+APT EL +Q+ + R S G R +VV GG +
Sbjct: 335 YMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSY-GTCVRPVVVYGGIQPVH 393
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ ++++G ++L ATPGR + ++ + + L LR+
Sbjct: 394 AMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRY 428
Score = 37 (18.1 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 192 NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDR 233
NF L DN + D N +Y+S + + G + +R
Sbjct: 19 NFSTLETENTDNYSAYSNNDINNQNYDSERSFGNRGGYRSER 60
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 200 (75.5 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 52/166 (31%), Positives = 89/166 (53%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+ +F +LG D ++ +L + RP IQ + P ++G+ I ++G GKT A+ +P
Sbjct: 8 TESTFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVP 67
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-----------CGVP 374
++QR+ + G ++ +G+PR +++ PT EL QV + + K V
Sbjct: 68 LLQRITSGD--G-TRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVR 124
Query: 375 FRSMVVT--GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
R VV+ GG + Q+E L+ G DV++ TPGR + L ++G LQL
Sbjct: 125 RRLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQL 170
>ASPGD|ASPL0000000390 [details] [associations]
symbol:AN6374 species:162425 "Emericella nidulans"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
Length = 610
Score = 201 (75.8 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 50/156 (32%), Positives = 85/156 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+ L + ++L ++ F +P+ +QA A P +EGK + ++GSGKT AY+LP++
Sbjct: 28 EDFETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPIL 87
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFR 385
Q + Q++ + K+T+G +IL PT ELA QV + + CG RS+ +T
Sbjct: 88 QTILQKKAIDPSMKATTG----LILVPTRELAEQVQKVITTFAAFCGKDVRSVNLTQKVS 143
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q L + D++++TP R + + L L NL
Sbjct: 144 DAVQKAMLADYPDIVVSTPARVIANLGTSALSLENL 179
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 201 (75.8 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 53/157 (33%), Positives = 86/157 (54%)
Query: 269 SFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+F S+ ++ LK + NFL P IQA F V GK I ++G+GKT ++ +P+
Sbjct: 67 AFSNFPISEETVKLLKARGVNFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 124
Query: 327 IQRLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
I++L+ GL + G +P+V++LAPT ELA+QV + ++K GG
Sbjct: 125 IEKLQG----GLQERKRGRAPQVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTP 177
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+E ++ G+D+L+ TPGR ++ G L L L+
Sbjct: 178 YGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLK 214
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 198 (74.8 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 51/147 (34%), Positives = 80/147 (54%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+RKSF +LG S ++I++LK P+ IQ ++EG++CI ++GSGKT A+ LP
Sbjct: 5 TRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALP 64
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+I++ SK SG +IL PT ELA Q+ +L + + ++ GG
Sbjct: 65 IIEKW--------SKDPSGI-FALILTPTRELAIQIDEQFAALG-ANLNLKHALIVGGMD 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIK 412
Q +L + V++ATPGR LI+
Sbjct: 115 MIRQSIDLSKRPHVVVATPGRLADLIR 141
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 203 (76.5 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 46/146 (31%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
SF G + ++ +++ + +P+ IQ P + G+ I ++GSGKT A++ P+ I
Sbjct: 254 SFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q+EL+ P VI+ PT EL Q+ S C+ K RS+ V GG
Sbjct: 314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 367
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKE 413
Q + LQEG ++++ TPGR + +K+
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKK 393
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 203 (76.5 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 46/146 (31%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
SF G + ++ +++ + +P+ IQ P + G+ I ++GSGKT A++ P+ I
Sbjct: 256 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 315
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q+EL+ P VI+ PT EL Q+ S C+ K RS+ V GG
Sbjct: 316 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 369
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKE 413
Q + LQEG ++++ TPGR + +K+
Sbjct: 370 EQAKALQEGAEIVVCTPGRLIDHVKK 395
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 202 (76.2 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 49/154 (31%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P ++ G+ + ++GSGKT +LLP+ +R
Sbjct: 38 FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER 97
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ + S SG+ R +IL+PT ELA Q L + L K ++ +V GG + + Q
Sbjct: 98 LK-------APSPSGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALVLGGDKMEDQ 148
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++IATPGR + + E L+L ++ +
Sbjct: 149 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 182
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 200 (75.5 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 48/159 (30%), Positives = 88/159 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ++ D + +++R ++RP+ +Q A P ++ + + Q+GSGKT A+ P+I
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+ +++ ++ S + P VIL+PT ELA Q+ + S + GV + +V GG
Sbjct: 212 GIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV--KVVVAYGGTPI 269
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
QL L+ G D+L+ATPGR L++ + + +R+ A
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLA 308
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 197 (74.4 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 51/152 (33%), Positives = 79/152 (51%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++ L+ F + IQA + P +++G Q+G GKT+A+L
Sbjct: 11 FADLNLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHH 70
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q+E T PR +I+APT ELA Q+ + ++K R VV GG ++Q
Sbjct: 71 LLQKEAP-----THNQPRALIMAPTRELAIQIHRDATEMAK-STGLRLGVVYGGEGYESQ 124
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ GVD+LI T GR + +K+GI L N+
Sbjct: 125 RLELEAGVDILIGTCGRLIDYMKQGIYNLKNI 156
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 186 (70.5 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 178 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 237
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 238 SQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 296
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
VV GG Q+ +L+ G +L+ATPGR + +++ G + L
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 336
Score = 59 (25.8 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 188 PSLENFRELGEHIVDNDVPAESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGG 239
P L N RE + D D S DK+ S + SRS+ KS DRG S G
Sbjct: 41 PHLRN-REATKASYDKDSSRWSKDKDAYSSFGSRSDTRAKSSFFSDRGSGSRG 92
Score = 38 (18.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 194 RELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID 232
R + H+ + + S DK+ S ++ + + G++ D
Sbjct: 37 RYIPPHLRNREATKASYDKDSSRWSKDKDAYSSFGSRSD 75
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 186 (70.5 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 48/160 (30%), Positives = 86/160 (53%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 239 SQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 297
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
VV GG Q+ +L+ G +L+ATPGR + +++ G + L
Sbjct: 298 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 337
Score = 59 (25.8 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 188 PSLENFRELGEHIVDNDVPAESIDKNI-SDYNSRSNKHEKSGTKIDRG 234
P L N RE + D D S DK+ S + SRS+ KS DRG
Sbjct: 41 PHLRN-REAAKAFYDKDGSRWSKDKDAYSSFGSRSDTRAKSSFFSDRG 87
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 202 (76.2 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 42/149 (28%), Positives = 86/149 (57%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
++++G + ++++++ F +P+ IQ P +++GK + ++GSGKT A+++P++Q+
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ + G+ R ++++PT ELA Q + L + R + GG + + Q
Sbjct: 86 LKRRDTTGI--------RALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQIEEQ 136
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ E D+L+ATPGR + +I E L+L
Sbjct: 137 FSTIHENPDILLATPGRLLHVIVEMDLRL 165
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 201 (75.8 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 51/143 (35%), Positives = 81/143 (56%)
Query: 270 FKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVV--EGKS-CILADQSGSGKTLAYLLP 325
F LG S ++ L+++ +P+ IQ A P ++ GK+ + Q+GSGKTL+YLLP
Sbjct: 145 FASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP 204
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+I + + TSG+ +VI APT ELASQ+ C +L C ++ GG R
Sbjct: 205 IISTILNMDTH--VDRTSGAFALVI-APTRELASQIYHVCSTLVSCCHYLVPCLLIGGER 261
Query: 386 QKTQLENLQEGVDVLIATPGRFM 408
+K++ L++G + +I TPGR +
Sbjct: 262 KKSEKARLRKGCNFIIGTPGRVL 284
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 202 (76.2 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 46/154 (29%), Positives = 86/154 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +L+P+ +R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K ++ ++ GG + + Q
Sbjct: 158 LKTHSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L E D++IATPGR + + E L+L ++ +
Sbjct: 210 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 243
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 201 (75.8 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 69/262 (26%), Positives = 121/262 (46%)
Query: 162 VVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDN---DVPAESIDKNISDYN 218
++ ++ + K KQE K EN + E +D P + D+N S+
Sbjct: 113 IIRRKGGLVKMAHIDSKQEEETEKEKVEKENDSDDEELAMDGFGMGAPMNNGDENQSEEE 172
Query: 219 S----RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSA---DGDFFSRK--- 268
+ + E+ + + GG + E D + + + A +GD ++
Sbjct: 173 EEEEEKEEEEEEEEEQEEMTLEKGGKDDEID-EEDDSEEAKADFYAPETEGDEAKKQMYE 231
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F L S +++ L +++PS IQ+ P + GK I +GSGKT A+++P+I+
Sbjct: 232 NFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIE 291
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK--CGVPFRSMVVTGGFRQ 386
RL + + S RV++L PT ELA QV + +++ G+ F V GG
Sbjct: 292 RLLYKPAK------IASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAV--GGLNL 343
Query: 387 KTQLENLQEGVDVLIATPGRFM 408
+ Q + L+ D++IATPGRF+
Sbjct: 344 RQQEQMLKSRPDIVIATPGRFI 365
>UNIPROTKB|F1NV49 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 IPI:IPI00585086
EMBL:AADN02018635 EMBL:AADN02018636 Ensembl:ENSGALT00000026560
ArrayExpress:F1NV49 Uniprot:F1NV49
Length = 740
Score = 138 (53.6 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+++ +P+ +I+ P+ ELA Q L+N + K R +++ GG + QL L++G
Sbjct: 280 TQNLPNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRW 423
VD+++ TPGR L+ G L L +R+
Sbjct: 340 VDIVVGTPGRLDDLVSTGKLNLSQVRF 366
Score = 112 (44.5 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G +
Sbjct: 63 -IVYETLKDQMEGKKGKATI 81
Score = 39 (18.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 7 QVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVL 41
Q+ +K GL PP RN L CVL
Sbjct: 202 QIKFSKNGKDLGLAFEFPPHIRNQ---ALFAACVL 233
>UNIPROTKB|Q90WU3 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003712 "transcription
cofactor activity" evidence=ISS] [GO:0006302 "double-strand break
repair" evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985
SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 OrthoDB:EOG46HG95 EMBL:AY057383
IPI:IPI00585086 RefSeq:NP_989894.1 UniGene:Gga.14606 HSSP:P10081
ProteinModelPortal:Q90WU3 STRING:Q90WU3 PRIDE:Q90WU3 GeneID:395249
KEGG:gga:395249 HOGENOM:HOG000251633 NextBio:20815338
Uniprot:Q90WU3
Length = 740
Score = 138 (53.6 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+++ +P+ +I+ P+ ELA Q L+N + K R +++ GG + QL L++G
Sbjct: 280 TQNLPNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRW 423
VD+++ TPGR L+ G L L +R+
Sbjct: 340 VDIVVGTPGRLDDLVSTGKLNLSQVRF 366
Score = 112 (44.5 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G +
Sbjct: 63 -IVYETLKDQMEGKKGKATI 81
Score = 39 (18.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 7 QVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVL 41
Q+ +K GL PP RN L CVL
Sbjct: 202 QIKFSKNGKDLGLAFEFPPHIRNQ---ALFAACVL 233
>UNIPROTKB|Q92499 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0007275 "multicellular organismal development"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0033677
"DNA/RNA helicase activity" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003712
"transcription cofactor activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IDA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=IDA] [GO:0071920 "cleavage body" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=TAS] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006446 GO:GO:0006351
GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0010494 GO:GO:0000245 GO:GO:0008026
GO:GO:0043330 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HOGENOM:HOG000251633 EMBL:X70649 EMBL:BC012132
EMBL:BC053673 IPI:IPI00293655 RefSeq:NP_004930.1 UniGene:Hs.440599
ProteinModelPortal:Q92499 SMR:Q92499 IntAct:Q92499
MINT:MINT-5005493 STRING:Q92499 PhosphoSite:Q92499 DMDM:6919862
REPRODUCTION-2DPAGE:IPI00293655 PaxDb:Q92499 PeptideAtlas:Q92499
PRIDE:Q92499 Ensembl:ENST00000233084 Ensembl:ENST00000381341
GeneID:1653 KEGG:hsa:1653 UCSC:uc002rce.3 GeneCards:GC02P015731
HGNC:HGNC:2734 HPA:CAB012280 HPA:HPA034502 HPA:HPA034503 MIM:601257
neXtProt:NX_Q92499 PharmGKB:PA27199 InParanoid:Q92499
PhylomeDB:Q92499 ChiTaRS:DDX1 GenomeRNAi:1653 NextBio:6806
ArrayExpress:Q92499 Bgee:Q92499 CleanEx:HS_DDX1
Genevestigator:Q92499 GermOnline:ENSG00000079785 Uniprot:Q92499
Length = 740
Score = 137 (53.3 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+K +P+ +I+ P+ ELA Q L+N + K R +++ GG + QL L+ G
Sbjct: 280 TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRW 423
VD+++ TPGR L+ G L L +R+
Sbjct: 340 VDIVVGTPGRLDDLVSTGKLNLSQVRF 366
Score = 113 (44.8 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G +
Sbjct: 63 -IVYETLKDQQEGKKGKTTI 81
>UNIPROTKB|Q4R7L5 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9541
"Macaca fascicularis" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0032508
"DNA duplex unwinding" evidence=ISS] [GO:0033677 "DNA/RNA helicase
activity" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527
GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518 GO:GO:0010494
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GO:GO:0033677 HOVERGEN:HBG005462
OrthoDB:EOG46HG95 HSSP:P10081 EMBL:AB168800
ProteinModelPortal:Q4R7L5 PRIDE:Q4R7L5 Uniprot:Q4R7L5
Length = 740
Score = 137 (53.3 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+K +P+ +I+ P+ ELA Q L+N + K R +++ GG + QL L+ G
Sbjct: 280 TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRW 423
VD+++ TPGR L+ G L L +R+
Sbjct: 340 VDIVVGTPGRLDDLVSTGKLNLSQVRF 366
Score = 113 (44.8 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G +
Sbjct: 63 -IVYETLKDQQEGKKGKTTI 81
>UNIPROTKB|Q5NVJ8 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9601
"Pongo abelii" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0032508
"DNA duplex unwinding" evidence=ISS] [GO:0033677 "DNA/RNA helicase
activity" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527
GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518 GO:GO:0010494
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 HSSP:P10081 EMBL:CR926030
RefSeq:NP_001127099.1 UniGene:Pab.18409 ProteinModelPortal:Q5NVJ8
GeneID:100174133 KEGG:pon:100174133 InParanoid:Q5NVJ8
Uniprot:Q5NVJ8
Length = 740
Score = 137 (53.3 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+K +P+ +I+ P+ ELA Q L+N + K R +++ GG + QL L+ G
Sbjct: 280 TKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRW 423
VD+++ TPGR L+ G L L +R+
Sbjct: 340 VDIVVGTPGRLDDLVSTGKLNLSQVRF 366
Score = 113 (44.8 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G +
Sbjct: 63 -IVYETLKDQQEGKKGKTTI 81
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 198 (74.8 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 55/202 (27%), Positives = 96/202 (47%)
Query: 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSD 277
N+ N + S T +DR W++ +I P K + DF+ ++
Sbjct: 5 NNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFYLKRE-------- 56
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
++ + F +PS IQ A P + G+ + ++G+GKT A+++P +++++ +
Sbjct: 57 -LLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---- 111
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKTQLENLQEG 396
L+K + +I+ PT ELA Q R+L K CG+ MV TGG + + L E
Sbjct: 112 LNKI-----QALIMVPTRELALQTSQVVRTLGKHCGIS--CMVTTGGTNLRDDILRLNET 164
Query: 397 VDVLIATPGRFMFLIKEGILQL 418
V +L+ TPGR + L + L
Sbjct: 165 VHILVGTPGRVLDLASRKVADL 186
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 199 (75.1 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 64/226 (28%), Positives = 109/226 (48%)
Query: 195 ELGEHIVDNDVPAESIDKNISDYN-SRSNKHEK--SGTKIDRGWR-SGGSIHNLQYEPTD 250
E + +D ES K+I + S K EK S +K D+ + ++ PT+
Sbjct: 34 ESSDESSSSDSEVESKSKSIKKSSKSEEKKSEKKSSSSKEDKEEEVKEETKEDIVLSPTE 93
Query: 251 CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKR---QNFLRPSQIQAMAFPPVVEGKS 307
K +H +G F++ +DY + + Q F P+ IQ ++P ++ G
Sbjct: 94 WRK-KHNVLIEGKS-QPNPFQKF--TDYEFPRMFQHIFQGFTAPTVIQGQSWPIILGGND 149
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
+ +GSGKTLA+LLP + ++ + S +P V+++APT ELA Q+ C++
Sbjct: 150 LVGLAATGSGKTLAFLLPALLKIISLPKR---PSYGATPLVLVMAPTRELAQQIEEVCKT 206
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
+ G R + GG + Q L+ GVD++I TPGR L+++
Sbjct: 207 SIR-GTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRK 251
>WB|WBGene00001601 [details] [associations]
symbol:glh-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0008432 "JUN kinase binding" evidence=IPI]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0042127 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0007276
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:AF079508 EMBL:FO081191 PIR:T32759 PIR:T43326
RefSeq:NP_491207.3 ProteinModelPortal:O76743 SMR:O76743
IntAct:O76743 STRING:O76743 PaxDb:O76743 PRIDE:O76743
EnsemblMetazoa:T12F5.3.1 EnsemblMetazoa:T12F5.3.2 GeneID:171941
KEGG:cel:CELE_T12F5.3 UCSC:T12F5.3.1 CTD:171941 WormBase:T12F5.3
InParanoid:O76743 NextBio:873335 Uniprot:O76743
Length = 1156
Score = 203 (76.5 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 54/169 (31%), Positives = 90/169 (53%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D S FK L D + ++LKR RP+ IQ +F P++ G + +GSGKTLA+
Sbjct: 733 DMASFDGFKILP-QD-LHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAF 790
Query: 323 LLPVIQRLRQE-ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-----KCGVPFR 376
L+P + +L +E E SPR++I+APT EL +Q + R L+ KCG+ F
Sbjct: 791 LIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAF- 849
Query: 377 SMVVTGGFRQKTQLENLQE--GVDVLIATPGRFMFLIKEGILQLINLRW 423
GG+ + +++L+ +++L+AT GR + G + L +++
Sbjct: 850 -----GGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKY 893
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 199 (75.1 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 66/233 (28%), Positives = 112/233 (48%)
Query: 203 NDVPA-ESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSAD 261
++VPA E D I +S K + ++ SG + +L+ E + + +HK
Sbjct: 95 SEVPAQEDFDGGIQWTSSVEAKLQDEKVSGEKKLTSG-KLEHLRKEKVNFFRNKHKIHVQ 153
Query: 262 GDFFSRK--SFKELGCSDYMIESLKRQNFLR-----PSQIQAMAFPPVVEGKSCILADQS 314
G +F++L +Y I S QN L P+ IQ A P ++ G+ + + +
Sbjct: 154 GTDLPDPIATFQQLD-QEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPT 212
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
GSGKTLA+ +P++ +L+Q +G R ++++PT ELASQ+ +S+ G
Sbjct: 213 GSGKTLAFSIPILMQLKQPTNKGF--------RALVISPTRELASQIHRELIKISE-GTG 263
Query: 375 FR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE---GILQLINLRW 423
FR M+ K + D+L+ TP R ++L+K+ GI L N+ W
Sbjct: 264 FRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI-DLTNVEW 315
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 201 (75.8 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 53/157 (33%), Positives = 86/157 (54%)
Query: 269 SFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+F S+ ++ LK + NFL P IQA F V GK I ++G+GKT ++ +P+
Sbjct: 259 AFSNFPISEETVKLLKARGVNFLFP--IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPL 316
Query: 327 IQRLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
I++L+ GL + G +P+V++LAPT ELA+QV + ++K GG
Sbjct: 317 IEKLQG----GLQERKRGRAPQVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTP 369
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+E ++ G+D+L+ TPGR ++ G L L L+
Sbjct: 370 YGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLK 406
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 198 (74.8 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 60/243 (24%), Positives = 120/243 (49%)
Query: 188 PSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKS-G---TK-IDRGWRSGGSIH 242
P E ++ +V+ P + + +++SD + E + G T+ + W+ +
Sbjct: 12 PVEERLAQMKRKVVEE--PGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVR 69
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
+ + D +++ + +G+ K+F ++ ++ LK + + P+ IQ P
Sbjct: 70 KMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLP 129
Query: 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360
V+ G+ I +GSGKTL ++LP+I QEE+ + + P +++ P+ ELA Q
Sbjct: 130 VVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIM-MPIAAGEGPIALVICPSRELAKQ 188
Query: 361 ----VLSNCRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI 415
V SL + G P RS++ GG ++QL+ +++GV +++ATPGR ++ +
Sbjct: 189 TYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKK 248
Query: 416 LQL 418
+ L
Sbjct: 249 MSL 251
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 197 (74.4 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 45/137 (32%), Positives = 74/137 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S +++E ++ +P+ +Q P ++EG+ C+ ++GSGKT A++LP++Q+
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E+ G+ ++L PT ELA Q+ R L K + + ++ GG Q
Sbjct: 64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVAQ 113
Query: 390 LENLQEGVDVLIATPGR 406
L V+IATPGR
Sbjct: 114 ALELSRKPHVVIATPGR 130
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 197 (74.4 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 45/137 (32%), Positives = 74/137 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S +++E ++ +P+ +Q P ++EG+ C+ ++GSGKT A++LP++Q+
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E+ G+ ++L PT ELA Q+ R L K + + ++ GG Q
Sbjct: 64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVAQ 113
Query: 390 LENLQEGVDVLIATPGR 406
L V+IATPGR
Sbjct: 114 ALELSRKPHVVIATPGR 130
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 197 (74.4 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 45/137 (32%), Positives = 74/137 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S +++E ++ +P+ +Q P ++EG+ C+ ++GSGKT A++LP++Q+
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E+ G+ ++L PT ELA Q+ R L K + + ++ GG Q
Sbjct: 64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVAQ 113
Query: 390 LENLQEGVDVLIATPGR 406
L V+IATPGR
Sbjct: 114 ALELSRKPHVVIATPGR 130
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 201 (75.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 44/146 (30%), Positives = 77/146 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G + ++ +++ + +P+ IQ P + G+ I ++GSGKT A++ P++
Sbjct: 258 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILV 317
Query: 329 RLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q+EL+ P VI+ PT EL Q+ + C+ K RS+ V GG
Sbjct: 318 HIMDQKELE-----PGEGPIAVIVCPTRELCQQIHAECKRFGKA-YGLRSVAVYGGGSMW 371
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKE 413
Q + LQEG ++++ TPGR + +K+
Sbjct: 372 EQAKALQEGAEIVVCTPGRLIDHVKK 397
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 193 (73.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 50/148 (33%), Positives = 77/148 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ++E++++ + +P+ IQAMA P + G+ + ++GSGKT AYL P I
Sbjct: 266 SFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIV 325
Query: 329 RLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q +L K+ G P VI+ PT ELA QV + K + GG +
Sbjct: 326 HIMDQPDL----KAGEG-PVAVIVVPTRELAIQVFQEAKKFCKV-YNINPICAYGGGSKW 379
Query: 388 TQLENLQ-EGVDVLIATPGRFMFLIKEG 414
Q LQ EG ++++ TPGR + L+K G
Sbjct: 380 EQSNELQNEGAEMVVCTPGRIIDLVKMG 407
Score = 52 (23.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 161 AVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSR 220
A ++K+++ KK +++ + K T + LG +D + ES+ K + +Y
Sbjct: 127 AGIEKQASSDKKVSEQKEKDRKEGKDTEDPSK-KGLGRADIDEEDMQESLFKFMEEYKE- 184
Query: 221 SNKHEKSGTKID 232
KHE +++
Sbjct: 185 --KHENDDEQLE 194
Score = 37 (18.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS 240
+ ++ E N+ Y S S K + D + GGS
Sbjct: 61 EQEMKKEQEYANLMAYGSTSEKQSRRKRIYDDEYLEGGS 99
WARNING: HSPs involving 521 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 439 414 0.00081 118 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 771
No. of states in DFA: 615 (65 KB)
Total size of DFA: 248 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.10u 0.11s 36.21t Elapsed: 00:00:03
Total cpu time: 36.13u 0.11s 36.24t Elapsed: 00:00:03
Start: Sat May 11 08:19:44 2013 End: Sat May 11 08:19:47 2013
WARNINGS ISSUED: 2