BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013623
(439 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297736840|emb|CBI26041.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 202/378 (53%), Positives = 244/378 (64%), Gaps = 56/378 (14%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNK-DPSQPTT 129
YSR ++T GA +LID++TGEK IVWGG DDD PPIP K +L +WN D + PT
Sbjct: 48 YSRRQMDTPGAYQLIDDETGEKFIVWGGIDDD----PPIPSKDVL---SWNPVDNNTPTP 100
Query: 130 S---------APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE 180
S A ++ + KGV SF RLKAQRVKA+
Sbjct: 101 SKDGHAGIEPAAAVKKDVFPKAQTKGVTGSFGRLKAQRVKAL------------------ 142
Query: 181 GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID-------- 232
TT + + REL E+ + +D + S+ K +S KI
Sbjct: 143 -----TTKTSKAKRELNEYKIHSDKTVKRDIGKFSELQITPEKPHRSDNKIAGADVLVPR 197
Query: 233 ------RGWRSGGSIHNLQYEPTDCPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLK 284
+GW G ++ N ++E T+ PK+R K + AD DFFS KSF++LGCSDYMIESL+
Sbjct: 198 VSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLR 257
Query: 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344
Q F+RPS IQAMAF V+EGKSCI+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G
Sbjct: 258 GQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAG 317
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
P+VVIL PTAELASQVLSNCRS+SK G PFRSM TGGFRQ+TQLENLQ+ +DVLIATP
Sbjct: 318 CPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATP 377
Query: 405 GRFMFLIKEGILQLINLR 422
GRFMFLIKEG LQL NLR
Sbjct: 378 GRFMFLIKEGFLQLTNLR 395
>gi|225432238|ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Vitis
vinifera]
Length = 707
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 209/414 (50%), Positives = 257/414 (62%), Gaps = 69/414 (16%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNK-DPSQPTT 129
YSR ++T GA +LID++TGEK IVWGG DDD PPIP K +L +WN D + PT
Sbjct: 48 YSRRQMDTPGAYQLIDDETGEKFIVWGGIDDD----PPIPSKDVL---SWNPVDNNTPTP 100
Query: 130 S---------APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTV----NA 176
S A ++ + KGV SF RLKAQRVKA+ K S ++ N
Sbjct: 101 SKDGHAGIEPAAAVKKDVFPKAQTKGVTGSFGRLKAQRVKALTTKTSKAKRELNECDDNE 160
Query: 177 LKQEG---RLSKTTPSLENF--------------------RELGE------HIVDNDVPA 207
L+ EG R S + S F RE+ + I D
Sbjct: 161 LEVEGAPSRRSIGSHSELEFMDEKKKLLIHGGNASRAFRRREIKDVIQTTGEIKDKIHSD 220
Query: 208 ESIDKNISDYNSRS---NKHEKSGTKID--------------RGWRSGGSIHNLQYEPTD 250
+++ ++I ++ K +S KI +GW G ++ N ++E T+
Sbjct: 221 KTVKRDIGKFSELQITPEKPHRSDNKIAGADVLVPRVSTANLQGWGYGETMRNFEFETTN 280
Query: 251 CPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308
PK+R K + AD DFFS KSF++LGCSDYMIESL+ Q F+RPS IQAMAF V+EGKSC
Sbjct: 281 IPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLRGQLFVRPSHIQAMAFATVMEGKSC 340
Query: 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368
I+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G P+VVIL PTAELASQVLSNCRS+
Sbjct: 341 IIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAGCPQVVILVPTAELASQVLSNCRSI 400
Query: 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
SK G PFRSM TGGFRQ+TQLENLQ+ +DVLIATPGRFMFLIKEG LQL NLR
Sbjct: 401 SKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLR 454
>gi|449459868|ref|XP_004147668.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 648
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 183/379 (48%), Positives = 233/379 (61%), Gaps = 62/379 (16%)
Query: 69 GGYSRTPLETAGACELIDND----TGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDP 124
GY+R +++AG +L D D T + + + G + D D
Sbjct: 54 AGYARKSVDSAGVYQLTDEDDFTVTSSEELRYDGDETVDDED------------------ 95
Query: 125 SQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRL- 183
T +R K+ I SF RLK Q+VKA+V K G +T L+ + R
Sbjct: 96 ----TKTSGMR--------KRISIGSFGRLKTQKVKAIVTK----GSRTNEELRNDVRKP 139
Query: 184 --SKTTPSLENF-----RELGE--------HIVDNDVPAESIDKNISDYN----SRSNKH 224
+P + ++ + +GE ++ N P+E D+ SRS
Sbjct: 140 TPEDGSPHISDYPRSKVKTMGEKKRINALRNVEKNSRPSELQDRERHQTTAPNLSRSEPL 199
Query: 225 EKSGT-KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESL 283
SG+ RGW S G + +YEPT+ +Q K S++ F+SRKSFKELGCS+YMIESL
Sbjct: 200 VSSGSGSYFRGWGSRGP-YGSEYEPTEHKQQ--KISSEKGFYSRKSFKELGCSEYMIESL 256
Query: 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343
+RQNF+RPSQIQA AF V++GKSCI++DQSGSGKTLAYL+P+IQRLRQEEL+G KS+S
Sbjct: 257 RRQNFVRPSQIQAKAFSSVIDGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGHQKSSS 316
Query: 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIAT 403
SP++VI+ PTAELASQVLSNCRS+SK GVPFRSMVVTGGFRQKTQL+NLQEGVDVLIAT
Sbjct: 317 KSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIAT 376
Query: 404 PGRFMFLIKEGILQLINLR 422
PGR M LI EG L L NLR
Sbjct: 377 PGRLMLLINEGFLLLSNLR 395
>gi|219888667|gb|ACL54708.1| unknown [Zea mays]
Length = 424
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 240/397 (60%), Gaps = 53/397 (13%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQG--------------------IGNFGRFKAQKIKSLVTRSAHRKR 128
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 129 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 188
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 189 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 245
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 246 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 305
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 306 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 365
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLR
Sbjct: 366 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLR 402
>gi|413957214|gb|AFW89863.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 649
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 240/397 (60%), Gaps = 53/397 (13%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQG--------------------IGNFGRFKAQKIKSLVTRSAHRKR 128
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 129 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 188
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 189 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 245
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 246 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 305
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 306 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 365
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLR
Sbjct: 366 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLR 402
>gi|226502877|ref|NP_001146459.1| uncharacterized protein LOC100280046 [Zea mays]
gi|219887353|gb|ACL54051.1| unknown [Zea mays]
gi|413957213|gb|AFW89862.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 655
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 240/397 (60%), Gaps = 47/397 (11%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQGVGGG--------------TGIGNFGRFKAQKIKSLVTRSAHRKR 134
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 135 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 194
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 195 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 251
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 252 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 311
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 312 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 371
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLR
Sbjct: 372 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLR 408
>gi|147854298|emb|CAN83429.1| hypothetical protein VITISV_034872 [Vitis vinifera]
Length = 563
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 143/219 (65%), Positives = 164/219 (74%), Gaps = 29/219 (13%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLKRQNFLR 290
+GW G ++ N ++E T+ PK+R K + AD DFFS KSF++LGCSDYMIESL+ Q F+R
Sbjct: 92 QGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLRGQLFVR 151
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
PS IQAMAF V+EGKSCI+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G PRVVI
Sbjct: 152 PSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAGCPRVVI 211
Query: 351 LAPTAELASQ---------------------------VLSNCRSLSKCGVPFRSMVVTGG 383
L PTAELASQ VLSNCRS+SK G PFRSM TGG
Sbjct: 212 LVPTAELASQMRFCYVCGSFNANNVVQEHKDKTIHTKVLSNCRSISKFGAPFRSMAATGG 271
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
FRQ+TQLENLQ+ +DVLIATPGRFMFLIKEG LQL NLR
Sbjct: 272 FRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLR 310
>gi|326514124|dbj|BAJ92212.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/384 (43%), Positives = 226/384 (58%), Gaps = 47/384 (12%)
Query: 64 GDGGGGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKD 123
G+ GG GY R ++T GA L+D TG+ VIVWGG DD D P +P +L ++
Sbjct: 46 GEDGGRGYERVAMDTPGAYRLVDRSTGKSVIVWGGVDDGED--PSVPSPAVLSRVTADRS 103
Query: 124 PSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRL 183
S+ + S GV SF RLKAQ+V+A + +++ LK+EG
Sbjct: 104 ASKGAANGG----------SSAGV-GSFGRLKAQKVQA-------LARRSAAQLKREGTS 145
Query: 184 SKTT-------PSLENFRE---LGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDR 233
S+T+ PS ++ E G D PA N ++R++ +S + R
Sbjct: 146 SRTSIAQRNEPPSADSDEEGNNSGRRKFVPD-PARRAKPNGDSRDARTSA-VRSLNSVLR 203
Query: 234 GWRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKELGCSDY 278
++ EP PK ++ K D FFSR+SFKE+GC D
Sbjct: 204 QYKGDDDSDFSDEEPASGPKVWGKVADVTSYRREDRKQKVPLDSGFFSRRSFKEIGCGDE 263
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++ +L F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P++Q LR+EE G+
Sbjct: 264 ILGALTTFGFPQPSHIQAMAYAPVLEGRSCIIADQSGSGKTLAYLCPIVQNLRKEEAMGI 323
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K + +PRVVIL PTAEL+SQVL NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +D
Sbjct: 324 HKPSPRNPRVVILTPTAELSSQVLQNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELD 383
Query: 399 VLIATPGRFMFLIKEGILQLINLR 422
VLIATPGRF++L++EG +QL NLR
Sbjct: 384 VLIATPGRFLYLLQEGFVQLNNLR 407
>gi|115450203|ref|NP_001048702.1| Os03g0108600 [Oryza sativa Japonica Group]
gi|113547173|dbj|BAF10616.1| Os03g0108600, partial [Oryza sativa Japonica Group]
Length = 653
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 165/363 (45%), Positives = 223/363 (61%), Gaps = 39/363 (10%)
Query: 74 TPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPV 133
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 69 VPMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG-- 119
Query: 134 LRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE-- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 120 ----------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESD 167
Query: 192 ------------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGG 239
N R+ D A S++ + Y ++ + G++ G + G
Sbjct: 168 EDGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWG 226
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
+I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 227 NISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAY 283
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELAS
Sbjct: 284 RPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELAS 343
Query: 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI 419
QVL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL
Sbjct: 344 QVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLN 403
Query: 420 NLR 422
NLR
Sbjct: 404 NLR 406
>gi|143456346|sp|Q0DVX2.2|RH50_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 50
gi|108705771|gb|ABF93566.1| DEAD/DEAH box helicase, putative, expressed [Oryza sativa Japonica
Group]
gi|215686822|dbj|BAG89672.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624050|gb|EEE58182.1| hypothetical protein OsJ_09113 [Oryza sativa Japonica Group]
Length = 641
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 165/363 (45%), Positives = 223/363 (61%), Gaps = 39/363 (10%)
Query: 74 TPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPV 133
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 57 VPMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG-- 107
Query: 134 LRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE-- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 108 ----------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESD 155
Query: 192 ------------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGG 239
N R+ D A S++ + Y ++ + G++ G + G
Sbjct: 156 EDGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWG 214
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
+I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 215 NISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAY 271
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELAS
Sbjct: 272 RPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELAS 331
Query: 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI 419
QVL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL
Sbjct: 332 QVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLN 391
Query: 420 NLR 422
NLR
Sbjct: 392 NLR 394
>gi|218191936|gb|EEC74363.1| hypothetical protein OsI_09674 [Oryza sativa Indica Group]
Length = 620
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/349 (46%), Positives = 221/349 (63%), Gaps = 32/349 (9%)
Query: 74 TPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPV 133
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 57 VPMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG-- 107
Query: 134 LRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENF 193
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E+
Sbjct: 108 ----------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDES- 154
Query: 194 RELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPK 253
E G + + A + K + ++ G++ G + G+I ++ + +
Sbjct: 155 DEDGAYFERDR--ARNTGKTVDLETTKPR-----GSEATSGSKRWGNISDVTFGRQN--- 204
Query: 254 QRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQ 313
QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+ PV+EGKSCI+ DQ
Sbjct: 205 QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQ 264
Query: 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV 373
SGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELASQVL+NCRS+SK GV
Sbjct: 265 SGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGV 324
Query: 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
PFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL NLR
Sbjct: 325 PFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLR 373
>gi|224107012|ref|XP_002314343.1| predicted protein [Populus trichocarpa]
gi|222863383|gb|EEF00514.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 129/162 (79%), Positives = 151/162 (93%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
+ DFFSRKSF++LGC+D+MIESLK Q F+RPS IQAMAF PV++GKSCI+ADQSGSGKT+
Sbjct: 10 ENDFFSRKSFRDLGCTDFMIESLKGQVFVRPSHIQAMAFAPVIDGKSCIIADQSGSGKTM 69
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
AYL+P+IQRLRQEELQGL +S+S SPRV+IL PTAELASQVL+NCRS+SK GVPFRSMVV
Sbjct: 70 AYLIPLIQRLRQEELQGLGQSSSQSPRVLILVPTAELASQVLNNCRSMSKHGVPFRSMVV 129
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
TGGFRQ+TQLENL++GVDVLIATPGRFMFLIKEG L+L NL+
Sbjct: 130 TGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLKLQNLK 171
>gi|255556636|ref|XP_002519352.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223541667|gb|EEF43216.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 594
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 151/299 (50%), Positives = 200/299 (66%), Gaps = 24/299 (8%)
Query: 142 PSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNAL----KQEGRLSKTTPSLENFRELG 197
PS G +F +LKAQ++K ++ + +M +K + + + + S N
Sbjct: 49 PSTMG---AFGKLKAQKLKVLMRRAESMKQKVTKNVHVPPRADPHFHDSVISDTNSNSTA 105
Query: 198 EHIVDNDVPAESI----DKNISDYNS--RSNKHEKSGTKIDRGWRSGGSIHNLQYE---- 247
+ AE+I K+I ++S + +KH+ S R G + Y
Sbjct: 106 SVTQGS---AETIVTRAGKDIKSFSSSVKHDKHQMSDHVFRRSGAEGSAPATSSYFSGWA 162
Query: 248 ----PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
T ++HK+SA+ DFFSRKSF++LGCS++MIESLK Q FLRPS IQAM+F PV+
Sbjct: 163 NVGLTTKSIHRQHKFSAENDFFSRKSFRDLGCSEFMIESLKGQGFLRPSPIQAMSFTPVI 222
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
EGKSC++ADQSGSGKTLAYL+P+IQRLR EELQGL +S SP+++I+ PTAELASQVL
Sbjct: 223 EGKSCVIADQSGSGKTLAYLVPIIQRLRLEELQGLGESFPQSPQILIMVPTAELASQVLY 282
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
NCRS+SK GVPFRSM VTGGF Q+TQLENL++GV+VLIATPGRFMFL+KEG L+L NL+
Sbjct: 283 NCRSMSKFGVPFRSMAVTGGFSQRTQLENLEQGVNVLIATPGRFMFLVKEGFLKLSNLK 341
>gi|297829242|ref|XP_002882503.1| hypothetical protein ARALYDRAFT_478019 [Arabidopsis lyrata subsp.
lyrata]
gi|297328343|gb|EFH58762.1| hypothetical protein ARALYDRAFT_478019 [Arabidopsis lyrata subsp.
lyrata]
Length = 782
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 134/209 (64%), Positives = 163/209 (77%), Gaps = 4/209 (1%)
Query: 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQY--EPTDCPKQRHKYSA--DGDFFSRKSFKEL 273
N R H D R G ++ Y + D + R+K +A + FFSRK+F E+
Sbjct: 321 NERGGSHSSYSKGSDTNSRGWGDRRSVVYARDMDDWRENRNKTNATRETGFFSRKTFAEI 380
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
GCS+ M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+P IQRLR+E
Sbjct: 381 GCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPAIQRLREE 440
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
ELQG SKS+SG PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL
Sbjct: 441 ELQGQSKSSSGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENL 500
Query: 394 QEGVDVLIATPGRFMFLIKEGILQLINLR 422
++GVDVLIATPGRFM+L+ EGIL L NLR
Sbjct: 501 EQGVDVLIATPGRFMYLMNEGILGLSNLR 529
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 21/113 (18%)
Query: 56 VVLVRASGGDGG---GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPK 112
+V + +GG GG G+ R PLET+ + D+ T E ++ D +++ PP P
Sbjct: 24 IVRLFRNGGSGGVVARAGFVRRPLETSSS---YDDSTDEGFVIISSVDKENEFSPP-PTP 79
Query: 113 HLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDK 165
LL S PS+ T RN S GV +SF RLKAQ+VKA+V K
Sbjct: 80 DLLSSI-----PSESTR-----RNGSRS----GGVTASFGRLKAQKVKALVGK 118
>gi|27311829|gb|AAO00880.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 781
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 132/206 (64%), Positives = 162/206 (78%), Gaps = 4/206 (1%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLRW 423
DVLIATPGRF +L+ EGIL L NLR+
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRF 529
>gi|15231353|ref|NP_187354.1| DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana]
gi|108861898|sp|Q8GUG7.2|RH50_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 50
gi|6729005|gb|AAF27002.1|AC016827_13 putative DEAD/DEAH box helicase [Arabidopsis thaliana]
gi|15081735|gb|AAK82522.1| AT3g06980/F17A9_13 [Arabidopsis thaliana]
gi|16519315|emb|CAC82719.1| DEAD-box RNA Helicase [Arabidopsis thaliana]
gi|21360513|gb|AAM47372.1| AT3g06980/F17A9_13 [Arabidopsis thaliana]
gi|332640962|gb|AEE74483.1| DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana]
Length = 781
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/205 (64%), Positives = 161/205 (78%), Gaps = 4/205 (1%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLR 422
DVLIATPGRF +L+ EGIL L NLR
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLR 528
>gi|242042555|ref|XP_002468672.1| hypothetical protein SORBIDRAFT_01g050040 [Sorghum bicolor]
gi|241922526|gb|EER95670.1| hypothetical protein SORBIDRAFT_01g050040 [Sorghum bicolor]
Length = 656
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 162/386 (41%), Positives = 228/386 (59%), Gaps = 58/386 (15%)
Query: 70 GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTT 129
G+ + P++T GA L+D TG VIVWGGTDD + P P L + ++ SQ
Sbjct: 49 GFDKVPMDTPGAYRLVDRATGRSVIVWGGTDDGDEAAIP-SPAVLSRTRTTDRRSSQGVG 107
Query: 130 SAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQ-----EGRLS 184
+ +F RLKAQ++K++V RSA K+ ++ E
Sbjct: 108 GGTGI--------------GNFGRLKAQKIKSLV-TRSAHRKRESSSRSSTNRSGESSFD 152
Query: 185 KTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKI------------- 231
+ E++ E + + D++ A K SDY + + S T +
Sbjct: 153 GSGDEEESYFERRKPVSDSEHRA----KLSSDYRNGRTRGAHSLTSVLGQYRGADDTGFP 208
Query: 232 -------DRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFFSRKSFKELGCS 276
+GW G++ ++ Y EP + P++ K D FFSR++FKE+GCS
Sbjct: 209 ASEATSGSKGW---GNVADVTYGRQNQKQREPLNFPQR--KGPLDSGFFSRRTFKEIGCS 263
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
D ++ L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P+IQ LR EE+Q
Sbjct: 264 DEILVVLRNFDFPRPSHIQAMAYGPILEGRSCVIADQSGSGKTLAYLCPIIQNLRSEEVQ 323
Query: 337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG 396
GL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFRQKTQLE+L +
Sbjct: 324 GLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFRQKTQLESLNQE 383
Query: 397 VDVLIATPGRFMFLIKEGILQLINLR 422
+DV+IATPGRF++L++EG +QL NLR
Sbjct: 384 LDVIIATPGRFLYLLQEGFVQLANLR 409
>gi|24476045|gb|AAN62787.1| Putative DEAD/DEAH box RNA helicase protein [Oryza sativa Japonica
Group]
Length = 758
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 165/397 (41%), Positives = 223/397 (56%), Gaps = 73/397 (18%)
Query: 74 TPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPV 133
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 119 VPMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG-- 169
Query: 134 LRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE-- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 170 ----------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESD 217
Query: 192 ------------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGG 239
N R+ D A S++ + Y ++ + G++ G + G
Sbjct: 218 EDGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWG 276
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
+I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 277 NISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAY 333
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA- 358
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELA
Sbjct: 334 RPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELAS 393
Query: 359 ---------------------------------SQVLSNCRSLSKCGVPFRSMVVTGGFR 385
SQVL+NCRS+SK GVPFRSMV TGGFR
Sbjct: 394 QVFYTLNVILPMFSDCFYAKLGKAGVLIGTFLISQVLNNCRSISKSGVPFRSMVATGGFR 453
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QKTQLE+L + +DVLIATPGRF++L++EG +QL NLR
Sbjct: 454 QKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLR 490
>gi|356516407|ref|XP_003526886.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
max]
Length = 530
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/278 (52%), Positives = 177/278 (63%), Gaps = 43/278 (15%)
Query: 148 ISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPA 207
SSF RLKAQ+VK ++ R + S P H+ D+D
Sbjct: 44 FSSFGRLKAQKVKTLLVHRRGKDQ------------SHRRPV---------HLEDDD--- 79
Query: 208 ESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR 267
D + RS + G + D P P + K +D FFS
Sbjct: 80 ---DYVATPRPRRSQSRTRGGERWD-------------MIPNYTPPAQSKSVSDTKFFSL 123
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFKE+GCS+YMIESL++ F RPS +QAMAF PV+ GK+C++ADQSGSGKT AYL P+I
Sbjct: 124 KSFKEIGCSEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVIADQSGSGKTFAYLAPII 183
Query: 328 QRLRQEELQGL---SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
QRLRQ+EL+G+ S S + SPRV++LAPTAELASQVL NCRSLSK GVPF+SMVVTGGF
Sbjct: 184 QRLRQQELEGIISKSSSQAPSPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGF 243
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
RQKTQLENLQ+GVDVLIATPGRF+FLI +G L L NLR
Sbjct: 244 RQKTQLENLQQGVDVLIATPGRFLFLINQGFLHLTNLR 281
>gi|356507351|ref|XP_003522431.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
max]
Length = 528
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/167 (74%), Positives = 144/167 (86%), Gaps = 1/167 (0%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K + D FFS KSFKE+GCS+YMIESL++ RPS +QAMAF PV+ GK+C++ADQSGS
Sbjct: 113 KSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGS 172
Query: 317 GKTLAYLLPVIQRLRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
GKTLAYL P+IQ LR EEL+G S KS+S +PRV++LAPTAELASQVL NCRSLSK GVPF
Sbjct: 173 GKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPF 232
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+SMVVTGGFRQKTQLENLQ+GVDVLIATPGRF+FLI EG LQL NLR
Sbjct: 233 KSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLR 279
>gi|47077008|dbj|BAD18438.1| unnamed protein product [Homo sapiens]
Length = 528
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/167 (74%), Positives = 144/167 (86%), Gaps = 1/167 (0%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K + D FFS KSFKE+GCS+YMIESL++ RPS +QAMAF PV+ GK+C++ADQSGS
Sbjct: 113 KSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGS 172
Query: 317 GKTLAYLLPVIQRLRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
GKTLAYL P+IQ LR EEL+G S KS+S +PRV++LAPTAELASQVL NCRSLSK GVPF
Sbjct: 173 GKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPF 232
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+SMVVTGGFRQKTQLENLQ+GVDVLIATPGRF+FLI EG LQL NLR
Sbjct: 233 KSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLR 279
>gi|357156184|ref|XP_003577369.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 2
[Brachypodium distachyon]
Length = 662
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 167/386 (43%), Positives = 221/386 (57%), Gaps = 50/386 (12%)
Query: 68 GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHD-HDPPIPPKHLLDSSNW--NKDP 124
G GY R ++T GA L+D TG+ VIVWGG DDD +P +P +L S N D
Sbjct: 49 GEGYERVAMDTPGAYRLVDRRTGKSVIVWGGIDDDDGGEEPSVPSPAVLSRSTHSGNTDS 108
Query: 125 SQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE---- 180
S + A S + SF RLKAQ+V+ + ++++ LK+E
Sbjct: 109 SSLSKGAA---------NSGSSGVGSFGRLKAQKVQD-------LARRSLANLKREPTSS 152
Query: 181 -------GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHE--KSGTKI 231
S +E + G ++ PA N NSR K +S +
Sbjct: 153 RTSTTRRNESSFVDKKVEGESDFGRRKYGSEYPARRAKPN---NNSRDEKTREVRSLDSV 209
Query: 232 DRGWRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKELGCS 276
R +R G E T PK ++ K D FFSR+SFKE+GC
Sbjct: 210 LRQYRGDGDSDFRSEEATSGPKVWGKVADATSYRREDRKQKVPLDSGFFSRRSFKEIGCG 269
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
D ++ +L+ F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P+IQ LR+EE
Sbjct: 270 DEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQNLRKEEAM 329
Query: 337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG 396
G+ KS+ +PRV+IL PTAEL+SQVL NCRS+SK G PFRSMV TGGFRQKTQLE+L++
Sbjct: 330 GVHKSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQLESLEQE 389
Query: 397 VDVLIATPGRFMFLIKEGILQLINLR 422
+DVLIATPGRF++L++EG +QL NLR
Sbjct: 390 LDVLIATPGRFLYLLQEGFVQLNNLR 415
>gi|357156181|ref|XP_003577368.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 1
[Brachypodium distachyon]
Length = 651
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 163/383 (42%), Positives = 218/383 (56%), Gaps = 55/383 (14%)
Query: 68 GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQP 127
G GY R ++T GA L+D TG+ VIVWGG DDD + P P
Sbjct: 49 GEGYERVAMDTPGAYRLVDRRTGKSVIVWGGIDDDDGGEEPSVP---------------- 92
Query: 128 TTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE------- 180
+ A + R+ + S + SF RLKAQ+V+ + ++++ LK+E
Sbjct: 93 -SPAVLSRSTHSAANSGSSGVGSFGRLKAQKVQD-------LARRSLANLKREPTSSRTS 144
Query: 181 ----GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHE--KSGTKIDRG 234
S +E + G ++ PA N NSR K +S + R
Sbjct: 145 TTRRNESSFVDKKVEGESDFGRRKYGSEYPARRAKPN---NNSRDEKTREVRSLDSVLRQ 201
Query: 235 WRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKELGCSDYM 279
+R G E T PK ++ K D FFSR+SFKE+GC D +
Sbjct: 202 YRGDGDSDFRSEEATSGPKVWGKVADATSYRREDRKQKVPLDSGFFSRRSFKEIGCGDEI 261
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+ +L+ F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P+IQ LR+EE G+
Sbjct: 262 LGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQNLRKEEAMGVH 321
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
KS+ +PRV+IL PTAEL+SQVL NCRS+SK G PFRSMV TGGFRQKTQLE+L++ +DV
Sbjct: 322 KSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQLESLEQELDV 381
Query: 400 LIATPGRFMFLIKEGILQLINLR 422
LIATPGRF++L++EG +QL NLR
Sbjct: 382 LIATPGRFLYLLQEGFVQLNNLR 404
>gi|357467561|ref|XP_003604065.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355493113|gb|AES74316.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 568
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 115/163 (70%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
S D +FFS KSFK +GC+D+MIESL + RPS IQAM+FPPV+ GKSCI+ADQSGSGK
Sbjct: 120 SEDTNFFSLKSFKGIGCADFMIESLHNLSLTRPSNIQAMSFPPVIAGKSCIIADQSGSGK 179
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG-VPFRS 377
TLAYL+P+IQRLRQ+ELQGL KS+S SP ++ILAPTAELASQV NCRS+SK G VPF+S
Sbjct: 180 TLAYLVPIIQRLRQQELQGLHKSSSQSPTLLILAPTAELASQVFHNCRSISKSGVVPFKS 239
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
M+VTGGFRQKTQL+ L +GVDVLIATPGRF+FLI +G +++
Sbjct: 240 MLVTGGFRQKTQLDTLNQGVDVLIATPGRFLFLINQGFFAVLD 282
>gi|449498867|ref|XP_004160656.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 382
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 97/121 (80%), Positives = 110/121 (90%)
Query: 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361
V++GKSCI++DQSGSGKTLAYL+P+IQRLRQEEL+G KS+S SP++VI+ PTAELASQV
Sbjct: 9 VIDGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGHQKSSSKSPQIVIIVPTAELASQV 68
Query: 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
LSNCRS+SK GVPFRSMVVTGGFRQKTQL+NLQEGVDVLIATPGR M LI EG L L NL
Sbjct: 69 LSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLINEGFLLLSNL 128
Query: 422 R 422
R
Sbjct: 129 R 129
>gi|302762591|ref|XP_002964717.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
gi|300166950|gb|EFJ33555.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
Length = 420
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 119/159 (74%), Gaps = 2/159 (1%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F S K F+ LG S MI +L +RPS+IQA+++ V+ G SCI+ADQ+GSGKTLAYL
Sbjct: 15 FLSTKKFQALGASQEMIAALSSLEIVRPSEIQALSYKQVMRGNSCIIADQTGSGKTLAYL 74
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
P++QRLR++E +G + ST+ +PRV++LAPT+ELA QVLS CR+LS P +SMV TGG
Sbjct: 75 APLVQRLREDEEKG-NFSTAKNPRVLVLAPTSELAMQVLSVCRALSTT-CPLKSMVATGG 132
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
F+ KTQ+ENL G D+++ATPGRF+ ++E +QL L+
Sbjct: 133 FKWKTQVENLASGPDIVVATPGRFLHHLEEETIQLGKLQ 171
>gi|298710365|emb|CBJ31982.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 613
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 112/162 (69%), Gaps = 4/162 (2%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+S KS ++G SD + +LK +RPS+IQA+++ ++ G C++ADQ+GSGKTLAYL
Sbjct: 209 FYSIKSLPDIGASDLAVSALKSLGVVRPSKIQAISYSAILTGDHCVVADQTGSGKTLAYL 268
Query: 324 LPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
P++QRLR EEL + ++ G PRV+ILAPTAELA QV + LS VPFRS TG
Sbjct: 269 APLVQRLRLEELAEVHGRARPGRPRVLILAPTAELAQQVYGVAQRLSGS-VPFRSCCFTG 327
Query: 383 GFRQ--KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
G + KTQ + L+EGVDVL+ATPGR L++ G+L L + R
Sbjct: 328 GPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCR 369
>gi|302756457|ref|XP_002961652.1| hypothetical protein SELMODRAFT_403724 [Selaginella moellendorffii]
gi|300170311|gb|EFJ36912.1| hypothetical protein SELMODRAFT_403724 [Selaginella moellendorffii]
Length = 583
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 102/129 (79%), Gaps = 2/129 (1%)
Query: 294 IQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353
++A+++ V+ G SCI+ADQ+GSGKTLAYL P++QRLR++E +G + ST+ +PRV++LAP
Sbjct: 218 VKALSYKQVMRGNSCIIADQTGSGKTLAYLAPLVQRLREDEEKG-NFSTAKNPRVLVLAP 276
Query: 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
T+ELA QVLS CR+LS P +SMV TGGF+ KTQ+ENL G D+++ATPGRF+ ++E
Sbjct: 277 TSELAMQVLSVCRALSTT-CPLKSMVATGGFKWKTQVENLASGPDIVVATPGRFLHHLEE 335
Query: 414 GILQLINLR 422
+QL L+
Sbjct: 336 ETIQLGKLQ 344
>gi|307106205|gb|EFN54452.1| hypothetical protein CHLNCDRAFT_135879 [Chlorella variabilis]
Length = 565
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE--GKS 307
D P R +A FFS + LG S ++ +L+ RPS IQA A+ + + +
Sbjct: 82 DIPVVRPGQAASATFFSSDRWDALGASAEVVAALQTLGITRPSHIQAAAYRALAQSGARH 141
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+LAD +GSGKTLAYLLP++Q LR+EE + G + + PR+V++ PTAEL +QV+ CR
Sbjct: 142 VVLADHAGSGKTLAYLLPLLQVLREEERVLGAAATQPHCPRLVVVVPTAELCAQVVRVCR 201
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+LS+ G+ FRS TGG +TQ E L+ GVDVL+ TPGR L+ EG LQL R
Sbjct: 202 ALSRAGLRFRSAAATGGRPLRTQKEMLEGGVDVLVGTPGRLAELLGEGCLQLTFCR 257
>gi|255079722|ref|XP_002503441.1| predicted protein [Micromonas sp. RCC299]
gi|226518708|gb|ACO64699.1| predicted protein [Micromonas sp. RCC299]
Length = 831
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 115/176 (65%), Gaps = 14/176 (7%)
Query: 246 YEP---TDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
+EP T P +Y +FFS F +LG SD + E+LK RPS IQ++++ +
Sbjct: 397 FEPMVYTREPDDEDEY----NFFSGARFAQLGASDGVTEALKEMGIERPSHIQSLSYRAL 452
Query: 303 VEGKS---CILADQSGSGKTLAYLLPVIQRLRQ-EELQGLSKSTSGSPRVVILAPTAELA 358
E S +LADQ+GSGKTLAYLLP++QRL + E +G +K T PR+++L PT+ELA
Sbjct: 453 TEEDSNDHVLLADQAGSGKTLAYLLPLLQRLAETERTEGRAKPTR--PRMLVLVPTSELA 510
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKE 413
QVL R+LS+ G+ RS+ VTGG + +TQ+E ++EG DV++ TPGR +L+++
Sbjct: 511 VQVLGVIRTLSRGGLRCRSLAVTGGDKNSRTQIETIREGCDVVVGTPGRVGWLVQQ 566
>gi|384248412|gb|EIE21896.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 394
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 101/147 (68%), Gaps = 5/147 (3%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++L+ RPS IQA A+ + G + +LAD +GSGKTLAYLLP++Q LR+EE Q
Sbjct: 1 MVKALRGIGIERPSYIQAAAYQVLTSGARHIVLADHAGSGKTLAYLLPLVQALREEE-QS 59
Query: 338 LSKSTS--GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE 395
L S + +PRV+ILAPT EL +QVL R L+K G PFRS+ +TGGF+ +TQ E L E
Sbjct: 60 LCDSLTMRNAPRVIILAPTTELCAQVLMVARGLAK-GAPFRSIALTGGFKWRTQKEALDE 118
Query: 396 GVDVLIATPGRFMFLIKEGILQLINLR 422
GVDV++ATPGR IK G L+L R
Sbjct: 119 GVDVVVATPGRLGEHIKAGNLRLDQCR 145
>gi|302829735|ref|XP_002946434.1| hypothetical protein VOLCADRAFT_86719 [Volvox carteri f.
nagariensis]
gi|300268180|gb|EFJ52361.1| hypothetical protein VOLCADRAFT_86719 [Volvox carteri f.
nagariensis]
Length = 641
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 107/196 (54%), Gaps = 21/196 (10%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF-------- 299
P D P R G FF+ S++ +G + ++ +LK RPS IQA+AF
Sbjct: 154 PYDLPLVRPDDGDKGTFFAGSSWRHVGAMEEVVSALKTLGISRPSHIQALAFSALCGTGS 213
Query: 300 ----PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSPRVVILAPT 354
P +LADQ+GSGKTLAYL P++Q LRQEEL ++ T G PR +++APT
Sbjct: 214 GTKRAPAPPSAPIVLADQAGSGKTLAYLAPLMQILRQEELAAGTRVTRPGCPRGIVVAPT 273
Query: 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ--------KTQLENLQEGVDVLIATPGR 406
EL QVL R+LS G+ R+ TGG + +TQ L EGVD+L+ATPGR
Sbjct: 274 VELVQQVLRVARALSSAGLRCRTAAFTGGQKDEKARAVSFRTQKGVLGEGVDLLVATPGR 333
Query: 407 FMFLIKEGILQLINLR 422
++ G L+L + R
Sbjct: 334 LQKHLQGGTLELTDCR 349
>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++E++K + P+++QA+ P V+ G++ ++A +GSGKTLAYLLP++Q
Sbjct: 183 FNDLGLSDEVMEAVKELGLMEPTEVQAIGIPTVLAGENVVMASHTGSGKTLAYLLPIVQA 242
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR++E + + PR V+L PT ELA QV +SL FR+ +V GG R KTQ
Sbjct: 243 LRRDEAASGKFTRARRPRAVVLCPTRELAEQVFRVAKSLCH-HARFRAAMVGGGSRMKTQ 301
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
++L + +D+++ATPGR + I++G + +L++
Sbjct: 302 EDSLNKAIDLIVATPGRLLMHIEQGNMAYGDLKY 335
>gi|159464707|ref|XP_001690583.1| DEAD/DEAH box helicase-related protein [Chlamydomonas reinhardtii]
gi|158280083|gb|EDP05842.1| DEAD/DEAH box helicase-related protein [Chlamydomonas reinhardtii]
Length = 496
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 16/185 (8%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---VE 304
P D P R G FF+ +++ +G S+ ++ +LK RPS IQA AF +
Sbjct: 7 PYDLPIVRPYDGDKGTFFAGATWRGVGASEEVVAALKTLGIQRPSHIQAAAFTAFNTHSD 66
Query: 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSPRVVILAPTAELASQVLS 363
+ +LADQ+GSGKT+AYLLP++Q LR +EL + T PR +++APT EL QVL
Sbjct: 67 RSALVLADQAGSGKTMAYLLPLLQALRADELAAGGRVTQPRCPRGIVVAPTVELVQQVLR 126
Query: 364 NCRSLSKCGVPFRSMVVTGG----------FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
R+LS G+ R+ TGG FR TQ + L EGVD+L+ATPGR + +
Sbjct: 127 VARALSGAGLRLRTAAFTGGQADDKARAASFR--TQRDLLAEGVDLLVATPGRLQQHLAD 184
Query: 414 GILQL 418
G L+L
Sbjct: 185 GGLRL 189
>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP6]
gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP6]
Length = 427
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 98/156 (62%), Gaps = 5/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L D ++ ++ + + P+ IQ +A PP++EGK + Q+G+GKT A++LP++Q
Sbjct: 2 SFGNLNIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ E S GSPRV++LAPT ELA+Q+ + + K + FR +V+ GG RQ
Sbjct: 62 RMSAER----RASRPGSPRVLVLAPTRELAAQIGQSFATYGKF-LRFRQLVIFGGVRQGP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ L GVD+L+ATPGR + L+ +G ++L + ++
Sbjct: 117 QVNMLSRGVDILVATPGRLLDLMNQGYIELKGVEFF 152
>gi|30681173|ref|NP_849348.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
gi|108861892|sp|Q56X76.2|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
Length = 621
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEG 414
Q ++L +D+++ TPGR + I+EG
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEG 257
>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
Length = 620
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEG 414
Q ++L +D+++ TPGR + I+EG
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEG 257
>gi|412992636|emb|CCO18616.1| predicted protein [Bathycoccus prasinos]
Length = 888
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 41/197 (20%)
Query: 264 FFSRKSFKELGCSDYMIESLK-RQNFLRPSQIQAMAFPPVVEGKS--------------- 307
F+S FK++G S+ ++ +L+ R N RPS IQA +F ++ S
Sbjct: 412 FYSGAKFKDIGASELIVNALESRMNISRPSHIQAQSFKILLHDHSDSYDEESSVANDDEG 471
Query: 308 ---CILADQSGSGKTLAYLLPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
+LADQ+GSGKTL+YLLP++QRL R E G+S S PR ++L PT+ELA QV
Sbjct: 472 ANHVLLADQAGSGKTLSYLLPLLQRLERLERDSGMS--VSKRPRALVLVPTSELARQVTE 529
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQK-------------------TQLENLQEGVDVLIATP 404
+ LSK GV RSM+ TGG + TQ + L+ GVD++I TP
Sbjct: 530 VVKELSKGGVRTRSMIATGGASDRTKINRAEQSTRDLTAKFTLTQTKTLKSGVDIVIGTP 589
Query: 405 GRFMFLIKEGILQLINL 421
GR +L + G ++L +L
Sbjct: 590 GRIRYLCETGRMELDDL 606
>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
Length = 429
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 94/152 (61%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++E+L+ + + PS IQA A P V++G+ + A Q+G+GKT + LPV++R
Sbjct: 21 FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLER 80
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR + G G R ++L PT ELA+QVL N R+ S +P RS VV GG + Q
Sbjct: 81 LRHGKPAG-----RGQIRALVLTPTRELAAQVLENVRAYSSH-LPLRSDVVFGGVKANPQ 134
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L+ GVD+L+ATPGR + L ++G L L
Sbjct: 135 INRLRGGVDLLVATPGRLLDLHQQGALHFDQL 166
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG SD +++++ +Q + +PS IQ A PPV+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 TFKQLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q E S R +IL PT ELA+QV N R S+ RS+V+ GG QK
Sbjct: 62 ILSQTE-----TSRQRPIRALILTPTRELAAQVHENVRQYSEF-TDLRSLVIFGGVNQKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L GVDVL+ATPGR + L +G + L
Sbjct: 116 QVAALNRGVDVLVATPGRLLDLQNQGAICL 145
>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
Length = 621
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEG 414
Q ++L +D++ TPGR + I+EG
Sbjct: 231 PQEDSLNNAIDMVAGTPGRILQHIEEG 257
>gi|381188403|ref|ZP_09895965.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379650191|gb|EIA08764.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 428
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 96/151 (63%), Gaps = 8/151 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD +++++ ++ + PS IQ A PP++EGK + + Q+G+GKT + LP++Q
Sbjct: 2 SFNSLGLSDALLKAISKKGYTTPSPIQQKAIPPILEGKDVLASAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K S P R +IL PT ELA+Q+L+N + S+ + RS V+ GG QK
Sbjct: 62 ILAE------GKHLSHRPIRALILTPTRELAAQILANIKEYSEF-LDLRSTVIFGGVNQK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+D+L+ATPGR + L +G++ L
Sbjct: 115 PQVAQLRQGIDILVATPGRLIDLQNQGLITL 145
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + PS IQ A P V++GK + + Q+G+GKT + LP+I
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG K R ++L PT ELA+Q+ N SK V +SMV+ GG Q
Sbjct: 62 RLINNPKQGRRK-----IRALVLTPTRELAAQIQENVLEYSKY-VDIKSMVIFGGVNQNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ L++GVD+L+ATPGR + L +G+L L ++ +
Sbjct: 116 QVRTLRQGVDILVATPGRLLDLQNQGLLSLSDVEF 150
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + PS IQ A P V+EGK + + Q+G+GKT + LP++
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L QG K R ++L PT ELA+Q+ N R SK V +S V+ GG Q
Sbjct: 62 NLIANPRQGRRKV-----RALVLTPTRELAAQIYDNVREYSKY-VDIKSTVIFGGVNQNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +++GVD+L+ATPGR + L +G+L L ++ +
Sbjct: 116 QVRTIRQGVDILVATPGRLLDLENQGLLSLSDIEF 150
>gi|145351717|ref|XP_001420214.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580447|gb|ABO98507.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 431
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 103/163 (63%), Gaps = 14/163 (8%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPV---VEGKSC-------ILAD 312
FFS F +LG SD + +LK RPS IQA ++ + V G S +LAD
Sbjct: 15 FFSGARFNQLGASDEVRAALKESFKIDRPSHIQAQSYRVLSGDVAGASAPRYDGHVLLAD 74
Query: 313 QSGSGKTLAYLLPVIQRLRQEEL-QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
Q+GSGKTLAYLLP++QR+++ E+ QG SKS PR+++L PT+ELA+QV + LS
Sbjct: 75 QAGSGKTLAYLLPLLQRVQKIEVEQGRSKSKK--PRLLVLTPTSELATQVRDVVKQLSFG 132
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
G+ RS++ + +TQ+E L +GVD+++ TPGR LI+EG
Sbjct: 133 GLRSRSLLANNVSKSRTQIEALVDGVDIVVGTPGRVARLIEEG 175
>gi|417948797|ref|ZP_12591939.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809160|gb|EGU44284.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 423
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 88/148 (59%), Gaps = 13/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG SD+++ +L+ NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSDHLLATLEELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL L+ + P R ++L PT ELA QV N S +K G + +V
Sbjct: 64 IIQRL-------LATKDNVIPNPKLVRALVLVPTRELAQQVFDNVSSYAK-GTDLKVVVA 115
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG K Q +NL++G D+L+ATPGR +
Sbjct: 116 YGGVSMKVQTDNLRQGADILVATPGRLI 143
>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 425
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 93/153 (60%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++K Q + PS IQAMA P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E K+ S + R ++L PT ELA+QV N + S+ +P R+ VV GG +
Sbjct: 62 LLSKGE-----KARSNNVRALVLTPTRELAAQVHENAAAYSQ-NLPLRAEVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR + L + + L
Sbjct: 116 QMMKLRRGVDVLVATPGRLLDLFSQNAISFKQL 148
>gi|336172862|ref|YP_004580000.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334727434|gb|AEH01572.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 444
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 98/156 (62%), Gaps = 6/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK+LG S+ +++++ ++ + PS IQA A PPV++G + + Q+G+GKT + LP++
Sbjct: 2 SFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K R ++L PT ELA+QV +N + S+ + RS+V+ GG QK
Sbjct: 62 ILSEN-----PKEKFRPIRALVLTPTRELAAQVYANVKEYSEF-LNLRSVVIFGGVNQKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ N+++GVDVL+ATPGR + L +G+L L + +
Sbjct: 116 QVANIRKGVDVLVATPGRLIDLNNQGLLSLKRVEIF 151
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 94/150 (62%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + ++ R F P+ +Q A P V+ G+ + A ++G+GKT A+ LP+I+
Sbjct: 4 TFEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVLAGRDVVAAAKTGTGKTAAFALPLIE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E +K GSPRV+++ PT ELA Q+ + C +++ G R + V GG K
Sbjct: 64 RLAGDE----AKRRPGSPRVLVVTPTRELAQQIDAACSDMTR-GSRVRVLSVVGGMPYKG 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L +G+D+LIATPGR L++ G ++L
Sbjct: 119 QIARLNKGIDILIATPGRLFDLMQRGDVKL 148
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 8/151 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG S+ +++++ ++ + PS IQ A PPV+EGK + + Q+G+GKT + LP++
Sbjct: 2 TFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ K+ P R +IL PT ELA+Q+ +N + S+ + RS V+ GG QK
Sbjct: 62 LLSEQ------KALRHRPVRALILTPTRELAAQIFANVKEYSEF-LDLRSAVIFGGVNQK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ NL+ G+DVL+ATPGR + L + L L
Sbjct: 115 PQIANLKRGMDVLVATPGRLLDLHNQRFLSL 145
>gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like
[Brachypodium distachyon]
Length = 625
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG + ++ +++ +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q
Sbjct: 92 SFEELGLEEEVMAAMREAGISKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQ 151
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR +E G+S PR V+L PT EL QV +S+S FRS +V+GG R +
Sbjct: 152 LLRHDEATLGMSLKPR-RPRAVVLCPTRELTEQVFRVAKSISHHA-RFRSTMVSGGTRLR 209
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q ++L VD+++ TPGR + IKEG + ++++
Sbjct: 210 PQEDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKY 245
>gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays]
gi|194689078|gb|ACF78623.1| unknown [Zea mays]
gi|224029523|gb|ACN33837.1| unknown [Zea mays]
gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 613
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 95 ESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 154
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 155 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 212
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ Q ++L VD+++ TPGR + IK+G + ++++
Sbjct: 213 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKY 249
>gi|410671946|ref|YP_006924317.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
gi|409171074|gb|AFV24949.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
Length = 408
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L D + +L ++ ++ P+ IQ + P +++GK I Q+G+GKT A++LP++QR
Sbjct: 3 FKDLNLIDPLQRALTKEGYIEPTPIQVQSIPQLLKGKDLIGIAQTGTGKTAAFVLPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +T G PRV++LAPT ELA+Q+ + + + F+ VV GG Q Q
Sbjct: 63 MHEKH----KHTTPGFPRVLVLAPTRELAAQIGDSFAAYGHF-LHFKHTVVFGGVSQVPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
+++ +GVD+L+ATPGR + L+ +GI++L + ++
Sbjct: 118 FKSITKGVDILVATPGRLLDLMDQGIVKLSGVEFFV 153
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL++ STS SP R +IL+PT ELA Q+ N + +K +P RS VV GG
Sbjct: 62 RLKK------FASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY-LPLRSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ GV++LIATPGR + + + +QL
Sbjct: 115 MNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQL 149
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL++ STS SP R +IL+PT ELA Q+ N + +K +P RS VV GG
Sbjct: 62 RLKK------FASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY-LPLRSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ GV++LIATPGR + + + +QL
Sbjct: 115 MNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQL 149
>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 453
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQ A P V+EGK + A Q+G+GKT A+ LP+++
Sbjct: 2 SFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++ S R +IL PT ELA+QV C S+ +P RS VV GG +
Sbjct: 62 RLSKGD-----RARSNQARALILTPTRELAAQV-GECVSIYSSKLPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDV++ATPGR + L + ++ +L
Sbjct: 116 QMMRLRRGVDVIVATPGRLLDLYNQNAVRFQDL 148
>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 601
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+EL SD ++ +++ P++IQ + P V++GKS +L +GSGKTLAY+LP++Q
Sbjct: 122 SFEELSLSDEVMGAVREMEIEVPTEIQCIGIPAVLDGKSVVLGSHTGSGKTLAYMLPLVQ 181
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR++E L GL PR ++L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LLRRDEALLGLLMKPR-RPRAIVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRMR 239
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q ++L +D+++ TPGR + I++G + ++++
Sbjct: 240 PQEDSLNSPIDMIVGTPGRILQHIEDGNMVYGDIKY 275
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 13/155 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++E++ + P+ IQA A P V++G+ + A Q+G+GKT A+ LP++ +
Sbjct: 3 FDQLGLAPSLLEAVAAAGYSEPTPIQAKAIPAVLDGQDVLAAAQTGTGKTAAFTLPLLHK 62
Query: 330 L--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L RQE+ PRV++LAPT ELA+QV + R+ K G RS V+ GG +
Sbjct: 63 LGDRQEK----------KPRVLVLAPTRELAAQVNESVRTYGKSGA-IRSTVIFGGVGYQ 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ ++GVD+++ATPGR + L++EG L N++
Sbjct: 112 PQIAQFKKGVDIVVATPGRLLDLLQEGHADLSNIQ 146
>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
Length = 618
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 108 ESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 167
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 168 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVFRVAKSISHHA-RFRSTMVSGGSRI 225
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ Q ++L VD+++ TPGR + IK+G + ++++
Sbjct: 226 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKY 262
>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
Length = 612
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 94 ESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 153
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 154 QLLRRDEAMLGISMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 211
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ Q ++L VD+++ TPGR + IK+G + ++++
Sbjct: 212 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKY 248
>gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
Length = 635
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ +++ P++IQ + P V+EG+S +L +GSGKTLAY+LP++Q
Sbjct: 120 SFEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQ 179
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR++E PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 180 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRP 238
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEG 414
Q ++L +D+++ TPGR + I+EG
Sbjct: 239 QEDSLNIPIDMVVGTPGRVLQHIEEG 264
>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 423
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 88/146 (60%), Gaps = 9/146 (6%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S++++ +L NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+IQRL + + + +P++V +L PT ELA QV N S +K G + +V G
Sbjct: 64 IIQRLIETK-----DNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAK-GTDIKVVVAYG 117
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFM 408
G K Q ENL+ G D+L+ATPGR +
Sbjct: 118 GVSMKVQTENLRGGADILVATPGRLI 143
>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
Length = 625
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q
Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 170
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R +
Sbjct: 171 LLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVFRVAKSISHHA-RFRSTMVSGGSRIR 228
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q ++L VD+++ TPGR + IK+G + ++++
Sbjct: 229 PQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKY 264
>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 438
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 88/143 (61%), Gaps = 8/143 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + +PS IQ A P ++EGK + + Q+G+GKT + LPV+Q
Sbjct: 2 SFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K P R ++L PT ELA+QV N R SK V +S VV GG +
Sbjct: 62 YLSE------TKHPKYRPIRALVLTPTRELAAQVHDNVREYSKY-VNIKSAVVFGGVKAA 114
Query: 388 TQLENLQEGVDVLIATPGRFMFL 410
+Q+ L+ GVD+L+ATPGR + L
Sbjct: 115 SQIATLKRGVDILVATPGRLLDL 137
>gi|413942754|gb|AFW75403.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 360
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 95 ESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 154
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 155 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 212
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ Q ++L VD+++ TPGR + IK+G + ++++
Sbjct: 213 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKY 249
>gi|302766713|ref|XP_002966777.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
gi|300166197|gb|EFJ32804.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
Length = 464
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 103/167 (61%), Gaps = 9/167 (5%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF ELG ++ + +++ + P+++Q MA P +++G++ ++A +GSGKTLAY+LP
Sbjct: 99 STQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLP 158
Query: 326 VIQR-----LRQEELQGLSKSTSGSPRVVILAPTAELASQVL--SNCRSLSKCG--VPFR 376
++Q LR++E++ + PR ++L PT EL QVL RSL K FR
Sbjct: 159 LVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSHHARFR 218
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
S +++GGFR + Q + L +D+++ TPGR + ++EG L ++++
Sbjct: 219 SAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKY 265
>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 423
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 13/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S++++ +L NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL L+ + P R ++L PT ELA QV N S +K G + +V
Sbjct: 64 IIQRL-------LATKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAK-GTDLKVVVA 115
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG K Q +NL+ G D+L+ATPGR +
Sbjct: 116 YGGVSMKVQTDNLRAGADILVATPGRLI 143
>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
Length = 436
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 6/157 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S+ ++ ++ ++ + PS IQA A PPV+E K + + Q+G+GKT + LP++
Sbjct: 2 SFKSLGLSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q +Q R +IL PT ELA+QV +N + S+ + +S V+ GG QK
Sbjct: 62 LLSQRPVQ-----KHRPIRALILTPTRELAAQVHTNVKEYSEF-LNIKSTVIFGGVNQKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ +++GVDVL+ATPGR + L +G+L L + +
Sbjct: 116 QVATIRKGVDVLVATPGRLIDLESQGLLSLKRVEIFV 152
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++L + + P+ IQ A PPV+EG+ I Q+G+GKT A+ LP++ R
Sbjct: 12 FSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHR 71
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G K+ RV+IL+PT EL++Q+ + L + + RS VV GG + Q
Sbjct: 72 LAPGKPAGPKKA-----RVLILSPTRELSAQIAKTVKDLGRK-LSLRSAVVVGGVSIRPQ 125
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ L GVDVLIATPGR M LI++ + L
Sbjct: 126 IKTLASGVDVLIATPGRLMDLIEQRAVSL 154
>gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ ++ +++ PS+IQ + P V+EGKS IL +GSGKTLAYLLP++Q
Sbjct: 122 FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181
Query: 330 LRQ-EELQG-LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ EEL G L K PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LRRDEELFGRLMKPR--RPRAVVLCPTRELSEQVFRVSKSISHHA-RFRSTMVSGGGRLR 238
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q ++L +D+++ TPGR + I+ G + ++++
Sbjct: 239 PQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKY 274
>gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ ++ +++ PS+IQ + P V+EGKS IL +GSGKTLAYLLP++Q
Sbjct: 122 FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181
Query: 330 LRQ-EELQG-LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ EEL G L K PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LRRDEELFGRLMKPR--RPRAVVLCPTRELSEQVFRVSKSISHHA-RFRSTMVSGGGRLR 238
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q ++L +D+++ TPGR + I+ G + ++++
Sbjct: 239 PQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKY 274
>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
Length = 591
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 104/169 (61%), Gaps = 11/169 (6%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF ELG ++ + +++ + P+++Q MA P +++G++ ++A +GSGKTLAY+LP
Sbjct: 99 STQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLP 158
Query: 326 VIQR-----LRQEELQGLSKSTSGSPRVVILAPTAELASQVL--SNCRSLSK---C-GVP 374
++Q LR++E++ + PR ++L PT EL QVL RSL K C
Sbjct: 159 LVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSFCHHAR 218
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
FRS +++GGFR + Q + L +D+++ TPGR + ++EG L ++++
Sbjct: 219 FRSAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKY 267
>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
Length = 399
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 92/142 (64%), Gaps = 6/142 (4%)
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+E+L+ + + PS IQA A P V++G+ + A Q+G+GKT + LPV++RLR + G +
Sbjct: 1 MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRA 60
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
+ R ++L PT ELA+QVL N ++ S+ +P RS VV GG + Q++ L+ GVD+
Sbjct: 61 QI-----RALVLTPTRELAAQVLENVKAYSRH-LPLRSDVVFGGVKANPQIDRLRGGVDL 114
Query: 400 LIATPGRFMFLIKEGILQLINL 421
L+ATPGR + L ++G L+ L
Sbjct: 115 LVATPGRLLDLHQQGALRFDQL 136
>gi|383455776|ref|YP_005369765.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
gi|380732540|gb|AFE08542.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
Length = 484
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL +D +++++K + + P+ IQA A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLTDSLLKAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELASQV + + K +P R VV GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELASQVSDSFATYGK-NLPLRHAVVFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L++GVD+L+ATPGR + LI +G + L L +
Sbjct: 117 QVQALRQGVDILVATPGRLLDLIDQGFVTLRALEVF 152
>gi|4538903|emb|CAB39640.1| putative protein [Arabidopsis thaliana]
gi|7267668|emb|CAB78096.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 7/151 (4%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRL----RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
Q L R++E K+ PR V+L PT EL+ QV C FRS++V+GG
Sbjct: 172 QVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQV---CLHQDYHHARFRSILVSGG 228
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
R + Q ++L +D+++ TPGR + I+EG
Sbjct: 229 SRIRPQEDSLNNAIDMVVGTPGRILQHIEEG 259
>gi|358346247|ref|XP_003637181.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503116|gb|AES84319.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 684
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG D ++ +++ P++IQ + P V++GKS +L +GSGKTLAYLLP++Q
Sbjct: 110 SFEGLGLGDEVMGAVREMGIEVPTEIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQ 169
Query: 329 RLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ E++ GL PR V+L PT EL+ QV +++S FR +V+GG R +
Sbjct: 170 LLRRDEQMNGLVLKPK-RPRAVVLCPTRELSEQVFRVAKAISHHA-RFRCTMVSGGGRLR 227
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E+L +D+++ TPGR + I+EG + ++++
Sbjct: 228 PQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQY 263
>gi|356499257|ref|XP_003518458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 636
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 3/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ +++ P++IQ++ P V+E KS +L +GSGKTLAYLLP+ Q
Sbjct: 130 SFEELGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQ 189
Query: 329 RLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ E+L G+ PR V+L PT EL+ QV +S+S FR +V+GG R +
Sbjct: 190 LLRRDEQLNGILLKPR-RPRAVVLCPTRELSEQVFRVAKSISHHA-RFRCTMVSGGGRLR 247
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q ++L +DV++ TPGR + I+EG + ++++
Sbjct: 248 PQEDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKY 283
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 2 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 62 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + ++
Sbjct: 120 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFV 156
>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 443
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 8/150 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + +++R F P+ +Q A P V+EG+ + A +G+GKT A+ LP+ +
Sbjct: 33 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 92
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ G +K GSPR ++++PT ELA Q+ + C L+K R + V GG + K
Sbjct: 93 RI------GRAKR-PGSPRALVVSPTRELAQQIDAACTQLAKAS-NRRMLTVMGGTKYKG 144
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L G+DVL+ATPGR L++ G+++L
Sbjct: 145 QIAKLDRGIDVLVATPGRLYDLMERGVVKL 174
>gi|392399099|ref|YP_006435700.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390530177|gb|AFM05907.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 461
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF +LG SD +++++K+ + PS IQ P V++ K + + Q+G+GKT + LP++
Sbjct: 12 KSFADLGLSDELLQAVKKVGYTSPSPIQEKVIPFVLDRKDVLASAQTGTGKTAGFTLPML 71
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L Q +++ SK S R +IL PT ELA+QV N + S+ + RS V+ GG Q
Sbjct: 72 QLLTQ-DVKQRSKIRRRSLRCLILTPTRELAAQVFENVKEYSEF-LDIRSAVIFGGVNQN 129
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR + L + L L ++
Sbjct: 130 PQIRTLKNGVDVLVATPGRLLDLEGQKALSLADV 163
>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
Length = 449
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 96/160 (60%), Gaps = 6/160 (3%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
SA ++ +F +LG S ++++L+ + + PS IQ A P V+ G+ + A Q+G+GK
Sbjct: 6 SASSALTAKATFDDLGLSAPLLQALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGK 65
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
T + LP++ E L ++ G R ++L PT ELA+QVL N R S+ + RS
Sbjct: 66 TAGFTLPML-----ETLSHGARPGRGQIRALVLTPTRELAAQVLDNARDYSRH-LRLRSE 119
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
VV GG + Q++ LQ+GVD+L+ATPGR + L ++G ++
Sbjct: 120 VVFGGVKINPQIQRLQQGVDLLVATPGRLLDLHQQGAVRF 159
>gi|358449520|ref|ZP_09160004.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357226275|gb|EHJ04756.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 440
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G + T PR +IL PT ELA+QV + SK VP ++ VV GG +
Sbjct: 62 RL------GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-VPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+DVL+ATPGR M L ++ ++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRF 144
>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
gi|215919015|ref|NP_819700.2| ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493]
gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
Length = 420
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + ++
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFV 165
>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
Length = 442
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S ++ ++ R + +P+ IQA A P ++G+ +L+ Q+GSGKT A++LP++Q
Sbjct: 4 TFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L E + S PR +I+ PT ELA QV + S+ S+ + GG +
Sbjct: 64 QLAAE------PTKSKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ L++GV +++ATPGR + ++EG L L +R+
Sbjct: 118 QIRALKKGVSIVVATPGRLLDHVREGHLDLSQIRY 152
>gi|408374555|ref|ZP_11172240.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407765513|gb|EKF73965.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 452
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ + + +PS IQA A P V++GK + A Q+G+GKT + LP+++
Sbjct: 2 SFSNLGLSDALLSAVAEKGYTQPSPIQAQAIPAVLDGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K R ++L PT ELA+QV + + K +P RS VV GG +
Sbjct: 62 RLSHG-----PKVRHNQVRALVLTPTRELAAQVAESVETYGK-NLPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVDVL+ATPGR + L ++ ++ L
Sbjct: 116 QMQRLRGGVDVLVATPGRLLDLYQQNAVRFDQL 148
>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
Length = 441
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 91/150 (60%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + T PRV+ILAPT ELA+QV + S+ +P +S VV GG +
Sbjct: 62 RLAE------NPRTGKGPRVLILAPTRELAAQVHDSVALYSRY-MPTKSAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+DVL+ATPGR M L ++ ++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRF 144
>gi|385333348|ref|YP_005887299.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 440
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G + T PR +IL PT ELA+QV + SK +P ++ VV GG +
Sbjct: 62 RL------GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-IPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+DVL+ATPGR M L ++ ++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRF 144
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + +++++++Q + PS IQ A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L G + S R +IL PT ELA+QV N +S S+ +P ++ VV GG
Sbjct: 62 RL----LDG-RPAASNCVRALILTPTRELAAQVEENVKSFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVDVLIATPGR + L ++ ++ L
Sbjct: 116 QMKALRSGVDVLIATPGRLLDLYQQNAVKFSQL 148
>gi|442320812|ref|YP_007360833.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
gi|441488454|gb|AGC45149.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
Length = 497
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++ ++K + + P+ IQA A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLHDTLLRAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K +P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGESFMTYGK-NLPLRHAVIFGGVGQGA 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+++LQ GVDVL+ATPGR + L+ +G + L +L +
Sbjct: 117 QVQSLQRGVDVLVATPGRLLDLMDQGYVSLRSLEVF 152
>gi|313682085|ref|YP_004059823.1| dead/deah box helicase domain-containing protein [Sulfuricurvum
kujiense DSM 16994]
gi|313154945|gb|ADR33623.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
16994]
Length = 458
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++E+L + + P+ IQA P V+ G+ + A Q+G+GKT A+ LP+IQ
Sbjct: 2 SFTTLGLSAHLLETLSAKGYSEPTPIQAQVIPLVLRGRDILGAAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S+S S R +I+ PT ELASQV RS ++ G+ + + GG
Sbjct: 62 KLNAS-----SESGQASARALIIVPTRELASQVAEAIRSYAE-GLELNCIALYGGANMAR 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q + L EGVD+++ATPGR + L K+G + L + +
Sbjct: 116 QAKELSEGVDIIVATPGRLIELNKQGHVPLSRIEY 150
>gi|407068274|ref|ZP_11099112.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 423
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 9/146 (6%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S++++ +L NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSEHLLATLAELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+IQRL + + + +P++V +L PT ELA QV N +K G + +V G
Sbjct: 64 IIQRLIETK-----DNIIPNPKLVRALVLVPTRELAQQVFDNVTEYAK-GTDIKVVVAYG 117
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFM 408
G K Q +NL+ G D+L+ATPGR +
Sbjct: 118 GVSMKVQTDNLRGGADILVATPGRLI 143
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 88/143 (61%), Gaps = 8/143 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG S ++++++ + + +PS IQ A P ++EGK + + Q+G+GKT + LPV+Q
Sbjct: 2 TFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K P R ++L PT ELA+QV N R SK V +S VV GG K
Sbjct: 62 YLVE------TKHPKYRPLRALVLTPTRELAAQVHDNVREYSKY-VDIKSTVVFGGVNAK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 115 PQIATLRSGVDILVATPGRLLDL 137
>gi|348030411|ref|YP_004873097.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
gi|347947754|gb|AEP31104.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
Length = 414
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++++L+ Q + PS IQA A P V+ + Q+G+GKT A+ LP+IQ
Sbjct: 2 SFSSLGLCDELLKTLQEQGYESPSPIQAKAIPVVLNHHDVMAVAQTGTGKTAAFTLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L G S + SPR +++ PT ELA+QV N ++ S+ + RS V GG R +
Sbjct: 62 L-----LAGGENSQAQSPRALVIVPTRELAAQVGENVQNYSR-HMNIRSAAVFGGVRIEP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ LQ GVD+L+ATPGR + L +G L
Sbjct: 116 QIFQLQNGVDLLVATPGRLIDLFNQGALNF 145
>gi|404406153|ref|ZP_10997737.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 541
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 92/155 (59%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG S+ ++ ++ + + P+ IQ A PPV+EG+ Q+G+GKT A+ LP++Q
Sbjct: 3 FQDLGLSEPLLRAIGEKGYTDPTPIQQQAIPPVLEGRDLQGCAQTGTGKTAAFTLPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + R +++ PT ELA Q+ CR ++ + R V+ GG Q+ Q
Sbjct: 63 LAAEPAARGRREI----RALVITPTRELAIQIDECCRDYARY-LSIRHCVIFGGVNQRPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ LQ GVD+L+ATPGR + LI +G + L +R++
Sbjct: 118 VDALQRGVDLLVATPGRLLDLIGQGYISLDKIRFF 152
>gi|435852049|ref|YP_007313635.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433662679|gb|AGB50105.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 422
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 9/158 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ L + +L+ + ++ P+ IQA A P ++E + I Q+G+GKT A++LP++Q
Sbjct: 2 SFENLKIKKTLQRALESEGYITPTPIQAQAIPHLLENRDLIGIAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
+L + S S +PRV++LAPT ELA+Q+ S S G + FR VV GG Q
Sbjct: 62 KLSETN----KPSKSRAPRVLVLAPTRELAAQI---GDSFSTYGQFIRFRYTVVFGGVGQ 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L GVDVLIATPGR + L+ +G ++L + ++
Sbjct: 115 GPQVKALAHGVDVLIATPGRLLDLLDQGHVKLNEVEFF 152
>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
Length = 461
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG + S S RV++L PT ELA QVL + CG+ R + GG
Sbjct: 62 RLVQ---QGPAVS-SNRARVLVLVPTRELAEQVLQSFADYG-CGLELRMLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVDVL+ATPGR + L ++ +Q +R
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVR 150
>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
gi|226516278|gb|ACO62273.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 403
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF +LG + ++ + RP+ IQA A P ++ G ++A +GSGKTL YLLPVI
Sbjct: 1 ESFADLGLEEALVAATDSMGLTRPTDIQASAIPKILSGGHFLVASHTGSGKTLTYLLPVI 60
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q+++ E + +++ PRV+I+ PT ELA QV S +++S F S ++ GG +
Sbjct: 61 QQMKDAERETGARAKPKRPRVLIVGPTRELAEQVRSVAKAVSH-HCKFSSELIIGGEKFA 119
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
TQ + L +DV++ TPGR + +EG L L N+
Sbjct: 120 TQRQVLDRSLDVVVGTPGRIIKHCEEGNLFLSNV 153
>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 479
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG + ++++L +Q F RP+ IQA A P ++EG+ I Q+G+GKT A+ LP++
Sbjct: 4 FRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILHA 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + G RV++L+PT ELASQ+ R+L + VV GG Q
Sbjct: 64 L----ITHPTPAPRGGARVLVLSPTRELASQIAETFRTLGQSHA-LSVAVVFGGVSPGAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ LQ G+D+L+ATPGR + I G+ L ++
Sbjct: 119 IKALQRGLDILVATPGRLVDHIDSGVAHLGKTEFF 153
>gi|219122436|ref|XP_002181551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406827|gb|EEC46765.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 603
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 99/163 (60%), Gaps = 15/163 (9%)
Query: 264 FFSRKS-------FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
FFSRKS ++ G S+ + + RPS+IQ++A+P + +G I+ADQ+GS
Sbjct: 134 FFSRKSLQDPIFAYQTKGASETFAQLCQGAGIARPSKIQSLAWPILCKGSHTIVADQTGS 193
Query: 317 GKTLAYLLPVIQR-LRQEELQGLSKST-SGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
GKTLAYL+P++ R L Q + +GSPR+++LAPTAELA Q+ + C ++ V
Sbjct: 194 GKTLAYLIPLLTRALEDRNAQPAGTAVPNGSPRIIVLAPTAELADQIRAVCEQMT-ASVS 252
Query: 375 FRSMVVTGGFRQKT----QLENLQ-EGVDVLIATPGRFMFLIK 412
F ++V+T + T Q+ LQ + VDVLI+TPGR +++
Sbjct: 253 FSTLVITATGKYSTSIRDQIRMLQRQPVDVLISTPGRIATILR 295
>gi|399546760|ref|YP_006560068.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
gi|399162092|gb|AFP32655.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT ++LP++Q
Sbjct: 2 SFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + T PRV+IL PT ELA+QV + S+ VP R+ VV GG +
Sbjct: 62 MLEQ------NPRTGKGPRVLILTPTRELAAQVHDSVNLYSRY-VPTRAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+DVL+ATPGR M L ++ ++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRF 144
>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. fetus 82-40]
gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. fetus 82-40]
Length = 624
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S ++E+LK N+ P+QIQ +A P +++GK + ++G+GKT A+ LP++++
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E T RV++L PT ELA+QV N +S +K +PF+++ V GG Q
Sbjct: 63 LSSKERNKKRPQT----RVLVLVPTRELANQVTQNIKSYAK-KLPFKTLPVFGGVSSYPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ L+ G+D+++ATPGR + L + L L
Sbjct: 118 IQALKSGIDIVVATPGRLLDLALQNALSL 146
>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 423
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 9/146 (6%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF +LG S+ ++ +L NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STRSFNQLGLSEQLLTTLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+IQRL + + + +P++V +L PT ELA QV N S +K G + +V G
Sbjct: 64 IIQRLIETK-----DNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAK-GTDIKVVVAYG 117
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFM 408
G K Q +NL+ G D+L+ATPGR +
Sbjct: 118 GVSMKVQTDNLRGGADILVATPGRLI 143
>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
Length = 444
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT ++LP++Q
Sbjct: 2 SFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + T PRV+IL PT ELA+QV + S+ VP R+ VV GG +
Sbjct: 62 MLEQ------NPRTGKGPRVLILTPTRELAAQVHDSVNLYSRY-VPTRAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+DVL+ATPGR M L ++ ++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRF 144
>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
gi|225201660|gb|EEG84014.1| DEAD/DEAH box helicase [Proteus penneri ATCC 35198]
Length = 475
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 90/150 (60%), Gaps = 6/150 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEK 63
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q +K+ P + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 64 LSQSA----TKTKGRQPVKALILTPTRELAAQIAENVKAYSRY-IPIRSLVVFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + + L
Sbjct: 119 QMMKLRGGVDVLIATPGRLLDLEHQNAVDL 148
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 5/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++ ++K + + P+ IQ A P + G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + ++ K G+P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGDSFQTYGK-GLPLRHAVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L+ GVDVL+ATPGR + L+++G + L +L +
Sbjct: 117 QVQALRNGVDVLVATPGRLLDLMEQGFVSLRSLEVF 152
>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 414
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 8/150 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + +++R F P+ +Q A P V+EG+ + A +G+GKT A+ LP+ +
Sbjct: 4 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ G +K GSPR ++++PT EL Q+ + C L+K R + V GG + K
Sbjct: 64 RI------GRAKR-PGSPRALVVSPTRELTQQIDAACTQLAKAS-NRRMLTVMGGTKYKG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L G+DVL+ATPGR L++ G+++L
Sbjct: 116 QIAKLDRGIDVLVATPGRLYDLMERGVVKL 145
>gi|357031470|ref|ZP_09093413.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414700|gb|EHH68344.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 398
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 8/158 (5%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S F LG ++ +L++ RPS IQ A P ++ G+ ++A Q+GSGKT A++LP
Sbjct: 23 SSPDFPALGLMPPLLAALEQAGHKRPSDIQTEAIPALLAGRDVLVASQTGSGKTAAFVLP 82
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++Q+L + E T+G PR +IL PT ELA+Q S CR+L + +P ++ V+ GG
Sbjct: 83 MLQKLAETE------RTNG-PRALILEPTRELAAQTASVCRTLGR-RLPLKTRVICGGIS 134
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
++ QL L +G D+L+AT GR + + + + L NL +
Sbjct: 135 REQQLRTLADGPDILVATHGRLLDFVTQADIVLENLTY 172
>gi|372271032|ref|ZP_09507080.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 433
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD +++++ Q + PS IQ A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSDAILKAISDQGYDTPSPIQQQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + E ++ + RV+IL PT ELA+QV + + K + +S VV GG +
Sbjct: 62 RLSKGE-----RAKANQARVLILTPTRELAAQVADSVATYGKH-LQLKSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++G D+LIATPGR + L + ++ NL
Sbjct: 116 QMMALRKGADILIATPGRLLDLHSQNAVRFDNL 148
>gi|303275115|ref|XP_003056857.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461209|gb|EEH58502.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 533
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E G D + + P+ IQ++A P ++ G + ++A +GSGKTL YLLP+I
Sbjct: 95 SFRETGLDDELCAATDALGLETPTDIQSVAIPRILRGGNYMIASHTGSGKTLTYLLPIIH 154
Query: 329 RLRQEE--LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
R+R+EE G ++ PRV++++PT ELA QV +SLS F S +V GG +
Sbjct: 155 RIRREENATVGGGRARPKRPRVLVVSPTRELAEQVAGVAKSLSHHA-RFSSALVIGGDKF 213
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
TQ L +DV++ TPGR + +KEG + L
Sbjct: 214 ATQRTQLDRSLDVVVGTPGRLVKHVKEGNMYL 245
>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
Length = 443
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + T PR +IL PT ELA+QV + SK VP ++ VV GG +
Sbjct: 62 RLAE------NPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-VPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+DVL+ATPGR M L ++ ++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRF 144
>gi|224008030|ref|XP_002292974.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971100|gb|EED89435.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 661
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 105/176 (59%), Gaps = 27/176 (15%)
Query: 264 FFSRKSFKELGCS----DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
F+S+KS + S + + + RPS+IQ++A+PP++ G++CI+ADQ+GSGKT
Sbjct: 169 FYSQKSLTDPSFSIPNTSFFPQLCQSAKITRPSRIQSLAWPPLLRGENCIVADQTGSGKT 228
Query: 320 LAYLLPVIQRL----RQEEL-QGLS-----KSTSGSPRVVILAPTAELASQVLSNC---- 365
LAY+LP++Q+L R++E+ + L+ K +GSPR+V+L PTAELA Q+ S C
Sbjct: 229 LAYMLPLLQKLHLSDRKDEMDESLTITQRKKMRTGSPRIVVLTPTAELADQIHSVCTGLN 288
Query: 366 RSLSKCG----VPFRSMVVTGGFRQKT----QLENLQEG-VDVLIATPGRFMFLIK 412
+LSK G F V T T Q+ LQ VDVLI+TPGR +++
Sbjct: 289 ENLSKQGGVDAWNFSPFVTTATGSHATNIRDQIRMLQSTPVDVLISTPGRLATILR 344
>gi|407688996|ref|YP_006804169.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292376|gb|AFT96688.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 483
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG + R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDVLIATPGR + L ++ ++ L
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQL 148
>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
gi|217985744|gb|EEC52085.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 392
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L ++ ++++++ + ++ P+ IQA A P ++ GK + Q+G+GKT A+ +P+IQ
Sbjct: 22 TFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQ 81
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ + KS + S + +IL PT ELA Q+ S C R V+ GG Q+T
Sbjct: 82 QLQAD------KSLNNSIKALILTPTRELALQI-SECIDDYAKYTQVRHGVIFGGVNQRT 134
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ L +GVD+L+ATPGR + L+ +G ++L N++ +
Sbjct: 135 QVNMLHKGVDILVATPGRLLDLMNQGYVRLNNIQHFV 171
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 73 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQL 159
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 90/150 (60%), Gaps = 8/150 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK LG S+ +++++ Q + P+ IQ + P V+EGK + + Q+G+GKT + LP++Q
Sbjct: 3 FKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQL 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + P R +IL PT ELA+QV + + K V RS V+ GG QK+
Sbjct: 63 LSQ------TPPLRNRPVRALILTPTRELAAQVHQSVKDYGKF-VDLRSTVIFGGVNQKS 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L +G+L L
Sbjct: 116 QVSTLRNGVDVLVATPGRLIDLNNQGLLSL 145
>gi|441504874|ref|ZP_20986866.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
gi|441427456|gb|ELR64926.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
Length = 498
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++E++ Q + +PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLCTPILEAVANQGYEKPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + S R +IL PT ELA+QV N + SK +P S VV GG +
Sbjct: 62 RLSKGPI-----VRSNQVRALILTPTRELAAQVGENVATYSKR-LPLSSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ +++G DVL+ATPGR + L + ++ L
Sbjct: 116 QMMRMRKGADVLVATPGRLLDLYNQNAVKFNQL 148
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQL 148
>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 605
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG + +G R ++L PT ELA+QV N R+ +K + +S V+ GG
Sbjct: 62 RL----TQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKH-LDVKSTVIFGGVGMNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ ++ GVD+L+ATPGR + L ++G L L
Sbjct: 117 QIDRIKRGVDILVATPGRLLDLQQQGFLDL 146
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 73 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQL 159
>gi|406596808|ref|YP_006747938.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406598056|ref|YP_006749186.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406374129|gb|AFS37384.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406375377|gb|AFS38632.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
Length = 483
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG + R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDVLIATPGR + L ++ ++ L
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQL 148
>gi|407685080|ref|YP_006800254.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
gi|407246691|gb|AFT75877.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
Length = 483
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 97/154 (62%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG + R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDVLIATPGR + L ++ ++ L
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQL 148
>gi|365122316|ref|ZP_09339220.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642816|gb|EHL82156.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
Length = 421
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 96/156 (61%), Gaps = 5/156 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L ++ ++ +L+ + ++ P+ IQA A P V++GK + Q+G+GKT A+ +P+IQ
Sbjct: 3 FENLKLTEPVLRALQDEGYITPTPIQAKAIPCVLDGKDLLGCAQTGTGKTAAFSIPIIQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + S R +IL PT ELA+Q+ N + S+ + V+ GG QK+Q
Sbjct: 63 LLAEA----GGNGRRSVRALILTPTRELAAQIGDNINAYSR-HTRLKHTVIFGGVSQKSQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
+E L++GVD+L+ATPGR + L+ + I+ L +R++
Sbjct: 118 VEALRKGVDILVATPGRLLDLVSQKIIDLQTIRFFV 153
>gi|387816135|ref|YP_005431630.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381341160|emb|CCG97207.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 443
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + T PR +IL PT ELA+QV + SK VP ++ VV GG +
Sbjct: 62 RLAE------NPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-VPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++G+DVL+ATPGR M L ++ ++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRF 144
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVDVL+ATPGR + L+++ +++ L
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLVQQNVVKFNQL 148
>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 393
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 95/154 (61%), Gaps = 8/154 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ +L + RPS IQ A PP++EGK ++ Q+GSGKT A++LP++Q+
Sbjct: 22 FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 82 LTE-------AGPAPGPRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
++++ +GVD+++AT GR + L+ + L L +L +
Sbjct: 134 VQSVSDGVDIIVATHGRLLDLVMQADLVLEHLTY 167
>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
[Acyrthosiphon pisum]
Length = 678
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 6/163 (3%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF+ G ++++L NF P+ +Q A P ++EG+ + + Q+GSGKT AY+LP
Sbjct: 251 SMTSFQSSGLRTILLDNLSNCNFSTPTPVQNYAIPIIIEGRDLMASAQTGSGKTAAYVLP 310
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG-- 383
++ L ++ Q + P VVI+APT EL SQ+ SK G R+ ++ GG
Sbjct: 311 ILHNLLKQPTQLIYDEHHCEPHVVIIAPTRELVSQISECVWKFSK-GTDIRNGLLYGGTS 369
Query: 384 -FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
+ QK+++ LQ GV +L ATPGR + +++GI+ +++++
Sbjct: 370 VYHQKSKI--LQRGVHILTATPGRLIDFVEKGIVTFSSVKFFV 410
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++ +++ + + PS IQA A P V+EGK + A Q+G+GKT ++LP+++R
Sbjct: 3 FTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S++ R +IL PT ELA+Q+ N S+ + RS VV GG + Q
Sbjct: 63 LSEG-----SRTRPNHIRALILTPTRELAAQIHENAVVYSRH-LRLRSSVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ NL++G D+L+ATPGR + L ++ ++ L
Sbjct: 117 MMNLRKGTDILVATPGRLLDLYQQNAVKFSQL 148
>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 599
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG + +G R ++L PT ELA+QV N R+ +K + +S V+ GG
Sbjct: 62 RL----TQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKH-LDVKSTVIFGGVGMNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ ++ GVD+L+ATPGR + L ++G L L
Sbjct: 117 QIDRIKRGVDILVATPGRLLDLQQQGFLDL 146
>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 458
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 95/154 (61%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + S+K +L P+ IQA+ P V++GK + + Q+G+GKT A++LP+I+
Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR E+ K ++L PT ELA+QV ++ ++ +K + RS V GG +
Sbjct: 85 LLRAED-----KPKRYQVHSLVLTPTRELAAQVEASAKAYTKY-LALRSDAVFGGVSIRP 138
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q++ LQ GVD+L+ATPGR + LI + +++ NL+
Sbjct: 139 QVKRLQGGVDILVATPGRLLDLINQKMIRFDNLK 172
>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
Length = 638
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 6/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAIRALILTPTRELALQIGESFDAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E L++GVD+LIA PGR LI +G + L NL +
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSNLEIF 151
>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 442
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG +D +++++ Q + PS IQA A PP+++G + A Q+G+GKT + LP++
Sbjct: 2 TFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + +++ R ++L PT ELA+QV + ++ K +P RS VV GG +
Sbjct: 62 RLASGK-----PASANQVRALVLTPTRELAAQVADSVQTYGKF-LPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ G D+L+ATPGR + L ++ ++ +L
Sbjct: 116 QMMRLRRGADILVATPGRLLDLYQQNAVRFDHL 148
>gi|374815172|ref|ZP_09718909.1| dead/deah box helicase domain-containing protein [Treponema
primitia ZAS-1]
Length = 649
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 11/156 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQ 328
F G SD ++E+L R+ F PS IQ++A P ++ + I+ ++G+GKT A+ +P+++
Sbjct: 9 FSSFGLSDDILEALTRKGFTAPSSIQSIALPRLLADQGHLIVKARTGTGKTAAFGIPLVE 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLRQ + +PR +IL PT ELA QV SL+ +P R V GG +T
Sbjct: 69 RLRQ---------SGHAPRALILTPTRELALQVAKEIASLASSAIP-RITAVYGGASIRT 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ +L+ G ++++ TPGR M L+ +L L + W+
Sbjct: 119 QILDLKRGTEIVVGTPGRVMDLMDRKVLDLSAVDWF 154
>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
Length = 462
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q +L P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+Q+ N R S+ + RS+VV GG
Sbjct: 62 RLVQNEPHAKGRRPV---RALILTPTRELAAQIGENVREYSRY-LDIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 118 QMMKLRSGVDVLVATPGRLLDLEHQNAVKL 147
>gi|24375277|ref|NP_719320.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
gi|24350080|gb|AAN56764.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
Length = 535
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K+ SG R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLAKGH-----KAKSGQTRALVLTPTRELAAQVGESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR + L+++ ++ L
Sbjct: 116 QINKLRHGVDVLVATPGRLLDLVQQNAVKFNQL 148
>gi|373115679|ref|ZP_09529847.1| hypothetical protein HMPREF0995_00683 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670129|gb|EHO35216.1| hypothetical protein HMPREF0995_00683 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 579
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 7/156 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG ++ ++ +L Q + +PS IQA A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFQELGLNEPILRALADQGYEQPSPIQAKAIPPALTGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + QG R +IL PT ELA Q+ + + K +P RS V+ GG Q
Sbjct: 62 QLSGRKAQGRPI------RALILTPTRELALQIQESFEAYGKY-LPLRSTVIFGGVGQAP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E L++GVD+L+ATPGR L + ++ L L +
Sbjct: 115 QVERLKKGVDILVATPGRLGDLYGQKLIDLSRLEIF 150
>gi|441477759|dbj|BAM75192.1| vasa-like gene-1, partial [Pinctada fucata]
Length = 476
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F+E G +D + ++K+ NF +P+ +Q + P ++ G+ + Q+GSGKT A+LLPV+
Sbjct: 27 KNFEEAGLADSFLTNVKKANFEKPTPVQKYSIPIIMAGRDLMACAQTGSGKTAAFLLPVL 86
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + L S S P+ +++APT ELA Q+ + R + G R +V+ GG
Sbjct: 87 TGMTKSGLNSSSFSQVQEPQALVIAPTRELAVQIYMDARKFAH-GTMLRPVVLYGGTSVG 145
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +++G ++L+ TPGR M +I +G + L +++
Sbjct: 146 YQIRQVEQGTNILVGTPGRLMDIIGKGKISLEKIKY 181
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQL 159
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 92/151 (60%), Gaps = 16/151 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ +++++ + PS IQA A P V+ GK + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVVTGG 383
R L+ S P R +IL PT ELA+QV +S+S G+ P +S VV GG
Sbjct: 62 R--------LNASAPIKPHRIRALILTPTRELAAQV---AQSVSTYGLHTPLKSAVVFGG 110
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
+ +Q+ L+ GVD+LIATPGR + L +G
Sbjct: 111 VKINSQIAQLRRGVDILIATPGRLLDLHGQG 141
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQL 159
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQL 159
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQL 148
>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 653
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Query: 282 SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ-GLSK 340
+++ +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q LR +E G+S
Sbjct: 132 AMREAGITKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQLLRHDEATLGMSM 191
Query: 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVL 400
PR V+L PT EL QV +S+S FRS +V+GG R K Q ++L VD++
Sbjct: 192 KPR-RPRAVVLCPTRELTEQVFRVAKSISHHAR-FRSTMVSGGTRLKPQEDSLNMPVDMV 249
Query: 401 IATPGRFMFLIKEGILQLINLRW 423
+ TPGR + IKEG + ++++
Sbjct: 250 VGTPGRILDHIKEGNIVYGDIKY 272
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQL 148
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQL 148
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQL 148
>gi|365844881|ref|ZP_09385691.1| putative ATP-dependent RNA helicase RhlE [Flavonifractor plautii
ATCC 29863]
gi|364562600|gb|EHM40436.1| putative ATP-dependent RNA helicase RhlE [Flavonifractor plautii
ATCC 29863]
Length = 579
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 7/156 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG ++ ++ +L Q + +PS IQA A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFQELGLNEPILRALADQGYEQPSPIQAKAIPPALTGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + QG R +IL PT ELA Q+ + + K +P RS V+ GG Q
Sbjct: 62 QLSGRKAQGRPI------RALILTPTRELALQIQESFEAYGKY-LPLRSTVIFGGVGQAP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E L+ GVD+L+ATPGR L + ++ L L +
Sbjct: 115 QVERLKNGVDILVATPGRLGDLYGQKLIDLSRLEIF 150
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 86/142 (60%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +++ R +IL PT ELA+Q+ +N + K +P RS VV GG +
Sbjct: 62 RLAAG-----TRAPGKQVRALILTPTRELAAQIGANIEAYGKH-LPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 116 QIAKLRGGVDILVATPGRLLDL 137
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG S ++ +++ Q + + IQ A P V++GK + Q+G+GKT + LPV+QR
Sbjct: 3 FKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ +G + PRV++L PT ELA+QV + R + +PFRS V+ GG Q
Sbjct: 63 LQSSHAEGQKR----HPRVLVLTPTRELAAQVHESVRDYGRF-LPFRSAVIFGGVSINPQ 117
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L +GVDV++ATPGR +
Sbjct: 118 KQKLIKGVDVVVATPGRLL 136
>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
HTCC2501]
gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
HTCC2501]
Length = 422
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 97/159 (61%), Gaps = 8/159 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++ ++ +LK++N+ RP+ IQA A P V+ + + + Q+G+GKT A+ +P++Q
Sbjct: 2 TFEQLELAEPILRALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
L ++ G G +I+ PT ELA Q+ SL+ G R+ V+ GG +Q
Sbjct: 62 HLERDRRYG---GKRGVVNALIVTPTRELAIQI---GESLTAYGHYTGIRNTVIFGGVKQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+E L+ GVD+L+ATPGR + L+ +GI+ L + ++
Sbjct: 116 GKQVEALRRGVDILVATPGRLLDLMDQGIISLSKVEYFV 154
>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|417824458|ref|ZP_12471049.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|419829955|ref|ZP_14353441.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419832928|ref|ZP_14356390.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|421354161|ref|ZP_15804493.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|422307246|ref|ZP_16394411.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|422917142|ref|ZP_16951470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|423819816|ref|ZP_17716074.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423853148|ref|ZP_17719866.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423880572|ref|ZP_17723468.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423997559|ref|ZP_17740818.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|424016266|ref|ZP_17756107.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|424019207|ref|ZP_17759003.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|424624749|ref|ZP_18063221.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424629251|ref|ZP_18067548.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424633282|ref|ZP_18071392.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424636373|ref|ZP_18074388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424640310|ref|ZP_18078200.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424648344|ref|ZP_18086014.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|443527168|ref|ZP_21093233.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|340048143|gb|EGR09066.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|341638535|gb|EGS63182.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|395953286|gb|EJH63899.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|408014062|gb|EKG51743.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408019673|gb|EKG57065.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408024809|gb|EKG61897.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408025337|gb|EKG62396.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408034628|gb|EKG71119.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408057083|gb|EKG91949.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408621540|gb|EKK94543.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408622563|gb|EKK95545.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408635749|gb|EKL07935.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408642909|gb|EKL14653.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408643117|gb|EKL14856.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408651572|gb|EKL22828.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408853491|gb|EKL93284.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|408861066|gb|EKM00665.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|408868702|gb|EKM08022.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|443454574|gb|ELT18376.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
manganoxydans SI85-9A1]
gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
manganoxydans SI85-9A1]
Length = 455
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ FK G +D ++ +L R + +P+ IQA A P V++G+ + Q+G+GKT A+ L
Sbjct: 1 MTHTDFKAFGLADTLLSALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
PVI L + + +P+V++L PT ELASQ+ N +S + G V+ GG
Sbjct: 61 PVIDAL----IAKGGRPAPKTPKVLVLTPTRELASQIAGNVKSYT-AGTKLTHHVIFGGV 115
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q+E ++ GVD++IATPGR + L+ + L L
Sbjct: 116 SIRPQIEAMRRGVDIVIATPGRLLDLLNQRALTL 149
>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|384424520|ref|YP_005633878.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 87/143 (60%), Gaps = 6/143 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLI 411
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLF 138
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 93/153 (60%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S +++++ +Q + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 TFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G +++ R +IL PT ELA+QV + + K + +S VV GG +
Sbjct: 62 RLSKGKPAGPNQA-----RALILTPTRELAAQVSDSVETYGKQ-LSLKSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + ++ L
Sbjct: 116 QMMRLRKGVDILVATPGRLLDLFNQNAIKFDQL 148
>gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227117872|ref|YP_002819768.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|360035301|ref|YP_004937064.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|379741202|ref|YP_005333171.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|417813420|ref|ZP_12460077.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|417816285|ref|ZP_12462917.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|418332432|ref|ZP_12943366.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|418337176|ref|ZP_12946074.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|418343691|ref|ZP_12950475.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|418348844|ref|ZP_12953578.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|418354675|ref|ZP_12957396.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|419825886|ref|ZP_14349390.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421316168|ref|ZP_15766739.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|421321010|ref|ZP_15771567.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|421325005|ref|ZP_15775531.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|421328665|ref|ZP_15779179.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|421331689|ref|ZP_15782169.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|421335261|ref|ZP_15785728.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|421339154|ref|ZP_15789589.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|421347136|ref|ZP_15797518.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|421351170|ref|ZP_15801535.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|422891511|ref|ZP_16933888.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|422902722|ref|ZP_16937717.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|422906599|ref|ZP_16941429.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|422913183|ref|ZP_16947702.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|422925663|ref|ZP_16958688.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|423144985|ref|ZP_17132594.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|423149664|ref|ZP_17136992.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|423153477|ref|ZP_17140671.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|423156291|ref|ZP_17143395.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|423160116|ref|ZP_17147084.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|423164838|ref|ZP_17151592.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|423730969|ref|ZP_17704283.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423756947|ref|ZP_17712305.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423892657|ref|ZP_17726340.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423927434|ref|ZP_17730956.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424001983|ref|ZP_17745069.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|424006141|ref|ZP_17749121.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|424024159|ref|ZP_17763819.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|424027008|ref|ZP_17766621.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|424586282|ref|ZP_18025871.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|424590898|ref|ZP_18030333.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|424594984|ref|ZP_18034317.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|424598849|ref|ZP_18038042.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|424601586|ref|ZP_18040738.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|424606581|ref|ZP_18045540.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|424610409|ref|ZP_18049263.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|424613216|ref|ZP_18052019.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|424617030|ref|ZP_18055717.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|424621981|ref|ZP_18060504.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|424644955|ref|ZP_18082703.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|424652635|ref|ZP_18090111.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|424656538|ref|ZP_18093836.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|440709660|ref|ZP_20890317.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443503491|ref|ZP_21070470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443507392|ref|ZP_21074176.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443511519|ref|ZP_21078174.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443515074|ref|ZP_21081601.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443518872|ref|ZP_21085282.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443523762|ref|ZP_21089989.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443531373|ref|ZP_21097388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443535149|ref|ZP_21101042.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443538716|ref|ZP_21104571.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|449056110|ref|ZP_21734778.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|340042011|gb|EGR02977.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|340042724|gb|EGR03689.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|341623276|gb|EGS48838.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|341623497|gb|EGS49030.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|341624424|gb|EGS49921.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|341639620|gb|EGS64237.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|341647245|gb|EGS71331.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|356419243|gb|EHH72801.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|356419329|gb|EHH72877.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|356424728|gb|EHH78127.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|356431693|gb|EHH84897.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|356432754|gb|EHH85951.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|356436105|gb|EHH89232.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|356441965|gb|EHH94841.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|356447583|gb|EHI00374.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|356448499|gb|EHI01266.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|356453077|gb|EHI05740.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|356454277|gb|EHI06926.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|356646455|gb|AET26510.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794712|gb|AFC58183.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|395920675|gb|EJH31497.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|395921125|gb|EJH31945.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|395923992|gb|EJH34803.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|395930171|gb|EJH40920.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|395932953|gb|EJH43696.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|395937122|gb|EJH47845.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|395944102|gb|EJH54776.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|395946196|gb|EJH56860.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|395951615|gb|EJH62229.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|395960173|gb|EJH70554.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|395961352|gb|EJH71682.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|395964650|gb|EJH74853.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|395972076|gb|EJH81692.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|395975568|gb|EJH85055.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|395977266|gb|EJH86681.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|408008183|gb|EKG46193.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|408014375|gb|EKG52018.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|408033764|gb|EKG70289.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|408034000|gb|EKG70511.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|408043335|gb|EKG79334.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|408044633|gb|EKG80531.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|408055276|gb|EKG90211.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|408609967|gb|EKK83343.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408625357|gb|EKK98270.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408638092|gb|EKL10073.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408656293|gb|EKL27390.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408657569|gb|EKL28648.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408846890|gb|EKL86969.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|408848066|gb|EKL88121.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|408871524|gb|EKM10761.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|408879899|gb|EKM18842.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|439975249|gb|ELP51385.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443432223|gb|ELS74754.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443436425|gb|ELS82548.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443439694|gb|ELS89392.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443443716|gb|ELS97002.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443447921|gb|ELT04563.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443450313|gb|ELT10590.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443458456|gb|ELT25852.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443461764|gb|ELT32822.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443466305|gb|ELT40964.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|448263933|gb|EMB01172.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|419836253|ref|ZP_14359696.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|421342720|ref|ZP_15793125.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|423735152|ref|ZP_17708360.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|424009084|ref|ZP_17752030.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
gi|395943237|gb|EJH53912.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|408630321|gb|EKL02932.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408858118|gb|EKL97797.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|408864734|gb|EKM04152.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 6/140 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q + L +GVDVL+ATPGR M
Sbjct: 116 QKQRLIDGVDVLVATPGRLM 135
>gi|417820813|ref|ZP_12467427.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|423952578|ref|ZP_17734292.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423982229|ref|ZP_17738074.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340038444|gb|EGQ99418.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|408660005|gb|EKL31036.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408665229|gb|EKL36048.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
Length = 397
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
gi|108879362|gb|EAT43587.1| AAEL004978-PA [Aedes aegypti]
Length = 638
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 90/149 (60%), Gaps = 6/149 (4%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + G DY+++++++ ++ +P+ IQ A P +++ + + Q+GSGKT A+LLP+I
Sbjct: 215 KSFGDSGLRDYLLQNIRKSHYTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPMI 274
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L L + G+P VVI+APT ELA Q+ + R + G + V GG +
Sbjct: 275 NTL----LNDNADMVPGNPFVVIIAPTRELALQIFNEARKFA-LGTVLKVCVAYGGTATR 329
Query: 388 TQLENLQEGVDVLIATPGRFM-FLIKEGI 415
Q++N+Q G +L+ATPGR + F+ K+ +
Sbjct: 330 HQMDNIQNGCHILVATPGRLLDFVDKQAV 358
>gi|389722095|ref|ZP_10188778.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
gi|388443987|gb|EIM00117.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
Length = 437
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +L Q + P+ IQA A P V+ G + A Q+G+GKT A+ LP++Q
Sbjct: 2 SFESLGLVPTLLRALAEQGYAEPTPIQAAAIPEVLAGHDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +T PRV+IL PT ELA+Q+ N R+ +K + RS V+ GG
Sbjct: 62 RLIDA-----PAATPRRPRVLILTPTRELAAQIDDNLRAYAKY-LHVRSAVIFGGVGMGP 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q+ L+ GVDV+IATPGR +
Sbjct: 116 QINALRRGVDVVIATPGRLI 135
>gi|365875010|ref|ZP_09414540.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis Ag1]
gi|442589346|ref|ZP_21008154.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis R26]
gi|365757122|gb|EHM99031.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis Ag1]
gi|442560956|gb|ELR78183.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis R26]
Length = 424
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L + + ++L+ + + P+ IQ A P ++ GK + Q+G+GKT A+ +P++Q
Sbjct: 2 NFNDLKLIEPISKALQEEGYKTPTSIQEQAIPKILAGKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + +K G + +IL PT ELA Q+ N + + +P ++MV+ GG +Q
Sbjct: 62 LLTE---RSENKHRKGVVKALILTPTRELAIQIEENFEAYGRH-LPLKTMVIFGGVKQGA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q E L+ GVD+L+ATPGR + I +GI+ L NL +
Sbjct: 118 QEEKLKRGVDILVATPGRLLDFIGQGIITLKNLDIFV 154
>gi|334366430|ref|ZP_08515362.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
Length = 473
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + ++ ++ + ++ P+ IQ A PP +EG+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ P + ++L PT ELA Q+ CR ++ R V+ GG Q+
Sbjct: 62 L-----LSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARY-TDLRHCVIFGGVNQR 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ LQ GVD+L+ATPGR + LI +G + L ++R++
Sbjct: 116 PQVDALQRGVDLLVATPGRLLDLIGQGYVSLSDIRFF 152
>gi|108761880|ref|YP_632259.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
1622]
Length = 501
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L D ++ ++K + + P+ IQ A P + G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K G+P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGDSFGTYGK-GLPLRHAVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L+ GVDVL+ATPGR + L+++G + L +L +
Sbjct: 117 QVQTLRNGVDVLVATPGRLLDLMEQGFVSLRSLEVF 152
>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
Length = 397
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
Length = 397
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
Length = 397
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
Length = 398
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|54302911|ref|YP_132904.1| ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9]
gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
SS9]
Length = 471
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 87/152 (57%), Gaps = 20/152 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++E++ +Q + PS IQA A P V+EGK + A Q+G+GKT A+ LPV++
Sbjct: 8 SFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLE 67
Query: 329 RLRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
RL S PRV ++L PT ELA+QV + +L +P S VV
Sbjct: 68 RL------------SNGPRVKPNQVRALVLTPTRELAAQVAESV-ALYAKNLPLSSAVVF 114
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
GG + Q+ L++G DVL+ATPGR + L +
Sbjct: 115 GGVKINPQMMRLRQGADVLVATPGRLLDLYNQ 146
>gi|422922704|ref|ZP_16955883.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
gi|341645192|gb|EGS69342.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
Length = 398
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAVQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 466
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 4/155 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + + PS IQA A P V+ G+ + A Q+G+GKT + LP++QR
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + +K +S + R +IL PT ELA+Q+ + K + SMVV GG + Q
Sbjct: 68 LSSSK---GNKVSSNNVRALILTPTRELAAQISESIEVYGKY-LNLHSMVVFGGVKINPQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
+ L++GVDVL+ATPGR + L + ++ L +
Sbjct: 124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVF 158
>gi|350571452|ref|ZP_08939778.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349792116|gb|EGZ45981.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 441
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +LK + + P+ IQA A P +EG+ + Q+GSGKT A+LLP +QR
Sbjct: 5 FSDLLHDKNILSALKTEGYETPTPIQAQALPAALEGRDIMAGAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ + PR ++LAPT ELA+QV N ++ +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKSGKGPRALVLAPTRELAAQVEKNAQAYAKNMKWFRTVTIVGGSSFGQQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L + VD+++ATPGR M L+ G + L
Sbjct: 120 IRALSKPVDLVVATPGRLMDLMDSGKVDFDRL 151
>gi|429887177|ref|ZP_19368702.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
gi|429225829|gb|EKY32027.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
Length = 398
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAVQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|91179150|gb|ABE27759.1| vasa [Azumapecten farreri]
Length = 801
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF+E G D + +L + +F +P+ +Q + P V+ G+ + Q+GSGKT A+LLP
Sbjct: 350 SIKSFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLP 409
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V+ + + L G + S P+ +++APT ELA Q+ ++ R S G R +V+ GG
Sbjct: 410 VLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSH-GTMLRPVVLYGGTS 468
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
QL+ ++ G +++ TPGR + +I +G + L L++
Sbjct: 469 VGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKY 506
>gi|388602126|ref|ZP_10160522.1| ATP-dependent RNA helicase [Vibrio campbellii DS40M4]
Length = 417
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++++L N + P+ +Q + PPV+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q K+ +G+P+ +IL PT ELA QV+ N + + + V GG
Sbjct: 64 SVQQ-------KTRNGAPQALILVPTRELAQQVMDNLTQYA-ANTDLKIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM--------FLIKEGILQL 418
Q + L+EG D+LIATPGR + + K GIL L
Sbjct: 116 QKKKLEEGADILIATPGRLLDHLFNGNVIIAKTGILVL 153
>gi|333909234|ref|YP_004482820.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333479240|gb|AEF55901.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 457
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ Q + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTKLGLSAPILKAIEEQGYTEPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L L + S R ++L PT ELA+QV + ++ + +P +S VV GG +
Sbjct: 62 KLSAGPL-----AKSNQVRALVLTPTRELAAQVAESVKNYGQH-LPLKSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ G DVLIATPGR + L + L+ L
Sbjct: 116 QMMALRRGADVLIATPGRLLDLYNQNALKFDQL 148
>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 506
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 6/151 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 18 TFQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 77
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ + G+++ R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 78 LLNEQPPKPGMARRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 132
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
TQ LQ+G D+LIATPGR + L+ + + L
Sbjct: 133 TQERALQQGADILIATPGRLLDLMNQKRIDL 163
>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
Length = 397
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVDQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
Length = 480
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 97/153 (63%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V+EGK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G K ++ + R +IL PT ELA+QV + + S+ +P ++ VV GG
Sbjct: 62 RL----MSG-PKVSANNVRALILTPTRELAAQVEESICAFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDVLIATPGR + L ++ ++ L
Sbjct: 116 QMIKLRKGVDVLIATPGRLLDLYQQNAVKFSQL 148
>gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
Length = 421
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 90/163 (55%), Gaps = 16/163 (9%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F +F +LG ++++L N + P+ +Q + PPV+EGK + A Q+G+GKT A+
Sbjct: 3 FIMSVNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFG 62
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
LP+IQ ++Q K +G+P+ +IL PT ELA QV+ N + + + V GG
Sbjct: 63 LPIIQSVQQ-------KKRNGAPQALILVPTRELAQQVMDNLTQYA-ANTDLKIVCVYGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM--------FLIKEGILQL 418
Q + L+EG D+LIATPGR + + K GIL L
Sbjct: 115 TSIGVQKKKLEEGADILIATPGRLLDHLFNGNVIIAKTGILVL 157
>gi|410862930|ref|YP_006978164.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
gi|410820192|gb|AFV86809.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
Length = 480
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 97/153 (63%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V+EGK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G K ++ + R +IL PT ELA+QV + + S+ +P ++ VV GG
Sbjct: 62 RL----MSG-PKVSANNVRALILTPTRELAAQVEESICAFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDVLIATPGR + L ++ ++ L
Sbjct: 116 QMIKLRKGVDVLIATPGRLLDLYQQNAVKFSQL 148
>gi|390945687|ref|YP_006409447.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390422256|gb|AFL76762.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 473
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 7/157 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + ++ ++ + ++ P+ IQ A PP +EG+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ P + ++L PT ELA Q+ CR ++ R V+ GG Q+
Sbjct: 62 L-----LSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARY-TDLRHCVIFGGVNQR 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ LQ G+D+L+ATPGR + LI +G + L ++R++
Sbjct: 116 PQVDALQRGIDLLVATPGRLLDLIGQGYVSLSDIRFF 152
>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
Length = 745
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G D ++++K+ N+ RP+ +Q + P V+ G+ + Q+GSGKT A+LLPV+
Sbjct: 299 NFDDAGLYDTFLKNVKKSNYDRPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLT 358
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L G S S P+ +++APT ELA Q+ ++ + + G R +V+ GG
Sbjct: 359 GMMNNGLTGSSFSVVQEPQALVVAPTRELAVQIFTDAKRFTH-GTMLRPVVLYGGTSLGH 417
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
QL N+++G +++ TPGR + +I +G + L L++
Sbjct: 418 QLRNVEQGAHIVVGTPGRLIDVIGKGKVSLEKLKY 452
>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ ++K P++IQ + P +++ ++ +L +GSGKTLAY+LP++Q
Sbjct: 117 SFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQ 176
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR++E PR V+L PT EL+ QV +S+ FRS +V+GG R +
Sbjct: 177 LLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHA-RFRSTMVSGGGRMRP 235
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q ++L +D+++ TPGR + I++G + ++++
Sbjct: 236 QEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKY 270
>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
MED217]
gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
MED217]
Length = 442
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 96/155 (61%), Gaps = 4/155 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG D ++++L + + P+ IQ A P +++GK + + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKELGLIDPILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + G K + +I+ PT ELA Q+ N + SK +S V+ GG +Q +
Sbjct: 62 QIYDKVGSGKGKR---KLKALIVTPTRELAIQIEDNVKEYSKY-TGIQSTVIFGGVKQAS 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ +++GVDVL ATPGR + L+K+G + L + +
Sbjct: 118 QVQAMRKGVDVLTATPGRLLDLVKQGFIDLGTIEY 152
>gi|451971488|ref|ZP_21924707.1| ATP-dependent RNA helicase [Vibrio alginolyticus E0666]
gi|451932641|gb|EMD80316.1| ATP-dependent RNA helicase [Vibrio alginolyticus E0666]
Length = 522
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 89/152 (58%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S+ + R +IL PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----SRVRANQVRALILTPTRELAAQVQENVFMYSRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MQRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
Length = 426
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L+ + + PS IQ A P V+ G+ + A Q+G+GKT + LP+++R
Sbjct: 17 FDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLER 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G + R ++L PT ELA+QVL++ R SK + S VV GG + Q
Sbjct: 77 LNHGARPGRLQI-----RALVLTPTRELAAQVLASVREYSKY-LQLTSDVVFGGVKINPQ 130
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ LQ+GVDVL+ATPGR + L+++G ++
Sbjct: 131 IQRLQKGVDVLVATPGRLLDLLQQGAVRF 159
>gi|410666269|ref|YP_006918640.1| DEAD/DEAH box helicase [Simiduia agarivorans SA1 = DSM 21679]
gi|409028626|gb|AFV00911.1| DEAD/DEAH box helicase [Simiduia agarivorans SA1 = DSM 21679]
Length = 434
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 88/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 4 TFDQLGLCAPILKAVAEQGYTTPSPIQAQAIPAVLKGQDVMAAAQTGTGKTAGFTLPILE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R LQ + ++ S +V++L PT ELA+Q+ N + L +P RS VV GG
Sbjct: 64 R-----LQSMQRAASNHVKVLVLTPTRELAAQIEDNVK-LYSAHLPVRSTVVFGGVGINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L++GV++L+ATPGR + L
Sbjct: 118 QMMRLRKGVEILVATPGRLLDL 139
>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
bacterium]
Length = 434
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++++K+Q + +PS IQ + P V++GK + A Q+G+GKT + LP++Q
Sbjct: 3 FSKLGLSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + S R +IL PT ELA+QV + + K +P +S VV GG + Q
Sbjct: 63 LSKGK-----PTNSNQVRTLILTPTRELAAQVQDSVATYGKH-LPLKSTVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L+ GVD+L+ATPGR + L + ++ L
Sbjct: 117 MKKLRGGVDILVATPGRLLDLYSQNAVKFDQL 148
>gi|350426043|ref|XP_003494315.1| PREDICTED: ATP-dependent RNA helicase rhlE-like [Bombus impatiens]
Length = 415
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 96/154 (62%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++++Q+F+ P+ IQ A P ++ G + + Q+G+GKT +++LP++Q
Sbjct: 2 SFDTLGLTTEILSAIQQQHFVSPTPIQQQAIPLILAGHDVMASAQTGTGKTASFVLPILQ 61
Query: 329 RLR--QEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+L + +L G R+ VILAPT ELA+Q+ N R S+ +P RS+VV GG
Sbjct: 62 QLSLIKAKLDKNKVIQKGKRRLYSVILAPTRELAAQIGENIRDYSR-DLPIRSLVVFGGV 120
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L+++ + L
Sbjct: 121 SINPQMMKLRGGVDILVATPGRLLDLVQKNAIDL 154
>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
Length = 506
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNQQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
TQ LQ+G D+LIATPGR + L+ + + L
Sbjct: 117 TQERALQQGADILIATPGRLLDLMNQKHVDL 147
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV+VLIATPGR + +++
Sbjct: 147 VDMNPQMAELRRGVEVLIATPGRLLDHVQQ 176
>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 429
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D +++++K Q + PS IQA A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ R ++L PT ELA+QV ++ + K +P RS VV GG +
Sbjct: 62 LLEKG-----NRPKPNQVRALVLTPTRELAAQVHASVATYGK-NMPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q++ L++GVDVL+ATPGR + L +
Sbjct: 116 QMQILRQGVDVLVATPGRLIDLYNQ 140
>gi|121591566|ref|ZP_01678824.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121546580|gb|EAX56777.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
Length = 147
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFEQLKLIPPILKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ + + RS V+ GG QK
Sbjct: 62 LLSAQQRRPSGKRVI---RSLILTPTRELAIQISDNFKAYGRF-LNLRSAVIVGGVSQKA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L++G+D+LIATPGR + L+ +G L
Sbjct: 118 QEQALEQGMDILIATPGRLIDLMNQGFADL 147
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV+VLIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEVLIATPGRLL 149
>gi|118602178|ref|YP_903393.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567117|gb|ABL01922.1| DEAD/DEAH box helicase domain protein [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 434
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 88/139 (63%), Gaps = 6/139 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++++++Q + PS IQA A P ++EGK + A Q+G+GKT ++LP++
Sbjct: 3 FSKLGLSDSILKAIEQQGYREPSLIQAQAIPAILEGKDVMAAAQTGTGKTAGFILPIL-- 60
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E L S R++IL PT ELA+QV S+ ++ + F+S VV GG + Q
Sbjct: 61 ---EILSKCSPIKFNQVRMLILTPTRELAAQV-SDSVTIYGKYLSFKSSVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L++GVD+L+ATPGR +
Sbjct: 117 MRKLRDGVDILVATPGRLL 135
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLVQNEPHAKGRRPI---RALILTPTRELAAQVGENVREYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L + L+L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNALKL 147
>gi|444425719|ref|ZP_21221154.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241063|gb|ELU52593.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 417
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 89/158 (56%), Gaps = 16/158 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++++L N + P+ +Q + PPV+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQQLVDTLSGMNIVSPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q K +G+P+ +IL PT ELA QV+ N + + + V GG
Sbjct: 64 SVQQ-------KKRNGAPQALILVPTRELAQQVMDNLTQYA-ANTDLKIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM--------FLIKEGILQL 418
Q + L+EG D+LIATPGR + + K GIL L
Sbjct: 116 QKKKLEEGADILIATPGRLLDHLFNGNVIIAKTGILVL 153
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++E++ ++ + +PS IQ A P V++GK + A Q+G+GKT + LP+
Sbjct: 3 FSKLGLSDSILEAVTKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPI--- 59
Query: 330 LRQEELQGLSKST---SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
LQ LSK T S R +IL PT ELA+QV ++ K +P +S VV GG +
Sbjct: 60 -----LQILSKGTPAKSNQVRTLILTPTRELAAQVNASVIDYGKQ-LPLKSTVVFGGVKI 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+L+ATPGR + L + ++ L
Sbjct: 114 NPQMQKLRGGVDILVATPGRLLDLYSQNAVKFDQL 148
>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
Length = 758
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S K+F E G + +E++++ + +P+ +Q + P V+ G+ + Q+GSGKT A+LLP
Sbjct: 308 SIKNFDEAGLYEKFLENVRKAQYEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLP 367
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V+ + + + G S S P+ +++APT ELA Q+ + R + G R++V+ GG
Sbjct: 368 VLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAH-GTMLRAVVLYGGTS 426
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
QL +++G +L+ TPGR + +I +G + L L++
Sbjct: 427 VGYQLRQVEQGTHILVGTPGRLIDIIGKGKISLSKLKY 464
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV+VLIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEVLIATPGRLL 149
>gi|345863070|ref|ZP_08815283.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125953|gb|EGW55820.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 456
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++E++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++R
Sbjct: 3 FASLGLSAPLLEAVAEQGYKTPSPIQAQAIPAVIKGRDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ ++ + R +IL PT ELA QV + + K +P RS VV GG + Q
Sbjct: 63 LSKD-----GRAQANQVRSLILTPTRELAVQVGESVATYGKH-LPLRSTVVYGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L+ GVDVL+ATPGR + L
Sbjct: 117 MMKLRRGVDVLVATPGRLLDL 137
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTANEPQKGRRPV----RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 117 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 146
>gi|354584019|ref|ZP_09002916.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353197281|gb|EHB62774.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 490
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 6/151 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFQDLNISPIILKALAKENYKTPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNEQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
TQ LQ+G D+LIATPGR + LI + + L
Sbjct: 117 TQERALQQGADILIATPGRLIDLINQKHVDL 147
>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 598
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + +++++ + + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ +K R ++L PT ELA+QV + RS +K + S V+ GG K
Sbjct: 62 RLSQGQVP-RNKFGGKGIRALVLTPTRELAAQVEESVRSYAKY-LDINSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ +++GVD+L+ATPGR + L ++G + L
Sbjct: 120 QIDRIKKGVDILVATPGRLLDLQQQGFMDL 149
>gi|392307103|ref|ZP_10269637.1| ATP-dependent RNA helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 465
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++S+ + + P+ IQ P V+ G+ + A Q+G+GKT A+ LP+I+
Sbjct: 2 TFSDLGLSPSIVQSITDKGYTTPTAIQEKGIPAVLSGQDVMAAAQTGTGKTAAFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +E+ + S ++LAPT ELA Q+ N + S+ G RS VV GG +
Sbjct: 62 QLLKED-----RPRSNQALALVLAPTRELALQIAENVEAYSQ-GTRLRSAVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+LIATPGR + L + ++ LR
Sbjct: 116 QMIQLRKGVDILIATPGRLLDLYSQNAVKFNQLR 149
>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
SL3/3]
Length = 641
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAVRALILTPTRELALQIGESFEAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E L++GVD+LIA PGR LI +G + L L +
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIF 151
>gi|393777345|ref|ZP_10365637.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
gi|392715686|gb|EIZ03268.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
Length = 516
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 9/156 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVTELGYTVPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
R L G + + +G+ PR ++L PT ELA+QV + R K +P RSMV+ GG
Sbjct: 62 R-----LSGTAAAQAGNRRLPRALVLTPTRELAAQVEESVRDYGKY-LPLRSMVMFGGVG 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L++GVD+++ATPGR + + + L N+
Sbjct: 116 INPQVDLLRKGVDIVVATPGRLLDHAGQRTIDLSNI 151
>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
Length = 438
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD ++ ++ ++ + PS IQA A P V+E K + + Q+G+GKT + LP++Q
Sbjct: 2 SFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+ L K R +IL PT ELA+QV +N + S + RS V+ GG +
Sbjct: 62 LLSQQP--PLRKRPI---RALILTPTRELAAQVYANVKEYSTF-LDIRSTVIFGGVNARP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L + L L
Sbjct: 116 QIATLRNGVDILVATPGRLLDLHSQKALSL 145
>gi|153830178|ref|ZP_01982845.1| ATP-dependent RNA helicase RhlE, partial [Vibrio cholerae 623-39]
gi|148874357|gb|EDL72492.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
Length = 230
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVDQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDL 137
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + ++ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLSKGQ-----RAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQL 148
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L S S SP R +IL PT ELA QV N ++ S+ P RS VV GG
Sbjct: 78 LLAH------ASHSASPARHPVRALILTPTRELADQVAENVKAYSRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + +++ + L
Sbjct: 131 DMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNL 164
>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
M21/2]
gi|158446036|gb|EDP23039.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii M21/2]
Length = 641
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAVRALILTPTRELALQIGESFEAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E L++GVD+LIA PGR LI +G + L L +
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIF 151
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++ ++ Q + +P+ IQ A P V+ G+ + A Q+G+GKT A++LP+++R
Sbjct: 3 FSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L++ S S + P R ++L+PT ELA Q+ N ++ +K +P R+ V GG
Sbjct: 63 LKK--FANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKY-LPLRATTVFGGVNMDP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ GV++LIATPGR + I++ +QL
Sbjct: 120 QTQELRRGVEILIATPGRLLDHIQQKTVQL 149
>gi|398388657|ref|XP_003847790.1| hypothetical protein MYCGRDRAFT_97328 [Zymoseptoria tritici IPO323]
gi|339467663|gb|EGP82766.1| hypothetical protein MYCGRDRAFT_97328 [Zymoseptoria tritici IPO323]
Length = 544
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 22/172 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++E++K + RP+ IQ A P + G I Q+GSGKTLAYL+PV+
Sbjct: 104 SFEDAGMHPVILENIKLAGYERPTPIQCYAIPAALMGHDVIAISQTGSGKTLAYLIPVLS 163
Query: 329 RL--RQEELQG----LS------KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
L + ++L+G LS + P V+I+ PT ELA Q+ +CR L +R
Sbjct: 164 PLMGKGKKLRGPRPDLSLGYNPRNAVRAEPLVIIVVPTRELAIQIFDDCRRLC-----YR 218
Query: 377 SM----VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI-KEGILQLINLRW 423
SM V GG+ K+Q+E+L +G D+LIATPGR + L+ K +L + +++
Sbjct: 219 SMLRPCVAYGGYPMKSQIEDLGKGCDILIATPGRLVALMGKPEVLTMSRVKY 270
>gi|319783363|ref|YP_004142839.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 474
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++++ F P IQA A PP +EG+ Q+GSGKT A+ LP++ +
Sbjct: 18 FAALGITGALLKATHNAGFTEPKPIQAQAIPPQMEGRDIFGIAQTGSGKTAAFALPILSK 77
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + +K + R +ILAPT ELA Q+ + L+K G + +V GG + +Q
Sbjct: 78 I----IALGTKRRPKTARALILAPTRELAVQIEDTIKILAK-GAHVSTALVLGGVSRFSQ 132
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ + GVD+LIATPGR L++EG L L + +W
Sbjct: 133 VKKVAPGVDILIATPGRLTDLVREGDLMLADTKWL 167
>gi|337752121|ref|YP_004646283.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336303310|gb|AEI46413.1| DEAD/DEAH box helicase domain protein [Paenibacillus mucilaginosus
KNP414]
Length = 422
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +I++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFQQLELIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ C R V+ GG Q+
Sbjct: 62 LLSTQQGRPNGKRVI---RSLILTPTRELAIQISDNAKAYG-CFTNLRYGVIVGGVSQRP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L++G+D+LIATPGR + L+ +G + L
Sbjct: 118 QEQLLEQGMDILIATPGRLIDLMNQGFVDL 147
>gi|407701321|ref|YP_006826108.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250468|gb|AFT79653.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
Length = 483
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 18/159 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP------RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
RL SG P R +IL PT ELA+QV + + S+ +P ++ VV G
Sbjct: 62 RL-----------MSGQPVSGNNVRALILTPTRELAAQVEESISAFSEF-LPLKTAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
G Q+ L++GVDVLIATPGR + L ++ ++ L
Sbjct: 110 GVGINPQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQL 148
>gi|405965019|gb|EKC30448.1| Putative ATP-dependent RNA helicase DDX4 [Crassostrea gigas]
Length = 779
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S K+F E G + +E++++ + +P+ +Q + P V+ G+ + Q+GSGKT A+LLP
Sbjct: 329 SIKNFDEAGLYEKFLENVRKAQYEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLP 388
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V+ + + + G S S P+ +++APT ELA Q+ + R + G R++V+ GG
Sbjct: 389 VLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAH-GTMLRAVVLYGGTS 447
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
QL +++G +L+ TPGR + +I +G + L L++
Sbjct: 448 VGYQLRQVEQGTHILVGTPGRLIDIIGKGKISLSKLKY 485
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +++++++ F P+ IQ A P + G+ + + +G+GKT A++LP +Q
Sbjct: 9 SFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSLQ 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + PRV++L PT ELASQVL + R+LSK G ++ + GG +
Sbjct: 69 RI----ATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGR-IQTGTILGGMPYRQ 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QLE L+ VD+++ATPGR M ++ G L L
Sbjct: 124 QLEMLRRRVDLIVATPGRLMDHMERGRLDL 153
>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 516
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 8/151 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F ELG SD +E++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP +
Sbjct: 12 KQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSL 71
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL G +K G P ++++ PT ELA Q+ C +++ R + V GG
Sbjct: 72 DRL------GHAKGGQG-PLMLVVTPTRELAQQIGEVCTAIA-ASTHHRILTVVGGLSYT 123
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+LIATPGR + L+++G ++L
Sbjct: 124 PQINKLKHGVDILIATPGRLVDLMEQGAVRL 154
>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 519
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 258 YSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
++ G F SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+G
Sbjct: 59 FTGPGRFGVVMSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTG 118
Query: 318 KTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
KT + LP++QRL Q E + R +IL PT ELA+QV N R SK + RS
Sbjct: 119 KTAGFTLPLLQRLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRS 174
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+VV GG Q+ L+ GVD+L+ATPGR + L + + L
Sbjct: 175 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSL 215
>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 423
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++ +L RQ + P+ IQA A P V+ G + A Q+G+GKT + LP++
Sbjct: 2 TFSELGLCPEILNALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPIL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L+G ++ + + RV+IL PT ELA+QV + + K +P VV GG +
Sbjct: 61 ----EMLKGNERAKANTARVLILTPTRELAAQVGESVANYGK-DLPLSYAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L ++ ++ L
Sbjct: 116 QMMKLRKGVDILVATPGRLLDLYQQNAIRFPQL 148
>gi|379725028|ref|YP_005317159.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386727777|ref|YP_006194103.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|378573700|gb|AFC34010.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384094902|gb|AFH66338.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 422
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +I++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFQQLQLIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ C R V+ GG Q+
Sbjct: 62 LLSTQQGRPNGKRVI---RSLILTPTRELAIQISDNAKAYG-CFTNLRYGVIVGGVSQRP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L++G+D+LIATPGR + L+ +G + L
Sbjct: 118 QEQLLEQGMDILIATPGRLIDLMNQGFVDL 147
>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE, partial [Klebsiella sp. MS 92-3]
gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
Length = 509
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 258 YSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
++ G F SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+G
Sbjct: 49 FTGPGRFGVVMSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTG 108
Query: 318 KTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
KT + LP++QRL Q E + R +IL PT ELA+QV N R SK + RS
Sbjct: 109 KTAGFTLPLLQRLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRS 164
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+VV GG Q+ L+ GVD+L+ATPGR + L + + L
Sbjct: 165 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSL 205
>gi|372270358|ref|ZP_09506406.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 576
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ +L + PS IQA + PP++EG+ + Q+G+GKT A+ LP++Q
Sbjct: 10 NFGDLGLSTPILNALADVGYETPSPIQARSIPPLLEGQDLLGMAQTGTGKTAAFALPLLQ 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ +T+ P++++LAPT ELA QV + C SK R++ + GG +
Sbjct: 70 RI---------DTTATHPQLLVLAPTRELALQVATACEKYSKHLPGLRTLSIYGGQGYDS 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ G V+I TPGR M I+ G LQL L+
Sbjct: 121 QIRGLRRGAQVIIGTPGRVMDHIRRGTLQLDRLQ 154
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++ ++K + + P+ IQ A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLQETLLRAVKAEGYTTPTPIQQKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K +P R V+ GG Q
Sbjct: 62 RLSAKAPPGGARPV----RCLVLTPTRELAGQVGESFATYGK-NLPLRHTVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ LQ GVDVL+ATPGR + L+++G + L +L +
Sbjct: 117 QVQALQRGVDVLVATPGRLLDLMEQGCVSLRSLEVF 152
>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
Length = 419
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +IE+L N + P+ +Q + P V+EGK+ + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q++L +G+P+ ++L PT ELA QV N S R + V GG
Sbjct: 64 TVQQKKL-------NGTPQALVLVPTRELAQQVFDNLNQYS-AQTELRIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 116 QKRKLEEGADILIATPGRLL 135
>gi|451973073|ref|ZP_21926271.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus E0666]
gi|451931037|gb|EMD78733.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus E0666]
Length = 419
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +IE+L N + P+ +Q + P V+EGK+ + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q++L +G+P+ ++L PT ELA QV N S R + V GG
Sbjct: 64 TVQQKKL-------NGTPQALVLVPTRELAQQVFDNLNQYS-AQTELRIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 116 QKRKLEEGADILIATPGRLL 135
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + P+ IQ A P ++ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFSDLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
RL Q Q ++S PR ++L PT ELA+QV S+S G +P R++ + GG
Sbjct: 62 RLSQSGQQASARSP--QPRALVLTPTRELAAQV---GESVSAYGQYLPLRALQIFGGVGM 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + + +G L L
Sbjct: 117 GPQITALRRGVDILVATPGRLLDHVGQGNLDL 148
>gi|424820640|ref|ZP_18245678.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. venerealis NCTC 10354]
gi|342327419|gb|EGU23903.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. venerealis NCTC 10354]
Length = 298
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S ++E+LK N+ P+QIQ +A P +++GK + ++G+GKT A+ LP++++
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E T RV++L PT ELA+QV N +S +K +PF+++ V GG Q
Sbjct: 63 LSSKERNKKRPQT----RVLVLVPTRELANQVTQNIKSYAK-KLPFKTLPVFGGVSSYPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ L+ G+D+++ATPGR + L + L L
Sbjct: 118 IQALKSGIDIVVATPGRLLDLALQNALSL 146
>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 506
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNQQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
TQ LQ+G D+LIATPGR + L+ + + L
Sbjct: 117 TQERALQQGADILIATPGRLLDLMNQKHVDL 147
>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
12042]
Length = 424
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 96/155 (61%), Gaps = 6/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL ++++ +R + P++IQ A PPV+EG+ + Q+G+GKT A+ LP++ +
Sbjct: 3 FNELPIHPSILKNCQRMGYTTPTKIQQKAIPPVLEGRDLLGLAQTGTGKTAAFALPILDQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +G + + ++L PT ELA Q++ N + L G+P +++V+ GG +Q Q
Sbjct: 63 LMKQPQKG-----KRAIKALVLTPTRELAIQIVDNFQ-LYGQGLPLKTVVIFGGVKQGAQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ L++G D+LIATPGR + L+ + +L L + +
Sbjct: 117 VDQLKKGADILIATPGRLLDLVGQRLLDLSQVEIF 151
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG +I ++ ++ + P+ IQA + P ++EG+ + Q+G+GKT ++ LPV+Q
Sbjct: 2 SFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G +K +G R ++L PT ELA+QV + R + +P S V+ GG
Sbjct: 62 RLMES---GDAKPKAGKVRALVLTPTRELAAQVAESVRDYGQH-LPLSSFVIFGGVNINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L++GVD+L+ATPGR + + + + L
Sbjct: 118 QKQKLRKGVDILVATPGRLLDHVSQNTVDL 147
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 176
>gi|352093852|ref|ZP_08955023.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680192|gb|EHA63324.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 401
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 89/140 (63%), Gaps = 6/140 (4%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
M+++L+ + + PS IQ A P V+ G+ + A Q+G+GKT + LP+++RL G
Sbjct: 1 MLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLERLNHGARPGR 60
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
++ R ++L PT ELA+QVL++ R SK +P S VV GG + Q++ LQ+GVD
Sbjct: 61 AQI-----RALVLTPTRELAAQVLASVRDYSKH-LPLTSDVVFGGVKINPQIQRLQKGVD 114
Query: 399 VLIATPGRFMFLIKEGILQL 418
VL+ATPGR + L+++G ++
Sbjct: 115 VLVATPGRLLDLLQQGAVRF 134
>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 481
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNMRDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG + S S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLGQ---QGPAVS-SNRARVLVLVPTRELAEQVLQSFIDYGK-GLDLRFLAAYGGVSVNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D+++++L + PS IQ+M PP+++G + Q+G+GKT A+ LPV+ R
Sbjct: 10 FDELRLPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPVLAR 69
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + +G P+ ++L PT ELA QV + ++ F+ + + GG +TQ
Sbjct: 70 L---------DTKAGGPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYGGSDYRTQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
L LQ GV +++ TPGR M ++ G L L +L+
Sbjct: 121 LRQLQRGVHIIVGTPGRVMDHMRRGSLDLSSLK 153
>gi|452877593|ref|ZP_21954868.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
gi|452185681|gb|EME12699.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
Length = 447
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVDVL+ATPGR + L ++ +Q L+
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNAVQFARLQ 150
>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 447
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVDVL+ATPGR + L ++ +Q L+
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNAVQFARLQ 150
>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
gi|387870433|ref|YP_005801803.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
Length = 442
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++ + P+ IQ A P V+ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +ILAPT ELA QV + ++ SK VP RS + GG
Sbjct: 62 RLARH------ASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKY-VPLRSTCIYGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
K Q+++L+ G+++++ATPGR + +++ +QL
Sbjct: 115 VDMKPQIQDLRNGIEIVVATPGRLLDHVQQKTIQL 149
>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 506
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 8/151 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F ELG SD +E++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP +
Sbjct: 2 KQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL G +K G P ++++ PT ELA Q+ C +++ R + V GG
Sbjct: 62 DRL------GHAKGGQG-PLMLVVTPTRELAQQIGEVCTAIA-ASTHHRILTVVGGLSYT 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+LIATPGR + L+++G ++L
Sbjct: 114 PQINKLKHGVDILIATPGRLVDLMEQGAVRL 144
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 NFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 176
>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
SCRI1043]
gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
SCRI1043]
Length = 483
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E Q K R +IL PT ELA+Q+ N ++ SK +P RS+VV GG
Sbjct: 62 LLTSREAQNKGKGRR-PVRALILTPTRELAAQIDENVKAYSKY-LPLRSLVVFGGVSINP 119
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 120 QMMKLRGGVDILVATPGRLLDL 141
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 154
>gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99]
gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
Length = 442
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|392954107|ref|ZP_10319659.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
gi|391858006|gb|EIT68536.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
Length = 605
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 86/139 (61%), Gaps = 2/139 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++ ++ + + +P+ IQA A P +++G + A Q+G+GKT A+ LP++ R
Sbjct: 3 FTDLGLDEGLLRAVAAEGYTQPTPIQAQAIPVILQGGDLLAAAQTGTGKTAAFTLPLLHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q QG+S + P ++L PT ELA+QV + R+ +P ++ V+ GG Q
Sbjct: 63 LIQRRAQGVSGAPK-KPLALVLTPTRELAAQVAQSVRTYGGH-LPLKTTVIFGGVSINPQ 120
Query: 390 LENLQEGVDVLIATPGRFM 408
++ L+ GVD+L+ATPGR +
Sbjct: 121 IDVLRHGVDILVATPGRLL 139
>gi|385785555|ref|YP_005816664.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
Length = 442
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|427403839|ref|ZP_18894721.1| hypothetical protein HMPREF9710_04317 [Massilia timonae CCUG 45783]
gi|425717457|gb|EKU80416.1| hypothetical protein HMPREF9710_04317 [Massilia timonae CCUG 45783]
Length = 414
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L + P+ +Q A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDQIVRTLDALAYHTPTAVQEQAIPAVLAGRDVMAAAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G S + R +IL PT ELA QV + R+ ++ G+P R+MV GG
Sbjct: 62 RLAKSGTVG-----SNAVRALILVPTRELAEQVHESVRTYAE-GLPLRTMVAYGGVSINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDV++ATPGR + L ++ ++
Sbjct: 116 QMMALRKGVDVMVATPGRLLDLQRQNAVRF 145
>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum So ce56]
gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum So ce56]
Length = 478
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++ +++ + + P+ IQ A PP++EG + Q+G+GKT A+ LP++QR
Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q G RV++L PT ELA+QV + + K + R+ VV GG Q+ Q
Sbjct: 63 LAQS-----GGPRQGGLRVLVLTPTRELAAQVAESFTTYGK-NLGLRTAVVFGGVGQRPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGI 415
+E L+ GVDVL+ATPGR + L +GI
Sbjct: 117 MEALRRGVDVLVATPGRLLDLCSQGI 142
>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 467
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 92/154 (59%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + S++ +L P+ IQ + P V++GK + + Q+G+GKT A++LP+I+
Sbjct: 34 TFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 93
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR E+ K +IL PT ELA+QV +N + +K + RS V GG +
Sbjct: 94 LLRVED-----KPKRLQVHSLILTPTRELAAQVEANAKGYTKY-LGIRSDAVFGGVSIRP 147
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q++ LQ GVD+L+ATPGR + LI + ++ NL+
Sbjct: 148 QVKRLQGGVDILVATPGRLLDLINQKTIRFDNLK 181
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG +D ++ +L + P+ IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 14 SFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQ 73
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +Q G PR +IL PT EL +QV + ++ +K RS+++ GG
Sbjct: 74 RLLDNPMQ---TRKPGRPRCLILTPTRELTAQVEESVKAYAKY-TRIRSVLIFGGVSINP 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L++ VD+L+ATPGR + +++G + L + +
Sbjct: 130 QIQALRQPVDILVATPGRLLDHVQQGTVDLSGVEIF 165
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 154
>gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320]
Length = 465
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPIL-- 61
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
E+L ++ T G + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 62 ---EKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRY-LPIRSLVVFGGVSIN 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + + L
Sbjct: 118 PQMMKLRGGVDVLIATPGRLLDLEHQNAVDL 148
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 154
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 146 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 228
>gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|425067413|ref|ZP_18470529.1| hypothetical protein HMPREF1311_00567 [Proteus mirabilis WGLW6]
gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|404601244|gb|EKB01657.1| hypothetical protein HMPREF1311_00567 [Proteus mirabilis WGLW6]
Length = 465
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPIL-- 61
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
E+L ++ T G + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 62 ---EKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRY-LPIRSLVVFGGVSIN 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + + L
Sbjct: 118 PQMMKLRGGVDVLIATPGRLLDLEHQNAVDL 148
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 154
>gi|425073153|ref|ZP_18476259.1| hypothetical protein HMPREF1310_02594 [Proteus mirabilis WGLW4]
gi|404595790|gb|EKA96324.1| hypothetical protein HMPREF1310_02594 [Proteus mirabilis WGLW4]
Length = 465
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPIL-- 61
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
E+L ++ T G + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 62 ---EKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRY-LPIRSLVVFGGVSIN 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + + L
Sbjct: 118 PQMMKLRGGVDVLIATPGRLLDLEHQNAVDL 148
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|332286324|ref|YP_004418235.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 477
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG ++ ++ ++ + P+ IQA A P V++G + A Q+G+GKT + LP++
Sbjct: 6 TFASLGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG G PRV+IL PT EL +QV + R+ SK RSMV+ GG
Sbjct: 66 RLLQNPAQG---RKPGQPRVLILTPTRELTAQVEESVRTYSKH-TSIRSMVMFGGVNINP 121
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q+ L++ +D+L+ATPGR +
Sbjct: 122 QISALRKPLDILVATPGRLL 141
>gi|154496153|ref|ZP_02034849.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
29799]
gi|150274708|gb|EDN01772.1| DEAD/DEAH box helicase [Pseudoflavonifractor capillosus ATCC 29799]
Length = 636
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG + ++++L + +PS IQ A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + +G P R +IL PT ELA Q+ + + K +P RS V+ GG Q+
Sbjct: 62 RLGGD-------IPAGRPIRSLILTPTRELALQIQESFEAYGK-HLPLRSAVIFGGVGQQ 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L++GVD+L+ATPGR + L +G + L L +
Sbjct: 114 PQVDKLKKGVDILVATPGRLLDLQGQGFVDLSRLEIF 150
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|417857754|ref|ZP_12502811.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338823758|gb|EGP57725.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 491
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G D+L+ATPGR + LI + L + +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTY 152
>gi|346311637|ref|ZP_08853640.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
gi|345900700|gb|EGX70520.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
Length = 679
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 10/169 (5%)
Query: 259 SADGDFFSRKS--------FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+AD F S+ + F +LG SD ++ +++ + + +QAMA P V+ G+ +
Sbjct: 15 AADASFSSKSADAADELARFADLGLSDEVLAAVEDLGYEHATPVQAMAIPQVLAGRDILA 74
Query: 311 ADQSGSGKTLAYLLPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
A Q+G+GKT A+LLP + RL R + +G + S PR++I+ PT ELA Q+ C+ ++
Sbjct: 75 AAQTGTGKTAAFLLPTMSRLPRVKRARGRAMSVGCGPRMLIITPTRELAQQIDDVCKKVA 134
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ V GG Q L+ G D+L+ATPGR + LI +G L
Sbjct: 135 -ARTRHTAVTVVGGVSYNPQKSALKRGCDILVATPGRLVDLIDQGACML 182
>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428786062|ref|ZP_19003545.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
gi|426275457|gb|EKV53192.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
Length = 442
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTRLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++ +L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 18 FEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L STS SP R +IL PT ELA QV N ++ S+ P RS VV GG
Sbjct: 78 LLAH------ASTSASPARHPVRALILTPTRELADQVADNVKAYSRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + +++ + L
Sbjct: 131 DMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNL 164
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + K R +IL PT ELA+QV + S +P S VV GG + Q
Sbjct: 63 LSKGQ-----KLKFNQVRALILTPTRELAAQVHESVEKYS-VNLPLTSDVVFGGVKANPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L++GVDVL+ATPGR + L + ++ L
Sbjct: 117 MQRLRKGVDVLVATPGRLLDLANQNAIKFDQL 148
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 91/153 (59%), Gaps = 4/153 (2%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K FKE G ++E++ +L + IQA++FPP++EG+ + A Q+G+GKT A+ LP+
Sbjct: 3 KKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPL 62
Query: 327 IQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ R+ + S S + P R+++L PT ELA Q+ N + + G+P R+ ++ GG
Sbjct: 63 LNRMIPK--ASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAYAD-GLPLRTSLIYGGVD 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L G D++IATPGR + +++ + L
Sbjct: 120 FNAQKHELMRGADIVIATPGRLLDHVEQRTINL 152
>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris DX-1]
gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
DX-1]
Length = 473
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N+L P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL LQ K TS + RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 69 RL----LQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRH-IHLTATLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +L GVDVL+ATPGR + L++ L+L + +
Sbjct: 124 QVRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEF 158
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
gi|89517223|gb|EAS19880.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
Length = 425
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 95/159 (59%), Gaps = 9/159 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG + ++ +L+ Q + P+ IQA + P +++GK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPILQ 61
Query: 329 RLRQEELQGLSKSTSG--SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L S G S + +++ PT ELA Q+ N ++ +K R+ V+ GG +Q
Sbjct: 62 HLYN------SAPPKGRRSIKALVVTPTRELAIQIDENFKAYAKY-TDIRNTVIYGGVKQ 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ L+ G+DVL+ATPGR + LI +G + L ++ ++
Sbjct: 115 AQQVNRLKSGIDVLVATPGRLLDLINQGFITLKHIEYFV 153
>gi|421081610|ref|ZP_15542520.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
gi|401703699|gb|EJS93912.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
Length = 480
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q K P R +IL PT ELA+Q+ N ++ SK +P RS+VV GG
Sbjct: 62 LLTSREAQ--HKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LPLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDL 141
>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 545
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +++++K + + P+ IQA A P ++ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L GL++ PR +IL PT ELA QV + ++ ++ V R V GG R +
Sbjct: 62 IL------GLTRGNGHHPRALILTPTRELALQVGESIKAYARK-VSLRCTVAFGGVRIEP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ L+ G+D+L+ATPGR + L + L L ++ +
Sbjct: 115 QIARLERGIDILVATPGRLLDLASQEHLSLASIEF 149
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
Length = 522
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S+ + R +IL PT ELA+QV N + +P S VV GG + Q
Sbjct: 63 LSNG-----SRVRANQVRALILTPTRELAAQVQENVFMYGRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MQRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
Length = 522
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + R +IL PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRANQVRALILTPTRELAAQVQENVFMYSRH-LPLNSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MQRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385872484|gb|AFI91004.1| Putative ATP-dependent RNA helicase RhlE [Pectobacterium sp.
SCC3193]
Length = 476
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q K P R +IL PT ELA+Q+ N ++ SK +P RS+VV GG
Sbjct: 62 LLTSREAQ--HKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LPLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDL 141
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|340776541|ref|ZP_08696484.1| ATP-dependent RNA helicase [Acetobacter aceti NBRC 14818]
Length = 431
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++ +L + +++P+ IQA + P ++EG+ + Q+G+GKT +++LP++
Sbjct: 4 TFEDLALSPALLRALGEEGYVKPTPIQAQSIPLLLEGRDLLGMAQTGTGKTASFVLPLLH 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G RV++LAPT EL SQ+ S + + FR + GG Q
Sbjct: 64 RLAETP----RPAPKGGARVLVLAPTRELVSQIADGFESFGR-HLDFRVTTIFGGVSQFH 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+EGVDV++A PGR + LI++G+ L L
Sbjct: 119 QVNALKEGVDVIVAAPGRLLDLIEQGLCDLSEL 151
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 89 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 148
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 149 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 201
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 202 VDMNPQMAELRRGVEILIATPGRLL 226
>gi|418407317|ref|ZP_12980635.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358006461|gb|EHJ98785.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 492
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQADRPANRTT----RTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G DVL+ATPGR + LI + L + +
Sbjct: 118 QQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTY 152
>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 500
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 11 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 71 MLMKQADRPANRTT----RTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 125
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G DVL+ATPGR + LI + L + +
Sbjct: 126 QQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTY 160
>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
Length = 464
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 86/152 (56%), Gaps = 20/152 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++E++ +Q + PS IQA A P V+EGK + A Q+G+GKT + LPV++
Sbjct: 2 SFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLE 61
Query: 329 RLRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
RL S PRV ++L PT ELA+QV + +L +P S VV
Sbjct: 62 RL------------SNGPRVKPNQVRALVLTPTRELAAQVAESV-ALYAKNLPLSSAVVF 108
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
GG + Q+ L++G DVL+ATPGR + L +
Sbjct: 109 GGVKINPQMMRLRQGADVLVATPGRLLDLYNQ 140
>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
D16]
gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
D16]
Length = 628
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 9/157 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG ++ +LK + + +PS IQ A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFEDLGLCPQILAALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL +K SG P R +IL PT ELA Q+ + + + R V+ GG Q
Sbjct: 62 RLS-------NKPASGHPIRALILTPTRELAIQIGESFEHYGR-HLALRCAVIFGGVGQA 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E L +GVD+L+ATPGR L ++G + L +L +
Sbjct: 114 PQVEKLGKGVDILVATPGRLGDLYQQGFIHLNDLEIF 150
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|229523508|ref|ZP_04412913.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
gi|229337089|gb|EEO02106.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
Length = 396
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LR QG K R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLR----QGQRKK---RIRALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 113
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q + L +GVDVL+ATPGR M L
Sbjct: 114 QKQRLIDGVDVLVATPGRLMDL 135
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|407776571|ref|ZP_11123844.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
gi|407301862|gb|EKF20981.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
Length = 456
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++++ F P IQ A PP++EG+ + Q+GSGKT A+ +P++ +
Sbjct: 12 FAELGISGTLLKAANDAGFTVPKPIQDQAIPPMLEGRDVLGIAQTGSGKTAAFTMPILSK 71
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + L K+ R +IL PT ELA Q+ R LS + +V GG + +Q
Sbjct: 72 IMALGTKRLRKTA----RALILCPTRELAVQIDEVVRQLSHHA-HLSTALVLGGVSRGSQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
+ L +GVDV+IATPGR L++ G L L RW
Sbjct: 127 VRRLAQGVDVVIATPGRLTDLVRSGELSLAETRWL 161
>gi|444352450|ref|YP_007388594.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
gi|443903280|emb|CCG31054.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
Length = 446
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QE+ + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTQEQPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
Length = 641
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 5/143 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E G DY++ ++++ +L+P+ IQ A P +++ + + Q+GSGKT A+LLP+I
Sbjct: 218 SFNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPIIN 277
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L T G+P VV++APT ELA Q+ R ++ G + +V GG +
Sbjct: 278 TL----LNDNDDMTPGNPFVVVVAPTRELALQISEEARKFAR-GTILKVVVAYGGTATRH 332
Query: 389 QLENLQEGVDVLIATPGRFMFLI 411
Q++N+ G +L+ATPGR + +
Sbjct: 333 QIDNVNNGCHILVATPGRLLDFV 355
>gi|453074823|ref|ZP_21977613.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
gi|452763772|gb|EME22047.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
Length = 433
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 7/161 (4%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S SF ELG + +SL+R+N P IQ + P ++ G+ + +GSGKTLA+ L
Sbjct: 1 MSTPSFTELGLPATLAQSLRRENVTAPFPIQVLVVPDILAGRDVLGRGPTGSGKTLAFGL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++ RL + S G PR ++LAPT ELA+Q+ S + R TGG
Sbjct: 61 PMLVRLTGK------FSAPGRPRGLVLAPTRELATQI-ERALDESALALGLRLASATGGV 113
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
KTQ + L GVDVL+ATPGR LI +G L L ++ A
Sbjct: 114 PTKTQAQRLARGVDVLVATPGRAADLIAQGALDLGDVAVTA 154
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G S ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL S +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------SANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ GV++LIATPGR + +++ + L
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNL 165
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 87/148 (58%), Gaps = 12/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG Q E L+ GV++LIATPGR +
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLL 149
>gi|395761621|ref|ZP_10442290.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 456
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ + P+ IQ+ A P V+ G + Q+G+GKT + LPV+
Sbjct: 2 SFSSLGLSDAIVRAVTEHGYTVPTPIQSQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVLH 61
Query: 329 RLRQE-ELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL + ++ +TS P R +ILAPT ELA+QV + R+ SK S V+ GG
Sbjct: 62 RLSTDANGASITSTTSTRPIRALILAPTRELAAQVEESVRAYSKY-TKLNSTVIFGGVGI 120
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L+ GVD+L+ATPGR + + +G + L
Sbjct: 121 NPQIKQLKHGVDILVATPGRLLDHMGQGTVDL 152
>gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 428
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FK+L + +I +++ + P++IQ A P + G + Q+G+GKT AYLLPV+
Sbjct: 3 KTFKDLDLNKQLIMAVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ + Q + R ++LAPT EL Q+ L+K R + + GG K
Sbjct: 63 MKVKYAQGQNM--------RALVLAPTRELVMQIHEAAVGLAKY-TDLRMVALYGGLGPK 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
TQ+ENL++GVD++IATPGRFM L + G + + +L++
Sbjct: 114 TQMENLKKGVDIIIATPGRFMDLYRMGEIPVKSLQY 149
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 90/149 (60%), Gaps = 7/149 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ + +++R + +P+ +Q A P V+EG+ I A +G+GKT A+LLPV+
Sbjct: 4 FADLGLSEAALAAVERLGYDQPTPVQEQAIPHVLEGRDLIAAASTGTGKTAAFLLPVLSM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + +PRV++++PT ELA Q+ C +S+ F + V GG Q
Sbjct: 64 LPR------ARGRNRAPRVLVVSPTRELAQQIARTCMQISRKTGHF-TTTVFGGTPYGPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ L+ G DVLIATPGR L+K G++ L
Sbjct: 117 IKELRGGTDVLIATPGRLKDLMKRGVVDL 145
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 445
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 8/150 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + ++ + + P+ +Q A P +EG+ + A +G+GKT A+ LPVI+
Sbjct: 36 TFQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIE 95
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + + GSPR ++++PT ELA Q+ + C L+K G R + V GG K
Sbjct: 96 RIDRAK-------KPGSPRALVVSPTRELALQIDAACTQLAK-GSGLRVVTVVGGVPYKG 147
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL L GVD+L+ATPGR L++ G ++L
Sbjct: 148 QLSKLSRGVDILVATPGRLHDLMERGDVKL 177
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|409422582|ref|ZP_11259673.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
HYS]
Length = 443
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 95/154 (61%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L+R ++ P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAKLGLIEPLLRALERLSYNTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G +K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---TLEG-AKVASNSVRALVLVPTRELAEQVHANIREYAE-HLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++G+D+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGIDLLVATPGRLLDLFRQNAVKFNQLQ 150
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
2210633]
gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
parahaemolyticus RIMD 2210633]
Length = 421
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F +F +LG ++E+L N + P+ +Q + P V+EGK + A Q+G+GKT A+
Sbjct: 3 FIMSVNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFG 62
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
LP+IQ ++Q K +G+P +IL PT ELA QV N ++ R + V GG
Sbjct: 63 LPIIQAVQQ-------KKRNGTPHALILVPTRELAQQVFDNLTQYAEH-TDLRIVCVYGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 115 TSIGVQKNKLEEGADILIATPGRLL 139
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 12/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 31 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 91 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 143
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG Q E L+ GV++LIATPGR +
Sbjct: 144 FGGVDMNPQSEQLRRGVEILIATPGRLL 171
>gi|340347760|ref|ZP_08670864.1| ATP-dependent RNA helicase [Prevotella dentalis DSM 3688]
gi|433652636|ref|YP_007296490.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
gi|339608706|gb|EGQ13594.1| ATP-dependent RNA helicase [Prevotella dentalis DSM 3688]
gi|433303169|gb|AGB28984.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
Length = 440
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 12/159 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL S ++ +L +N+ +P+ IQ A P ++G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFQELNISAPILRALTDKNYEQPTPIQQQAIPYALDGEDVLGLAQTGTGKTAAFAIPIIQ 61
Query: 329 RLRQEEL---QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L Q +L +G+ + +IL PT ELA Q+ C + RS V+ GG
Sbjct: 62 HLDQPDLLRQRGI--------KALILTPTRELAIQI-QECVTDYSHYTRVRSCVIFGGVG 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q Q++ LQ GVD+LIATPGR + LI +GI+ L +R +
Sbjct: 113 QAPQVQQLQRGVDILIATPGRLLDLIGQGIISLSTIRHF 151
>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
Length = 688
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ G + ++ ++KR N+ RP+ +Q + P + + + Q+GSGKT A+LLPV+
Sbjct: 232 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 291
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L LQ S +PR +++ PT EL Q+ R S+ G R +V GG
Sbjct: 292 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSR-GTVVRPVVAYGGTSMNH 350
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +LQ G +LIATPGR M I G++ L ++ +
Sbjct: 351 QIRDLQRGCHILIATPGRLMDFINRGLVGLDHVEF 385
>gi|449146212|ref|ZP_21777003.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus CAIM 602]
gi|449078150|gb|EMB49093.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus CAIM 602]
Length = 398
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 3 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K +S+ V GG ++ Q
Sbjct: 63 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQAQ 116
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L +GVDVL+ATPGR M L
Sbjct: 117 KQRLIDGVDVLVATPGRLMDL 137
>gi|419954669|ref|ZP_14470805.1| ATP-dependent RNA helicase [Pseudomonas stutzeri TS44]
gi|387968533|gb|EIK52822.1| ATP-dependent RNA helicase [Pseudomonas stutzeri TS44]
Length = 439
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L++G+DVL+ATPGR + L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQ 141
>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
L2-6]
Length = 648
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 6/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L S +++++ + PS IQA A PPV+EG+ + Q+G+GKT A+ LP++
Sbjct: 2 TFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R L + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 R-----LSAAAPRRKGAVRALILTPTRELALQIGESFDAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E +++GVD+LIA PGR LI +G + L NL +
Sbjct: 116 QVEAIRKGVDILIACPGRLNDLIGQGHIDLSNLEVF 151
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++LG ++ ++ +L N+ P+ IQ A PP + G+ Q+G+GKT A+ LP++
Sbjct: 2 SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + QG K PR ++L+PT ELA Q+ + R + + S+ + GG Q
Sbjct: 62 RLIKNPRQG--KLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQ-NSLTIYGGVSQVP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L G DVLIATPGR L+++G + L + +
Sbjct: 119 QVKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVF 154
>gi|407789880|ref|ZP_11136978.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
gi|407205702|gb|EKE75670.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
Length = 462
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++++ Q + PS IQA A P V+EG+ + A Q+G+GKT + LP++
Sbjct: 5 TFADLGLSKALLDAVAEQGYEHPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLH 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L G SK R ++L PT ELA+QV + + K +P R VV GG +
Sbjct: 65 L-----LSGGSKVQGNQVRALVLTPTRELAAQVAESVNTYGKH-LPLRCQVVFGGVKINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ G DVL+ATPGR + L ++ ++ L
Sbjct: 119 QMMALRRGTDVLVATPGRLLDLYQQNAVRFNQL 151
>gi|418292806|ref|ZP_12904736.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064219|gb|EHY76962.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 441
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +Q A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQTEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K TS S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVTSNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++G+DVL+ATPGR + L ++ + L+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQ 150
>gi|422910505|ref|ZP_16945144.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|424660172|ref|ZP_18097419.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|341633423|gb|EGS58231.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|408050933|gb|EKG86058.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 397
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L Q + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLSQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q + L +GVDVL+ATPGR M
Sbjct: 116 QKQRLIDGVDVLVATPGRLM 135
>gi|258627528|ref|ZP_05722305.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
gi|258580110|gb|EEW05082.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
Length = 398
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 3 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K +S+ V GG ++ Q
Sbjct: 63 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQAQ 116
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L +GVDVL+ATPGR M L
Sbjct: 117 KQRLIDGVDVLVATPGRLMDL 137
>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 578
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVDVL+ATPGR + L ++ ++ L
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLEQQKAVKFNQL 148
>gi|119775819|ref|YP_928559.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
SB2B]
Length = 533
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++++L + + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + G + R +IL PT ELA+Q+ N + SK +P +S VV GG
Sbjct: 62 LLSQTQKAGPKQV-----RALILTPTRELAAQIADNITAYSKY-LPLKSTVVFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ G+D+L+ATPGR + L ++ + L
Sbjct: 116 QITTLRRGIDILVATPGRLLDLHQQNAVSFHGL 148
>gi|386019450|ref|YP_005937474.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 441
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++G+DVL+ATPGR + L ++ + L+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQ 150
>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 439
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|339492846|ref|YP_004713139.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800218|gb|AEJ04050.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 441
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++G+DVL+ATPGR + L ++ + L+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQ 150
>gi|262171576|ref|ZP_06039254.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
gi|261892652|gb|EEY38638.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
Length = 412
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 17 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K +S+ V GG ++ Q
Sbjct: 77 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQAQ 130
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L +GVDVL+ATPGR M L
Sbjct: 131 KQRLIDGVDVLVATPGRLMDL 151
>gi|357028767|ref|ZP_09090792.1| DEAD/DEAH box helicase domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
gi|355537467|gb|EHH06723.1| DEAD/DEAH box helicase domain-containing protein [Mesorhizobium
amorphae CCNWGS0123]
Length = 482
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++ F P IQ A PP +EG+ Q+GSGKT A+ LP++ +
Sbjct: 23 FAALGISGALLKATHAAGFTDPKPIQVQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 82
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + +K+T R +ILAPT ELA Q+ + L+K G + +V GG + +Q
Sbjct: 83 IIALGTKRRAKTT----RALILAPTRELAVQIEDTIKILAK-GAHVSTALVLGGVSRFSQ 137
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ + GVD+LIATPGR L++EG L L + +W
Sbjct: 138 VKKVAPGVDILIATPGRLTDLVREGDLILSDTKWL 172
>gi|409398007|ref|ZP_11248859.1| ATP-dependent RNA helicase [Pseudomonas sp. Chol1]
gi|409117513|gb|EKM93941.1| ATP-dependent RNA helicase [Pseudomonas sp. Chol1]
Length = 441
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L++G+DVL+ATPGR + L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQ 141
>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 438
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 4/155 (2%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
+F F LG S ++ ++K + +P+ IQ A P ++ GK + + Q+G+GKT ++
Sbjct: 3 YFIFMCFNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFV 62
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
LP++Q L Q + K R +ILAPT ELA+QV N R+ S+ + +S+VV GG
Sbjct: 63 LPILQHLSQTPVVVKGKKPV---RALILAPTRELAAQVGQNVRNYSQF-LRLKSLVVFGG 118
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L+++ + L
Sbjct: 119 VSINPQMMKLRGGVDILVATPGRLLDLVQQNAVSL 153
>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Length = 502
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 15 SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 75 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G D+L+ATPGR + LI + L + +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTY 164
>gi|73540223|ref|YP_294743.1| helicase [Ralstonia eutropha JMP134]
gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 506
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + Q K + R ++L PT ELA+QV + R+ K V RSMV+ GG
Sbjct: 62 LLSESAPQRQGKP---AVRALVLTPTRELAAQVEESVRNYGKY-VRLRSMVMFGGVGINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E L+ GV++++ATPGR + + + + L
Sbjct: 118 QIEQLRRGVEIVVATPGRLLDHVSQRTIDL 147
>gi|398845416|ref|ZP_10602451.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398253579|gb|EJN38701.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 439
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|372276956|ref|ZP_09512992.1| ATP-dependent RNA helicase SrmB [Pantoea sp. SL1_M5]
gi|390435903|ref|ZP_10224441.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans IG1]
Length = 442
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++I+ PT ELA QV + R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKH-THLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|440757280|ref|ZP_20936468.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans 299R]
gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|436428839|gb|ELP26488.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans 299R]
Length = 442
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++I+ PT ELA QV + R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILIVTPTRELAMQVADHARELAK-HTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>gi|386288691|ref|ZP_10065831.1| DEAD/DEAH box helicase [gamma proteobacterium BDW918]
gi|385278246|gb|EIF42218.1| DEAD/DEAH box helicase [gamma proteobacterium BDW918]
Length = 431
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ + + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILSAVTDKGYDTPSAIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E ++ + R +IL PT ELA+Q+ N K +P RS VV GG +
Sbjct: 62 LLSRGE-----RANANQARALILTPTRELAAQIGENVAMYGK-NLPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVD+L+ATPGR + L + ++ L
Sbjct: 116 QMIKLRRGVDILVATPGRLLDLYNQNAVKFNQL 148
>gi|417819886|ref|ZP_12466501.1| type III restriction enzyme, res subunit [Vibrio cholerae HE39]
gi|419828579|ref|ZP_14352070.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-1A2]
gi|419833504|ref|ZP_14356965.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A2]
gi|422920186|ref|ZP_16953516.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02A1]
gi|423810507|ref|ZP_17714558.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55C2]
gi|423844400|ref|ZP_17718291.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59A1]
gi|423875325|ref|ZP_17721963.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-60A1]
gi|423941316|ref|ZP_17732881.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-40]
gi|423973068|ref|ZP_17736426.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-46]
gi|423999805|ref|ZP_17742968.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02C1]
gi|424011635|ref|ZP_17754480.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55B2]
gi|424021465|ref|ZP_17761218.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59B1]
gi|424626875|ref|ZP_18065296.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A1]
gi|424627766|ref|ZP_18066099.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-51A1]
gi|424631566|ref|ZP_18069759.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-52A1]
gi|424638480|ref|ZP_18076447.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55A1]
gi|424642285|ref|ZP_18080127.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-56A1]
gi|424646892|ref|ZP_18084591.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-57A1]
gi|443525610|ref|ZP_21091768.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-78A1]
gi|340040744|gb|EGR01716.1| type III restriction enzyme, res subunit [Vibrio cholerae HE39]
gi|341631600|gb|EGS56484.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02A1]
gi|408007876|gb|EKG45912.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A1]
gi|408018722|gb|EKG56153.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55A1]
gi|408019538|gb|EKG56935.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-56A1]
gi|408026468|gb|EKG63474.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-52A1]
gi|408039187|gb|EKG75479.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-57A1]
gi|408060232|gb|EKG94934.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-51A1]
gi|408623652|gb|EKK96606.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-1A2]
gi|408637640|gb|EKL09668.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55C2]
gi|408645612|gb|EKL17251.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-60A1]
gi|408646687|gb|EKL18269.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59A1]
gi|408650828|gb|EKL22103.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A2]
gi|408662729|gb|EKL33635.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-40]
gi|408666670|gb|EKL37448.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-46]
gi|408843905|gb|EKL84044.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02C1]
gi|408862417|gb|EKM01933.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59B1]
gi|408867598|gb|EKM06956.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55B2]
gi|443456024|gb|ELT19733.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-78A1]
Length = 422
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 85/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT+A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTVAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--RETNSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|398964629|ref|ZP_10680406.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398148015|gb|EJM36703.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL++ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K + S R +IL PT ELA QV + R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVAANSARALILVPTRELAEQVHESVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVDVL+ATPGR + L+++ L+L L+
Sbjct: 117 QMMKLRGGVDVLVATPGRLIDLLRQNALKLDQLQ 150
>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 431
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S +++++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 TFASLGLSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +L + + RV+IL PT ELA+QV + + K +P RS VV GG +
Sbjct: 62 LLIPGKL-----AQANQARVLILTPTRELAAQVGESVATYGK-NLPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDVL+ATPGR + L + ++ +L
Sbjct: 116 QMMKLRQGVDVLVATPGRLLDLYNQRAVKFDHL 148
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 162 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 214
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GV++LIATPGR + +++ L
Sbjct: 215 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANL 249
>gi|335034320|ref|ZP_08527671.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|333794285|gb|EGL65631.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 502
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 15 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 75 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G D+L+ATPGR + LI + L + +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTY 164
>gi|423119382|ref|ZP_17107066.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
gi|376398561|gb|EHT11185.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
Length = 466
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q +L P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYLEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLIQKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVDVL+ATPGR + L
Sbjct: 118 QMMKLRSGVDVLVATPGRLLDL 139
>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
Length = 442
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++I+ PT ELA QV + R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILIVTPTRELAMQVADHARELAKH-THLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>gi|387789936|ref|YP_006255001.1| DNA/RNA helicase [Solitalea canadensis DSM 3403]
gi|379652769|gb|AFD05825.1| DNA/RNA helicase, superfamily II [Solitalea canadensis DSM 3403]
Length = 452
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F++ + ++ +++ + P+ IQ A P++ G + Q+G+GKT AY+LP++
Sbjct: 3 KTFEDFQFNRQILNAIEESGYTTPTLIQQKAITPILSGNDLMGIAQTGTGKTAAYVLPMV 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+L+ + PR +IL PT ELA QVL + L+K R + GG K
Sbjct: 63 MKLKYAQ--------GNDPRALILVPTRELALQVLEATQILAKY-TDLRITAIFGGLGPK 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
TQ+E ++ GVDVLIATPGRFM + +G L + +L ++
Sbjct: 114 TQIETIKNGVDVLIATPGRFMEIYLKGDLVVKHLNYFV 151
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G S ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------TANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ GV++LIATPGR + +++ + L
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNL 165
>gi|333915443|ref|YP_004489175.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333745643|gb|AEF90820.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 598
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + +++++ + + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ +K R ++L PT ELA+QV + RS +K + S V+ GG K
Sbjct: 62 RLSQGQVP-RNKFGGKGIRALVLTPTRELAAQVEESVRSYAKY-LDINSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ +++GVD+L+ATPGR + L ++G + L
Sbjct: 120 QIDRIKKGVDILVATPGRLLDLQQQGFMDL 149
>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 443
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|339489487|ref|YP_004704015.1| DEAD/DEAH box helicase [Pseudomonas putida S16]
gi|338840330|gb|AEJ15135.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida S16]
Length = 443
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L Q S S SP R +IL PT ELA QV N + + P RS VV GG
Sbjct: 78 LLQH------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + +++ + L
Sbjct: 131 DMSPQTAILRAGVEIVIATPGRLLDHVQQKTVNL 164
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 5/140 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG + ++ +++ Q + P+ IQA A P V+EGK + + Q+G+GKT + LP++
Sbjct: 2 SFETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +G + PR ++L PT ELA+QV + + K VP R+ VV GG + +
Sbjct: 62 KLASAG-RGQGRR---PPRALVLTPTRELAAQVAESIATYGKY-VPLRTAVVFGGVKIQP 116
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q+ LQ GVDVL+ATPGR +
Sbjct: 117 QIHKLQRGVDVLVATPGRLL 136
>gi|26991447|ref|NP_746872.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
Length = 443
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLTTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
17241]
gi|167668347|gb|EDS12477.1| DEAD/DEAH box helicase [Anaerotruncus colihominis DSM 17241]
Length = 439
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ +++ + ++ PS IQ A PP + G + Q+G+GKT A+ +P++QR
Sbjct: 21 FEELGLIQPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPILQR 80
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + Q S T R ++L PT ELA Q+ + +S + + RS VV GG Q Q
Sbjct: 81 L---DTQCASIKTPCVIRALVLTPTRELAIQIKDSFQSYGRY-MRLRSTVVFGGVPQTPQ 136
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
++ L+ GVD+L+ATPGR LI +GI+ L ++ +
Sbjct: 137 VDELRRGVDILVATPGRLNDLIGQGIIDLSSVSVFV 172
>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 483
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+R N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|399017820|ref|ZP_10720009.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398102587|gb|EJL92767.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 504
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 18 FEDFGLSPDILKALSAQGYIHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L STS SP R +IL PT ELA QV N ++ S+ P RS VV GG
Sbjct: 78 LLAH------ASTSMSPARHPVRALILTPTRELADQVADNVKAYSRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + +++ + L
Sbjct: 131 DMAPQTATLRGGVEIVIATPGRLLDHVQQKTVNL 164
>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 481
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +Q A P V+ GK + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG S +S RV++L PT ELA QVL + + K G+ R + GG
Sbjct: 62 RLVQ---QG-SAVSSNRARVLVLVPTRELAEQVLQSFVAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
Length = 770
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ G + ++ ++KR N+ RP+ +Q + P + + + Q+GSGKT A+LLPV+
Sbjct: 314 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 373
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L LQ S +PR +++ PT EL Q+ R S+ G R +V GG
Sbjct: 374 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSR-GTVVRPVVAYGGTSMNH 432
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +LQ G +LIATPGR M I G++ L ++ +
Sbjct: 433 QIRDLQRGCHILIATPGRLMDFINRGLVGLDHVEF 467
>gi|337269037|ref|YP_004613092.1| DEAD/DEAH box helicase domain-containing protein [Mesorhizobium
opportunistum WSM2075]
gi|336029347|gb|AEH88998.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 477
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++++ F P IQ A PP +EG+ Q+GSGKT A+ LP++ +
Sbjct: 22 FAALGVTGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 81
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + +K+T R +ILAPT ELA Q+ + L+K G + +V GG + +Q
Sbjct: 82 IIALGTKRRAKTT----RALILAPTRELAVQIEDTIKILAK-GAHVSTALVLGGVSRFSQ 136
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ + GVD+LIATPGR L++EG L L + +W
Sbjct: 137 VKKVAPGVDILIATPGRLTDLVREGDLILSDTKWL 171
>gi|397688314|ref|YP_006525633.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
gi|395809870|gb|AFN79275.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
Length = 441
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ +L+ ++ P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIEPLLRTLESLDYTTPTPVQAKAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QE + TS S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTQEG----APVTSNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVDVL+ATPGR + L ++ ++ ++
Sbjct: 117 QMMALRKGVDVLVATPGRLLDLYRQNAVKFAQVQ 150
>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
Length = 505
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+R N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 24 SFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 83
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 84 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 138
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 139 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 168
>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase [Pseudomonas putida F1]
gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
Length = 443
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|431804583|ref|YP_007231486.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430795348|gb|AGA75543.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 443
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|395445596|ref|YP_006385849.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
gi|421523851|ref|ZP_15970480.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|388559593|gb|AFK68734.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
gi|402752837|gb|EJX13342.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 443
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|365897083|ref|ZP_09435116.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
gi|365422196|emb|CCE07658.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
Length = 503
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N+ P+ IQA P +EG+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADALQRALKDENYQTPTPIQAQTIPLALEGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL LQ +K + RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RL----LQNRTKPQPKTARVLVLSPTRELSGQILDSFHAYGRH-IRLSSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ + GV+VL+ATPGR + LI+ L+L ++ +
Sbjct: 118 QVRTIMPGVEVLVATPGRLLDLIQGNALKLTSVEF 152
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ +Q + P+ IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + + G R ++L PT ELA+QV + + +P +S VV GG
Sbjct: 62 ILSKGK-----PAQRGQVRALVLTPTRELAAQVADSVETYGH-NLPLKSAVVFGGVSIVP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + L L
Sbjct: 116 QIAALKQGVDILVATPGRLLDLCNQRALSFSTL 148
>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
Length = 582
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S SF +L D ++ ++ + P+ IQ A PV+ G+ + A Q+G+GKT + L
Sbjct: 1 MSSISFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFAL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++QRL +G PR ++L PT ELA+QV + +L +P S+V+ GG
Sbjct: 61 PLLQRLAATHPH---PHPAGRPRGLVLTPTRELAAQVGESIATLG-THLPLTSLVIFGGV 116
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
R K Q+E L + VD+LIATPGR + L K+ + L
Sbjct: 117 RVKPQIEALTQRVDILIATPGRLIDLAKQEAVDL 150
>gi|386014015|ref|YP_005932292.1| DEAD/DEAH box helicase [Pseudomonas putida BIRD-1]
gi|397697647|ref|YP_006535530.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida BIRD-1]
gi|397334377|gb|AFO50736.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
Length = 443
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKF 146
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L+ GVDVL+ATPGR + L + ++ L
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQL 148
>gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|417322480|ref|ZP_12109014.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
Length = 417
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++E+L N + P+ +Q + P V+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q K +G+P +IL PT ELA QV N ++ R + V GG
Sbjct: 64 AVQQ-------KKRNGTPHALILVPTRELAQQVFDNLTQYAEH-TDLRIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 116 QKNKLEEGADILIATPGRLL 135
>gi|433659959|ref|YP_007300818.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|432511346|gb|AGB12163.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 417
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++E+L N + P+ +Q + P V+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q K +G+P +IL PT ELA QV N ++ R + V GG
Sbjct: 64 AVQQ-------KKRNGTPHALILVPTRELAQQVFDNLTQYAEH-TDLRIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 116 QKNKLEEGADILIATPGRLL 135
>gi|418530871|ref|ZP_13096791.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
gi|371451950|gb|EHN64982.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
Length = 609
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N RS +K + S V+ GG K
Sbjct: 62 RLANGTAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRSYAKY-LDITSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +++GVDVL+ATPGR + L +G + L
Sbjct: 120 QIARIEKGVDVLVATPGRLLDLAGQGFMDL 149
>gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
Length = 417
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++E+L N + P+ +Q + P V+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q K +G+P +IL PT ELA QV N ++ R + V GG
Sbjct: 64 AVQQ-------KKRNGTPHALILVPTRELAQQVFDNLTQYAEH-TDLRIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 116 QKNKLEEGADILIATPGRLL 135
>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
NSW150]
Length = 421
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG + +++S+ + PS IQ A P ++ GK + + Q+G+GKT +++LP++Q
Sbjct: 2 SFKSLGLIEPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ S R +IL PT ELASQV N + + FRS VV GG +
Sbjct: 62 MLSTK-----PRANSNRTRTLILTPTRELASQVHENIIQYGRY-LSFRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GV++L+ATPGR + L + +Q
Sbjct: 116 QMMKLRSGVEILVATPGRLLDLYNQRAIQF 145
>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
KT71]
Length = 604
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL +++++L + PS IQ M PP++EGK + Q+G+GKT A+ LP++
Sbjct: 9 SFDELQLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILA 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + P+ ++LAPT ELA QV + ++ F+ + + GG +T
Sbjct: 69 RL---------DAKLAKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRT 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL LQ GV V++ TPGR M ++ G L L L+
Sbjct: 120 QLRQLQRGVHVIVGTPGRVMDHMRRGSLDLSALK 153
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL S +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------SANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ GV++LIATPGR + +++ + L
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNL 165
>gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
Length = 435
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + ++ + + P+QIQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 40 FSQLGLSDVLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPILEK 99
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K + + V GG ++ Q
Sbjct: 100 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGKA-TGLKGLAVFGGVDEQAQ 153
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L EGVDVL+ATPGR M
Sbjct: 154 KQRLIEGVDVLVATPGRLM 172
>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
2-40]
gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 516
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG + +++ Q + P+ IQA A PPV+EG+ + A Q+G+GKT + LP+++
Sbjct: 20 FAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPILEI 79
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E ++ K R ++L PT ELA+QV N K +P +S +V GG + Q
Sbjct: 80 L-AEGIENGRKVKPNQARALVLTPTRELAAQVGENVALYGKY-LPIKSTIVFGGVKINPQ 137
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L+ GVD+L+ATPGR M L + ++ L
Sbjct: 138 MMKLRGGVDILVATPGRLMDLYNQRAVKFDQL 169
>gi|373110078|ref|ZP_09524350.1| hypothetical protein HMPREF9712_01943 [Myroides odoratimimus CCUG
10230]
gi|371643613|gb|EHO09162.1| hypothetical protein HMPREF9712_01943 [Myroides odoratimimus CCUG
10230]
Length = 449
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q + + EGVD+L+ TPGR M L +G+L+ NL+
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQ 147
>gi|308804231|ref|XP_003079428.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116057883|emb|CAL54086.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 327
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 269 SFKELGCSDY-MIESLKRQNFLRPSQIQAMAFPPV-VEGKSCILADQSGSGKTLAYLLPV 326
+F E G +D ++E+L+ P++IQ A + EG + +A +GSGKTLAYLLPV
Sbjct: 19 TFAEAGLADAALMEALRAMEITEPTEIQYKAIGVIGSEGGNAFIASHTGSGKTLAYLLPV 78
Query: 327 IQRLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
IQR++ E + G + P+VV+ PT ELA QV ++LS F S +V GG R
Sbjct: 79 IQRMKAAEAEAGERLAKPKRPKVVVTCPTRELAEQVAEVAKALSHVA-KFSSCLVVGGKR 137
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
TQ E L VDV+I TPGR + +++G L L
Sbjct: 138 LSTQKERLDSPVDVVIGTPGRLIKHVEQGNLFL 170
>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
Length = 436
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++ +++ + + PS IQ A P V+EGK + A Q+G+GKT ++LP+++R
Sbjct: 3 FTELGLSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ R +IL PT ELA+Q+ N S+ +P RS VV GG + Q
Sbjct: 63 LSNG-----GRTRPNHVRALILTPTRELAAQIHENAVVYSRH-LPLRSSVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G D+L+ATPGR + L ++ ++ L
Sbjct: 117 MMALRKGTDILVATPGRLLDLYQQNAVKFSQL 148
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 94 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 176
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ F + G S +++ +L Q ++ P+ IQA A P +++G+ + A Q+G+GKT + LP
Sbjct: 63 SQVRFADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALP 122
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQ L STS SP R +IL PT ELA QV N ++ ++ P RS VV
Sbjct: 123 IIQMLLAH------ASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQH-TPLRSTVV 175
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG K Q L+ GV+++IATPGR +
Sbjct: 176 FGGMDMKGQTVILKAGVEIVIATPGRLL 203
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L K R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNG-----PKRKFNQVRALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L+ GVDVL+ATPGR + L + ++ L
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQL 148
>gi|104779961|ref|YP_606459.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
[Pseudomonas entomophila L48]
Length = 443
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L+ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLVRTLQALDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K + S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVAANSVRALVLVPTRELAEQVHANVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAIKF 146
>gi|423135502|ref|ZP_17123148.1| hypothetical protein HMPREF9715_02923 [Myroides odoratimimus CIP
101113]
gi|371641511|gb|EHO07094.1| hypothetical protein HMPREF9715_02923 [Myroides odoratimimus CIP
101113]
Length = 449
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q + + EGVD+L+ TPGR M L +G+L+ NL+
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQ 147
>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
z3032]
Length = 500
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 4 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 64 RLTAKAPHAQGRRPV---RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSINP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 120 QMMKLRSGVDVLIATPGRLLDLEHQNAVKL 149
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP++Q
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYGKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 154
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L+ GVDVL+ATPGR + L + ++ L
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQL 148
>gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 372
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L S + +L RQ + + IQA A P V+ GK + A Q+G+GKT A+ P+++
Sbjct: 2 NFSDLALSPETLTALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L+ E ++ + + RV+IL PT ELA+QV N +LS G+P V GG +
Sbjct: 62 LLKSNE-----RAKANTARVLILTPTRELAAQVGENVANLS-AGLPLNYAVAFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L++GVD+L+ATPGR + L K+
Sbjct: 116 QMMKLRKGVDILVATPGRLLDLYKQ 140
>gi|397167613|ref|ZP_10491055.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
gi|396090971|gb|EJI88539.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
Length = 481
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q +++P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDALGLNPEILRAVAEQGYVQPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+E + R +IL PT ELA+Q+ N R S+ + RS+VV GG
Sbjct: 62 LLVQKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSQY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + L+L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNALKL 147
>gi|421615849|ref|ZP_16056868.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
gi|409782031|gb|EKN61598.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
Length = 441
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 91/145 (62%), Gaps = 5/145 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G ++ S S R ++L PT ELA QV + R+ + +P R+ V GG
Sbjct: 62 RL---TLEG-ARVASNSVRALVLVPTRELAEQVHESFRAYGQ-DLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L++G+DVL+ATPGR + L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQ 141
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 91/153 (59%), Gaps = 4/153 (2%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K FKE G ++E++ +L + IQA++FPP++EG+ + A Q+G+GKT A+ LP+
Sbjct: 3 KKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPL 62
Query: 327 IQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ R+ + S S + P R+++L PT ELA Q+ N + + G+P R+ ++ GG
Sbjct: 63 LNRMIPK--ASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAYAD-GLPLRTSLIYGGVD 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L G D++IATPGR + +++ + L
Sbjct: 120 FNAQKLELMRGADIVIATPGRLLDHVEQRTINL 152
>gi|433775456|ref|YP_007305923.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
gi|433667471|gb|AGB46547.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
Length = 473
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++++ F P IQ A PP +EG+ Q+GSGKT A+ LP++ +
Sbjct: 18 FAALGITGALLKATHNAGFAEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 77
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + +K+T R +ILAPT ELA Q+ + L+K G + +V GG + +Q
Sbjct: 78 IIALGTKRRAKTT----RALILAPTRELAVQIEDTIKILAK-GAHVSTALVLGGVSRFSQ 132
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ + GVD+LIATPGR L++EG L L + +W
Sbjct: 133 VKKVAPGVDILIATPGRLTDLVREGDLILSDTKWL 167
>gi|365539790|ref|ZP_09364965.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 465
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V+EGK + A Q+G+GKT + LP++
Sbjct: 2 SFASLGLSHAILKAVASQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++G K R +IL PT ELA+QV N + + +P RS V+ GG +
Sbjct: 62 LL----VKG-PKVGPNQVRALILTPTRELAAQVADNVATYGQ-NLPLRSEVIFGGVKVNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ ++ GVD+L+ATPGR + L + ++ L
Sbjct: 116 QMMKMRRGVDILVATPGRLLDLYNQNAIKFNQL 148
>gi|455643914|gb|EMF23035.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii GTC 09479]
Length = 448
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|449708114|gb|EMD47635.1| ethylene-responsive RNA helicase, putative [Entamoeba histolytica
KU27]
Length = 541
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E +++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 160 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 219
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q +
Sbjct: 220 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTAIKTVRCFGGVPQSS 274
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++ Q G D+ +ATPGR + IK G+ L
Sbjct: 275 QMKDFQSGCDICVATPGRLIDFIKRGVTSL 304
>gi|395227497|ref|ZP_10405823.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|421844472|ref|ZP_16277630.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424728799|ref|ZP_18157404.1| atp-dependent rna helicase [Citrobacter sp. L17]
gi|394718825|gb|EJF24446.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|411774627|gb|EKS58117.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896670|gb|EKU36452.1| atp-dependent rna helicase [Citrobacter sp. L17]
Length = 448
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 535
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E +++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 154 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 213
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q +
Sbjct: 214 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTAIKTVRCFGGVPQSS 268
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++ Q G D+ +ATPGR + IK G+ L
Sbjct: 269 QMKDFQSGCDICVATPGRLIDFIKRGVTSL 298
>gi|412990813|emb|CCO18185.1| predicted protein [Bathycoccus prasinos]
Length = 1225
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 7/156 (4%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S+ ++E ++R F P IQA A P ++ G+ CI ++GSGKTLAY+LP++
Sbjct: 483 KSWNQAGLSNKIMELIRRSGFENPMPIQAQALPIIMSGRDCIAVAKTGSGKTLAYILPML 542
Query: 328 QRLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ ++ Q E++ P +I+ PT EL +Q+ CR K V R + V GG
Sbjct: 543 RHIKDQPEIK-----NGDGPIAMIVGPTRELVTQIGKECRKFGKT-VGVRCVSVYGGSGV 596
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
++Q+ +L+ G + + TPGR + ++ G ++ NLR
Sbjct: 597 QSQITDLKRGCEAVACTPGRMIDILTTGAGKITNLR 632
>gi|392545351|ref|ZP_10292488.1| ATP-dependent RNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 432
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK D ++++L NF + IQ A P V G + Q+G+GKT A+ LPVI
Sbjct: 2 NFKSFSFPDALLQALDELNFHTLTPIQQAAIPVVRRGHDVLATAQTGTGKTAAFALPVIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L + S R +ILAPT ELA Q+ +NC++ + P V GG +
Sbjct: 62 RL-------LEGESLDSARALILAPTRELAEQIANNCQAFCQY-TPLTVQAVYGGVNIEG 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q + L +GVD+L+ATPGR + LI+ G + L +++
Sbjct: 114 QTQRLSQGVDILVATPGRLLDLIRLGAVSLAQVKY 148
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L Q S S SP R +IL PT ELA QV N + + P RS VV GG
Sbjct: 78 LLQH------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + +++ + L
Sbjct: 131 DMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNL 164
>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
Length = 448
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 568
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + S+ R ++L PT ELA+QV + R+ K + +S V+ GG
Sbjct: 62 RLAQGQAP-TSRFGGRGVRALVLTPTRELAAQVEESVRAYGKH-LDIKSTVIFGGVGMNP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E ++ GVDVL+ATPGR + L ++G + L
Sbjct: 120 QIERIKRGVDVLVATPGRLLDLQQQGFMDL 149
>gi|375130530|ref|YP_004992630.1| hypothetical protein [Vibrio furnissii NCTC 11218]
gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
Length = 536
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S +++++K + + PS IQA A P V++GK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G + + R +IL PT ELA+QV + S+ +P S VV GG + Q
Sbjct: 63 -----LTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|399057862|ref|ZP_10744291.1| DNA/RNA helicase, superfamily II [Novosphingobium sp. AP12]
gi|398041610|gb|EJL34666.1| DNA/RNA helicase, superfamily II [Novosphingobium sp. AP12]
Length = 499
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++S++ + P+ IQA PPV+ K I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLQSVEAAGYTEPTPIQAQTIPPVLMMKDIIGIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G + + PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 61 -----DILGHGRRRALMPRSLILEPTRELAAQVAENFEKYGK-NHDLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL+ L GVDVLIATPGR M L + G + L
Sbjct: 115 QLKALSAGVDVLIATPGRLMDLFERGKIML 144
>gi|423131726|ref|ZP_17119401.1| hypothetical protein HMPREF9714_02801 [Myroides odoratimimus CCUG
12901]
gi|371641365|gb|EHO06950.1| hypothetical protein HMPREF9714_02801 [Myroides odoratimimus CCUG
12901]
Length = 448
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q + + EGVD+L+ TPGR M L +G+L+ NL+
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQ 147
>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
Length = 410
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL ++++L+++N+ P+ IQ A PP++ G+ + Q+G+GKT A+ +P +Q
Sbjct: 3 FKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ G ++ + R +++ PT ELA Q+ N + K +P + V+ GG QK Q
Sbjct: 63 LHKD---GAPRAGRRNIRALVITPTRELALQIYENFCAYGKY-LPLKCAVIFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
LQ+GVD+L+ATPGR L+++ ++ L N+
Sbjct: 119 EAALQKGVDILVATPGRLNDLMQQKLIDLKNVEL 152
>gi|357384319|ref|YP_004899043.1| ATP-dependent RNA helicase RhlE [Pelagibacterium halotolerans B2]
gi|351592956|gb|AEQ51293.1| ATP-dependent RNA helicase RhlE [Pelagibacterium halotolerans B2]
Length = 473
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 11/167 (6%)
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
R A G + F+ LG D++++++ F P+ IQ A P V+EG+ + Q+
Sbjct: 32 RRANGAAGKGHNLTQFQALGLDDHLLKAIAGLGFSDPTPIQERAIPLVLEGRDIMGLAQT 91
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKC 371
G+GKT A+ LP+IQ+L L+K+ P + +ILAPT EL +Q+ N R+ +K
Sbjct: 92 GTGKTAAFGLPIIQQL-------LAKTGKPDPKTCKALILAPTRELVNQIAVNLRAFTK- 143
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
G P + V GG TQ++ L G D+++ATPGR + L+K ++L
Sbjct: 144 GSPIKVNSVVGGMSIGTQIKALAHGSDIVVATPGRLLDLVKRQAIRL 190
>gi|365105460|ref|ZP_09334707.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
gi|363643475|gb|EHL82793.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
Length = 448
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|258621511|ref|ZP_05716544.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
gi|424810184|ref|ZP_18235547.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus SX-4]
gi|258586129|gb|EEW10845.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
gi|342322555|gb|EGU18344.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus SX-4]
Length = 412
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LPV+++
Sbjct: 17 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPVLEK 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV + +S+ V GG ++ Q
Sbjct: 77 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGQ-DTGLKSLAVFGGVDEQAQ 130
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L +GVDVL+ATPGR M L
Sbjct: 131 KQRLIDGVDVLVATPGRLMDL 151
>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase [Burkholderia vietnamiensis G4]
gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 483
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 154
>gi|449052728|ref|ZP_21732359.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
gi|448875863|gb|EMB10868.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
Length = 451
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|444426590|ref|ZP_21222002.1| hypothetical protein B878_11633 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240160|gb|ELU51707.1| hypothetical protein B878_11633 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 521
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEM 150
>gi|387904228|ref|YP_006334566.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387579120|gb|AFJ87835.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 483
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|379731981|ref|YP_005324177.1| ATP-dependent RNA helicase RhlE [Saprospira grandis str. Lewin]
gi|378577592|gb|AFC26593.1| ATP-dependent RNA helicase RhlE [Saprospira grandis str. Lewin]
Length = 414
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 10/154 (6%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
FSR F+++ + E L F RP+ IQ A P+++G+ + Q+G+GKT A+ +
Sbjct: 3 FSRYPFEQI-----LKERLAALEFKRPTDIQYKAIEPILKGQDVLAVAQTGTGKTAAFAI 57
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+ Q+L L G +S SP+VV++ PT ELA Q+ S +L++ G ++ + GG
Sbjct: 58 PLAQQL----LAGKDQSKGRSPKVVVMVPTHELAQQIESFIHNLTR-GSWIETLAIYGGS 112
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+Q QL L+ GVD+L+ATPGR L +G L+L
Sbjct: 113 KQDKQLAKLETGVDILVATPGRLFDLQAQGALRL 146
>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139153|ref|ZP_09345663.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|378977819|ref|YP_005225960.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033962|ref|YP_005953875.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|419974710|ref|ZP_14490127.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977806|ref|ZP_14493104.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987058|ref|ZP_14502183.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991473|ref|ZP_14506438.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997938|ref|ZP_14512730.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003806|ref|ZP_14518449.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006904|ref|ZP_14521400.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012540|ref|ZP_14526853.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020791|ref|ZP_14534976.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024066|ref|ZP_14538080.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031055|ref|ZP_14544878.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038792|ref|ZP_14552435.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041896|ref|ZP_14555391.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046990|ref|ZP_14560308.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056136|ref|ZP_14569296.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061472|ref|ZP_14574460.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064158|ref|ZP_14576968.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069526|ref|ZP_14582181.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078157|ref|ZP_14590617.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420084520|ref|ZP_14596776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424829756|ref|ZP_18254484.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424934331|ref|ZP_18352703.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077527|ref|ZP_18480630.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425088160|ref|ZP_18491253.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090700|ref|ZP_18493785.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428940153|ref|ZP_19013245.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339761090|gb|AEJ97310.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|363654512|gb|EHL93410.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|364517230|gb|AEW60358.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345127|gb|EJJ38254.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397345977|gb|EJJ39096.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397353346|gb|EJJ46420.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397361555|gb|EJJ54216.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363734|gb|EJJ56371.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397368249|gb|EJJ60856.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381416|gb|EJJ73587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385751|gb|EJJ77846.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387462|gb|EJJ79487.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399449|gb|EJJ91101.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400795|gb|EJJ92433.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403895|gb|EJJ95434.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417455|gb|EJK08620.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417749|gb|EJK08912.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397420966|gb|EJK12007.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430627|gb|EJK21316.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433767|gb|EJK24410.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397442774|gb|EJK33116.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397445167|gb|EJK35418.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450132|gb|EJK40246.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|405593236|gb|EKB66688.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405602292|gb|EKB75434.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405613678|gb|EKB86407.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808518|gb|EKF79769.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|414707181|emb|CCN28885.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426302754|gb|EKV64945.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
Length = 451
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
Length = 527
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEM 150
>gi|336249396|ref|YP_004593106.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
gi|334735452|gb|AEG97827.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
Length = 446
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q++ + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTQDQPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
Length = 444
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 87/139 (62%), Gaps = 5/139 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG S ++ ++++Q + + IQ A P V++G + Q+G+GKT + LP++QR
Sbjct: 3 FKDLGLSAELLRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + Q + KS P+V++L PT ELA+QV + R + +PFRS V+ GG Q
Sbjct: 63 L-QSKYQDVQKSF---PKVLVLTPTRELAAQVHESVRDYGRY-LPFRSAVIFGGVSINPQ 117
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L +GVD+++ATPGR +
Sbjct: 118 KQKLIKGVDIVVATPGRLL 136
>gi|423328147|ref|ZP_17305955.1| hypothetical protein HMPREF9711_01529 [Myroides odoratimimus CCUG
3837]
gi|404605297|gb|EKB04899.1| hypothetical protein HMPREF9711_01529 [Myroides odoratimimus CCUG
3837]
Length = 448
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q + + EGVD+L+ TPGR M L +G+L+ NL+
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQ 147
>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
Length = 447
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLVTHQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
1DA3]
gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
1DA3]
Length = 421
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F +F +LG ++++L N + P+ +Q + P V+EGK + A Q+G+GKT A+
Sbjct: 3 FIMSVNFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFG 62
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
LP+IQ ++Q K +G+P+ +IL PT ELA QV+ N S + + V GG
Sbjct: 63 LPIIQTVQQ-------KKRNGTPQALILVPTRELAQQVMDNLTQYS-ANTDLKIVCVYGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 115 TSIGVQKRKLEEGADILIATPGRLL 139
>gi|420369243|ref|ZP_14869968.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391321569|gb|EIQ78292.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
Length = 447
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITHQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 9/157 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + +++++ RQ + P+ IQ A P +++ + I Q+G+GKT A+ LP++Q
Sbjct: 2 TFKELNLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E +G+ + +IL PT ELA Q+ N +P R V+ GG Q
Sbjct: 62 NLASERRKGI--------KALILTPTRELAIQIQENFEHYG-THLPLRCTVIFGGVSQVP 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+E L+ GVD+LIATPGR LI +G + + + +
Sbjct: 113 QVERLRRGVDILIATPGRLCDLINQGYVDISQIEVFV 149
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N ++ +K RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q E L+ GV++LIATPGR + +++ L
Sbjct: 125 VDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANL 159
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S ++ ++ + + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R L + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 R-----LTASAPRKKGAIRALILTPTRELALQIGESFEAYGKY-LTLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ L++GVD+LIA PGR L+ +G+L L N+ +
Sbjct: 116 QVAALKKGVDILIACPGRLNDLVGQGLLDLSNIEIF 151
>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
Length = 417
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 95/157 (60%), Gaps = 7/157 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L D + ++L+ + + +P+ IQA A P +++G+ + Q+G+GKT A+ +P++Q
Sbjct: 2 NFTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ ++ + + +IL PT ELA Q+ + + + + R++VV GG +Q
Sbjct: 62 NLTEKNIR------NNQIKALILTPTRELAIQIEESFNAYGRH-LRLRNLVVFGGVKQSG 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q L++GVD+L+ATPGR + I +GI+ L NL +
Sbjct: 115 QEAALKKGVDILVATPGRLLDFISQGIISLKNLEIFV 151
>gi|402217906|gb|EJT97985.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 606
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 93/161 (57%), Gaps = 8/161 (4%)
Query: 269 SFKELGC-SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+F+EL C + +L++ F P+ IQA +P V+ GK I Q+GSGKTL+Y+LP I
Sbjct: 138 TFEELECIPQELHNTLRKTGFPTPTPIQAQTWPIVLSGKDLIGVAQTGSGKTLSYILPAI 197
Query: 328 QRLRQEELQGLSKSTSG----SPRVVILAPTAELASQVLSNC-RSLSKCGVPFRSMVVTG 382
LR + +STS SP +ILAPT ELA+Q+ + + + C + + V G
Sbjct: 198 AHLRAQPSWRPGQSTSSGFGISPSALILAPTRELATQIAAEAGKYMLSCRMAV--VPVYG 255
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
G ++ Q+ NL+ G DV++ATPGR LI+ IL L + +
Sbjct: 256 GADKRMQMNNLRRGADVVVATPGRLNDLIQSNILNLSRISY 296
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 146 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTSLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GV++LIATPGR + +++ L
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANL 233
>gi|386002133|ref|YP_005920432.1| ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210189|gb|AET64809.1| ATP-dependent RNA helicase, putative [Methanosaeta harundinacea
6Ac]
Length = 418
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 96/155 (61%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L ++ + +L ++ + P+ IQA A P ++ G+ + Q+G+GKT A++LPV+QR
Sbjct: 3 FEDLDIAEPLQRALTKEGYANPTPIQAEAIPHLLRGEDLLGIAQTGTGKTAAFVLPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ +E ++ G+PR ++LAPT ELA+Q+ + + + + F V GG Q+ Q
Sbjct: 63 ISEER----RRTVPGAPRALVLAPTRELAAQIDESFGTYGQF-LQFSHAAVFGGVSQEPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ L GV+ L+ATPGR + L+++G + L + ++
Sbjct: 118 VKALSRGVEALVATPGRLLDLMEQGHIDLKGIEFF 152
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQSAELRRGVEILIATPGRLLDHVQQ 154
>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 402
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ ++++L+ +F +P+ IQA A PP++EG+ + Q+G+GKT A+ LP++Q
Sbjct: 5 TFDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+ + + S R +ILAPT ELA Q+ N R L +P R +++ GG +K
Sbjct: 65 HLMQKR----ERPRAFSTRALILAPTRELAVQIDDNLRMLG-GELPIRRVLILGGVGRKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ +Q G D++I TPGR L+ L L
Sbjct: 120 QVQRMQRGADIVIGTPGRICDLMSTNELLL 149
>gi|393770590|ref|ZP_10359069.1| DEAD/DEAH box helicase-like protein [Novosphingobium sp. Rr 2-17]
gi|392723937|gb|EIZ81323.1| DEAD/DEAH box helicase-like protein [Novosphingobium sp. Rr 2-17]
Length = 502
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 NFADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 62 VLAHGRRRAL------MPRSLILEPTRELAAQVAENFEKYGK-NHNLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ LQ+GVDVLIATPGR M L + G + L
Sbjct: 115 QVKALQDGVDVLIATPGRLMDLFERGKIML 144
>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 1043
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 8/153 (5%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R F ELG ++E L Q L P IQ A P + G+ + Q+GSGKTLA+ +PV
Sbjct: 613 RTRFSELGVPQPIVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPV 672
Query: 327 IQRLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
I RL S + G PR +++APT ELA QV L+K + +++V GG
Sbjct: 673 ITRL------AASGTGHGRQPRALLMAPTRELAQQVNDVLFPLAKA-MGLSTILVAGGMS 725
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL L+ GVD+++ATPGR + LI+ G +L
Sbjct: 726 YTPQLRALERGVDIVVATPGRLIDLIERGSAKL 758
>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 426
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++K Q + +PS IQ A P ++ GK + A Q+G+GKT + LP++
Sbjct: 2 SFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLLA 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E ++ + RV+IL PT ELA+Q+ + + + +P RS VV GG +
Sbjct: 62 NLMKGE-----RAKANQVRVLILTPTRELAAQIHESVCNYGQ-NLPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVDVL+ATPGR + L ++ ++ L
Sbjct: 116 QMQLLRRGVDVLVATPGRLLDLYQQNAVRFKQL 148
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 89/155 (57%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 146 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GV++LIATPGR + +++ L
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANL 233
>gi|419231381|ref|ZP_13774170.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
gi|378081545|gb|EHW43497.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
Length = 454
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G S R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKG-----RRSVRALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
Length = 423
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S ++++ + + +P+ IQ A P V++G+ + A Q+G+GKT A++LP++Q
Sbjct: 2 TFDALGLSPNLVKAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R L + + R ++L PT ELASQV + + + + RS VV GG R +
Sbjct: 62 R-----LAFVGGARGRQVRTLVLTPTRELASQVHDSVLTYGRY-LDLRSAVVFGGVRAEP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+E L+ GVDVL+ATPGR + L ++G + L
Sbjct: 116 QIEALEPGVDVLVATPGRLLDLAQQGYVDFSAL 148
>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 549
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKVGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVDVL+ATPGR + L ++ ++ L
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLEQQKAVKFNQL 148
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQSAELRRGVEILIATPGRLLDHVQQ 154
>gi|424925048|ref|ZP_18348409.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404306208|gb|EJZ60170.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 446
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL++ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K + S R +IL PT ELA QV + R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVAANSARALILVPTRELAEQVHESVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVDVL+ATPGR + L ++ L+L L+
Sbjct: 117 QMMKLRGGVDVLVATPGRLIDLFRQNALKLDQLQ 150
>gi|428151523|ref|ZP_18999239.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|427538506|emb|CCM95377.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 459
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|421909360|ref|ZP_16339178.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410116748|emb|CCM81803.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 463
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
Length = 540
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S +++++K + + PS IQA A P V++GK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G + + R +IL PT ELA+QV + S+ +P S VV GG + Q
Sbjct: 63 -----LTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|452964578|gb|EME69615.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 480
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 91/149 (61%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P ++EG+ + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTSPTPIQEQSIPHLIEGRDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + KS RV++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDTFKKRAMPKSC----RVLVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ + GVDVL+ATPGR + LI +G ++L
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIDQGAIRL 148
>gi|345872285|ref|ZP_08824222.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343919163|gb|EGV29916.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 446
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQ A P V+ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFAELGLSAELLRAVDAQGYTHPTPIQLQAIPAVLLGRDVLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G + PR ++L PT ELA+QV + R L +P RS+ + GG
Sbjct: 62 LLNAAQSNGRQR----RPRALVLTPTRELAAQVGESVR-LYGQNLPLRSLQIFGGVGMGP 116
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+L+ATPGR +
Sbjct: 117 QVDKLRRGVDILVATPGRLL 136
>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 485
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D ++++L + + P+ IQ A P ++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L +E SKST G R+ +IL PT ELA Q+ + + + + R+ V+ GG Q
Sbjct: 63 LSEER----SKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRH-LNIRNTVIFGGVSQH 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
+Q+ L+ GVDVLIATPGR + L+ +G + L +++++
Sbjct: 118 SQVNTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFF 154
>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
SCRI1043]
gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 441
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + RP+ IQA A PP +EG+ + + +G+GKT AYLLPV+Q
Sbjct: 5 NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PRV+IL PT ELA QV R+ + +TGG
Sbjct: 65 -----HLIDFPRKKSGPPRVLILTPTRELAMQVADQARAFA-AHTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR M IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLMQYIKE 143
>gi|336124129|ref|YP_004566177.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335341852|gb|AEH33135.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 485
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V+EGK + A Q+G+GKT + LP++
Sbjct: 23 SFASLGLSHAILKAVASQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILD 82
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++G K R +IL PT ELA+QV N + + +P RS V+ GG +
Sbjct: 83 LL----VKG-PKVGPNQVRALILTPTRELAAQVADNVATYGQ-NLPLRSEVIFGGVKVNP 136
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ ++ GVD+L+ATPGR + L + ++ L
Sbjct: 137 QMMKMRRGVDILVATPGRLLDLYNQNAIKFNQL 169
>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
[Acyrthosiphon pisum]
Length = 641
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFKE G + ++ +L N+ P+ IQ A P ++ GK I + Q+GSGKT A++LP++
Sbjct: 223 SFKESGLCEVLLSNLTECNYGNPTPIQKYAIPIIMNGKDMIASAQTGSGKTAAFVLPILN 282
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E + + P+ +IL+PT ELASQ+ S LS G R + GG
Sbjct: 283 SLISEPSELVFDYNHCEPQCLILSPTRELASQISSFAFKLSN-GTSIRCRALYGGTAVYH 341
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E + GV +++ATPGR + + G++ +LR+
Sbjct: 342 QREKILSGVHIIVATPGRLIDFVNRGLITFSSLRF 376
>gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 401
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 9/151 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL ++ +++ Q++ +P+ IQA A P ++ K + +G+GKT A++LP +Q
Sbjct: 2 TFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPALQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
L + S PRV+ILAPT ELA Q+ + L + C PF S VVTGGF
Sbjct: 62 FLLDD------PRPSRKPRVLILAPTRELAFQIHKVVKQLGAHC--PFESNVVTGGFASD 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QLE LQ +D+L+ATPGR + ++ + + L
Sbjct: 114 KQLEILQSKIDILVATPGRLLNIMSKEFIDL 144
>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
Length = 467
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++++ F P IQ A PP +EG+ Q+GSGKT A+ LP++ +
Sbjct: 12 FAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSK 71
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + +K+T R +ILAPT ELA Q+ + L+K G + +V GG + +Q
Sbjct: 72 IIALGTKRRAKTT----RALILAPTRELAVQIEDTIKILAK-GAHVSTALVLGGVSRFSQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ + GVD+LIATPGR L++EG L L + +W
Sbjct: 127 VKKVAPGVDILIATPGRLTDLVREGDLILSDTKWL 161
>gi|410943326|ref|ZP_11375067.1| ATP-dependent RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 386
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 15 FAAFGLIPPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E ++ PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 75 LSKGE-------SAHGPRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ ++ +GVD+++AT GR + L+ +G L L L +
Sbjct: 127 VRSIVDGVDIVVATHGRLLDLVMQGDLVLEYLSY 160
>gi|375263173|ref|YP_005025403.1| ATP-dependent RNA helicase [Vibrio sp. EJY3]
gi|369843600|gb|AEX24428.1| ATP-dependent RNA helicase [Vibrio sp. EJY3]
Length = 417
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++E+L N + P+ +Q + P V+EGK+ + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQNLVETLSTLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++QE+L +G+P+ +IL PT ELA QV + S R + V GG
Sbjct: 64 SVQQEKL-------NGTPKALILVPTRELAQQVFESL-SQYASQTALRIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q + L++G D+LIATPGR +
Sbjct: 116 QKKKLEDGADILIATPGRLL 135
>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
Length = 609
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL +++++L + PS IQ M PP++EGK + Q+G+GKT A+ LP++
Sbjct: 9 SFDELQLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILA 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + LSK P+ ++LAPT ELA QV + ++ F+ + + GG +T
Sbjct: 69 RLDPK----LSK-----PQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRT 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
QL L+ GV V++ TPGR M ++ G L L L
Sbjct: 120 QLRQLERGVHVIVGTPGRVMDHMRRGSLNLSAL 152
>gi|421918244|ref|ZP_16347776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410119452|emb|CCM90401.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 418
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|409099575|ref|ZP_11219599.1| DEAD/DEAH box helicase [Pedobacter agri PB92]
Length = 433
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 99/156 (63%), Gaps = 4/156 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + ++++L+++ + +P+ IQ + P +++GK + Q+G+GKT A+ +P++Q
Sbjct: 3 FKELNLIEPILKALEKEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + +K+T + + ++L PT ELA Q+ + ++ + R +V+ GG Q +Q
Sbjct: 63 LHEKHIN--TKATK-NIKALVLTPTRELAIQIEESFKAYG-SNLNLRHLVIFGGVNQHSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
+E L++GVD+L+ATPGR + L+ +G + L + +
Sbjct: 119 VEALRKGVDILVATPGRLLDLMNQGFITLNTIELFV 154
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S ++++L ++ +++PS IQ A P V+ G+ + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + ++ R +IL PT ELA Q+ N G P S V+ GG K
Sbjct: 62 NLME---RPKNRQKKKPVRALILTPTRELALQIHENIEEYG-AGTPINSAVIFGGVSAKP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++L+ G+D+L+ATPGR + LI + + L
Sbjct: 118 QIQSLRRGIDILVATPGRLLDLIGQHEIDL 147
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 5/140 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +++++K Q + P+ IQ A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + K RV++L PT ELA+QV + ++ K + + S VV GG
Sbjct: 62 RLSETH----PKMGKKQIRVLVLTPTRELAAQVAESIKTYGKY-MKYTSTVVYGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL ++ GVD++IATPGR +
Sbjct: 117 QLATIRRGVDIVIATPGRLL 136
>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
Length = 564
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + S+ R ++L PT ELA+QV + R+ K + +S V+ GG
Sbjct: 62 RLAQGQAP-TSRFGGRGVRALVLTPTRELAAQVEESVRTYGKH-LDIKSTVIFGGVGMNP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E ++ GVDVL+ATPGR + L ++G + L
Sbjct: 120 QIERIKRGVDVLVATPGRLLDLQQQGFIDL 149
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q L+ GV++LIATPGR + +++
Sbjct: 147 VDMNPQSAELRRGVEILIATPGRLLDHVQQ 176
>gi|320166666|gb|EFW43565.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 754
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++K+F+ LG S +I +L Q P++IQ+ A P V+ G +A ++GSGKTL+YLLP
Sbjct: 351 NKKTFESLGLSPALIAALAEQEITTPTRIQSRALPQVLAGHDTGIAAETGSGKTLSYLLP 410
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+++ +++ + QG G PR +IL P LA QV + + L K V F + V GG R
Sbjct: 411 IVEGIKKSDAQG-DFVRPGRPRALILVPHRLLAMQVANVSKRLGKA-VKFSTFCVMGGDR 468
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q +++ +DV++ATP R + L++ + L ++++
Sbjct: 469 ISRQKSAMEKPLDVMVATPQRLLELLQNKYVSLADVKY 506
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 35 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 94
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 95 IIQRLLPH------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVV 147
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
GG Q + L+ GV++LIATPGR + +++ L
Sbjct: 148 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANL 185
>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
Length = 412
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 97/150 (64%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++++ + P+ IQ+ A PV++GK + + Q+G+GKT A+ LP+++
Sbjct: 2 NFSDLGLSPKLLQAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ ++S SP+ +I+ PT ELA+Q+ ++ ++ SK + R++ V GG +
Sbjct: 62 TLLRKP------NSSKSPKFLIITPTRELAAQIEASAQTYSKY-ISCRTLAVFGGVKIGP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVLIATPGR + L ++G + L
Sbjct: 115 QIRQLKQGVDVLIATPGRLLDLSEQGEVDL 144
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ ++ + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + ++ + R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 62 LLSRGK-----RAPAKQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L +GVD+L+ATPGR + L +G + L
Sbjct: 116 QISKLGKGVDILVATPGRLLDLYNQGAVSFKQL 148
>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
MZO-2]
gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V51]
gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V51]
gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
MZO-2]
Length = 422
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--RETNSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|429330588|ref|ZP_19211374.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
gi|428764698|gb|EKX86827.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
Length = 441
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 94/154 (61%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L N+ P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAKLGLIEPLLRALDGLNYNTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G ++ + S R ++L PT ELA QV +N R ++ +P R+ V GG
Sbjct: 62 RL---TLEG-AQVAANSVRALVLVPTRELAEQVHANIREYAE-HLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++G+D+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGIDLLVATPGRLLDLFRQNAVKFNQLQ 150
>gi|453331172|dbj|GAC86751.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 417
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 46 FAAFGLISPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E S G PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 106 LSKGE------SVHG-PRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 157
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ ++ +GVD+++AT GR + L+ +G L L L +
Sbjct: 158 VRSIVDGVDIVVATHGRLLDLVTQGELVLEYLTY 191
>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 434
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+ F +FK LG S ++ +++ Q + P+ IQ A P V+ GK + + Q+G+GKT +
Sbjct: 2 EHFLFMNFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGF 61
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
LP++QRL +Q + R +IL PT ELA+QV N R SK + RS+VV G
Sbjct: 62 TLPMLQRLNDSPIQMKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LRLRSLVVFG 117
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
G Q+ L+ GVD+L+ATPGR + L + + L
Sbjct: 118 GVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDL 153
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 35 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 94
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 95 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 147
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q L+ GV++LIATPGR + +++
Sbjct: 148 VDMNPQSAELRRGVEILIATPGRLLDHVQQ 177
>gi|375262622|ref|YP_005024852.1| ATP-dependent RNA helicase RhlE [Vibrio sp. EJY3]
gi|369843050|gb|AEX23878.1| ATP-dependent RNA helicase RhlE [Vibrio sp. EJY3]
Length = 506
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R +IL PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNHIRALILTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYSQNAIKFDQL 148
>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 574
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 2/149 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL + +I+++ Q + P+ IQA A P V++G + Q+G+GKT A++LP++ +
Sbjct: 3 FEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPMLHK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q E +K R ++L PT ELA+QV + ++ K V S V+ GG Q
Sbjct: 63 LSQSE-AARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKY-VELTSTVIFGGVGMNPQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ +++GVD+L+ATPGR + L+++G+L L
Sbjct: 121 ISRVKKGVDILVATPGRLLDLLQQGVLDL 149
>gi|374366617|ref|ZP_09624693.1| RNA helicase [Cupriavidus basilensis OR16]
gi|373101750|gb|EHP42795.1| RNA helicase [Cupriavidus basilensis OR16]
Length = 577
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 18/159 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP+
Sbjct: 12 SFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPL-- 69
Query: 329 RLRQEELQGLSKSTSGSP---------RVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
LQ LS+S++G R ++L PT ELA+QV + R+ K + RSMV
Sbjct: 70 ------LQLLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKY-LKLRSMV 122
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ GG Q+E L+ GVD+++ATPGR + + + + L
Sbjct: 123 MFGGVGINPQIEQLKRGVDIVVATPGRLLDHLSQRTIDL 161
>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
623-39]
gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
AM-19226]
gi|384423066|ref|YP_005632425.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3984-4]
gi|421349305|ref|ZP_15799674.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
gi|421355813|ref|ZP_15806144.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
gi|424589155|ref|ZP_18028621.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1037(10)]
gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
623-39]
gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
AM-19226]
gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3984-4]
gi|395950483|gb|EJH61102.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
gi|395955922|gb|EJH66516.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
gi|408038333|gb|EKG74682.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1037(10)]
Length = 422
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|350533287|ref|ZP_08912228.1| ATP-dependent RNA helicase [Vibrio rotiferianus DAT722]
Length = 417
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++++L N + P+ +Q + P V+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q++ +G+P+ +IL PT ELA QV+ N + + + V GG
Sbjct: 64 TVQQQK-------RNGTPQALILVPTRELAQQVMDNLTQYA-TNTDLKIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q NL+EG D+LIATPGR +
Sbjct: 116 QKRNLEEGADILIATPGRLL 135
>gi|422910220|ref|ZP_16944861.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
gi|424659088|ref|ZP_18096339.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
gi|341633724|gb|EGS58513.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
gi|408053273|gb|EKG88291.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
Length = 422
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 520
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ Q + P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ R +ILAPT ELA+QV + R K +P S + GG
Sbjct: 62 RLSAMPRQKINGHV--PIRALILAPTRELAAQVEESVRQYGKY-LPLTSACIFGGVGINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + +++G + L +++
Sbjct: 119 QITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQ 152
>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
gi|417823355|ref|ZP_12469953.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
gi|419836503|ref|ZP_14359943.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46B1]
gi|421343079|ref|ZP_15793483.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|422306779|ref|ZP_16393951.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1035(8)]
gi|423734981|ref|ZP_17708192.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41B1]
gi|424009367|ref|ZP_17752307.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-44C1]
gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
gi|340049485|gb|EGR10401.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
gi|395941646|gb|EJH52323.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|408625435|gb|EKK98344.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1035(8)]
gi|408630434|gb|EKL03031.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41B1]
gi|408857053|gb|EKL96741.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46B1]
gi|408864391|gb|EKM03834.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-44C1]
Length = 422
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
gi|422920947|ref|ZP_16954205.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
gi|429885449|ref|ZP_19367038.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
gi|341649742|gb|EGS73692.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
gi|429227802|gb|EKY33784.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
Length = 422
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--RETNSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 540
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG ++ ++ +L + + P+ IQA A P ++ GK I Q+G+GKT A+ LP++
Sbjct: 3 SFSELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFRQ 386
L + + +S RV+IL+PT EL+ Q+L N L K G R + + GG
Sbjct: 63 HLSRNPRRIEPRSC----RVLILSPTRELSGQILDN---LDKFGRHIRLSTTLAIGGVPM 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ LQ GVDVL+ATPGR M L++ L+L + +
Sbjct: 116 GRQIRALQRGVDVLVATPGRLMDLVENNALKLDTVEVF 153
>gi|409405536|ref|ZP_11253998.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386434085|gb|EIJ46910.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 513
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ Q + P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ R +ILAPT ELA+QV + R K +P S + GG
Sbjct: 62 RLSAMPRQKINGHL--PIRALILAPTRELAAQVEESVRQYGKY-LPLTSACIFGGVGIHP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + +++G + L +++
Sbjct: 119 QIALLKRGVDILVATPGRLLDHMQQGTVNLQHIQ 152
>gi|39936732|ref|NP_949008.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris TIE-1]
gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
CGA009]
gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 474
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E G +D + +L+ +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 10 SFQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ SK+ RV++L+PT EL+ Q+L + + + V + + GG
Sbjct: 70 RLLQNRIKPASKTC----RVLVLSPTRELSGQILDSFNAYGRH-VHLSAALAIGGVPMGR 124
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +L GVDVL+ATPGR + L++ L+L + +
Sbjct: 125 QVRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEF 159
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 69 IIQRLLPH------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG Q + L+ GV++LIATPGR +
Sbjct: 122 FGGVDMNPQSDQLRRGVEILIATPGRLL 149
>gi|402823501|ref|ZP_10872924.1| DEAD/DEAH box helicase [Sphingomonas sp. LH128]
gi|402262992|gb|EJU12932.1| DEAD/DEAH box helicase [Sphingomonas sp. LH128]
Length = 461
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++++++ + P+ IQA PPV+ K I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLQAVEAAGYTEPTPIQAQTIPPVLMMKDLIGIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G + + PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 61 -----DILGHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNH-DLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL+ L GVDVLIATPGR M L + G + L
Sbjct: 115 QLKALSAGVDVLIATPGRLMDLFERGKIML 144
>gi|344338388|ref|ZP_08769320.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343801670|gb|EGV19612.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 429
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ Q + RP+ IQ A P ++ G + Q+G+GKT A++LP++Q
Sbjct: 2 SFDSLGLQADLLRAVATQRYARPTPIQLQAIPEILAGHDLLAGAQTGTGKTAAFVLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++ PR +IL PT ELA+QV + +P RS +V GG +
Sbjct: 62 RLSEK------GHPQRHPRALILTPTRELAAQVGERVHAYG-LHLPLRSAIVFGGVGMQP 114
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q+ LQ GVDVLIATPGR +
Sbjct: 115 QVNQLQRGVDVLIATPGRLL 134
>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
alginolyticus 40B]
gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
alginolyticus 40B]
Length = 421
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +IE+L N + P+ +Q + P V+ GK+ + A Q+G+GKT A+ LP+IQ
Sbjct: 8 NFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQ 67
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q++L +G+P+ +IL PT ELA QV N S R + V GG
Sbjct: 68 TVQQKKL-------NGTPQALILVPTRELAQQVFDNLNQYS-AETELRIVCVYGGTSIGV 119
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 120 QKRKLEEGADILIATPGRLL 139
>gi|385209581|ref|ZP_10036449.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385181919|gb|EIF31195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 511
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 32 SFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQ 91
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 92 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIDYGK-GLDLRFLAAYGGVSINP 146
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 147 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 176
>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
Length = 422
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 511
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 95/175 (54%), Gaps = 8/175 (4%)
Query: 244 LQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
L +P P R A + SF LG D ++ +L+ N+ P+ +Q A P V+
Sbjct: 14 LNRKPVSAPTARIAVLARN---TSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVL 70
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
GK + Q+G+GKT + LP++QRL Q QG + S S RV++L PT ELA QVL
Sbjct: 71 GGKDVMAGAQTGTGKTAGFALPLLQRLVQ---QGPAVS-SNRARVLVLVPTRELAEQVLQ 126
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ + K G+ R + GG Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 127 SFVAYGK-GLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLNRQNAVQF 180
>gi|414343639|ref|YP_006985160.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028973|gb|AFW02228.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 417
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 94/154 (61%), Gaps = 8/154 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 46 FAAFGLISPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E S G PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 106 LSKGE------SVHG-PRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 157
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ ++ +GVD+++AT GR + L+ +G L L L +
Sbjct: 158 VRSIVDGVDIVVATHGRLLDLVMQGELVLEYLTY 191
>gi|374724868|gb|EHR76948.1| ATP-dependent RNA helicase RhlE [uncultured marine group II
euryarchaeote]
Length = 455
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 94/156 (60%), Gaps = 6/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ LG S ++ +++ + + P+ +Q + PP++ G+ + Q+G+GKT A+ LPV+Q
Sbjct: 3 NFETLGLSKPLLRAVEAEGYTTPTPVQEQSIPPLLAGRDVLGVAQTGTGKTAAFALPVLQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + +G + R ++L+PT ELA+Q+ + S+ + R V+ GG Q
Sbjct: 63 IMSRNRPEGKRRI-----RALVLSPTRELAAQIDERFSAYSEH-LDIRHKVIFGGVNQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ LQ+G+DVL+ATPGR + LI +G + + N+ ++
Sbjct: 117 QVRALQKGLDVLVATPGRLLDLINQGHIDITNVEFF 152
>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
Length = 535
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E +++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 154 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 213
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q
Sbjct: 214 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTSIKTVRCFGGVPQSC 268
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++ Q G D+ +ATPGR + IK G+ L
Sbjct: 269 QMKDFQSGCDICVATPGRLIDFIKRGVTNL 298
>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 481
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +QA A P V+ GK + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase [Chitinophaga pinensis DSM 2588]
gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
2588]
Length = 492
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++LG + ++++L + + P+ IQ A P V++ + + Q+G+GKT A+ +P++Q
Sbjct: 28 SFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ 87
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ Q++ Q + + + +IL PT ELA Q+ + + K + +S+V+ GG Q
Sbjct: 88 LMHQDQ-QAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKF-LDLKSLVIFGGVSQHP 145
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q E L++GVD+LIATPGR + LI + + L +++++
Sbjct: 146 QTEALKKGVDILIATPGRLLDLISQNYITLRDIKYF 181
>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
Length = 419
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +IE+L N + P+ +Q + P V+ GK+ + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q++L +G+P+ +IL PT ELA QV N S R + V GG
Sbjct: 64 TVQQKKL-------NGTPQALILVPTRELAQQVFDNLNQYS-AETELRIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 116 QKRKLEEGADILIATPGRLL 135
>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
Length = 446
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 12/156 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +++++ + + PS IQA A P V+EG+ + A Q+G+GKT + LP+
Sbjct: 2 SFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPL-- 59
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L GLSK S R ++L PT ELA+QV + K + RS VV GG +
Sbjct: 60 ------LHGLSKGQSAKANQVRALVLTPTRELAAQVAESVDIYGKY-LNLRSAVVFGGVK 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+LIATPGR + L ++ + L
Sbjct: 113 INPQMMRLRKGVDILIATPGRLLDLYQQNAMSFQKL 148
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + +P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N S +K RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTA-LRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q+ L+ GV++LIATPGR +
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLL 149
>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 472
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 86/149 (57%), Gaps = 7/149 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +ILAPT ELA+QV N K + ++ GG + Q
Sbjct: 63 LASGRRRAL------MPRSLILAPTRELAAQVAENFEKYGKQH-DLQLALLIGGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ L EGVDVLIATPGR M L + G + L
Sbjct: 116 VKALNEGVDVLIATPGRLMDLFERGKILL 144
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 94 RLLPH------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GV++LIATPGR + +++ L
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANL 181
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 7/156 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G S ++ +++ + + P+ IQA A P VV G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + +PR ++L PT ELA+QV + RS + +P RS V GG
Sbjct: 62 RL------SAVPTRHRAPRALVLTPTRELAAQVRESVRSYGRH-LPLRSTAVFGGVGINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ L+ GVDV++ATPGR + +++ ++L + +
Sbjct: 115 QISALRSGVDVVVATPGRLLDHLQQRTVELSRVEIF 150
>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
Length = 437
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + + ++++ N+ + IQ A P ++EG+ + ++G+GKT A+ LP++Q+
Sbjct: 3 FKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPILQK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ S+ + + +ILAPT ELA Q+ +S++ V +S V+ GG RQ +Q
Sbjct: 63 LY---LRDESEKYPRTIKALILAPTRELAMQIDETFQSMNSF-VNLKSTVIFGGVRQGSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
+ ++ G+DVLIATPGR L K+G+L L ++ ++
Sbjct: 119 VTKIERGIDVLIATPGRLSDLYKQGLLDLSHIEYFV 154
>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family [Alteromonadales bacterium TW-7]
gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family [Alteromonadales bacterium TW-7]
Length = 433
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LPVIQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + +L ST+ +P ++LAPT ELA Q+ +NC+ +K + + + GG
Sbjct: 62 KLIESDL-----STTNAPTALVLAPTRELAEQIANNCKEYAK-HTSLKVVSLFGGVNTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L+ GVD+++ATPGR + I+ G L L N++
Sbjct: 116 QENALKAGVDIVVATPGRLLDHIRLGNLSLANVK 149
>gi|114563324|ref|YP_750837.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114334617|gb|ABI71999.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 439
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D ++ +L + +P+ IQ P +++GK+ + A Q+G+GKT +++LP+++R
Sbjct: 3 FSTLGLRDTIVNALHEVGYSQPTPIQQQTIPVILKGKNLLAAAQTGTGKTASFVLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E+Q + R +IL PT ELA QV +N +K +P S+ + GG +K Q
Sbjct: 63 LADTEIQRAKRI-----RALILTPTRELAVQVHANVVQYAK-HLPLTSIAIYGGVDEKPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L +GVD+L+ATPGR + L
Sbjct: 117 KQALIDGVDILVATPGRLLDL 137
>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase [Chelativorans sp. BNC1]
gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
Length = 460
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Query: 244 LQYEPTD-CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
+Q+ PT ++R + F +LG S+ ++++ P IQ A PP
Sbjct: 1 MQFAPTHGVERERENRLTKDNILPSGGFADLGISETLLKAAAAAGMTEPKPIQKEAIPPF 60
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQV 361
+ G + Q+GSGKT A+ LP++ + + GL +K + R +IL PT ELA Q+
Sbjct: 61 LAGSDILGVAQTGSGKTAAFSLPILSK-----IIGLGTKRRPRTARALILVPTRELAVQI 115
Query: 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
R L+K G + +V GG + +Q++ + +GVDVLIATPGR L+++G + L
Sbjct: 116 EKVVRELAK-GAHVSTALVLGGVSRHSQIKRMAQGVDVLIATPGRLTDLVRDGAVVLSET 174
Query: 422 RWY 424
W
Sbjct: 175 TWL 177
>gi|94309401|ref|YP_582611.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 540
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQ--GLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L + + G + P R ++L PT ELA+QV + R+ K + RSMV+ GG
Sbjct: 62 LLSETAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKY-LKLRSMVMFGGV 120
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E L+ GVD+++ATPGR + + + + L
Sbjct: 121 GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDL 154
>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
Length = 422
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--RETNSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|423113365|ref|ZP_17101056.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
gi|376388734|gb|EHT01427.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5245]
Length = 454
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYVEPTSIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLIQKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNVRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRSGVDILVATPGRLLDL 139
>gi|384156092|ref|YP_005538907.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345469646|dbj|BAK71097.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 435
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++K + + P+ IQ+ + P ++ K + A Q+G+GKT + LP++Q
Sbjct: 2 SFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL+ L K R +IL PT ELA+QV + + K +PF+S V+ GG
Sbjct: 62 RLKDSNL----KDKKTQVRALILTPTRELAAQVAQSVETYGKY-LPFKSAVIFGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++GVD++IATPGR + LI + L L + +
Sbjct: 117 QKALLKKGVDIIIATPGRLLDLISQDSLDLSKIEF 151
>gi|317124438|ref|YP_004098550.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315588526|gb|ADU47823.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 807
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++E L R P IQA P + GK + Q+GSGKTLA+ LP+I R
Sbjct: 342 FAALGLSERLVERLARDGITAPFPIQAATIPDALAGKDVLGRGQTGSGKTLAFGLPMITR 401
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L+ + P ++L PT ELA QV L R +V GG TQ
Sbjct: 402 LVEAGLRRAPR----RPHALVLVPTRELAMQVSDALEPLVHVAG-LRHKLVAGGLSYTTQ 456
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ L +GVD+LIATPGR L++ G ++L ++R
Sbjct: 457 IAALNKGVDILIATPGRLNDLLERGAVELDDIR 489
>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 489
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ ++K + + PS IQ A P V+ G+ + A Q+G+GKT + LP++
Sbjct: 2 SFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + S + R ++L PT ELA+QV + + K +P +S+VV GG
Sbjct: 62 RLSRG-----NPARSNAVRALVLTPTRELAAQVAESVTTYGKY-LPLKSVVVFGGVNINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ +++G DVL+ATPGR + L+ + L L
Sbjct: 116 QMLAMRKGADVLVATPGRLLDLVSQNALHFRQL 148
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++K + + P+ IQ+ + P ++ K + A Q+G+GKT + LP++Q
Sbjct: 2 SFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL+ L K R +IL PT ELA+QV + + K +PF+S V+ GG
Sbjct: 62 RLKDSNL----KDKKTQVRALILTPTRELAAQVAQSVETYGKY-LPFKSAVIFGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++GVD++IATPGR + LI + L L + +
Sbjct: 117 QKALLKKGVDIIIATPGRLLDLISQDSLDLSKIEF 151
>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
Length = 781
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F EL + ++ ++ RP+ IQ A P ++E + + Q+GSGKT A+L+P+I
Sbjct: 184 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 243
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++L S + P+ +ILAPT ELA Q+LS + S P RS VV GG
Sbjct: 244 NHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS-LNTPLRSCVVYGGADTH 302
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+Q+ +Q G +L+ATPGR + I++ + L
Sbjct: 303 SQIREVQMGCHLLVATPGRLVDFIEKNKISL 333
>gi|395215483|ref|ZP_10400949.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394455827|gb|EJF10233.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 476
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 8/157 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++++L+ + + +P+ IQ A P ++ G + Q+G+GKT A+ +PV+Q
Sbjct: 2 TFSELNLIDPILKALQAEGYTQPTPIQEQAIPHLLAGTDVLGCAQTGTGKTAAFAIPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQK 387
L ++ S + + +IL PT ELA Q+ + + K GV R V+ GG Q
Sbjct: 62 MLHNQK-----NRASNTIKTLILTPTRELAIQINESFAAYGKNTGV--RHTVIFGGVSQH 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L+ GVDVLIATPGR + LI +G + L ++ ++
Sbjct: 115 AQVQTLKRGVDVLIATPGRLLDLIGQGFISLKHVEFF 151
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 18/159 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ +G SD ++ L+ F +P++IQ+ A P ++EG+ + Q+G+GKT AY LP ++
Sbjct: 4 SFQTIGLSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLE 63
Query: 329 R--LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT--GGF 384
+ L Q+ +QGL IL PT ELA QV +SL + V R V+T GG
Sbjct: 64 KIDLEQKTVQGL-----------ILTPTRELAVQV---TQSLKEFAVDRRLWVLTVCGGQ 109
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ Q+ +LQ+GV +++ TPGR + L++ G L LRW
Sbjct: 110 SMERQIRSLQKGVHIVVGTPGRVIDLLERGKLSFEELRW 148
>gi|407041201|gb|EKE40586.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 523
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E ++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 142 TFEECNFPQSILNVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 201
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q +
Sbjct: 202 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTSIKTVRCFGGVPQSS 256
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++ Q G D+ +ATPGR + IK G+ L
Sbjct: 257 QMKDFQSGCDICVATPGRLIDFIKRGVTSL 286
>gi|359448696|ref|ZP_09238216.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20480]
gi|358045506|dbj|GAA74465.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20480]
Length = 433
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LPVIQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKGVLASAQTGTGKTAAFALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + +L ST+ +P ++LAPT ELA Q+ +NC+ +K + + + GG
Sbjct: 62 KLIESDL-----STTNAPTALVLAPTRELAEQIANNCKEYAK-HTSLKVVSLFGGVNTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L+ GVD+++ATPGR + I+ G L L N++
Sbjct: 116 QENALKAGVDIVVATPGRLLDHIRLGNLSLANVK 149
>gi|333985547|ref|YP_004514757.1| DEAD/DEAH box helicase [Methylomonas methanica MC09]
gi|333809588|gb|AEG02258.1| DEAD/DEAH box helicase domain protein [Methylomonas methanica MC09]
Length = 431
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S+ +++++ Q + P+ IQA A P +++G+ + Q+G+GKT + LP++Q
Sbjct: 3 FSELALSEQLLQAVAEQGYQTPTPIQAQAIPVILQGRDVLAGAQTGTGKTAGFTLPLLQI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + RV+IL PT ELA QV + R+ K +PF + + GG Q
Sbjct: 63 LHSQAIPQKPRPV----RVLILTPTRELAMQVYESVRTYGKH-LPFFAEAIYGGVSINPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ +Q G D++IATPGR + LI + L L +++ +
Sbjct: 118 IQKIQRGTDIVIATPGRLLDLIHQQHLSLSHVQHF 152
>gi|411009458|ref|ZP_11385787.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 459
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ ++ G+D+L+ATPGR + L+ +G L L L
Sbjct: 116 NLDAIKLGIDILVATPGRLLDLLTQGALTLTEL 148
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++ +L ++ + P+ IQA + P +++GK + Q+G+GKT A+ LP++ R
Sbjct: 4 FSELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPILDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + +++ G+ RV++LAPT ELA+Q+ + R+ + + R+ VV GG Q
Sbjct: 64 LSKSQ----TRTPKGACRVLVLAPTRELAAQIGESFRAYGRF-LNVRTAVVVGGVAPGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ + GV+VL+ATPGR + + G L L
Sbjct: 119 IKAITPGVEVLVATPGRLLDHVDSGKLSL 147
>gi|383758280|ref|YP_005437265.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381378949|dbj|BAL95766.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 466
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +++ Q + P+ IQA A P V++G + Q+G+GKT + LP++Q
Sbjct: 2 NFTDLGLAEPLLRAVRDQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + S+ + R ++L PT ELA+QV + R+ K +P SMV+ GG +
Sbjct: 62 RLSASKPVRDSRGRI-AVRALVLTPTRELAAQVEESVRAYGKY-LPLTSMVMFGGVGMQP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q++ L++GVD+L+ATPGR + +G L L N++
Sbjct: 120 QIDRLKKGVDILVATPGRLLDHHGQGTLDLSNVQ 153
>gi|291230496|ref|XP_002735194.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28-like
[Saccoglossus kowalevskii]
Length = 543
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 13/218 (5%)
Query: 215 SDYNSRSNKHE---KSGTKIDRGW---RSGG---SIHNLQYEPTDCPKQRHKYSADGDFF 265
++Y+ N+H K +GW RS G +I+N + P PK+ + S +
Sbjct: 72 TEYSHYVNQHFNKFKPTRLASQGWKHSRSCGDHFTINNTRGNPA-FPKKSDQGSEHNE-- 128
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF + + +I L +P+ +Q + P V+ G + + A ++GSGKTL+YLLP
Sbjct: 129 SVTSFSDFHLHESLINGLASMEIEQPTNVQILTIPQVMRGHNVLCAAETGSGKTLSYLLP 188
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ +++ E + KS G PR ++L P ELA QVL+ R LSK + +V GG R
Sbjct: 189 MLHQMKTETEKLGMKSAVGLPRALVLLPARELAEQVLAVARRLSKF-TELSANIVEGGRR 247
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
KT +D+++ATPG + + G + + N+R+
Sbjct: 248 HKTLHSTSDSPLDLMVATPGALLKCVTSGWIHMDNVRY 285
>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 460
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ +L ++ P+ IQA P ++G + A Q+G+GKT A+ LP+IQ
Sbjct: 3 TFAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQ 62
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL S S + P R +IL PT ELA QV ++ +K VP RS+VV GG
Sbjct: 63 RLL--PFANTSTSPAKHPIRALILTPTRELAIQVEEAIQAYTKH-VPLRSLVVYGGVNIN 119
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
TQ+ L+ GV++L+ATPGR + ++ L L +
Sbjct: 120 TQIPILKTGVEILVATPGRLLDHVQNKTLMLTQV 153
>gi|431928590|ref|YP_007241624.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431826877|gb|AGA87994.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 441
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +Q A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L++G+DVL+ATPGR + L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQ 141
>gi|409202975|ref|ZP_11231178.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 473
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + + +++ Q + RP+ IQ A P ++EG+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSHLGLAPEINQAVVEQGYDRPTPIQEQAIPAILEGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + G +K + + R +IL PT ELA QV + SK +P S VV GG +
Sbjct: 62 KL----IAG-TKPRANNVRALILTPTRELADQVWQSVALYSKH-LPISSEVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++G+DVL+ATPGR + L ++ ++ +L
Sbjct: 116 QMMKLRKGIDVLVATPGRLLDLYQQNAVKFDDL 148
>gi|389841642|ref|YP_006343726.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
gi|387852118|gb|AFK00216.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
Length = 474
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTANQPHPKGRRPV---RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 616
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 5 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N R +K + S V+ GG K
Sbjct: 65 RLASGTAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKY-LDITSTVIFGGVGMKP 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +++GVDVL+ATPGR + L +G + L
Sbjct: 123 QIARIEKGVDVLVATPGRLLDLAGQGFMDL 152
>gi|418300341|ref|ZP_12912167.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355533754|gb|EHH03074.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 490
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + + + R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQA----DRPANRTCRTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G D+L+ATPGR + LI + L + +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTY 152
>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
Length = 526
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNQVRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ L++G DVL+ATPGR + L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLLDLYNQNAVKFDQLEM 150
>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 613
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N R +K + S V+ GG K
Sbjct: 62 RLASGTAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKY-LDITSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +++GVDVL+ATPGR + L +G + L
Sbjct: 120 QIARIEKGVDVLVATPGRLLDLAGQGFMDL 149
>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
Length = 613
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N R +K + S V+ GG K
Sbjct: 62 RLASGAAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKY-LDITSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +++GVDVL+ATPGR + L +G + L
Sbjct: 120 QIARIEKGVDVLVATPGRLLDLAGQGFMDL 149
>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 435
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 92/161 (57%), Gaps = 5/161 (3%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F+ FK+L ++++L+ + P+ IQ A P + + K + Q+G+GKT A+ +
Sbjct: 15 FNNLQFKDLKLIAPILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAI 74
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++Q L + K+ R ++L PT ELA Q+ N + SK +P R++V+ GG
Sbjct: 75 PILQMLTYSK----EKTAQKRIRTLVLTPTRELAIQIKENFDAYSK-ELPIRNLVIYGGV 129
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ Q + L++G+D+LIATPGR + L +G + L L ++
Sbjct: 130 GQQPQRDALRKGIDILIATPGRLLDLYNQGFIDLKQLEYFV 170
>gi|156357705|ref|XP_001624354.1| predicted protein [Nematostella vectensis]
gi|156211127|gb|EDO32254.1| predicted protein [Nematostella vectensis]
Length = 349
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++++L N +P+ IQ + P ++ I A Q+GSGKTLAYL P++
Sbjct: 3 SFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLR++E + + PR I+ P ELA+Q+L +SL FRS+ + GG +QK
Sbjct: 63 RLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH-HARFRSVGLIGGRKQKW 121
Query: 389 QLENLQEGVDVLIATPGRFM 408
++L+ VD+L+ATPG +
Sbjct: 122 MRDDLESPVDLLVATPGTLL 141
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 12/150 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPH------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GV++LIATPGR + +++
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQ 154
>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 476
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P +++G + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + + KS R+++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDQFKKRAMPKSC----RILVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ + GVDVL+ATPGR + LI++G ++L
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIEQGAIRL 148
>gi|337278789|ref|YP_004618260.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729865|gb|AEG92241.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 606
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 94/160 (58%), Gaps = 4/160 (2%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
+ DG F +F EL + ++++++ Q + P+ IQA A P V+EG + Q+G+GK
Sbjct: 4 ATDGAHFM--TFDELKLAPAILKAVREQGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGK 61
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
T A+ LP++ +L + + + +K ++L PT ELA+QV + R+ K +P S
Sbjct: 62 TAAFTLPMLHKLTKGQGK-TNKFGKDGIAALVLTPTRELAAQVEESIRTYGKY-LPLTST 119
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
V+ GG Q++ ++ GVD+L+ATPGR + L ++G L L
Sbjct: 120 VIFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGHLDL 159
>gi|424031298|ref|ZP_17770749.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|408878668|gb|EKM17662.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
Length = 526
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 20/161 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L S PRV ++L PT ELA+QV N S+ +P S VV G
Sbjct: 63 L------------SNGPRVRGNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
G + Q+ L++G DVL+ATPGR M L + ++ L
Sbjct: 110 GVKINPQMLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEM 150
>gi|392422527|ref|YP_006459131.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
gi|390984715|gb|AFM34708.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
Length = 441
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +Q A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L++G+DVL+ATPGR + L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQ 141
>gi|398896410|ref|ZP_10647539.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398178670|gb|EJM66315.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
Length = 445
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL++ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAVPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K T+ S R +IL PT ELA QV R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVTANSVRALILVPTRELAEQVHEAVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRSGVDLLVATPGRLLDLFRQNALKFNQLQ 150
>gi|350533821|ref|ZP_08912762.1| hypothetical protein VrotD_21958 [Vibrio rotiferianus DAT722]
Length = 520
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNQVRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ L++G DVL+ATPGR + L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLLDLYNQNAVKFDQLEM 150
>gi|345493220|ref|XP_001605420.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 1
[Nasonia vitripennis]
Length = 777
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++E +++Q FL P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 110 FPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYIL 169
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P + + S P V++LAPT ELA Q+ S R S C R+ + G
Sbjct: 170 PATVHINNQP----RLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSC---IRNTCIFG 222
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
G + Q +L+ GV++ IATPGR + ++ G L
Sbjct: 223 GSPKGPQARDLERGVEICIATPGRLIDFLERGTTNL 258
>gi|427785439|gb|JAA58171.1| Putative atp-dependent rna helicase ddx54 [Rhipicephalus
pulchellus]
Length = 816
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 8/154 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S +++ + ++ + +P+ IQ A P V+EG+ + ++GSGKT A+L+P+++R
Sbjct: 58 FQAMGLSHAILKGILKRGYKQPTPIQRKAIPVVLEGRDVVAMARTGSGKTAAFLVPILER 117
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +S PR +IL+PT ELA Q + L K RS V+ GG + Q
Sbjct: 118 LG-------GRSPHTGPRALILSPTRELALQTHKFAKELGKF-TDLRSTVILGGDSMEDQ 169
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
E + E D+LIATPGRF+ ++ E L+L ++++
Sbjct: 170 FEAIHENPDLLIATPGRFLHVVMEMNLRLNSVKY 203
>gi|341892501|gb|EGT48436.1| hypothetical protein CAEBREN_12320 [Caenorhabditis brenneri]
Length = 503
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 269 SFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
SF++ G + ++ +K+ F +PS IQA +P ++ G+ CI Q+GSGKTLA+LLP
Sbjct: 85 SFEQAFGSNQAIMNEIKKNGFDKPSPIQAQMWPILLSGQDCIGVSQTGSGKTLAFLLPAF 144
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + Q + SP V++L+PT ELA Q+ + S G ++S+ + GG +K
Sbjct: 145 LHIDAQYKQYEANEKKPSPSVLVLSPTRELAQQIEGEVQKYSYNG--YKSVCLYGGGSRK 202
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+++ + G++++IATPGR L +G++ L ++ +
Sbjct: 203 DQVDSCKGGIEIVIATPGRLTDLSNDGVISLASVTY 238
>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
BAA-894]
gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
Length = 474
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTANQPHPKGRRPV---RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|429211643|ref|ZP_19202808.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428156125|gb|EKX02673.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 443
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ +L + P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAALGLIEPLLRALDGLGYQNPTPVQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L QE Q + S R ++L PT ELA QV + R+ + VP R+ V GG
Sbjct: 62 KLLQEGPQ----VAANSVRALVLVPTRELAEQVHDSFRAYGQH-VPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVDVL+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNALKFTQLQ 150
>gi|398852711|ref|ZP_10609359.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398243285|gb|EJN28876.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 445
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL+ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K + S R +IL PT ELA QV + R ++ +P R+ V GG
Sbjct: 62 LLSMEG----PKVAANSARALILVPTRELAEQVHESVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVDVL+ATPGR + L ++ L+L L+
Sbjct: 117 QMMKLRGGVDVLVATPGRLIDLFRQNALKLDQLQ 150
>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
Length = 392
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 100/163 (61%), Gaps = 19/163 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L ++ ++++++ + ++ P+ IQA A P ++ GK + Q+G+GKT A+ +P+IQ
Sbjct: 22 TFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQ 81
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC-----RSLSKC-GVPFRSMVVTG 382
+L+ + ++ + S + +IL PT ELA Q+ S C R C GV F G
Sbjct: 82 QLQAD------RNLNKSIKALILTPTRELALQI-SECIDDYARYTQVCHGVIF------G 128
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
G Q+TQ+ L +GVD+L+ATPGR + L+ +G ++L N++ +
Sbjct: 129 GVNQRTQVNMLHKGVDILVATPGRLLDLMNQGYVRLNNIQHFV 171
>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
14365]
Length = 497
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG S+ ++ ++ + + IQ A PP ++G+ + Q+G+GKT A+ LP++QR
Sbjct: 3 FQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPILQR 62
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E G ++ G+ R +I+ PT ELA+Q+ + + + +P R+ V+ GG Q
Sbjct: 63 L-AETGDGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGR-HLPLRNTVIFGGVNQN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L+ G+D+L+ATPGR + L+ +G + L L +
Sbjct: 121 RQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVF 157
>gi|339444742|ref|YP_004710746.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
gi|338904494|dbj|BAK44345.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
Length = 504
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 90/149 (60%), Gaps = 8/149 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S+++++++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP + R
Sbjct: 4 FNELGLSEHVLQAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ G +K G P ++++ PT ELA Q+ C +++ R + V GG + Q
Sbjct: 64 V------GHAKGGQG-PLMLVVTPTRELAQQIGEVCSAIA-VSTHHRILTVVGGLSYEPQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ L+ GVD+LIATPGR + L+++G ++L
Sbjct: 116 ISKLKHGVDILIATPGRLVDLMEQGAVRL 144
>gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 1/124 (0%)
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
P++IQ + P V+EG+S +L +GSGKTLAY+LP++Q LR++E PR V+
Sbjct: 12 PTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQLLRRDEALSGVLMKPRRPRAVV 71
Query: 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL 410
L PT EL+ QV +S+S FRS +V+GG R + Q ++L +D+++ TPGR +
Sbjct: 72 LCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNIPIDMVVGTPGRVLQH 130
Query: 411 IKEG 414
I+EG
Sbjct: 131 IEEG 134
>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
Length = 450
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 97/155 (62%), Gaps = 9/155 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ + ++ ++ + P++IQ A PV+ G+ + Q+G+GKT A++LP++
Sbjct: 4 SFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLM 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ + + + R +IL+PT ELA Q+ + + SK + R++V+ GG KT
Sbjct: 64 KLKYAQGKDM--------RALILSPTRELAMQIEEHIQLFSKY-LDLRTVVLYGGLGPKT 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ENL++GVD+++ATPGRF+ L EG + + +L++
Sbjct: 115 QIENLEKGVDIIVATPGRFLDLYLEGHINVKSLKF 149
>gi|429122441|ref|ZP_19183020.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
gi|426323043|emb|CCK13757.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
Length = 467
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTANQPHPKGRRPV---RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|392541962|ref|ZP_10289099.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 427
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + ++++L+ NF + IQ A P V +G + Q+G+GKT A+ LP+IQ
Sbjct: 3 TFSSFSFAQPLLDALQDINFHTLTPIQQAAIPAVRQGSDVLATAQTGTGKTAAFALPIIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + E Q +PR +ILAPT ELA Q+ +NC + +K + + GG
Sbjct: 63 KLLEAEAQ-------STPRALILAPTRELAEQIANNCATFAKY-TDLKVQALFGGVNANG 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q E L++GVD+L+ATPGR + I+ G + L N++
Sbjct: 115 QAERLKQGVDILVATPGRLLDHIRLGNVTLSNVK 148
>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea
blandensis MED297]
gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
MED297]
Length = 433
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 5/141 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL +D +++++ Q + P+ IQA P V+ G+ + A Q+G+GKT + LP+IQ
Sbjct: 3 FSELALADPILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIIQH 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + RV++L PT ELA+QV N + +K RS VV GG + Q
Sbjct: 63 LITEN----RPVKANRCRVLVLTPTRELAAQVEDNVTAYAKY-TDVRSEVVFGGVKINPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFL 410
++ L+ GVD+L+ATPGR + L
Sbjct: 118 MQKLRRGVDILVATPGRLLDL 138
>gi|424038258|ref|ZP_17776881.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
gi|408894595|gb|EKM31248.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
Length = 521
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 20/161 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L S PRV ++L PT ELA+QV N S+ +P S VV G
Sbjct: 63 L------------SNGPRVRGNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
G + Q+ L++G DVL+ATPGR M L + ++ L
Sbjct: 110 GVKINPQMLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEM 150
>gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205]
Length = 436
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
D + + F LG ++E++ ++ + +PS IQ P V+ G+ + A Q+G+GKT
Sbjct: 6 DEEQLAESPFTALGLGRPIVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTA 65
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+ LP+++RLR + R ++L PT ELA+QV N ++ S+ + RS VV
Sbjct: 66 GFTLPMLERLRHG-----PHARGRIVRSLVLTPTRELAAQVADNVKAYSR-HLDLRSDVV 119
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
GG + Q+ LQ G D+L+ATPGR M L+++G + L
Sbjct: 120 FGGVKINPQITRLQAGADMLVATPGRLMDLVQQGAISL 157
>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Bermanella marisrubri]
gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
Length = 457
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 82/141 (58%), Gaps = 5/141 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++++ Q + P+ IQA P V+ G+ + A Q+G+GKT + LP++Q+
Sbjct: 3 FTDLALAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPILQK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L RV++L PT ELA+QV N + SK RS VV GG + Q
Sbjct: 63 L----LDAPKGVKPNQARVLVLTPTRELAAQVQDNVATYSKY-TKIRSEVVFGGVKINPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFL 410
++ L+ GVD+L+ATPGR + L
Sbjct: 118 MQRLRRGVDILVATPGRLLDL 138
>gi|403268867|ref|XP_003926484.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Saimiri
boliviensis boliviensis]
Length = 586
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++E++K+ F +P+ IQA A+P V++G I Q+G+GKTL YL+P L +LQ
Sbjct: 191 VMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---DLQPT 247
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K P +++L PT ELA QV C S G FRS+ V GG + Q+E L++GVD
Sbjct: 248 VKGQRNRPGMLVLTPTRELALQVEGECGKYSYKG--FRSVCVYGGGSRDEQIEELRKGVD 305
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
++IATPGR L + L N+ +
Sbjct: 306 IIIATPGRLNDLQMNNFVNLKNITY 330
>gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 450
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 98/157 (62%), Gaps = 9/157 (5%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+ SF++ + ++ ++ + P++IQ A PV+ G+ + Q+G+GKT A++LP+
Sbjct: 2 QNSFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPM 61
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ +L+ + + + R +IL+PT ELA Q+ + + SK + R++V+ GG
Sbjct: 62 LMKLKYAQGKDM--------RALILSPTRELAMQIEEHIQLFSKY-LDLRTVVLYGGLGP 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
KTQ+ENL++GVD+++ATPGRF+ L EG + + +L++
Sbjct: 113 KTQIENLEKGVDIIVATPGRFLDLYLEGHINVKSLKF 149
>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
Length = 549
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 3 TFKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ R +IL PT ELA+QV + + K + S VV GG +
Sbjct: 63 LLSAGK-----RAQPNQVRTLILTPTRELAAQVGESVATYGKH-MSLSSAVVFGGVKINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L + ++ L
Sbjct: 117 QMMKLRRGVDVLVATPGRLMDLYSQNAVKFTYL 149
>gi|384172779|ref|YP_005554156.1| ATP-dependent RNA helicase [Arcobacter sp. L]
gi|345472389|dbj|BAK73839.1| ATP-dependent RNA helicase [Arcobacter sp. L]
Length = 448
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 12/158 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++K + + P+ IQA + P ++ K + Q+G+GKT + LP++Q
Sbjct: 2 SFSKLGLCSEILRAIKEEGYTTPTPIQAQSIPVILLKKDVLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
R L+KSTS P+ +IL PT ELA+QV + + K +PF+S V+ GG
Sbjct: 62 R--------LTKSTSKDSKYPKALILTPTRELAAQVAQSVETYGKY-LPFKSAVIFGGVG 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++GVD++IATPGR + LI + L L + +
Sbjct: 113 INPQKALLKKGVDIIIATPGRLLDLISQDSLNLSKIEF 150
>gi|334320464|ref|YP_004557093.1| DEAD/DEAH box helicase [Sinorhizobium meliloti AK83]
gi|384538673|ref|YP_005722757.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407723120|ref|YP_006842781.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
gi|334098203|gb|AEG56213.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
gi|336037326|gb|AEH83256.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407323180|emb|CCM71781.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
Length = 504
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L GVD+L+ATPGR + L+ + L R+
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARY 152
>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
43183]
gi|167700298|gb|EDS16877.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 372
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 7/157 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L ++ ++++++ + + P+ IQ A P + GK + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L+ + K+ S + +IL PT ELA Q+ S C R V+ GG Q+
Sbjct: 62 HLQ------VLKNRDKSIKALILTPTRELALQI-SECIDDYAKYTQVRHGVIFGGVNQRA 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ L +GVD+L+ATPGR + L+ +G + L N+R +
Sbjct: 115 QVNMLHKGVDILVATPGRLLDLMNQGYIHLDNVRHFV 151
>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|452120973|ref|YP_007471221.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|451909977|gb|AGF81783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 453
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +L + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITHQLHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|402483737|gb|AFQ59989.1| RhlE [Photorhabdus luminescens]
Length = 428
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ LG S ++ +++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 NFESLGLSADILRAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +Q + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLNDSSIQVKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LRLRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L + + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDL 147
>gi|345493222|ref|XP_003427025.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 2
[Nasonia vitripennis]
Length = 710
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++E +++Q FL P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 43 FPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYIL 102
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P + + S P V++LAPT ELA Q+ S R S C R+ + G
Sbjct: 103 PATVHINNQP----RLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSC---IRNTCIFG 155
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
G + Q +L+ GV++ IATPGR + ++ G L
Sbjct: 156 GSPKGPQARDLERGVEICIATPGRLIDFLERGTTNL 191
>gi|16264922|ref|NP_437714.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
1021]
Length = 503
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L GVD+L+ATPGR + L+ + L R+
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARY 152
>gi|433610674|ref|YP_007194135.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|429555616|gb|AGA10536.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 504
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L GVD+L+ATPGR + L+ + L R+
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARY 152
>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
Length = 414
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D++ ++L + + P+ IQ A P ++EG + Q+G+GKT A+ LPV+QR
Sbjct: 3 FSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + G + R ++L PT ELA Q+ + + + + V+ GG Q Q
Sbjct: 63 LHQSRMHGEKRKI----RCLVLTPTRELAIQIGESFTAYGR-HTGLINTVIFGGVNQNPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
L GVD+L+ATPGR + LI +G L L ++ ++
Sbjct: 118 TARLVRGVDILVATPGRLLDLIGQGHLHLRDIEYFV 153
>gi|384532968|ref|YP_005715632.1| DEAD/DEAH box helicase [Sinorhizobium meliloti BL225C]
gi|333815144|gb|AEG07811.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
BL225C]
Length = 504
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L GVD+L+ATPGR + L+ + L R+
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARY 152
>gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 427
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + +P+ +QA A P +++G + A Q+G+GKT + LP+++
Sbjct: 2 SFDSLGLSAVLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPMLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +G + R +IL PT ELA+QV + ++ +P ++ V+ GG
Sbjct: 62 RLSQNRPEGGRRRV----RALILTPTRELAAQVRDSVKTYG-GKLPLKTAVIFGGVGMNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L+ GVD+++ATPGR + + +G + L
Sbjct: 117 QIQTLRRGVDIVVATPGRLLDHMGQGTVDL 146
>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++++++Q + PS IQA A P V+ G+ + A Q+G+GKT + LP+++
Sbjct: 2 SFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E ++ G R ++L PT ELA+QV + + +P +S VV GG
Sbjct: 62 LLSKGE-----RAQRGQVRALVLTPTRELAAQVQESVATYG-VNLPLKSAVVFGGVSIVP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
QL L+ GVD+L+ATPGR + L ++ + L
Sbjct: 116 QLAALRNGVDILVATPGRLLDLCQQKAISFSKL 148
>gi|348681955|gb|EGZ21771.1| hypothetical protein PHYSODRAFT_350808 [Phytophthora sojae]
Length = 491
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 89/162 (54%), Gaps = 12/162 (7%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
FF+ +SF++LG ++ L+ P+ IQ+ + P ++E + A Q+G+GKTLAYL
Sbjct: 30 FFAAQSFQDLGVDARIVAGLREMKITTPTGIQSKSIPAILERHDVLCAAQTGTGKTLAYL 89
Query: 324 LPVIQRLRQEE-----------LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
+PV+++L ++E L G ++ G PR ++L P+ ELA QV S + LS
Sbjct: 90 VPVVEQLLRKEAAMQKEHEAKGLTGPAEVVLGRPRALVLLPSRELALQVASVAKQLSHSA 149
Query: 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG 414
F S +T G R+ Q N +D++I TPGR I +G
Sbjct: 150 -KFASCTITSGERKSIQQRNTARRLDLIIGTPGRVAKCISKG 190
>gi|423128237|ref|ZP_17115916.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
gi|376393593|gb|EHT06249.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
Length = 449
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLVQKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNVRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRSGVDILVATPGRLLDL 139
>gi|418404623|ref|ZP_12978074.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
gi|359501422|gb|EHK74033.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
Length = 504
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L GVD+L+ATPGR + L+ + L R+
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARY 152
>gi|424045995|ref|ZP_17783558.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
gi|408885826|gb|EKM24535.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
Length = 516
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNQVRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ L++G DVL+ATPGR + L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLLDLYNQNAVKFDQLEM 150
>gi|375259807|ref|YP_005018977.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|397656870|ref|YP_006497572.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402843597|ref|ZP_10891991.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
gi|423102058|ref|ZP_17089760.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|365909285|gb|AEX04738.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca KCTC 1686]
gi|376389954|gb|EHT02641.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5242]
gi|394345401|gb|AFN31522.1| ATP-dependent RNA helicase RhlE [Klebsiella oxytoca E718]
gi|402276707|gb|EJU25808.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. OBRC7]
Length = 449
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLIQKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNVRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRSGVDILVATPGRLLDL 139
>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
Length = 435
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 5/161 (3%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F+ FK+L ++++L + P+ IQ A P + + K + Q+G+GKT A+ +
Sbjct: 15 FNNLQFKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAI 74
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++Q L + K+ R ++L PT ELA Q+ N + SK +P R++V+ GG
Sbjct: 75 PILQMLTYSK----EKTAQKRIRTLVLTPTRELAIQIKENFDAYSK-ELPIRNLVIYGGV 129
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ Q + L++G+D+LIATPGR + L +G + L L ++
Sbjct: 130 GQQPQRDALRKGIDILIATPGRLLDLYNQGFIDLKQLEYFV 170
>gi|409200626|ref|ZP_11228829.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 427
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + ++++L+ NF + IQ A P V +G + Q+G+GKT A+ LP+IQ
Sbjct: 3 TFSSFSFAQPLLDALQDINFHTLTPIQQAAIPAVRQGSDVLATAQTGTGKTAAFALPIIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + E Q +PR +ILAPT ELA Q+ +NC + +K + + GG
Sbjct: 63 KLLEAEAQ-------STPRALILAPTRELAEQIANNCATFAKY-TDLKVQALFGGVNANG 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q E L++GVD+L+ATPGR + I+ G + L N++
Sbjct: 115 QAERLKQGVDILVATPGRLLDHIRLGNVTLSNVK 148
>gi|410462897|ref|ZP_11316448.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983996|gb|EKO40334.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 501
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 7/153 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF D +I ++KR + P+ IQA A P V+EG+ + Q+G+GKT A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGRDLMGLAQTGTGKTAAFLLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + SPR +ILAPT ELA Q+ + + G R+ V+ GG
Sbjct: 62 RLL------TTPARTRSPRTLILAPTRELAEQIFRSTLDFMR-GTRLRATVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDV++A PGR + + +G ++ L
Sbjct: 115 QVRALRQGVDVIVACPGRLLDHLNQGNVRFDGL 147
>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 449
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +D ++ ++ + P+ IQA A P V+ G + Q+G+GKT + LP++
Sbjct: 2 SFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL S S R ++L PT ELA+QV + R+ SK + S V+ GG
Sbjct: 62 RLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKY-LNLNSAVIFGGVGINP 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L+ GVD+L+ATPGR + +++G + L
Sbjct: 121 QIKLLKHGVDILVATPGRLLDHMQQGTVNL 150
>gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal
[Mariprofundus ferrooxydans PV-1]
gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal
[Mariprofundus ferrooxydans PV-1]
Length = 426
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++LG S ++ ++ Q + P+ +QA + P ++ G + Q+G+GKT + LP++Q
Sbjct: 2 SFEKLGLSADLLRAVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + + +S + R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LMHKTHPE---RSRNHPIRALVLTPTRELAAQVGESIATYGKY-LPLRSTVVFGGVGINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ LQ GVD+L+ATPGR + LI +G L ++ ++
Sbjct: 118 QIQKLQRGVDILVATPGRLLDLIGQGKANLGHVEFF 153
>gi|333997528|ref|YP_004530140.1| dead/deah box helicase domain-containing protein [Treponema
primitia ZAS-2]
gi|333740699|gb|AEF86189.1| dead/deah box helicase domain protein [Treponema primitia ZAS-2]
Length = 622
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 11/156 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQ 328
F G SD ++ +L R+ F PS IQ++A P ++ + I+ ++G+GKT A+ +P+++
Sbjct: 9 FSSFGLSDDILAALTRKGFTAPSSIQSIALPRLLANQGHLIVKARTGTGKTAAFGIPLVE 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLRQ + +P+ +IL PT ELA QV SL+ +P R V GG ++
Sbjct: 69 RLRQ---------SGHAPKALILTPTRELALQVSREIASLASSPIP-RITAVYGGASIRS 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ +L+ G ++++ TPGR M L++ +L L + W+
Sbjct: 119 QILDLKRGTEIVVGTPGRVMDLMERKVLDLSAIEWF 154
>gi|375107094|ref|ZP_09753355.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374667825|gb|EHR72610.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 457
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L + + P+ +QA A P + G+ +++ Q+GSGKT A++LP +Q
Sbjct: 27 AFAQLGLAKELLFALDKAGYTEPTPVQAAAIGPALAGRDLLVSAQTGSGKTAAFVLPALQ 86
Query: 329 RL---RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
R+ R++ Q K PRV++LAPT ELA QV + + R + GG
Sbjct: 87 RILEARRDPAQRRPKGQVSGPRVLVLAPTRELAQQVTQAAVTYGRGVQGLRVASLVGGVP 146
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEG 414
QL+ L+ +D+LIATPGR M L+ G
Sbjct: 147 YHAQLKALRGPLDILIATPGRLMDLMGSG 175
>gi|403350942|gb|EJY74950.1| RNA helicase, putative [Oxytricha trifallax]
Length = 644
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 99/178 (55%), Gaps = 13/178 (7%)
Query: 269 SFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+F+E Y++E+L++Q NF++PS IQ+ +P + G+ + ++GSGKTL++LLP I
Sbjct: 65 TFEEAKFPKYIMETLQQQENFVKPSAIQSQGWPVALSGRDMVGIAETGSGKTLSFLLPGI 124
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQ 386
+ +E+ + P V+++APT EL Q+ CR ++ C + + + GG +
Sbjct: 125 VHVNAQEML----ESGDGPIVLVMAPTRELVMQIEQQCRKFAQPCKIS--CLAIFGGVPR 178
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA-----RTASLNIESHFSYI 439
Q + L GV++LIATPGR + ++ G+++L + + R + E H I
Sbjct: 179 DGQQQKLSRGVEILIATPGRLLDFMESGVVKLNRVTYLVLDEADRMLDMGFEKHIKKI 236
>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 442
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + F RP+ IQA A P +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLDALQEKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPAMQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV + R L+K +TGG
Sbjct: 65 -----HLIDFPRKKSGPPRILILTPTRELAMQVADHARELAK-HTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>gi|386823670|ref|ZP_10110813.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica PRI-2C]
gi|386379365|gb|EIJ20159.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica PRI-2C]
Length = 441
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +I++L+ + + RP+ IQA A PP ++G+ + + +G+GKT A+LLPV+Q
Sbjct: 5 NFSELDLDERLIKALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PRV+IL PT ELA QV R L+ +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELA-AHTSLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 450
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 89/149 (59%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +L R+ + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + R ++LAPT ELA+Q+ + R+ + P ++V GG + Q
Sbjct: 64 LAADR----RRPAPFTARTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIV-GGVSHRPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ L G+DVL+ATPGR + I G L+L
Sbjct: 119 IDMLARGLDVLVATPGRLLDHIASGKLKL 147
>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
J2315]
gi|444357064|ref|ZP_21158648.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444373030|ref|ZP_21172445.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
J2315]
gi|443592438|gb|ELT61240.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|443606699|gb|ELT74462.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
Length = 484
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLHNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|373487181|ref|ZP_09577850.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372010063|gb|EHP10676.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 438
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 91/158 (57%), Gaps = 12/158 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +++ Q + P+ IQA A P V++G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFDTLGLLPELLRAVREQGYETPTPIQAQAIPVVLQGRDLMGGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R ++L PT ELA QV + R+ K +P RS + GG
Sbjct: 62 RLAPQ------ASTSTSPAKHPIRALVLTPTRELAMQVEESIRTYGKH-IPLRSTTIFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GV++L+ATPGR + ++G L+ L
Sbjct: 115 VNINPQIAALRKGVEILVATPGRLLDHHQQGTLRFDQL 152
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G + ++ +L Q ++ P+ IQA A P V++G + A Q+G+GKT + LP+IQ
Sbjct: 38 FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L ++S SP R +IL PT ELA QV N ++ S+ P RS+VV GG
Sbjct: 98 LMAH------ANSSASPARHPVRALILTPTRELADQVADNVKAYSRH-TPLRSVVVFGGV 150
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + I++ L L
Sbjct: 151 DMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNL 184
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ ++ + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 24 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 83
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 84 LLTRG-----NRAQAKQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVVFGGVGIGP 137
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L +GVD+L+ATPGR + L + L L
Sbjct: 138 QISKLGKGVDILVATPGRLLDLFNQRALNFNQL 170
>gi|424043574|ref|ZP_17781197.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
gi|408888103|gb|EKM26564.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
Length = 417
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 81/140 (57%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++++L N + P+ +Q + P V+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q K +G+P+ +IL PT ELA QV+ N S + + V GG
Sbjct: 64 TVQQ-------KKRNGTPQSLILVPTRELAQQVMDNLTQYS-ANTDLKIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q L+EG D+LIATPGR +
Sbjct: 116 QKRKLEEGADILIATPGRLL 135
>gi|15601523|ref|NP_233154.1| DEAD/DEAH box helicase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V52]
gi|147671636|ref|YP_001215545.1| DEAD/DEAH box helicase [Vibrio cholerae O395]
gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
8457]
gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
B33]
gi|227119721|ref|YP_002821616.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|360037667|ref|YP_004939429.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|379744177|ref|YP_005335229.1| ATP-dependent RNA helicase [Vibrio cholerae IEC224]
gi|417811718|ref|ZP_12458379.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-49A2]
gi|417816978|ref|ZP_12463608.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HCUF01]
gi|418331464|ref|ZP_12942407.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-06A1]
gi|418337875|ref|ZP_12946770.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-23A1]
gi|418345766|ref|ZP_12950545.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-28A1]
gi|418349549|ref|ZP_12954281.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43A1]
gi|418353657|ref|ZP_12956382.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-61A1]
gi|419826271|ref|ZP_14349774.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1033(6)]
gi|421317251|ref|ZP_15767821.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1032(5)]
gi|421320213|ref|ZP_15770771.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1038(11)]
gi|421324258|ref|ZP_15774785.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1041(14)]
gi|421327226|ref|ZP_15777744.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1042(15)]
gi|421332317|ref|ZP_15782796.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1046(19)]
gi|421335957|ref|ZP_15786420.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1048(21)]
gi|421339697|ref|ZP_15790131.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-20A2]
gi|421346096|ref|ZP_15796480.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-46A1]
gi|422889693|ref|ZP_16932164.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-40A1]
gi|422898602|ref|ZP_16935893.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48A1]
gi|422904652|ref|ZP_16939545.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-70A1]
gi|422913250|ref|ZP_16947766.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HFU-02]
gi|422927660|ref|ZP_16960605.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-38A1]
gi|423144026|ref|ZP_17131643.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-19A1]
gi|423147721|ref|ZP_17135100.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-21A1]
gi|423151508|ref|ZP_17138740.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-22A1]
gi|423156364|ref|ZP_17143467.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-32A1]
gi|423161924|ref|ZP_17148807.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-33A2]
gi|423163024|ref|ZP_17149849.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48B2]
gi|423732890|ref|ZP_17706134.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-17A1]
gi|423741184|ref|ZP_17710631.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A2]
gi|423892735|ref|ZP_17726414.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-62A1]
gi|423918993|ref|ZP_17729186.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-77A1]
gi|424000506|ref|ZP_17743616.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-17A2]
gi|424004210|ref|ZP_17747217.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-37A1]
gi|424023197|ref|ZP_17762863.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-62B1]
gi|424026790|ref|ZP_17766403.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-69A1]
gi|424588412|ref|ZP_18027909.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1030(3)]
gi|424593161|ref|ZP_18032521.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1040(13)]
gi|424597090|ref|ZP_18036308.1| ATP-dependent RNA helicase rhlE [Vibrio Cholerae CP1044(17)]
gi|424603914|ref|ZP_18042966.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1047(20)]
gi|424604666|ref|ZP_18043654.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1050(23)]
gi|424608492|ref|ZP_18047371.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-39A1]
gi|424615264|ref|ZP_18053981.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-41A1]
gi|424619115|ref|ZP_18057721.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-42A1]
gi|424620030|ref|ZP_18058579.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-47A1]
gi|424643986|ref|ZP_18081743.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-56A2]
gi|424650773|ref|ZP_18088320.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-57A2]
gi|424654553|ref|ZP_18091872.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A2]
gi|440711582|ref|ZP_20892223.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443503560|ref|ZP_21070535.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-64A1]
gi|443507470|ref|ZP_21074249.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-65A1]
gi|443510546|ref|ZP_21077214.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-67A1]
gi|443517090|ref|ZP_21083536.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-68A1]
gi|443520742|ref|ZP_21087075.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-71A1]
gi|443522775|ref|ZP_21089019.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-72A2]
gi|443529675|ref|ZP_21095692.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-7A1]
gi|443533366|ref|ZP_21099313.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-80A1]
gi|443537042|ref|ZP_21102900.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A1]
gi|449057894|ref|ZP_21736190.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V52]
gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
8457]
gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
B33]
gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
O395]
gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|340040128|gb|EGR01101.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HCUF01]
gi|340044538|gb|EGR05486.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-49A2]
gi|341627818|gb|EGS53112.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-70A1]
gi|341629427|gb|EGS54585.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48A1]
gi|341629664|gb|EGS54809.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-40A1]
gi|341639204|gb|EGS63828.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HFU-02]
gi|341643281|gb|EGS67575.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-38A1]
gi|356420719|gb|EHH74234.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-06A1]
gi|356424913|gb|EHH78306.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-21A1]
gi|356426301|gb|EHH79617.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-19A1]
gi|356431259|gb|EHH84464.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-23A1]
gi|356435859|gb|EHH89003.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-28A1]
gi|356437178|gb|EHH90284.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-22A1]
gi|356441078|gb|EHH94008.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-33A2]
gi|356441647|gb|EHH94547.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-32A1]
gi|356446411|gb|EHH99211.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43A1]
gi|356454722|gb|EHI07369.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-61A1]
gi|356457272|gb|EHI09837.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48B2]
gi|356648821|gb|AET28875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796771|gb|AFC60241.1| ATP-dependent RNA helicase [Vibrio cholerae IEC224]
gi|395919709|gb|EJH30532.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1032(5)]
gi|395922272|gb|EJH33091.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1041(14)]
gi|395925101|gb|EJH35903.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1038(11)]
gi|395931115|gb|EJH41861.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1046(19)]
gi|395934151|gb|EJH44890.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1042(15)]
gi|395935639|gb|EJH46374.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1048(21)]
gi|395941256|gb|EJH51934.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-20A2]
gi|395947623|gb|EJH58278.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-46A1]
gi|395955372|gb|EJH65972.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-42A1]
gi|395963024|gb|EJH73306.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-56A2]
gi|395966623|gb|EJH76739.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-57A2]
gi|395968524|gb|EJH78473.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1030(3)]
gi|395969452|gb|EJH79329.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1047(20)]
gi|395978896|gb|EJH88261.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-47A1]
gi|408006494|gb|EKG44636.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-41A1]
gi|408012583|gb|EKG50359.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-39A1]
gi|408039780|gb|EKG76045.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1040(13)]
gi|408046931|gb|EKG82590.1| ATP-dependent RNA helicase rhlE [Vibrio Cholerae CP1044(17)]
gi|408048587|gb|EKG83985.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1050(23)]
gi|408059363|gb|EKG94129.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A2]
gi|408609061|gb|EKK82444.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1033(6)]
gi|408616560|gb|EKK89710.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-17A1]
gi|408646952|gb|EKL18511.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A2]
gi|408656738|gb|EKL27830.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-62A1]
gi|408661724|gb|EKL32706.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-77A1]
gi|408851202|gb|EKL91140.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-37A1]
gi|408851264|gb|EKL91201.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-17A2]
gi|408873673|gb|EKM12867.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-62B1]
gi|408880132|gb|EKM19062.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-69A1]
gi|439973069|gb|ELP49312.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443432081|gb|ELS74616.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-64A1]
gi|443435910|gb|ELS82038.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-65A1]
gi|443440513|gb|ELS90198.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-67A1]
gi|443441601|gb|ELS94968.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-68A1]
gi|443445628|gb|ELT02347.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-71A1]
gi|443451207|gb|ELT11467.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-72A2]
gi|443459245|gb|ELT26639.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-7A1]
gi|443463450|gb|ELT34454.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-80A1]
gi|443467051|gb|ELT41707.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A1]
gi|448262851|gb|EMB00098.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
Length = 422
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|392537500|ref|ZP_10284637.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 433
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I +L N+ + IQ A P V +GK + + Q+G+GKT A+ LPVIQ
Sbjct: 2 NFKSFSFAPEIIRALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + +L ST+ +P ++LAPT ELA Q+ +NC+ +K + + + GG
Sbjct: 62 KLIESDL-----STTNAPTALVLAPTRELAEQIANNCKEYAK-HTSLKVVSLFGGVNTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L+ GVD+++ATPGR + I+ G L L N++
Sbjct: 116 QENALKAGVDIVVATPGRLLDHIRLGNLSLANVK 149
>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 451
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIDKEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L + + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSL 147
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++
Sbjct: 18 TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFM 408
Q E L+ G +VL+ATPGR +
Sbjct: 135 PQKEALRRGCEVLVATPGRLL 155
>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
Length = 499
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 6/154 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNQVRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ L++G DVL+ATPGR + L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLLDLYNQNAVKFDQLEM 150
>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 581
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++++ + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +K R ++L PT ELA+QV + R K + S VV GG
Sbjct: 62 RLSQNPA-AKNKFGGKGIRALVLTPTRELAAQVEESVREYGKY-LAIDSTVVFGGVGMAP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+E LQ GVD+L+ATPGR + L ++G + L +++
Sbjct: 120 QIERLQRGVDILVATPGRLLDLQQQGFVDLASVQ 153
>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
2653]
gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
2653]
Length = 455
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 69 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 123 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 157
>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 479
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +Q A P V+ G + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + +S RV++L PT ELA QVL + + K G+ R + GG
Sbjct: 62 RLVQHG----PEVSSNRARVLVLVPTRELAEQVLQSFVAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|388599954|ref|ZP_10158350.1| hypothetical protein VcamD_08670 [Vibrio campbellii DS40M4]
Length = 506
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 20/161 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L S PRV ++L PT ELA+QV N S+ +P S VV G
Sbjct: 63 L------------SNGPRVRGNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
G + Q+ L++G DVL+ATPGR M L + ++ L
Sbjct: 110 GVKINPQMLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEM 150
>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821, partial [Collinsella stercoris
DSM 13279]
gi|210160006|gb|EEA90977.1| DEAD/DEAH box helicase, partial [Collinsella stercoris DSM 13279]
Length = 595
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + P+ +QA + P ++G+ + A Q+G+GKT A+LLP +
Sbjct: 40 TFADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMN 99
Query: 329 RL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + + + P ++++ PT ELA Q+ CR+++KC S+ V GG
Sbjct: 100 NLPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKC-TGHTSVTVVGGVSYN 158
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ G D+LIATPGR LI +G L
Sbjct: 159 PQRDKLKRGCDILIATPGRLQDLIDQGACSL 189
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ +F LG ++ ++ ++ + P+ IQA A P V+EG + A Q+G+GKT + LP
Sbjct: 3 SQITFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL Q G PR +ILAPT ELA+QV + R S+ RSMV+ GG
Sbjct: 63 ILHRLLNNPQQ---NRKPGRPRALILAPTRELAAQVEESVRLYSQH-TRLRSMVMFGGVN 118
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L++ +D+L+ATPGR + +++ + L
Sbjct: 119 INPQFHALRKPLDILVATPGRLLDHVRQRTVDL 151
>gi|384211416|ref|YP_005600498.1| DEAD/DEAH box helicase [Brucella melitensis M5-90]
gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
Length = 455
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 69 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 123 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 157
>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
Length = 434
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 92/157 (58%), Gaps = 7/157 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L + + ++++ Q + P+ IQ + P +++G+ + Q+G+GKT A+ +P++Q
Sbjct: 2 NFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +K + + +IL PT ELA Q+ N + K +P + +V+ GG +Q
Sbjct: 62 NLSK------NKIPNKHIKALILTPTRELAIQIEENINAYGKY-LPLKQLVIFGGVKQGN 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q L++GVD+L+ATPGR + I +GI+ L NL +
Sbjct: 115 QEAALKKGVDILVATPGRLLDFIAQGIISLKNLEIFV 151
>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella
inopinata BO1]
gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella
inopinata BO1]
Length = 455
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 69 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 123 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 157
>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
Length = 419
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG SD +++++ ++ + PS IQA A P ++EGK + + Q+G+GKT + LP++
Sbjct: 2 TFKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ Q + +I+ PT ELA+Q+L + S RS V+ GG
Sbjct: 62 IITKQPFQ-----RHRPVKALIVTPTRELAAQILKEIKDYS-AFTDVRSTVIFGGVNANP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ L++G D+L+ATPGR + L +G+ + + +
Sbjct: 116 QIRALKQGTDILVATPGRLLDLHSQGVFNMKKVEF 150
>gi|339324706|ref|YP_004684399.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338164863|gb|AEI75918.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 532
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L +G + + + R ++L PT ELA+QV + R+ K + RSMV+ GG
Sbjct: 62 MLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKY-LRLRSMVMFGGVG 120
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E L+ GV++++ATPGR + + + + L
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDL 153
>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
Length = 971
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 5/152 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+E +Y++ +K+Q F RP+ IQ+ +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 267 QSFEEGNFPEYVMNEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGL 326
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQ 386
+ ++ + P V++LAPT ELA Q+ + R P R + GG +
Sbjct: 327 VHISHQK----PLTRGDGPIVLVLAPTRELAQQIQTVVREFGNHSKPNIRYTCIFGGALK 382
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +L+ GV+V+IATPGR + ++ GI L
Sbjct: 383 GPQVRDLERGVEVVIATPGRLIDFLERGITNL 414
>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
Length = 455
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 9 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 68
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 69 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 123 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 157
>gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357421|ref|ZP_12960119.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689382|gb|EHI53922.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 463
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P V+ G+ + Q+G+GKT + LP++
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLMANHGRGGRRQV----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
LE ++ GVD+L+ATPGR + L+ + L L L
Sbjct: 117 NLEAIKLGVDILVATPGRLLDLLTQRALTLTEL 149
>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase [Pedobacter saltans DSM 12145]
gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
12145]
Length = 445
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 9/147 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F++ + ++ +++ + +P+ IQ A PP++ G+ + Q+G+GKT AY+LP+I
Sbjct: 3 KNFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPMI 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+L+ + R +ILAPT ELA Q+ N + SK RS+VV GG K
Sbjct: 63 MKLKF--------AQGDDIRALILAPTRELALQIEENVKIFSKY-TDLRSVVVFGGIGPK 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEG 414
Q + L +G D+LIATPGRFM L +G
Sbjct: 114 AQADQLAKGADILIATPGRFMDLYLDG 140
>gi|206579391|ref|YP_002239559.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae 342]
gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
342]
gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
Length = 451
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIDKEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|309813271|ref|ZP_07706987.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
gi|308432767|gb|EFP56683.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
Length = 906
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 81/150 (54%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++E + R +P IQA P + GK + ++GSGKTL + LP++
Sbjct: 396 TFTELGLPEALVERMARDGITKPFPIQAATIPDAMAGKDVLGRGRTGSGKTLGFGLPMLA 455
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + K+ + PR ++L PT ELA QV + L V + +V GG +
Sbjct: 456 RLAEG-----GKARAHQPRAIVLVPTRELAMQVSDALQPLVHV-VGLKHKLVAGGMPYEP 509
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL L+ GVDVLIATPGR LI+ G L
Sbjct: 510 QLSALERGVDVLIATPGRLSDLIERGAADL 539
>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
Length = 465
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +ILAPT ELA QV N +K S VV GG +
Sbjct: 62 RLSTG-----PKAKSNHVRALILAPTRELALQVSENVEEYAKHS-NVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 87/145 (60%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S ++++++ + + +PS IQ P V+EGK + A Q+G+GKT A+ LP++
Sbjct: 2 SFKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPILS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + + + + + +IL PT ELA+Q+ N RS K + ++ VV GG
Sbjct: 62 M-----FENTTPAAANNVKALILTPTRELAAQIDENIRSYGKH-LNLKTQVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
Q+ L+ GVD+L+ATPGR M L ++
Sbjct: 116 QMIKLRRGVDILVATPGRLMDLYQQ 140
>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 491
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++ ++ Q + P+ IQA A P V+ G+ + Q+G+GKT A+ LP++QR
Sbjct: 3 FDDLGLAPDLLRAIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ S S + P RV++LAPT ELA QV + R SK VP RS V GG K
Sbjct: 63 IL--PFASASLSPARHPVRVLMLAPTRELAIQVHESVRGYSKY-VPLRSACVYGGVDIKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ ++ GV+VL+ATPGR + LI++ L
Sbjct: 120 QIAEIRLGVEVLVATPGRLLDLIEQRCLNF 149
>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
Length = 725
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++ +K+Q F P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 106 FPVQAFEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYIL 165
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P I + + S P V+ILAPT ELA Q+ + R S C R+ + G
Sbjct: 166 PAIVHINNQP----RLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFG 218
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
G + Q +L+ GV++ IATPGR + +++G L
Sbjct: 219 GSPKGPQARDLERGVEICIATPGRLIDFLEKGTTNL 254
>gi|117619321|ref|YP_856922.1| ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560728|gb|ABK37676.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 461
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ ++ G+D+L+ATPGR + L+ +G L L L
Sbjct: 116 NLDAIKLGIDILVATPGRLLDLLTQGALTLSEL 148
>gi|392538647|ref|ZP_10285784.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 465
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +ILAPT ELA QV N +K S VV GG +
Sbjct: 62 RLSTG-----PKAKSNHVRALILAPTRELALQVSENVEEYAKHS-NVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
Length = 462
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 76 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 130 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 164
>gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 441
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + RP+ IQA A PP +EG+ + + +G+GKT AYLLPV+Q
Sbjct: 5 NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R+ + +TGG
Sbjct: 65 -----HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFA-AHTHLDVATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|348618050|ref|ZP_08884583.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816755|emb|CCD29246.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 427
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 6/157 (3%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D FS F G D +++S+ Q + P+ IQ A P + G+ + A Q+G+GKT +
Sbjct: 3 DIFSH--FSHFGLHDDLLKSIAEQGYAVPTPIQVHAIPAALAGRDVMGAAQTGTGKTAGF 60
Query: 323 LLPVIQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
LP++QRL L S S + P R +IL PT ELA QV +N R+ ++ + RS+ V
Sbjct: 61 SLPILQRLL--PLANASVSPARHPVRALILTPTRELADQVAANIRAYAQYTL-LRSLAVF 117
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
GG K Q L+ GV++L+ATPGR + +++ LQL
Sbjct: 118 GGVDMKAQAGELRRGVEILVATPGRLLDHLEQKNLQL 154
>gi|383450999|ref|YP_005357720.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium
indicum GPTSA100-9]
gi|380502621|emb|CCG53663.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium indicum GPTSA100-9]
Length = 431
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + E LK +N++ P+ IQ A P ++E + Q+G+GKT A+ +P++
Sbjct: 2 TFEDLKLHRNITEVLKEENYVAPTPIQQQAIPIILEEHDLVGCAQTGTGKTAAFAIPILN 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G SK+ R ++LAPT ELA Q+L + + + + ++MV+ GG Q
Sbjct: 62 YL--HPIVG-SKNKRKVIRTLVLAPTRELAHQILDSFDTYGRY-MNTKAMVIYGGVNQVP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ ++EGVD+LIATPGR + L K+G + L +L
Sbjct: 118 QVNKIKEGVDILIATPGRLLDLHKQGFIDLNHL 150
>gi|421863783|ref|ZP_16295476.1| ATP-dependent RNA helicase PA3950 [Burkholderia cenocepacia H111]
gi|358076109|emb|CCE46354.1| ATP-dependent RNA helicase PA3950 [Burkholderia cenocepacia H111]
Length = 484
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|334131082|ref|ZP_08504848.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333443712|gb|EGK71673.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 535
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ ++ + + P+ IQ A P V+ G+ + A Q+G+GKT + LP++
Sbjct: 7 FAGLGLAEPLLRAISEEGYTHPTPIQQKAIPLVIAGRDLLAAAQTGTGKTAGFTLPILHT 66
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L + +G PRV++L PT ELA+QV + R+ + RSMV+ GG Q
Sbjct: 67 L----LNRPASIPAGRPRVLVLTPTRELAAQVEESVRTYGRHA-KMRSMVMFGGVGMNPQ 121
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
L+ L++ VD+L+ATPGR + + E L L + +
Sbjct: 122 LQALKQRVDILVATPGRLLDHVGEKSLDLSGVEIF 156
>gi|424843870|ref|ZP_18268495.1| DNA/RNA helicase, superfamily II [Saprospira grandis DSM 2844]
gi|395322068|gb|EJF54989.1| DNA/RNA helicase, superfamily II [Saprospira grandis DSM 2844]
Length = 414
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 10/154 (6%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
FSR F+++ + E L F RP+ IQ A P+++G+ + Q+G+GKT A+ +
Sbjct: 3 FSRYPFEQI-----LKERLAVLEFKRPTDIQYKAIEPILKGQDVLAVAQTGTGKTAAFAI 57
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+ Q+L L KS +P+VV++ PT ELA Q+ S +L++ G ++ + GG
Sbjct: 58 PLAQKL----LASRDKSKGRAPKVVVMVPTHELAQQIESFIHNLTR-GSWIETLAIYGGS 112
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+Q QL L+ GVD+L+ATPGR L +G L+L
Sbjct: 113 KQDKQLAKLETGVDILVATPGRLFDLQAQGALRL 146
>gi|425287375|ref|ZP_18678299.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
gi|408218139|gb|EKI42372.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3006]
Length = 454
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
Length = 462
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 76 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 130 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 164
>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
proteobacterium ANT8C10]
Length = 635
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFKELG S+ +++SL+ +PS+IQ A P ++ GK+ + A Q+G+GKT +++LP+++
Sbjct: 2 SFKELGLSEPILKSLEDLEHTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPMLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ +K S + ++L PT ELA+QV + S K S V GG +
Sbjct: 62 MLHEQ-----AKPYSKNVHALVLTPTRELAAQVRESVHSYGKL-TNITSTAVFGGAKIFP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L++GVD+L+ATPGR + L+ + ++L
Sbjct: 116 QKAKLKKGVDILVATPGRLLDLVNQKAVKL 145
>gi|381395029|ref|ZP_09920736.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379329307|dbj|GAB55869.1| ATP-dependent RNA helicase RhlE [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 399
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ + + P+ IQ A P V+ GK + A Q+G+GKT A+ LP+IQ
Sbjct: 2 SFSALGLSKELVSAVTDKGYTTPTPIQEQAIPAVLSGKDVMAAAQTGTGKTAAFTLPLIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R S+ + ++L PT ELA+QV +N K P RS VV GG
Sbjct: 62 RFA----TNYSEPRPNHIKALVLTPTRELAAQVAANIDEY-KVNTPIRSTVVFGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+++L+ G D+L+ATPGR + L ++ ++
Sbjct: 117 QMKHLRRGCDILVATPGRLLDLFQQNAVKF 146
>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|384408526|ref|YP_005597147.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis M28]
gi|384445114|ref|YP_005603833.1| DEAD/DEAH box helicase [Brucella melitensis NI]
gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis M28]
gi|349743105|gb|AEQ08648.1| DEAD-box ATP dependent DNA helicase [Brucella melitensis NI]
Length = 462
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 76 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 130 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 164
>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|376274208|ref|YP_005114647.1| DEAD/DEAH box helicase [Brucella canis HSK A52141]
gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|363402775|gb|AEW13070.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
HSK A52141]
Length = 462
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 76 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 130 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 164
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 12/153 (7%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + +TS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
GG Q + L+ GV++LIATPGR + +++
Sbjct: 122 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQ 154
>gi|432601332|ref|ZP_19837581.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
gi|431143165|gb|ELE44903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE66]
Length = 453
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|443242157|ref|YP_007375382.1| ATP-dependent RNA helicase [Nonlabens dokdonensis DSW-6]
gi|442799556|gb|AGC75361.1| ATP-dependent RNA helicase [Nonlabens dokdonensis DSW-6]
Length = 425
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 93/159 (58%), Gaps = 9/159 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG + ++ +L+ Q + RP+ IQA A P ++EGK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKELGLVEPILRALQDQGYERPTPIQAQAIPVLLEGKDLLGCAQTGTGKTAAFSIPIVQ 61
Query: 329 RLRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L G R+ +++ PT ELA Q+ N + +K ++ V+ GG +Q
Sbjct: 62 DLYNR------TPPKGKRRIKTLVVTPTRELAIQIGENFTAYTKY-TDIKNTVIFGGVKQ 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
+Q+ L +G+DVL+ATPGR + LI + + L ++ +
Sbjct: 115 TSQVYALHQGIDVLVATPGRLLDLINQRYITLDHIEHFV 153
>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
Length = 462
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 76 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 130 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 164
>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
Length = 462
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 76 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 130 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 164
>gi|222874781|gb|EEF11912.1| predicted protein [Populus trichocarpa]
Length = 229
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Query: 244 LQYEPTD-CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
+Q+ PT ++R + F +LG S+ ++++ P IQ A PP
Sbjct: 1 MQFAPTHGVERERENRLTKDNILPSGGFADLGISETLLKAAAAAGMTEPKPIQKEAIPPF 60
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQV 361
+ G + Q+GSGKT A+ LP++ + + GL +K + R +IL PT ELA Q+
Sbjct: 61 LAGSDILGVAQTGSGKTAAFSLPILSK-----IIGLGTKRRPRTARALILVPTRELAVQI 115
Query: 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
R L+K G + +V GG + +Q++ + +GVDVLIATPGR L+++G + L
Sbjct: 116 EKVVRELAK-GAHVSTALVLGGVSRHSQIKRMAQGVDVLIATPGRLTDLVRDGAVVLSET 174
Query: 422 RWY 424
W
Sbjct: 175 TWL 177
>gi|398980078|ref|ZP_10688813.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398135037|gb|EJM24167.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 446
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL++ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K T+ S R +IL PT ELA QV R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVTANSVRALILVPTRELAEQVHEAVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRGGVDLLVATPGRLLDLFRQNALKFNQLQ 150
>gi|338998498|ref|ZP_08637171.1| ATP-dependent RNA helicase RhlE [Halomonas sp. TD01]
gi|338764572|gb|EGP19531.1| ATP-dependent RNA helicase RhlE [Halomonas sp. TD01]
Length = 418
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG D ++ ++ Q + +P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLHDDLLRAVTAQGYTQPTPIQQKAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G + R ++L PT ELA+QV + K + RS ++ GG Q+
Sbjct: 62 RLADGKRPGKRQV-----RALVLTPTRELAAQVGESVTVYGKH-LSLRSHIIFGGVGQQP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L+ G+DVL+ATPGR + L ++G + L
Sbjct: 116 QVDALKAGLDVLVATPGRLLDLHQQGHVDL 145
>gi|422358967|ref|ZP_16439616.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
110-3]
gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
Length = 439
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385870686|gb|AFI89206.1| ATP-dependent RNA helicase SrmB [Pectobacterium sp. SCC3193]
Length = 441
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + RP+ IQA A PP +EG+ + + +G+GKT AYLLPV+Q
Sbjct: 5 NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R+ + +TGG
Sbjct: 65 -----HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFA-AHTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 477
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E Q K R +IL PT ELA+Q+ N ++ SK + RS+VV GG
Sbjct: 62 LLNSREAQNKGKGRR-PVRALILTPTRELAAQIDENVKAYSKY-LRLRSLVVFGGVSINP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L + + L
Sbjct: 120 QMMKLRGGVDILVATPGRLLDLEHQNAVDL 149
>gi|424817011|ref|ZP_18242162.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|376273221|ref|YP_005151799.1| DEAD/DEAH box helicase [Brucella abortus A13334]
gi|423166845|ref|ZP_17153548.1| hypothetical protein M17_00535 [Brucella abortus bv. 1 str. NI435a]
gi|423173137|ref|ZP_17159808.1| hypothetical protein M1A_00535 [Brucella abortus bv. 1 str. NI486]
gi|423180211|ref|ZP_17166852.1| hypothetical protein M1G_01311 [Brucella abortus bv. 1 str. NI010]
gi|423183343|ref|ZP_17169980.1| hypothetical protein M1I_01312 [Brucella abortus bv. 1 str. NI016]
gi|423185717|ref|ZP_17172331.1| hypothetical protein M1K_00535 [Brucella abortus bv. 1 str. NI021]
gi|423188853|ref|ZP_17175463.1| hypothetical protein M1M_00535 [Brucella abortus bv. 1 str. NI259]
gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|363400827|gb|AEW17797.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
A13334]
gi|374543076|gb|EHR14560.1| hypothetical protein M17_00535 [Brucella abortus bv. 1 str. NI435a]
gi|374543692|gb|EHR15174.1| hypothetical protein M1A_00535 [Brucella abortus bv. 1 str. NI486]
gi|374548775|gb|EHR20222.1| hypothetical protein M1G_01311 [Brucella abortus bv. 1 str. NI010]
gi|374549406|gb|EHR20849.1| hypothetical protein M1I_01312 [Brucella abortus bv. 1 str. NI016]
gi|374558511|gb|EHR29904.1| hypothetical protein M1M_00535 [Brucella abortus bv. 1 str. NI259]
gi|374559808|gb|EHR31193.1| hypothetical protein M1K_00535 [Brucella abortus bv. 1 str. NI021]
Length = 458
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 16 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 75
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 76 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 130 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 164
>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 505
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 97/164 (59%), Gaps = 11/164 (6%)
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+QR + + +G + KSF+++G DY++E + R F+ P+ IQA +P ++G+ I
Sbjct: 82 RQRREITVEGRDVPKPVKSFRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIG 141
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKTLAYLLP I + + + + P V++LAPT ELA Q+ +K
Sbjct: 142 IAETGSGKTLAYLLPAIVHVNAQPIL----APGDGPIVLVLAPTRELAVQIQQEA---TK 194
Query: 371 CGVPFR--SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK 412
G R + + GG + Q+ +LQ+GV+++IATPGR + +++
Sbjct: 195 FGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLE 238
>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
Length = 546
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E+ + ++ + + RP+ +Q A P ++ G+ + Q+GSGKT A+LLP I
Sbjct: 94 TFEEVEFFESTKATIGKCGYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPAIT 153
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +E++ G S++ + SP+V+I++PT EL Q+ + R + G +R +V GG
Sbjct: 154 KLIKEQVPGGSQAETQSPQVLIISPTRELTLQIYNEARKFTH-GTMYRPVVAYGGTAVGY 212
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL+ L+ G ++L+ TPGR + + G +QL
Sbjct: 213 QLKQLEGGCNILVGTPGRLLDFLNRGQVQL 242
>gi|449308931|ref|YP_007441287.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
gi|449098964|gb|AGE86998.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
Length = 444
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTANQPHPKGRRPV---RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|422353494|ref|ZP_16434247.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
117-3]
gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
Length = 442
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|365538577|ref|ZP_09363752.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 412
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 82/139 (58%), Gaps = 6/139 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG SD +++++ + P+ IQ A P ++ GK+ I A Q+G+GKT +++LP++Q
Sbjct: 3 FSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKTASFVLPILQM 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q Q + R +ILAPT ELA QV N +K +P S+ + GG + Q
Sbjct: 63 LSQGTTQRAKRV-----RALILAPTRELALQVEENITQYAKY-LPLTSLAMYGGVDSQKQ 116
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L EGVD+LIATPGR +
Sbjct: 117 KQRLIEGVDILIATPGRLL 135
>gi|422368931|ref|ZP_16449335.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 16-3]
gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
Length = 446
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + ++S SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPQ------ANSSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+Q+ L+ GV++LIATPGR + +++ L
Sbjct: 125 VDMNSQMAELRRGVEILIATPGRLLDHVQQKTANL 159
>gi|422377585|ref|ZP_16457824.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS 60-1]
gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
Length = 438
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ Q + PS IQA A P ++EG+ + A Q+G+GKT + LP+++
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLE 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E + S R ++L PT ELA+QV + ++ + + +S VV GG +
Sbjct: 66 ILSKGE-----NAQSNQVRALVLTPTRELAAQVAESVKNYGQH-LSLKSTVVFGGVKINP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ G D+LIATPGR M L + ++ L
Sbjct: 120 QMMALRRGADILIATPGRMMDLYNQKAVRFDKL 152
>gi|419911645|ref|ZP_14430115.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
gi|388393221|gb|EIL54610.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD1]
Length = 452
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|432769642|ref|ZP_20003995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|432960359|ref|ZP_20150490.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|433062038|ref|ZP_20248995.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
gi|431317724|gb|ELG05500.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE50]
gi|431478046|gb|ELH57805.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE202]
gi|431586954|gb|ELI58336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE125]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|432552747|ref|ZP_19789477.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
gi|431086319|gb|ELD92342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE47]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
Length = 437
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 12/156 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +++++ + + PS IQA A P V+EG+ + A Q+G+GKT + LP+
Sbjct: 2 SFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPL-- 59
Query: 329 RLRQEELQGLSK---STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L GLSK + + R ++L PT ELA+QV + K + RS VV GG +
Sbjct: 60 ------LHGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKY-LNLRSAVVFGGVK 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+LIATPGR + L ++ + L
Sbjct: 113 INPQMMRLRKGVDILIATPGRLLDLYQQNAMSFQKL 148
>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 520
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L +G + + + R ++L PT ELA+QV + R+ K + RSMV+ GG
Sbjct: 62 LLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKY-LRLRSMVMFGGVG 120
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E L+ GV++++ATPGR + + + + L
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDL 153
>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
Length = 446
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 12/156 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +++++ + + PS IQA A P V+EG+ + A Q+G+GKT + LP+
Sbjct: 11 SFSTLGLSESLLKAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPL-- 68
Query: 329 RLRQEELQGLSK---STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L GLSK + + R ++L PT ELA+QV + K + RS VV GG +
Sbjct: 69 ------LHGLSKGQPAKANQVRALVLTPTRELAAQVAESVDIYGKY-LNLRSAVVFGGVK 121
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+LIATPGR + L ++ + L
Sbjct: 122 INPQMMRLRKGVDILIATPGRLLDLYQQNAMSFQKL 157
>gi|22125187|ref|NP_668610.1| ATP-dependent RNA helicase SrmB [Yersinia pestis KIM10+]
gi|45442294|ref|NP_993833.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Microtus
str. 91001]
gi|51597216|ref|YP_071407.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
32953]
gi|108808436|ref|YP_652352.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Antiqua]
gi|108811359|ref|YP_647126.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Nepal516]
gi|145598847|ref|YP_001162923.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Pestoides F]
gi|149365400|ref|ZP_01887435.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
gi|162420447|ref|YP_001607925.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
gi|165925272|ref|ZP_02221104.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937169|ref|ZP_02225734.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008251|ref|ZP_02229149.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212404|ref|ZP_02238439.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399586|ref|ZP_02305110.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421460|ref|ZP_02313213.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423084|ref|ZP_02314837.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167470537|ref|ZP_02335241.1| ATP-dependent RNA helicase SrmB [Yersinia pestis FV-1]
gi|186896313|ref|YP_001873425.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis PB1/+]
gi|218929780|ref|YP_002347655.1| ATP-dependent RNA helicase SrmB [Yersinia pestis CO92]
gi|229838271|ref|ZP_04458430.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229895533|ref|ZP_04510704.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
gi|229898835|ref|ZP_04513980.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229901609|ref|ZP_04516731.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|270489798|ref|ZP_06206872.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
gi|294504499|ref|YP_003568561.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
gi|384122913|ref|YP_005505533.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
gi|384126822|ref|YP_005509436.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
gi|384139452|ref|YP_005522154.1| ATP-dependent RNA helicase SrmB [Yersinia pestis A1122]
gi|384415579|ref|YP_005624941.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420547721|ref|ZP_15045591.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-01]
gi|420553036|ref|ZP_15050344.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-02]
gi|420558597|ref|ZP_15055208.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-03]
gi|420564050|ref|ZP_15060064.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-04]
gi|420569091|ref|ZP_15064642.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-05]
gi|420574741|ref|ZP_15069756.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-06]
gi|420580036|ref|ZP_15074562.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-07]
gi|420585403|ref|ZP_15079431.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-08]
gi|420590534|ref|ZP_15084046.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-09]
gi|420595901|ref|ZP_15088872.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-10]
gi|420601574|ref|ZP_15093926.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-11]
gi|420606993|ref|ZP_15098814.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-12]
gi|420612383|ref|ZP_15103656.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-13]
gi|420617771|ref|ZP_15108376.1| type III restriction enzyme, res subunit [Yersinia pestis PY-14]
gi|420623072|ref|ZP_15113124.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-15]
gi|420628154|ref|ZP_15117737.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-16]
gi|420633280|ref|ZP_15122342.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-19]
gi|420638479|ref|ZP_15127013.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-25]
gi|420643938|ref|ZP_15131975.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-29]
gi|420649236|ref|ZP_15136783.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-32]
gi|420654877|ref|ZP_15141851.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-34]
gi|420660363|ref|ZP_15146778.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-36]
gi|420665651|ref|ZP_15151515.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-42]
gi|420670548|ref|ZP_15155973.1| type III restriction enzyme, res subunit [Yersinia pestis PY-45]
gi|420675899|ref|ZP_15160843.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-46]
gi|420681507|ref|ZP_15165917.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-47]
gi|420686817|ref|ZP_15170648.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-48]
gi|420692025|ref|ZP_15175226.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-52]
gi|420697797|ref|ZP_15180299.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-53]
gi|420703538|ref|ZP_15184936.1| type III restriction enzyme, res subunit [Yersinia pestis PY-54]
gi|420709016|ref|ZP_15189693.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-55]
gi|420714464|ref|ZP_15194556.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-56]
gi|420719964|ref|ZP_15199296.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-58]
gi|420725452|ref|ZP_15204098.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-59]
gi|420731023|ref|ZP_15209090.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-60]
gi|420736076|ref|ZP_15213660.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-61]
gi|420741554|ref|ZP_15218583.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-63]
gi|420747203|ref|ZP_15223395.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-64]
gi|420752707|ref|ZP_15228267.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-65]
gi|420758362|ref|ZP_15232887.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-66]
gi|420763754|ref|ZP_15237544.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-71]
gi|420768964|ref|ZP_15242224.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-72]
gi|420773960|ref|ZP_15246738.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-76]
gi|420779532|ref|ZP_15251656.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-88]
gi|420785137|ref|ZP_15256565.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-89]
gi|420790328|ref|ZP_15261207.1| type III restriction enzyme, res subunit [Yersinia pestis PY-90]
gi|420795840|ref|ZP_15266165.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-91]
gi|420800895|ref|ZP_15270703.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-92]
gi|420806267|ref|ZP_15275565.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-93]
gi|420811583|ref|ZP_15280350.1| type III restriction enzyme, res subunit [Yersinia pestis PY-94]
gi|420817131|ref|ZP_15285350.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-95]
gi|420822449|ref|ZP_15290128.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-96]
gi|420827530|ref|ZP_15294689.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-98]
gi|420833216|ref|ZP_15299826.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-99]
gi|420838090|ref|ZP_15304235.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-100]
gi|420843275|ref|ZP_15308936.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-101]
gi|420848926|ref|ZP_15314019.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-102]
gi|420854511|ref|ZP_15318789.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-103]
gi|420859792|ref|ZP_15323401.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-113]
gi|421764205|ref|ZP_16200997.1| ATP-dependent RNA helicase SrmB [Yersinia pestis INS]
gi|21958051|gb|AAM84861.1|AE013731_6 ATP-dependent RNA helicase [Yersinia pestis KIM10+]
gi|45437158|gb|AAS62710.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|51590498|emb|CAH22138.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|108775007|gb|ABG17526.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|108780349|gb|ABG14407.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
gi|115348391|emb|CAL21327.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
gi|145210543|gb|ABP39950.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
gi|149291813|gb|EDM41887.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
gi|162353262|gb|ABX87210.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
gi|165915032|gb|EDR33644.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922879|gb|EDR40030.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992633|gb|EDR44934.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206335|gb|EDR50815.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960949|gb|EDR56970.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167052090|gb|EDR63498.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057254|gb|EDR67000.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|186699339|gb|ACC89968.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
PB1/+]
gi|229681538|gb|EEO77632.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
gi|229688383|gb|EEO80454.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229694637|gb|EEO84684.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229701339|gb|EEO89367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
gi|262362509|gb|ACY59230.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
gi|262366486|gb|ACY63043.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
gi|270338302|gb|EFA49079.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
gi|294354958|gb|ADE65299.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
gi|320016083|gb|ADV99654.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342854581|gb|AEL73134.1| ATP-dependent RNA helicase SrmB [Yersinia pestis A1122]
gi|391424573|gb|EIQ86934.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-01]
gi|391425878|gb|EIQ88112.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-02]
gi|391426496|gb|EIQ88673.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-03]
gi|391439781|gb|EIR00406.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-04]
gi|391441284|gb|EIR01789.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-05]
gi|391444686|gb|EIR04882.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-06]
gi|391456589|gb|EIR15600.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-07]
gi|391457538|gb|EIR16467.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-08]
gi|391459927|gb|EIR18666.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-09]
gi|391472747|gb|EIR30178.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-10]
gi|391474503|gb|EIR31789.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-11]
gi|391475186|gb|EIR32410.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-12]
gi|391488945|gb|EIR44736.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-13]
gi|391490066|gb|EIR45747.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-15]
gi|391491586|gb|EIR47134.1| type III restriction enzyme, res subunit [Yersinia pestis PY-14]
gi|391504415|gb|EIR58508.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-16]
gi|391505092|gb|EIR59129.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-19]
gi|391509966|gb|EIR63543.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-25]
gi|391520404|gb|EIR72957.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-29]
gi|391522600|gb|EIR74981.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-34]
gi|391523676|gb|EIR75968.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-32]
gi|391535631|gb|EIR86689.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-36]
gi|391538258|gb|EIR89078.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-42]
gi|391540416|gb|EIR91043.1| type III restriction enzyme, res subunit [Yersinia pestis PY-45]
gi|391553534|gb|EIS02853.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-46]
gi|391554006|gb|EIS03286.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-47]
gi|391554900|gb|EIS04106.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-48]
gi|391568566|gb|EIS16271.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-52]
gi|391569655|gb|EIS17214.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-53]
gi|391575349|gb|EIS22079.1| type III restriction enzyme, res subunit [Yersinia pestis PY-54]
gi|391582462|gb|EIS28219.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-55]
gi|391585202|gb|EIS30636.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-56]
gi|391595913|gb|EIS39909.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-58]
gi|391598466|gb|EIS42179.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-60]
gi|391600000|gb|EIS43568.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-59]
gi|391612901|gb|EIS54923.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-61]
gi|391613490|gb|EIS55455.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-63]
gi|391617357|gb|EIS58911.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-64]
gi|391625731|gb|EIS66190.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-65]
gi|391632064|gb|EIS71630.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-66]
gi|391636580|gb|EIS75597.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-71]
gi|391638877|gb|EIS77629.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-72]
gi|391648672|gb|EIS86159.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-76]
gi|391652556|gb|EIS89602.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-88]
gi|391657188|gb|EIS93725.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-89]
gi|391661593|gb|EIS97623.1| type III restriction enzyme, res subunit [Yersinia pestis PY-90]
gi|391669495|gb|EIT04623.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-91]
gi|391678843|gb|EIT13028.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-93]
gi|391679747|gb|EIT13851.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-92]
gi|391680596|gb|EIT14624.1| type III restriction enzyme, res subunit [Yersinia pestis PY-94]
gi|391692756|gb|EIT25565.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-95]
gi|391695589|gb|EIT28145.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-96]
gi|391697453|gb|EIT29848.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-98]
gi|391708618|gb|EIT39863.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-99]
gi|391713100|gb|EIT43910.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-100]
gi|391713701|gb|EIT44449.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-101]
gi|391725212|gb|EIT54701.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-102]
gi|391726923|gb|EIT56208.1| ATP-dependent RNA helicase SrmB [Yersinia pestis PY-103]
gi|391729104|gb|EIT58130.1| ATP-dependent RNA helicase srmB [Yersinia pestis PY-113]
gi|411175519|gb|EKS45545.1| ATP-dependent RNA helicase SrmB [Yersinia pestis INS]
Length = 441
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +I++L+ + + RP+ IQA A PP ++G+ + + +G+GKT A+LLP +Q
Sbjct: 5 NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKY-TQLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|432542177|ref|ZP_19779033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|432547647|ref|ZP_19784434.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|432620931|ref|ZP_19856972.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|432814385|ref|ZP_20048175.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
gi|431076431|gb|ELD83926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE236]
gi|431083583|gb|ELD89755.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE237]
gi|431161397|gb|ELE61868.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE76]
gi|431366608|gb|ELG53105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE115]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|432390781|ref|ZP_19633639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|432792011|ref|ZP_20026101.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|432797974|ref|ZP_20031999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
gi|430921399|gb|ELC42223.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE21]
gi|431341593|gb|ELG28599.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE78]
gi|431344996|gb|ELG31928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE79]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|340379503|ref|XP_003388266.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like
[Amphimedon queenslandica]
Length = 793
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E G E++ + + RP+ +Q + P +++G+ + Q+GSGKT A+LLP I
Sbjct: 326 SFDECGFFQTTSENIAKCKYTRPTPVQKYSIPIIMKGRDLMACAQTGSGKTAAFLLPSIT 385
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E + G S++ + SP V+I++PT EL Q+ + R + + +R +VV GG
Sbjct: 386 RLISENIPGASRNDTQSPEVLIISPTRELTLQIYNEARKFTHNSI-YRPVVVYGGTSVGH 444
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
QL ++ G ++L+ TPGR + ++ + L N++ +
Sbjct: 445 QLRQVEGGCNMLVCTPGRLIDFLQRKKVLLDNIKIF 480
>gi|417307244|ref|ZP_12094116.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
gi|338771115|gb|EGP25863.1| ATP-dependent RNA helicase rhlE [Escherichia coli PCN033]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|450186646|ref|ZP_21889564.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
gi|449324165|gb|EMD14102.1| ATP-dependent RNA helicase RhlE [Escherichia coli SEPT362]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|386598515|ref|YP_006100021.1| ATP-dependent RNA helicase [Escherichia coli IHE3034]
gi|386605309|ref|YP_006111609.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|417083288|ref|ZP_11951383.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|419945239|ref|ZP_14461691.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|422753403|ref|ZP_16807230.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|422839261|ref|ZP_16887233.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|432357084|ref|ZP_19600329.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|432361555|ref|ZP_19604739.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|432440118|ref|ZP_19682471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|432445289|ref|ZP_19687595.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|432464759|ref|ZP_19706865.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|432572730|ref|ZP_19809221.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|432582855|ref|ZP_19819265.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|432587037|ref|ZP_19823407.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|432596680|ref|ZP_19832961.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|432753536|ref|ZP_19988102.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|432777676|ref|ZP_20011926.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|432786464|ref|ZP_20020629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|432801077|ref|ZP_20035062.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|432820056|ref|ZP_20053769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|432826272|ref|ZP_20059927.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|432897685|ref|ZP_20108516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|433004263|ref|ZP_20192701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|433012971|ref|ZP_20201347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|433022657|ref|ZP_20210669.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|433027779|ref|ZP_20215652.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|433071845|ref|ZP_20258540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|433119347|ref|ZP_20305054.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|433152888|ref|ZP_20337854.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|433167597|ref|ZP_20352264.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|433182333|ref|ZP_20366629.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|433323476|ref|ZP_20400825.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
IHE3034]
gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
gi|355352704|gb|EHG01878.1| ATP-dependent RNA helicase RhlE [Escherichia coli cloneA_i1]
gi|371609793|gb|EHN98326.1| ATP-dependent RNA helicase rhlE [Escherichia coli H397]
gi|388416387|gb|EIL76278.1| ATP-dependent RNA helicase RhlE [Escherichia coli HM605]
gi|430879262|gb|ELC02612.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE4]
gi|430889445|gb|ELC12106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE5]
gi|430969031|gb|ELC86193.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE189]
gi|430975131|gb|ELC92033.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE191]
gi|430996565|gb|ELD12841.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE205]
gi|431111068|gb|ELE14985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE55]
gi|431119871|gb|ELE22870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE57]
gi|431123204|gb|ELE25946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE58]
gi|431132465|gb|ELE34464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE62]
gi|431304772|gb|ELF93296.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE22]
gi|431329865|gb|ELG17150.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE59]
gi|431341100|gb|ELG28114.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE65]
gi|431350312|gb|ELG37124.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE84]
gi|431370312|gb|ELG56113.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE118]
gi|431374056|gb|ELG59651.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE123]
gi|431428412|gb|ELH10353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE192]
gi|431517584|gb|ELH95106.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE227]
gi|431534619|gb|ELI11099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE104]
gi|431539394|gb|ELI15145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE106]
gi|431545406|gb|ELI20061.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE109]
gi|431592521|gb|ELI63097.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE129]
gi|431648209|gb|ELJ15608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE157]
gi|431677981|gb|ELJ43993.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE176]
gi|431693120|gb|ELJ58537.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE180]
gi|431711126|gb|ELJ75485.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE85]
gi|432348179|gb|ELL42631.1| ATP-dependent RNA helicase RhlE [Escherichia coli J96]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222155523|ref|YP_002555662.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|386628337|ref|YP_006148057.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|386633257|ref|YP_006152976.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|386638150|ref|YP_006104948.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|387616054|ref|YP_006119076.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|416335171|ref|ZP_11671882.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|417661322|ref|ZP_12310903.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|419699658|ref|ZP_14227271.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|422364701|ref|ZP_16445212.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|422379081|ref|ZP_16459284.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|432380422|ref|ZP_19623377.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|432386249|ref|ZP_19629145.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|432396679|ref|ZP_19639464.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|432405614|ref|ZP_19648334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|432410799|ref|ZP_19653480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|432430847|ref|ZP_19673290.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|432435375|ref|ZP_19677774.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|432455662|ref|ZP_19697861.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|432470167|ref|ZP_19712219.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|432494600|ref|ZP_19736416.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|432503439|ref|ZP_19745174.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|432512992|ref|ZP_19750227.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|432522884|ref|ZP_19760021.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|432567630|ref|ZP_19804155.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|432591850|ref|ZP_19828177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|432606617|ref|ZP_19842810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|432610468|ref|ZP_19846639.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|432645226|ref|ZP_19881025.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|432650259|ref|ZP_19886019.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|432655024|ref|ZP_19890736.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|432679216|ref|ZP_19914615.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|432698104|ref|ZP_19933270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|432712457|ref|ZP_19947506.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|432722309|ref|ZP_19957232.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|432726851|ref|ZP_19961732.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|432731462|ref|ZP_19966298.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|432740537|ref|ZP_19975258.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|432744724|ref|ZP_19979423.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|432758541|ref|ZP_19993042.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|432782638|ref|ZP_20016822.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|432843102|ref|ZP_20076437.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|432893524|ref|ZP_20105536.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|432903336|ref|ZP_20112802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|432942848|ref|ZP_20140002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|432970909|ref|ZP_20159787.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|432977456|ref|ZP_20166279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|432984426|ref|ZP_20173163.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|432989850|ref|ZP_20178516.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|432994527|ref|ZP_20183141.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|432998946|ref|ZP_20187484.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|433037791|ref|ZP_20225403.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|433057090|ref|ZP_20244173.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|433076958|ref|ZP_20263520.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|433081679|ref|ZP_20268153.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|433086407|ref|ZP_20272802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|433100308|ref|ZP_20286415.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|433110072|ref|ZP_20295946.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|433114682|ref|ZP_20300496.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|433124341|ref|ZP_20309928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|433138401|ref|ZP_20323685.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|433143374|ref|ZP_20328540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|433148188|ref|ZP_20333252.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|433187583|ref|ZP_20371700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|433197356|ref|ZP_20381279.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|433206916|ref|ZP_20390611.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|433211664|ref|ZP_20395277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|442606347|ref|ZP_21021147.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
857C]
gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
gi|355419236|gb|AER83433.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i2']
gi|355424156|gb|AER88352.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. 'clone D
i14']
gi|380349203|gb|EIA37478.1| ATP-dependent RNA helicase RhlE [Escherichia coli SCI-07]
gi|430909170|gb|ELC30555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE16]
gi|430910737|gb|ELC32037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE15]
gi|430916999|gb|ELC38047.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE25]
gi|430931768|gb|ELC52202.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE28]
gi|430937297|gb|ELC57552.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE39]
gi|430955287|gb|ELC74070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE187]
gi|430965703|gb|ELC83112.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE188]
gi|430984389|gb|ELD01012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE201]
gi|430999345|gb|ELD15427.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE206]
gi|431027205|gb|ELD40268.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE214]
gi|431041485|gb|ELD51985.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE220]
gi|431044031|gb|ELD54311.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE224]
gi|431054194|gb|ELD63775.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE230]
gi|431102578|gb|ELE07392.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE53]
gi|431131766|gb|ELE33782.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE60]
gi|431140069|gb|ELE41846.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE67]
gi|431150809|gb|ELE51851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE72]
gi|431182457|gb|ELE82274.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE86]
gi|431192815|gb|ELE92159.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE87]
gi|431193934|gb|ELE93204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE93]
gi|431224276|gb|ELF21503.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE143]
gi|431246244|gb|ELF40510.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE169]
gi|431258590|gb|ELF51353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE8]
gi|431267386|gb|ELF58903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE17]
gi|431274639|gb|ELF65684.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE18]
gi|431277717|gb|ELF68721.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE45]
gi|431285128|gb|ELF75964.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE23]
gi|431294200|gb|ELF84380.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE43]
gi|431311130|gb|ELF99308.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE46]
gi|431331037|gb|ELG18300.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE63]
gi|431396873|gb|ELG80335.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE141]
gi|431424504|gb|ELH06600.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE165]
gi|431435780|gb|ELH17388.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE194]
gi|431452735|gb|ELH33146.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE183]
gi|431480967|gb|ELH60681.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE209]
gi|431486046|gb|ELH65703.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE207]
gi|431496725|gb|ELH76303.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE217]
gi|431505005|gb|ELH83628.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE215]
gi|431508740|gb|ELH87011.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE218]
gi|431513286|gb|ELH91369.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE223]
gi|431553961|gb|ELI27843.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE113]
gi|431573658|gb|ELI46455.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE124]
gi|431600236|gb|ELI69908.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE131]
gi|431605514|gb|ELI74903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE133]
gi|431609064|gb|ELI78397.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE137]
gi|431621765|gb|ELI90555.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE145]
gi|431630708|gb|ELI99036.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE150]
gi|431636392|gb|ELJ04523.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE153]
gi|431649148|gb|ELJ16507.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE160]
gi|431664579|gb|ELJ31313.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE167]
gi|431665476|gb|ELJ32194.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE168]
gi|431676301|gb|ELJ42421.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE174]
gi|431708583|gb|ELJ73091.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE88]
gi|431725002|gb|ELJ88915.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE94]
gi|431732132|gb|ELJ95588.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE97]
gi|431735862|gb|ELJ99206.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE99]
gi|441712423|emb|CCQ07124.1| ATP-dependent RNA helicase RhlE [Escherichia coli Nissle 1917]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
LSv54]
Length = 423
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + PS IQA A P ++EGK + A Q+G+GKT A+ LP+++
Sbjct: 2 SFNTLGLSAPLLKAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + + + RV+IL PT ELA+Q+ + + K G+ S V+ GG
Sbjct: 62 LLSQSK----RRVQANQARVLILTPTRELAAQIGESVTTYGK-GLSLTSAVIFGGVNINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L+ GVD+L+ATPGR + L ++ ++
Sbjct: 117 QMKRLRGGVDILVATPGRLLDLHRQNAIKF 146
>gi|424030597|ref|ZP_17770079.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|424039906|ref|ZP_17778182.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
gi|408881745|gb|EKM20608.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|408892448|gb|EKM29945.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
Length = 418
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 8/140 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++E+L N + P+ +Q + P V+EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIEQPLVETLGGLNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q++ +G+P+ +IL PT ELA QV+ N S + + V GG
Sbjct: 64 TVQQQK-------RNGTPQALILVPTRELAQQVMDNLTQYS-ANTDLKIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q + L+EG D+LIATPGR +
Sbjct: 116 QKKKLEEGADILIATPGRLL 135
>gi|421497715|ref|ZP_15944866.1| putative ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407183271|gb|EKE57177.1| putative ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 464
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGGRRQV----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
L+ ++ GVD+L+ATPGR + L+ +G L L
Sbjct: 117 NLDAIKLGVDILVATPGRLLDLLTQGALTL 146
>gi|153950343|ref|YP_001400107.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
31758]
gi|170023425|ref|YP_001719930.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis YPIII]
gi|152961838|gb|ABS49299.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
31758]
gi|169749959|gb|ACA67477.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
YPIII]
Length = 441
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +I++L+ + + RP+ IQA A PP ++G+ + + +G+GKT A+LLP +Q
Sbjct: 5 NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKY-TQLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|22652665|gb|AAN03793.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 309
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L K R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNG-----PKRKFNQVRALVLTPTRELAAQVHGSVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L+ GVDVL+ATPGR + L + ++ L
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQL 148
>gi|421081934|ref|ZP_15542834.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae CFBP 3304]
gi|401703334|gb|EJS93557.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae CFBP 3304]
Length = 441
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + RP+ IQA A PP +EG+ + + +G+GKT AYLLPV+Q
Sbjct: 5 NFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R+ + +TGG
Sbjct: 65 -----HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFA-AHTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|359440332|ref|ZP_09230253.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
gi|392533028|ref|ZP_10280165.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|358037869|dbj|GAA66502.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
Length = 434
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + EL ST+ +P ++LAPT ELA Q+ +N R +K + + + GG
Sbjct: 62 KLVESEL-----STTNAPHALVLAPTRELAEQIANNFRDFAKH-TSLKVVSLFGGVSTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L+EGVD+++ATPGR I+ G L L +++
Sbjct: 116 QANALKEGVDIVVATPGRLFDHIRLGNLSLASVK 149
>gi|422804761|ref|ZP_16853193.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
175-1]
gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
Length = 439
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|260854088|ref|YP_003227979.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
11368]
gi|415785215|ref|ZP_11492829.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|417295208|ref|ZP_12082464.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|419207940|ref|ZP_13751063.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|419214487|ref|ZP_13757510.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|419253551|ref|ZP_13796090.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|419259612|ref|ZP_13802056.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|419265751|ref|ZP_13808132.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|419271293|ref|ZP_13813617.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|419879319|ref|ZP_14400758.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|419886119|ref|ZP_14406771.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|419903986|ref|ZP_14422997.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|419910328|ref|ZP_14428852.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|420112198|ref|ZP_14622003.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|420117106|ref|ZP_14626474.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|420123029|ref|ZP_14631931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|420129457|ref|ZP_14637989.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|420135205|ref|ZP_14643297.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|424746487|ref|ZP_18174725.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424762635|ref|ZP_18190136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377700|ref|ZP_18762068.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
gi|378061114|gb|EHW23300.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8C]
gi|378067249|gb|EHW29374.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8D]
gi|378105091|gb|EHW66738.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10A]
gi|378114392|gb|EHW75948.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10B]
gi|378117330|gb|EHW78846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10C]
gi|378120824|gb|EHW82286.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10D]
gi|386261571|gb|EIJ17036.1| ATP-dependent RNA helicase RhlE [Escherichia coli 900105 (10e)]
gi|388332252|gb|EIK98931.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9534]
gi|388347103|gb|EIL12797.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9545]
gi|388368577|gb|EIL32204.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9942]
gi|388371735|gb|EIL35193.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10026]
gi|394382613|gb|EJE60242.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10224]
gi|394397074|gb|EJE73380.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9553]
gi|394402533|gb|EJE78247.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10021]
gi|394417988|gb|EJE91696.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM10030]
gi|394420435|gb|EJE93966.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CVM9952]
gi|408308877|gb|EKJ26102.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1865]
gi|421940874|gb|EKT98310.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421948130|gb|EKU05171.1| ATP-dependent RNA helicase RhlE [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
gi|386623197|ref|YP_006142925.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
gi|349736935|gb|AEQ11641.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|415803124|ref|ZP_11500296.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|415827804|ref|ZP_11514573.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|416345038|ref|ZP_11678681.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|417144495|ref|ZP_11986301.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|417161484|ref|ZP_11997720.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|417177330|ref|ZP_12006811.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|417180033|ref|ZP_12007741.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|417223820|ref|ZP_12027111.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|417242638|ref|ZP_12037855.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|417254717|ref|ZP_12046468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|417267555|ref|ZP_12054916.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|417601131|ref|ZP_12251713.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|417606902|ref|ZP_12257426.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|417622131|ref|ZP_12272456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|417665935|ref|ZP_12315497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|419225574|ref|ZP_13768459.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|419236763|ref|ZP_13779507.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|419242295|ref|ZP_13784942.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|419247811|ref|ZP_13790418.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|419277008|ref|ZP_13819269.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|419282779|ref|ZP_13824991.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|419288330|ref|ZP_13830440.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|419293682|ref|ZP_13835737.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|419299089|ref|ZP_13841102.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|419305383|ref|ZP_13847293.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|419310421|ref|ZP_13852292.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|419315707|ref|ZP_13857531.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|419321653|ref|ZP_13863385.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|419327782|ref|ZP_13869410.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|419333303|ref|ZP_13874859.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|419338624|ref|ZP_13880109.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|419374460|ref|ZP_13915511.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|419379737|ref|ZP_13920712.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|419384945|ref|ZP_13925844.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|419804719|ref|ZP_14329872.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|419870728|ref|ZP_14392820.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|419928780|ref|ZP_14446487.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|419952234|ref|ZP_14468408.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|420390263|ref|ZP_14889531.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|422775387|ref|ZP_16829043.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|423708718|ref|ZP_17683096.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|425423250|ref|ZP_18804418.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|432375905|ref|ZP_19618913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|432480171|ref|ZP_19722133.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|432812897|ref|ZP_20046742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|432830770|ref|ZP_20064353.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|432833878|ref|ZP_20067420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|432966894|ref|ZP_20155810.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
E24377A]
gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1357]
gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
gi|345353137|gb|EGW85373.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_94C]
gi|345364307|gb|EGW96433.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_DG131-3]
gi|345385199|gb|EGX15046.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_H.1.8]
gi|378080476|gb|EHW42438.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9A]
gi|378088482|gb|EHW50335.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9C]
gi|378093646|gb|EHW55450.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9D]
gi|378099976|gb|EHW61673.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9E]
gi|378132177|gb|EHW93529.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10E]
gi|378135208|gb|EHW96520.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11A]
gi|378138246|gb|EHW99504.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC10F]
gi|378145181|gb|EHX06347.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC11B]
gi|378151862|gb|EHX12964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11D]
gi|378155043|gb|EHX16103.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11C]
gi|378160136|gb|EHX21133.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC11E]
gi|378173088|gb|EHX33932.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12B]
gi|378173799|gb|EHX34632.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12A]
gi|378175241|gb|EHX36059.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC12C]
gi|378189533|gb|EHX50125.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12D]
gi|378193147|gb|EHX53688.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC12E]
gi|378224523|gb|EHX84725.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14B]
gi|378232924|gb|EHX93018.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14C]
gi|378236537|gb|EHX96583.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC14D]
gi|384472327|gb|EIE56385.1| ATP-dependent RNA helicase RhlE [Escherichia coli AI27]
gi|385707439|gb|EIG44470.1| ATP-dependent RNA helicase rhlE [Escherichia coli B799]
gi|386164378|gb|EIH26164.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2264]
gi|386174020|gb|EIH46021.1| ATP-dependent RNA helicase RhlE [Escherichia coli 99.0741]
gi|386175879|gb|EIH53361.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2608]
gi|386185388|gb|EIH68114.1| ATP-dependent RNA helicase RhlE [Escherichia coli 93.0624]
gi|386198868|gb|EIH97859.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.154]
gi|386211626|gb|EII22082.1| ATP-dependent RNA helicase RhlE [Escherichia coli 9.0111]
gi|386214999|gb|EII31496.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0967]
gi|386229913|gb|EII57268.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.3884]
gi|388338976|gb|EIL05370.1| ATP-dependent RNA helicase RhlE [Escherichia coli O103:H2 str.
CVM9450]
gi|388405146|gb|EIL65583.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-1]
gi|388412943|gb|EIL72969.1| ATP-dependent RNA helicase RhlE [Escherichia coli CUMT8]
gi|391314587|gb|EIQ72137.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli EPEC C342-62]
gi|397786486|gb|EJK97322.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_O31]
gi|408343465|gb|EKJ57866.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1288]
gi|430900533|gb|ELC22551.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE12]
gi|431009653|gb|ELD24267.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE210]
gi|431356103|gb|ELG42794.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE101]
gi|431379611|gb|ELG64540.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE135]
gi|431386759|gb|ELG70712.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE136]
gi|431472866|gb|ELH52700.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE203]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|422765321|ref|ZP_16819048.1| DEAD/DEAH box helicase [Escherichia coli E1520]
gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|419220091|ref|ZP_13763043.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
gi|378071325|gb|EHW33395.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8E]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|359454797|ref|ZP_09244066.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
gi|358048174|dbj|GAA80315.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
Length = 434
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + EL ST+ +P ++LAPT ELA Q+ +N R +K + + + GG
Sbjct: 62 KLVESEL-----STTNAPHALVLAPTRELAEQIANNFRDFAKH-TSLKVVSLFGGVSTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L+EGVD+++ATPGR I+ G L L +++
Sbjct: 116 QANALKEGVDIVVATPGRLFDHIRLGNLSLASVK 149
>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
196-1]
gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
Length = 438
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|387606349|ref|YP_006095205.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
Length = 454
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|432615625|ref|ZP_19851752.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
gi|431156800|gb|ELE57466.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE75]
Length = 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
D +F +LG + ++ ++ + + +P+ IQA A P V+ GK + Q+G+GKT A
Sbjct: 17 ADAVPEITFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAA 76
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+ LP++QR+ S S + P R +ILAPT ELA QV + ++ SK P R+M
Sbjct: 77 FTLPILQRIL--PFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSK-HTPIRAMCA 133
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG + Q+ L++GV++L+ATPGR +
Sbjct: 134 YGGVDIRPQIAELKKGVEILVATPGRLL 161
>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EDL933]
gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
Sakai]
gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4024]
gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209396359|ref|YP_002269466.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4115]
gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
TW14359]
gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|387505903|ref|YP_006158159.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|387881409|ref|YP_006311711.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|416309552|ref|ZP_11655924.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|416317432|ref|ZP_11660473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|416332189|ref|ZP_11670268.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|416781898|ref|ZP_11877367.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|416793131|ref|ZP_11882292.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|416804396|ref|ZP_11887151.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|416815421|ref|ZP_11891857.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97]
gi|416825253|ref|ZP_11896441.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|416836098|ref|ZP_11901713.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|419044083|ref|ZP_13591054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|419049436|ref|ZP_13596352.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|419055518|ref|ZP_13602371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|419061090|ref|ZP_13607869.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|419067186|ref|ZP_13613661.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|419074099|ref|ZP_13619667.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|419079198|ref|ZP_13624680.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|419084835|ref|ZP_13630244.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|419091085|ref|ZP_13636402.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|419096771|ref|ZP_13642013.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|419102575|ref|ZP_13647740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|419107936|ref|ZP_13653045.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|419113710|ref|ZP_13658740.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|419119348|ref|ZP_13664326.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|419125059|ref|ZP_13669956.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|419130595|ref|ZP_13675442.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|419135320|ref|ZP_13680126.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|420268096|ref|ZP_14770500.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|420273875|ref|ZP_14776207.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|420279271|ref|ZP_14781536.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|420285269|ref|ZP_14787484.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|420290983|ref|ZP_14793146.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|420296582|ref|ZP_14798675.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|420302895|ref|ZP_14804921.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|420308059|ref|ZP_14810031.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|420313779|ref|ZP_14815684.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|421811066|ref|ZP_16246865.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|421817148|ref|ZP_16252703.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|421822551|ref|ZP_16257988.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|421829288|ref|ZP_16264615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|423664723|ref|ZP_17639886.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|424082066|ref|ZP_17818917.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|424088699|ref|ZP_17824945.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|424108130|ref|ZP_17842696.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|424114123|ref|ZP_17848259.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|424120181|ref|ZP_17853874.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|424126420|ref|ZP_17859615.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|424145511|ref|ZP_17877271.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|424151642|ref|ZP_17882889.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|424190135|ref|ZP_17888328.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|424271705|ref|ZP_17894236.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|424425322|ref|ZP_17899959.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|424460367|ref|ZP_17911281.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|424473404|ref|ZP_17923064.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|424479335|ref|ZP_17928574.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|424485404|ref|ZP_17934260.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|424491576|ref|ZP_17939919.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|424498624|ref|ZP_17945886.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|424504858|ref|ZP_17951619.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|424511106|ref|ZP_17957321.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|424518644|ref|ZP_17963068.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|424524503|ref|ZP_17968517.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|424530707|ref|ZP_17974322.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|424536684|ref|ZP_17979934.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|424542601|ref|ZP_17985401.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|424548920|ref|ZP_17991111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|424555167|ref|ZP_17996880.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|424561523|ref|ZP_18002803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|424573744|ref|ZP_18014155.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|424579693|ref|ZP_18019614.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|425096364|ref|ZP_18499377.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|425102508|ref|ZP_18505148.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|425108313|ref|ZP_18510551.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|425124149|ref|ZP_18525707.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|425130179|ref|ZP_18531268.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|425136543|ref|ZP_18537257.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|425148733|ref|ZP_18548610.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|425154337|ref|ZP_18553879.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|425160784|ref|ZP_18559955.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|425166310|ref|ZP_18565111.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|425172598|ref|ZP_18570987.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|425178488|ref|ZP_18576530.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|425191392|ref|ZP_18588508.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|425197701|ref|ZP_18594343.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|425204368|ref|ZP_18600488.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|425210121|ref|ZP_18605847.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|425216172|ref|ZP_18611477.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|425222753|ref|ZP_18617595.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|425228981|ref|ZP_18623364.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|425235284|ref|ZP_18629238.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|425241281|ref|ZP_18634909.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|425247409|ref|ZP_18640604.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|425253144|ref|ZP_18646003.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|425259420|ref|ZP_18651779.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|425265567|ref|ZP_18657468.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|425292999|ref|ZP_18683570.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|425315656|ref|ZP_18704719.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|425327915|ref|ZP_18716122.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|425334099|ref|ZP_18721803.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|425340513|ref|ZP_18727738.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|425352617|ref|ZP_18738981.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|425358604|ref|ZP_18744561.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|425364714|ref|ZP_18750242.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|425371162|ref|ZP_18756108.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|425383958|ref|ZP_18767821.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|425390648|ref|ZP_18774088.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|425396767|ref|ZP_18779796.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|425402754|ref|ZP_18785345.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|425409293|ref|ZP_18791431.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|425415574|ref|ZP_18797194.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|425426707|ref|ZP_18807746.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|428951536|ref|ZP_19023643.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|428957401|ref|ZP_19029068.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|428963723|ref|ZP_19034884.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|428969936|ref|ZP_19040549.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|428976421|ref|ZP_19046575.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|428982032|ref|ZP_19051749.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|428988330|ref|ZP_19057597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|428994131|ref|ZP_19063022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|429000267|ref|ZP_19068753.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|429006446|ref|ZP_19074338.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|429012785|ref|ZP_19080022.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|429019038|ref|ZP_19085803.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|429031042|ref|ZP_19096893.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|429037193|ref|ZP_19102617.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|429043163|ref|ZP_19108143.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|429048882|ref|ZP_19113535.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|429054278|ref|ZP_19118758.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|429059931|ref|ZP_19124063.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|429065437|ref|ZP_19129277.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429071962|ref|ZP_19135308.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|429077288|ref|ZP_19140496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|429824529|ref|ZP_19355999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429830882|ref|ZP_19361698.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444923221|ref|ZP_21242900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444929524|ref|ZP_21248665.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444934814|ref|ZP_21253742.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444940413|ref|ZP_21259049.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444945962|ref|ZP_21264373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444951558|ref|ZP_21269771.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444957033|ref|ZP_21275021.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444962292|ref|ZP_21280031.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444973536|ref|ZP_21290805.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444979084|ref|ZP_21296069.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444984373|ref|ZP_21301233.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444989619|ref|ZP_21306350.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444994964|ref|ZP_21311552.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|445000476|ref|ZP_21316930.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|445005935|ref|ZP_21322265.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|445011046|ref|ZP_21327230.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|445016880|ref|ZP_21332922.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|445022315|ref|ZP_21338229.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|445027574|ref|ZP_21343342.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|445033074|ref|ZP_21348687.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|445038764|ref|ZP_21354226.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|445044065|ref|ZP_21359392.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|445049558|ref|ZP_21364714.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|445055210|ref|ZP_21370151.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
gi|452970952|ref|ZP_21969179.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC4009]
gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
EDL933]
gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
Sakai]
gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4196]
gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4113]
gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4076]
gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4401]
gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4486]
gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4501]
gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC869]
gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC508]
gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4206]
gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4045]
gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4042]
gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. EC4115]
gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
str. TW14588]
gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
CB9615]
gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
EC1212]
gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
G5101]
gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
493-89]
gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
2687]
gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
5905]
gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
LSU-61]
gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1125]
gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
1044]
gi|374357897|gb|AEZ39604.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
RM12579]
gi|377899702|gb|EHU64048.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3A]
gi|377901498|gb|EHU65814.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3B]
gi|377913110|gb|EHU77254.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3C]
gi|377917176|gb|EHU81241.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3D]
gi|377919854|gb|EHU83888.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3E]
gi|377931075|gb|EHU94945.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC3F]
gi|377933305|gb|EHU97150.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4A]
gi|377938207|gb|EHV01975.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4B]
gi|377949244|gb|EHV12884.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4C]
gi|377950209|gb|EHV13837.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4D]
gi|377953743|gb|EHV17307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4E]
gi|377964410|gb|EHV27845.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5A]
gi|377966303|gb|EHV29715.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC4F]
gi|377970991|gb|EHV34348.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5B]
gi|377978988|gb|EHV42266.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5C]
gi|377979166|gb|EHV42443.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC5D]
gi|377986469|gb|EHV49659.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC5E]
gi|386794867|gb|AFJ27901.1| ATP-dependent RNA helicase RhlE [Escherichia coli Xuzhou21]
gi|390649930|gb|EIN28402.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1996]
gi|390651672|gb|EIN29942.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA517]
gi|390669056|gb|EIN45761.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93-001]
gi|390687795|gb|EIN62940.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA3]
gi|390690684|gb|EIN65470.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA9]
gi|390691364|gb|EIN66112.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA5]
gi|390709283|gb|EIN82393.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA15]
gi|390719403|gb|EIN92128.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA22]
gi|390732457|gb|EIO04142.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA25]
gi|390732767|gb|EIO04441.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA24]
gi|390735327|gb|EIO06721.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA28]
gi|390751004|gb|EIO20976.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA31]
gi|390751421|gb|EIO21332.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA32]
gi|390761962|gb|EIO31232.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA40]
gi|390776912|gb|EIO44791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA42]
gi|390781177|gb|EIO48862.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA39]
gi|390784981|gb|EIO52537.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW06591]
gi|390794132|gb|EIO61431.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10246]
gi|390801014|gb|EIO68080.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW11039]
gi|390808163|gb|EIO75009.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW07945]
gi|390811320|gb|EIO78034.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09109]
gi|390818720|gb|EIO85089.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW10119]
gi|390821664|gb|EIO87843.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09098]
gi|390836280|gb|EIP00833.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4203]
gi|390838892|gb|EIP03069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4196]
gi|390839808|gb|EIP03888.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW09195]
gi|390854827|gb|EIP17604.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14301]
gi|390857889|gb|EIP20312.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW14313]
gi|390858020|gb|EIP20441.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4421]
gi|390870510|gb|EIP32011.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4422]
gi|390874956|gb|EIP36038.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4013]
gi|390884803|gb|EIP45069.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4402]
gi|390887323|gb|EIP47306.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4439]
gi|390893053|gb|EIP52621.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4436]
gi|390903454|gb|EIP62500.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1738]
gi|390908508|gb|EIP67331.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC4437]
gi|390911273|gb|EIP69978.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1734]
gi|390924107|gb|EIP81909.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1863]
gi|390925816|gb|EIP83448.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1845]
gi|408071615|gb|EKH05950.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA7]
gi|408075733|gb|EKH09965.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK920]
gi|408085388|gb|EKH19012.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA34]
gi|408089225|gb|EKH22556.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA506]
gi|408094017|gb|EKH27062.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA507]
gi|408101056|gb|EKH33525.1| ATP-dependent RNA helicase rhlE [Escherichia coli FDA504]
gi|408109307|gb|EKH41234.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK1999]
gi|408121072|gb|EKH52036.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE1487]
gi|408129264|gb|EKH59497.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE037]
gi|408130964|gb|EKH61025.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK2001]
gi|408140235|gb|EKH69770.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA4]
gi|408149439|gb|EKH78117.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA23]
gi|408151260|gb|EKH79768.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA49]
gi|408156447|gb|EKH84649.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA45]
gi|408166156|gb|EKH93774.1| ATP-dependent RNA helicase rhlE [Escherichia coli TT12B]
gi|408170867|gb|EKH98017.1| ATP-dependent RNA helicase rhlE [Escherichia coli MA6]
gi|408172863|gb|EKH99915.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5905]
gi|408186144|gb|EKI12251.1| ATP-dependent RNA helicase rhlE [Escherichia coli CB7326]
gi|408190165|gb|EKI15836.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5412]
gi|408190455|gb|EKI16100.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC96038]
gi|408232112|gb|EKI55365.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA38]
gi|408248415|gb|EKI70464.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1736]
gi|408258389|gb|EKI79660.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1846]
gi|408267432|gb|EKI87892.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1847]
gi|408268914|gb|EKI89236.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1848]
gi|408283982|gb|EKJ03111.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1850]
gi|408286629|gb|EKJ05548.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1856]
gi|408299401|gb|EKJ17202.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1862]
gi|408299864|gb|EKJ17629.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1864]
gi|408315484|gb|EKJ31799.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1868]
gi|408315913|gb|EKJ32211.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1866]
gi|408330454|gb|EKJ45717.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1869]
gi|408335464|gb|EKJ50310.1| ATP-dependent RNA helicase rhlE [Escherichia coli NE098]
gi|408336989|gb|EKJ51735.1| ATP-dependent RNA helicase rhlE [Escherichia coli EC1870]
gi|408349709|gb|EKJ63631.1| ATP-dependent RNA helicase rhlE [Escherichia coli FRIK523]
gi|408352595|gb|EKJ66139.1| ATP-dependent RNA helicase rhlE [Escherichia coli 0.1304]
gi|408557723|gb|EKK34146.1| ATP-dependent RNA helicase rhlE [Escherichia coli 5.2239]
gi|408557978|gb|EKK34393.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4870]
gi|408558710|gb|EKK35069.1| ATP-dependent RNA helicase rhlE [Escherichia coli 6.0172]
gi|408584545|gb|EKK59545.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0586]
gi|408588569|gb|EKK63141.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.2524]
gi|408589960|gb|EKK64459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0833]
gi|408605138|gb|EKK78667.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0416]
gi|408606641|gb|EKK80067.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.0221]
gi|408616341|gb|EKK89496.1| ATP-dependent RNA helicase rhlE [Escherichia coli 10.0821]
gi|427213706|gb|EKV83106.1| ATP-dependent RNA helicase rhlE [Escherichia coli 88.1042]
gi|427215415|gb|EKV84597.1| ATP-dependent RNA helicase rhlE [Escherichia coli 89.0511]
gi|427232964|gb|EKW00763.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.2281]
gi|427233069|gb|EKW00855.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0039]
gi|427234609|gb|EKW02286.1| ATP-dependent RNA helicase rhlE [Escherichia coli 90.0091]
gi|427250384|gb|EKW17055.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0056]
gi|427251916|gb|EKW18438.1| ATP-dependent RNA helicase rhlE [Escherichia coli 93.0055]
gi|427253243|gb|EKW19685.1| ATP-dependent RNA helicase rhlE [Escherichia coli 94.0618]
gi|427269502|gb|EKW34459.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0183]
gi|427269662|gb|EKW34614.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0943]
gi|427274177|gb|EKW38837.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.1288]
gi|427285696|gb|EKW49635.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0428]
gi|427292672|gb|EKW55999.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0939]
gi|427304283|gb|EKW66940.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0003]
gi|427305314|gb|EKW67909.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0932]
gi|427309391|gb|EKW71709.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0107]
gi|427320780|gb|EKW82514.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.1742]
gi|427321347|gb|EKW83041.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0007]
gi|427333180|gb|EKW94290.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0713]
gi|427333393|gb|EKW94498.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0678]
gi|427336332|gb|EKW97310.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0672]
gi|429259288|gb|EKY42985.1| ATP-dependent RNA helicase rhlE [Escherichia coli 96.0109]
gi|429261458|gb|EKY44900.1| ATP-dependent RNA helicase rhlE [Escherichia coli 97.0010]
gi|444541943|gb|ELV21373.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0814]
gi|444549573|gb|ELV27810.1| ATP-dependent RNA helicase rhlE [Escherichia coli 09BKT078844]
gi|444551365|gb|ELV29325.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0815]
gi|444564136|gb|ELV41093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0839]
gi|444566458|gb|ELV43291.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0816]
gi|444570293|gb|ELV46830.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0848]
gi|444581231|gb|ELV57093.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1753]
gi|444584375|gb|ELV60020.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1775]
gi|444598674|gb|ELV73587.1| ATP-dependent RNA helicase rhlE [Escherichia coli ATCC 700728]
gi|444599239|gb|ELV74129.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA11]
gi|444607041|gb|ELV81638.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1805]
gi|444613400|gb|ELV87659.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA19]
gi|444613514|gb|ELV87772.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA13]
gi|444621829|gb|ELV95797.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA2]
gi|444631187|gb|ELW04791.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA48]
gi|444631451|gb|ELW05049.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA47]
gi|444636219|gb|ELW09621.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA8]
gi|444646598|gb|ELW19600.1| ATP-dependent RNA helicase rhlE [Escherichia coli 7.1982]
gi|444649268|gb|ELW22169.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1781]
gi|444652588|gb|ELW25346.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.1762]
gi|444661713|gb|ELW34001.1| ATP-dependent RNA helicase rhlE [Escherichia coli PA35]
gi|444665877|gb|ELW37971.1| ATP-dependent RNA helicase rhlE [Escherichia coli 3.4880]
gi|444671957|gb|ELW43717.1| ATP-dependent RNA helicase rhlE [Escherichia coli 95.0083]
gi|444674008|gb|ELW45592.1| ATP-dependent RNA helicase rhlE [Escherichia coli 99.0670]
Length = 455
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|386702440|ref|YP_006166277.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
gi|383393967|gb|AFH18925.1| ATP-dependent RNA helicase RhlE [Escherichia coli KO11FL]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|417595796|ref|ZP_12246456.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
gi|345358931|gb|EGW91111.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3030-1]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
gi|170080456|ref|YP_001729776.1| ATP-dependent RNA helicase RhlE [Escherichia coli str. K-12 substr.
DH10B]
gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
gi|238900056|ref|YP_002925852.1| ATP-dependent RNA helicase RhlE [Escherichia coli BW2952]
gi|251784316|ref|YP_002998620.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
gi|254287688|ref|YP_003053436.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|378713847|ref|YP_005278740.1| DEAD/DEAH box helicase [Escherichia coli KO11FL]
gi|386279806|ref|ZP_10057482.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386596367|ref|YP_006092767.1| DEAD/DEAH box helicase [Escherichia coli DH1]
gi|386608116|ref|YP_006123602.1| RNA helicase [Escherichia coli W]
gi|386612960|ref|YP_006132626.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|386708558|ref|YP_006172279.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|387611339|ref|YP_006114455.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|387620524|ref|YP_006128151.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|388476882|ref|YP_489070.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
gi|404374120|ref|ZP_10979340.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|407468269|ref|YP_006785289.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407482998|ref|YP_006780147.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483550|ref|YP_006771096.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415812962|ref|ZP_11504956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|415860752|ref|ZP_11534467.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|415875932|ref|ZP_11542552.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|416286848|ref|ZP_11648633.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|417120582|ref|ZP_11970140.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|417130674|ref|ZP_11975945.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|417152584|ref|ZP_11991375.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|417229406|ref|ZP_12030992.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|417261194|ref|ZP_12048682.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|417274502|ref|ZP_12061842.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|417275438|ref|ZP_12062775.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|417290025|ref|ZP_12077308.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|417580058|ref|ZP_12230876.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|417611890|ref|ZP_12262362.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|417633416|ref|ZP_12283635.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|417638120|ref|ZP_12288287.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|417672819|ref|ZP_12322278.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|417831928|ref|ZP_12478449.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|417864079|ref|ZP_12509126.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|417945085|ref|ZP_12588322.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|417975121|ref|ZP_12615921.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|418042874|ref|ZP_12681057.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|418301699|ref|ZP_12913493.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|418958870|ref|ZP_13510779.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|419141314|ref|ZP_13686068.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|419146912|ref|ZP_13691603.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|419152706|ref|ZP_13697290.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|419158127|ref|ZP_13702644.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|419163060|ref|ZP_13707536.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|419168783|ref|ZP_13713177.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|419174163|ref|ZP_13718016.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|419179764|ref|ZP_13723387.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|419185324|ref|ZP_13728846.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|419190518|ref|ZP_13733985.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|419369058|ref|ZP_13910186.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|419390192|ref|ZP_13931029.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|419395363|ref|ZP_13936146.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|419405890|ref|ZP_13946592.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|419411382|ref|ZP_13952053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|419809588|ref|ZP_14334473.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|419925807|ref|ZP_14443635.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|419941037|ref|ZP_14457748.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|420347950|ref|ZP_14849344.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|420384419|ref|ZP_14883805.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|421776878|ref|ZP_16213479.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|422769987|ref|ZP_16823678.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|422785387|ref|ZP_16838126.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|422791573|ref|ZP_16844276.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|422819824|ref|ZP_16868034.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|422959077|ref|ZP_16971008.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|422991531|ref|ZP_16982302.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|422993473|ref|ZP_16984237.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|422998684|ref|ZP_16989440.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|423007145|ref|ZP_16997888.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|423008791|ref|ZP_16999529.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|423022979|ref|ZP_17013682.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|423028131|ref|ZP_17018824.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|423033965|ref|ZP_17024649.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|423036831|ref|ZP_17027505.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041950|ref|ZP_17032617.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048640|ref|ZP_17039297.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052222|ref|ZP_17041030.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059188|ref|ZP_17047984.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423701599|ref|ZP_17676058.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|425118864|ref|ZP_18520586.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|425271545|ref|ZP_18663041.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|427803888|ref|ZP_18970955.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|427808473|ref|ZP_18975538.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429723022|ref|ZP_19257911.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775196|ref|ZP_19307194.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429780383|ref|ZP_19312333.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784436|ref|ZP_19316345.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429789773|ref|ZP_19321645.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429796003|ref|ZP_19327826.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429801928|ref|ZP_19333703.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429805560|ref|ZP_19337304.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429811156|ref|ZP_19342855.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429816507|ref|ZP_19348163.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429821715|ref|ZP_19353327.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429907384|ref|ZP_19373352.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911585|ref|ZP_19377541.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917420|ref|ZP_19383360.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922458|ref|ZP_19388379.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923311|ref|ZP_19389227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932206|ref|ZP_19398100.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933808|ref|ZP_19399698.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939467|ref|ZP_19405341.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429947109|ref|ZP_19412964.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949741|ref|ZP_19415589.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429958019|ref|ZP_19423848.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432368810|ref|ZP_19611911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|432415781|ref|ZP_19658405.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|432484490|ref|ZP_19726410.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|432530124|ref|ZP_19767164.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|432533021|ref|ZP_19770012.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|432562727|ref|ZP_19799348.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|432579446|ref|ZP_19815877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|432626403|ref|ZP_19862384.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|432636070|ref|ZP_19871952.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|432660024|ref|ZP_19895674.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|432669700|ref|ZP_19905241.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|432684601|ref|ZP_19919913.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|432690689|ref|ZP_19925928.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|432703361|ref|ZP_19938480.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|432736297|ref|ZP_19971068.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|432749230|ref|ZP_19983844.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|432764118|ref|ZP_19998566.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|432804897|ref|ZP_20038838.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|432880532|ref|ZP_20097067.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|432933336|ref|ZP_20133004.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|432954097|ref|ZP_20146216.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|433046931|ref|ZP_20234342.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|433091124|ref|ZP_20277420.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|433129147|ref|ZP_20314616.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|433133962|ref|ZP_20319336.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|433172626|ref|ZP_20357179.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|433192762|ref|ZP_20376776.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|442595224|ref|ZP_21013074.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442599480|ref|ZP_21017198.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443616850|ref|YP_007380706.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|450212255|ref|ZP_21894522.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|450240632|ref|ZP_21899377.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
gi|548730|sp|P25888.3|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase RhlE
gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
1012]
gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11FL]
gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
155-74]
gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
gi|339413797|gb|AEJ55469.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli UMNF18]
gi|340735584|gb|EGR64641.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
01-09591]
gi|341917368|gb|EGT66984.1| hypothetical protein C22711_1012 [Escherichia coli O104:H4 str.
C227-11]
gi|342363259|gb|EGU27369.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH140A]
gi|342929072|gb|EGU97794.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 79-10]
gi|344195112|gb|EGV49182.1| ATP-dependent RNA helicase RhlE [Escherichia coli XH001]
gi|345343247|gb|EGW75637.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_B2F1]
gi|345365239|gb|EGW97348.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_EH250]
gi|345390130|gb|EGX19929.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_S1191]
gi|345395107|gb|EGX24859.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli TX1999]
gi|354856533|gb|EHF16991.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
04-8351]
gi|354857780|gb|EHF18233.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C227-11]
gi|354864548|gb|EHF24977.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
C236-11]
gi|354874861|gb|EHF35227.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
09-7901]
gi|354878821|gb|EHF39168.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4404]
gi|354882613|gb|EHF42935.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-3677]
gi|354884235|gb|EHF44548.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4522]
gi|354887292|gb|EHF47567.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4623]
gi|354900487|gb|EHF60621.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354903632|gb|EHF63732.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354905995|gb|EHF66077.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916912|gb|EHF76882.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354920973|gb|EHF80898.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-4632 C4]
gi|359331489|dbj|BAL37936.1| RNA helicase [Escherichia coli str. K-12 substr. MDS42]
gi|371595351|gb|EHN84201.1| ATP-dependent RNA helicase rhlE [Escherichia coli H494]
gi|377998929|gb|EHV62016.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6A]
gi|378000431|gb|EHV63502.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6B]
gi|378002941|gb|EHV65990.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6C]
gi|378012216|gb|EHV75148.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC6D]
gi|378015762|gb|EHV78653.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC6E]
gi|378018001|gb|EHV80868.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7A]
gi|378026949|gb|EHV89581.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7C]
gi|378032742|gb|EHV95323.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7D]
gi|378037020|gb|EHV99555.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC7B]
gi|378041755|gb|EHW04213.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC7E]
gi|378221719|gb|EHX81964.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC14A]
gi|378242955|gb|EHY02903.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15A]
gi|378250840|gb|EHY10743.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15B]
gi|378257173|gb|EHY17015.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15D]
gi|378261059|gb|EHY20856.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC15E]
gi|383404250|gb|AFH10493.1| ATP-dependent RNA helicase RhlE [Escherichia coli W]
gi|383474131|gb|EID66127.1| ATP-dependent RNA helicase RhlE [Escherichia coli W26]
gi|384378339|gb|EIE36221.1| DEAD/DEAH box helicase domain protein [Escherichia coli J53]
gi|385157769|gb|EIF19760.1| ATP-dependent RNA helicase RhlE [Escherichia coli O32:H37 str. P4]
gi|385536439|gb|EIF83332.1| ATP-dependent RNA helicase rhlE [Escherichia coli M919]
gi|385711895|gb|EIG48851.1| ATP-dependent RNA helicase rhlE [Escherichia coli H730]
gi|386123053|gb|EIG71654.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 4_1_40B]
gi|386149237|gb|EIG95669.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0246]
gi|386153782|gb|EIH05063.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0588]
gi|386169308|gb|EIH35816.1| ATP-dependent RNA helicase RhlE [Escherichia coli 96.0497]
gi|386205896|gb|EII10402.1| ATP-dependent RNA helicase RhlE [Escherichia coli 5.0959]
gi|386224321|gb|EII46656.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.3916]
gi|386232930|gb|EII64915.1| ATP-dependent RNA helicase RhlE [Escherichia coli 2.4168]
gi|386242091|gb|EII79004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3.2303]
gi|386256063|gb|EIJ05751.1| ATP-dependent RNA helicase RhlE [Escherichia coli B41]
gi|388385529|gb|EIL47208.1| ATP-dependent RNA helicase RhlE [Escherichia coli 541-15]
gi|388401755|gb|EIL62377.1| ATP-dependent RNA helicase RhlE [Escherichia coli 75]
gi|391270091|gb|EIQ28988.1| ATP-dependent RNA helicase rhlE [Shigella boydii 965-58]
gi|391309255|gb|EIQ66932.1| ATP-dependent RNA helicase rhlE [Escherichia coli EPECa12]
gi|404292334|gb|EJZ49160.1| ATP-dependent RNA helicase rhlE [Escherichia sp. 1_1_43]
gi|406778712|gb|AFS58136.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055295|gb|AFS75346.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064304|gb|AFS85351.1| ATP-dependent RNA helicase RhlE [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408197166|gb|EKI22433.1| ATP-dependent RNA helicase rhlE [Escherichia coli TW15901]
gi|408457992|gb|EKJ81782.1| ATP-dependent RNA helicase RhlE [Escherichia coli AD30]
gi|408572879|gb|EKK48760.1| ATP-dependent RNA helicase rhlE [Escherichia coli 8.0569]
gi|412962070|emb|CCK45984.1| putative ATP-dependent RNA helicase [Escherichia coli chi7122]
gi|412968652|emb|CCJ43277.1| putative ATP-dependent RNA helicase [Escherichia coli]
gi|429349931|gb|EKY86666.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02030]
gi|429350885|gb|EKY87608.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02033-1]
gi|429351021|gb|EKY87742.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02092]
gi|429365299|gb|EKZ01912.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02093]
gi|429366250|gb|EKZ02853.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02281]
gi|429368813|gb|EKZ05396.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02318]
gi|429381220|gb|EKZ17707.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-02913]
gi|429382188|gb|EKZ18653.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03439]
gi|429383623|gb|EKZ20082.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-03943]
gi|429395454|gb|EKZ31820.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
11-04080]
gi|429396668|gb|EKZ33016.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429397546|gb|EKZ33892.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409274|gb|EKZ45504.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417734|gb|EKZ53881.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421403|gb|EKZ57524.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429423143|gb|EKZ59251.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429427145|gb|EKZ63230.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434027|gb|EKZ70056.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429438014|gb|EKZ74008.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443370|gb|EKZ79322.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429449473|gb|EKZ85372.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429455349|gb|EKZ91205.1| ATP-dependent RNA helicase rhlE [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430888022|gb|ELC10745.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE10]
gi|430942326|gb|ELC62459.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE44]
gi|431017641|gb|ELD31096.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE212]
gi|431056498|gb|ELD65999.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE233]
gi|431062742|gb|ELD72002.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE234]
gi|431097945|gb|ELE03270.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE51]
gi|431107436|gb|ELE11601.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE56]
gi|431164351|gb|ELE64742.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE77]
gi|431172964|gb|ELE73045.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE81]
gi|431201896|gb|ELF00592.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE111]
gi|431212870|gb|ELF10791.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE119]
gi|431224108|gb|ELF21337.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE156]
gi|431229075|gb|ELF25727.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE161]
gi|431245926|gb|ELF40204.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE171]
gi|431285837|gb|ELF76672.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE42]
gi|431299242|gb|ELF88817.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE29]
gi|431312697|gb|ELG00686.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE48]
gi|431356509|gb|ELG43199.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE91]
gi|431412760|gb|ELG95559.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE154]
gi|431454978|gb|ELH35334.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE184]
gi|431469395|gb|ELH49324.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE197]
gi|431571170|gb|ELI44070.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE120]
gi|431613756|gb|ELI82925.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE138]
gi|431650869|gb|ELJ18177.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE163]
gi|431662039|gb|ELJ28849.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE166]
gi|431695617|gb|ELJ60919.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE232]
gi|431720457|gb|ELJ84486.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE90]
gi|441604670|emb|CCP98208.1| ATP-dependent RNA helicase RhlE [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441651750|emb|CCQ02695.1| ATP-dependent RNA helicase RhlE [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|443421358|gb|AGC86262.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O78]
gi|449322017|gb|EMD12021.1| ATP-dependent RNA helicase RhlE [Escherichia coli O08]
gi|449324310|gb|EMD14245.1| ATP-dependent RNA helicase RhlE [Escherichia coli S17]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|402569948|ref|YP_006619292.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402251145|gb|AFQ51598.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
Length = 481
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLQDLNYQVPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + L NL
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|422748197|ref|ZP_16802110.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|433011473|ref|ZP_20199877.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|433162588|ref|ZP_20347347.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
gi|431518088|gb|ELH95608.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE229]
gi|431691258|gb|ELJ56718.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE179]
Length = 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RTLILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|374262391|ref|ZP_09620958.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
gi|363537177|gb|EHL30604.1| hypothetical protein LDG_7373 [Legionella drancourtii LLAP12]
Length = 418
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ + PS IQA + P ++ G + + Q+G+GKT +++LP++Q
Sbjct: 2 SFTSLGLIEPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ S +V+IL PT ELA+QV + R K + RS VV GG +
Sbjct: 62 RLHNQ-----PRAKSNHTKVLILTPTRELAAQVHESIRQYGK-HLSLRSAVVFGGVKISP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GV++L+ATPGR M L ++ +Q
Sbjct: 116 QMMKLRGGVEILVATPGRLMDLYQQRAIQF 145
>gi|432717836|ref|ZP_19952831.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
gi|431265515|gb|ELF57079.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE9]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|430808618|ref|ZP_19435733.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
gi|429498999|gb|EKZ97465.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
Length = 423
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 5/144 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQ--GLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L + + G + P R ++L PT ELA+QV + R+ K + RSMV+ GG
Sbjct: 62 LLSESAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKY-LKLRSMVMFGGV 120
Query: 385 RQKTQLENLQEGVDVLIATPGRFM 408
Q+E L+ GVD+++ATPGR +
Sbjct: 121 GINPQIEALRRGVDIVVATPGRLL 144
>gi|417288603|ref|ZP_12075888.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
gi|386247395|gb|EII93568.1| ATP-dependent RNA helicase RhlE [Escherichia coli TW07793]
Length = 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|355621610|ref|ZP_09046211.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
gi|354823417|gb|EHF07748.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
Length = 477
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 6/157 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L S ++++L+ + ++ PS IQ A P V+ G+ + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
L + + SK R +IL PT ELA Q+ N + S+ V R V+ GG
Sbjct: 62 NLMKPSEKKYSKRVI---RSLILTPTRELALQIAENFKEYGSRTSV--RCAVIFGGVSAN 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+E L+ G+D+L+ATPGR L+ +G + L ++ +
Sbjct: 117 PQIEELRRGIDILVATPGRLNDLVGQGFVDLAHVEIF 153
>gi|422782366|ref|ZP_16835151.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE, partial [Escherichia coli MS
146-1]
gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
Length = 446
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 497
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 89/158 (56%), Gaps = 11/158 (6%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D +R +F +LG S ++++++ + P+ IQA A P V+ K I Q+G+GKT ++
Sbjct: 31 DILNRMTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASF 90
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVV 380
+LP+I ++ + + PR +IL PT ELA+QV N K G + ++
Sbjct: 91 VLPMI------DVMAAGRRRALMPRSLILEPTRELAAQVAEN---FEKYGANHDLKMALL 141
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
GG + QL+ L EGVDVLIATPGR M L + G + L
Sbjct: 142 IGGVQMGDQLKTLDEGVDVLIATPGRLMDLFERGKILL 179
>gi|432849252|ref|ZP_20080474.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
gi|431401252|gb|ELG84596.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE144]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLISRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
Length = 435
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++K + + P+ IQ+ + P ++ K + A Q+G+GKT + LP++Q
Sbjct: 2 SFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL+ K R +IL PT ELA+QV + + K +PF+S V+ GG
Sbjct: 62 RLKDSNF----KDKKTQVRALILTPTRELAAQVAQSVETYGKY-LPFKSAVIFGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++GVD++IATPGR + LI + L L + +
Sbjct: 117 QKALLKKGVDIIIATPGRLLDLISQDSLDLSKIEF 151
>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
gi|416268083|ref|ZP_11642051.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|416304675|ref|ZP_11653972.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|417681065|ref|ZP_12330444.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|420324512|ref|ZP_14826293.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|420353560|ref|ZP_14854672.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|420379143|ref|ZP_14878632.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|421681481|ref|ZP_16121307.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
3083-94]
gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
gi|391256040|gb|EIQ15179.1| ATP-dependent RNA helicase rhlE [Shigella flexneri CCH060]
gi|391278315|gb|EIQ37027.1| ATP-dependent RNA helicase rhlE [Shigella boydii 4444-74]
gi|391305618|gb|EIQ63398.1| ATP-dependent RNA helicase rhlE [Shigella dysenteriae 225-75]
gi|404341432|gb|EJZ67838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 1485-80]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase [Chlorobium phaeovibrioides DSM 265]
gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
DSM 265]
Length = 412
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 9/151 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F L D ++++L+ + + P+ IQA A P V++G + Q+G+GKT A+ +P++QR
Sbjct: 3 FSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L + +QG K R +I+ PT ELA Q+ S S G P + V+ GG Q
Sbjct: 63 LGESRVQGRIKKI----RSLIVTPTRELAIQI---GESFSAYGRHTPLTNTVIFGGVNQN 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L+ +G + L
Sbjct: 116 PQISRLKNGVDILVATPGRLLDLMNQGFINL 146
>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|417627721|ref|ZP_12277968.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|432453551|ref|ZP_19695788.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|433032291|ref|ZP_20220065.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
gi|345378025|gb|EGX09956.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_MHI813]
gi|430973690|gb|ELC90635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE193]
gi|431558677|gb|ELI32286.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE112]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|414070080|ref|ZP_11406069.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
gi|410807592|gb|EKS13569.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
Length = 434
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + EL ST+ +P ++LAPT ELA Q+ +N R +K + + + GG
Sbjct: 62 KLVESEL-----STTNAPHALVLAPTRELAEQIANNFRDFAK-HTSLKVVSLFGGVSTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L+EGVD+++ATPGR I+ G L L +++
Sbjct: 116 QANALKEGVDIVVATPGRLFDHIRLGNLSLASVK 149
>gi|423196519|ref|ZP_17183102.1| hypothetical protein HMPREF1171_01134 [Aeromonas hydrophila SSU]
gi|404632256|gb|EKB28883.1| hypothetical protein HMPREF1171_01134 [Aeromonas hydrophila SSU]
Length = 459
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ ++ G+D+L+ATPGR + L+ +G L L L
Sbjct: 116 NLDAIKLGIDILVATPGRLLDLLTQGALTLSEL 148
>gi|366160940|ref|ZP_09460802.1| ATP-dependent RNA helicase RhlE [Escherichia sp. TW09308]
gi|432371534|ref|ZP_19614587.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
gi|430898972|gb|ELC21078.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLISREPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP++
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ + R ++L PT ELA+QV + + K +P +S VV GG
Sbjct: 61 ----ELLSKGTKAPAKQVRALVLTPTRELAAQVGESVETYGK-NLPLKSAVVFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L GVD+L+ATPGR + L + L L
Sbjct: 116 QITKLNRGVDILVATPGRLLDLYNQRALSFSQL 148
>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 543
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 9/152 (5%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R +FK LG SD +I L Q P+ +Q A P V+EG+ I Q+G+GKTLA++LP+
Sbjct: 21 RLNFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPI 80
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++++ ++GS + +I+ PT ELA Q+ S + L + + V GG
Sbjct: 81 LEKI---------DPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDV 131
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ QL LQ +++ATPGR + ++ G +QL
Sbjct: 132 EKQLHKLQRQTQIVVATPGRLLDHLRRGTVQL 163
>gi|408788051|ref|ZP_11199774.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|424911054|ref|ZP_18334431.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847085|gb|EJA99607.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|408486129|gb|EKJ94460.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 490
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + + + R +ILAPT EL +Q+ N R+ K P R V GG
Sbjct: 63 MLMKQA----DRPANRTCRTLILAPTRELVNQIGENLRAFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G D+L+ATPGR + LI + L + +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTY 152
>gi|341884922|gb|EGT40857.1| hypothetical protein CAEBREN_11776 [Caenorhabditis brenneri]
Length = 518
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 269 SFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
SF++ G + ++ +K+ F +PS IQA +P ++ G+ CI Q+GSGKTLA+LLP
Sbjct: 85 SFEQAFGSNQAIMNEIKKNGFDKPSPIQAQMWPILLSGQDCIGVSQTGSGKTLAFLLPAF 144
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + Q + SP V++L+PT ELA Q+ + S G ++S+ + GG +K
Sbjct: 145 LHIDAQYKQYDANEKKPSPSVLVLSPTRELAQQIEGEVQKYSYNG--YKSVCLYGGGSRK 202
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+++ + G++++IATPGR L +G++ L ++ +
Sbjct: 203 EQVDSCKGGIEIVIATPGRLTDLSNDGVISLASVTY 238
>gi|416896375|ref|ZP_11926222.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|417118486|ref|ZP_11969004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
gi|422800154|ref|ZP_16848652.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|386138020|gb|EIG79180.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
Length = 910
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 5/152 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E +Y++ +K+Q F RP+ IQ+ +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 225 QNFEEGNFPEYVMTEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGL 284
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQ 386
+ ++ LS+ P V++LAPT ELA Q+ + R P R V GG +
Sbjct: 285 VHISHQKP--LSRGE--GPIVLVLAPTRELAQQIQTVVRDFGNHSKPNIRYTCVFGGALK 340
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +L+ GV+V+IATPGR + ++ GI L
Sbjct: 341 GPQVRDLERGVEVVIATPGRLIDFLERGITNL 372
>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
Length = 442
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 11/144 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF++ + ++ ++ + P+ IQ A P++ G+ + Q+G+GKT AY+LP+I
Sbjct: 3 KSFEDFKFNRQILNAIADAEYKEPTAIQQKAITPILAGQDVMGIAQTGTGKTAAYVLPII 62
Query: 328 QRLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+L K GS PR +IL+PT ELA Q+ N + +K R++V+ GG
Sbjct: 63 MKL---------KYAQGSDPRALILSPTRELAMQIEENIQLFAKY-TDLRTVVLYGGLGP 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFL 410
K Q+E L++GVD+L+ATPGRF+ L
Sbjct: 113 KQQIEALEKGVDILVATPGRFLDL 136
>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|417585601|ref|ZP_12236377.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|422332390|ref|ZP_16413404.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|432352753|ref|ZP_19596037.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|432400987|ref|ZP_19643741.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|432425043|ref|ZP_19667558.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|432459813|ref|ZP_19701970.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|432474903|ref|ZP_19716911.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|432488391|ref|ZP_19730277.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|432521485|ref|ZP_19758641.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|432536852|ref|ZP_19773769.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|432630413|ref|ZP_19866357.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|432640011|ref|ZP_19875851.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|432665080|ref|ZP_19900666.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|432773985|ref|ZP_20008271.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|432838408|ref|ZP_20071897.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|432885207|ref|ZP_20099802.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|432911150|ref|ZP_20117631.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|433017767|ref|ZP_20206028.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|433052168|ref|ZP_20239394.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|433067044|ref|ZP_20253870.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|433157777|ref|ZP_20342642.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|433177329|ref|ZP_20361779.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|433202290|ref|ZP_20386089.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
gi|345340250|gb|EGW72669.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli
STEC_C165-02]
gi|373246701|gb|EHP66153.1| ATP-dependent RNA helicase rhlE [Escherichia coli 4_1_47FAA]
gi|430877681|gb|ELC01115.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE2]
gi|430927585|gb|ELC48148.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE26]
gi|430958277|gb|ELC76871.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE181]
gi|430991096|gb|ELD07512.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE204]
gi|431008411|gb|ELD23212.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE208]
gi|431023274|gb|ELD36471.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE213]
gi|431044549|gb|ELD54821.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE228]
gi|431072429|gb|ELD80180.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE235]
gi|431173448|gb|ELE73524.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE80]
gi|431184527|gb|ELE84284.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE83]
gi|431203485|gb|ELF02142.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE116]
gi|431319983|gb|ELG07635.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE54]
gi|431390874|gb|ELG74522.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE140]
gi|431419190|gb|ELH01548.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE158]
gi|431443866|gb|ELH24891.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE190]
gi|431536139|gb|ELI12470.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE105]
gi|431574944|gb|ELI47701.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE122]
gi|431589985|gb|ELI61099.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE128]
gi|431681153|gb|ELJ46959.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE177]
gi|431709238|gb|ELJ73708.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE82]
gi|431725326|gb|ELJ89181.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE95]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|302847799|ref|XP_002955433.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
gi|300259275|gb|EFJ43504.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
Length = 554
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 3/157 (1%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPV 326
+SF++LG ++ +L P+ IQ+++ P ++ + + LA +GSGKTLAYLLP+
Sbjct: 74 RSFEQLGLQTPLVSALYGMGITEPTDIQSISIPALMNQPGNYFLASHTGSGKTLAYLLPL 133
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+Q L+QEE G PRV++L PT EL Q+ + L V FR+
Sbjct: 134 VQALKQEEASGFVPRPK-RPRVLVLGPTRELTDQITGVAKKLCHT-VKFRATCANADTSI 191
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q + +DVL+ATP RF+ IKEG + ++RW
Sbjct: 192 SQQARAMSGPIDVLVATPTRFLHHIKEGNVAYRDIRW 228
>gi|433659531|ref|YP_007300390.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus BB22OP]
gi|432510918|gb|AGB11735.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus BB22OP]
Length = 522
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + R +IL PT ELA+QV N + +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRANQVRALILTPTRELAAQVQENVFMYGRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|402771172|ref|YP_006590709.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401773192|emb|CCJ06058.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 442
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +L+R+ + P+ +QA + P +++G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L + + R +ILAPT ELA+Q+ + RS P ++V GG +
Sbjct: 62 RL----LADKRRPAPNTARALILAPTRELAAQIADSFRSYGHFFRPSVGVIV-GGVSHRP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q E L G+DVL+ATPGR + + G L+L
Sbjct: 117 QNEMLARGLDVLVATPGRLLDHLGSGRLRL 146
>gi|398804512|ref|ZP_10563506.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398093685|gb|EJL84061.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 575
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + +++++ Q + P+ IQA A P V++G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLKGVDLLGGAQTGTGKTAAFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E + ++ + R +I+ PT ELA+QV + R+ K SMV+ GG
Sbjct: 62 RL-STEARLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKY-TDLTSMVMFGGVGMGA 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E L+ GVD+L+ATPGR + +G L L
Sbjct: 120 QIEKLRRGVDILVATPGRLLDHASQGTLDL 149
>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|415824802|ref|ZP_11513036.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|417193204|ref|ZP_12015051.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|417209507|ref|ZP_12020791.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|417590515|ref|ZP_12241230.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|419195910|ref|ZP_13739314.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|419202149|ref|ZP_13745371.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|419887299|ref|ZP_14407895.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|419894549|ref|ZP_14414445.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|420088816|ref|ZP_14600676.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|420094200|ref|ZP_14605802.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|424769471|ref|ZP_18196698.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli OK1180]
gi|345344461|gb|EGW76828.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2534-86]
gi|378051718|gb|EHW14033.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC8A]
gi|378055793|gb|EHW18054.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC8B]
gi|386190385|gb|EIH79133.1| ATP-dependent RNA helicase RhlE [Escherichia coli 4.0522]
gi|386196132|gb|EIH90358.1| ATP-dependent RNA helicase RhlE [Escherichia coli JB1-95]
gi|388363164|gb|EIL27104.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9570]
gi|388363386|gb|EIL27315.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9574]
gi|394389606|gb|EJE66748.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9602]
gi|394396885|gb|EJE73216.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H8 str.
CVM9634]
gi|421944120|gb|EKU01382.1| RNA helicase RhlE [Escherichia coli O111:H8 str. CFSAN001632]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 12/155 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ Q + P+ IQA A P V+EG+ + Q+G+GKT + LP++Q
Sbjct: 2 SFENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L + +TS SP R +IL PT ELA+QV + ++ K +P +S VV GG
Sbjct: 62 ------LLSIHANTSTSPAKHPVRALILTPTRELAAQVEESVQTYGKY-LPLKSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
K Q+ L+ GV++L+ATPGR + +++ + L
Sbjct: 115 VNIKEQIAALKGGVEILVATPGRLLDHVEQKTVNL 149
>gi|419344419|ref|ZP_13885801.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|419348857|ref|ZP_13890210.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|419353846|ref|ZP_13895128.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
gi|419359241|ref|ZP_13900466.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378188847|gb|EHX49441.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13A]
gi|378204519|gb|EHX64935.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13B]
gi|378206700|gb|EHX67102.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13D]
gi|378207818|gb|EHX68206.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC13C]
Length = 445
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 481
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + + + G+ R + GG
Sbjct: 62 RLVQRG----PAVSSNRARVLVLVPTRELAEQVLQSFIAYGR-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 598
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++S+K+ + +PS IQ+ + P ++ GK I Q+G+GKT A+ LP++
Sbjct: 9 SFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLS 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++++LAPT ELA QV C+S +K + + GG +
Sbjct: 69 RL---------DAKDNNTQLLVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDI 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL L+ G +++ TPGR M I+ G L+L NL+
Sbjct: 120 QLRQLKRGAQIVVGTPGRVMDHIRRGTLKLDNLK 153
>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
Length = 447
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
Length = 449
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|432873837|ref|ZP_20093105.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
gi|431404432|gb|ELG87683.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE147]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|386815861|ref|ZP_10103079.1| ATP-dependent RNA helicase CsdA [Thiothrix nivea DSM 5205]
gi|386420437|gb|EIJ34272.1| ATP-dependent RNA helicase CsdA [Thiothrix nivea DSM 5205]
Length = 638
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++++++ + PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 10 AFSELGLAAPVLQAVQELGYETPSAIQAETIPYLLEGRDVLGQAQTGTGKTAAFALPLLS 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ST+G P+++ILAPT ELA QV C+ + F M + GG +T
Sbjct: 70 RL--------DLSTTG-PQILILAPTRELAIQVAEACQKYAAHLPGFHVMPIYGGQDYRT 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L+ GV V++ TPGR M ++ L+L NL+
Sbjct: 121 QFRQLERGVHVVVGTPGRVMDHLRRETLKLDNLQ 154
>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|386068049|ref|YP_005983353.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|348036608|dbj|BAK91968.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
Length = 449
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|355639459|ref|ZP_09051174.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|392982323|ref|YP_006480910.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|419756955|ref|ZP_14283300.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421172786|ref|ZP_15630547.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|354831879|gb|EHF15883.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|384396710|gb|EIE43128.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317828|gb|AFM63208.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404537189|gb|EKA46803.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 449
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|359451210|ref|ZP_09240620.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
gi|358042989|dbj|GAA76869.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
Length = 438
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +ILAPT ELA QV N +K S VV GG +
Sbjct: 62 RLSTG-----PKAKSNHVRALILAPTRELALQVSENVEEYAKHS-NVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|157371914|ref|YP_001479903.1| ATP-dependent RNA helicase SrmB [Serratia proteamaculans 568]
gi|157323678|gb|ABV42775.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 441
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +I +L+ + + RP+ IQA A PP ++G+ + + +G+GKT A+LLPV+Q
Sbjct: 5 NFSELELDERLINALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PRV+IL PT ELA QV R L+ +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELA-AHTSLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|430377251|ref|ZP_19431384.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
macacae 0408225]
gi|429540388|gb|ELA08417.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
macacae 0408225]
Length = 613
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 87/152 (57%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ +++S+++ + P+ IQA A P +EG+ +L+ Q+GSGKT A++LP++ +
Sbjct: 53 FADLGLSNILLKSIEKTGYTTPTPIQAKAIPVAIEGRDLLLSAQTGSGKTAAFVLPILHQ 112
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S + + +IL PT ELA QV + R S+ + GG Q
Sbjct: 113 LSNTPAIKTKQHKSKAVKALILTPTRELAHQVSDSIRRYGSSMRDLFSVPLVGGSAYGGQ 172
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++GV ++IATPGR + I G + L +L
Sbjct: 173 IRALKKGVQIIIATPGRLLDHISAGRVDLSDL 204
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G + ++++L Q ++ P+ IQA A P V++G + A Q+G+GKT + LP+IQ
Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L ++S SP R +IL PT ELA QV +N ++ S+ P RS+VV GG
Sbjct: 85 LMAH------ANSSASPARHPVRALILTPTRELADQVAANVKAYSRH-TPLRSLVVFGGM 137
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + +++ + L
Sbjct: 138 DMTPQTAALRGGVEIVIATPGRLLDHVQQKTINL 171
>gi|417137678|ref|ZP_11981468.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
gi|386159242|gb|EIH15575.1| ATP-dependent RNA helicase RhlE [Escherichia coli 97.0259]
Length = 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|422835705|ref|ZP_16883758.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
gi|371611884|gb|EHO00403.1| ATP-dependent RNA helicase rhlE [Escherichia coli E101]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|422970694|ref|ZP_16974206.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
gi|371600132|gb|EHN88909.1| ATP-dependent RNA helicase rhlE [Escherichia coli TA124]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|359784697|ref|ZP_09287863.1| ATP-dependent RNA helicase RhlE [Halomonas sp. GFAJ-1]
gi|359297842|gb|EHK62064.1| ATP-dependent RNA helicase RhlE [Halomonas sp. GFAJ-1]
Length = 417
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 10/152 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG D ++ ++ Q + +P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLHDDLLRAVTAQGYTQPTPIQLKAIPVVLEGRDLLASAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
RL + + R ++L PT ELA+QV S+S G + RS ++ GG Q
Sbjct: 62 RLANGK-----RPAKRQVRALVLTPTRELAAQV---GESVSAYGQHLALRSHIIFGGVGQ 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q++ L+ G+DVL+ATPGR + L ++G + L
Sbjct: 114 QPQVDALKAGLDVLVATPGRLLDLQQQGHVDL 145
>gi|415836765|ref|ZP_11519063.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|417282857|ref|ZP_12070155.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|425276656|ref|ZP_18667983.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
gi|386244062|gb|EII85794.1| ATP-dependent RNA helicase RhlE [Escherichia coli 3003]
gi|408206357|gb|EKI31167.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli
ARS4.2123]
Length = 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase, partial [Escherichia coli MS 116-1]
gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
Length = 433
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|422827999|ref|ZP_16876172.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
gi|371615757|gb|EHO04145.1| ATP-dependent RNA helicase rhlE [Escherichia coli B093]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
Length = 359
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 88/150 (58%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ ++++++ + P+ IQA A PP++ K I Q+G+GKT +++LP+I
Sbjct: 2 SFADLGLSEDLLKAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + + PR +ILAPT ELA+QV N K + ++ GG +
Sbjct: 61 -----DVMASGRRRALMPRSLILAPTRELAAQVAENFEKYGKNH-DLKLALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L EGVDVLIATPGR M L + G + L
Sbjct: 115 QIKALNEGVDVLIATPGRLMDLFERGKILL 144
>gi|432945988|ref|ZP_20141726.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|433042299|ref|ZP_20229823.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
gi|431462321|gb|ELH42535.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE196]
gi|431559502|gb|ELI33055.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE117]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|425304306|ref|ZP_18694089.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
gi|408231316|gb|EKI54593.1| ATP-dependent RNA helicase rhlE [Escherichia coli N1]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|398931338|ref|ZP_10665140.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398163790|gb|EJM51940.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 446
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL+ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K T+ S R +IL PT ELA QV R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVTANSVRALILVPTRELAEQVHEAVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRSGVDLLVATPGRLLDLFRQNALKFNQLQ 150
>gi|347760077|ref|YP_004867638.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579047|dbj|BAK83268.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 445
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 93/153 (60%), Gaps = 5/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + +P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYTQPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ ++ R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREK----GRAHPKGARALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+E L+ GVDVL+A PGR + L+ +G + L L
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGL 150
>gi|417711406|ref|ZP_12360409.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|417716231|ref|ZP_12365163.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|417826857|ref|ZP_12473430.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|420319296|ref|ZP_14821149.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
gi|335576625|gb|EGM62870.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri J1713]
gi|391253484|gb|EIQ12657.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 2850-71]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|419917866|ref|ZP_14436087.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
gi|388392900|gb|EIL54301.1| ATP-dependent RNA helicase RhlE [Escherichia coli KD2]
Length = 452
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + L NL
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P +S V+ GG
Sbjct: 62 LLSRG-----NRAQAKKVRALVLTPTRELAAQVAESVETYGKY-LPLKSAVIFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L +GVD+L+ATPGR + L +G + L
Sbjct: 116 QISKLGKGVDILVATPGRLLDLYNQGAVNFNQL 148
>gi|398873687|ref|ZP_10628940.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398198842|gb|EJM85794.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
Length = 446
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL+ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K T+ S R +IL PT ELA QV R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVTANSVRALILVPTRELAEQVHEAVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRSGVDLLVATPGRLLDLFRQNALKFNQLQ 150
>gi|386618245|ref|YP_006137825.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|387828776|ref|YP_003348713.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|432420873|ref|ZP_19663428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|432499009|ref|ZP_19740785.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|432557779|ref|ZP_19794468.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|432693549|ref|ZP_19928760.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|432709596|ref|ZP_19944661.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|432918019|ref|ZP_20122424.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|432925309|ref|ZP_20127338.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|432980270|ref|ZP_20169048.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|433095692|ref|ZP_20281903.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|433104902|ref|ZP_20290920.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
gi|333968746|gb|AEG35551.1| ATP-dependent RNA helicase [Escherichia coli NA114]
gi|430946490|gb|ELC66413.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE178]
gi|431031680|gb|ELD44418.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE216]
gi|431093857|gb|ELD99513.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE49]
gi|431236215|gb|ELF31428.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE162]
gi|431251298|gb|ELF45315.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE6]
gi|431446200|gb|ELH26949.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE173]
gi|431448030|gb|ELH28748.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE175]
gi|431493165|gb|ELH72759.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE211]
gi|431618950|gb|ELI87878.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE139]
gi|431633658|gb|ELJ01921.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE148]
Length = 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 452
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 91/149 (61%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +L + + P+ IQ P ++EG+ + Q+G+GKT +++LP++ R
Sbjct: 4 FSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E K+ R +IL+PT EL++Q+L N R S+ + S +V GG + Q
Sbjct: 64 LIEENRPTHPKTC----RALILSPTRELSAQILENVRGYSRH-MRVSSTLVVGGVKPGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ L +GVDVL+ATPGR + L++ G ++L
Sbjct: 119 IRALSKGVDVLVATPGRLLDLMQSGAVKL 147
>gi|426411630|ref|YP_007031729.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
gi|426269847|gb|AFY21924.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
Length = 446
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL+ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K T+ S R +IL PT ELA QV R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVTANSVRALILVPTRELAEQVHEAVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRSGVDLLVATPGRLLDLFRQNALKFNQLQ 150
>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
Length = 454
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
Length = 500
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +++ Q + P+ IQA A P V++G + Q+G+GKT + LP++Q
Sbjct: 2 NFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + S+ + R ++L PT ELA+QV + R+ K +P SMV+ GG +
Sbjct: 62 RLSASKPVRDSRGRI-AVRALVLTPTRELAAQVEESVRAYGKY-LPLTSMVMFGGVGMQP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L++GVD+L+ATPGR + +G L L
Sbjct: 120 QIDRLRKGVDILVATPGRLLDHHGQGTLDL 149
>gi|417690323|ref|ZP_12339547.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
Length = 441
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|417322060|ref|ZP_12108594.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
Length = 522
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + R +IL PT ELA+QV N + +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRANQVRALILTPTRELAAQVQENVFMYGRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
2210633]
gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
2210633]
gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
Length = 522
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + R +IL PT ELA+QV N + +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRANQVRALILTPTRELAAQVQENVFMYGRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|268532748|ref|XP_002631502.1| Hypothetical protein CBG20666 [Caenorhabditis briggsae]
Length = 502
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 268 KSFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
K+FKE G + ++ +++ F +PS IQ+ +P ++ G+ CI Q+GSGKTLA+LLP
Sbjct: 83 KTFKEAFGHNQSIMNEIQKNGFEKPSPIQSQMWPILLSGQDCIGVSQTGSGKTLAFLLPA 142
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ + Q SP V++L+PT ELA Q+ + S G ++S+ + GG +
Sbjct: 143 FLHIDAQLAQYDKNEKKPSPSVLVLSPTRELAQQIEGEVKKYSYNG--YKSVCLYGGGSR 200
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+++ + GV+++IATPGR L +G++ L ++ +
Sbjct: 201 SEQVQSCKGGVEIVIATPGRLTDLSNDGVISLASVTY 237
>gi|398954425|ref|ZP_10675961.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|398152444|gb|EJM40963.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
Length = 446
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL+ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K T+ S R +IL PT ELA QV R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVTANSVRALILVPTRELAEQVHEAVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRSGVDLLVATPGRLLDLFRQNALKFNQLQ 150
>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
Length = 432
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L S ++++L+ + + PS IQ A P V+ GK + Q+G+GKT A+ LP+IQ
Sbjct: 2 TFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + SK R +IL PT ELA Q+ N + P R V+ GG
Sbjct: 62 NLMRPSDKKHSKRVI---RSLILTPTRELALQIAENFKEYG-SHTPVRCAVIFGGVSAVP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ LQ G+D+L+ATPGR LI +G + L ++ +
Sbjct: 118 QIKELQRGIDILVATPGRLNDLIHQGEISLSHVEMF 153
>gi|326471484|gb|EGD95493.1| DEAD box helicase [Trichophyton tonsurans CBS 112818]
Length = 594
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF++ G M+ ++K ++ P+ +QA P V+ G I Q+GSGKT A+L+PV+
Sbjct: 127 KSFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVL 186
Query: 328 QRL----------RQEELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
RL R + G ++S P V+I+ PT ELA+Q+ R L
Sbjct: 187 SRLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLC----- 241
Query: 375 FRSM----VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRW 423
+RSM V+ GG + Q LQ+G D+LIATPGR + F+ K IL L +R+
Sbjct: 242 YRSMLRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRY 295
>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM573]
gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM603]
gi|424809155|ref|ZP_18234540.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
SX-4]
gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM603]
gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM573]
gi|342323580|gb|EGU19364.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
SX-4]
Length = 422
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ + + S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPW--VREENSKEIRALVLVPTRELAQQVLDSMQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
Length = 517
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + R +IL PT ELA+QV N + +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRANQVRALILTPTRELAAQVQENVFMYGRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQL 148
>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|418587191|ref|ZP_13151225.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418592075|ref|ZP_13155953.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|421152185|ref|ZP_15611773.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|421518498|ref|ZP_15965172.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|375042196|gb|EHS34856.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049103|gb|EHS41612.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|404347980|gb|EJZ74329.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404525815|gb|EKA36064.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 449
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|421178877|ref|ZP_15636479.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|404547823|gb|EKA56806.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
Length = 449
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|126440586|ref|YP_001057787.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668]
gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
668]
Length = 485
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + + +L
Sbjct: 119 QIDALKRGVDIVVATPGRLLDHMQQKTIDVSSL 151
>gi|449145922|ref|ZP_21776717.1| ATP-dependent RNA helicase [Vibrio mimicus CAIM 602]
gi|449078310|gb|EMB49249.1| ATP-dependent RNA helicase [Vibrio mimicus CAIM 602]
Length = 422
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDPHLLNTLSDLGIVNPTLIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ + + S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPW--VREENSKEIRALVLVPTRELAQQVLDSMQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
Length = 422
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ + + S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPW--VREENSKEIRALVLVPTRELAQQVLDSMQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
Length = 449
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase [Candidatus Solibacter usitatus Ellin6076]
gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 422
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 10/156 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S + +L + NF P+ IQ++A P + GK + Q+G+GKTLA+LLP IQ
Sbjct: 3 NFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQ 62
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q G+ R +IL PT ELA Q+ +++ G R+ V GG ++
Sbjct: 63 LLSTEPRQPGV--------RALILTPTRELALQINEALLQIAR-GTGIRAAVAVGGLNER 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+QL +++ G ++++ATPGR + G++ L +R
Sbjct: 114 SQLRDIRGGANIVVATPGRLYDFMSRGLINLTTVRM 149
>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
16M]
gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase [Brucella melitensis ATCC 23457]
gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
16M]
gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
23457]
Length = 535
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|326481784|gb|EGE05794.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
Length = 594
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF++ G M+ ++K ++ P+ +QA P V+ G I Q+GSGKT A+L+PV+
Sbjct: 127 KSFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVL 186
Query: 328 QRL----------RQEELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
RL R + G ++S P V+I+ PT ELA+Q+ R L
Sbjct: 187 SRLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLC----- 241
Query: 375 FRSM----VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRW 423
+RSM V+ GG + Q LQ+G D+LIATPGR + F+ K IL L +R+
Sbjct: 242 YRSMLRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRY 295
>gi|451987161|ref|ZP_21935321.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
gi|451755216|emb|CCQ87844.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
Length = 449
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|406911902|gb|EKD51608.1| hypothetical protein ACD_62C00220G0002 [uncultured bacterium]
Length = 421
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 8/142 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++++++ Q + P+ IQ A P ++ + + + Q+G+GKT + LP++Q
Sbjct: 2 SFENLGLSPELLQAVQGQGYSVPTPIQTKAIPLILNKQDILGSAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
RL E+ G K R +IL PT ELA+QV C+S+ G +P RS VV GG
Sbjct: 62 RLMLEKKNGGGKR---HIRALILTPTRELAAQV---CKSVETYGKHLPLRSTVVFGGVNM 115
Query: 387 KTQLENLQEGVDVLIATPGRFM 408
+ Q+ LQ GVD+++ATPGR +
Sbjct: 116 EAQVRRLQYGVDIVVATPGRLL 137
>gi|333928701|ref|YP_004502280.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333933654|ref|YP_004507232.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386330524|ref|YP_006026694.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|421785069|ref|ZP_16221503.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica A30]
gi|333475261|gb|AEF46971.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333492761|gb|AEF51923.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333962857|gb|AEG29630.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
gi|407752786|gb|EKF62935.1| ATP-dependent RNA helicase SrmB [Serratia plymuthica A30]
Length = 441
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +I++L + + RP+ IQA A PP ++G+ + + +G+GKT A+LLPV+Q
Sbjct: 5 NFSELDLDERLIKALSDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PRV+IL PT ELA QV R L+ +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELA-AHTSLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E DV++AT GR + IKE
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKE 143
>gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 471
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q K P R +IL PT ELA+Q+ N ++ SK + RS+VV GG
Sbjct: 62 LLTSREAQ--HKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LSLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDL 141
>gi|403057992|ref|YP_006646209.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402805318|gb|AFR02956.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 470
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 84/143 (58%), Gaps = 4/143 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q K P R +IL PT ELA+Q+ N ++ SK + RS+VV GG
Sbjct: 62 LLTSREAQ--HKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LSLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDL 141
>gi|336124562|ref|YP_004566610.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335342285|gb|AEH33568.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 430
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 9/149 (6%)
Query: 263 DFFS---RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
DF + R F LG SD +++++ + P+ IQ A P ++ GK+ I A Q+G+GKT
Sbjct: 11 DFLTLRARMPFSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKT 70
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
+++LP++Q L Q Q + R +ILAPT ELA QV N +K +P +
Sbjct: 71 ASFVLPILQMLSQGTTQRAKRV-----RALILAPTRELALQVEENVTQYAKY-LPLTCLA 124
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFM 408
+ GG + Q + L EGVD+LIATPGR +
Sbjct: 125 MYGGVDSQKQKQRLIEGVDILIATPGRLL 153
>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 475
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG ++ ++++L Q + +P+ IQ A P +++ I Q+G+GKT A+ +P +Q
Sbjct: 3 FKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ + ++ R ++L PT ELA Q+ N K + RS VV GG Q+ Q
Sbjct: 63 LKE---KAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKY-MDLRSTVVFGGVAQRYQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ L+ GVD LIATPGR L+ +G + L + +
Sbjct: 119 VKALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIF 153
>gi|410627645|ref|ZP_11338382.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
gi|410152719|dbj|GAC25151.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
Length = 435
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + + R ++L PT ELA+QV ++ K +P RS VV GG
Sbjct: 62 LLNRG-----THARGNQARALVLTPTRELAAQVAASVVDYGK-DLPLRSAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + ++ +L
Sbjct: 116 QMIKLRKGVDILVATPGRLLDLYNQNAVRFDDL 148
>gi|406676813|ref|ZP_11083998.1| hypothetical protein HMPREF1170_02206 [Aeromonas veronii AMC35]
gi|404625127|gb|EKB21944.1| hypothetical protein HMPREF1170_02206 [Aeromonas veronii AMC35]
Length = 462
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ ++ GVD+L+ATPGR + L+ +G L L L
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQL 148
>gi|315046986|ref|XP_003172868.1| ATP-dependent RNA helicase DED1 [Arthroderma gypseum CBS 118893]
gi|311343254|gb|EFR02457.1| ATP-dependent RNA helicase DED1 [Arthroderma gypseum CBS 118893]
Length = 596
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 92/174 (52%), Gaps = 23/174 (13%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF E G M+ ++K ++ P+ +QA P V+ G I Q+GSGKT A+L+PV+
Sbjct: 127 KSFDEAGLHPIMLNNIKLCGYVVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVL 186
Query: 328 QRL----------RQEELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
RL R + G ++S P V+I+ PT ELA+Q+ R L
Sbjct: 187 SRLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLC----- 241
Query: 375 FRSM----VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRW 423
+RSM V+ GG + Q LQ+G D+LIATPGR + F+ K IL L +R+
Sbjct: 242 YRSMLRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMDKPHILSLCRVRY 295
>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
Length = 488
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + + +L
Sbjct: 119 QIDALKRGVDIVVATPGRLLDHMQQKTIDVSSL 151
>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
T6c]
Length = 435
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + + R ++L PT ELA+QV ++ K +P RS VV GG
Sbjct: 62 LLNRG-----THARGNQARALVLTPTRELAAQVAASVVDYGK-DLPLRSAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + ++ +L
Sbjct: 116 QMIKLRKGVDILVATPGRLLDLYNQNAVRFDDL 148
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANASASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFM 408
Q E L+ G +VL+ATPGR +
Sbjct: 135 PQKEALRRGCEVLVATPGRLL 155
>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
Length = 535
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase [Brucella canis ATCC 23365]
gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
ATCC 25840]
gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
Length = 535
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|383937020|ref|ZP_09990435.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
gi|383701930|dbj|GAB60526.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
Length = 437
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 6/139 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ S++ F++P+ IQA A P V+ G+ I++ Q+GSGKTLAYLLP++QR
Sbjct: 3 FNDLALDPRLLRSVQHLGFVKPTDIQAEAIPAVMVGRDLIVSSQTGSGKTLAYLLPMMQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + LSK + R +ILAPT ELA QV + R L P S ++ GG Q
Sbjct: 63 LLKS--RPLSKRDA---RALILAPTRELAKQVYAQLR-LFVANTPLTSALIVGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFM 408
+ L+ D+++ATPGRF+
Sbjct: 117 EKLLKREPDIIVATPGRFV 135
>gi|340362171|ref|ZP_08684568.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
gi|339887772|gb|EGQ77294.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
Length = 457
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L + VD+++ATPGR M L++ G + L
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFARL 151
>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|432673792|ref|ZP_19909281.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
gi|431217166|gb|ELF14746.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE142]
Length = 454
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 508
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F LG ++ ++ ++ + P+ IQA A P V+ G + A Q+G+GKT + LP
Sbjct: 3 SEANFAGLGLAEPLLRAISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V+ RL + +G PR +IL PT ELA+QV + R+ K +P SMV+ GG
Sbjct: 63 VLHRLSAAP---AANPKAGRPRCLILTPTRELAAQVEESVRTYGKH-LPTTSMVMFGGVG 118
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L++ VD+L+ATPGR + + + L L
Sbjct: 119 INPQIQALKKRVDILVATPGRLLDHVGQKTLDL 151
>gi|399023038|ref|ZP_10725105.1| DNA/RNA helicase, superfamily II [Chryseobacterium sp. CF314]
gi|398083597|gb|EJL74302.1| DNA/RNA helicase, superfamily II [Chryseobacterium sp. CF314]
Length = 420
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 92/156 (58%), Gaps = 6/156 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++L+++ + +P+ IQ A P ++E K + Q+G+GKT A+ +P++Q
Sbjct: 3 FTDLKIIKPILDALQKEGYEKPTPIQQKAIPSILERKDVLGTAQTGTGKTAAFAIPILQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L + + +IL PT ELA Q+ + + + +P + +V+ GG +Q +Q
Sbjct: 63 LTERPL-----PKNNYIKALILTPTRELAIQIEESFNAYGR-NLPLKKLVIFGGVKQGSQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
L++GVD+L+ATPGR + I +GI+ L NL +
Sbjct: 117 EAALRKGVDILVATPGRLLDFIAQGIISLKNLEIFV 152
>gi|420251223|ref|ZP_14754408.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398058303|gb|EJL50202.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 481
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +Q A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA Q+L + + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQLLQSFIAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
Length = 421
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++ +L + P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ + + S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPW--VREENSKEIRALVLVPTRELAQQVLDSMQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 432
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F +L + ++ +L +++P+ IQA + P ++EG+ + Q+G+GKT ++ LP
Sbjct: 5 SAQAFADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALP 64
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL + RV++LAPT EL SQ+ S S+ P R + GG
Sbjct: 65 LLHRLAATP----RPAPKNGARVLVLAPTRELVSQIADGFESFSRHQ-PVRVTTIFGGVS 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q Q++ L+EGVD+++A PGR + LI++G+ L L
Sbjct: 120 QVHQVKALEEGVDIIVAAPGRLLDLIEQGLCDLSQL 155
>gi|423201820|ref|ZP_17188399.1| hypothetical protein HMPREF1167_01982 [Aeromonas veronii AER39]
gi|404615767|gb|EKB12726.1| hypothetical protein HMPREF1167_01982 [Aeromonas veronii AER39]
Length = 467
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ ++ GVD+L+ATPGR + L+ +G L L L
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQL 148
>gi|392541116|ref|ZP_10288253.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 473
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + + +++ Q + +P+ IQ A P ++EG+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSHLGLAPEINQAVVEQGYDKPTPIQEQAIPAILEGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + G +K + + R +IL PT ELA QV + SK +P S VV GG +
Sbjct: 62 KL----IAG-TKPRANNVRALILTPTRELADQVWQSVALYSKH-LPISSEVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++G+DVL+ATPGR + L ++ ++ +L
Sbjct: 116 QMMKLRKGIDVLVATPGRLLDLYQQNAVKFDDL 148
>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase [Burkholderia cenocepacia HI2424]
gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 507
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 25 SFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 84
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 85 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 139
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 140 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 169
>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 463
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L + +L + + P+ IQ ++ P +++ + I Q+G+GKT A++LP++Q
Sbjct: 2 SFDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ K+T PRV++LAPT ELA+Q+ + + K ++ VV GG Q
Sbjct: 62 NMSAIH----KKATPKKPRVLVLAPTRELAAQIGESFATYGKY-TRYKHTVVFGGVGQTP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ L GVD L+ATPGR + LI++G ++L N+ ++
Sbjct: 117 QVRALSRGVDCLVATPGRLLDLIQQGHIKLSNVEYF 152
>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens Pf0-1]
gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
Length = 446
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL++ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPVVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K T+ S R +IL PT ELA QV R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVTANSVRALILVPTRELAEQVHEAVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L+ GVD+L+ATPGR + L ++ L+ L+
Sbjct: 117 QMMKLRGGVDLLVATPGRLLDLFRQNALKFNQLQ 150
>gi|398385616|ref|ZP_10543635.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397720142|gb|EJK80702.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 469
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVNEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L++GVDVLIATPGR M L + G + L
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILL 144
>gi|386057057|ref|YP_005973579.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|347303363|gb|AEO73477.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
Length = 449
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|427722229|ref|YP_007069506.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427353949|gb|AFY36672.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 430
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG S ++ ++ +N+ + IQ A PP+++G+ + + Q+G+GKT + LP+++R
Sbjct: 3 FQTLGLSSEILRAVVDENYSEATPIQEQAIPPILQGRDILASAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K S +PR +IL PT ELA QV + + K +P + +V+ GG K Q
Sbjct: 63 LSEVPF----KKGSRAPRALILTPTRELAIQVSESVNTYGKY-LPLKPVVIYGGVNIKRQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
++ LQ G D+++ATPGR + + + + L ++ +
Sbjct: 118 IQGLQRGCDIVVATPGRLLDHVFQKTIDLSHIEIFV 153
>gi|390448328|ref|ZP_10233949.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
gi|389666297|gb|EIM77749.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
Length = 453
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++++ + F+ P IQ A P ++E + + Q+GSGKT A+ LP++ +
Sbjct: 12 FAELGISGALLKAAEDVGFVTPKPIQEKAIPAMLEKRDVLGIAQTGSGKTAAFSLPILSQ 71
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + SK + R +IL PT ELA Q+ R LS+ + +V GG + +Q
Sbjct: 72 I----IALGSKRVRKTARALILCPTRELAVQIDDVVRELSRHA-HLATALVLGGVSRNSQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ L +GVD+L+ATPGR +++ G L L RW
Sbjct: 127 VKRLAQGVDILVATPGRLTDIVRSGELSLAETRWL 161
>gi|422763931|ref|ZP_16817684.1| DEAD/DEAH box helicase [Escherichia coli E1167]
gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
Length = 454
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|410617786|ref|ZP_11328751.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola polaris LMG
21857]
gi|410162917|dbj|GAC32889.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola polaris LMG
21857]
Length = 435
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + + R ++L PT ELA+QV ++ K +P RS VV GG
Sbjct: 62 LLNRG-----THARGNQARALVLTPTRELAAQVAASVVDYGK-DLPLRSAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + ++ +L
Sbjct: 116 QMIKLRKGVDILVATPGRLLDLYNQNAVRFDDL 148
>gi|423206363|ref|ZP_17192919.1| hypothetical protein HMPREF1168_02554 [Aeromonas veronii AMC34]
gi|404621915|gb|EKB18780.1| hypothetical protein HMPREF1168_02554 [Aeromonas veronii AMC34]
Length = 467
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ ++ GVD+L+ATPGR + L+ +G L L L
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQL 148
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ + PS IQA A PPV++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSPELLRAIEELGYETPSPIQAQAIPPVIQGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R L G + S R ++L PT ELA+QV + K + S VV GG +
Sbjct: 62 R-----LAGGKSAKSNHVRALVLTPTRELAAQVNGSVVKYGKY-LNVNSNVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++G DVL+ATPGR + L ++ ++ L
Sbjct: 116 QMMKLRKGSDVLVATPGRLLDLYQQNAVKFSQL 148
>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
Length = 454
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase [Ochrobactrum anthropi ATCC 49188]
gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
49188]
Length = 464
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 17 FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 76
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 77 I-----IGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHA-HISTALVLGGVSKLS 130
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 131 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 165
>gi|330829948|ref|YP_004392900.1| putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|423209349|ref|ZP_17195903.1| hypothetical protein HMPREF1169_01421 [Aeromonas veronii AER397]
gi|328805084|gb|AEB50283.1| Putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|404617207|gb|EKB14143.1| hypothetical protein HMPREF1169_01421 [Aeromonas veronii AER397]
Length = 462
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L+ ++ GVD+L+ATPGR + L+ +G L L L
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQL 148
>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
gi|383177421|ref|YP_005455426.1| ATP-dependent RNA helicase RhlE [Shigella sonnei 53G]
gi|414575042|ref|ZP_11432248.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|415850222|ref|ZP_11527142.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|418263069|ref|ZP_12884253.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
gi|420357517|ref|ZP_14858525.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|420362435|ref|ZP_14863351.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
gi|391287551|gb|EIQ46075.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3226-85]
gi|391287991|gb|EIQ46500.1| ATP-dependent RNA helicase rhlE [Shigella sonnei 3233-85]
gi|391296008|gb|EIQ54124.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei 4822-66]
gi|397902862|gb|EJL19172.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella sonnei str. Moseley]
Length = 454
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDYLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
Length = 507
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 25 SFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 84
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 85 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 139
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 140 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 169
>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. BTAi1]
Length = 469
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 5/155 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ L GVDVL+ATPGR + L++ L+L + +
Sbjct: 118 QVRALMPGVDVLVATPGRLLDLVQGNALKLTQVEF 152
>gi|336066223|ref|YP_004561081.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296169|dbj|BAK32040.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 475
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 4/155 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG ++ ++++L Q + +P+ IQ A P +++ I Q+G+GKT A+ +P +Q
Sbjct: 3 FKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ + ++ R ++L PT ELA Q+ N K + RS VV GG Q+ Q
Sbjct: 63 LKE---KAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKY-MDLRSTVVFGGVAQRYQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
++ L+ GVD LIATPGR L+ +G + L + +
Sbjct: 119 VKALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIF 153
>gi|327305867|ref|XP_003237625.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
gi|326460623|gb|EGD86076.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
Length = 594
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF++ G M+ ++K +L P+ +QA P V+ G I Q+GSGKT A+L+PV+
Sbjct: 127 KSFEDAGLHPIMLNNIKLCGYLVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVL 186
Query: 328 QRL----------RQEELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
+L R + G ++S P V+I+ PT ELA+Q+ R L
Sbjct: 187 SKLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLC----- 241
Query: 375 FRSM----VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRW 423
+RSM V+ GG + Q LQ+G D+LIATPGR + F+ K IL L +R+
Sbjct: 242 YRSMLRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRY 295
>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
Length = 510
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|62289973|ref|YP_221766.1| DEAD/DEAH box helicase [Brucella abortus bv. 1 str. 9-941]
gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
gi|423170781|ref|ZP_17157456.1| hypothetical protein M19_01314 [Brucella abortus bv. 1 str. NI474]
gi|423177576|ref|ZP_17164222.1| hypothetical protein M1E_01818 [Brucella abortus bv. 1 str. NI488]
gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
bv. 1 str. 9-941]
gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Brucella melitensis biovar Abortus 2308]
gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
gi|374539359|gb|EHR10863.1| hypothetical protein M19_01314 [Brucella abortus bv. 1 str. NI474]
gi|374550058|gb|EHR21499.1| hypothetical protein M1E_01818 [Brucella abortus bv. 1 str. NI488]
Length = 531
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + L NL
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|404319172|ref|ZP_10967105.1| DEAD/DEAH box helicase [Ochrobactrum anthropi CTS-325]
Length = 471
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 24 FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 83
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 84 I-----IGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHA-HISTALVLGGVSKLS 137
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 138 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 172
>gi|386284070|ref|ZP_10061293.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
gi|385344973|gb|EIF51686.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
Length = 429
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 86/140 (61%), Gaps = 5/140 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +++++K Q + P+ IQ A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTNLGLSEPLLKAIKEQGYDTPTPIQQQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + K R ++L PT ELA+QV + ++ K +P+ S V+ GG
Sbjct: 62 KLSKTQ----PKMHKKQIRALVLTPTRELAAQVAESIKTYGKH-LPYTSTVIFGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +++GV+++IATPGR +
Sbjct: 117 QLAAIRKGVEIVIATPGRLL 136
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG Q E L+ GV++LIATPGR +
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLL 149
>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
Length = 516
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQ---EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L + + G + + R ++L PT ELA+QV + R+ K + RSMV+ GG
Sbjct: 62 LLSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKY-LRLRSMVMFGGVG 120
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E L+ GV++++ATPGR + + + + L
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDL 153
>gi|85711185|ref|ZP_01042245.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85695098|gb|EAQ33036.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 404
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
++EL D +I LK +P+++Q A P ++G +++ +G+GKTLA+LLPV+Q
Sbjct: 5 WQELELDDALISVLKAAGLNKPAKVQQAALPAAMDGHDLLISSPTGTGKTLAFLLPVLQ- 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + G+ R +ILAPT ELA Q+ + + S+VVTGG +Q
Sbjct: 64 ----HMMDFPRKQPGAARALILAPTRELAEQIYQQA-EMFRALTELSSVVVTGGVNYGSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
L L++ D++IATPGR + L++ +L + W
Sbjct: 119 LSRLEQSHDIVIATPGRLLDLLEAEQYELEAVEW 152
>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 426
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +I ++ + +P+ IQ + P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 2 SFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ L+ S S + SP R +IL PT ELA+QV S+ R K + SMV+ GG
Sbjct: 62 LLSQDSLK--SASNASSPIRALILTPTRELAAQVESSVRDYGKY-LKLNSMVMFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q + L+ VD+L+ATPGR + +++G + L
Sbjct: 119 PQKQRLKGRVDILVATPGRLLDHVQQGTVNL 149
>gi|347971748|ref|XP_001688456.2| AGAP004351-PA [Anopheles gambiae str. PEST]
gi|333469011|gb|EDO64138.2| AGAP004351-PA [Anopheles gambiae str. PEST]
Length = 713
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 89/145 (61%), Gaps = 5/145 (3%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++E L++Q F P+ IQA A+P ++ G+ I Q+G+GKTLA+LLP + + E Q +
Sbjct: 317 LMEELRKQKFTTPTPIQAQAWPILLRGEDLIGIAQTGTGKTLAFLLPALIHI---EGQPI 373
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
+ G P V++LAPT ELA Q+ G+ +++ + GG ++ Q+ ++ GV+
Sbjct: 374 PRGERGGPNVLVLAPTRELALQIEKEVAKYQFRGI--KAVCLYGGGDRRAQINVVRNGVE 431
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
+LIATPGR L++EG++ + + +
Sbjct: 432 ILIATPGRLNDLVQEGVVDVSTITY 456
>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
Length = 423
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 6/155 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++ +LK + + + IQ A P ++ K + Q+G+GKT A+ LP++Q
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPILQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ +E+ G G+ + +ILAPT ELA Q+ + ++ +K +P V+ GG Q Q
Sbjct: 63 IMEEKTVG-----KGAIKALILAPTRELAIQIGESFQTYAKY-LPLNIQVIFGGVSQNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
L+ G D+LIATPGR + LI++G ++L + ++
Sbjct: 117 TATLKRGTDILIATPGRLLDLIRQGFVKLNQVEFF 151
>gi|110833595|ref|YP_692454.1| DEAD/DEAH box helicase [Alcanivorax borkumensis SK2]
gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
borkumensis SK2]
Length = 459
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG D + ++ + + PS IQA A P V+ G+ + A Q+G+GKT + LP+++R
Sbjct: 3 FSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSP------RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
LR +GSP R ++L PT ELA+QV + + K +P S VV GG
Sbjct: 63 LR-----------TGSPARNNQVRALVLTPTRELAAQVAESVATYGK-NLPLTSTVVFGG 110
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ Q++ L+ G DVL+ATPGR + L ++ ++ +L
Sbjct: 111 VKINPQMQRLRGGCDVLVATPGRLLDLYQQNAVKFDHL 148
>gi|425080638|ref|ZP_18483735.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|428933930|ref|ZP_19007468.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
gi|405605773|gb|EKB78777.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|426304047|gb|EKV66201.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae JHCK1]
Length = 451
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLILNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDL 139
>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
mellifera]
Length = 726
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 9/153 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 106 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 165
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + S P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 166 VHINHQP----RLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 218
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q +L+ GV++ IATPGR + +++G L
Sbjct: 219 KGPQARDLERGVEICIATPGRLIDFLEKGTTNL 251
>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
E2348/69]
gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|417754655|ref|ZP_12402746.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|418995949|ref|ZP_13543556.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|419001015|ref|ZP_13548567.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|419006513|ref|ZP_13553966.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|419012350|ref|ZP_13559714.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|419017347|ref|ZP_13564666.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|419022935|ref|ZP_13570176.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|419027809|ref|ZP_13575002.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|419033704|ref|ZP_13580800.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|419038617|ref|ZP_13585671.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
gi|377847939|gb|EHU12936.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1A]
gi|377849589|gb|EHU14558.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1C]
gi|377852750|gb|EHU17664.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1B]
gi|377861973|gb|EHU26787.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC1D]
gi|377865803|gb|EHU30593.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC1E]
gi|377867945|gb|EHU32694.1| ATP-dependent RNA helicase rhlE [Escherichia coli DEC2A]
gi|377878098|gb|EHU42686.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2B]
gi|377882881|gb|EHU47412.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2D]
gi|377884294|gb|EHU48807.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2C]
gi|377897502|gb|EHU61881.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC2E]
Length = 453
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 YLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + L NL
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|424902243|ref|ZP_18325759.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
gi|390932618|gb|EIP90018.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 482
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 90/153 (58%), Gaps = 3/153 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HTFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSAVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + + +L
Sbjct: 119 QIDALKRGVDIVVATPGRLLDHMQQKTIDVSSL 151
>gi|300722435|ref|YP_003711723.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
Length = 498
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ LG ++ +++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 NFESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + Q + R +IL PT ELA+QV N + SK + RS VV GG
Sbjct: 62 RLSESPTQVKGRRPV---RALILTPTRELAAQVGENVHNYSKY-LKLRSFVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+L+ATPGR + L + + L
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDL 147
>gi|334343993|ref|YP_004552545.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334100615|gb|AEG48039.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 454
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYH-KLNMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL+ L++GVDVLIATPGR M L + G + L
Sbjct: 115 QLKALEKGVDVLIATPGRLMDLFQRGKILL 144
>gi|452749107|ref|ZP_21948877.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
gi|452006933|gb|EMD99195.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
Length = 440
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ +L ++ P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIEPLLRTLDTLDYRTPTPVQAKAIPVVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++G+DVL+ATPGR + L ++ + L+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQ 150
>gi|429094723|ref|ZP_19157248.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
gi|426740207|emb|CCJ83361.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
Length = 479
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLR--QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL Q QG R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTTSQPHPQGRRPV-----RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVLIATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLIATPGRLLDLEHQNAVKL 147
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + P+ IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 15 SFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P +S VV GG
Sbjct: 75 LLSRG-----NRAQAKKVRALVLTPTRELAAQVAESVDTYGKY-LPLKSAVVFGGVGIGP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L +GVD+L+ATPGR + L +G + L
Sbjct: 129 QISKLGKGVDILVATPGRLLDLYNQGAVNFNQL 161
>gi|298207628|ref|YP_003715807.1| ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559]
gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 424
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +++SL Q + +P+ IQA + P +++G+ + + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPIIQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L E +G K S +I+ PT ELA Q+ N + K +S V+ GG Q
Sbjct: 62 HLANDLENAKGKRKILS-----LIVTPTRELAIQIGENFSAYGKY-TSLKSTVIFGGVPQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
+ Q L+ GVDVLIATPGR + L+ +G + L +++++
Sbjct: 116 RAQTNKLKSGVDVLIATPGRLLDLMDQGYISLKDVKYFV 154
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 12/158 (7%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
GG Q E L+ GV++LIATPGR + +++ L
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANL 159
>gi|390574051|ref|ZP_10254201.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389933989|gb|EIM95967.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 481
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +Q A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA Q+L + + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQLLQSFIAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|380014980|ref|XP_003691490.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 728
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 9/153 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 108 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 167
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + S P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 168 VHINHQP----RLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 220
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q +L+ GV++ IATPGR + +++G L
Sbjct: 221 KGPQARDLERGVEICIATPGRLIDFLEKGTTNL 253
>gi|421168282|ref|ZP_15626379.1| ATP-dependent RNA helicase, partial [Pseudomonas aeruginosa ATCC
700888]
gi|404530723|gb|EKA40711.1| ATP-dependent RNA helicase, partial [Pseudomonas aeruginosa ATCC
700888]
Length = 171
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|349685730|ref|ZP_08896872.1| RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 446
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYATPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ ++ R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREK----GRAHPKGARALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+E L+ GVDVL+A PGR + L+ +G + L L
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGL 150
>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
Length = 488
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGRDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
Length = 488
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase [Brucella suis ATCC 23445]
gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
Length = 535
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQMQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 I-----IGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L+ GV++L+ATPGR + +++ + L +R
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRM 168
>gi|417700880|ref|ZP_12350014.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
Length = 406
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKG-----RRPVRALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++++L + P+ IQ A PP+++G + +G+GKT A+ LPV+ R
Sbjct: 18 FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHR 77
Query: 330 LRQEEL--QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFR 385
+R E +G +P V+L PT ELA+QV C ++ + G + R + V GG
Sbjct: 78 IRDGERGERGARAQRGAAPSAVVLVPTRELAAQV---CEAMRRYGRRLGVRVLPVYGGQS 134
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
QL L+EGVDV++ATPGR + + G L L LR
Sbjct: 135 MSRQLRALEEGVDVVVATPGRALDHLSRGSLDLSALRM 172
>gi|440227497|ref|YP_007334588.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
gi|440039008|gb|AGB72042.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
Length = 548
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L + NF P+ IQA A P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 4 FHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E + + + R +ILAPT EL +Q+ N R + ++VV G K Q
Sbjct: 64 LLKEA----KRPDNRTVRTLILAPTRELVNQIADNLRLFMRKTQLRINLVVGGASINKQQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
L+ L+ G D+L+ATPGR + LI L L
Sbjct: 120 LQ-LERGTDILVATPGRLLDLINRRALSL 147
>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
intermedium LMG 3301]
gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
intermedium LMG 3301]
Length = 470
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 24 FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 83
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 84 I-----IGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHA-HISTALVLGGVSKLS 137
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 138 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 172
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 12/148 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFM 408
GG Q E L+ GV++LIATPGR +
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLL 149
>gi|410995821|gb|AFV97286.1| hypothetical protein B649_04860 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 458
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 7/155 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++E+L + + P+ IQ P V+ G+ + A Q+G+GKT A+ LP+IQ
Sbjct: 2 SFTTLGLNAHLLETLIEKGYTEPTPIQTQVIPLVLRGRDVLGAAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +QG S R +++ PT ELASQV + S ++ G+ + + GG
Sbjct: 62 KLLT--VQG----KQSSARALVIVPTRELASQVCAAIESYAQ-GLELTCIALYGGANMAR 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q + L EGVD+++ATPGR + L K+G + L + +
Sbjct: 115 QAKELGEGVDIIVATPGRLIELNKQGHVPLSRIEY 149
>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
Length = 516
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E D E++++ N+ +P+ IQ A P ++ + + Q+GSGKT A+LLPV+
Sbjct: 78 SFLEADVEDCFKENVRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLS 137
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + ++G S S P+ +I+ PT EL SQ+ + R S + R +VV GG +
Sbjct: 138 TMLRNGIEGSSYSEVQEPQAIIVGPTRELVSQIFNEARKFSYNTI-VRPVVVYGGVQTSY 196
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
QL +++G +++ TPGR + I G + L +++
Sbjct: 197 QLREIEKGAHMIVGTPGRLLDFIGRGKISLKKVKF 231
>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 571
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL + +++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++QR
Sbjct: 3 FEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + ++ + R +I+ PT ELA+QV + R+ K + SMV+ GG Q
Sbjct: 63 LSTEP-RLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKY-LDLTSMVMFGGVGMGAQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+E L+ GVD+L+ATPGR + +G L L
Sbjct: 121 IEKLRRGVDILVATPGRLLDHASQGTLDL 149
>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126454229|ref|YP_001065030.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a]
gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403517400|ref|YP_006651533.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei BPC006]
gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106a]
gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403073043|gb|AFR14623.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
BPC006]
Length = 485
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L+ GV++L+ATPGR + +++ + L +R
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRM 168
>gi|383862185|ref|XP_003706564.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
[Megachile rotundata]
Length = 713
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 9/153 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 106 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 165
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + S P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 166 VHINNQP----RLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 218
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q +L+ GV++ IATPGR + +++G L
Sbjct: 219 KGPQARDLERGVEICIATPGRLIDFLEKGTTNL 251
>gi|53718338|ref|YP_107324.1| ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243]
gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|126450332|ref|YP_001081986.1| ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC 10247]
gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|386862863|ref|YP_006275812.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
gi|418392348|ref|ZP_12968130.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|418537531|ref|ZP_13103166.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|418541949|ref|ZP_13107410.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|418548277|ref|ZP_13113396.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|418554393|ref|ZP_13119180.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
K96243]
gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|385349447|gb|EIF56014.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|385356616|gb|EIF62709.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|385358294|gb|EIF64306.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|385370257|gb|EIF75512.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|385375424|gb|EIF80195.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|385659991|gb|AFI67414.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
Length = 485
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|392953714|ref|ZP_10319268.1| putative cold-shock DeaD box ATP-dependent RNA helicase
[Hydrocarboniphaga effusa AP103]
gi|391859229|gb|EIT69758.1| putative cold-shock DeaD box ATP-dependent RNA helicase
[Hydrocarboniphaga effusa AP103]
Length = 611
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++E+L R + PS IQA PP++EG+ + Q+G+GKT A+ LP++ +
Sbjct: 18 FADLQLAAPVLEALSRVGYESPSPIQARTIPPLLEGRDVLGQAQTGTGKTAAFALPILSK 77
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L +S SP+ +ILAPT ELA QV ++ + C F + + GG + Q
Sbjct: 78 L------DLKQS---SPQALILAPTRELAIQVAEALQTYAACMPGFHVLPIYGGQSYEPQ 128
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
L L+ G V++ TPGR + IK G L+L LR +
Sbjct: 129 LRGLKRGAHVVVGTPGRVVDHIKRGSLKLEGLRHF 163
>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
Length = 545
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 163 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 216
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 217 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 251
>gi|223998424|ref|XP_002288885.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975993|gb|EED94321.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 518
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 7/158 (4%)
Query: 253 KQRHKYSADG-DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
K++ K S D D +F L SD +L F R +QIQAM+ P ++ GK I A
Sbjct: 4 KKKRKSSVDASDEGQDNTFASLPLSDLTQNALSAMGFTRMTQIQAMSIPALLSGKDLIGA 63
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++GSGKTLA+LLPV++ L + S++ +G+ ++++PT ELA Q+ C+ L
Sbjct: 64 AKTGSGKTLAFLLPVVELLHNAKFG--SRNGTGA---IVISPTRELAMQIYGVCKDLCTS 118
Query: 372 GVPFRSM-VVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
G ++ ++ GG ++T+ E L +GV+++IATPGR +
Sbjct: 119 GKHHQTYGLIIGGANRRTEAERLAKGVNIVIATPGRLL 156
>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
Length = 457
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L + VD+++ATPGR M L++ G + L
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFARL 151
>gi|390168903|ref|ZP_10220852.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
gi|389588492|gb|EIM66538.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
Length = 445
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVSEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYH-KLNMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
QL+ L++GVDVLIATPGR M L + G + L
Sbjct: 115 QLKALEKGVDVLIATPGRLMDLFQRGKILL 144
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++ +L Q + P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 18 FEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L + S S SP R +IL PT ELA QV N ++ + P RS VV GG
Sbjct: 78 LLA------NASNSASPARHPVRALILTPTRELADQVAENVKAYCRH-TPLRSTVVFGGM 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ GV+++IATPGR + +++ L L
Sbjct: 131 DMAPQTAALRAGVEIVIATPGRLLDHVQQKTLNL 164
>gi|418254156|ref|ZP_12879053.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
gi|420370803|ref|ZP_14871309.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391319894|gb|EIQ76836.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|397900513|gb|EJL16872.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 6603-63]
Length = 406
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKG-----RRPVRALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L+ GV++L+ATPGR + +++ + L +R
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRM 168
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L+ GV++L+ATPGR + +++ + L +R
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRM 168
>gi|451970168|ref|ZP_21923395.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus E0666]
gi|451933682|gb|EMD81349.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus E0666]
Length = 402
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 85/141 (60%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + E++K + +P+ IQ A P V+ G + I A Q+G+GKT +++LP++++
Sbjct: 3 FSKLGLSASITEAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q E Q ++ R +IL PT ELA QV + + K +P RSM + GG Q
Sbjct: 63 LSQGETQRKKRA-----RAIILTPTRELALQVHQSIEAYGK-NLPLRSMAMFGGVDYAPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L EGVD++++TPGR + L
Sbjct: 117 KQALIEGVDIVVSTPGRLIDL 137
>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
gi|384542336|ref|YP_005726398.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|415854782|ref|ZP_11530368.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|417706409|ref|ZP_12355465.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|417721811|ref|ZP_12370653.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|417727186|ref|ZP_12375928.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|417732356|ref|ZP_12381025.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|417737649|ref|ZP_12386250.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|417742288|ref|ZP_12390838.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|420330111|ref|ZP_14831808.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|420340408|ref|ZP_14841932.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
gi|424837260|ref|ZP_18261897.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
2457T]
gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
2457T]
gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
4343-70]
gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
2747-71]
gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Shigella flexneri 2930-71]
gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
gi|383466312|gb|EID61333.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5a str. M90T]
gi|391258157|gb|EIQ17263.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-1770]
gi|391272965|gb|EIQ31794.1| ATP-dependent RNA helicase rhlE [Shigella flexneri K-404]
Length = 406
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKG-----RRPVRALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|393723703|ref|ZP_10343630.1| putative helicase [Sphingomonas sp. PAMC 26605]
Length = 552
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P ++ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRTLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L++GVDVLIATPGR M L G + L
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILL 144
>gi|349699158|ref|ZP_08900787.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 445
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYATPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ ++ R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREK----GRAHPKGARALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+E L+ GVDVL+A PGR + L+ +G + L L
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGL 150
>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 471
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L +I++L+++++L P+ IQ A P ++ G+ + Q+G+GKT A+ +P IQ
Sbjct: 3 FKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR+E+ S + R +I+ PT ELA Q+ + + K + VV GG QK Q
Sbjct: 63 LREEK---ESHGAKQNIRALIVTPTRELALQIYESFNTYGKF-TDLKCCVVFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
E L++ VD+L+ATPGR + LI + I+ + +++
Sbjct: 119 EEKLKQRVDILVATPGRLLALIDQKIVNIDHIK 151
>gi|260223291|emb|CBA33706.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 608
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+EG + Q+G+GKT A+ LP++
Sbjct: 22 NFEELKLAPAIVKAVREQGYETPTAIQAQAIPLVLEGHDLLGGAQTGTGKTAAFTLPLLH 81
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV + R K + S VV GG
Sbjct: 82 RLSMSR-SAQNKFGGTGIRALVLTPTRELAAQVEESVRQYGKY-LQLSSTVVFGGVGMNP 139
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ +++GVD+L+ATPGR + L ++G+L L
Sbjct: 140 QISKVKKGVDILVATPGRLLDLAQQGMLDL 169
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYGKY-TALRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L+ GV++L+ATPGR + +++ + L +R
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRM 168
>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
DSM 18315]
gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
DSM 18315]
Length = 419
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + + ++LK++ + P+ IQA A P V++G + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ ++ +S + ++L PT ELA Q+ + + C + V+ GG QK
Sbjct: 62 KIEEQ----ISSRCKPGIKALVLTPTRELAIQIGESFTAYG-CYTHVKHTVIFGGVGQKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q + L+ GVDVLIATPGR + L+ +G ++L L ++
Sbjct: 117 QTDALERGVDVLIATPGRLLDLLSQGFIRLDTLEYFV 153
>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase [Ferrimonas balearica DSM 9799]
gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
9799]
Length = 499
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S + ++ + + PS IQA A P ++ GK + A Q+G+GKT + LP++Q
Sbjct: 3 FASLGLSPELARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPMLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + +++ S R ++L PT ELA+QV + ++ + +P RS+VV GG Q
Sbjct: 63 LSRG-----TRARSNRVRALVLTPTRELAAQVAESVQTYGQ-NLPLRSVVVFGGVSINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L+ G DVL+ATPGR + L + ++ +L
Sbjct: 117 MQALRRGADVLVATPGRLLDLFSQNAVKFEDL 148
>gi|420099387|ref|ZP_14610620.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
gi|394423123|gb|EJE96397.1| ATP-dependent RNA helicase RhlE [Escherichia coli O111:H11 str.
CVM9455]
Length = 376
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 8/152 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKG-----RRPVRALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|423107485|ref|ZP_17095180.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
gi|376388510|gb|EHT01205.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5243]
Length = 454
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLIHKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNVRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q+ L+ GVD+L+ATPGR + L
Sbjct: 118 QMMKLRSGVDILVATPGRLLDL 139
>gi|334705092|ref|ZP_08520958.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 462
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGGRRQV----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
L+ ++ GVD+L+ATPGR + L+ +G L L
Sbjct: 117 NLDAIKLGVDILVATPGRLLDLLTQGALTL 146
>gi|238750395|ref|ZP_04611896.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
gi|238711326|gb|EEQ03543.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
Length = 438
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 80/145 (55%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +I++L+ + + RP+ IQA A PP ++G+ + + +G+GKT A+LLP +Q
Sbjct: 5 NFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKH-TQLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
Length = 599
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 89/153 (58%), Gaps = 9/153 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G S+ ++++L + + PS IQA AFP ++ G+ + Q+G+GKT A+ LP+++R
Sbjct: 45 FAGFGFSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 104
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+++ + P+ ++LAPT ELA QV + ++ S + + GG ++Q
Sbjct: 105 LQKD---------ATKPQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQ 155
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ L+ GVDV++ TPGR M +++G L LR
Sbjct: 156 IHALKRGVDVVVGTPGRVMDHMRQGTLDTTGLR 188
>gi|423343393|ref|ZP_17321106.1| hypothetical protein HMPREF1077_02536 [Parabacteroides johnsonii
CL02T12C29]
gi|409215468|gb|EKN08468.1| hypothetical protein HMPREF1077_02536 [Parabacteroides johnsonii
CL02T12C29]
Length = 425
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + + ++LK++ + P+ IQA A P V++G + Q+G+GKT A+ +P+IQ
Sbjct: 8 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQ 67
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ ++ +S + ++L PT ELA Q+ + + C + V+ GG QK
Sbjct: 68 KIEEQ----ISSRRKPGIKALVLTPTRELAIQIGESFTAYG-CYTHVKHTVIFGGVGQKP 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q + L+ GVDVLIATPGR + L+ +G ++L L ++
Sbjct: 123 QTDALERGVDVLIATPGRLLDLLSQGFIRLDTLEYFV 159
>gi|407792739|ref|ZP_11139775.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
gi|407216997|gb|EKE86833.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
Length = 393
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++++L RQ + P+ IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 TFSELGLCPNILDALARQGYTEPTPIQAQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L+ ++ + + RV+IL PT ELA+QV + + + VV GG +
Sbjct: 62 MLKDG-----PRAQANTARVLILTPTRELAAQVGESVATYG-ANLALNYAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVD+L+ATPGR + L ++ ++
Sbjct: 116 QMMKLRKGVDILVATPGRLLDLYQQNAIRF 145
>gi|416864075|ref|ZP_11915427.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|334835095|gb|EGM13996.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|453044054|gb|EME91780.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
PA21_ST175]
Length = 449
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVD+L+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQ 150
>gi|323310025|gb|EGA63220.1| Prp5p [Saccharomyces cerevisiae FostersO]
Length = 849
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 101/173 (58%), Gaps = 16/173 (9%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCS-DYMIESLKRQNFLRPSQIQAMA 298
S+ N++ + T CPK K+S +LG S D M+ ++ +F + IQ+ A
Sbjct: 239 SLDNIKIKGTGCPKPVTKWS------------QLGLSTDTMVLITEKLHFGSLTPIQSQA 286
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P ++ G+ I ++GSGKT++YLLP++++++ + + LSK +G P +ILAPT ELA
Sbjct: 287 LPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQ--RPLSKHETG-PMCLILAPTRELA 343
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI 411
Q+ ++ RS+ TGG K Q+ +L+ G ++++ATPGRF+ ++
Sbjct: 344 LQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDIL 396
>gi|302505192|ref|XP_003014817.1| hypothetical protein ARB_07378 [Arthroderma benhamiae CBS 112371]
gi|291178123|gb|EFE33914.1| hypothetical protein ARB_07378 [Arthroderma benhamiae CBS 112371]
Length = 595
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF++ G M+ ++K ++ P+ +QA P V+ G I Q+GSGKT A+L+PV+
Sbjct: 127 KSFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPVL 186
Query: 328 QRL----------RQEELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
+L R + G ++S P V+I+ PT ELA+Q+ R L
Sbjct: 187 SKLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLC----- 241
Query: 375 FRSM----VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRW 423
+RSM V+ GG + Q LQ+G D+LIATPGR + F+ K IL L +R+
Sbjct: 242 YRSMLRPCVIYGGGPSRDQRMELQKGCDILIATPGRLIDFMEKPNILSLCRVRY 295
>gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 441
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + RP+ IQA A PP +EG+ + + +G+GKT AYLLPV+Q
Sbjct: 5 NFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R+ + +TGG
Sbjct: 65 -----HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFA-AHTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
Length = 457
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L + VD+++ATPGR M L++ G + L
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFDRL 151
>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
Length = 607
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G S+ ++ +L+ + + PS IQ AFP ++ G+ + Q+G+GKT A+ LP+++R
Sbjct: 59 FAGFGFSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLER 118
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S PRV++LAPT ELA QV + ++ + + + GG ++Q
Sbjct: 119 L---------EGRSSKPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQ 169
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ L+ GVDV++ TPGR M +++G L LR
Sbjct: 170 IHTLKRGVDVVVGTPGRVMDHMRQGTLDTTGLR 202
>gi|388568067|ref|ZP_10154491.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenophaga
sp. PBC]
gi|388264699|gb|EIK90265.1| DEAD/DEAH box helicase domain-containing protein [Hydrogenophaga
sp. PBC]
Length = 588
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + +++++ + P+ IQ A P V+ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAIVQAVHEHGYHTPTPIQVEAVPAVLAGRDLLAGAQTGTGKTAAFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + + ++ R ++L PT ELA+QV + R K V S VV GG
Sbjct: 62 RLSQGQ-RPKNRFGGIGIRALVLTPTRELAAQVEESVRVYGKH-VDLSSTVVFGGVGMNP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q++ ++ GVD+L+ATPGR + L ++G L L N++
Sbjct: 120 QIDAMKRGVDILVATPGRLLDLQQQGFLDLSNVQ 153
>gi|349609420|ref|ZP_08888815.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
gi|348611981|gb|EGY61609.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
Length = 457
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L + VD+++ATPGR M L++ G + L
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFARL 151
>gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
Length = 503
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 89 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 148
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 149 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 203 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 237
>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
Length = 549
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 163 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 216
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 217 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 251
>gi|402565565|ref|YP_006614910.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402246762|gb|AFQ47216.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 489
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK + RS V+ GG
Sbjct: 62 RLHTFYAEHRGAKRAI----RALILTPTRELAAQVEESVRAYSKY-LKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q++ L+ GVD+++ATPGR + +++ + L NL
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNL 151
>gi|403059557|ref|YP_006647774.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402806883|gb|AFR04521.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 441
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++L+ + RP+ IQA A PP +EG+ + + +G+GKT AYLLPV+Q
Sbjct: 5 NFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R+ + +TGG
Sbjct: 65 -----HLIDFPRKKSGPPRILILTPTRELAMQVADQARAFA-AHTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKE 143
>gi|416959610|ref|ZP_11936167.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
Length = 480
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +L+ N+ P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIGPLLRNLQDLNYQTPTPVQAKAIPAVLGGQDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +Q
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQF 146
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++ R
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 80 LM--PLANTSASPARHPVRALILTPTRELADQVYESVKRYSK-QTPLRSAVVFGGVDIGP 136
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q E L+ G +VL+ATPGR +
Sbjct: 137 QKEALRRGCEVLVATPGRLL 156
>gi|254911116|ref|NP_001157180.1| Vasa4 protein [Acyrthosiphon pisum]
Length = 547
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 268 KSFKELG-CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+SF L D ++E++K N+++P+ IQ + P ++ GK + Q+GSGKT+AY+LP+
Sbjct: 130 ESFDTLNNIPDRLMENIKMCNYVKPTPIQKYSIPIILSGKDLMATAQTGSGKTVAYVLPI 189
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
IQ+L + + P+VVI+APT ELA Q+ L++ G S V GG
Sbjct: 190 IQKLLMDPQILVKDRNHSEPQVVIMAPTRELAVQIKMVVLKLAR-GTGISSFVCYGGTLV 248
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q + +G +L+ATPGR ++ G + ++R++
Sbjct: 249 SHQKNQILKGCHILVATPGRLNEFVQHGFITFSSVRFFV 287
>gi|427407716|ref|ZP_18897918.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
gi|425713679|gb|EKU76691.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
Length = 463
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L++GVDVLIATPGR M L + G + L
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILL 144
>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 642
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + +++++ + PS IQA A PP++EG+ + Q+G+GKT A+ LP++
Sbjct: 9 SFSELGLAAPILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTGAFALPILS 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL T +V+ILAPT ELA QV C+S ++ F + + GG +
Sbjct: 69 RL---------NLTQMDTQVLILAPTRELAIQVAEACQSYAQFIPDFHVLPIYGGSSYDS 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL L+ G V++ TPGR M +++ G L L L+
Sbjct: 120 QLRALRRGAQVVVGTPGRVMDMMRRGKLDLSALK 153
>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
Length = 485
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior]
Length = 795
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF + G ++E++K+ + +P+ +Q A P ++ G+ + Q+GSGKT A+++P++
Sbjct: 286 QSFDQSGLRTILLENIKKSGYTKPTPVQKYAIPIIMNGQDLMACAQTGSGKTAAFVVPIL 345
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ + STS P V+I++PT EL SQ+ + S G R+ + GG
Sbjct: 346 HTLLEDPKDLIKTSTSCEPHVIIISPTRELTSQIHQQVKKFS-LGSIIRAELAYGGTSVM 404
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q + G +L+ATPGR + I G ++L +LR+
Sbjct: 405 HQSNRVLNGCHILVATPGRLLDFIGRGKIRLSSLRF 440
>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase [Streptobacillus moniliformis DSM 12112]
gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
DSM 12112]
Length = 543
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 98/158 (62%), Gaps = 12/158 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FK+ S+ M+E+L+++ F+ PS+IQA+ P +++ ++ ++ Q+G+GKT A+ +P++
Sbjct: 2 NFKDYNLSNEMLEALEKKRFVSPSEIQALVIPELLKEETHLIGQAQTGTGKTAAFSIPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ + + +ILAPT ELA+QV SL K + + V GG +
Sbjct: 62 EKI----------IPTKKVKALILAPTRELANQVSDEIYSL-KGKKEVKILAVYGGASIE 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q++NL++GVD+++ TPGR + +I +G L+L L ++
Sbjct: 111 NQIKNLKKGVDIVVGTPGRVIDMINKGALKLNELEYFV 148
>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 538
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF E G +I + + + +P+ IQ P ++ G+ + Q+GSGKT A+L+P
Sbjct: 129 SINSFNEAGLCSTLINLINKCQYHKPTPIQKHCIPIIMSGRDLMGCAQTGSGKTAAFLIP 188
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+I +L E+ Q +SKS+ +P V+I+ PT EL Q+ R S+ G + + GG
Sbjct: 189 IINKLL-EKNQIMSKSSFCTPEVIIMTPTRELTIQIFEEARKFSR-GTFLKVALTYGGTA 246
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+E ++ G ++L+ATPGR + ++ GI+
Sbjct: 247 VFHQVEKIKNGCNILVATPGRLLDFVQRGIIDF 279
>gi|163854396|ref|YP_001628694.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258124|emb|CAP40423.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 321
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +D ++ ++ + P+ IQA A P V++G + A Q+G+GKT + LP++
Sbjct: 6 SFADLGLADPLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q++ L K G PR +IL PT EL +QV + R+ K P SMV+ GG
Sbjct: 66 LLMQQK-PALKK--PGRPRCLILTPTRELTAQVAESVRTYGK-HTPLTSMVMFGGVNINP 121
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q+ L++ +D+L+ATPGR +
Sbjct: 122 QISALKKPLDILVATPGRLL 141
>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
Length = 724
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 26/229 (11%)
Query: 209 SIDKNISDYNSRSNKHEKSGTKIDR--GWRSGG--SIHNLQYEP-----TDCPKQRHKYS 259
S +N DY ++ H K+ + + W SI Y P P + +KY
Sbjct: 32 SQQQNQKDYGTKKQNHRKTPGDLLKKPNWDLAALPSIKKNLYAPHINVLNRTPDEINKYH 91
Query: 260 ADGDFFSR--------KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
A + + ++F+E DY++E +++Q F P+ IQA +P + G+ +
Sbjct: 92 AGKEITVKGNNTPSPIQAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGI 151
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--S 369
Q+GSGKTLAY+LP + + S P V+ILAPT ELA Q+ + R S
Sbjct: 152 AQTGSGKTLAYILPATVHINHQP----RLSRGDGPIVLILAPTRELAQQIQTVARDFGSS 207
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
C R+ + GG + Q +L+ GV++ IATPGR + +++G L
Sbjct: 208 SC---IRNTCIFGGSPKGPQARDLERGVEICIATPGRLIDFLEKGTTNL 253
>gi|348030348|ref|YP_004873034.1| DEAD/DEAH box helicase [Glaciecola nitratireducens FR1064]
gi|347947691|gb|AEP31041.1| DEAD box helicase [Glaciecola nitratireducens FR1064]
Length = 421
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S ++++++ + + +PS IQ P V+EGK + A Q+G+GKT A+ LP++
Sbjct: 2 SFKSLGLSSLVLQAVEEKGYKQPSPIQEQGIPVVLEGKDIMAAAQTGTGKTAAFTLPILS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ +++ + + +IL PT ELA+Q+ N R K + ++ VV GG
Sbjct: 62 M-----FENTKPASANNVKALILTPTRELAAQIDENIRYYGKH-LNLKTQVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L+ GVDVL+ATPGR M L ++ ++ L
Sbjct: 116 QMIKLRRGVDVLVATPGRLMDLYQQKAVKFSEL 148
>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
Length = 496
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF D +I ++KR + P+ IQA A P V+EG + Q+G+GKT A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + SPR +ILAPT ELA Q+ + + G R+ V+ GG
Sbjct: 62 RLI------TNPARTRSPRTLILAPTRELAEQIFRSTLDFMR-GTRLRATVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVDV++A PGR + + +G ++ L
Sbjct: 115 QVRALRQGVDVIVACPGRLLDHLNQGNVRFDGL 147
>gi|393763310|ref|ZP_10351931.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392605650|gb|EIW88540.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 416
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + +++++ + + PS IQ A P V+ G+ + A Q+G+GKT + LP++QR
Sbjct: 3 FTDLPLAAELLKAVAEKGYTTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L QG K S R +IL PT ELA+QV + + K +P RS +V GG + Q
Sbjct: 63 LNDSREQG-RKVQSNQVRALILTPTRELAAQVAESVQLYGKH-LPLRSTLVFGGVKINPQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKE 413
+ L++GVD+LIATPGR + L ++
Sbjct: 121 MMALRKGVDILIATPGRLLDLYQQ 144
>gi|407697074|ref|YP_006821862.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407254412|gb|AFT71519.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 454
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D ++ ++ Q + RPS IQA A P V+ G + A Q+G+GKT + LP++QR
Sbjct: 3 FASLGLIDPLLRAVAEQGYDRPSPIQAQAIPAVLGGSDVMAAAQTGTGKTAGFTLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + S R ++L PT ELA+QV + K RS VV GG Q
Sbjct: 63 LEPGK-----PAASRQVRALVLTPTRELAAQVGESVAEYGKYLPALRSAVVFGGVNINPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
+ L+ GVDVL+ATPGR + L ++ + L
Sbjct: 118 INRLRGGVDVLVATPGRLLDLYQQKAMSFDQL 149
>gi|444308511|ref|ZP_21144156.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
gi|443488094|gb|ELT50851.1| DEAD/DEAH box helicase [Ochrobactrum intermedium M86]
Length = 463
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 17 FAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQK 76
Query: 330 LRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 77 I-----IGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHA-HISTALVLGGVSKLS 130
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 131 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 165
>gi|408372746|ref|ZP_11170445.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407767098|gb|EKF75536.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 550
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 9/157 (5%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR F LG + ++ ++ RQ F +PS IQA A P ++EG + Q+G+GKT A+ LP
Sbjct: 4 SRTGFATLGLPEALLTAIARQGFEQPSPIQAQAIPLLLEGHDLLGQAQTGTGKTAAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL + P+++ILAPT ELA QV C + + + + GG
Sbjct: 64 LLARL---------DVSLRQPQMLILAPTRELAIQVAKACEEFAANMPGLQVLPIYGGGE 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+TQL+ L+ G V++ TPGR M ++ G L+L L+
Sbjct: 115 YRTQLKGLRAGAQVIVGTPGRVMDHMERGALKLDQLK 151
>gi|420155719|ref|ZP_14662575.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
gi|394758696|gb|EJF41558.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
Length = 595
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 92/156 (58%), Gaps = 3/156 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL ++++L+ + + PS IQ A PP + G+ + Q+G+GKT A+ +P++Q
Sbjct: 2 NFQELNLIAPILKALQEEQYEAPSPIQEKAIPPALLGRDVLGCAQTGTGKTAAFAVPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K + R +IL PT ELA Q+ + R+ + +P RS V+ GG Q
Sbjct: 62 TLNAQP--PVPKGQKRAIRSLILTPTRELAIQIGESLRAYGRY-LPLRSEVIFGGVSQVP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q+ +L GVD+L+ATPGR LI++G + L ++ +
Sbjct: 119 QVNSLNRGVDILVATPGRLNDLIQQGFIDLGAVQIF 154
>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
Length = 472
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP++
Sbjct: 3 FTSLGLSVPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPIL-- 60
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E L + + R +IL PT ELA+QV + + S+ +P S VV GG + Q
Sbjct: 61 ---ELLSNGPRVRANHVRALILTPTRELAAQVQESVFTYSQH-LPLNSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ L++G DVL+ATPGR M L + ++ L
Sbjct: 117 MQRLRKGADVLVATPGRLMDLYSQNAVKFDQL 148
>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
gi|423072846|ref|ZP_17061595.1| putative ATP-dependent RNA helicase RhlE [Desulfitobacterium
hafniense DP7]
gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361856461|gb|EHL08364.1| putative ATP-dependent RNA helicase RhlE [Desulfitobacterium
hafniense DP7]
Length = 478
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 9/186 (4%)
Query: 243 NLQYEPTDCPKQRHKY-SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP 301
N Y T C K+ + + G + EL + + ++L Q + + IQA A P
Sbjct: 28 NFLYNDTKCKKKTTNFINIKGLKVKQVLLNELKIINPIQKALAAQGYSEATPIQAEAIPH 87
Query: 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361
++EG + Q+G+GKT A+ +P++Q L QGL K R ++LAPT ELA+Q+
Sbjct: 88 LLEGLDLLGCAQTGTGKTAAFAIPILQSLAMG--QGLLKGKR-QIRALVLAPTRELATQI 144
Query: 362 LSNCRSLSKCGV--PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI 419
S + GV P R++V+ GG Q Q L++G+D+L+ATPGR + LI +G + L
Sbjct: 145 ---AESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPGRLLDLINQGFIDLS 201
Query: 420 NLRWYA 425
++ +
Sbjct: 202 HVEHFV 207
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 12/160 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 2 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N K RS VV GG
Sbjct: 62 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYGKY-TALRSAVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L+ GV++L+ATPGR + +++ + L +R
Sbjct: 115 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRM 154
>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 448
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++ ++ + P+ IQA A P V+ G + Q+G+GKT + LP++
Sbjct: 2 SFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL S S R ++L PT ELA+QV + R+ K + S V+ GG
Sbjct: 62 RLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKY-LNLNSAVIFGGVGINP 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L+ GVD+L+ATPGR + +++G + L
Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNL 150
>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
AND4]
gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
AND4]
Length = 416
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++++L N + P+ +Q + P ++EGK + A Q+G+GKT A+ LP+IQ
Sbjct: 4 NFADLGIAQQLVDTLSGMNIVTPTPVQEKSIPHILEGKDLLAAAQTGTGKTAAFGLPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++Q + G+P+ +IL PT ELA QV+ N S + V GG
Sbjct: 64 SVQQNK-------RDGAPKALILVPTRELAQQVMDNLIQYS-ANTNLNIVCVYGGTSIGV 115
Query: 389 QLENLQEGVDVLIATPGRFM--------FLIKEGILQL 418
Q + L+EG D+LIATPGR + + K GIL L
Sbjct: 116 QKKKLEEGADILIATPGRLLDHLFNGNVIIAKTGILVL 153
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 18/165 (10%)
Query: 249 TDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308
+D P++ + +D K F++ G S ++++L ++ P+ IQ A P V+EGK
Sbjct: 2 SDIPQKTTQTGSD------KKFEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDV 55
Query: 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLS 363
+ A Q+G+GKT Y LP++Q L S +TS SP R +IL PT ELA QV
Sbjct: 56 MGAAQTGTGKTAGYSLPMLQSLL------FSANTSMSPARHPVRALILVPTRELADQVFE 109
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
+ + +K P +S VV GG +Q L+ GV++LIATPGR +
Sbjct: 110 DVKRYAKY-TPVKSAVVFGGVDISSQTSILRAGVEILIATPGRLL 153
>gi|334142403|ref|YP_004535611.1| DEAD/DEAH box helicase [Novosphingobium sp. PP1Y]
gi|359401233|ref|ZP_09194203.1| DEAD/DEAH box helicase-like protein [Novosphingobium
pentaromativorans US6-1]
gi|333940435|emb|CCA93793.1| DEAD/DEAH box helicase-like [Novosphingobium sp. PP1Y]
gi|357597304|gb|EHJ59052.1| DEAD/DEAH box helicase-like protein [Novosphingobium
pentaromativorans US6-1]
Length = 462
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S+ ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 NFADLGLSEELLQAVEAAGYTEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 62 ILAHGRRRAL------MPRSLILEPTRELAAQVAENFEKYGKNH-DLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L EGVDVLIATPGR M L + G + L
Sbjct: 115 QVKALTEGVDVLIATPGRLMDLFERGKILL 144
>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
Length = 454
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITQQPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|91783626|ref|YP_558832.1| ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans LB400]
gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
LB400]
Length = 523
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +Q A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 44 SFALLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLLQ 103
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 104 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIDYGK-GLDLRFLAAYGGVSINP 158
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVDVL+ATPGR + L ++ +QL
Sbjct: 159 QMMKLRKGVDVLVATPGRLLDLNRQNAVQL 188
>gi|423345822|ref|ZP_17323511.1| hypothetical protein HMPREF1060_01183 [Parabacteroides merdae
CL03T12C32]
gi|409221557|gb|EKN14506.1| hypothetical protein HMPREF1060_01183 [Parabacteroides merdae
CL03T12C32]
Length = 426
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + + ++LK++ + P+ IQA A P V++G + Q+G+GKT A+ +P+IQ
Sbjct: 9 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQ 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + +S+ + +IL PT ELA Q+ + + + + V+ GG QK
Sbjct: 69 KIEER----ISRGRKPGIKALILTPTRELAIQIGESFTAYGRY-THVKHTVIFGGVGQKP 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q + L+ GVDVLIATPGR + LI +G ++L L ++
Sbjct: 124 QTDALERGVDVLIATPGRLLDLINQGFIRLDTLEYFV 160
>gi|359443658|ref|ZP_09233492.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
gi|358034494|dbj|GAA69741.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|359435528|ref|ZP_09225727.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
gi|357917829|dbj|GAA61976.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|359456093|ref|ZP_09245284.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
gi|358046842|dbj|GAA81533.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|109071704|ref|XP_001112413.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Macaca
mulatta]
gi|355561838|gb|EHH18470.1| hypothetical protein EGK_15075 [Macaca mulatta]
Length = 648
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 5/149 (3%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C ++E++K+ F +P+ IQ+ A+P V++G I Q+G+GKTL YL+P L +
Sbjct: 249 CYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---D 305
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
LQ K P +++L PT ELA QV C S G+ RS+ V GG + Q+E L+
Sbjct: 306 LQPTLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGL--RSVCVYGGGNRDEQIEELR 363
Query: 395 EGVDVLIATPGRFMFLIKEGILQLINLRW 423
+GVD++IATPGR L + L N+ +
Sbjct: 364 KGVDIIIATPGRLNDLQMNNFVNLKNITY 392
>gi|448746637|ref|ZP_21728302.1| DEAD-like helicase [Halomonas titanicae BH1]
gi|445565565|gb|ELY21674.1| DEAD-like helicase [Halomonas titanicae BH1]
Length = 418
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 10/152 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
RL + + T R ++L PT ELA+QV S+S G + RS ++ GG Q
Sbjct: 62 RLNTGK-----RPTKRQVRALVLTPTRELAAQV---GESVSTYGQHLALRSHIIFGGVGQ 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q++ L+ G+DVL+ATPGR + L ++G + L
Sbjct: 114 QPQIDALKAGLDVLVATPGRLLDLHQQGHVDL 145
>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
Length = 644
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 1/155 (0%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKE + + ++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 209 TFKEACLCESLERNVAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQ 268
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + S S P +I+APT EL +Q+ R + G R +V+ GG
Sbjct: 269 KLMADGVAASSFSEQQEPEAIIVAPTRELINQIFLEARKFAH-GTCVRPVVLYGGISTGH 327
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +L G +VL TPGR M +I G + L LR+
Sbjct: 328 QIRDLLRGCNVLCGTPGRLMDMIGRGKVGLTKLRY 362
>gi|152964826|ref|YP_001360610.1| DEAD/DEAH box helicase [Kineococcus radiotolerans SRS30216]
gi|151359343|gb|ABS02346.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 590
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ +L+R+ P IQ+ P + G+ + ++GSGKTL + LP++
Sbjct: 147 TFAELGLPEELVAALERRGMTAPFAIQSRTLPDGIAGRDILGRARTGSGKTLGFGLPMLA 206
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q++ +G+PR ++L PT ELA QV R L + R VV GG
Sbjct: 207 RLAQQK----RPRITGAPRGLVLVPTRELAMQVADALRPLGDS-LDLRLSVVVGGVPYGR 261
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ LQ G+DVLIATPGR + LI + L +
Sbjct: 262 QIAALQRGIDVLIATPGRLVDLIDRDAVSLAEV 294
>gi|392536161|ref|ZP_10283298.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 464
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 81/142 (57%), Gaps = 4/142 (2%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++
Sbjct: 17 RTFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPIL 76
Query: 328 QRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL L S S + P R +IL PT ELA QV + + S P RS VV GG
Sbjct: 77 HRLM--PLANTSASPARHPVRALILTPTRELADQVYESVKRYS-LHTPLRSAVVFGGVDI 133
Query: 387 KTQLENLQEGVDVLIATPGRFM 408
Q E L+ G +VL+ATPGR +
Sbjct: 134 GPQKEALRRGCEVLVATPGRLL 155
>gi|344923278|ref|ZP_08776739.1| superfamily II DNA/RNA helicase [Candidatus Odyssella
thessalonicensis L13]
Length = 413
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 7/154 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E+G + + E++ + + P+ IQ A P ++GK + Q+G+GKT A+LLP I+
Sbjct: 2 SFSEIGLTSELAETVAKLGYDCPTPIQNTAIPLALQGKDILACAQTGTGKTAAFLLPTIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ S+S P VILAPT ELA+QV N S + G +++ V GG
Sbjct: 62 IIKH------SRSRHRLPSAVILAPTRELATQVYDNFLSYT-AGTNLKAISVVGGEIISI 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q L++GVD+LIATPGR + L + G L L N++
Sbjct: 115 QERILKKGVDILIATPGRLIDLFERGKLILTNVK 148
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 87 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 146
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 147 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGG 199
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q E L+ GV++L+ATPGR + +++ + L +R
Sbjct: 200 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRM 239
>gi|209881955|ref|XP_002142415.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium muris
RN66]
gi|209558021|gb|EEA08066.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Cryptosporidium
muris RN66]
Length = 506
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 6/147 (4%)
Query: 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
DFFS SF++ D + +LK N ++IQA + P ++EGK + ++GSGKTLA
Sbjct: 7 ADFFSNVSFEQSAICDQLKRALKDMNITTMTEIQAKSIPRILEGKDVLGTAKTGSGKTLA 66
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
+L+P + L E L ++ +G V++++PT EL+ Q+ CR L K +P +V
Sbjct: 67 FLVPAVNLLYNVEF--LPRNGTG---VIVISPTRELSLQIYEVCRELCKY-LPQTHGLVI 120
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFM 408
GG ++ + + L +GV++LIATPGR +
Sbjct: 121 GGANRRNEADKLNKGVNILIATPGRLL 147
>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 530
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 7/149 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++++ + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 4 FADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILST 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K + +PRV++++PT ELA Q+ C +S+ F + V GG Q
Sbjct: 64 LPR------VKGRNRAPRVLVVSPTRELAQQIARTCMQISRQTRHF-TTTVFGGTPYGPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ L+ G DVLIATPGR L+K G++ L
Sbjct: 117 IKELRGGTDVLIATPGRLKDLMKRGVVNL 145
>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
proteobacterium HTCC2148]
Length = 618
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 9/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S+ + ++L + PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 9 SFAELALSEPLQKALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALPILA 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +++S P+V++LAPT ELA QV + ++ F + + GG +
Sbjct: 69 QL---------QASSKKPQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGADYRG 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
QL LQ GV V++ TPGR M ++ G L L LR
Sbjct: 120 QLRQLQRGVQVVVGTPGRVMDHMRRGSLDLSALR 153
>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
B7210]
Length = 427
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|414071784|ref|ZP_11407745.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
gi|410805784|gb|EKS11789.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 6/142 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFL 410
Q++ L++GVD+L+ATPGR + L
Sbjct: 116 QMQRLRKGVDILVATPGRLIDL 137
>gi|423722013|ref|ZP_17696189.1| hypothetical protein HMPREF1078_00252 [Parabacteroides merdae
CL09T00C40]
gi|409242715|gb|EKN35475.1| hypothetical protein HMPREF1078_00252 [Parabacteroides merdae
CL09T00C40]
Length = 426
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + + ++LK++ + P+ IQA A P V++G + Q+G+GKT A+ +P+IQ
Sbjct: 9 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQ 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + +S+ + +IL PT ELA Q+ + + + + V+ GG QK
Sbjct: 69 KIEER----ISRGRKPGIKALILTPTRELAIQIGESFTAYGRY-THVKHTVIFGGVGQKP 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q + L+ GVDVLIATPGR + LI +G ++L L ++
Sbjct: 124 QTDALERGVDVLIATPGRLLDLINQGFIRLDTLEYFV 160
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 12/154 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G S ++ +L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 30 FADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 89
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L +TS SP R +IL PT ELA QV N ++ + P RS VV GG
Sbjct: 90 LLAH------ANTSASPARHPVRALILTPTRELADQVAENVKAYCRH-TPLRSTVVFGGV 142
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q L+ G++++IATPGR + +++ L L
Sbjct: 143 DIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNL 176
>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
43184]
gi|154087752|gb|EDN86797.1| DEAD/DEAH box helicase [Parabacteroides merdae ATCC 43184]
Length = 419
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + + ++LK++ + P+ IQA A P V++G + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + +S+ + +IL PT ELA Q+ + + + + V+ GG QK
Sbjct: 62 KIEER----ISRGRKPGIKALILTPTRELAIQIGESFTAYGRY-THVKHTVIFGGVGQKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q + L+ GVDVLIATPGR + LI +G ++L L ++
Sbjct: 117 QTDALERGVDVLIATPGRLLDLINQGFIRLDTLEYFV 153
>gi|424047087|ref|ZP_17784648.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HENC-03]
gi|408884385|gb|EKM23129.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HENC-03]
Length = 411
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 86/141 (60%), Gaps = 6/141 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + +++K + +P+ IQ A P V+ G + I A Q+G+GKT +++LP++++
Sbjct: 3 FSKLGLSAPITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q E Q ++ R +IL PT ELA QV + + SK +P RSM + GG Q
Sbjct: 63 LSQGETQRKKRA-----RAIILTPTRELALQVHQSIEAYSK-NLPLRSMAMFGGVDYAPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFL 410
+ L EGVD++++TPGR + L
Sbjct: 117 KQALIEGVDIVVSTPGRLIDL 137
>gi|339481611|ref|YP_004693397.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338803756|gb|AEI99997.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 445
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 6/152 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G SD +I ++ + + P+ IQ A P V+ G + Q+G+GKT + LP++
Sbjct: 2 SFSTFGLSDEIIRAVTERGYTVPTPIQTQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILH 61
Query: 329 RLRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL + ++G S SG P R +IL PT ELA+QV + R K + SM++ GG
Sbjct: 62 RLSDKSIKGPS---SGRPPIRALILVPTRELAAQVEESVRDYGKY-LKLSSMIMIGGVNI 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ VD+L+ATPGR + +++ L L
Sbjct: 118 NPQITRLKSRVDILVATPGRLLDHVQQKTLSL 149
>gi|381201506|ref|ZP_09908631.1| DEAD/DEAH box helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 463
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q++ L++GVDVLIATPGR M L + G + L
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILL 144
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 83/145 (57%), Gaps = 12/145 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G + +++++ Q + +P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 43 SFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQ 102
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 103 RLLP------LASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 155
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM 408
Q L+ GV++LIATPGR +
Sbjct: 156 VDMNPQTAELRRGVEILIATPGRLL 180
>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 402
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 91/149 (61%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P +++G + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + + KS R+++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDQFKKRAMPKSC----RILVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
++ + GVDVL+ATPGR + LI +G ++L
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIDQGAIRL 148
>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
Length = 744
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 31/214 (14%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPK------------------------QRHKYSADGDFFS 266
DR ++G ++ N+++EP D +H+ + G
Sbjct: 55 FDRQSQNGKNLRNIKWEPQDLTPFEKNFYQPSATLVGLSETEIEGYLNKHQITLKGREVP 114
Query: 267 RKS--FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
R S F++ G Y++E LKRQ F +P+ IQA P + G+ + Q+GSGKTLAY++
Sbjct: 115 RPSMDFEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVV 174
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P + ++ +E S P +ILAPT ELA Q+ V + V GG
Sbjct: 175 PSLVHIQHQE----SIRRGDGPIALILAPTRELAQQIQQVATDFGSR-VSANNTCVFGGA 229
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q+ +L+ G +++IATPGR + ++ GI L
Sbjct: 230 PKGPQIRDLERGAEIVIATPGRLIDFLERGITNL 263
>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
Length = 517
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 7/155 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++ ++ P IQ A P +EG+ + Q+GSGKT A+ LP++Q+
Sbjct: 103 FAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQK 162
Query: 330 LRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ GL K + R +ILAPT ELA Q+ R++SK + +V GG + +
Sbjct: 163 -----IIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSA-HISTALVLGGVSKLS 216
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q++ + G+DVLIATPGR L+++G++ L RW
Sbjct: 217 QIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRW 251
>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
MS024-2A]
gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
MS024-2A]
Length = 415
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 93/155 (60%), Gaps = 4/155 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L ++++L++Q + +P+ IQ A P +++G + Q+G+GKT A+ +P++
Sbjct: 2 TFKDLKLELPILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPILN 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +E G K + +++ PT ELA Q+ N S+ R+ V+ GG +Q
Sbjct: 62 HLLKENNSGQGKR---KIKALVVTPTRELAIQIAENFTDYSQF-THLRNTVIFGGVKQSK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q+ +LQ+GVD+L+ATPGR + L+ +G + +L++
Sbjct: 118 QVASLQQGVDILVATPGRLLDLMNQGYITFRDLKY 152
>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660243|sp|Q6CIV2.1|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
Length = 554
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 9/153 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF E G Y+++ +K++ F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFR 385
+ + L S P V++LAPT ELA Q+ C SK G R+ V GG
Sbjct: 173 VHINAQPLL----SPGDGPIVLVLAPTRELAVQIQKEC---SKFGASSRIRNTCVYGGVP 225
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ Q+ +LQ GV++LIATPGR + +++ G L
Sbjct: 226 KSQQIRDLQRGVEILIATPGRLIDMLEIGKTNL 258
>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
NCTC 13177]
Length = 430
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|410094143|ref|ZP_11290596.1| ATP-dependent RNA helicase rhlE [Pseudomonas viridiflava UASWS0038]
gi|409758453|gb|EKN43752.1| ATP-dependent RNA helicase rhlE [Pseudomonas viridiflava UASWS0038]
Length = 442
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ +L + P+ +QA A PPV+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIEPLLRALDALGYQTPTPVQAQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E K + R ++LAPT ELA QV + R ++ +P + V GG
Sbjct: 62 RLTMEG----PKVAPNTIRALVLAPTRELAEQVHESIRQYAEH-LPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++GVDVL+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLHRQNAVKFSQLQ 150
>gi|410641166|ref|ZP_11351689.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
gi|410139293|dbj|GAC09876.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
Length = 436
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + PS IQA A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
EL K G+ R ++L PT ELA+QV ++ K +P RS VV GG
Sbjct: 61 -----ELLNRGKHARGNQARALVLTPTRELAAQVGASVVDYGK-DLPLRSAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + ++ +L
Sbjct: 115 PQMIKLRKGVDILVATPGRLLDLYNQNAVRFDDL 148
>gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
Length = 422
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L + P+ IQ A P V++G+ + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R + Q + S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIDQPWQ--REENSKEIRALVLVPTRELAQQVLDSLQAYAK-GTDLKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFM 408
QL +L+ GVD+LIATPGR +
Sbjct: 124 QLNHLRGGVDILIATPGRLL 143
>gi|365848675|ref|ZP_09389147.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
gi|364570255|gb|EHM47873.1| ATP-dependent RNA helicase RhlE [Yokenella regensburgei ATCC 43003]
Length = 450
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDTLGLNPEILRAVAEQGYREPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLISREPHAKGRRPI---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + L+L
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNALKL 147
>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase [Rhizobium etli CFN 42]
gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
Length = 560
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
++ +F+ LG S ++ +L + P+ IQ A P ++EG+ I Q+G+GKT A+ L
Sbjct: 20 YTLTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGL 79
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+I++L +E + +++T R +ILAPT EL +Q+ N + + P R VV GG
Sbjct: 80 PLIEKLLADERRPDNRTT----RTLILAPTRELVNQIAENLKKFIRKS-PLRINVVVGGV 134
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
Q L++G D+L+ATPGR + L+ + L +R+
Sbjct: 135 SINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRY 173
>gi|407067967|ref|ZP_11098805.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 538
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 92/161 (57%), Gaps = 22/161 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++++++ Q + +PS IQ A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 ------RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVV 380
R+RQ ++ R ++L PT ELA+QV S+ K G+ P S VV
Sbjct: 62 MLSKGPRVRQNQV-----------RALVLTPTRELAAQVNG---SVVKYGINLPLTSTVV 107
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
GG + Q++ L++G DVL+ATPGR + L + ++ L
Sbjct: 108 FGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQL 148
>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 389
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 5/149 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ +L ++ + P+ IQA A P V+ G+ + Q+G+GKT A+ LPV+
Sbjct: 4 FAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLHH 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + G R +IL+PT ELASQ+ N R+ + + S V+ GG + Q
Sbjct: 64 LADRK----APAPRGGCRALILSPTRELASQIHDNIRAYGRF-LGLSSAVIFGGVGARPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+E L+ GVDVL+ATPGR ++ G +L
Sbjct: 119 VEALRRGVDVLVATPGRLQDHVQTGAAKL 147
>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
112]
Length = 419
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 402
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HTFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSAVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
14]
gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
9]
Length = 414
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S +F +LG +D ++ ++ + P+ IQA A P V++G + A Q+G+GKT + L
Sbjct: 1 MSDLTFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++Q L +G PR ++L PT ELA+QV + R+ SK +P +S+V+ GG
Sbjct: 61 PLLQLLMCS-----PSHHAGRPRALVLTPTRELAAQVEESVRTYSKY-LPLKSLVMFGGV 114
Query: 385 RQKTQLENLQEGVDVLIATPGRFM 408
Q++ L+ VD+L+ATPGR +
Sbjct: 115 NINPQIKALRAPVDILVATPGRLL 138
>gi|419797020|ref|ZP_14322524.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
gi|385698868|gb|EIG29205.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
Length = 457
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEG 414
L + VD+++ATPGR M L++ G
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSG 144
>gi|407782464|ref|ZP_11129676.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407205829|gb|EKE75795.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 515
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 91/155 (58%), Gaps = 3/155 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S +++++ + + P+ IQA A PPV+ G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FTDLGLSAPILKAVTAEGYETPTPIQAQAIPPVLTGRDLMGIAQTGTGKTAAFALPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E K+ GS RV+IL+PT ELASQ+ + R K + V GG Q
Sbjct: 64 LTEEGNH--IKTPRGSCRVLILSPTRELASQIAESFRVYGKF-LNLSVATVFGGVSAGPQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
+ LQ GVD+++ATPGR + ++ +++L + +
Sbjct: 121 AKALQRGVDIVVATPGRLIDHLQNRVVRLDQVEIF 155
>gi|390349460|ref|XP_793382.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
[Strongylocentrotus purpuratus]
Length = 605
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 8/156 (5%)
Query: 268 KSFKELGCSDY--MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++F+E DY ++ + +Q F +PS IQ+ +P ++G I Q+GSGKTLA+LLP
Sbjct: 347 RTFEE-AFEDYPEILREIYKQKFTKPSPIQSQGWPVALKGHDLIGIAQTGSGKTLAFLLP 405
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L +LQ ++ + G P V++L+PT ELA Q+ S S G+ +S+ V GG
Sbjct: 406 A---LIHTDLQPGARKSRGGPNVLVLSPTRELALQIESEVNKYSYKGI--KSVCVYGGGD 460
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
++ Q++ + +GV+++IATPGR LI I+ ++++
Sbjct: 461 RRKQIKVVSDGVEIIIATPGRLNDLIMNKIVNVMSV 496
>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
7894]
Length = 416
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|410646395|ref|ZP_11356846.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
gi|410134001|dbj|GAC05245.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
Length = 436
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + PS IQA A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
EL K G+ R ++L PT ELA+QV ++ K +P RS VV GG
Sbjct: 61 -----ELLNRGKHARGNQARALVLTPTRELAAQVGASVVDYGK-DLPLRSAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + ++ +L
Sbjct: 115 PQMIKLRKGVDILVATPGRLLDLYNQNAVRFDDL 148
>gi|238920509|ref|YP_002934024.1| ATP-dependent RNA helicase RhlE, putative [Edwardsiella ictaluri
93-146]
gi|238870078|gb|ACR69789.1| ATP-dependent RNA helicase RhlE, putative [Edwardsiella ictaluri
93-146]
Length = 440
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +++ Q + P+ IQ A P V++ + + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLCAELLRAVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q G + R +IL PT ELA+Q+ N R S+ +P RS+VV GG
Sbjct: 62 LLHQNPKSGKGRRPV---RALILTPTRELAAQIGENVREYSRH-LPLRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + + L
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLAHQNAVDL 147
>gi|383864227|ref|XP_003707581.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
[Megachile rotundata]
Length = 619
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 7/154 (4%)
Query: 272 ELGCSDY--MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
E DY ++E +++Q F +PS IQ A+P ++ GK I Q+G+GKTLA+LLP +
Sbjct: 221 EQAFEDYPEILEEIRKQGFTKPSPIQCQAWPVLLSGKDLIGIAQTGTGKTLAFLLPALIH 280
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ E Q +S P V+I+APT ELA Q+ S G+ +++ V GG +K Q
Sbjct: 281 I---EGQETPRSERSGPNVLIMAPTRELALQIEKEVNKYSYHGI--KAVCVYGGGSRKEQ 335
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423
+ + +GV+++IATPGR L++ IL + ++ +
Sbjct: 336 VNIVTKGVEIVIATPGRLNDLVEANILNISSVTY 369
>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
Length = 473
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ ++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
L + VD+++ATPGR M L++ G + L
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFTRL 151
>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
DM98]
Length = 434
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++ ++ + +P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++S + R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RL--HAFYAENRSARRAVRALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFM 408
Q++ L+ GVD+++ATPGR +
Sbjct: 119 QIDALKRGVDIVVATPGRLL 138
>gi|440232027|ref|YP_007345820.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440053732|gb|AGB83635.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 442
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 6/145 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +I +L+ + + RP+ IQA A PP ++G+ + + +G+GKT A+LLPV+Q
Sbjct: 5 NFSELDLDERLINALRDKGYDRPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PRV+IL PT ELA QV R L+ +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRVLILTPTRELAMQVADQARELA-AHTSLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKE 413
E E D+++AT GR + IKE
Sbjct: 119 HAEVFSENQDLVVATTGRLLQYIKE 143
>gi|332244020|ref|XP_003271168.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Nomascus
leucogenys]
Length = 649
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 85/149 (57%), Gaps = 5/149 (3%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C ++E++K+ F +P+ IQ+ A+P V++G I Q+G+GKTL YL+P L +
Sbjct: 250 CYPEVMETIKKAGFPKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---D 306
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
LQ K P +++L PT ELA QV C S G RS+ V GG + Q+E L+
Sbjct: 307 LQPTLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKG--LRSVCVYGGGNRDEQIEELR 364
Query: 395 EGVDVLIATPGRFMFLIKEGILQLINLRW 423
+GVD++IATPGR L + L N+ +
Sbjct: 365 KGVDIIIATPGRLNDLQMNNFVNLKNITY 393
>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
taffensis DSM 16823]
gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
16823]
Length = 375
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 7/157 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL +++++LK + P+ IQ + P +++GK Q+G+GKT A+ LP++Q
Sbjct: 3 FDELNLLPHLLDALKELEYTTPTPIQEQSIPSLLQGKDLFGCAQTGTGKTAAFALPILQH 62
Query: 330 LRQE-ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++G R ++LAPT ELA+Q+ + +S K RSMV+ GG Q
Sbjct: 63 LDPDGQVKG-----KRPIRCLVLAPTRELANQINDSFKSYGKHS-KLRSMVIFGGVNQNK 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q+ L G+D+L+ATPGR + L+ +G +QL + +
Sbjct: 117 QVNQLNAGIDILVATPGRLLDLMNQGHIQLSKITHFV 153
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 4/141 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ +P++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANASASPARHPVRALILTPTRELADQVFESVKRYSKQ-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFM 408
Q E L+ G ++L+ATPGR +
Sbjct: 135 PQKEALRRGCEILVATPGRLL 155
>gi|423139268|ref|ZP_17126906.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051822|gb|EHY69713.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 453
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITQQPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVDVL+ATPGR + L + ++L
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNAVKL 147
>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 436
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + PS IQA A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFADLGLSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
EL K G+ R ++L PT ELA+QV ++ K +P RS VV GG
Sbjct: 61 -----ELLNRGKHARGNQARALVLTPTRELAAQVGASVVDYGK-DLPLRSAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
Q+ L++GVD+L+ATPGR + L + ++ +L
Sbjct: 115 PQMIKLRKGVDILVATPGRLLDLYNQNAVRFDDL 148
>gi|289740253|gb|ADD18874.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
Length = 692
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++ + +Q F PS IQ+ A+P +++G+ I Q+G+GKTLA+LLP + + E Q +
Sbjct: 287 LLDEVTKQGFQTPSPIQSQAWPILLKGEDMIGIAQTGTGKTLAFLLPALIHI---EYQSI 343
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
+S G P V+ILAPT ELA Q+ S G+ +++ + GG + Q++N+ GV+
Sbjct: 344 PRSQRGGPNVLILAPTRELALQIEKEVNKYSFRGI--KAVCIYGGGNRNDQIQNVGRGVE 401
Query: 399 VLIATPGRFMFLIKEGILQLINLRW 423
V+I TPGR L++ ++ + + +
Sbjct: 402 VIICTPGRLNDLVQANVIDVTTVTY 426
>gi|333899033|ref|YP_004472906.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333114298|gb|AEF20812.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 442
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ L ++ P+ +QA A PV++G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFASLGLIEPLLRCLDGLDYKTPTPVQAQAIGPVLKGRDIMAAAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E S S R ++L PT ELA QV + ++ S+ +P RS V GG
Sbjct: 62 RLMMEG----PVVASNSVRALVLVPTRELAEQVQQSVQTYSQF-LPLRSYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
Q+ L++G+DVL+ATPGR + L ++ ++ L+
Sbjct: 117 QMMKLRKGLDVLVATPGRLLDLYRQSAVKFSQLQ 150
>gi|329948141|ref|ZP_08295013.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328522874|gb|EGF49979.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 525
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 14/179 (7%)
Query: 248 PTD-CPKQRHKYSADGDFFSRK-------SFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
PTD P H+ SA F S K +F LG + L + F P IQA
Sbjct: 5 PTDRTPVAAHRTSASYRFASGKAPSAGEATFASLGVDSDLAADLDSRGFTAPFPIQAATL 64
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359
P + G+ + ++GSGKTLA+ LP++QRL Q++ K+ G P ++LAPT ELA
Sbjct: 65 PDTLAGRDVLGRGRTGSGKTLAFSLPLVQRLAQQD-----KARPGHPIGLVLAPTRELAL 119
Query: 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++ V + GG K Q + L+ GVDV++A PGR + L+ +G++ L
Sbjct: 120 QIAEVIEPLARV-VDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQGLVSL 177
>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
Length = 710
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF + G ++E++K+ + +P+ +Q A P ++ G+ + Q+GSGKT A++LP++
Sbjct: 270 QSFDQSGLRSILLENIKKSGYTKPTPVQKYAIPIIMSGRDVMACAQTGSGKTAAFVLPIL 329
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + + + +S P +I++PT EL SQ+ + + S + R V+ GG
Sbjct: 330 HSLLENQRDLVKTGSSCEPHAIIISPTRELTSQIYTQFKKFSLNSI-IRVEVIYGGTSIS 388
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425
Q + G VL+ATPGR + I G + L +LR++
Sbjct: 389 HQTNKVFNGCHVLVATPGRLLDFIGRGKVVLSSLRFFV 426
>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
Ech586]
gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
Length = 452
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q + P+ +Q+ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFQSLGLSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + + R +IL PT ELA+Q+ N ++ SK + RS+VV GG
Sbjct: 62 LLNESPVLAKGRRPV---RALILTPTRELAAQIGENVQAYSKY-LRLRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L+ GVD+LIATPGR + L + + L
Sbjct: 118 QMMKLRGGVDILIATPGRLLDLEHQNAVDL 147
>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 6/158 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ ++ + + P+ IQA A P V+ G + Q+G+GKT + LP++
Sbjct: 2 TFDDLGLAQPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+L E K+ +G P R +IL PT ELA+QV + R+ K + SMV+ GG
Sbjct: 62 KLAAGE---PVKNRNGRPAIRALILTPTRELAAQVEESVRTYGKY-LQLTSMVIFGGVGM 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
Q++ L++GVD+L+ATPGR + ++G + L ++++
Sbjct: 118 GPQVDRLRKGVDILVATPGRLLDHHQQGTIDLSQVQFF 155
>gi|403737600|ref|ZP_10950328.1| putative ATP-dependent RNA helicase [Austwickia chelonae NBRC
105200]
gi|403191712|dbj|GAB77098.1| putative ATP-dependent RNA helicase [Austwickia chelonae NBRC
105200]
Length = 447
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D + L R +P IQA P + GK + Q+GSGKT+A+ LP + R
Sbjct: 7 FAALGLPDAAVRRLARGGITQPFPIQAATIPDALAGKDVLGRGQTGSGKTMAFGLPTLTR 66
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q E S PR ++L PT ELA QV ++ + R +V GG +Q
Sbjct: 67 LAQGE-----PSEPKRPRALVLVPTRELAMQVSDALEPIAHV-LGLRHKLVAGGLAYTSQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQL 418
+ L+ GVD+LIATPGR M L+ G ++L
Sbjct: 121 IAALERGVDLLIATPGRLMDLLDRGAVRL 149
>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
Length = 645
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 83/132 (62%), Gaps = 5/132 (3%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+IES+KR F +P+ IQ+ A+P +++G I Q+G+GKTL+YL+P L Q +
Sbjct: 252 LIESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLNN---QPI 308
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C S G+ +S+ + GG ++ Q+ ++ +G+D
Sbjct: 309 SREERNGPGMLVLTPTRELALQVEAECSKYSYKGL--KSICIFGGRNREQQIRDITKGID 366
Query: 399 VLIATPGRFMFL 410
++IATPGR +L
Sbjct: 367 IIIATPGRLNYL 378
>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 442
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 6/150 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++ ++ + +PS IQ+ A P V++G + Q+G+GKT + LP++Q
Sbjct: 2 TFNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++ Q S R ++L PT ELA+QV ++ R K +P R+ VV GG +
Sbjct: 62 RLSEKPAQ-----KSRPIRALVLTPTRELAAQVEASFRLYGKH-LPLRTTVVFGGVSIRP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQL 418
Q+ L++GVD+L+ATPGR + + + + L
Sbjct: 116 QITTLRQGVDILVATPGRLLDHVSQKTIDL 145
>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
Length = 618
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 11/157 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SFK++G D ++++++ + F P+ IQ +A P ++ G++ I+A ++G+GKT A+ LP+I
Sbjct: 4 SFKDIGLEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGLPLI 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR + G PR ++L PT ELA QV + S P R VV GG
Sbjct: 64 QELR---------ADLGHPRALVLVPTRELAMQVAAEIESFRIETYP-RIAVVYGGSSMS 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424
QL L++G ++++ TPGR + I+ G L L + ++
Sbjct: 114 EQLRALKKGAEIIVGTPGRIIDHIERGSLDLTQIEYF 150
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,264,179,762
Number of Sequences: 23463169
Number of extensions: 332607814
Number of successful extensions: 1195625
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 20169
Number of HSP's successfully gapped in prelim test: 6006
Number of HSP's that attempted gapping in prelim test: 1131504
Number of HSP's gapped (non-prelim): 30854
length of query: 439
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 293
effective length of database: 8,933,572,693
effective search space: 2617536799049
effective search space used: 2617536799049
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)