Query 013623
Match_columns 439
No_of_seqs 229 out of 1849
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.1E-35 2.3E-40 312.2 17.9 169 266-438 89-262 (519)
2 KOG0330 ATP-dependent RNA heli 100.0 3.2E-36 6.8E-41 302.4 13.2 158 266-433 59-217 (476)
3 KOG0348 ATP-dependent RNA heli 100.0 5.3E-34 1.1E-38 295.0 17.0 172 264-438 132-310 (708)
4 KOG0341 DEAD-box protein abstr 100.0 2E-35 4.4E-40 296.3 5.4 226 212-438 112-349 (610)
5 KOG0338 ATP-dependent RNA heli 100.0 1.2E-33 2.6E-38 291.0 10.9 158 268-432 181-339 (691)
6 COG0513 SrmB Superfamily II DN 100.0 8.4E-33 1.8E-37 294.7 16.1 159 268-433 29-187 (513)
7 PRK04837 ATP-dependent RNA hel 100.0 5.1E-32 1.1E-36 281.2 17.4 164 267-433 7-170 (423)
8 PTZ00110 helicase; Provisional 100.0 7.2E-32 1.6E-36 289.5 16.4 162 267-433 129-290 (545)
9 KOG0347 RNA helicase [RNA proc 100.0 1.5E-31 3.3E-36 277.5 14.5 170 267-437 180-359 (731)
10 PLN00206 DEAD-box ATP-dependen 100.0 5.1E-31 1.1E-35 281.2 17.6 164 267-433 120-283 (518)
11 KOG0339 ATP-dependent RNA heli 100.0 2.2E-31 4.8E-36 274.1 12.4 163 265-432 220-382 (731)
12 KOG0345 ATP-dependent RNA heli 100.0 6.6E-31 1.4E-35 269.1 14.9 168 268-439 4-181 (567)
13 PRK10590 ATP-dependent RNA hel 100.0 1.2E-30 2.6E-35 274.1 17.1 162 268-433 1-162 (456)
14 KOG0342 ATP-dependent RNA heli 100.0 6.4E-31 1.4E-35 270.4 13.8 163 266-433 80-243 (543)
15 PRK11776 ATP-dependent RNA hel 100.0 2E-30 4.3E-35 272.0 16.4 157 268-433 4-160 (460)
16 KOG0346 RNA helicase [RNA proc 100.0 6.2E-31 1.3E-35 267.5 10.6 161 268-431 19-181 (569)
17 PRK11192 ATP-dependent RNA hel 100.0 6.8E-30 1.5E-34 265.8 17.5 159 269-433 2-160 (434)
18 PRK04537 ATP-dependent RNA hel 100.0 4.5E-30 9.8E-35 277.0 16.8 163 268-433 9-172 (572)
19 KOG0335 ATP-dependent RNA heli 100.0 1E-30 2.2E-35 271.3 10.3 168 268-436 74-242 (482)
20 KOG0333 U5 snRNP-like RNA heli 100.0 2.5E-30 5.4E-35 267.4 12.5 191 229-432 218-408 (673)
21 PRK11634 ATP-dependent RNA hel 100.0 7E-30 1.5E-34 278.0 16.6 157 268-433 6-162 (629)
22 KOG0340 ATP-dependent RNA heli 100.0 3.9E-30 8.6E-35 256.2 10.6 156 267-432 6-165 (442)
23 KOG0334 RNA helicase [RNA proc 100.0 2.1E-29 4.6E-34 277.0 13.8 163 266-433 363-528 (997)
24 KOG0326 ATP-dependent RNA heli 100.0 5.5E-30 1.2E-34 252.4 6.6 160 267-436 84-244 (459)
25 KOG0336 ATP-dependent RNA heli 100.0 8.5E-30 1.8E-34 257.3 7.5 167 267-438 218-390 (629)
26 PRK01297 ATP-dependent RNA hel 100.0 1.4E-28 3E-33 259.4 16.8 164 268-434 87-251 (475)
27 KOG0343 RNA Helicase [RNA proc 100.0 7.3E-29 1.6E-33 257.7 13.6 159 267-432 68-227 (758)
28 KOG0328 Predicted ATP-dependen 100.0 1.6E-28 3.4E-33 239.0 10.6 158 266-433 25-182 (400)
29 PTZ00424 helicase 45; Provisio 100.0 1.1E-27 2.5E-32 245.4 16.1 156 268-433 28-183 (401)
30 KOG0350 DEAD-box ATP-dependent 99.9 1.2E-26 2.6E-31 239.2 16.6 160 268-436 127-311 (620)
31 cd00268 DEADc DEAD-box helicas 99.9 6.3E-26 1.4E-30 211.2 17.3 156 270-433 1-156 (203)
32 KOG0337 ATP-dependent RNA heli 99.9 5.5E-27 1.2E-31 237.8 7.5 157 268-433 21-177 (529)
33 KOG0329 ATP-dependent RNA heli 99.9 3.9E-26 8.4E-31 219.9 12.1 159 268-435 42-200 (387)
34 TIGR03817 DECH_helic helicase/ 99.9 5.2E-25 1.1E-29 244.0 15.6 148 274-434 20-171 (742)
35 KOG4284 DEAD box protein [Tran 99.9 1.5E-25 3.2E-30 236.1 10.3 158 267-434 24-181 (980)
36 KOG0332 ATP-dependent RNA heli 99.9 1.8E-25 4E-30 224.1 10.0 161 260-433 82-245 (477)
37 KOG0327 Translation initiation 99.9 5.8E-25 1.3E-29 221.3 6.2 154 268-431 26-180 (397)
38 PRK02362 ski2-like helicase; P 99.9 6.6E-24 1.4E-28 235.3 13.8 150 268-434 1-151 (737)
39 PRK00254 ski2-like helicase; P 99.9 2.9E-23 6.2E-28 229.7 14.8 150 269-434 2-152 (720)
40 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-22 4.1E-27 181.2 13.1 132 292-434 1-133 (169)
41 PRK13767 ATP-dependent helicas 99.9 2.2E-22 4.7E-27 226.8 15.3 156 275-434 18-186 (876)
42 KOG0344 ATP-dependent RNA heli 99.9 8.5E-23 1.9E-27 214.4 9.5 165 266-434 130-302 (593)
43 PRK12899 secA preprotein trans 99.9 4.5E-22 9.8E-27 220.2 14.1 149 270-433 64-228 (970)
44 PRK01172 ski2-like helicase; P 99.9 6.8E-22 1.5E-26 217.1 13.9 149 268-434 1-149 (674)
45 COG1201 Lhr Lhr-like helicases 99.9 2.3E-21 4.9E-26 213.8 12.5 154 275-434 8-163 (814)
46 KOG0349 Putative DEAD-box RNA 99.8 1.4E-20 3E-25 191.9 9.1 168 268-435 2-378 (725)
47 PRK09401 reverse gyrase; Revie 99.8 9.8E-20 2.1E-24 209.6 16.2 133 286-434 77-215 (1176)
48 TIGR02621 cas3_GSU0051 CRISPR- 99.8 7.7E-20 1.7E-24 202.7 12.8 133 286-434 12-184 (844)
49 PRK10917 ATP-dependent DNA hel 99.8 1.3E-19 2.8E-24 199.7 14.3 139 277-434 248-397 (681)
50 COG1205 Distinct helicase fami 99.8 1.5E-19 3.2E-24 202.6 13.4 151 276-436 56-211 (851)
51 TIGR00643 recG ATP-dependent D 99.8 2.1E-19 4.5E-24 196.4 14.1 137 279-434 225-371 (630)
52 PRK14701 reverse gyrase; Provi 99.8 2.6E-19 5.7E-24 210.6 15.2 143 277-434 66-214 (1638)
53 TIGR00614 recQ_fam ATP-depende 99.8 2E-19 4.4E-24 190.0 12.1 129 285-433 6-140 (470)
54 TIGR01054 rgy reverse gyrase. 99.8 4.2E-19 9.1E-24 204.5 15.5 141 278-434 66-213 (1171)
55 TIGR00580 mfd transcription-re 99.8 8.3E-19 1.8E-23 197.9 14.6 141 275-434 436-587 (926)
56 PLN03137 ATP-dependent DNA hel 99.8 1.3E-18 2.9E-23 196.2 13.2 147 268-434 435-595 (1195)
57 PRK10689 transcription-repair 99.8 5.5E-18 1.2E-22 194.9 14.7 135 280-433 591-735 (1147)
58 TIGR01389 recQ ATP-dependent D 99.8 4.2E-18 9.1E-23 184.6 12.9 133 281-433 3-140 (591)
59 PRK11057 ATP-dependent DNA hel 99.7 8.5E-18 1.9E-22 183.0 13.7 138 277-434 11-153 (607)
60 COG1204 Superfamily II helicas 99.7 2.3E-17 5E-22 183.0 11.6 145 275-435 16-161 (766)
61 PRK09200 preprotein translocas 99.7 1.2E-16 2.5E-21 177.1 13.8 131 286-433 75-212 (790)
62 PRK12898 secA preprotein trans 99.7 1.1E-16 2.4E-21 174.1 13.0 130 286-433 100-255 (656)
63 TIGR00963 secA preprotein tran 99.7 1E-16 2.2E-21 175.7 12.2 131 286-434 53-190 (745)
64 PRK09751 putative ATP-dependen 99.7 8.8E-17 1.9E-21 187.1 10.8 125 310-434 1-138 (1490)
65 KOG0952 DNA/RNA helicase MER3/ 99.7 1.1E-16 2.4E-21 176.7 8.4 143 285-434 105-252 (1230)
66 smart00487 DEXDc DEAD-like hel 99.7 9.7E-16 2.1E-20 137.8 13.0 139 285-434 3-143 (201)
67 TIGR03714 secA2 accessory Sec 99.6 7.9E-16 1.7E-20 169.5 12.9 132 286-433 67-208 (762)
68 PRK13104 secA preprotein trans 99.6 2.1E-15 4.6E-20 167.7 13.2 128 289-433 81-215 (896)
69 PHA02558 uvsW UvsW helicase; P 99.6 3.8E-15 8.2E-20 158.9 11.6 124 288-433 112-235 (501)
70 PRK05580 primosome assembly pr 99.6 1.3E-14 2.7E-19 160.2 15.4 121 290-433 144-271 (679)
71 COG1202 Superfamily II helicas 99.6 4.5E-15 9.7E-20 156.2 10.8 155 268-435 194-353 (830)
72 PRK13766 Hef nuclease; Provisi 99.6 9.7E-15 2.1E-19 162.8 12.7 135 287-435 12-146 (773)
73 PHA02653 RNA helicase NPH-II; 99.5 4.4E-14 9.6E-19 155.2 11.9 128 293-434 167-305 (675)
74 TIGR03158 cas3_cyano CRISPR-as 99.5 7.1E-14 1.5E-18 143.2 11.9 126 294-434 1-159 (357)
75 COG1111 MPH1 ERCC4-like helica 99.5 9.5E-14 2.1E-18 145.0 10.0 136 289-438 14-149 (542)
76 cd00046 DEXDc DEAD-like helica 99.5 3.8E-13 8.1E-18 114.0 11.8 118 306-435 1-118 (144)
77 PRK12904 preprotein translocas 99.5 1.4E-13 3E-18 152.9 11.5 129 286-433 78-214 (830)
78 PRK11664 ATP-dependent RNA hel 99.5 1.5E-13 3.3E-18 154.0 11.0 115 298-431 13-127 (812)
79 TIGR01970 DEAH_box_HrpB ATP-de 99.4 5E-13 1.1E-17 149.9 13.0 116 297-431 9-124 (819)
80 TIGR01407 dinG_rel DnaQ family 99.4 1.5E-12 3.2E-17 147.2 14.0 148 276-436 232-456 (850)
81 TIGR01587 cas3_core CRISPR-ass 99.4 5.5E-13 1.2E-17 135.2 8.7 115 307-435 1-139 (358)
82 KOG0354 DEAD-box like helicase 99.4 9.3E-13 2E-17 143.7 10.5 136 287-436 59-195 (746)
83 PRK13107 preprotein translocas 99.4 1.7E-12 3.7E-17 144.5 10.7 128 289-433 81-215 (908)
84 TIGR03117 cas_csf4 CRISPR-asso 99.3 7.3E-12 1.6E-16 136.7 13.7 126 301-436 12-222 (636)
85 PRK07246 bifunctional ATP-depe 99.3 1.2E-11 2.6E-16 139.2 13.0 134 286-435 242-451 (820)
86 PF04851 ResIII: Type III rest 99.2 2.2E-11 4.7E-16 110.0 8.8 129 290-435 3-161 (184)
87 COG0514 RecQ Superfamily II DN 99.2 2.5E-11 5.4E-16 130.8 10.1 134 281-434 7-145 (590)
88 KOG0951 RNA helicase BRR2, DEA 99.2 2.5E-11 5.4E-16 136.6 8.5 151 275-433 296-450 (1674)
89 TIGR00595 priA primosomal prot 99.2 5.8E-11 1.3E-15 127.2 9.8 102 309-433 1-106 (505)
90 COG1200 RecG RecG-like helicas 99.2 1.1E-10 2.3E-15 126.4 11.8 142 274-434 246-398 (677)
91 KOG0352 ATP-dependent DNA heli 99.2 8.5E-11 1.8E-15 120.9 9.8 135 278-433 6-154 (641)
92 PRK08074 bifunctional ATP-depe 99.1 5.8E-10 1.3E-14 127.3 13.7 133 290-435 257-470 (928)
93 KOG0351 ATP-dependent DNA heli 99.1 3E-10 6.4E-15 128.5 10.3 136 278-433 251-398 (941)
94 COG4581 Superfamily II RNA hel 99.1 2.5E-10 5.5E-15 129.0 9.5 134 283-437 113-246 (1041)
95 smart00489 DEXDc3 DEAD-like he 99.1 1.3E-09 2.8E-14 109.0 12.8 72 291-368 9-84 (289)
96 smart00488 DEXDc2 DEAD-like he 99.1 1.3E-09 2.8E-14 109.0 12.8 72 291-368 9-84 (289)
97 PRK09694 helicase Cas3; Provis 99.0 1.7E-09 3.6E-14 122.3 9.9 139 288-436 284-455 (878)
98 KOG0353 ATP-dependent DNA heli 99.0 2.5E-09 5.4E-14 108.8 9.7 139 273-431 76-226 (695)
99 COG1110 Reverse gyrase [DNA re 98.9 7.6E-09 1.6E-13 115.6 13.3 139 282-435 74-218 (1187)
100 PRK11448 hsdR type I restricti 98.9 5.7E-09 1.2E-13 120.8 12.4 131 289-432 412-552 (1123)
101 COG1061 SSL2 DNA or RNA helica 98.9 2.2E-09 4.8E-14 113.3 8.2 122 289-434 35-160 (442)
102 PRK11131 ATP-dependent RNA hel 98.9 3.7E-09 8E-14 122.6 9.4 109 298-431 82-197 (1294)
103 COG1197 Mfd Transcription-repa 98.9 1.6E-08 3.4E-13 115.1 13.9 139 276-433 580-729 (1139)
104 KOG0947 Cytoplasmic exosomal R 98.9 9.7E-09 2.1E-13 113.9 11.8 125 285-434 293-417 (1248)
105 PRK13103 secA preprotein trans 98.8 2.3E-08 4.9E-13 112.1 11.3 130 286-433 79-215 (913)
106 TIGR00603 rad25 DNA repair hel 98.8 1.1E-08 2.5E-13 113.2 8.9 124 289-433 254-388 (732)
107 KOG0948 Nuclear exosomal RNA h 98.7 2.6E-08 5.7E-13 108.3 8.4 121 290-434 129-249 (1041)
108 PRK11747 dinG ATP-dependent DN 98.7 1.5E-07 3.1E-12 104.8 13.5 65 287-363 23-96 (697)
109 KOG0951 RNA helicase BRR2, DEA 98.7 2.8E-08 6.1E-13 112.6 7.6 126 288-434 1141-1267(1674)
110 PRK12326 preprotein translocas 98.6 1.1E-07 2.5E-12 104.5 10.6 130 286-433 75-211 (764)
111 PRK12906 secA preprotein trans 98.6 1.3E-07 2.9E-12 105.4 10.3 130 286-433 77-213 (796)
112 COG1199 DinG Rad3-related DNA 98.6 1.9E-07 4E-12 102.8 9.3 74 284-368 9-86 (654)
113 TIGR00348 hsdR type I site-spe 98.5 3.3E-07 7.2E-12 101.5 10.7 126 291-433 239-378 (667)
114 COG1198 PriA Primosomal protei 98.5 2.3E-07 5.1E-12 102.8 9.4 120 289-431 197-324 (730)
115 CHL00122 secA preprotein trans 98.5 5.5E-07 1.2E-11 100.8 9.8 130 286-433 73-209 (870)
116 KOG0949 Predicted helicase, DE 98.5 4.2E-07 9E-12 101.4 8.6 132 290-433 511-645 (1330)
117 TIGR01967 DEAH_box_HrpA ATP-de 98.5 1E-06 2.2E-11 102.9 12.0 128 285-431 59-190 (1283)
118 PF07517 SecA_DEAD: SecA DEAD- 98.4 1.9E-06 4.1E-11 85.6 12.0 129 288-433 75-210 (266)
119 PRK12902 secA preprotein trans 98.4 2.3E-06 4.9E-11 96.1 11.6 128 289-433 84-218 (939)
120 COG4096 HsdR Type I site-speci 98.3 2.7E-06 5.9E-11 94.2 11.4 123 289-431 164-296 (875)
121 TIGR00604 rad3 DNA repair heli 98.3 2.9E-06 6.3E-11 94.6 11.6 74 286-368 6-83 (705)
122 PF07652 Flavi_DEAD: Flaviviru 98.3 3.6E-06 7.8E-11 76.3 8.5 105 305-433 4-108 (148)
123 COG4098 comFA Superfamily II D 98.2 6.9E-06 1.5E-10 83.4 11.0 115 290-433 97-215 (441)
124 PF00176 SNF2_N: SNF2 family N 98.1 6.2E-06 1.3E-10 80.5 8.1 116 304-433 24-147 (299)
125 KOG0952 DNA/RNA helicase MER3/ 98.1 9.5E-07 2E-11 99.3 0.7 134 288-435 925-1061(1230)
126 PF14617 CMS1: U3-containing 9 98.0 1.5E-05 3.2E-10 78.6 6.9 87 341-429 122-210 (252)
127 PLN03142 Probable chromatin-re 97.8 8.1E-05 1.7E-09 85.9 10.4 130 290-434 169-305 (1033)
128 PRK12903 secA preprotein trans 97.8 0.0001 2.2E-09 83.0 10.4 130 286-433 75-211 (925)
129 KOG0950 DNA polymerase theta/e 97.8 3.5E-05 7.6E-10 86.5 6.4 145 274-434 206-355 (1008)
130 COG4889 Predicted helicase [Ge 97.7 0.00023 5.1E-09 79.5 11.1 138 278-432 149-316 (1518)
131 PRK14873 primosome assembly pr 97.7 6.1E-05 1.3E-09 83.6 6.0 95 314-430 169-267 (665)
132 COG1203 CRISPR-associated heli 97.6 8.3E-05 1.8E-09 83.5 6.7 136 291-435 196-353 (733)
133 PRK04914 ATP-dependent helicas 97.6 0.00021 4.6E-09 82.1 8.9 129 290-433 152-285 (956)
134 PRK15483 type III restriction- 97.5 0.00022 4.7E-09 81.5 8.6 119 306-434 60-215 (986)
135 KOG0385 Chromatin remodeling c 97.5 0.00026 5.6E-09 78.2 8.6 130 290-434 167-303 (971)
136 PF13604 AAA_30: AAA domain; P 97.5 0.00013 2.7E-09 69.0 5.0 64 290-365 1-66 (196)
137 PRK12900 secA preprotein trans 97.4 0.00031 6.7E-09 80.1 7.1 128 289-433 137-271 (1025)
138 KOG1132 Helicase of the DEAD s 97.3 0.0015 3.3E-08 73.3 11.2 43 290-332 21-67 (945)
139 TIGR00376 DNA helicase, putati 97.2 0.0019 4.1E-08 71.6 11.0 67 289-367 156-223 (637)
140 KOG0389 SNF2 family DNA-depend 97.2 0.0012 2.5E-08 73.4 8.7 130 291-434 400-538 (941)
141 KOG1802 RNA helicase nonsense 97.2 0.0022 4.7E-08 70.2 10.1 82 285-382 405-486 (935)
142 KOG1803 DNA helicase [Replicat 97.1 0.0016 3.4E-08 70.7 8.9 64 290-365 185-249 (649)
143 KOG1123 RNA polymerase II tran 97.1 0.0014 3.1E-08 69.7 8.2 119 289-433 301-435 (776)
144 PF13086 AAA_11: AAA domain; P 97.1 0.0012 2.7E-08 61.4 6.7 73 291-367 2-75 (236)
145 PF02562 PhoH: PhoH-like prote 97.1 0.00074 1.6E-08 64.8 5.0 60 288-357 2-61 (205)
146 COG1643 HrpA HrpA-like helicas 97.0 0.0022 4.9E-08 72.8 9.5 114 299-430 59-172 (845)
147 PRK12901 secA preprotein trans 97.0 0.00082 1.8E-08 76.9 5.4 127 290-433 169-303 (1112)
148 KOG2340 Uncharacterized conser 97.0 0.0022 4.7E-08 68.7 7.7 144 289-433 215-428 (698)
149 PF13245 AAA_19: Part of AAA d 96.9 0.0023 4.9E-08 51.8 5.9 59 299-365 3-62 (76)
150 PF12340 DUF3638: Protein of u 96.7 0.026 5.7E-07 55.0 12.9 151 269-433 4-185 (229)
151 PF09848 DUF2075: Uncharacteri 96.7 0.0023 5.1E-08 65.6 5.3 94 308-434 4-97 (352)
152 KOG0387 Transcription-coupled 96.6 0.016 3.6E-07 64.6 11.7 144 268-434 190-351 (923)
153 KOG0920 ATP-dependent RNA heli 96.6 0.013 2.8E-07 67.0 10.8 122 292-430 175-297 (924)
154 PF00580 UvrD-helicase: UvrD/R 96.5 0.003 6.5E-08 61.9 5.0 70 291-370 1-70 (315)
155 KOG0391 SNF2 family DNA-depend 96.3 0.021 4.5E-07 66.1 10.3 138 273-433 606-750 (1958)
156 TIGR02768 TraA_Ti Ti-type conj 96.3 0.037 8.1E-07 62.6 12.4 75 275-362 338-413 (744)
157 COG0610 Type I site-specific r 96.3 0.01 2.2E-07 68.9 7.9 112 307-433 275-389 (962)
158 KOG0926 DEAH-box RNA helicase 96.2 0.024 5.1E-07 63.6 9.9 115 301-431 267-383 (1172)
159 PF02399 Herpes_ori_bp: Origin 96.1 0.0074 1.6E-07 67.9 5.7 107 308-436 52-158 (824)
160 PF05970 PIF1: PIF1-like helic 96.1 0.016 3.4E-07 60.0 7.3 67 291-369 2-76 (364)
161 PRK13889 conjugal transfer rel 95.9 0.03 6.5E-07 65.0 9.6 61 290-362 346-407 (988)
162 TIGR01448 recD_rel helicase, p 95.9 0.043 9.4E-07 61.9 10.6 65 289-363 322-386 (720)
163 KOG4439 RNA polymerase II tran 95.9 0.0092 2E-07 65.8 4.8 139 291-434 326-477 (901)
164 KOG1002 Nucleotide excision re 95.9 0.022 4.8E-07 60.8 7.3 128 289-434 183-330 (791)
165 KOG0390 DNA repair protein, SN 95.8 0.048 1E-06 61.5 10.2 137 290-435 238-391 (776)
166 COG0556 UvrB Helicase subunit 95.7 0.0084 1.8E-07 64.5 3.7 66 290-370 12-82 (663)
167 TIGR01447 recD exodeoxyribonuc 95.7 0.05 1.1E-06 60.0 9.6 68 293-367 148-215 (586)
168 PRK10875 recD exonuclease V su 95.6 0.028 6.1E-07 62.2 7.5 69 292-368 154-222 (615)
169 COG3587 Restriction endonuclea 95.6 0.037 8E-07 62.4 8.1 119 306-434 75-219 (985)
170 KOG4150 Predicted ATP-dependen 95.4 0.017 3.7E-07 62.6 4.7 144 281-434 277-426 (1034)
171 KOG0922 DEAH-box RNA helicase 95.4 0.11 2.3E-06 57.4 10.7 113 298-430 59-173 (674)
172 PF13401 AAA_22: AAA domain; P 95.2 0.051 1.1E-06 46.6 6.1 18 304-321 3-20 (131)
173 TIGR02562 cas3_yersinia CRISPR 95.0 0.077 1.7E-06 61.5 8.4 135 291-436 409-609 (1110)
174 cd00009 AAA The AAA+ (ATPases 94.9 0.11 2.3E-06 43.9 7.3 16 305-320 19-34 (151)
175 TIGR00631 uvrb excinuclease AB 94.9 0.092 2E-06 58.6 8.6 66 290-370 9-79 (655)
176 KOG1805 DNA replication helica 94.7 0.095 2.1E-06 59.9 8.1 125 288-433 667-809 (1100)
177 KOG0924 mRNA splicing factor A 94.5 0.15 3.3E-06 56.6 8.8 119 293-431 359-479 (1042)
178 KOG0388 SNF2 family DNA-depend 94.4 0.032 7E-07 61.8 3.6 123 294-434 571-709 (1185)
179 PRK04296 thymidine kinase; Pro 94.3 0.037 8E-07 52.0 3.3 30 402-434 63-92 (190)
180 KOG0925 mRNA splicing factor A 94.3 0.25 5.4E-06 53.1 9.5 137 267-430 24-169 (699)
181 smart00382 AAA ATPases associa 94.2 0.039 8.5E-07 45.9 2.9 17 305-321 2-18 (148)
182 KOG0384 Chromodomain-helicase 94.2 0.067 1.4E-06 62.3 5.5 129 289-433 369-510 (1373)
183 PRK11331 5-methylcytosine-spec 94.2 0.17 3.6E-06 54.2 8.1 24 298-321 187-210 (459)
184 COG0653 SecA Preprotein transl 94.1 0.081 1.8E-06 60.0 6.0 127 290-433 80-213 (822)
185 PRK13826 Dtr system oriT relax 93.7 0.58 1.3E-05 55.2 12.0 76 274-362 366-442 (1102)
186 PRK11054 helD DNA helicase IV; 93.6 0.35 7.6E-06 54.4 9.8 72 288-369 194-265 (684)
187 COG1484 DnaC DNA replication p 93.5 0.14 3.1E-06 50.5 5.8 50 304-366 104-153 (254)
188 COG1875 NYN ribonuclease and A 93.5 0.18 4E-06 52.5 6.7 65 286-359 224-290 (436)
189 PRK05298 excinuclease ABC subu 93.4 0.31 6.7E-06 54.5 9.0 66 290-370 12-82 (652)
190 COG2805 PilT Tfp pilus assembl 93.4 0.094 2E-06 53.3 4.4 116 267-404 105-230 (353)
191 KOG1000 Chromatin remodeling p 93.2 0.42 9E-06 51.5 9.0 140 265-434 179-322 (689)
192 PRK13894 conjugal transfer ATP 93.1 0.19 4.2E-06 51.3 6.2 48 280-330 124-172 (319)
193 PRK06526 transposase; Provisio 93.0 0.18 3.9E-06 49.8 5.7 20 302-321 95-114 (254)
194 KOG0953 Mitochondrial RNA heli 93.0 0.046 1E-06 59.2 1.6 98 306-435 192-290 (700)
195 PRK14722 flhF flagellar biosyn 92.8 0.33 7.3E-06 50.7 7.6 126 268-407 81-227 (374)
196 PRK10536 hypothetical protein; 92.4 0.17 3.7E-06 50.4 4.6 47 286-332 55-101 (262)
197 PRK10919 ATP-dependent DNA hel 92.3 0.2 4.3E-06 56.1 5.6 70 290-369 2-71 (672)
198 PRK08181 transposase; Validate 92.0 0.57 1.2E-05 46.8 7.9 17 304-320 105-121 (269)
199 PF13872 AAA_34: P-loop contai 92.0 0.85 1.8E-05 46.4 9.0 137 272-433 25-185 (303)
200 TIGR01074 rep ATP-dependent DN 92.0 0.38 8.2E-06 53.5 7.2 69 291-369 2-70 (664)
201 PRK10689 transcription-repair 91.8 0.72 1.6E-05 54.8 9.6 80 345-433 809-892 (1147)
202 KOG0386 Chromatin remodeling c 91.8 0.19 4.2E-06 57.7 4.6 132 290-436 394-531 (1157)
203 PRK13833 conjugal transfer pro 91.4 0.45 9.7E-06 48.8 6.5 45 283-330 123-168 (323)
204 PF07728 AAA_5: AAA domain (dy 91.1 0.069 1.5E-06 46.7 0.2 14 307-320 1-14 (139)
205 TIGR01075 uvrD DNA helicase II 91.0 0.28 6.1E-06 55.2 5.0 72 289-370 3-74 (715)
206 TIGR02785 addA_Gpos recombinat 91.0 0.46 1E-05 56.8 7.0 122 291-430 2-125 (1232)
207 cd01126 TraG_VirD4 The TraG/Tr 90.9 0.24 5.2E-06 51.3 4.0 48 307-368 1-48 (384)
208 TIGR03420 DnaA_homol_Hda DnaA 90.9 1.1 2.5E-05 42.1 8.4 18 304-321 37-54 (226)
209 PHA02533 17 large terminase pr 90.8 0.7 1.5E-05 50.6 7.6 124 290-434 59-183 (534)
210 COG4962 CpaF Flp pilus assembl 90.7 0.37 8.1E-06 49.7 5.1 86 260-363 132-218 (355)
211 TIGR02760 TraI_TIGR conjugativ 90.6 1.2 2.7E-05 55.6 10.4 63 290-364 429-493 (1960)
212 PRK12402 replication factor C 90.5 0.92 2E-05 45.4 7.7 39 268-321 12-52 (337)
213 PRK11773 uvrD DNA-dependent he 90.3 0.36 7.7E-06 54.5 5.0 72 289-370 8-79 (721)
214 KOG0923 mRNA splicing factor A 90.2 1.1 2.3E-05 50.0 8.2 113 295-430 270-388 (902)
215 TIGR02782 TrbB_P P-type conjug 90.0 0.78 1.7E-05 46.4 6.7 48 280-330 108-156 (299)
216 cd01122 GP4d_helicase GP4d_hel 89.9 0.33 7.2E-06 47.4 3.9 45 277-321 2-46 (271)
217 KOG1131 RNA polymerase II tran 89.8 1.9 4.1E-05 47.0 9.5 43 288-330 14-60 (755)
218 TIGR00580 mfd transcription-re 89.8 1.5 3.2E-05 51.1 9.5 81 344-433 659-743 (926)
219 PRK08727 hypothetical protein; 89.8 0.53 1.2E-05 45.6 5.2 50 306-368 42-91 (233)
220 COG3973 Superfamily I DNA and 89.7 1.2 2.7E-05 49.1 8.2 61 304-370 225-285 (747)
221 PF05621 TniB: Bacterial TniB 89.7 1.1 2.5E-05 45.5 7.6 56 306-366 62-117 (302)
222 COG0553 HepA Superfamily II DN 89.7 0.63 1.4E-05 52.4 6.4 134 289-434 337-486 (866)
223 PRK06995 flhF flagellar biosyn 89.7 1.5 3.2E-05 47.5 8.8 113 304-429 255-375 (484)
224 PF06862 DUF1253: Protein of u 89.6 0.98 2.1E-05 48.3 7.3 89 344-433 36-174 (442)
225 KOG1133 Helicase of the DEAD s 89.5 0.38 8.3E-06 53.5 4.3 44 290-333 15-62 (821)
226 PRK07952 DNA replication prote 89.4 1.4 3E-05 43.4 7.8 24 306-330 100-123 (244)
227 PF02534 T4SS-DNA_transf: Type 89.4 0.33 7.1E-06 51.5 3.6 49 306-368 45-93 (469)
228 TIGR03015 pepcterm_ATPase puta 89.3 3.5 7.6E-05 39.9 10.5 32 290-321 23-59 (269)
229 PRK12727 flagellar biosynthesi 88.6 2.8 6.1E-05 46.0 10.0 19 304-322 349-367 (559)
230 PF03354 Terminase_1: Phage Te 88.5 0.81 1.8E-05 49.1 5.9 71 293-371 1-80 (477)
231 PRK04537 ATP-dependent RNA hel 88.3 3.5 7.7E-05 45.4 10.8 75 344-429 256-334 (572)
232 PF06733 DEAD_2: DEAD_2; Inte 88.3 0.36 7.9E-06 44.3 2.7 47 390-437 113-162 (174)
233 cd01120 RecA-like_NTPases RecA 88.2 1.5 3.2E-05 38.1 6.4 14 308-321 2-15 (165)
234 TIGR02881 spore_V_K stage V sp 88.2 1.1 2.3E-05 44.0 6.1 17 305-321 42-58 (261)
235 PRK13900 type IV secretion sys 88.1 0.67 1.4E-05 47.7 4.7 29 301-330 156-184 (332)
236 KOG0741 AAA+-type ATPase [Post 88.1 0.58 1.3E-05 51.0 4.3 50 268-320 216-271 (744)
237 PRK14723 flhF flagellar biosyn 88.0 2.7 5.9E-05 47.9 9.8 24 79-102 24-47 (767)
238 KOG0392 SNF2 family DNA-depend 87.9 1.1 2.4E-05 52.8 6.6 127 294-433 979-1113(1549)
239 PRK00411 cdc6 cell division co 87.8 0.65 1.4E-05 47.8 4.5 17 305-321 55-71 (394)
240 TIGR01073 pcrA ATP-dependent D 87.8 0.71 1.5E-05 52.1 5.1 72 289-370 3-74 (726)
241 TIGR03499 FlhF flagellar biosy 87.7 1.7 3.6E-05 43.5 7.2 18 305-322 194-211 (282)
242 PRK13897 type IV secretion sys 87.7 0.82 1.8E-05 50.8 5.4 49 306-368 159-207 (606)
243 PF05876 Terminase_GpA: Phage 87.6 0.26 5.6E-06 54.1 1.5 128 290-435 16-149 (557)
244 TIGR02928 orc1/cdc6 family rep 87.6 0.89 1.9E-05 46.2 5.3 24 306-330 41-64 (365)
245 COG4185 Uncharacterized protei 87.5 1.9 4E-05 40.5 6.8 38 308-361 5-42 (187)
246 PLN03025 replication factor C 87.5 1.7 3.7E-05 43.9 7.3 41 268-321 10-50 (319)
247 TIGR01650 PD_CobS cobaltochela 87.2 1.4 3.1E-05 45.3 6.5 19 302-320 61-79 (327)
248 COG1474 CDC6 Cdc6-related prot 87.0 2 4.3E-05 44.9 7.5 16 306-321 43-58 (366)
249 KOG3089 Predicted DEAD-box-con 87.0 0.61 1.3E-05 45.4 3.4 35 395-429 195-229 (271)
250 PRK13851 type IV secretion sys 86.8 0.63 1.4E-05 48.1 3.7 29 301-330 158-186 (344)
251 TIGR00362 DnaA chromosomal rep 86.6 1.7 3.7E-05 45.4 6.9 15 306-320 137-151 (405)
252 KOG0344 ATP-dependent RNA heli 86.6 2.6 5.7E-05 46.1 8.3 98 314-431 366-467 (593)
253 PRK10590 ATP-dependent RNA hel 86.1 5.4 0.00012 42.4 10.4 75 344-429 244-322 (456)
254 PF01695 IstB_IS21: IstB-like 86.1 0.8 1.7E-05 42.7 3.7 46 304-362 46-91 (178)
255 PRK14087 dnaA chromosomal repl 85.9 2 4.2E-05 46.0 7.0 48 306-365 142-190 (450)
256 PHA00729 NTP-binding motif con 85.7 2.3 5.1E-05 41.5 6.8 14 307-320 19-32 (226)
257 PRK14964 DNA polymerase III su 85.7 2.3 5E-05 46.1 7.4 40 268-322 10-52 (491)
258 PRK04837 ATP-dependent RNA hel 85.5 5.5 0.00012 41.7 10.0 73 345-428 255-331 (423)
259 PRK11192 ATP-dependent RNA hel 85.5 5.3 0.00012 41.9 9.9 72 344-426 244-319 (434)
260 PRK13764 ATPase; Provisional 85.3 0.8 1.7E-05 50.8 3.8 45 268-331 238-282 (602)
261 PF00308 Bac_DnaA: Bacterial d 85.2 1.9 4.1E-05 41.5 5.9 24 307-331 36-59 (219)
262 TIGR02525 plasmid_TraJ plasmid 85.1 0.92 2E-05 47.4 3.9 45 268-331 130-174 (372)
263 PTZ00112 origin recognition co 85.1 3.2 6.9E-05 48.2 8.4 15 308-322 784-798 (1164)
264 PRK05703 flhF flagellar biosyn 85.1 3.1 6.6E-05 44.3 7.9 18 305-322 221-238 (424)
265 COG1419 FlhF Flagellar GTP-bin 85.1 2.4 5.2E-05 44.8 6.9 90 304-406 202-292 (407)
266 PRK08903 DnaA regulatory inact 85.0 2.7 5.9E-05 39.9 6.9 17 304-320 41-57 (227)
267 PRK13850 type IV secretion sys 84.9 1.2 2.6E-05 50.1 5.0 49 306-368 140-188 (670)
268 TIGR00631 uvrb excinuclease AB 84.9 5.8 0.00013 44.6 10.3 79 343-432 440-522 (655)
269 TIGR00064 ftsY signal recognit 84.9 5.9 0.00013 39.5 9.4 17 306-322 73-89 (272)
270 PF00437 T2SE: Type II/IV secr 84.9 0.56 1.2E-05 45.9 2.1 28 302-330 124-151 (270)
271 PRK13880 conjugal transfer cou 84.7 1.8 3.8E-05 48.5 6.1 48 305-366 175-222 (636)
272 PRK11889 flhF flagellar biosyn 84.5 4.1 8.9E-05 43.4 8.4 17 306-322 242-258 (436)
273 cd01129 PulE-GspE PulE/GspE Th 84.2 1 2.2E-05 44.8 3.5 35 295-330 68-104 (264)
274 PRK04195 replication factor C 84.0 6 0.00013 42.5 9.7 44 268-320 11-54 (482)
275 PRK00149 dnaA chromosomal repl 83.8 2.5 5.5E-05 44.9 6.6 15 306-320 149-163 (450)
276 KOG0991 Replication factor C, 83.6 1.8 3.9E-05 43.0 4.9 18 306-323 49-66 (333)
277 PRK08084 DNA replication initi 83.5 1.9 4E-05 41.8 5.1 16 305-320 45-60 (235)
278 TIGR01547 phage_term_2 phage t 83.4 1.1 2.4E-05 46.4 3.7 54 307-369 3-57 (396)
279 KOG0744 AAA+-type ATPase [Post 83.3 4.7 0.0001 41.8 7.9 70 305-383 177-258 (423)
280 COG0630 VirB11 Type IV secreto 82.9 2.6 5.7E-05 42.9 6.1 59 266-330 108-167 (312)
281 TIGR00959 ffh signal recogniti 82.8 5.5 0.00012 42.5 8.6 16 307-322 101-116 (428)
282 TIGR01425 SRP54_euk signal rec 82.5 5.8 0.00013 42.4 8.7 15 307-321 102-116 (429)
283 KOG0738 AAA+-type ATPase [Post 82.5 0.8 1.7E-05 48.3 2.1 48 3-52 5-52 (491)
284 PRK14974 cell division protein 82.5 6.8 0.00015 40.5 8.9 15 307-321 142-156 (336)
285 PRK10436 hypothetical protein; 82.5 1.3 2.7E-05 47.8 3.7 48 268-330 195-242 (462)
286 COG1197 Mfd Transcription-repa 82.2 4.9 0.00011 47.5 8.5 82 343-433 801-886 (1139)
287 TIGR02538 type_IV_pilB type IV 82.1 1.3 2.8E-05 48.8 3.7 25 305-330 316-340 (564)
288 PRK13876 conjugal transfer cou 82.0 2 4.3E-05 48.3 5.2 49 305-367 144-192 (663)
289 PRK06893 DNA replication initi 82.0 2.3 5E-05 41.0 5.1 15 306-320 40-54 (229)
290 TIGR02524 dot_icm_DotB Dot/Icm 82.0 1.2 2.5E-05 46.4 3.1 44 268-330 115-158 (358)
291 PRK06835 DNA replication prote 82.0 2.8 6.1E-05 43.1 5.9 47 304-363 182-228 (329)
292 cd01130 VirB11-like_ATPase Typ 81.9 1.5 3.2E-05 40.7 3.6 32 290-321 9-41 (186)
293 cd01127 TrwB Bacterial conjuga 81.9 1.2 2.6E-05 46.8 3.3 32 299-331 36-67 (410)
294 COG1435 Tdk Thymidine kinase [ 81.8 1.6 3.6E-05 41.8 3.8 92 308-436 7-98 (201)
295 PF12846 AAA_10: AAA-like doma 81.8 1.4 3E-05 42.7 3.5 25 305-330 1-25 (304)
296 COG0513 SrmB Superfamily II DN 81.6 9.7 0.00021 41.4 10.2 68 347-425 275-346 (513)
297 PRK14721 flhF flagellar biosyn 81.4 2.6 5.6E-05 44.9 5.5 93 304-408 190-282 (420)
298 PRK14952 DNA polymerase III su 81.3 4.4 9.6E-05 44.9 7.5 42 268-324 10-54 (584)
299 PRK12723 flagellar biosynthesi 81.2 3 6.5E-05 43.9 5.9 18 305-322 174-191 (388)
300 PF03237 Terminase_6: Terminas 81.2 5.8 0.00013 39.3 7.7 105 309-434 1-111 (384)
301 PRK07003 DNA polymerase III su 81.1 7 0.00015 44.8 9.0 39 268-321 13-54 (830)
302 PRK11823 DNA repair protein Ra 81.1 3.7 7.9E-05 43.9 6.6 53 304-369 79-131 (446)
303 PHA03333 putative ATPase subun 81.1 11 0.00023 42.7 10.3 71 289-370 168-241 (752)
304 PRK11634 ATP-dependent RNA hel 81.1 5.8 0.00013 44.3 8.4 71 345-426 245-319 (629)
305 PRK00440 rfc replication facto 81.0 11 0.00023 37.3 9.6 41 268-321 14-54 (319)
306 PF10412 TrwB_AAD_bind: Type I 80.9 1.5 3.3E-05 45.8 3.6 52 300-363 10-61 (386)
307 PRK09111 DNA polymerase III su 80.9 3.5 7.7E-05 45.8 6.6 40 268-322 21-63 (598)
308 PRK13822 conjugal transfer cou 80.5 2.1 4.7E-05 47.8 4.8 50 305-368 224-273 (641)
309 PRK05642 DNA replication initi 80.5 2.7 5.9E-05 40.7 5.0 15 306-320 46-60 (234)
310 PF06745 KaiC: KaiC; InterPro 80.3 2 4.4E-05 40.8 4.0 54 304-369 18-71 (226)
311 PTZ00110 helicase; Provisional 80.3 8.1 0.00017 42.3 9.1 74 344-428 376-453 (545)
312 TIGR03881 KaiC_arch_4 KaiC dom 80.2 3.6 7.9E-05 39.0 5.7 52 304-368 19-70 (229)
313 TIGR03819 heli_sec_ATPase heli 80.2 2.9 6.3E-05 43.1 5.3 39 280-320 154-193 (340)
314 KOG0331 ATP-dependent RNA heli 80.1 5.5 0.00012 43.5 7.5 74 342-426 338-415 (519)
315 TIGR00643 recG ATP-dependent D 80.0 6.5 0.00014 43.8 8.4 81 344-433 447-539 (630)
316 TIGR00635 ruvB Holliday juncti 79.8 1.6 3.5E-05 43.3 3.3 15 306-320 31-45 (305)
317 PRK14088 dnaA chromosomal repl 79.7 5.1 0.00011 42.7 7.2 15 306-320 131-145 (440)
318 PRK06921 hypothetical protein; 79.7 6.8 0.00015 38.9 7.6 49 304-364 116-164 (266)
319 PRK11776 ATP-dependent RNA hel 79.7 13 0.00029 39.3 10.3 74 345-429 242-319 (460)
320 COG4098 comFA Superfamily II D 79.6 13 0.00029 38.8 9.6 79 344-431 304-384 (441)
321 TIGR02533 type_II_gspE general 79.4 1.9 4.2E-05 46.6 3.9 46 268-330 219-266 (486)
322 TIGR00763 lon ATP-dependent pr 79.4 3.6 7.7E-05 47.0 6.2 30 402-434 399-428 (775)
323 TIGR00614 recQ_fam ATP-depende 79.2 8.4 0.00018 41.1 8.7 75 344-429 225-303 (470)
324 TIGR03877 thermo_KaiC_1 KaiC d 79.2 1.6 3.5E-05 42.2 2.9 53 304-369 20-72 (237)
325 PLN00206 DEAD-box ATP-dependen 79.0 8.8 0.00019 41.6 8.8 74 345-428 367-444 (518)
326 PF13173 AAA_14: AAA domain 78.9 4.5 9.7E-05 35.1 5.4 16 305-320 2-17 (128)
327 PRK08691 DNA polymerase III su 78.7 3.6 7.8E-05 46.5 5.7 40 268-322 13-55 (709)
328 cd01124 KaiC KaiC is a circadi 78.6 2.2 4.8E-05 38.7 3.5 48 308-368 2-49 (187)
329 COG1219 ClpX ATP-dependent pro 78.3 0.97 2.1E-05 46.6 1.1 26 304-331 96-121 (408)
330 PF05496 RuvB_N: Holliday junc 78.2 4.9 0.00011 39.5 5.9 14 307-320 52-65 (233)
331 PRK10917 ATP-dependent DNA hel 77.9 8.7 0.00019 43.2 8.6 81 344-433 470-562 (681)
332 TIGR02237 recomb_radB DNA repa 77.8 5.2 0.00011 37.4 5.9 20 304-323 11-30 (209)
333 TIGR02767 TraG-Ti Ti-type conj 77.8 2.9 6.2E-05 46.7 4.7 49 306-368 212-260 (623)
334 PRK10416 signal recognition pa 77.5 18 0.00038 37.1 10.0 17 305-321 114-130 (318)
335 PRK01297 ATP-dependent RNA hel 77.4 16 0.00035 38.9 10.1 73 345-428 335-411 (475)
336 PRK06645 DNA polymerase III su 77.2 3.9 8.5E-05 44.5 5.4 40 268-322 18-60 (507)
337 COG3421 Uncharacterized protei 77.0 1.5 3.2E-05 48.5 2.1 40 395-434 80-126 (812)
338 PRK14956 DNA polymerase III su 77.0 5.8 0.00013 43.0 6.6 40 268-322 15-57 (484)
339 cd01121 Sms Sms (bacterial rad 76.9 8.4 0.00018 40.3 7.6 53 304-369 81-133 (372)
340 PRK14959 DNA polymerase III su 76.7 9.8 0.00021 42.5 8.4 40 268-322 13-55 (624)
341 PRK07994 DNA polymerase III su 76.6 12 0.00026 42.1 9.1 40 268-322 13-55 (647)
342 TIGR03158 cas3_cyano CRISPR-as 76.5 15 0.00033 37.8 9.4 72 344-427 271-342 (357)
343 KOG2227 Pre-initiation complex 76.5 3.1 6.8E-05 44.8 4.3 17 305-321 175-191 (529)
344 cd01125 repA Hexameric Replica 76.4 7.5 0.00016 37.4 6.7 61 308-368 4-67 (239)
345 KOG2228 Origin recognition com 76.2 18 0.00039 37.8 9.5 33 405-437 122-154 (408)
346 cd00079 HELICc Helicase superf 76.1 29 0.00064 28.8 9.6 76 344-430 27-106 (131)
347 KOG0333 U5 snRNP-like RNA heli 75.9 8.1 0.00017 42.3 7.2 71 344-425 516-590 (673)
348 PRK12726 flagellar biosynthesi 75.8 8.1 0.00018 40.9 7.1 18 305-322 206-223 (407)
349 TIGR02639 ClpA ATP-dependent C 75.8 3.1 6.8E-05 47.1 4.4 14 307-320 486-499 (731)
350 PRK05298 excinuclease ABC subu 75.0 25 0.00055 39.4 11.2 78 344-432 445-526 (652)
351 cd01128 rho_factor Transcripti 75.0 7.2 0.00016 38.5 6.2 18 303-320 14-31 (249)
352 TIGR02760 TraI_TIGR conjugativ 74.9 5.9 0.00013 49.8 6.8 66 289-362 1018-1085(1960)
353 PRK14949 DNA polymerase III su 74.9 5 0.00011 46.6 5.7 40 268-322 13-55 (944)
354 PF01443 Viral_helicase1: Vira 74.6 0.92 2E-05 42.8 -0.2 13 308-320 1-13 (234)
355 TIGR01420 pilT_fam pilus retra 74.4 2.7 5.9E-05 43.1 3.2 26 304-330 121-146 (343)
356 KOG0732 AAA+-type ATPase conta 74.4 2.6 5.5E-05 49.4 3.2 52 267-321 261-315 (1080)
357 PTZ00424 helicase 45; Provisio 74.4 21 0.00045 36.7 9.7 73 345-428 267-343 (401)
358 COG2804 PulE Type II secretory 74.3 2.7 5.9E-05 45.5 3.2 40 292-332 243-284 (500)
359 KOG0354 DEAD-box like helicase 74.2 15 0.00033 41.7 9.1 78 342-427 410-499 (746)
360 PRK14951 DNA polymerase III su 74.2 13 0.00028 41.6 8.5 41 268-323 13-56 (618)
361 COG1444 Predicted P-loop ATPas 74.0 8.8 0.00019 43.7 7.2 78 283-370 207-286 (758)
362 TIGR02640 gas_vesic_GvpN gas v 73.9 2.1 4.5E-05 42.2 2.1 25 298-322 14-38 (262)
363 PLN03187 meiotic recombination 73.9 27 0.00058 36.3 10.3 14 308-321 129-142 (344)
364 COG0466 Lon ATP-dependent Lon 73.7 7.9 0.00017 43.8 6.7 86 304-437 349-434 (782)
365 PRK07764 DNA polymerase III su 73.1 29 0.00063 40.2 11.3 43 268-325 12-57 (824)
366 COG0542 clpA ATP-binding subun 73.1 4.1 9E-05 46.5 4.4 14 307-320 523-536 (786)
367 PRK12724 flagellar biosynthesi 72.9 8.1 0.00018 41.3 6.3 17 306-322 224-240 (432)
368 COG1200 RecG RecG-like helicas 72.9 9.3 0.0002 42.9 6.9 84 344-433 472-564 (677)
369 PRK14712 conjugal transfer nic 72.9 8.2 0.00018 47.5 7.0 65 290-362 835-901 (1623)
370 TIGR03345 VI_ClpV1 type VI sec 72.9 5.6 0.00012 46.0 5.5 15 307-321 598-612 (852)
371 PRK14960 DNA polymerase III su 72.7 13 0.00029 41.9 8.2 40 268-322 12-54 (702)
372 PRK12422 chromosomal replicati 72.6 7.9 0.00017 41.5 6.2 15 306-320 142-156 (445)
373 cd00984 DnaB_C DnaB helicase C 72.5 8.4 0.00018 36.7 5.9 48 303-361 11-61 (242)
374 TIGR03743 SXT_TraD conjugative 72.4 4.7 0.0001 45.2 4.6 54 305-370 176-231 (634)
375 PRK11057 ATP-dependent DNA hel 72.4 14 0.00031 40.9 8.5 74 344-428 235-312 (607)
376 PF03796 DnaB_C: DnaB-like hel 72.2 7.8 0.00017 37.7 5.7 114 304-434 18-144 (259)
377 PRK13709 conjugal transfer nic 72.2 13 0.00027 46.4 8.5 66 289-362 966-1033(1747)
378 PRK14958 DNA polymerase III su 71.9 6.2 0.00013 43.0 5.3 40 268-322 13-55 (509)
379 PF12775 AAA_7: P-loop contain 71.6 2.4 5.3E-05 42.2 2.0 18 303-320 31-48 (272)
380 PRK10867 signal recognition pa 71.6 24 0.00052 37.8 9.6 16 307-322 102-117 (433)
381 PF05127 Helicase_RecD: Helica 71.4 0.38 8.1E-06 45.3 -3.6 101 309-432 1-102 (177)
382 PRK12323 DNA polymerase III su 71.1 17 0.00038 41.0 8.6 40 268-322 13-55 (700)
383 PRK05973 replicative DNA helic 71.1 5.1 0.00011 39.4 4.1 81 274-368 24-114 (237)
384 PRK05748 replicative DNA helic 70.9 15 0.00033 39.1 7.9 27 303-330 201-227 (448)
385 TIGR03754 conj_TOL_TraD conjug 70.7 6 0.00013 44.4 4.9 54 305-370 180-235 (643)
386 PRK08506 replicative DNA helic 70.4 8.5 0.00018 41.5 5.9 26 304-330 191-216 (472)
387 PRK14965 DNA polymerase III su 70.3 21 0.00045 39.5 9.1 40 268-322 13-55 (576)
388 PRK09694 helicase Cas3; Provis 70.3 28 0.0006 40.6 10.3 77 344-429 559-647 (878)
389 TIGR01970 DEAH_box_HrpB ATP-de 70.2 16 0.00034 42.3 8.3 73 346-427 210-286 (819)
390 CHL00095 clpC Clp protease ATP 70.0 4.8 0.0001 46.3 4.2 14 307-320 541-554 (821)
391 PRK11664 ATP-dependent RNA hel 69.9 17 0.00037 42.0 8.5 74 345-427 212-289 (812)
392 PRK14086 dnaA chromosomal repl 69.7 10 0.00022 42.4 6.4 14 307-320 316-329 (617)
393 PRK07004 replicative DNA helic 69.4 8.9 0.00019 41.2 5.8 27 303-330 211-237 (460)
394 PRK12608 transcription termina 69.4 10 0.00022 39.9 6.0 29 293-321 118-149 (380)
395 COG0470 HolB ATPase involved i 69.3 19 0.00041 35.5 7.8 19 304-322 22-41 (325)
396 cd01393 recA_like RecA is a b 69.3 14 0.00029 34.9 6.5 19 305-323 19-37 (226)
397 TIGR01389 recQ ATP-dependent D 69.3 19 0.00042 39.6 8.5 74 345-429 224-301 (591)
398 cd01363 Motor_domain Myosin an 69.1 4.6 0.0001 37.6 3.2 26 297-322 14-41 (186)
399 TIGR03600 phage_DnaB phage rep 69.0 19 0.00041 37.9 8.1 29 301-330 190-218 (421)
400 PRK12377 putative replication 68.4 9.2 0.0002 37.8 5.3 47 305-364 101-147 (248)
401 PRK09183 transposase/IS protei 68.3 6.1 0.00013 39.0 4.0 20 302-321 99-118 (259)
402 COG1132 MdlB ABC-type multidru 67.5 0.99 2.1E-05 49.1 -1.9 19 302-320 352-370 (567)
403 PRK09376 rho transcription ter 67.5 18 0.0004 38.4 7.5 49 267-320 130-184 (416)
404 KOG0989 Replication factor C, 67.4 24 0.00052 36.4 8.0 49 268-329 33-81 (346)
405 KOG0298 DEAD box-containing he 67.2 5.6 0.00012 47.3 3.9 126 305-434 374-526 (1394)
406 TIGR02012 tigrfam_recA protein 66.9 8.8 0.00019 39.4 4.9 44 304-359 54-97 (321)
407 COG0210 UvrD Superfamily I DNA 66.7 10 0.00022 42.1 5.8 71 290-370 2-72 (655)
408 TIGR02759 TraD_Ftype type IV c 66.6 4.4 9.5E-05 44.7 2.8 52 277-331 147-201 (566)
409 KOG0739 AAA+-type ATPase [Post 66.6 11 0.00025 38.7 5.5 50 269-326 131-185 (439)
410 cd03114 ArgK-like The function 66.4 34 0.00073 30.8 8.1 30 398-427 116-145 (148)
411 KOG1001 Helicase-like transcri 66.1 8.9 0.00019 43.3 5.2 113 308-434 155-268 (674)
412 PRK08006 replicative DNA helic 65.6 20 0.00044 38.6 7.6 26 304-330 223-248 (471)
413 PRK05707 DNA polymerase III su 65.3 13 0.00028 38.2 5.8 124 290-414 3-156 (328)
414 PRK04328 hypothetical protein; 65.1 5.5 0.00012 39.0 2.9 53 304-369 22-74 (249)
415 TIGR01587 cas3_core CRISPR-ass 64.6 28 0.0006 35.3 8.1 57 345-404 222-286 (358)
416 COG5008 PilU Tfp pilus assembl 64.4 5.2 0.00011 40.6 2.6 36 267-321 107-143 (375)
417 PRK00771 signal recognition pa 64.4 14 0.0003 39.6 6.0 17 306-322 96-112 (437)
418 TIGR00767 rho transcription te 64.4 12 0.00026 39.8 5.5 29 292-320 152-183 (415)
419 PHA03368 DNA packaging termina 64.3 23 0.00049 40.1 7.7 114 301-434 250-366 (738)
420 PLN00020 ribulose bisphosphate 64.1 5.7 0.00012 42.0 2.9 15 306-320 149-163 (413)
421 COG3972 Superfamily I DNA and 63.6 11 0.00023 41.2 4.9 147 278-437 151-312 (660)
422 PRK05563 DNA polymerase III su 63.5 15 0.00032 40.5 6.2 40 268-322 13-55 (559)
423 COG3267 ExeA Type II secretory 63.4 13 0.00029 37.2 5.2 86 269-369 15-104 (269)
424 PRK10787 DNA-binding ATP-depen 63.4 16 0.00035 42.0 6.7 32 402-436 401-432 (784)
425 PRK08840 replicative DNA helic 63.4 23 0.00051 38.1 7.6 28 302-330 214-241 (464)
426 PF04665 Pox_A32: Poxvirus A32 63.3 6 0.00013 39.1 2.8 23 307-330 15-37 (241)
427 PRK14948 DNA polymerase III su 63.2 36 0.00077 38.2 9.2 43 268-322 13-55 (620)
428 PRK08769 DNA polymerase III su 62.7 21 0.00046 36.6 6.7 127 288-415 2-164 (319)
429 KOG1806 DEAD box containing he 62.7 13 0.00029 43.5 5.7 72 287-368 735-806 (1320)
430 PRK09354 recA recombinase A; P 62.7 12 0.00026 38.9 5.0 43 305-359 60-102 (349)
431 TIGR02788 VirB11 P-type DNA tr 62.6 6 0.00013 40.0 2.8 20 302-321 141-160 (308)
432 cd03115 SRP The signal recogni 62.4 73 0.0016 28.7 9.7 14 308-321 3-16 (173)
433 cd00983 recA RecA is a bacter 62.1 9.3 0.0002 39.3 4.1 43 305-359 55-97 (325)
434 COG4626 Phage terminase-like p 62.0 15 0.00034 40.3 5.8 123 289-434 60-198 (546)
435 PRK08116 hypothetical protein; 61.9 17 0.00038 36.0 5.9 46 306-364 115-160 (268)
436 COG0467 RAD55 RecA-superfamily 60.9 7 0.00015 38.1 2.8 53 304-369 22-74 (260)
437 PRK09112 DNA polymerase III su 60.7 58 0.0012 33.8 9.6 15 307-321 47-61 (351)
438 KOG0921 Dosage compensation co 60.6 13 0.00028 43.2 5.0 114 300-434 388-507 (1282)
439 PF05505 Ebola_NP: Ebola nucle 60.4 2.6E+02 0.0057 30.9 14.4 28 61-88 444-471 (717)
440 PRK08533 flagellar accessory p 60.3 10 0.00022 36.8 3.8 53 303-368 22-74 (230)
441 PF01935 DUF87: Domain of unkn 60.0 9.2 0.0002 36.3 3.4 26 305-331 23-48 (229)
442 PRK13700 conjugal transfer pro 59.8 8.1 0.00018 43.8 3.4 70 277-360 157-228 (732)
443 PTZ00454 26S protease regulato 59.5 5.1 0.00011 42.2 1.7 53 266-321 140-195 (398)
444 cd01131 PilT Pilus retraction 59.5 4.7 0.0001 38.0 1.3 22 308-330 4-25 (198)
445 PF01078 Mg_chelatase: Magnesi 59.4 5.8 0.00012 38.3 1.9 18 304-321 21-38 (206)
446 TIGR00665 DnaB replicative DNA 59.3 20 0.00044 37.7 6.1 26 304-330 194-219 (434)
447 PRK04914 ATP-dependent helicas 59.1 72 0.0016 37.7 10.9 75 345-429 493-573 (956)
448 cd01370 KISc_KIP3_like Kinesin 58.8 10 0.00022 38.9 3.6 26 297-322 78-105 (338)
449 cd01368 KISc_KIF23_like Kinesi 58.7 8.6 0.00019 39.6 3.2 25 298-322 80-106 (345)
450 cd01376 KISc_KID_like Kinesin 58.6 9.3 0.0002 38.8 3.3 26 297-322 71-98 (319)
451 cd01369 KISc_KHC_KIF5 Kinesin 58.5 8.9 0.00019 38.9 3.2 26 297-322 67-94 (325)
452 PRK13767 ATP-dependent helicas 58.3 45 0.00098 38.8 9.2 78 346-429 285-367 (876)
453 KOG0745 Putative ATP-dependent 58.3 7.2 0.00016 41.9 2.5 27 303-331 224-250 (564)
454 PRK06731 flhF flagellar biosyn 58.2 34 0.00073 34.3 7.2 21 304-324 74-94 (270)
455 PTZ00361 26 proteosome regulat 58.0 5 0.00011 42.9 1.3 53 266-321 178-233 (438)
456 KOG1969 DNA replication checkp 58.0 30 0.00066 39.5 7.3 27 406-432 371-399 (877)
457 TIGR00595 priA primosomal prot 57.9 53 0.0012 35.8 9.2 65 358-431 271-341 (505)
458 COG1074 RecB ATP-dependent exo 57.9 13 0.00029 44.4 4.9 56 304-366 15-70 (1139)
459 COG0378 HypB Ni2+-binding GTPa 57.7 36 0.00078 32.8 6.8 13 308-320 16-28 (202)
460 COG1111 MPH1 ERCC4-like helica 56.9 95 0.0021 34.1 10.6 77 343-429 364-452 (542)
461 TIGR03689 pup_AAA proteasome A 56.9 5.9 0.00013 43.3 1.7 51 267-321 178-232 (512)
462 KOG0335 ATP-dependent RNA heli 56.8 1.4E+02 0.003 32.6 11.8 150 269-429 238-414 (482)
463 PHA03372 DNA packaging termina 56.8 55 0.0012 36.8 9.0 109 303-434 200-313 (668)
464 PF13479 AAA_24: AAA domain 56.6 8.5 0.00018 36.6 2.5 38 397-434 45-82 (213)
465 PF09439 SRPRB: Signal recogni 56.4 4.4 9.6E-05 38.2 0.6 20 305-324 3-22 (181)
466 PRK06321 replicative DNA helic 56.2 28 0.00061 37.6 6.6 25 305-330 226-250 (472)
467 cd01123 Rad51_DMC1_radA Rad51_ 55.8 20 0.00044 33.9 5.0 20 304-323 18-37 (235)
468 cd01373 KISc_KLP2_like Kinesin 55.8 9.4 0.0002 39.1 2.9 25 298-322 66-92 (337)
469 TIGR03878 thermo_KaiC_2 KaiC d 55.7 17 0.00038 35.7 4.6 18 304-321 35-52 (259)
470 cd01367 KISc_KIF2_like Kinesin 55.4 11 0.00024 38.3 3.3 27 297-323 75-103 (322)
471 KOG0058 Peptide exporter, ABC 55.4 5.6 0.00012 44.8 1.2 27 304-332 493-519 (716)
472 cd01365 KISc_KIF1A_KIF1B Kines 55.3 9.4 0.0002 39.3 2.8 25 298-322 80-106 (356)
473 TIGR02655 circ_KaiC circadian 55.1 10 0.00022 40.8 3.2 54 304-369 20-73 (484)
474 KOG1533 Predicted GTPase [Gene 55.0 14 0.0003 36.8 3.7 24 308-332 5-28 (290)
475 PF01580 FtsK_SpoIIIE: FtsK/Sp 55.0 7.8 0.00017 36.2 1.9 26 305-330 38-63 (205)
476 PLN03137 ATP-dependent DNA hel 54.9 39 0.00085 40.5 7.9 70 346-426 681-754 (1195)
477 PF13555 AAA_29: P-loop contai 54.7 7.6 0.00016 30.4 1.5 22 299-320 17-38 (62)
478 PF00004 AAA: ATPase family as 54.6 6.6 0.00014 33.0 1.3 13 308-320 1-13 (132)
479 PRK08699 DNA polymerase III su 54.3 83 0.0018 32.3 9.4 122 292-414 3-163 (325)
480 TIGR00382 clpX endopeptidase C 54.3 9.9 0.00021 40.4 2.8 18 305-322 116-133 (413)
481 PF03029 ATP_bind_1: Conserved 54.2 1.4 3E-05 43.1 -3.3 20 310-330 1-20 (238)
482 PHA03311 helicase-primase subu 53.9 19 0.00042 41.0 5.0 44 306-366 72-115 (828)
483 COG0606 Predicted ATPase with 53.7 8.5 0.00018 41.6 2.2 18 304-321 197-214 (490)
484 TIGR02238 recomb_DMC1 meiotic 53.2 43 0.00093 34.2 7.1 57 306-368 97-154 (313)
485 TIGR02880 cbbX_cfxQ probable R 53.1 6 0.00013 39.6 0.9 19 304-322 57-75 (284)
486 PF13207 AAA_17: AAA domain; P 52.8 6.8 0.00015 32.9 1.1 13 308-320 2-14 (121)
487 PHA02653 RNA helicase NPH-II; 52.8 40 0.00087 38.2 7.4 72 345-425 395-469 (675)
488 PF13671 AAA_33: AAA domain; P 52.7 6.8 0.00015 33.8 1.1 13 308-320 2-14 (143)
489 TIGR00678 holB DNA polymerase 52.5 43 0.00093 30.7 6.5 16 306-321 15-30 (188)
490 KOG0330 ATP-dependent RNA heli 52.3 41 0.00089 35.8 6.8 70 345-425 300-373 (476)
491 KOG1015 Transcription regulato 52.2 50 0.0011 39.0 7.8 55 307-370 698-752 (1567)
492 TIGR01242 26Sp45 26S proteasom 52.1 7.6 0.00016 40.0 1.5 53 266-321 117-172 (364)
493 PRK13531 regulatory ATPase Rav 52.1 12 0.00027 40.6 3.1 21 301-321 35-55 (498)
494 cd01372 KISc_KIF4 Kinesin moto 52.0 13 0.00027 38.0 3.1 25 298-322 65-91 (341)
495 PF13481 AAA_25: AAA domain; P 52.0 19 0.00042 32.8 4.0 69 298-370 24-94 (193)
496 PHA00012 I assembly protein 51.8 27 0.00058 36.4 5.3 23 308-330 4-26 (361)
497 cd01375 KISc_KIF9_like Kinesin 51.4 12 0.00025 38.4 2.7 25 298-322 72-98 (334)
498 TIGR02655 circ_KaiC circadian 51.4 15 0.00032 39.6 3.6 53 304-369 262-314 (484)
499 PF13238 AAA_18: AAA domain; P 51.3 7.4 0.00016 32.6 1.1 14 308-321 1-14 (129)
500 KOG0239 Kinesin (KAR3 subfamil 51.3 53 0.0011 37.2 8.0 27 299-325 385-413 (670)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=312.22 Aligned_cols=169 Identities=40% Similarity=0.631 Sum_probs=155.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
+...|.+++|+++++.+|+..||..|||||.++||.+++|+|++++|.|||||||+|++|++.++.... .......+
T Consensus 89 ~~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~---~~~~~~~~ 165 (519)
T KOG0331|consen 89 SSAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ---GKLSRGDG 165 (519)
T ss_pred cchhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc---ccccCCCC
Confidence 345899999999999999999999999999999999999999999999999999999999999998631 23455679
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
|++|||+||||||.||...+..++. ...++++|+|||.+...|+..++++++|+|||||||+++|+++.++|.+|.|||
T Consensus 166 P~vLVL~PTRELA~QV~~~~~~~~~-~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylV 244 (519)
T KOG0331|consen 166 PIVLVLAPTRELAVQVQAEAREFGK-SLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLV 244 (519)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHcC-CCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEE
Confidence 9999999999999999999999998 467899999999999999999999999999999999999999999999999999
Q ss_pred EeCCc-----cchhhhcc
Q 013623 426 RTASL-----NIESHFSY 438 (439)
Q Consensus 426 lDEAD-----~fe~~~~~ 438 (439)
||||| .|+++++.
T Consensus 245 LDEADrMldmGFe~qI~~ 262 (519)
T KOG0331|consen 245 LDEADRMLDMGFEPQIRK 262 (519)
T ss_pred eccHHhhhccccHHHHHH
Confidence 99997 45555544
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=302.42 Aligned_cols=158 Identities=32% Similarity=0.485 Sum_probs=149.5
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
+..+|.+||+++++++++.+.||+.||+||+++||.++.|+||++.|+||||||.+|+||++++++.++ ..
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---------~~ 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP---------KL 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC---------CC
Confidence 468999999999999999999999999999999999999999999999999999999999999998753 44
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHH-hCCCCCCCcccE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK-EGILQLINLRWY 424 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~-~~~l~L~~Lr~L 424 (439)
|+||||+||||||.||..+++.|+. +.+++++++.||.....|...+.+.+||||||||||++++. .+.+.+..|+||
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~-~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGS-GIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhcc-ccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 9999999999999999999999987 58999999999999999999999999999999999999998 588999999999
Q ss_pred EEeCCccch
Q 013623 425 ARTASLNIE 433 (439)
Q Consensus 425 VlDEAD~fe 433 (439)
|+||||.|-
T Consensus 209 VlDEADrlL 217 (476)
T KOG0330|consen 209 VLDEADRLL 217 (476)
T ss_pred hhchHHhhh
Confidence 999998654
No 3
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-34 Score=294.96 Aligned_cols=172 Identities=31% Similarity=0.527 Sum_probs=151.3
Q ss_pred ccccccccccCCCHHHHHHH-HHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCC
Q 013623 264 FFSRKSFKELGCSDYMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (439)
Q Consensus 264 ~~s~~sF~elgL~~~Ll~aL-~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~ 342 (439)
.+....|.+|||++.++..| ..|+|..||.||.++||.+|.|+|++|.|+||||||+||++|+++.+...+. .--+
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~---ki~R 208 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP---KIQR 208 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc---cccc
Confidence 34457899999999999999 4589999999999999999999999999999999999999999999976531 1224
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh-CCCCCCCc
Q 013623 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINL 421 (439)
Q Consensus 343 ~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~-~~l~L~~L 421 (439)
..|+.||||+||||||.|+|+++++|.+...-|..++++||........+|++|++|||+|||||+|+|++ ..+.+++|
T Consensus 209 s~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 209 SDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred cCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 67999999999999999999999999985455777888999999888889999999999999999999987 56789999
Q ss_pred ccEEEeCCc-----cchhhhcc
Q 013623 422 RWYARTASL-----NIESHFSY 438 (439)
Q Consensus 422 r~LVlDEAD-----~fe~~~~~ 438 (439)
+|||+||+| .|+.+++.
T Consensus 289 RwlVlDEaDrlleLGfekdit~ 310 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQ 310 (708)
T ss_pred eEEEecchhHHHhccchhhHHH
Confidence 999999998 45555543
No 4
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=296.31 Aligned_cols=226 Identities=26% Similarity=0.400 Sum_probs=198.9
Q ss_pred ccccccccccCccCCCCCcccCCCCCCCCccccccccCCCCccCcccCCCCCcc--ccccccccCCCHHHHHHHHHCCCC
Q 013623 212 KNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFF--SRKSFKELGCSDYMIESLKRQNFL 289 (439)
Q Consensus 212 ~~~~d~~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~--s~~sF~elgL~~~Ll~aL~~~gf~ 289 (439)
.+.-....+..+.+.+.+...+.|+++..+.....+..+....++....+++.. ++++|.++.++..+++.|++.|+.
T Consensus 112 ~k~LmsV~ElakGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~ 191 (610)
T KOG0341|consen 112 GKALMSVAELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIV 191 (610)
T ss_pred CccceeHHHHhCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCC
Confidence 344456667789999999999999999999888877766655566666666655 679999999999999999999999
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
+|||||.|.||.+|+|||++.+|.||||||+.|+||++-..++++. ..+.....||.+|||||+||||.|+++.+..++
T Consensus 192 ~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~-~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM-MLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred CCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh-cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988877753 467888999999999999999999999887775
Q ss_pred c----C-CCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc-----cchhhhcc
Q 013623 370 K----C-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASL-----NIESHFSY 438 (439)
Q Consensus 370 k----~-~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD-----~fe~~~~~ 438 (439)
. . ...+++.++.||.+..+|+..++.|+||+|+|||||.++|.++.++|.-|+||++|||| .|+++++.
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~ 349 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRT 349 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHH
Confidence 4 2 24589999999999999999999999999999999999999999999999999999997 56666654
No 5
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=291.02 Aligned_cols=158 Identities=28% Similarity=0.438 Sum_probs=148.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|.+|+|+-.|++++..+||..|||||.++||..|.|+|++.||.||||||.||++|+|.+++..+. .....+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk------~~~~TR 254 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK------KVAATR 254 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc------cCccee
Confidence 58999999999999999999999999999999999999999999999999999999999999987532 256789
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-CCCCCCcccEEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRWYAR 426 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~LVl 426 (439)
+||||||||||.|++++.++|++| .+|.++++.||.+...|...|+..|||+|+|||||+++|++. .++|+++-.|||
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqF-t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQF-TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhh-ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 999999999999999999999998 679999999999999999999999999999999999999875 679999999999
Q ss_pred eCCccc
Q 013623 427 TASLNI 432 (439)
Q Consensus 427 DEAD~f 432 (439)
||||.+
T Consensus 334 DEADRM 339 (691)
T KOG0338|consen 334 DEADRM 339 (691)
T ss_pred chHHHH
Confidence 999843
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-33 Score=294.73 Aligned_cols=159 Identities=36% Similarity=0.543 Sum_probs=144.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
..|++|+|+++++++|.++||..|||||.++||.++.|+|++++|+||||||+||++|+|+++.... ....+.
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-------~~~~~~ 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-------ERKYVS 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc-------ccCCCc
Confidence 5799999999999999999999999999999999999999999999999999999999999976420 011112
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||||||.||++.+..+.++..++++++++||.+...|...+..++||||||||||+++++++.+++..+++||+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 99999999999999999999998532799999999999999999999899999999999999999999999999999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+-
T Consensus 182 EADrmL 187 (513)
T COG0513 182 EADRML 187 (513)
T ss_pred cHhhhh
Confidence 998543
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=5.1e-32 Score=281.24 Aligned_cols=164 Identities=27% Similarity=0.433 Sum_probs=148.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..||++|.++||.++.|+|++++||||||||+||++|+++.+...... ......++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~--~~~~~~~~ 84 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP--EDRKVNQP 84 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc--cccccCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999764311 11223578
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||||||.|+++++..+.+. .++++.+++||.....+...+..++||||+||++|++++.++.+.++++++|||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQA-TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 9999999999999999999999874 689999999999998888888889999999999999999999999999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 164 DEad~l~ 170 (423)
T PRK04837 164 DEADRMF 170 (423)
T ss_pred ecHHHHh
Confidence 9999754
No 8
>PTZ00110 helicase; Provisional
Probab=99.97 E-value=7.2e-32 Score=289.49 Aligned_cols=162 Identities=31% Similarity=0.553 Sum_probs=148.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..||+||.++||.+++|+|+|++||||||||++|++|++.++.... ......+|
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~----~~~~~~gp 204 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQP----LLRYGDGP 204 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcc----cccCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999886542 11224579
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||||||.|+.+.++++... ..+++.+++|+.....+...+..+++|||+||++|++++.++...|.++++|||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGAS-SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcc-cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 9999999999999999999999873 679999999999999998889999999999999999999999999999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 284 DEAd~ml 290 (545)
T PTZ00110 284 DEADRML 290 (545)
T ss_pred ehHHhhh
Confidence 9999654
No 9
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.5e-31 Score=277.49 Aligned_cols=170 Identities=28% Similarity=0.465 Sum_probs=147.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC-CcEEEEcCCCCCcceeehhHHHHHHHHHHh--hccCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEEL--QGLSKSTS 343 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~--~~~~~~~~ 343 (439)
...|.+|+|+.+++++|..+||.+||+||..+||+++.| .||++.|.|||||||||-+|+++.+.+... +.......
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 457999999999999999999999999999999999999 799999999999999999999996654211 01111223
Q ss_pred CCC--eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC---CC
Q 013623 344 GSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL---QL 418 (439)
Q Consensus 344 ~gp--~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l---~L 418 (439)
.++ .+||++||||||.||.+.+..++.+ .++++..++||.....|.+.|++.+||+||||||||.++.++.. ++
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 344 4999999999999999999999985 89999999999999999999999999999999999999988644 67
Q ss_pred CCcccEEEeCCccchh--hhc
Q 013623 419 INLRWYARTASLNIES--HFS 437 (439)
Q Consensus 419 ~~Lr~LVlDEAD~fe~--~~~ 437 (439)
.+|+||||||+|.+.+ ||.
T Consensus 339 k~vkcLVlDEaDRmvekghF~ 359 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFE 359 (731)
T ss_pred hhceEEEEccHHHHhhhccHH
Confidence 8899999999997763 554
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.97 E-value=5.1e-31 Score=281.22 Aligned_cols=164 Identities=30% Similarity=0.493 Sum_probs=148.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|++.++...... ......++
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~--~~~~~~~~ 197 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG--HPSEQRNP 197 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc--cccccCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999988653211 11224689
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||||||.|+.+.++.+.+ ..++++.+++||.....+...+..+++|||+|||+|.+++.++.+.++++++|||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~-~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGK-GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhC-CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 999999999999999999999987 4678999999999999898888899999999999999999999999999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 277 DEad~ml 283 (518)
T PLN00206 277 DEVDCML 283 (518)
T ss_pred ecHHHHh
Confidence 9999654
No 11
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.2e-31 Score=274.11 Aligned_cols=163 Identities=28% Similarity=0.509 Sum_probs=153.3
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCC
Q 013623 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (439)
Q Consensus 265 ~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~ 344 (439)
.+.++|+++|+++.|+.++++..|..|||||.+++|..++|+||+.+|.||||||.||+.|++.++..++ ......
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~----eL~~g~ 295 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP----ELKPGE 295 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh----hhcCCC
Confidence 3678999999999999999999999999999999999999999999999999999999999999997663 223378
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccE
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWY 424 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~L 424 (439)
+|.+||||||||||.||+.+|++|++ ..+++++++|||.+..+|...|..+|.|||||||||+++++.+..++.++.||
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K-~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGK-AYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhh-hccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 99999999999999999999999988 58999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCccc
Q 013623 425 ARTASLNI 432 (439)
Q Consensus 425 VlDEAD~f 432 (439)
||||||.+
T Consensus 375 V~DEadrm 382 (731)
T KOG0339|consen 375 VLDEADRM 382 (731)
T ss_pred EEechhhh
Confidence 99999743
No 12
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.6e-31 Score=269.05 Aligned_cols=168 Identities=26% Similarity=0.481 Sum_probs=144.3
Q ss_pred ccccccCC--CHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 268 KSFKELGC--SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 268 ~sF~elgL--~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
.+|++++. +++|+++|.++||..+||+|..+||.+++++||++.|+||||||+||++|++..+...... .....
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~----~~~~~ 79 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK----TPPGQ 79 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccC----CCccc
Confidence 56888864 5999999999999999999999999999999999999999999999999999999654321 11224
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCC--CCCCCcc
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGI--LQLINLR 422 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~--l~L~~Lr 422 (439)
.-+|||+||||||.||.+++..+..+...+.+.+++||....+.+..++ ++++|+|||||||.+++++.. +++..|.
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 6799999999999999999999988657899999999999988887774 679999999999999999854 4556999
Q ss_pred cEEEeCCcc-----chhhhccC
Q 013623 423 WYARTASLN-----IESHFSYI 439 (439)
Q Consensus 423 ~LVlDEAD~-----fe~~~~~i 439 (439)
+|||||||. |+.++++|
T Consensus 160 ~LVLDEADrLldmgFe~~~n~I 181 (567)
T KOG0345|consen 160 ILVLDEADRLLDMGFEASVNTI 181 (567)
T ss_pred eEEecchHhHhcccHHHHHHHH
Confidence 999999984 45555443
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.97 E-value=1.2e-30 Score=274.07 Aligned_cols=162 Identities=35% Similarity=0.541 Sum_probs=146.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
++|++|+|++.++++|.++||..||++|.++||.++.|+|++++||||||||+||++|+++.+...... ......++
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~ 77 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVR 77 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCce
Confidence 379999999999999999999999999999999999999999999999999999999999998654211 11123568
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||+|||.|+.+.++.+.++ .++++..++|+.....+...+..+++|||+||++|++++..+.+.++.+++||||
T Consensus 78 aLil~PtreLa~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 78 ALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEee
Confidence 999999999999999999999874 7799999999999998888888889999999999999999999999999999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 157 Eah~ll 162 (456)
T PRK10590 157 EADRML 162 (456)
T ss_pred cHHHHh
Confidence 999764
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=6.4e-31 Score=270.39 Aligned_cols=163 Identities=29% Similarity=0.471 Sum_probs=149.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
....|+++.|++..++++.++||..+|++|+.+||.+|.|+|+++.|.||||||+|||+|+++.+.... +...++
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~-----~~~r~~ 154 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK-----FKPRNG 154 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcc-----cCCCCC
Confidence 346899999999999999999999999999999999999999999999999999999999999998764 334578
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-CCCCCCcccE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRWY 424 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~L 424 (439)
..+||||||||||.|++.++++|.+++..+.+.++.||........++.++|+|||||||||+++|++. .+.+.++++|
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 899999999999999999999999986689999999999998888889889999999999999999874 4566778999
Q ss_pred EEeCCccch
Q 013623 425 ARTASLNIE 433 (439)
Q Consensus 425 VlDEAD~fe 433 (439)
|+||||.+.
T Consensus 235 vlDEADrlL 243 (543)
T KOG0342|consen 235 VLDEADRLL 243 (543)
T ss_pred Eeecchhhh
Confidence 999998543
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.97 E-value=2e-30 Score=272.05 Aligned_cols=157 Identities=27% Similarity=0.452 Sum_probs=145.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|++++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||+||++|+++++... ...++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~---------~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK---------RFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc---------cCCce
Confidence 579999999999999999999999999999999999999999999999999999999999998532 23578
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||+|||.|+.+.++.+.....++++..++|+.+...+...+..+++|+|+|||+|.+++.++.+.+.++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 99999999999999999999987545789999999999999999999999999999999999999999999999999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 155 Ead~~l 160 (460)
T PRK11776 155 EADRML 160 (460)
T ss_pred CHHHHh
Confidence 999643
No 16
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.2e-31 Score=267.47 Aligned_cols=161 Identities=28% Similarity=0.471 Sum_probs=144.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
++|++|||+++|++++.++||.+||-||+.+||.+|.|+|++..|.||||||+||++|+++.+...... .....+|.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t---~~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT---NDGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhc---ccccccce
Confidence 689999999999999999999999999999999999999999999999999999999999999876432 24467899
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCC-CCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCC-CCCCCcccEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCG-VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRWYA 425 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~-~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~-l~L~~Lr~LV 425 (439)
++||+||||||+|++.++.+|..+. ..+++.-+..+.+...+...|...+||+|+||++++.++..+. ..+..|.+||
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 9999999999999999999998753 3677777776776666667777889999999999999999987 6789999999
Q ss_pred EeCCcc
Q 013623 426 RTASLN 431 (439)
Q Consensus 426 lDEAD~ 431 (439)
+||||.
T Consensus 176 vDEADL 181 (569)
T KOG0346|consen 176 VDEADL 181 (569)
T ss_pred echhhh
Confidence 999984
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=6.8e-30 Score=265.83 Aligned_cols=159 Identities=34% Similarity=0.564 Sum_probs=146.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeE
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~a 348 (439)
+|++|+|++.++++|.++||..||++|.++||.++.|+|++++||||+|||+||++|+++++.... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~-----~~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP-----RRKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCceE
Confidence 699999999999999999999999999999999999999999999999999999999999986532 122346799
Q ss_pred EEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeC
Q 013623 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTA 428 (439)
Q Consensus 349 LILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDE 428 (439)
|||+||+|||.|+++.+..+..+ .++.+..++|+.....+...+..+++|||+|||+|++++.++.+.+..+++|||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHcc-CCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999884 67999999999999988888888899999999999999999999999999999999
Q ss_pred Cccch
Q 013623 429 SLNIE 433 (439)
Q Consensus 429 AD~fe 433 (439)
||.+.
T Consensus 156 ah~~l 160 (434)
T PRK11192 156 ADRML 160 (434)
T ss_pred HHHHh
Confidence 99654
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=4.5e-30 Score=277.01 Aligned_cols=163 Identities=32% Similarity=0.476 Sum_probs=145.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|++|+|++.|+++|.++||..|||||.++||.++.|+|++++||||||||+||++|+++++..... ........++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~--~~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPA--LADRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--ccccccCCce
Confidence 46999999999999999999999999999999999999999999999999999999999999865321 1111234689
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-CCCCCCcccEEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRWYAR 426 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~LVl 426 (439)
+|||+||+|||.|+++.+..++.. .++++.+++|+.....+...+..+++|||+||++|++++.++ .+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~-~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGAD-LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 999999999999999999999874 789999999999999988888888999999999999999875 578899999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 166 DEAh~ll 172 (572)
T PRK04537 166 DEADRMF 172 (572)
T ss_pred cCHHHHh
Confidence 9999654
No 19
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=271.33 Aligned_cols=168 Identities=32% Similarity=0.508 Sum_probs=152.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCC-CCC
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSP 346 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~-~gp 346 (439)
.+|.+..+.+.++.++...+|..|||||..+||.+..|+|+++||+||||||.|||+|++.+++............ ..|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999998875433222222 479
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||||||.|++..++++.- ...++++.+||+.+...|.+.+.++|||+|+|||||.++++.+.+.|.+|+||||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~-~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSY-LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcc-cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 999999999999999999999975 5789999999999999999999999999999999999999999999999999999
Q ss_pred eCCccchhhh
Q 013623 427 TASLNIESHF 436 (439)
Q Consensus 427 DEAD~fe~~~ 436 (439)
||||.+.+.|
T Consensus 233 DEADrMlD~m 242 (482)
T KOG0335|consen 233 DEADRMLDEM 242 (482)
T ss_pred cchHHhhhhc
Confidence 9998665543
No 20
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=267.41 Aligned_cols=191 Identities=25% Similarity=0.390 Sum_probs=167.1
Q ss_pred CcccCCCCCCCCccccccccCCCCccCcccCCCCCccccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcE
Q 013623 229 TKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308 (439)
Q Consensus 229 ~~~~~~w~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDv 308 (439)
+...+.|+-...-.++++.+...|.+ ..+|+|.+|+.++++.+.+.||..|||||.++||..++.+|+
T Consensus 218 Em~~rdwri~redynis~kg~~lpnp------------lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~ 285 (673)
T KOG0333|consen 218 EMTERDWRIFREDYNISIKGGRLPNP------------LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDP 285 (673)
T ss_pred hcCCccceeeecceeeeecCCCCCcc------------ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCe
Confidence 66778887655555566666555554 468999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHH
Q 013623 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (439)
Q Consensus 309 li~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~ 388 (439)
|+.|.||||||+||++|++..|...+-.........+|+++||+||||||+||...-.++++ +.+++++.++||.+..+
T Consensus 286 igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~-~lg~r~vsvigg~s~EE 364 (673)
T KOG0333|consen 286 IGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGK-PLGIRTVSVIGGLSFEE 364 (673)
T ss_pred eeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcc-cccceEEEEecccchhh
Confidence 99999999999999999999986643222223446799999999999999999999999998 57899999999999999
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 389 q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
|-..+..||+|+|||||+|++.|.+..+-|++|.|||+||||.+
T Consensus 365 q~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrm 408 (673)
T KOG0333|consen 365 QGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRM 408 (673)
T ss_pred hhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhh
Confidence 98888999999999999999999999999999999999999743
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=7e-30 Score=278.04 Aligned_cols=157 Identities=32% Similarity=0.526 Sum_probs=146.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
++|.+|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||+||++|+++.+... ...++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---------~~~~~ 76 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---------LKAPQ 76 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---------cCCCe
Confidence 579999999999999999999999999999999999999999999999999999999999988543 34689
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||+|||.|+++.+..+.+...++.+..++|+.....+...+..+++|||+||++|++++.++.+.+++|++||||
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 99999999999999999999987545799999999999999999998899999999999999999999999999999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 157 EAd~ml 162 (629)
T PRK11634 157 EADEML 162 (629)
T ss_pred cHHHHh
Confidence 999643
No 22
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.9e-30 Score=256.22 Aligned_cols=156 Identities=30% Similarity=0.496 Sum_probs=145.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
.+.|..|||++|+.+.|+.+|+..|||||..+||.||.|+|++.+|.||||||++|.+|+|+++.++ ..+.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed---------P~gi 76 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED---------PYGI 76 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC---------CCcc
Confidence 4679999999999999999999999999999999999999999999999999999999999999776 4688
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC----CCCCCCcc
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLR 422 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~----~l~L~~Lr 422 (439)
.++||+||||||.|+.++|..+++ ..++++.+++||...-.|...|...+||+|+||||+.+++..+ ...+.+++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk-~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGK-LLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcc-cccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 999999999999999999999998 4889999999999999999999999999999999999999875 23578999
Q ss_pred cEEEeCCccc
Q 013623 423 WYARTASLNI 432 (439)
Q Consensus 423 ~LVlDEAD~f 432 (439)
|+|+||||.+
T Consensus 156 flVlDEADrv 165 (442)
T KOG0340|consen 156 FLVLDEADRV 165 (442)
T ss_pred eEEecchhhh
Confidence 9999999844
No 23
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.1e-29 Score=277.02 Aligned_cols=163 Identities=30% Similarity=0.524 Sum_probs=147.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
+.++|.+.|++..|+..|+++||.+||+||.+|||+|++|+|||++|.||||||++|+||++.++..++ +.....|
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr----~~~~gdG 438 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR----PLEEGDG 438 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC----ChhhCCC
Confidence 568999999999999999999999999999999999999999999999999999999999997775543 3344569
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC---CCCCcc
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL---QLINLR 422 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l---~L~~Lr 422 (439)
|.+||++||||||.||++.+++|++. .+++++++||+.....|+..+++++.|+|+||||+++++-.+.. +|.++.
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999999995 89999999999999999999999999999999999999976543 566666
Q ss_pred cEEEeCCccch
Q 013623 423 WYARTASLNIE 433 (439)
Q Consensus 423 ~LVlDEAD~fe 433 (439)
|||+||||.+-
T Consensus 518 ~lv~deaDrmf 528 (997)
T KOG0334|consen 518 YLVLDEADRMF 528 (997)
T ss_pred eeeechhhhhh
Confidence 99999998543
No 24
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.5e-30 Score=252.40 Aligned_cols=160 Identities=28% Similarity=0.498 Sum_probs=150.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
-..|+++.|..+++..+.++||++|+|||.++||.+|.|+|++..|.+|+|||.||++|+|+.+... ....
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~---------~~~I 154 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK---------KNVI 154 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc---------ccce
Confidence 3689999999999999999999999999999999999999999999999999999999999998554 4578
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
+++||+||||||.|+.+.|+.+++ +.++++++.+||++....+.++.+.+|++||||||+++++.++.-.++.+..||+
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lsk-h~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~ 233 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSK-HLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVM 233 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhc-ccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEe
Confidence 999999999999999999999999 5889999999999999999999999999999999999999999999999999999
Q ss_pred eCCccchh-hh
Q 013623 427 TASLNIES-HF 436 (439)
Q Consensus 427 DEAD~fe~-~~ 436 (439)
||||.+.. +|
T Consensus 234 DEADKlLs~~F 244 (459)
T KOG0326|consen 234 DEADKLLSVDF 244 (459)
T ss_pred chhhhhhchhh
Confidence 99997653 44
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.5e-30 Score=257.32 Aligned_cols=167 Identities=30% Similarity=0.534 Sum_probs=150.4
Q ss_pred ccccccc-CCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 267 RKSFKEL-GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 267 ~~sF~el-gL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
..+|++. ...+++++.+++.||.+|||||+||||.+|+|+|+++.|+||+|||++||+|-+.++..+... .....+
T Consensus 218 ~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~---~~qr~~ 294 (629)
T KOG0336|consen 218 VCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR---REQRNG 294 (629)
T ss_pred cCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh---hhccCC
Confidence 4678875 578999999999999999999999999999999999999999999999999988877655322 235679
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
|.+|+|+||||||.|+.-.+.++.- .+++.+|++|+.+..+|++.++.+++|+|+|||+|.++...+.++|..+.|||
T Consensus 295 p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 9999999999999999999988864 67999999999999999999999999999999999999999999999999999
Q ss_pred EeCCc-----cchhhhcc
Q 013623 426 RTASL-----NIESHFSY 438 (439)
Q Consensus 426 lDEAD-----~fe~~~~~ 438 (439)
||||| .||.+|+.
T Consensus 373 lDEADrMLDMgFEpqIrk 390 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRK 390 (629)
T ss_pred ecchhhhhcccccHHHHH
Confidence 99997 56666654
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=1.4e-28 Score=259.42 Aligned_cols=164 Identities=27% Similarity=0.424 Sum_probs=145.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|.+++|++.|+++|.++||..||++|.++||.++.|+|++++||||||||+||++|+++.+...... .......++
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~--~~~~~~~~~ 164 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP--KERYMGEPR 164 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc--cccccCCce
Confidence 579999999999999999999999999999999999999999999999999999999999998754211 011123689
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
+|||+||+|||.|+++.++.|.+. .++++..++||.....+...+. ..++|||+||++|++++.++.+.|+++++|||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999999999999999999999874 6789999999998888777764 46999999999999999999999999999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||||.+.+
T Consensus 244 DEah~l~~ 251 (475)
T PRK01297 244 DEADRMLD 251 (475)
T ss_pred chHHHHHh
Confidence 99997753
No 27
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.96 E-value=7.3e-29 Score=257.68 Aligned_cols=159 Identities=29% Similarity=0.458 Sum_probs=146.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
++.|++|.|+..++++|++.+|..||.||.++||..|.|+||++.|.|||||||||++|+|+++... .+....|-
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-----kWs~~DGl 142 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-----KWSPTDGL 142 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-----CCCCCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999875 46667889
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-CCCCCCcccEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRWYA 425 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~LV 425 (439)
-||||.||||||.|++.++.+++++ .++...+++||.......+++. +++|||||||||+.+|.+. .++..++++||
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~-h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKH-HDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhc-cccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 9999999999999999999999995 7899999999999888777765 4999999999999999875 56889999999
Q ss_pred EeCCccc
Q 013623 426 RTASLNI 432 (439)
Q Consensus 426 lDEAD~f 432 (439)
|||||.+
T Consensus 221 LDEADR~ 227 (758)
T KOG0343|consen 221 LDEADRM 227 (758)
T ss_pred eccHHHH
Confidence 9999854
No 28
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-28 Score=239.03 Aligned_cols=158 Identities=26% Similarity=0.415 Sum_probs=148.3
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
...+|+++||.++++++++..||++|+.||+.|||.|++|+||+++|++|+|||.+|.+.+|+.+.-. .+.
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---------~r~ 95 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---------VRE 95 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc---------cce
Confidence 45799999999999999999999999999999999999999999999999999999999999987443 356
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
.++|||.||||||.|+.+++..|+. +.++.+..+.||.+..+.+..+..|+|++.+||||++++++++.+....+++||
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~-~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGD-YMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcc-cccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 7999999999999999999999988 488999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccch
Q 013623 426 RTASLNIE 433 (439)
Q Consensus 426 lDEAD~fe 433 (439)
|||||.+.
T Consensus 175 LDEaDemL 182 (400)
T KOG0328|consen 175 LDEADEML 182 (400)
T ss_pred eccHHHHH
Confidence 99998543
No 29
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=1.1e-27 Score=245.38 Aligned_cols=156 Identities=26% Similarity=0.456 Sum_probs=143.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|++++|++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+... ..+++
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---------~~~~~ 98 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---------LNACQ 98 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---------CCCce
Confidence 689999999999999999999999999999999999999999999999999999999999887432 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||++|+.|+.+.+..++.. ..+.+..++|+.....+...+..+++|+|+||++|.+++.++.+.++++++||+|
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViD 177 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDY-LKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILD 177 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhh-cCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEe
Confidence 999999999999999999999863 6778888899998888888888889999999999999999988899999999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 178 Eah~~~ 183 (401)
T PTZ00424 178 EADEML 183 (401)
T ss_pred cHHHHH
Confidence 999754
No 30
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=239.19 Aligned_cols=160 Identities=26% Similarity=0.411 Sum_probs=137.2
Q ss_pred ccccccCCCHHH----------HHHHHHCCCCCCCHHHHHHhhhHh---------cCCcEEEEcCCCCCcceeehhHHHH
Q 013623 268 KSFKELGCSDYM----------IESLKRQNFLRPSQIQAMAFPPVV---------EGKSCILADQSGSGKTLAYLLPVIQ 328 (439)
Q Consensus 268 ~sF~elgL~~~L----------l~aL~~~gf~~pTpIQ~~aIP~iL---------sGrDvli~ApTGSGKTlaylLPiL~ 328 (439)
.-|..+++++.+ .++|.++++.+..|+|.+.+|.+| .++||+|.||||||||+||.+||++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 456666666544 455999999999999999999986 2589999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcC-----CCcEEEEC
Q 013623 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-----GVDVLIAT 403 (439)
Q Consensus 329 ~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~-----g~dILVaT 403 (439)
.+.... .+.-|||||+||++|+.|++++|..++. +.++.++.+.|..+.......|.. .+||||+|
T Consensus 207 ~L~~R~--------v~~LRavVivPtr~L~~QV~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaT 277 (620)
T KOG0350|consen 207 LLSSRP--------VKRLRAVVIVPTRELALQVYDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVAT 277 (620)
T ss_pred HHccCC--------ccceEEEEEeeHHHHHHHHHHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcC
Confidence 996543 3457999999999999999999999987 688999999999988877776643 24999999
Q ss_pred hHHHHHHHH-hCCCCCCCcccEEEeCCccchhhh
Q 013623 404 PGRFMFLIK-EGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 404 PgrLldlL~-~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
||||+++|+ .+.++|++|+||||||||.+.++.
T Consensus 278 PGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs 311 (620)
T KOG0350|consen 278 PGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS 311 (620)
T ss_pred chHHHHhccCCCCcchhhceEEEechHHHHHHHH
Confidence 999999999 578999999999999999877643
No 31
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.94 E-value=6.3e-26 Score=211.21 Aligned_cols=156 Identities=34% Similarity=0.610 Sum_probs=142.4
Q ss_pred ccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEE
Q 013623 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (439)
Q Consensus 270 F~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aL 349 (439)
|.++++++.+.+.|.++||..|+++|.++|+.+++|+|+++++|||+|||++|++|+++.+.... ...++++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~vi 73 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQAL 73 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEE
Confidence 78999999999999999999999999999999999999999999999999999999999987642 13578999
Q ss_pred EEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCC
Q 013623 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTAS 429 (439)
Q Consensus 350 ILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEA 429 (439)
|++||++|+.|+...++.+... .++.+..++|+.........+..+++|+|+||++|.++++++...+..++++|+||+
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 9999999999999999998774 678899999999887777777778999999999999999998888999999999999
Q ss_pred ccch
Q 013623 430 LNIE 433 (439)
Q Consensus 430 D~fe 433 (439)
|.+.
T Consensus 153 h~~~ 156 (203)
T cd00268 153 DRML 156 (203)
T ss_pred HHhh
Confidence 9865
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=5.5e-27 Score=237.83 Aligned_cols=157 Identities=31% Similarity=0.527 Sum_probs=147.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
-.|+.+||+..+++++.+.||..|||||..+||.+|.|+|++..|.||||||.||++|+++++.... ..+.+
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--------~~g~R 92 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--------QTGLR 92 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--------ccccc
Confidence 3699999999999999999999999999999999999999999999999999999999999996642 46789
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
++|+.||||||.|+.++++.+++ +.++++.+++|+.+..+|...+..++||||||||+++.+.-+-.+.|+.|.|||+|
T Consensus 93 alilsptreLa~qtlkvvkdlgr-gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGR-GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcc-ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 99999999999999999999999 58999999999999999999999999999999999999888777899999999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|+|.+-
T Consensus 172 Eadrlf 177 (529)
T KOG0337|consen 172 EADRLF 177 (529)
T ss_pred hhhHHH
Confidence 998543
No 33
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.9e-26 Score=219.87 Aligned_cols=159 Identities=23% Similarity=0.397 Sum_probs=148.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.-|.++-|.|++++++...||++|+.+|..+||..+-|.|++++|.+|.|||..|++..|+.+... .....
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv---------~g~vs 112 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV---------DGQVS 112 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC---------CCeEE
Confidence 469999999999999999999999999999999999999999999999999999999999888432 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|++|.|||||-||...+..++++..++++.+.+||..+....+.+.+.+||+|+||||++.+.+++.++|++++++|||
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 99999999999999999999999989999999999999998888898999999999999999999999999999999999
Q ss_pred CCccchhh
Q 013623 428 ASLNIESH 435 (439)
Q Consensus 428 EAD~fe~~ 435 (439)
|||.+.++
T Consensus 193 Ecdkmle~ 200 (387)
T KOG0329|consen 193 ECDKMLEQ 200 (387)
T ss_pred hHHHHHHH
Confidence 99966554
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=5.2e-25 Score=243.99 Aligned_cols=148 Identities=24% Similarity=0.287 Sum_probs=126.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcC
Q 013623 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (439)
Q Consensus 274 gL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvP 353 (439)
.|++.+.++|.++||+.||++|.++||.+++|+|+++++|||||||+||++|+++.+... .++++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----------CCcEEEEEcC
Confidence 379999999999999999999999999999999999999999999999999999998642 3679999999
Q ss_pred cHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC----CCCCCCcccEEEeCC
Q 013623 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRWYARTAS 429 (439)
Q Consensus 354 TrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~----~l~L~~Lr~LVlDEA 429 (439)
|||||+|+...++.+.. .++++..+.|+.... +...+..+++|||+||++|...+... ...|++|++||||||
T Consensus 90 traLa~q~~~~l~~l~~--~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 90 TKALAADQLRAVRELTL--RGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred hHHHHHHHHHHHHHhcc--CCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999973 578888888887754 44566677999999999987533221 123789999999999
Q ss_pred ccchh
Q 013623 430 LNIES 434 (439)
Q Consensus 430 D~fe~ 434 (439)
|.+.+
T Consensus 167 h~~~g 171 (742)
T TIGR03817 167 HSYRG 171 (742)
T ss_pred hhccC
Confidence 98754
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.92 E-value=1.5e-25 Score=236.13 Aligned_cols=158 Identities=27% Similarity=0.446 Sum_probs=146.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
...|++|-|...++..|++.+|..||+||..|||+++.+.|+||+|..|+|||++|.+.+++.+... ...+
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---------~~~~ 94 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---------SSHI 94 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc---------cCcc
Confidence 3579999999999999999999999999999999999999999999999999999999999988443 4678
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
+++||+||||+|.||.+.+.+++..-.++++.+++||+.......++.+ ++|+|||||||..+++.+.++.+.|++|||
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 9999999999999999999999986688999999999998887777765 899999999999999999999999999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||||.|-+
T Consensus 174 DEADkL~~ 181 (980)
T KOG4284|consen 174 DEADKLMD 181 (980)
T ss_pred ccHHhhhc
Confidence 99997654
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.8e-25 Score=224.13 Aligned_cols=161 Identities=26% Similarity=0.405 Sum_probs=140.6
Q ss_pred CCCCccccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhc
Q 013623 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337 (439)
Q Consensus 260 ~~~~~~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~ 337 (439)
++.++++.++|+||+|.|+++++|+.|+|.+|+.||..|+|.+|.. +|++.++++|||||.||+|.+|.++...
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 5678899999999999999999999999999999999999999965 7999999999999999999999998543
Q ss_pred cCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh-CCC
Q 013623 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GIL 416 (439)
Q Consensus 338 ~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~-~~l 416 (439)
...|+|+.|+||||||.|+.+++.+++++. ++++..+.-+.....- -.-..+|+|+|||.+.+++.. +++
T Consensus 158 -----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~i 228 (477)
T KOG0332|consen 158 -----VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCI 228 (477)
T ss_pred -----ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhh
Confidence 468999999999999999999999999974 7888777766522110 011258999999999999998 899
Q ss_pred CCCCcccEEEeCCccch
Q 013623 417 QLINLRWYARTASLNIE 433 (439)
Q Consensus 417 ~L~~Lr~LVlDEAD~fe 433 (439)
++..++.+|+||||...
T Consensus 229 d~~kikvfVlDEAD~Mi 245 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMI 245 (477)
T ss_pred ChhhceEEEecchhhhh
Confidence 99999999999998654
No 37
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.8e-25 Score=221.30 Aligned_cols=154 Identities=26% Similarity=0.472 Sum_probs=139.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|++++|.++|++.++..||++|+.||+.||+++..|+|+.+++++|+|||.+|++++++.+... ....+
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~---------~ke~q 96 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS---------VKETQ 96 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc---------hHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999998443 24568
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh-cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L-~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
||+++||||||+|+..+...+..+ .++++..+.|+.....+...+ ..++||+|+||||+.+++..+.+....++++|+
T Consensus 97 alilaPtreLa~qi~~v~~~lg~~-~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvl 175 (397)
T KOG0327|consen 97 ALILAPTRELAQQIQKVVRALGDH-MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVL 175 (397)
T ss_pred HHHhcchHHHHHHHHHHHHhhhcc-cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEee
Confidence 999999999999999999999874 788999999998887555554 456999999999999999999888899999999
Q ss_pred eCCcc
Q 013623 427 TASLN 431 (439)
Q Consensus 427 DEAD~ 431 (439)
||||.
T Consensus 176 DEaDE 180 (397)
T KOG0327|consen 176 DEADE 180 (397)
T ss_pred cchHh
Confidence 99973
No 38
>PRK02362 ski2-like helicase; Provisional
Probab=99.90 E-value=6.6e-24 Score=235.25 Aligned_cols=150 Identities=21% Similarity=0.279 Sum_probs=132.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
+.|++++|++.++++|.+.||..|+|+|.++|+. ++.|+|++++||||||||++|.+|+++.+.. +.
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~------------~~ 68 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR------------GG 68 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc------------CC
Confidence 3699999999999999999999999999999998 7799999999999999999999999998842 45
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+|+++||.|++..++.+.. .++++.+++|+...... ....++|+|+||+++..+++++...+..+++||+
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~--~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvVi 143 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE--LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVV 143 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc--CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEE
Confidence 899999999999999999998765 47899999998765432 2235899999999999999877667889999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||+|.+.+
T Consensus 144 DE~H~l~d 151 (737)
T PRK02362 144 DEVHLIDS 151 (737)
T ss_pred ECccccCC
Confidence 99998764
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=99.90 E-value=2.9e-23 Score=229.66 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=132.7
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
+|+++++++.+++.|.+.||..|+|+|.++|+. ++.|+|++++||||||||++|.+|+++++... +.+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----------~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----------GGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----------CCe
Confidence 689999999999999999999999999999996 78999999999999999999999999987532 468
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+|+++|+.|++..+..+.. .++++..++|+.....+. ...++|+|+||+++..+++++...++++++||+|
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~~~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDSTDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCCchhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 99999999999999999988754 578999999988654332 2458999999999999998777778999999999
Q ss_pred CCccchh
Q 013623 428 ASLNIES 434 (439)
Q Consensus 428 EAD~fe~ 434 (439)
|+|.+.+
T Consensus 146 E~H~l~~ 152 (720)
T PRK00254 146 EIHLIGS 152 (720)
T ss_pred CcCccCC
Confidence 9998753
No 40
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=1.9e-22 Score=181.21 Aligned_cols=132 Identities=30% Similarity=0.520 Sum_probs=116.1
Q ss_pred CHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcC
Q 013623 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (439)
Q Consensus 292 TpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~ 371 (439)
||+|.++|+.+++|+|+++.||||+|||++|++|+++.+... ...++||++|+++|+.|+.+.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----------~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----------KDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------SSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----------CCceEEEEeecccccccccccccccccc
Confidence 799999999999999999999999999999999999988653 2348999999999999999999999874
Q ss_pred CCCceEEEEECCCChH-HHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 372 GVPFRSMVVTGGFRQK-TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 372 ~~~i~v~~l~Gg~~~~-~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.++++..++|+.... .+...+..+++|+|+||++|.+++..+..++.++++||+||+|.+..
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 71 -TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp -TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred -cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 678999999998865 44455566799999999999999998767888899999999998876
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.88 E-value=2.2e-22 Score=226.78 Aligned_cols=156 Identities=22% Similarity=0.320 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT 354 (439)
|++.+.+.+.+ +|..|||+|.++||.+++|+|++++||||||||+||++|+++.+..... ......++++|||+||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~---~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGR---EGELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcc---ccCCCCCeEEEEEcCH
Confidence 56777776655 7999999999999999999999999999999999999999999875321 1112357899999999
Q ss_pred HHHHHHHHHHHHh-------hh----cCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC--CCCCc
Q 013623 355 AELASQVLSNCRS-------LS----KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINL 421 (439)
Q Consensus 355 rELA~Qi~~~l~~-------L~----k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l--~L~~L 421 (439)
++|++|+++.+.. ++ ....++++.+.+|+.....+...+.+.+||||+||++|..++....+ .|.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999876552 22 11126789999999998888777778899999999999888866543 57899
Q ss_pred ccEEEeCCccchh
Q 013623 422 RWYARTASLNIES 434 (439)
Q Consensus 422 r~LVlDEAD~fe~ 434 (439)
++|||||+|.+.+
T Consensus 174 ~~VVIDE~H~l~~ 186 (876)
T PRK13767 174 KWVIVDEIHSLAE 186 (876)
T ss_pred CEEEEechhhhcc
Confidence 9999999998763
No 42
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=8.5e-23 Score=214.35 Aligned_cols=165 Identities=28% Similarity=0.404 Sum_probs=135.5
Q ss_pred ccccccc----cCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCC
Q 013623 266 SRKSFKE----LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (439)
Q Consensus 266 s~~sF~e----lgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 341 (439)
+..+|.+ ...++.+++.|...+|..|||+|.++||.++.++|++.|||||||||++|++|+++++..... ..
T Consensus 130 ~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~----~~ 205 (593)
T KOG0344|consen 130 PLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ----EK 205 (593)
T ss_pred ccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc----cc
Confidence 4567887 468999999999999999999999999999999999999999999999999999999977532 33
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcC-CCCceEEEEECCCChH-HHHHHhcCCCcEEEEChHHHHHHHHhCC--CC
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQK-TQLENLQEGVDVLIATPGRFMFLIKEGI--LQ 417 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~-~~~i~v~~l~Gg~~~~-~q~~~L~~g~dILVaTPgrLldlL~~~~--l~ 417 (439)
...|.+++||.||||||.|++.++.++... +..+++..+....... .+.......++|+|+||-+|..++..+. ++
T Consensus 206 ~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 206 HKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred CccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccch
Confidence 456889999999999999999999999831 3445555554432222 2222233458999999999999999876 78
Q ss_pred CCCcccEEEeCCccchh
Q 013623 418 LINLRWYARTASLNIES 434 (439)
Q Consensus 418 L~~Lr~LVlDEAD~fe~ 434 (439)
+..|.|+|+||||.+-+
T Consensus 286 l~~V~~lV~dEaD~lfe 302 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFE 302 (593)
T ss_pred hheeeeEeechHHhhhC
Confidence 99999999999997654
No 43
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=4.5e-22 Score=220.24 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=132.2
Q ss_pred ccccCCCHHHHHHHH-----HCCCCCC---CHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCC
Q 013623 270 FKELGCSDYMIESLK-----RQNFLRP---SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (439)
Q Consensus 270 F~elgL~~~Ll~aL~-----~~gf~~p---TpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 341 (439)
-+.|++..++.+.+. .+||..| +|+|.|+||.++.+++++++++||+|||++|++|++.++...
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 356788888888886 6899999 999999999999999999999999999999999999887532
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCCCCCC
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGILQLIN 420 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l~L~~ 420 (439)
..++||+||++||.|+.+++..+.++ .++++.+++||.....+...+ +|||+|||||+| .++|+.+.+.++.
T Consensus 136 ----~~v~IVTpTrELA~Qdae~m~~L~k~-lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~ 208 (970)
T PRK12899 136 ----KPVHLVTVNDYLAQRDCEWVGSVLRW-LGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRK 208 (970)
T ss_pred ----CCeEEEeCCHHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCH
Confidence 13899999999999999999999985 789999999999998887665 599999999999 9999998777764
Q ss_pred -------cccEEEeCCccch
Q 013623 421 -------LRWYARTASLNIE 433 (439)
Q Consensus 421 -------Lr~LVlDEAD~fe 433 (439)
+.++||||||.+-
T Consensus 209 ~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 209 EEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred HHhhcccccEEEEechhhhh
Confidence 4899999999664
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=99.87 E-value=6.8e-22 Score=217.10 Aligned_cols=149 Identities=17% Similarity=0.249 Sum_probs=130.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
+.|.+++|++.+++.+.+.+|. ++++|.++|+.+++|+|++++||||||||++|.++++..+.. +.+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------------~~k 67 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------------GLK 67 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------------CCc
Confidence 3688999999999999999997 999999999999999999999999999999999999988743 358
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+|+++||.|+++.+.++.. .++++...+|+....... ...+||+|+||+++..++++....+.++++||+|
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~~---~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViD 142 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPDF---IKRYDVVILTSEKADSLIHHDPYIINDVGLIVAD 142 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChhh---hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEe
Confidence 99999999999999999998754 578888888887544322 2358999999999999998877778999999999
Q ss_pred CCccchh
Q 013623 428 ASLNIES 434 (439)
Q Consensus 428 EAD~fe~ 434 (439)
|+|.+.+
T Consensus 143 EaH~l~d 149 (674)
T PRK01172 143 EIHIIGD 149 (674)
T ss_pred cchhccC
Confidence 9998753
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.85 E-value=2.3e-21 Score=213.82 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT 354 (439)
|++.+.+.+++. |..||+.|.+|||.|.+|+|+|++||||||||+|.+||++..+.... ......+..||||+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsPL 82 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISPL 82 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCcH
Confidence 689999999887 99999999999999999999999999999999999999999997752 1223457899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC--CCCCcccEEEeCCccc
Q 013623 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINLRWYARTASLNI 432 (439)
Q Consensus 355 rELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l--~L~~Lr~LVlDEAD~f 432 (439)
|+|.+.+...++..+. ..++.+.+-+|+++..+....+++-+||||+||+.|.-+|....+ .|.+|+++||||+|.+
T Consensus 83 kALn~Di~~rL~~~~~-~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 83 KALNNDIRRRLEEPLR-ELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHH-HcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 9999999999999988 478999999999999888888888899999999999888866433 6899999999999987
Q ss_pred hh
Q 013623 433 ES 434 (439)
Q Consensus 433 e~ 434 (439)
.+
T Consensus 162 ~~ 163 (814)
T COG1201 162 AE 163 (814)
T ss_pred hc
Confidence 64
No 46
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=1.4e-20 Score=191.89 Aligned_cols=168 Identities=27% Similarity=0.487 Sum_probs=147.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhh---c-------
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ---G------- 337 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~---~------- 337 (439)
..|+|+|+-|+|-.+..++.|.-||.+|.++||.||.|-||+..|.||||||-||.+|+|+.+.+.... .
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~~ 81 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGGM 81 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCcc
Confidence 369999999999999999999999999999999999999999999999999999999999987543110 0
Q ss_pred --------------------------------------------------------------------------------
Q 013623 338 -------------------------------------------------------------------------------- 337 (439)
Q Consensus 338 -------------------------------------------------------------------------------- 337 (439)
T Consensus 82 ~~ga~~~w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLdlGt~~ 161 (725)
T KOG0349|consen 82 ADGAPREWKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLDLGTGL 161 (725)
T ss_pred cCCCccccccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccccCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 013623 338 -------------------------------------------------------------------------------- 337 (439)
Q Consensus 338 -------------------------------------------------------------------------------- 337 (439)
T Consensus 162 ~gFGfGGTGkKS~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~~kn~~lfPAvvlkNael~fNF 241 (725)
T KOG0349|consen 162 DGFGFGGTGKKSTNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVKYKNSNLFPAVVLKNAELSFNF 241 (725)
T ss_pred cccccCccCccccccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChhhcccccchheeeccceEEEec
Confidence
Q ss_pred -------------------------------------cCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcC--CCCceEE
Q 013623 338 -------------------------------------LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSM 378 (439)
Q Consensus 338 -------------------------------------~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~--~~~i~v~ 378 (439)
..+...+.|.+||+-|+|||+.|+++.++++..+ +..++..
T Consensus 242 G~~~FKfpPgngFva~s~Ap~e~~~~n~~~g~~a~~~~~k~~pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~l 321 (725)
T KOG0349|consen 242 GSQPFKFPPGNGFVAVSDAPNEHSKANVNWGSYAEAPSAKPAPNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSL 321 (725)
T ss_pred CCCccccCCCCceEEeecCCccccccCccccccccCcccccCCCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhh
Confidence 0112245689999999999999999988887653 3457888
Q ss_pred EEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhh
Q 013623 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 379 ~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
++.||.....|...+.+|.||+|+||||+++++..+.+.|..|+|||+||+|.|.++
T Consensus 322 Lmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~q 378 (725)
T KOG0349|consen 322 LMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQ 378 (725)
T ss_pred hhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999988764
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=9.8e-20 Score=209.63 Aligned_cols=133 Identities=18% Similarity=0.159 Sum_probs=109.1
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.|+ .||++|.++||.++.|+|++++||||||||+ |.++++..+.. .++++|||+|||+||.|+++.+
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----------~g~~alIL~PTreLa~Qi~~~l 143 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----------KGKKSYIIFPTRLLVEQVVEKL 143 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeccHHHHHHHHHHH
Confidence 577 8999999999999999999999999999995 66666655421 3689999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCCh-----HHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQ-----KTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~-----~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+.++.. .++.+.+++|+... ..+...+. ..+||+|+||++|.+++. .+....+++|||||||.+.+
T Consensus 144 ~~l~~~-~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 144 EKFGEK-VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHhhh-cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 999873 67778778776542 33344454 359999999999999886 45667799999999998763
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.81 E-value=7.7e-20 Score=202.67 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred CCCCCCCHHHHHHhhhHhcCC-cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEE-EcCcHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI-LAPTAELASQVLS 363 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGr-Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLI-LvPTrELA~Qi~~ 363 (439)
.||+ |||||.++||.++.|+ ++++++|||||||.+|.++++.. .. ....|++|| ++||||||.|+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~---------~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI---------GAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc---------cccccceEEEeCchHHHHHHHHH
Confidence 5898 9999999999999998 58888999999999776555522 11 134567777 6699999999999
Q ss_pred HHHhhhcCC----------------------CCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCC----
Q 013623 364 NCRSLSKCG----------------------VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ---- 417 (439)
Q Consensus 364 ~l~~L~k~~----------------------~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~---- 417 (439)
.++++++.. ..+++.+++||.....|+..+..+++||||| .+++.++.++
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT----~D~i~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGT----VDMIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEEC----HHHHcCCccccccc
Confidence 999998742 1488999999999999999999999999999 4777776653
Q ss_pred ------------CCCcccEEEeCCccchh
Q 013623 418 ------------LINLRWYARTASLNIES 434 (439)
Q Consensus 418 ------------L~~Lr~LVlDEAD~fe~ 434 (439)
|+++++||||||| +..
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD-Ld~ 184 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH-LEP 184 (844)
T ss_pred cccccccchhhhhccceEEEEehhh-hcc
Confidence 7889999999999 443
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.81 E-value=1.3e-19 Score=199.65 Aligned_cols=139 Identities=20% Similarity=0.275 Sum_probs=116.4
Q ss_pred HHHHHHH-HHCCCCCCCHHHHHHhhhHhcC------CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEE
Q 013623 277 DYMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (439)
Q Consensus 277 ~~Ll~aL-~~~gf~~pTpIQ~~aIP~iLsG------rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aL 349 (439)
..+++.+ ..++| .||++|.++|+.++.+ .|++++|+||||||++|++|++..+. .+.+++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------~g~q~l 314 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------AGYQAA 314 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEE
Confidence 4555555 55788 5999999999999976 48999999999999999999998873 367999
Q ss_pred EEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHH---HHHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT---QLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 350 ILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~---q~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
||+||++||.|+++.+++++.. .++++.+++|+.+... +...+.. .++||||||+.+.+ .+.+.++++||
T Consensus 315 ilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvV 388 (681)
T PRK10917 315 LMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVI 388 (681)
T ss_pred EEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEE
Confidence 9999999999999999999873 6799999999998644 3444554 49999999998743 45688899999
Q ss_pred EeCCccchh
Q 013623 426 RTASLNIES 434 (439)
Q Consensus 426 lDEAD~fe~ 434 (439)
|||+|.|..
T Consensus 389 IDE~Hrfg~ 397 (681)
T PRK10917 389 IDEQHRFGV 397 (681)
T ss_pred EechhhhhH
Confidence 999999864
No 50
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.80 E-value=1.5e-19 Score=202.56 Aligned_cols=151 Identities=22% Similarity=0.312 Sum_probs=131.1
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcH
Q 013623 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (439)
Q Consensus 276 ~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTr 355 (439)
...+..+|.+.|+..|.++|.+|+..+.+|+|+||+++||||||+||++||++++.... ..+||+|.||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtn 125 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTN 125 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechh
Confidence 44568888889999999999999999999999999999999999999999999998753 33899999999
Q ss_pred HHHHHHHHHHHhhhcCCC-CceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC----CCCCCCcccEEEeCCc
Q 013623 356 ELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRWYARTASL 430 (439)
Q Consensus 356 ELA~Qi~~~l~~L~k~~~-~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~----~l~L~~Lr~LVlDEAD 430 (439)
+||+.+.+.++++..... +++....+|++...+....+++.+|||++||..|..++.+. ...+.+++|||+||+|
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 999999999999987422 58899999999888776777888999999999999866543 3356789999999999
Q ss_pred cchhhh
Q 013623 431 NIESHF 436 (439)
Q Consensus 431 ~fe~~~ 436 (439)
.|.+-|
T Consensus 206 tYrGv~ 211 (851)
T COG1205 206 TYRGVQ 211 (851)
T ss_pred eccccc
Confidence 988744
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.80 E-value=2.1e-19 Score=196.40 Aligned_cols=137 Identities=20% Similarity=0.288 Sum_probs=114.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHhhhHhcC------CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEc
Q 013623 279 MIESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (439)
Q Consensus 279 Ll~aL~~~gf~~pTpIQ~~aIP~iLsG------rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILv 352 (439)
+.+.+..++| .||++|.++|+.|+.+ .+.+++|+||||||++|++|++..+. .+.+++||+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------~g~qvlila 291 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------AGYQVALMA 291 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------------cCCcEEEEC
Confidence 3445577899 6999999999999976 36899999999999999999998873 367899999
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHH---HHHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeC
Q 013623 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT---QLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTA 428 (439)
Q Consensus 353 PTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~---q~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDE 428 (439)
||++||.|+++.+++++. ..++++.+++|+..... +...+.. .++|||+||+.|.+ .+.+.++++|||||
T Consensus 292 PT~~LA~Q~~~~~~~l~~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDE 365 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLA-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDE 365 (630)
T ss_pred CHHHHHHHHHHHHHHHhc-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEec
Confidence 999999999999999987 36899999999987765 3444443 48999999998743 45678899999999
Q ss_pred Cccchh
Q 013623 429 SLNIES 434 (439)
Q Consensus 429 AD~fe~ 434 (439)
+|.|..
T Consensus 366 aH~fg~ 371 (630)
T TIGR00643 366 QHRFGV 371 (630)
T ss_pred hhhccH
Confidence 998753
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.80 E-value=2.6e-19 Score=210.58 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=115.3
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcH
Q 013623 277 DYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (439)
Q Consensus 277 ~~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTr 355 (439)
.++.+.+++ +|| .||++|.++||.+++|+|++++||||||||++|+++++... ..+.++|||+||+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~------------~~g~~aLVl~PTr 132 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA------------LKGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH------------hcCCeEEEEECHH
Confidence 345556665 899 69999999999999999999999999999997666655432 1357899999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCceEEEEECCCChHHHH---HHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc
Q 013623 356 ELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQKTQL---ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTASL 430 (439)
Q Consensus 356 ELA~Qi~~~l~~L~k~-~~~i~v~~l~Gg~~~~~q~---~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD 430 (439)
+|+.|+++.++.++.. +.++++..++|+.+...+. ..+.. .++|||+||++|.+.+... . ...+++|||||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECce
Confidence 9999999999998863 2457788889998877663 34444 4999999999999887642 2 2679999999999
Q ss_pred cchh
Q 013623 431 NIES 434 (439)
Q Consensus 431 ~fe~ 434 (439)
.+.+
T Consensus 211 ~ml~ 214 (1638)
T PRK14701 211 AFLK 214 (1638)
T ss_pred eccc
Confidence 7753
No 53
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=2e-19 Score=189.98 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=102.6
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.+||..|+|+|.++|+.+++|+|+++++|||||||+||++|++.. +..+|||+||++|+.|+...
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------------CCcEEEEecHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999998742 24689999999999998888
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHH---Hh-cCCCcEEEEChHHHHHHH-HhCCC-CCCCcccEEEeCCccch
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLI-KEGIL-QLINLRWYARTASLNIE 433 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~---~L-~~g~dILVaTPgrLldlL-~~~~l-~L~~Lr~LVlDEAD~fe 433 (439)
+..+ ++.+..+.++.....+.. .+ ...++||++||+++.... ....+ .+..+++|||||||.+.
T Consensus 71 l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~ 140 (470)
T TIGR00614 71 LKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS 140 (470)
T ss_pred HHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC
Confidence 7753 567777887776654322 22 234899999999975422 11112 56789999999999764
No 54
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.80 E-value=4.2e-19 Score=204.52 Aligned_cols=141 Identities=22% Similarity=0.201 Sum_probs=111.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH
Q 013623 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (439)
Q Consensus 278 ~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL 357 (439)
++.+.+.+.....||++|..+||.++.|+|++++||||||||+ |.+|++..+.. .++++|||+||++|
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTreL 133 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHHH
Confidence 3444455544457999999999999999999999999999997 77887766532 26899999999999
Q ss_pred HHHHHHHHHhhhcCCCCceEE---EEECCCChHHH---HHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc
Q 013623 358 ASQVLSNCRSLSKCGVPFRSM---VVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTASL 430 (439)
Q Consensus 358 A~Qi~~~l~~L~k~~~~i~v~---~l~Gg~~~~~q---~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD 430 (439)
|.|+++.++.++.. .++.+. +++|+.+...+ ...+.+ +++|||+||++|.+++.+- .. .+++|||||||
T Consensus 134 a~Qi~~~l~~l~~~-~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD 209 (1171)
T TIGR01054 134 VIQVAEKISSLAEK-AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHHHHh-cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChH
Confidence 99999999999873 444433 46788877654 334444 5999999999999888652 22 79999999999
Q ss_pred cchh
Q 013623 431 NIES 434 (439)
Q Consensus 431 ~fe~ 434 (439)
.+.+
T Consensus 210 ~~L~ 213 (1171)
T TIGR01054 210 ALLK 213 (1171)
T ss_pred hhhh
Confidence 8865
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.79 E-value=8.3e-19 Score=197.94 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=115.9
Q ss_pred CCHHHHHHHH-HCCCCCCCHHHHHHhhhHhcC------CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 275 CSDYMIESLK-RQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 275 L~~~Ll~aL~-~~gf~~pTpIQ~~aIP~iLsG------rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+..+...+. .++|+ ||++|.++|+.++.+ +|++++|+||||||++|++|++..+.. +.+
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------g~q 502 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------GKQ 502 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------------CCe
Confidence 4456666674 46885 999999999999975 799999999999999999999988742 468
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH---HHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q---~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
++||+||++||.|+++.+++++. ..++++.+++|+....++ ...+.. .+|||||||. ++ .+.+.+++|++
T Consensus 503 vlvLvPT~~LA~Q~~~~f~~~~~-~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~~L~l 576 (926)
T TIGR00580 503 VAVLVPTTLLAQQHFETFKERFA-NFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFKDLGL 576 (926)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhc-cCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcccCCE
Confidence 99999999999999999999877 367899999988765443 334444 4999999994 23 35678899999
Q ss_pred EEEeCCccchh
Q 013623 424 YARTASLNIES 434 (439)
Q Consensus 424 LVlDEAD~fe~ 434 (439)
|||||+|.|..
T Consensus 577 lVIDEahrfgv 587 (926)
T TIGR00580 577 LIIDEEQRFGV 587 (926)
T ss_pred EEeecccccch
Confidence 99999999863
No 56
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.77 E-value=1.3e-18 Score=196.22 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=112.5
Q ss_pred ccccccCC--CHHHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCC
Q 013623 268 KSFKELGC--SDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (439)
Q Consensus 268 ~sF~elgL--~~~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~ 344 (439)
..|...++ ...+...+++ +||..++|+|.++|+.++.|+|+++++|||+|||+||++|+|..
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 45665444 4566666654 79999999999999999999999999999999999999999842
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc------CCCcEEEEChHHHHH--HHHhCC-
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ------EGVDVLIATPGRFMF--LIKEGI- 415 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~------~g~dILVaTPgrLld--lL~~~~- 415 (439)
...+|||+|+++|++++...+. . .++++..+.++....++...+. ..++|||+||++|.. .+.+..
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~---~--~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~ 574 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLL---Q--ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE 574 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHH---h--CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH
Confidence 2468999999999985544443 2 4688999999988877655442 458999999999862 222211
Q ss_pred --CCCCCcccEEEeCCccchh
Q 013623 416 --LQLINLRWYARTASLNIES 434 (439)
Q Consensus 416 --l~L~~Lr~LVlDEAD~fe~ 434 (439)
.....|.+|||||||.+.+
T Consensus 575 ~L~~~~~LslIVIDEAHcVSq 595 (1195)
T PLN03137 575 NLNSRGLLARFVIDEAHCVSQ 595 (1195)
T ss_pred hhhhccccceeccCcchhhhh
Confidence 1234589999999997653
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.75 E-value=5.5e-18 Score=194.91 Aligned_cols=135 Identities=21% Similarity=0.185 Sum_probs=112.0
Q ss_pred HHHHHHCCCCCCCHHHHHHhhhHhcC------CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcC
Q 013623 280 IESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (439)
Q Consensus 280 l~aL~~~gf~~pTpIQ~~aIP~iLsG------rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvP 353 (439)
.+....+.| .||++|.++|+.++.+ +|++++++||+|||.+|+.+++..+. .+.+++||+|
T Consensus 591 ~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------~g~qvlvLvP 657 (1147)
T PRK10689 591 QLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------NHKQVAVLVP 657 (1147)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------------cCCeEEEEeC
Confidence 344467888 6999999999999987 89999999999999999988876652 3679999999
Q ss_pred cHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCC
Q 013623 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLRWYARTAS 429 (439)
Q Consensus 354 TrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEA 429 (439)
|++||.|+++.+++++.. .++++.+++|+.+..++...+ . ..+|||||||+.+ ...+.+.++++|||||+
T Consensus 658 T~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEa 731 (1147)
T PRK10689 658 TTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEE 731 (1147)
T ss_pred cHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEech
Confidence 999999999999987652 578888899888877665443 2 3599999999633 24567889999999999
Q ss_pred ccch
Q 013623 430 LNIE 433 (439)
Q Consensus 430 D~fe 433 (439)
|.|.
T Consensus 732 hrfG 735 (1147)
T PRK10689 732 HRFG 735 (1147)
T ss_pred hhcc
Confidence 9985
No 58
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.75 E-value=4.2e-18 Score=184.60 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=108.0
Q ss_pred HHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 281 ESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 281 ~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
+.|++ +||..++++|.++|+.++.|+|+++++|||+|||+||++|++.. ...+|||+|+++|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------------~g~~lVisPl~sL~~ 67 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------------KGLTVVISPLISLMK 67 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------------CCcEEEEcCCHHHHH
Confidence 34544 89999999999999999999999999999999999999998832 235799999999999
Q ss_pred HHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---h-cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 360 Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L-~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
|+...++.+ ++.+..+.++....++... + ...++||++||++|........+...++.+|||||||.+.
T Consensus 68 dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~ 140 (591)
T TIGR01389 68 DQVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS 140 (591)
T ss_pred HHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc
Confidence 998888764 4677788888776654332 2 3468999999999975444445566789999999999875
No 59
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.75 E-value=8.5e-18 Score=183.02 Aligned_cols=138 Identities=17% Similarity=0.245 Sum_probs=106.6
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcH
Q 013623 277 DYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (439)
Q Consensus 277 ~~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTr 355 (439)
+.....|++ +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++.. ...+|||+|++
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVisPl~ 75 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVSPLI 75 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEecHH
Confidence 334444533 79999999999999999999999999999999999999999842 23689999999
Q ss_pred HHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHH---Hhc-CCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQ-EGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 356 ELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~---~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
+|+.|+...++.+ ++.+.++.++.....+.. .+. ...+|+++||++|........+...++.+|||||||.
T Consensus 76 sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 76 SLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccc
Confidence 9999998888754 466777777766655432 222 3489999999998742222234456789999999997
Q ss_pred chh
Q 013623 432 IES 434 (439)
Q Consensus 432 fe~ 434 (439)
+.+
T Consensus 151 i~~ 153 (607)
T PRK11057 151 ISQ 153 (607)
T ss_pred ccc
Confidence 653
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.71 E-value=2.3e-17 Score=183.03 Aligned_cols=145 Identities=20% Similarity=0.272 Sum_probs=122.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcC
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvP 353 (439)
+++.+...+...++..+.+-|+.++.. +++++|+|+++|||||||+..++.+++.+.+. +.++|+|||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----------~~k~vYivP 84 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----------GGKVVYIVP 84 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----------CCcEEEEeC
Confidence 677788888888886666666666654 56789999999999999999999999998653 568999999
Q ss_pred cHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 354 TrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
+++||.|.+..++.+.. .++++...+|+....... ..+++|||+||+++-.++++...-+..|++|||||+|.+.
T Consensus 85 lkALa~Ek~~~~~~~~~--~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 85 LKALAEEKYEEFSRLEE--LGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred hHHHHHHHHHHhhhHHh--cCCEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 99999999999997665 689999999998765432 1358999999999999998877778889999999999987
Q ss_pred hh
Q 013623 434 SH 435 (439)
Q Consensus 434 ~~ 435 (439)
+.
T Consensus 160 d~ 161 (766)
T COG1204 160 DR 161 (766)
T ss_pred Cc
Confidence 65
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.2e-16 Score=177.08 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=110.9
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+|+ .|+++|..+++.++.|+ ++.++||+|||++|++|++.... .|.+++|++||++||.|.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al------------~G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL------------EGKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH------------cCCCeEEEeCCHHHHHHHHHHH
Confidence 566 89999999999999887 99999999999999999986653 3678999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCC------CCCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~------l~L~~Lr~LVlDEAD~fe 433 (439)
..+..+ .++++.+++|+.....+.. ...++||++|||++| .|+|+.+. ..+..++|+||||||.+.
T Consensus 140 ~~l~~~-lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 140 GQVYEF-LGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHhh-cCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 999985 7999999999988433322 335699999999999 77776543 356789999999999764
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.1e-16 Score=174.11 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=109.3
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+| ..|+++|..++|.++.|+ |+.++||+|||++|++|++.+.. .+++++||+||++||.|.+.++
T Consensus 100 lg-~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------------~G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 100 LG-QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------------AGLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred hC-CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------------cCCeEEEEcCcHHHHHHHHHHH
Confidence 45 479999999999999999 99999999999999999998753 3679999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCCC-------------------------CC
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGILQ-------------------------LI 419 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l~-------------------------L~ 419 (439)
..+..+ .++++.+++|+.... ......+|||+|+|...| .|+|+.+... ..
T Consensus 165 ~~l~~~-lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 165 RPLYEA-LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHhh-cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 999985 789999999997643 445557899999999988 6666544221 24
Q ss_pred CcccEEEeCCccch
Q 013623 420 NLRWYARTASLNIE 433 (439)
Q Consensus 420 ~Lr~LVlDEAD~fe 433 (439)
.+.|.||||+|.+-
T Consensus 242 ~~~~aIvDEvDSiL 255 (656)
T PRK12898 242 GLHFAIVDEADSVL 255 (656)
T ss_pred ccceeEeeccccee
Confidence 57899999999654
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.69 E-value=1e-16 Score=175.70 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=111.9
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+| .+|+++|..+.+.++.|+ ++.++||+|||++|++|++-.... +.+++|++||++||.|.++++
T Consensus 53 lg-~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------------G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 53 LG-MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------------GKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred hC-CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------------CCCEEEEcCCHHHHHHHHHHH
Confidence 45 479999999999998887 999999999999999999644432 336999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhC------CCCCCCcccEEEeCCccchh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRWYARTASLNIES 434 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~------~l~L~~Lr~LVlDEAD~fe~ 434 (439)
..+.++ .++++.+++|+.....+...+ .+||+||||++| .++|+.+ .+.+..+.++||||+|.|.-
T Consensus 118 ~~l~~~-LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 118 GQVYRF-LGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HHHhcc-CCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 999985 789999999998876554443 589999999999 9999877 34678899999999997753
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.68 E-value=8.8e-17 Score=187.13 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=100.1
Q ss_pred EEcCCCCCcceeehhHHHHHHHHHHhhcc-CCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh-----------cCCCCceE
Q 013623 310 LADQSGSGKTLAYLLPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLS-----------KCGVPFRS 377 (439)
Q Consensus 310 i~ApTGSGKTlaylLPiL~~l~~~~~~~~-~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~-----------k~~~~i~v 377 (439)
|+||||||||+||+||+|+++........ ......++++|||+|+++|++|+++.++... ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999975421100 0011346899999999999999999887521 12247899
Q ss_pred EEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-CCCCCCcccEEEeCCccchh
Q 013623 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRWYARTASLNIES 434 (439)
Q Consensus 378 ~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.+.+|+++..++...+++.+||||+||++|..+|.++ ...|++|++|||||+|.+.+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g 138 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAG 138 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcc
Confidence 9999999998887777778999999999999988754 34689999999999998864
No 65
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.1e-16 Score=176.69 Aligned_cols=143 Identities=15% Similarity=0.254 Sum_probs=116.1
Q ss_pred HCCCCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
-++|..++.+|+.++|.+. ++.|+|||||||||||..|+|.||+.+.+.+ ..........++|+|+|+++||.++++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~--~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE--EQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc--cccccccCCceEEEEechHHHHHHHHH
Confidence 3688999999999999998 6789999999999999999999999998742 223444678999999999999999988
Q ss_pred HHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC----CCCCcccEEEeCCccchh
Q 013623 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL----QLINLRWYARTASLNIES 434 (439)
Q Consensus 364 ~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l----~L~~Lr~LVlDEAD~fe~ 434 (439)
.+.+-+. ..++.+..++|+....... + ..++|||+||+++ |++.++.. .++.|++|||||+|.+-+
T Consensus 183 ~~~kkl~-~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd 252 (1230)
T KOG0952|consen 183 KFSKKLA-PLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD 252 (1230)
T ss_pred HHhhhcc-cccceEEEecCcchhhHHH--H-HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC
Confidence 7766555 3789999999998765443 1 2489999999997 44444322 357799999999998865
No 66
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.66 E-value=9.7e-16 Score=137.79 Aligned_cols=139 Identities=32% Similarity=0.511 Sum_probs=115.1
Q ss_pred HCCCCCCCHHHHHHhhhHhcC-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
..++..|++.|.+++..++.. +++++.++||||||.+++.+++..+... ...++||++|++.++.|...
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------~~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG----------KGKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc----------CCCcEEEEeCCHHHHHHHHH
Confidence 457889999999999999988 9999999999999999999999887543 13578999999999999999
Q ss_pred HHHhhhcCCCCceEEEEECCCChHHHHHHhcCCC-cEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV-DVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 364 ~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~-dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.+..+... .........++.........+..+. +|+++|++.+.+.+.........++++|+||+|.+..
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 73 ELKKLGPS-LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred HHHHHhcc-CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 99988753 2334555566665555555565555 9999999999999998877788899999999998874
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.65 E-value=7.9e-16 Score=169.49 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=103.6
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+|. .|+++|......+..| .+++++||+|||++|++|++.+... +..++||+|+++||.|..+++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~------------g~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT------------GKGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc------------CCceEEeCCCHHHHHHHHHHH
Confidence 465 6777777777766666 6999999999999999998766542 446999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCC---hHHHHHHhcCCCcEEEEChHHH-HHHHHhC------CCCCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFR---QKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~---~~~q~~~L~~g~dILVaTPgrL-ldlL~~~------~l~L~~Lr~LVlDEAD~fe 433 (439)
..+.++ .++.+.+++++.. ...+......+|||+++||++| .++|+.+ ...+..+.++|+||||.+-
T Consensus 132 ~~l~~~-LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 132 GPVYEW-LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred HHHHhh-cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 999885 7888888877632 2333344446899999999999 6766543 3446789999999999764
No 68
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=2.1e-15 Score=167.65 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=107.4
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..|..+|...--++..|+ ++.++||+|||++|++|++..+.. +..++||+||++||.|.++++..+
T Consensus 81 ~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~------------G~~V~VvTpn~yLA~qd~e~m~~l 146 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS------------GRGVHIVTVNDYLAKRDSQWMKPI 146 (896)
T ss_pred CCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc------------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 467888877655555555 899999999999999999977643 346899999999999999999999
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhC-CCCC-----CCcccEEEeCCccch
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQL-----INLRWYARTASLNIE 433 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~-~l~L-----~~Lr~LVlDEAD~fe 433 (439)
..+ .++++.+++|+.....+...+ .+||+||||++| .++|+.+ .+++ ..+.|+||||||.+-
T Consensus 147 ~~~-lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 147 YEF-LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred hcc-cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 985 789999999998877765554 689999999999 9999887 3445 579999999999764
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.60 E-value=3.8e-15 Score=158.90 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=94.9
Q ss_pred CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
...|+++|.++++.++.+++.++++|||+|||+++.. +...+.. ....++|||+||++|+.|+.+.+++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~----------~~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLE----------NYEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHh----------cCCCeEEEEECcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999987543 2222211 1234899999999999999999998
Q ss_pred hhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 368 L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
+... ....+..+.+|.... .+.+|+|+||+++..... ..+..+++||+||||++.
T Consensus 181 ~~~~-~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~ 235 (501)
T PHA02558 181 YRLF-PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFT 235 (501)
T ss_pred hccc-cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhccc
Confidence 8653 234455566665322 357999999999876543 246789999999999875
No 70
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.59 E-value=1.3e-14 Score=160.15 Aligned_cols=121 Identities=22% Similarity=0.311 Sum_probs=99.9
Q ss_pred CCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
.+|+.|.+++..++.+ +++++.++||||||.+|+.++...+.. +.++|||+||++|+.|+++.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------------g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------------GKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------------CCeEEEEeCcHHHHHHHHHHHH
Confidence 5899999999999974 789999999999999999887776632 4689999999999999999998
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHH---h-cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~---L-~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
+.+ +..+.+++|+.+..++... + ...++|+||||+++. ..+.++++|||||+|.+.
T Consensus 212 ~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s 271 (679)
T PRK05580 212 ARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSS 271 (679)
T ss_pred HHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccc
Confidence 753 4678899999877655332 2 345899999999864 457889999999998654
No 71
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.59 E-value=4.5e-15 Score=156.21 Aligned_cols=155 Identities=22% Similarity=0.301 Sum_probs=132.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
....+|.+++.+.+-|+..||+.+.|+|..++.. ++.|.|.++.++|+||||+..-++=+.+++.. +-
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-----------g~ 262 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-----------GK 262 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-----------CC
Confidence 4578999999999999999999999999999988 77999999999999999999999988887653 55
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHH----HhcCCCcEEEEChHHHHHHHHhCCCCCCCcc
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE----NLQEGVDVLIATPGRFMFLIKEGILQLINLR 422 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~----~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr 422 (439)
+.|+|+|.-+||+|-+..|+.-.. ..++++.+-+|...+....+ .....+||||+|-+-+-.+|+.+ ..+.++.
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs-~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiG 340 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYS-KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIG 340 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhh-cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccc
Confidence 789999999999999999876554 37888888888776654422 12245899999999998898887 7889999
Q ss_pred cEEEeCCccchhh
Q 013623 423 WYARTASLNIESH 435 (439)
Q Consensus 423 ~LVlDEAD~fe~~ 435 (439)
.+||||+|+++++
T Consensus 341 tVVIDEiHtL~de 353 (830)
T COG1202 341 TVVIDEIHTLEDE 353 (830)
T ss_pred eEEeeeeeeccch
Confidence 9999999999863
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.57 E-value=9.7e-15 Score=162.78 Aligned_cols=135 Identities=23% Similarity=0.267 Sum_probs=112.3
Q ss_pred CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 287 gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
+...|.++|..++..++.+ |+++++|||+|||++|+++++..+.. .+.++|||+||++|+.|....++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----------~~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----------KGGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 4557889999999888876 99999999999999999999887731 34689999999999999999999
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhh
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
.+... ....+..++|+........ +..+++|+|+||+.+...+..+.+.+.++++|||||||.+.+.
T Consensus 80 ~~~~~-~~~~v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~ 146 (773)
T PRK13766 80 KFLNI-PEEKIVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGN 146 (773)
T ss_pred HHhCC-CCceEEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccccc
Confidence 88652 3457788888887664433 3345799999999999888888889999999999999987653
No 73
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.52 E-value=4.4e-14 Score=155.18 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=97.1
Q ss_pred HHHHHHhhhHhcCCcEEEEcCCCCCccee---------ehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 293 QIQAMAFPPVVEGKSCILADQSGSGKTLA---------YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 293 pIQ~~aIP~iLsGrDvli~ApTGSGKTla---------ylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
.+|.++++.+++|+|++++|+||||||.+ |++|.+..+..-. ......+++|++||||||.|+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~------~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID------PNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc------cccCCcEEEEECcHHHHHHHHHH
Confidence 37999999999999999999999999997 6666666553210 11245689999999999999999
Q ss_pred HHHhhhcC--CCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 364 NCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 364 ~l~~L~k~--~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.+.+...+ ..++.+.+.+|+... .+........+|||+|++. ....|..+++|||||||.+..
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~ 305 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQ 305 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCcc
Confidence 98776653 135678889999873 3333333468999999762 123578899999999997643
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.51 E-value=7.1e-14 Score=143.20 Aligned_cols=126 Identities=15% Similarity=0.189 Sum_probs=94.5
Q ss_pred HHHHHhhhHhcCCc--EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcC
Q 013623 294 IQAMAFPPVVEGKS--CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (439)
Q Consensus 294 IQ~~aIP~iLsGrD--vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~ 371 (439)
+|.++|+.+..+.+ ++++||||||||+||++|++.. ..++||++|+++|+.|+++.++.+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------------~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------------ENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------------CCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 49999999998874 7899999999999999998841 235799999999999999999888641
Q ss_pred ---CCCceEEEEECCCChHH--HH------------------HHhcCCCcEEEEChHHHHHHHHhCCC--------CCCC
Q 013623 372 ---GVPFRSMVVTGGFRQKT--QL------------------ENLQEGVDVLIATPGRFMFLIKEGIL--------QLIN 420 (439)
Q Consensus 372 ---~~~i~v~~l~Gg~~~~~--q~------------------~~L~~g~dILVaTPgrLldlL~~~~l--------~L~~ 420 (439)
..++.+..+.|...... .. ......++|+++||+.|..+++.... .+..
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 13466666676532220 00 01123689999999999877764211 2578
Q ss_pred cccEEEeCCccchh
Q 013623 421 LRWYARTASLNIES 434 (439)
Q Consensus 421 Lr~LVlDEAD~fe~ 434 (439)
+++||+||+|.+..
T Consensus 146 ~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 146 FSTVIFDEFHLYDA 159 (357)
T ss_pred CCEEEEecccccCc
Confidence 99999999999874
No 75
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.48 E-value=9.5e-14 Score=144.96 Aligned_cols=136 Identities=24% Similarity=0.289 Sum_probs=115.0
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+..+|......++. +|+|++.|||-|||+..++-+..++... .+ ++|+|+||+.|+.|....|++.
T Consensus 14 ie~R~YQ~~i~a~al~-~NtLvvlPTGLGKT~IA~~V~~~~l~~~----------~~-kvlfLAPTKPLV~Qh~~~~~~v 81 (542)
T COG1111 14 IEPRLYQLNIAAKALF-KNTLVVLPTGLGKTFIAAMVIANRLRWF----------GG-KVLFLAPTKPLVLQHAEFCRKV 81 (542)
T ss_pred ccHHHHHHHHHHHHhh-cCeEEEecCCccHHHHHHHHHHHHHHhc----------CC-eEEEecCCchHHHHHHHHHHHH
Confidence 3455566666655554 4999999999999999988888888653 34 8999999999999999999999
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhhcc
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHFSY 438 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~~~ 438 (439)
.. ...-.++.++|..+..+....+.+ ..|+|+||..+..-|..|.+++.++.+||+||||.=.+...|
T Consensus 82 ~~-ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAY 149 (542)
T COG1111 82 TG-IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAY 149 (542)
T ss_pred hC-CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchH
Confidence 76 345678899999999888777765 689999999999999999999999999999999987766554
No 76
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.48 E-value=3.8e-13 Score=113.99 Aligned_cols=118 Identities=31% Similarity=0.420 Sum_probs=96.5
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCC
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~ 385 (439)
+++++.++||+|||..++..+...... ....++||++|++.|+.|..+.+...... .+.+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcc
Confidence 478999999999999998888877643 13568999999999999999998887652 677778887776
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhh
Q 013623 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 386 ~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
...+........+|+|+|++.+...+...........+||+||+|.+...
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 66655555667999999999999888777666677899999999988653
No 77
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.4e-13 Score=152.88 Aligned_cols=129 Identities=20% Similarity=0.238 Sum_probs=108.4
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHH-HHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI-QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL-~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
+| .+|..+|...-=++..|+ +..++||+|||++|.+|++ +.+ . +..+-|++||.+||.|.++.
T Consensus 78 lg-~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~------------G~~V~IvTpn~yLA~rd~e~ 141 (830)
T PRK12904 78 LG-MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-T------------GKGVHVVTVNDYLAKRDAEW 141 (830)
T ss_pred hC-CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-c------------CCCEEEEecCHHHHHHHHHH
Confidence 45 468899998876676775 8999999999999999996 444 2 23577999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
+..+..+ .++++.+++|+.+...+...+ .+||+++||++| .++|+.+.. .+..+.|+||||||.+.
T Consensus 142 ~~~l~~~-LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 142 MGPLYEF-LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHHHhh-cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999985 799999999999888776664 489999999999 999987652 36789999999999654
No 78
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.47 E-value=1.5e-13 Score=154.02 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=90.1
Q ss_pred HhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceE
Q 013623 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377 (439)
Q Consensus 298 aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v 377 (439)
.+..+.++++++++|+||||||.+|.+++++... ...++||+.|||++|.|+++.+........+..+
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 4445567899999999999999999999986531 1248999999999999999988654432355666
Q ss_pred EEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 378 ~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
...+++... .....+|+|+|||+|++++.. ...|+.+++|||||+|.
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHE 127 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHE 127 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCc
Confidence 666655432 123468999999999999876 45799999999999996
No 79
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.44 E-value=5e-13 Score=149.86 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=89.8
Q ss_pred HHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCce
Q 013623 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376 (439)
Q Consensus 297 ~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~ 376 (439)
+.+..+..+++++++|+||||||.+|.+++++... .+.++||+.|+|++|.|++..+........+..
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 34455667899999999999999999999998751 235899999999999999998865443234445
Q ss_pred EEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 377 v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
+...+++.. ......+|+|+|||+|++++.. ...|+.+++|||||+|.
T Consensus 77 VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHE 124 (819)
T TIGR01970 77 VGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHE 124 (819)
T ss_pred EEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccch
Confidence 544444322 2334579999999999999976 46799999999999994
No 80
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.41 E-value=1.5e-12 Score=147.22 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=107.8
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHhh----hHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEE
Q 013623 276 SDYMIESLKRQNFLRPSQIQAMAFP----PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (439)
Q Consensus 276 ~~~Ll~aL~~~gf~~pTpIQ~~aIP----~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLIL 351 (439)
.+.+...+...||+ +.+.|.+++. .+..++++++.||||+|||++|++|++..+. . +-++||.
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~-----------~~~vvi~ 298 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T-----------EKPVVIS 298 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C-----------CCeEEEE
Confidence 45677788888987 7899998776 4457899999999999999999999988764 1 2379999
Q ss_pred cCcHHHHHHHHH-HHHhhhcC-CCCceEEEEECCCChHH---------------H-------------------------
Q 013623 352 APTAELASQVLS-NCRSLSKC-GVPFRSMVVTGGFRQKT---------------Q------------------------- 389 (439)
Q Consensus 352 vPTrELA~Qi~~-~l~~L~k~-~~~i~v~~l~Gg~~~~~---------------q------------------------- 389 (439)
+||++|..|+.. .+..+.+. +.+++++++.|+.++-. +
T Consensus 299 t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~ 378 (850)
T TIGR01407 299 TNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNL 378 (850)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccC
Confidence 999999999865 45555442 34578888887753200 0
Q ss_pred -------------------------------HHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhh
Q 013623 390 -------------------------------LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 390 -------------------------------~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
.......+||||+...-|+..+......+..-++|||||||+|++..
T Consensus 379 ~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a 456 (850)
T TIGR01407 379 KGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIA 456 (850)
T ss_pred CCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHH
Confidence 00001236899999998887775443334555899999999998643
No 81
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.40 E-value=5.5e-13 Score=135.23 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=80.8
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCCh
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~ 386 (439)
|+++.||||||||++|++|++..+... .+.++||++|+++|+.|+++.+..++.. .+..+.|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~----------~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ----------KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC----------CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHH
Confidence 689999999999999999999876432 3568999999999999999999988541 23333333221
Q ss_pred H------------HHHHHh-c-----CCCcEEEEChHHHHHHHHhCC----CCCC--CcccEEEeCCccchhh
Q 013623 387 K------------TQLENL-Q-----EGVDVLIATPGRFMFLIKEGI----LQLI--NLRWYARTASLNIESH 435 (439)
Q Consensus 387 ~------------~q~~~L-~-----~g~dILVaTPgrLldlL~~~~----l~L~--~Lr~LVlDEAD~fe~~ 435 (439)
. ...... . -..+|+|+||++++..+..+. ..+. ...+|||||+|.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~ 139 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY 139 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH
Confidence 0 001111 1 136799999999988876521 1111 2378999999998753
No 82
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.39 E-value=9.3e-13 Score=143.74 Aligned_cols=136 Identities=21% Similarity=0.243 Sum_probs=107.0
Q ss_pred CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 287 gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
..-.+..+|......+| |+|++|++|||+|||++...-+++++... ...++|+++||+-|+.|+...+.
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~----------p~~KiVF~aP~~pLv~QQ~a~~~ 127 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR----------PKGKVVFLAPTRPLVNQQIACFS 127 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC----------CcceEEEeeCCchHHHHHHHHHh
Confidence 34457789999998888 99999999999999999999999998653 34799999999999999996666
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCC-CCCcccEEEeCCccchhhh
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ-LINLRWYARTASLNIESHF 436 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~-L~~Lr~LVlDEAD~fe~~~ 436 (439)
.++. +..+....||.....-...+-...+|+|.||..|...|..+... |+.+.++|+||||.=-+..
T Consensus 128 ~~~~---~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~ 195 (746)
T KOG0354|consen 128 IYLI---PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNH 195 (746)
T ss_pred hccC---cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccc
Confidence 6653 36666666664332222233345899999999999999887554 5999999999999755543
No 83
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.7e-12 Score=144.46 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=104.7
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..|.++|...=-.+..|+ ++.++||.|||++|.+|++.+.+. +..+.||+|+++||.|..+++..+
T Consensus 81 m~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~------------g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT------------GKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred CCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc------------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 367888876554454555 899999999999999999877753 345999999999999999999999
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhC-CCCC-----CCcccEEEeCCccch
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQL-----INLRWYARTASLNIE 433 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~-~l~L-----~~Lr~LVlDEAD~fe 433 (439)
..+ .++++.+++++...... .-...|||++|||++| .++|+.+ .+.. ..+.|+||||||.+-
T Consensus 147 ~~~-lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 147 FEF-LGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HHh-cCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 996 89999999998876433 2235799999999999 9999887 3343 678999999999664
No 84
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.35 E-value=7.3e-12 Score=136.68 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=94.2
Q ss_pred hHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh-cC-CCCceEE
Q 013623 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KC-GVPFRSM 378 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~-k~-~~~i~v~ 378 (439)
.+..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. +. +.++++.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~----------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER----------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc----------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 344678999999999999999999999887532 24689999999999999999988887 32 2467777
Q ss_pred EEECCCChHH----------------------------------------------------------------------
Q 013623 379 VVTGGFRQKT---------------------------------------------------------------------- 388 (439)
Q Consensus 379 ~l~Gg~~~~~---------------------------------------------------------------------- 388 (439)
++.|..++-.
T Consensus 82 ~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~~~~ 161 (636)
T TIGR03117 82 FFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVTLAI 161 (636)
T ss_pred EEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhhccc
Confidence 7666542100
Q ss_pred ----------HHHHh---cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhh
Q 013623 389 ----------QLENL---QEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 389 ----------q~~~L---~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
..+.. ...+||||++..-|...++.+.--|....+|||||||+|++..
T Consensus 162 ~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d~A 222 (636)
T TIGR03117 162 REDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQNI 222 (636)
T ss_pred cCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHHHH
Confidence 00000 1346999999998888776644456678999999999998644
No 85
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.31 E-value=1.2e-11 Score=139.25 Aligned_cols=134 Identities=15% Similarity=0.269 Sum_probs=98.6
Q ss_pred CCCCCCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi 361 (439)
.|| .+.+-|.+....+. .++++++.|+||||||++|++|++... .+.++||++||++|++|+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHH
Confidence 355 47888998555543 678899999999999999999988643 245899999999999999
Q ss_pred H-HHHHhhhcCCCCceEEEEECCCChHHH-----------------------------------------------HHH-
Q 013623 362 L-SNCRSLSKCGVPFRSMVVTGGFRQKTQ-----------------------------------------------LEN- 392 (439)
Q Consensus 362 ~-~~l~~L~k~~~~i~v~~l~Gg~~~~~q-----------------------------------------------~~~- 392 (439)
. +.+..|.+. .++++.++.|+.++-.. +..
T Consensus 308 ~~~~i~~l~~~-~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 308 MAEEVKAIQEV-FHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHh-cCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 4 667777764 66777777776522100 000
Q ss_pred -----------------------hcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhh
Q 013623 393 -----------------------LQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 393 -----------------------L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
-...+||||+...-|+..+..+. .+....+|||||||+|++.
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~ 451 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQ 451 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHH
Confidence 01235899999988887765543 3667899999999999853
No 86
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.25 E-value=2.2e-11 Score=110.01 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=88.7
Q ss_pred CCCHHHHHHhhhHhc-------CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVE-------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLs-------GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
.|++.|.+++..++. .+++++.++||||||.+++..+..... ++||++|+..|+.|..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------------ceeEecCHHHHHHHHH
Confidence 478999999999883 689999999999999988754444331 7899999999999999
Q ss_pred HHHHhhhcCCCCceEEE------------EECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCC-----------CCCC
Q 013623 363 SNCRSLSKCGVPFRSMV------------VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-----------LQLI 419 (439)
Q Consensus 363 ~~l~~L~k~~~~i~v~~------------l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~-----------l~L~ 419 (439)
+.+..+... ...... ..................+|++.|...|........ ....
T Consensus 68 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 68 DEFDDFGSE--KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp HHHHHHSTT--SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred HHHHHhhhh--hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 999666541 111111 111111112222334568999999999998876522 2234
Q ss_pred CcccEEEeCCccchhh
Q 013623 420 NLRWYARTASLNIESH 435 (439)
Q Consensus 420 ~Lr~LVlDEAD~fe~~ 435 (439)
...+||+||||++...
T Consensus 146 ~~~~vI~DEaH~~~~~ 161 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSD 161 (184)
T ss_dssp SESEEEEETGGCTHHH
T ss_pred cCCEEEEehhhhcCCH
Confidence 5789999999998764
No 87
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.24 E-value=2.5e-11 Score=130.78 Aligned_cols=134 Identities=16% Similarity=0.270 Sum_probs=103.9
Q ss_pred HHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 281 ESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 281 ~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
..|++ +||..+.+-|.++|..+++|+|+++..|||.||++||.+|++-. .-.+|||.|..+|.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------------CCCEEEECchHHHHH
Confidence 44644 69999999999999999999999999999999999999998854 115799999999988
Q ss_pred HHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---hcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 360 Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.+.+.++.. ++.+..+.+..+..+.... +.. ..+||.-+|++|..---...+.-..+.++||||||.+.+
T Consensus 72 DQV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSq 145 (590)
T COG0514 72 DQVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQ 145 (590)
T ss_pred HHHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhh
Confidence 777777654 5788888877666554332 333 389999999998543222223345589999999997764
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.21 E-value=2.5e-11 Score=136.60 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcC
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvP 353 (439)
+|.+-..++ .|...+.+||+.....++.+ .|+++|||||+|||...++.+|+.+..... .........+++++++|
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r-~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLR-EDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccc-cccceecccceEEEEee
Confidence 555555565 45667999999999999965 699999999999999999999999866532 11233345679999999
Q ss_pred cHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC---CCCCcccEEEeCCc
Q 013623 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL---QLINLRWYARTASL 430 (439)
Q Consensus 354 TrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l---~L~~Lr~LVlDEAD 430 (439)
++.|++.+...|.+-.. ..+|+|.-++|+.....+.. .+.+|||+||+++ |.+.++.- ..+-++++|+||.|
T Consensus 373 mKaLvqE~VgsfSkRla-~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLA-PLGITVLELTGDSQLGKEQI---EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred HHHHHHHHHHHHHhhcc-ccCcEEEEecccccchhhhh---hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhh
Confidence 99999998776655544 47899999999987543321 2478999999996 55555433 23458999999999
Q ss_pred cch
Q 013623 431 NIE 433 (439)
Q Consensus 431 ~fe 433 (439)
++-
T Consensus 448 LLh 450 (1674)
T KOG0951|consen 448 LLH 450 (1674)
T ss_pred hcc
Confidence 883
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=5.8e-11 Score=127.17 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=78.3
Q ss_pred EEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHH
Q 013623 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (439)
Q Consensus 309 li~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~ 388 (439)
|+.++||||||.+|+..+...+. .+.++|||+|+++|+.|+++.+++.+ +..+.+++++.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------------~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------------LGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHH
Confidence 46899999999999766544442 24589999999999999999998753 356778888876654
Q ss_pred HHH---Hhc-CCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 389 QLE---NLQ-EGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 389 q~~---~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
... .+. ..++|+|||+..+. ..+.++++|||||+|.+.
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~s 106 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSS 106 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccc
Confidence 433 333 35899999999773 346789999999998764
No 90
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.18 E-value=1.1e-10 Score=126.35 Aligned_cols=142 Identities=20% Similarity=0.339 Sum_probs=118.2
Q ss_pred CCCHHHHHHH-HHCCCCCCCHHHHHHhhhHhcC------CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 274 GCSDYMIESL-KRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 274 gL~~~Ll~aL-~~~gf~~pTpIQ~~aIP~iLsG------rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
.....+++.+ ..+.| .+|..|.++|..|+.. .+-++++--|||||++.++.++..+. .|.
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------------~G~ 312 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------------AGY 312 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------------cCC
Confidence 3445556555 56677 5999999999999854 36799999999999999999998883 578
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH---HHHhcCC-CcEEEEChHHHHHHHHhCCCCCCCcc
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQEG-VDVLIATPGRFMFLIKEGILQLINLR 422 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q---~~~L~~g-~dILVaTPgrLldlL~~~~l~L~~Lr 422 (439)
++..++||--||.|.+..+.+++. ..++++.+++|....... ...+.+| .||+|||. .|-+..+.|+++.
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~Lg 386 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLG 386 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeeccee
Confidence 999999999999999999999998 478999999998876554 4444555 99999994 4556778999999
Q ss_pred cEEEeCCccchh
Q 013623 423 WYARTASLNIES 434 (439)
Q Consensus 423 ~LVlDEAD~fe~ 434 (439)
++|+||-|.|.-
T Consensus 387 LVIiDEQHRFGV 398 (677)
T COG1200 387 LVIIDEQHRFGV 398 (677)
T ss_pred EEEEeccccccH
Confidence 999999999974
No 91
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.17 E-value=8.5e-11 Score=120.89 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=96.1
Q ss_pred HHHHHHHH-CCCCC-CCHHHHHHhhhHhcC-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc
Q 013623 278 YMIESLKR-QNFLR-PSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (439)
Q Consensus 278 ~Ll~aL~~-~gf~~-pTpIQ~~aIP~iLsG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT 354 (439)
.+..+|++ +|+.. -|+.|.+|+.++..+ +||.++.|||+||+|||.||.|-+ +...||+.|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------------~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------------GGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------------CCeEEEehHH
Confidence 45567755 57755 489999999998865 699999999999999999998843 2277999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH------HHHhcCCCcEEEEChHHH-----HHHHHhCCCCCCCccc
Q 013623 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ------LENLQEGVDVLIATPGRF-----MFLIKEGILQLINLRW 423 (439)
Q Consensus 355 rELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q------~~~L~~g~dILVaTPgrL-----ldlL~~~~l~L~~Lr~ 423 (439)
.+|.+.+.+.+..|. +++..+....+..+. +.+.+....||..||+.- -++| ++..+-+.|.|
T Consensus 71 iALIkDQiDHL~~LK-----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lL-n~L~~r~~L~Y 144 (641)
T KOG0352|consen 71 IALIKDQIDHLKRLK-----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLL-NGLANRDVLRY 144 (641)
T ss_pred HHHHHHHHHHHHhcC-----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHH-HHHhhhceeee
Confidence 999888777777653 444444444433332 222245678999999752 2232 33444455899
Q ss_pred EEEeCCccch
Q 013623 424 YARTASLNIE 433 (439)
Q Consensus 424 LVlDEAD~fe 433 (439)
||+||||...
T Consensus 145 ~vVDEAHCVS 154 (641)
T KOG0352|consen 145 IVVDEAHCVS 154 (641)
T ss_pred EEechhhhHh
Confidence 9999998654
No 92
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.10 E-value=5.8e-10 Score=127.30 Aligned_cols=133 Identities=19% Similarity=0.225 Sum_probs=95.9
Q ss_pred CCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH--
Q 013623 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS-- 363 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~-- 363 (439)
.+.+-|.+.+..+. .++++++.|+||+|||++||+|++..... .+-++||.++|+.|..|+..
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-----------~~~~vvIsT~T~~LQ~Ql~~kD 325 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK-----------KEEPVVISTYTIQLQQQLLEKD 325 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc-----------cCCeEEEEcCCHHHHHHHHHhh
Confidence 67899999766654 67899999999999999999999876643 24579999999999999876
Q ss_pred --HHHhhhcCCCCceEEEEECCCChHH---------------H-------------------------------------
Q 013623 364 --NCRSLSKCGVPFRSMVVTGGFRQKT---------------Q------------------------------------- 389 (439)
Q Consensus 364 --~l~~L~k~~~~i~v~~l~Gg~~~~~---------------q------------------------------------- 389 (439)
.++++. +.+++++++.|..++-. +
T Consensus 326 iP~L~~~~--~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~ 403 (928)
T PRK08074 326 IPLLQKIF--PFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIA 403 (928)
T ss_pred HHHHHHHc--CCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhh
Confidence 344443 24677777776543100 0
Q ss_pred ---------------------HHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhh
Q 013623 390 ---------------------LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 390 ---------------------~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
.+.-...+||||+...-|+..+..+.--|..-.++||||||+|++.
T Consensus 404 ~~~~~c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d~ 470 (928)
T PRK08074 404 SDGESDGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEEA 470 (928)
T ss_pred ccCcccCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHHH
Confidence 0000123579999999887776444334566799999999999964
No 93
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.09 E-value=3e-10 Score=128.46 Aligned_cols=136 Identities=20% Similarity=0.272 Sum_probs=104.0
Q ss_pred HHHHHH-HHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH
Q 013623 278 YMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (439)
Q Consensus 278 ~Ll~aL-~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE 356 (439)
+++..| ..+|+..+.+-|.++|..++.|+|+++..|||.||.+||.||++- .+...|||.|...
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------------~~gitvVISPL~S 315 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------------LGGVTVVISPLIS 315 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------------cCCceEEeccHHH
Confidence 455555 568999999999999999999999999999999999999999873 2337899999999
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEECCCChHHHH---HHhcC---CCcEEEEChHHHHHH--HHhCCCCCCC---cccEE
Q 013623 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQE---GVDVLIATPGRFMFL--IKEGILQLIN---LRWYA 425 (439)
Q Consensus 357 LA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~---~~L~~---g~dILVaTPgrLldl--L~~~~l~L~~---Lr~LV 425 (439)
|.+ +++..|.+ .+|....+.++....++. ..+.. .++||.-||+++... +.+...+|.. +.++|
T Consensus 316 Lm~---DQv~~L~~--~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~v 390 (941)
T KOG0351|consen 316 LMQ---DQVTHLSK--KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFV 390 (941)
T ss_pred HHH---HHHHhhhh--cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEE
Confidence 955 45555544 678999999888775442 23332 589999999998642 2222334444 89999
Q ss_pred EeCCccch
Q 013623 426 RTASLNIE 433 (439)
Q Consensus 426 lDEAD~fe 433 (439)
|||||...
T Consensus 391 IDEAHCVS 398 (941)
T KOG0351|consen 391 IDEAHCVS 398 (941)
T ss_pred ecHHHHhh
Confidence 99997544
No 94
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.09 E-value=2.5e-10 Score=129.03 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=109.8
Q ss_pred HHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 283 L~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
....+| .|-++|++++-++..|..|+++||||+|||++.-.++...+.. +-++++.+|.++|.+|.+
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------------~qrviYTsPIKALsNQKy 179 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------------GQRVIYTSPIKALSNQKY 179 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------------CCceEeccchhhhhhhHH
Confidence 355676 4789999999999999999999999999999987777766643 346999999999999999
Q ss_pred HHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhhc
Q 013623 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHFS 437 (439)
Q Consensus 363 ~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~~ 437 (439)
+.+...... ..-.+.+++|+... +..+.|+|.|-+-|-.++.++...+..+.+||+||+|.+.+-.+
T Consensus 180 rdl~~~fgd-v~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eR 246 (1041)
T COG4581 180 RDLLAKFGD-VADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRER 246 (1041)
T ss_pred HHHHHHhhh-hhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccccc
Confidence 988766431 11235778888764 35688999999999999999988999999999999998766443
No 95
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.3e-09 Score=108.98 Aligned_cols=72 Identities=28% Similarity=0.311 Sum_probs=57.1
Q ss_pred CCHHHHHHhhh----HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 291 PSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 291 pTpIQ~~aIP~----iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
|+|.|.+.+.. +..|.++++.||||+|||++|++|++..+..... ...+.+++|+++|..+..|....++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHHHHHH
Confidence 59999995544 4578999999999999999999999987754321 0123578999999999999887777
Q ss_pred hh
Q 013623 367 SL 368 (439)
Q Consensus 367 ~L 368 (439)
++
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 96
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.3e-09 Score=108.98 Aligned_cols=72 Identities=28% Similarity=0.311 Sum_probs=57.1
Q ss_pred CCHHHHHHhhh----HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 291 PSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 291 pTpIQ~~aIP~----iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
|+|.|.+.+.. +..|.++++.||||+|||++|++|++..+..... ...+.+++|+++|..+..|....++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHHHHHH
Confidence 59999995544 4578999999999999999999999987754321 0123578999999999999887777
Q ss_pred hh
Q 013623 367 SL 368 (439)
Q Consensus 367 ~L 368 (439)
++
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 97
>PRK09694 helicase Cas3; Provisional
Probab=98.97 E-value=1.7e-09 Score=122.26 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=92.9
Q ss_pred CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
...|+|+|..+........-+++.||||+|||.+.++.+...+ .. ....+++|..||+++++|++..+..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~---------~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ---------GLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh---------CCCCeEEEECcHHHHHHHHHHHHHH
Confidence 4589999998865544566799999999999999877655433 21 2345899999999999999999886
Q ss_pred hhcCC-CCceEEEEECCCChHHHHHH---------------------hc---C---CCcEEEEChHHHHHHHHh-CCCCC
Q 013623 368 LSKCG-VPFRSMVVTGGFRQKTQLEN---------------------LQ---E---GVDVLIATPGRFMFLIKE-GILQL 418 (439)
Q Consensus 368 L~k~~-~~i~v~~l~Gg~~~~~q~~~---------------------L~---~---g~dILVaTPgrLldlL~~-~~l~L 418 (439)
+.+.. ....+.++.|.......... +. + -..|+|||...++..+-. +...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 54311 13456677766543211100 10 1 168999999888754332 22222
Q ss_pred CC----cccEEEeCCccchhhh
Q 013623 419 IN----LRWYARTASLNIESHF 436 (439)
Q Consensus 419 ~~----Lr~LVlDEAD~fe~~~ 436 (439)
.. -++|||||+|.|...+
T Consensus 434 R~~~La~svvIiDEVHAyD~ym 455 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAYDAYM 455 (878)
T ss_pred HHHhhccCeEEEechhhCCHHH
Confidence 21 2589999999997644
No 98
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.96 E-value=2.5e-09 Score=108.81 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=101.3
Q ss_pred cCCCHHHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEE
Q 013623 273 LGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (439)
Q Consensus 273 lgL~~~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLIL 351 (439)
+..+.+.-+.|++ +..+++.|.|..+|.+.+.|+|++++.|||.||++||.||+|.. ...+|||
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------------dg~alvi 140 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------------DGFALVI 140 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------------CCceEee
Confidence 3445555556643 56788999999999999999999999999999999999998842 2368999
Q ss_pred cCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH--HH-Hh---cCCCcEEEEChHHHHH---HHHh--CCCCCCC
Q 013623 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ--LE-NL---QEGVDVLIATPGRFMF---LIKE--GILQLIN 420 (439)
Q Consensus 352 vPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q--~~-~L---~~g~dILVaTPgrLld---lL~~--~~l~L~~ 420 (439)
+|...|...+.-+++.|+ +....+....+..+. .+ .+ .....+|..||+++.. +|.+ +.+....
T Consensus 141 ~plislmedqil~lkqlg-----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~ 215 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLG-----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGF 215 (695)
T ss_pred chhHHHHHHHHHHHHHhC-----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcce
Confidence 999999888888888774 333344434433321 11 11 2347899999998853 3332 4455667
Q ss_pred cccEEEeCCcc
Q 013623 421 LRWYARTASLN 431 (439)
Q Consensus 421 Lr~LVlDEAD~ 431 (439)
++++-+||+|.
T Consensus 216 ~~~iaidevhc 226 (695)
T KOG0353|consen 216 FKLIAIDEVHC 226 (695)
T ss_pred eEEEeecceee
Confidence 89999999974
No 99
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.93 E-value=7.6e-09 Score=115.62 Aligned_cols=139 Identities=24% Similarity=0.301 Sum_probs=100.3
Q ss_pred HHHHC-CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHH
Q 013623 282 SLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (439)
Q Consensus 282 aL~~~-gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Q 360 (439)
-+.+. || .|+.+|.-.-..++.|+.+-+.||||.|||.--++..+.... .+-+++||+||..|+.|
T Consensus 74 fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~------------kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 74 FFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK------------KGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh------------cCCeEEEEecCHHHHHH
Confidence 34343 55 899999998899999999999999999999755444443332 34689999999999999
Q ss_pred HHHHHHhhhcCCCCceEEE-EECCCChHH---HHHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhh
Q 013623 361 VLSNCRSLSKCGVPFRSMV-VTGGFRQKT---QLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 361 i~~~l~~L~k~~~~i~v~~-l~Gg~~~~~---q~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
+++.+++++.....+.+.+ ..+..+..+ ..+.+.+ +.||+|+|-..|...+.. +.--+.+++++|++|.|...
T Consensus 141 ~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 141 VYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 9999999986322344444 334433333 3444544 599999999888766543 11134789999999987653
No 100
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.92 E-value=5.7e-09 Score=120.79 Aligned_cols=131 Identities=17% Similarity=0.083 Sum_probs=89.1
Q ss_pred CCCCHHHHHHhhhHh----cC-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV----EG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL----sG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
..+.++|..||..+. .| +.++++.+||||||+.. +.++.++... ....++|||+|+++|+.|...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~---------~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA---------KRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc---------CccCeEEEEecHHHHHHHHHH
Confidence 358999999998876 23 67999999999999873 4455555432 234589999999999999999
Q ss_pred HHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh-----CCCCCCCcccEEEeCCccc
Q 013623 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-----GILQLINLRWYARTASLNI 432 (439)
Q Consensus 364 ~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~-----~~l~L~~Lr~LVlDEAD~f 432 (439)
.|..+... .......+++....... .......|+|+|..+|...+.. ....+...++||+||||.-
T Consensus 482 ~F~~~~~~-~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 482 AFKDTKIE-GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred HHHhcccc-cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 99876321 11111112221111111 1123578999999998776532 1245677889999999973
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.92 E-value=2.2e-09 Score=113.28 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=84.6
Q ss_pred CCCCHHHHHHhhhHhc----CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLs----GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..|.++|.+++..+.. .+..+++.|||+|||..++..+.... ..+|||||+++|+.|-.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~---------------~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK---------------RSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc---------------CCEEEEECcHHHHHHHHHH
Confidence 4689999999999997 89999999999999987654443221 2389999999999999876
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+..... ....+..+.|+.... .. ..|.|+|-..+...-....+..+...+||+||||++..
T Consensus 100 ~~~~~~--~~~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a 160 (442)
T COG1061 100 LKKFLL--LNDEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA 160 (442)
T ss_pred HHHhcC--CccccceecCceecc------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc
Confidence 666543 121233333332211 11 46999998776553211223334689999999998874
No 102
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.89 E-value=3.7e-09 Score=122.56 Aligned_cols=109 Identities=20% Similarity=0.257 Sum_probs=72.0
Q ss_pred HhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEE--cC----cHHHHHHHHHHHHh-hhc
Q 013623 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL--AP----TAELASQVLSNCRS-LSK 370 (439)
Q Consensus 298 aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLIL--vP----TrELA~Qi~~~l~~-L~k 370 (439)
.+..+..++.++|+|+||||||. .+|.+..-. ..+..+.|+ -| +++||.||.+.+.. ++.
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~-----------g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTT--QLPKICLEL-----------GRGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHc-----------CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 34444556678888999999999 678442211 011222333 24 68999999998875 333
Q ss_pred CCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 371 ~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
..++.+ ....+ ...+++|+|+|||+|++.+.... .|+.+++|||||||.
T Consensus 149 -~VGY~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHE 197 (1294)
T PRK11131 149 -CVGYKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHE 197 (1294)
T ss_pred -eeceee-------cCccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccc
Confidence 123322 11112 13468999999999999998664 489999999999994
No 103
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.89 E-value=1.6e-08 Score=115.06 Aligned_cols=139 Identities=22% Similarity=0.224 Sum_probs=111.6
Q ss_pred CHHHHHHH-HHCCCCCCCHHHHHHhhhHhc----C--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeE
Q 013623 276 SDYMIESL-KRQNFLRPSQIQAMAFPPVVE----G--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (439)
Q Consensus 276 ~~~Ll~aL-~~~gf~~pTpIQ~~aIP~iLs----G--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~a 348 (439)
+.+....+ ..+.|. -|+-|..||..+.+ + .|-|+|+--|=|||-+.+=+++-.+. .|.++
T Consensus 580 d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------------~GKQV 646 (1139)
T COG1197 580 DTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------------DGKQV 646 (1139)
T ss_pred ChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------------CCCeE
Confidence 44445555 335664 69999999999884 3 48999999999999998888777663 46799
Q ss_pred EEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHH---HhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccE
Q 013623 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQE-GVDVLIATPGRFMFLIKEGILQLINLRWY 424 (439)
Q Consensus 349 LILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~---~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~L 424 (439)
.|||||--||+|.++.|+.-++ ++++++..+.-=.+.+++.. .+.. .+||||||.- |-.+.+.++++.+|
T Consensus 647 AvLVPTTlLA~QHy~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLl 720 (1139)
T COG1197 647 AVLVPTTLLAQQHYETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLL 720 (1139)
T ss_pred EEEcccHHhHHHHHHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeE
Confidence 9999999999999999998887 68999999887666666644 3444 4999999933 44677889999999
Q ss_pred EEeCCccch
Q 013623 425 ARTASLNIE 433 (439)
Q Consensus 425 VlDEAD~fe 433 (439)
||||-|.|.
T Consensus 721 IIDEEqRFG 729 (1139)
T COG1197 721 IIDEEQRFG 729 (1139)
T ss_pred EEechhhcC
Confidence 999999986
No 104
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.88 E-value=9.7e-09 Score=113.85 Aligned_cols=125 Identities=16% Similarity=0.173 Sum_probs=103.3
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
...| .|-..|.+||-++..|..|+|.|+|.+|||++.-.++.-.- ..+.++||-.|-++|.+|-++.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------------~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------------KHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------------hhccceEecchhhhhccchHHH
Confidence 3444 47889999999999999999999999999998655544222 2367899999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
|+..... +.+++|+... +..+.+||.|-+-|-.||.++.--+.++.+||+||+|.+-+
T Consensus 360 Fk~tF~D-----vgLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND 417 (1248)
T KOG0947|consen 360 FKETFGD-----VGLLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIND 417 (1248)
T ss_pred HHHhccc-----cceeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccc
Confidence 9877652 2288998764 34578999999999999999988888999999999996654
No 105
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=2.3e-08 Score=112.14 Aligned_cols=130 Identities=19% Similarity=0.166 Sum_probs=102.9
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+| ..|..+|...--.+..|+ +....||+|||++..+|++-... .|..+.|++||--||.|-+..+
T Consensus 79 lG-m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al------------~G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNAL------------SGKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred hC-CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHH
Confidence 45 578888887654555554 88999999999999999887664 3568899999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
..+..+ .++++.+++++.........+ .+||++||..-| .|+|+.+.. -...+.|+||||+|.+.
T Consensus 144 ~~l~~~-lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 144 RPLYEF-LGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HHHhcc-cCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 999985 789999999888766555443 489999999887 556654422 13678999999999654
No 106
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=1.1e-08 Score=113.22 Aligned_cols=124 Identities=14% Similarity=0.107 Sum_probs=87.3
Q ss_pred CCCCHHHHHHhhhHh-cC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV-EG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL-sG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
..+.++|.+++..++ .| +.-+++.|||+|||+..+..+. .+ +-++|||||+.+|+.|-.+.|
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 458899999998887 34 4689999999999998764433 22 125899999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC--------CCCCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--------ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~--------~l~L~~Lr~LVlDEAD~fe 433 (439)
.++... ....+..++|+.... ......|+|+|...+.....+. .+.-....+||+||||++.
T Consensus 319 ~~~~~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp 388 (732)
T TIGR00603 319 KMWSTI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP 388 (732)
T ss_pred HHhcCC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc
Confidence 987542 334566666654321 1223689999998764332211 1222457899999999875
No 107
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.72 E-value=2.6e-08 Score=108.30 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=105.3
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.+-|.|..||-++-.+..|++.|.|.+|||.+.-.++...+...+ |+|+-.|-++|.+|-|+.+..-+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ------------RVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ------------RVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC------------eEEeeChhhhhcchhHHHHHHHh
Confidence 467899999999999999999999999999999999998886653 89999999999999999887655
Q ss_pred cCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 370 k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+. +.+.+|+..+. ..+-.||.|-+-|-.+|.+|.--+..|.|+|+||+|.+.+
T Consensus 197 ~D-----VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD 249 (1041)
T KOG0948|consen 197 KD-----VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD 249 (1041)
T ss_pred cc-----cceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc
Confidence 42 56778887643 4578999999999999999988888999999999997654
No 108
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.69 E-value=1.5e-07 Score=104.84 Aligned_cols=65 Identities=34% Similarity=0.482 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHhhhHh---c------CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH
Q 013623 287 NFLRPSQIQAMAFPPVV---E------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (439)
Q Consensus 287 gf~~pTpIQ~~aIP~iL---s------GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL 357 (439)
|| .+.+-|.+++..+. . ++.++|.|+||+|||++||+|++...... +-++||-+.|..|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~-----------~k~vVIST~T~~L 90 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE-----------KKKLVISTATVAL 90 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc-----------CCeEEEEcCCHHH
Confidence 44 57888999776654 3 36799999999999999999998766532 3478999999999
Q ss_pred HHHHHH
Q 013623 358 ASQVLS 363 (439)
Q Consensus 358 A~Qi~~ 363 (439)
-.|+..
T Consensus 91 QeQL~~ 96 (697)
T PRK11747 91 QEQLVS 96 (697)
T ss_pred HHHHHh
Confidence 999863
No 109
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.69 E-value=2.8e-08 Score=112.63 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 288 FLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
|....++|.+.++.+. .+.++++.+|+|||||.|..+.++. . ...-++++++|..+.+..+++.+.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~----------~~~~~~vyi~p~~~i~~~~~~~w~ 1207 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P----------DTIGRAVYIAPLEEIADEQYRDWE 1207 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C----------ccceEEEEecchHHHHHHHHHHHH
Confidence 3444899999999988 5668999999999999999888886 1 235589999999999998887765
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+-.....+.+++.++|..+...... ...+|+|+||+++..+ + ....++++|.||.|++.+
T Consensus 1208 ~~f~~~~G~~~~~l~ge~s~~lkl~---~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1208 KKFSKLLGLRIVKLTGETSLDLKLL---QKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred HhhccccCceEEecCCccccchHHh---hhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcc
Confidence 5544457899999999887765432 3468999999997444 3 566799999999998874
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=1.1e-07 Score=104.52 Aligned_cols=130 Identities=17% Similarity=0.155 Sum_probs=104.5
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+| .+|..+|..+.-.++.|+ +....||.|||++..+|++..... |..+.|++|+--||.|-++.+
T Consensus 75 lg-~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~------------G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 75 LG-LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ------------GRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred cC-CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc------------CCCeEEEcCCHHHHHHHHHHH
Confidence 34 478999999998888875 779999999999999998877643 567899999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
..+..+ .++++.++.++....+.... ..|||+.+|..-| .++|+.+.. -...+.|.||||+|.+.
T Consensus 140 ~~ly~~-LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 140 GPLYEA-LGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHHHh-cCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999985 89999999998876654444 3589999999876 345544321 23557899999999654
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=1.3e-07 Score=105.36 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=104.2
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+| ..|.++|..+-=++..|+ +....||+|||++..+|++..... |..+-|++||--||.|-+..+
T Consensus 77 ~g-~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~------------G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 77 LG-LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT------------GKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred hC-CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc------------CCCeEEEeccHHHHHhhHHHH
Confidence 45 478999998776666777 899999999999999998887744 568899999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
..+..+ .++++.+++++.+....... ..|||+.+|...| .++|+.+.. -...+.|.||||+|.+.
T Consensus 142 ~~~~~~-LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 142 GELYRW-LGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHHHh-cCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 999985 78999999988776655444 3689999999877 355654321 23457899999999654
No 112
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.56 E-value=1.9e-07 Score=102.80 Aligned_cols=74 Identities=30% Similarity=0.419 Sum_probs=60.5
Q ss_pred HHCCCCCCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 284 KRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 284 ~~~gf~~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
..+....|.+.|.+++-.+. .++.+++.||||+|||++||+|++...... +..++|.++|+.|-.
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-----------~~~viist~t~~lq~ 77 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-----------GKKVIISTRTKALQE 77 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-----------CCcEEEECCCHHHHH
Confidence 44566789999999886543 456699999999999999999999887653 357899999999999
Q ss_pred HHHHHHHhh
Q 013623 360 QVLSNCRSL 368 (439)
Q Consensus 360 Qi~~~l~~L 368 (439)
|+.+....+
T Consensus 78 q~~~~~~~~ 86 (654)
T COG1199 78 QLLEEDLPI 86 (654)
T ss_pred HHHHhhcch
Confidence 998766554
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.54 E-value=3.3e-07 Score=101.53 Aligned_cols=126 Identities=20% Similarity=0.169 Sum_probs=82.1
Q ss_pred CCHHHHHHhhhHh----c------CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHH
Q 013623 291 PSQIQAMAFPPVV----E------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (439)
Q Consensus 291 pTpIQ~~aIP~iL----s------GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Q 360 (439)
|...|..|+..++ . .+..++..+||||||+..+.-+...+ .. ...+++|||+|..+|..|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~---------~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL---------LKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh---------cCCCeEEEEECcHHHHHH
Confidence 6678989888764 2 24689999999999987644443332 21 346899999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCC--CCCCCc-ccEEEeCCccch
Q 013623 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGI--LQLINL-RWYARTASLNIE 433 (439)
Q Consensus 361 i~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~--l~L~~L-r~LVlDEAD~fe 433 (439)
..+.+..+... .+ .+..+.......+. ....|+|+|..+|...+.... +....- -+||+||||...
T Consensus 309 ~~~~f~~~~~~--~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 309 LMKEFQSLQKD--CA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred HHHHHHhhCCC--CC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc
Confidence 99999887531 01 11112222222332 346899999999986544321 111111 279999999753
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.3e-07 Score=102.84 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=94.6
Q ss_pred CCCCHHHHHHhhhHhcC----CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsG----rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..+++-|..++..+.+. +-.++.+.||||||.+|+-.+-..+.. |-++|||+|-..|..|+.+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~------------GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ------------GKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc------------CCEEEEEeccccchHHHHHH
Confidence 46788999999999855 679999999999999997666666633 56899999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
|+..+. .++.++.++.+..+....+ .....|+|||--.|.- -|++|.+|||||-|.
T Consensus 265 f~~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-------Pf~~LGLIIvDEEHD 324 (730)
T COG1198 265 FKARFG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL-------PFKNLGLIIVDEEHD 324 (730)
T ss_pred HHHHhC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC-------chhhccEEEEecccc
Confidence 998753 6677777777665543333 3568999999665532 356799999999973
No 115
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.46 E-value=5.5e-07 Score=100.83 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=99.7
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+|+ +|.++|..+-=++. +.-+....||.|||+++.+|+.-+.+ .|-.+.|++++..||.+-+.++
T Consensus 73 lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL------------~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNAL------------TGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHh------------cCCceEEEeCCHHHHHHHHHHH
Confidence 465 48888887654443 45689999999999999999864443 2557899999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHH-HHHHhCCC------CCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLl-dlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
..+.++ .++.+.++.++.+....... ..|||+.+|..-|- ++|+.+.. -...+.|.||||+|.+-
T Consensus 138 ~pvy~~-LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 138 GQIYRF-LGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHH-cCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999886 78999999888776654433 46899999997653 55554322 23568899999999654
No 116
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.46 E-value=4.2e-07 Score=101.41 Aligned_cols=132 Identities=22% Similarity=0.252 Sum_probs=97.1
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|-.+|.+.+-.+=.++.++|.|||.+|||.+- .-+++.+... ...-.+|+++||++|++|+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRe---------sD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRE---------SDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhh---------cCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 467789999988889999999999999999753 2344554443 234578999999999999988877665
Q ss_pred cCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh---CCCCCCCcccEEEeCCccch
Q 013623 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE---GILQLINLRWYARTASLNIE 433 (439)
Q Consensus 370 k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~---~~l~L~~Lr~LVlDEAD~fe 433 (439)
....-.+...+.|....+-++. .-.|+|+|+-|+.+..+|.. .......++++|+||+|.+.
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG 645 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIG 645 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcc
Confidence 3223344444455443333322 22699999999999999877 44556889999999999765
No 117
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.45 E-value=1e-06 Score=102.91 Aligned_cols=128 Identities=17% Similarity=0.081 Sum_probs=78.0
Q ss_pred HCCCCCCCHHHHH---HhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH
Q 013623 285 RQNFLRPSQIQAM---AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (439)
Q Consensus 285 ~~gf~~pTpIQ~~---aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi 361 (439)
...|....||... .+..+..++.++++|+||||||. .+|.+..-... ....++++.-|-|--|..+
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~---------~~~~~I~~tQPRRlAA~sv 127 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR---------GSHGLIGHTQPRRLAARTV 127 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC---------CCCceEecCCccHHHHHHH
Confidence 3456666676653 33444456678999999999998 56754321100 1112344445666666666
Q ss_pred HHHHHhhhcCCCCceEEEEECC-CChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 362 LSNCRSLSKCGVPFRSMVVTGG-FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 362 ~~~l~~L~k~~~~i~v~~l~Gg-~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
...+..... ..+...+|. .....+. .....|+|+|||.|+..+.... .|..+++|||||||.
T Consensus 128 A~RvA~elg----~~lG~~VGY~vR~~~~~---s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHE 190 (1283)
T TIGR01967 128 AQRIAEELG----TPLGEKVGYKVRFHDQV---SSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHE 190 (1283)
T ss_pred HHHHHHHhC----CCcceEEeeEEcCCccc---CCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcch
Confidence 655444332 223233332 2222221 3457899999999999987654 488999999999993
No 118
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.44 E-value=1.9e-06 Score=85.57 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=96.6
Q ss_pred CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
-..|.++|..++=.+..|+ ++...||=|||++..+|++-..+ .|-.+-|++.+..||.+=+..+..
T Consensus 75 g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL------------~G~~V~vvT~NdyLA~RD~~~~~~ 140 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL------------QGKGVHVVTSNDYLAKRDAEEMRP 140 (266)
T ss_dssp S----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT------------TSS-EEEEESSHHHHHHHHHHHHH
T ss_pred CCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH------------hcCCcEEEeccHHHhhccHHHHHH
Confidence 3579999999997776776 99999999999998888776653 355789999999999999999999
Q ss_pred hhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHH-HHHHhCCC------CCCCcccEEEeCCccch
Q 013623 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 368 L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLl-dlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
+..+ .++.+.+++.+.......... .++|+.+|...|. ++|+.+.. ....+.++||||||.+-
T Consensus 141 ~y~~-LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 141 FYEF-LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHH-TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHH-hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9985 899999999988765443333 4789999999875 56654321 14678999999998654
No 119
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=2.3e-06 Score=96.12 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=99.4
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.+|..+|...--++..|+ +....||-||||++.+|++-+.+. |..+.||+++-.||.+-.+++..+
T Consensus 84 ~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~------------GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT------------GKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred CCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc------------CCCeEEEeCCHHHHHhHHHHHHHH
Confidence 467888877665555554 889999999999999998876543 457899999999999999999999
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhC------CCCCCCcccEEEeCCccch
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~------~l~L~~Lr~LVlDEAD~fe 433 (439)
..+ .++.+.++.++....... ....|||+.+|+..| .|+|+.+ ......+.|.||||+|.+.
T Consensus 150 y~~-LGLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 150 HRF-LGLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHH-hCCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 886 789999988777655443 346799999999987 3444432 1234668999999999654
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.34 E-value=2.7e-06 Score=94.19 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=91.4
Q ss_pred CCCCHHHHHHhhhHh----cCC-cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL----sGr-Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
..|..+|..||..+. .|+ -+|++..||+|||... +.++.+|.+.. ..-++|+|+-.+.|+.|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~---------~~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG---------WVKRVLFLADRNALVDQAYG 233 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc---------hhheeeEEechHHHHHHHHH
Confidence 467889999998765 454 3999999999999875 66777776542 34489999999999999999
Q ss_pred HHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-----CCCCCCcccEEEeCCcc
Q 013623 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-----ILQLINLRWYARTASLN 431 (439)
Q Consensus 364 ~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-----~l~L~~Lr~LVlDEAD~ 431 (439)
.+..+.-++. .+..+.+... ...++|.|+|-.++...+... .+.....++||+||||.
T Consensus 234 af~~~~P~~~--~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 234 AFEDFLPFGT--KMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred HHHHhCCCcc--ceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh
Confidence 9988865322 2222322111 115899999999999888754 44556689999999983
No 121
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=2.9e-06 Score=94.60 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=58.7
Q ss_pred CCCCCCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi 361 (439)
+-|..+.|.|.+.+..+. .|.++++.||||+|||+|.|.|+|..+.... ..+++++.+.|..=..|+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~---------~~~kIiy~sRThsQl~q~ 76 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP---------EVRKIIYASRTHSQLEQA 76 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc---------ccccEEEEcccchHHHHH
Confidence 456777899999776654 6889999999999999999999998775431 235778888888887888
Q ss_pred HHHHHhh
Q 013623 362 LSNCRSL 368 (439)
Q Consensus 362 ~~~l~~L 368 (439)
.+.++++
T Consensus 77 i~Elk~~ 83 (705)
T TIGR00604 77 TEELRKL 83 (705)
T ss_pred HHHHHhh
Confidence 7777775
No 122
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.26 E-value=3.6e-06 Score=76.33 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCC
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~ 384 (439)
|+=.++-..+|+|||--.+.-++..... .+-++|||.|||.++..+.+.++.+ ++++....-+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-----------~~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~~ 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-----------RRLRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARMR 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-----------TT--EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS-
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-----------ccCeEEEecccHHHHHHHHHHHhcC-----CcccCceeeec
Confidence 4446788899999999877666654433 2458999999999999998888644 23332111100
Q ss_pred ChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 385 ~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
....+.-|=|.|-+.+.+.+.+ ...+.+.+++|+||||-..
T Consensus 68 -------~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~D 108 (148)
T PF07652_consen 68 -------THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTD 108 (148)
T ss_dssp ----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--S
T ss_pred -------cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCC
Confidence 1123456789999998888766 5557889999999999654
No 123
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.25 E-value=6.9e-06 Score=83.43 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=89.3
Q ss_pred CCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
++|+.|..+=..++ +.+++++.|.||+|||-- +.+.++..+. .|.++.|-.|-...+.+++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~-----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN-----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh-----------cCCeEEEecCcccchHHHHHHH
Confidence 68899988766654 568999999999999964 3455555443 3678899999998888888888
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
+.-.. +..+.+++|+.....+ .+++|+|-..|+.+-+. ++++||||+|.|.
T Consensus 165 k~aF~---~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP 215 (441)
T COG4098 165 KQAFS---NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQA-------FDLLIIDEVDAFP 215 (441)
T ss_pred HHhhc---cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHhh-------ccEEEEecccccc
Confidence 76643 4778899998865432 57999999888776543 7899999999885
No 124
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.15 E-value=6.2e-06 Score=80.53 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=69.3
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECC
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg 383 (439)
..+..+++-..|+|||+..+.-+. .+.... .....-.+|||||. .+..|-...+.++.. ...+++....|.
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~-~~~~~v~~~~~~ 94 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFD-PDSLRVIIYDGD 94 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSG-T-TS-EEEESSS
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhhhhhhhccccc-cccccccccccc
Confidence 346789999999999976544433 333221 00111248999999 777788888888875 235666666665
Q ss_pred CChHHHHHHhcCCCcEEEEChHHHH--------HHHHhCCCCCCCcccEEEeCCccch
Q 013623 384 FRQKTQLENLQEGVDVLIATPGRFM--------FLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 384 ~~~~~q~~~L~~g~dILVaTPgrLl--------dlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
..............+|+|+|...+. +.+.. -..++||+||+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 95 SERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLK 147 (299)
T ss_dssp CHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGT
T ss_pred cccccccccccccceeeecccccccccccccccccccc-----ccceeEEEecccccc
Confidence 5122222222346899999999988 23322 237899999999984
No 125
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.07 E-value=9.5e-07 Score=99.32 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=109.0
Q ss_pred CCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 288 FLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
+....|+|.+.+-.+. -..++++.+|||+|||++|.+.++..+... ++-++++++|..+|+..-.+...
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~----------p~~kvvyIap~kalvker~~Dw~ 994 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY----------PGSKVVYIAPDKALVKERSDDWS 994 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC----------CCccEEEEcCCchhhcccccchh
Confidence 4466788988887766 467899999999999999999988777553 45789999999999998888777
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHH--hCCCCCCCcccEEEeCCccchhh
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~--~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
+.... .++++.-++|+...... .+ ...+|+|+||+++..+.+ +..-.+.+|..+|+||.|.+.++
T Consensus 995 ~r~~~-~g~k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 995 KRDEL-PGIKVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred hhccc-CCceeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 76653 48999999999877622 22 248999999999999988 45667888999999999988765
No 126
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.97 E-value=1.5e-05 Score=78.60 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECC-CChHHHHHHhcC-CCcEEEEChHHHHHHHHhCCCCC
Q 013623 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG-FRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQL 418 (439)
Q Consensus 341 ~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg-~~~~~q~~~L~~-g~dILVaTPgrLldlL~~~~l~L 418 (439)
.....|.+|||+.+-.-|..+.+.++.+.. .+..+.-+..- ....+|+..+.. .++|.||||+||..++..+.+.+
T Consensus 122 ~~~gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l 199 (252)
T PF14617_consen 122 KEKGSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSL 199 (252)
T ss_pred cCCCCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCc
Confidence 345789999999998888888888887742 23445445544 477888888864 69999999999999999999999
Q ss_pred CCcccEEEeCC
Q 013623 419 INLRWYARTAS 429 (439)
Q Consensus 419 ~~Lr~LVlDEA 429 (439)
+.+++||||--
T Consensus 200 ~~l~~ivlD~s 210 (252)
T PF14617_consen 200 SNLKRIVLDWS 210 (252)
T ss_pred ccCeEEEEcCC
Confidence 99999999975
No 127
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.81 E-value=8.1e-05 Score=85.95 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=83.1
Q ss_pred CCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.+.++|.+++.-++ .|.+.|++-..|.|||+-. +.++..+.... ......|||||..-| .|=.+.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~--------~~~gp~LIVvP~SlL-~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR--------GITGPHMVVAPKSTL-GNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc--------CCCCCEEEEeChHHH-HHHHHHH
Confidence 56788999887664 5788999999999999864 33444443221 122357999996544 4444445
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHH--h-cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN--L-QEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~--L-~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.++ ...+++..++|.......... + ...++|+|+|.+.+..... .+.--...+|||||||.+-.
T Consensus 239 ~kw---~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN 305 (1033)
T PLN03142 239 RRF---CPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKN 305 (1033)
T ss_pred HHH---CCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCC
Confidence 544 345777777776543322211 1 2458999999988754321 22223468999999998764
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=0.0001 Score=83.00 Aligned_cols=130 Identities=13% Similarity=0.148 Sum_probs=100.3
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+|. +|..+|...--.+..|+ +....||=||||+..+|+.-+.+. |-.+-|++.+--||..=..++
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~------------GkgVhVVTvNdYLA~RDae~m 139 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT------------GKGVIVSTVNEYLAERDAEEM 139 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc------------CCceEEEecchhhhhhhHHHH
Confidence 454 78899988776666665 789999999999999998655433 446788999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
..+..+ .++.+.++..+......... ..|||+.+|..-| .++|+-+.. -...+.|.||||+|.+.
T Consensus 140 g~vy~f-LGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 140 GKVFNF-LGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHHH-hCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 998886 78999988877666544433 4699999999876 456664422 23568899999999764
No 129
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.78 E-value=3.5e-05 Score=86.46 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=111.4
Q ss_pred CCCHHHHHHH-HHCCCCCCCHHHHHHh--hhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEE
Q 013623 274 GCSDYMIESL-KRQNFLRPSQIQAMAF--PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (439)
Q Consensus 274 gL~~~Ll~aL-~~~gf~~pTpIQ~~aI--P~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLI 350 (439)
.+++.+.+.. ...|...+..+|..++ |.++.++|++..+||+.|||++.-+-++..+...+ -.++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r-----------r~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR-----------RNVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh-----------hceeE
Confidence 4566666555 5578999999999976 67889999999999999999999998888776542 25788
Q ss_pred EcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh--CCCCCCCcccEEEeC
Q 013623 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRWYARTA 428 (439)
Q Consensus 351 LvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~--~~l~L~~Lr~LVlDE 428 (439)
+.|--..++.-...+..+.. ..++.+...+|........ +.-+|-|+|-++=..+++. ..-.+..+.+||+||
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~-~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSI-DLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred ecceeehhHHHHhhhhhhcc-ccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 88888888887777777776 4788888888777665432 3468999999886555543 122345589999999
Q ss_pred Cccchh
Q 013623 429 SLNIES 434 (439)
Q Consensus 429 AD~fe~ 434 (439)
.|+|.+
T Consensus 350 lhmi~d 355 (1008)
T KOG0950|consen 350 LHMIGD 355 (1008)
T ss_pred eeeeec
Confidence 999875
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=97.69 E-value=0.00023 Score=79.46 Aligned_cols=138 Identities=20% Similarity=0.288 Sum_probs=92.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHHhhhHhcC-----CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEc
Q 013623 278 YMIESLKRQNFLRPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (439)
Q Consensus 278 ~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG-----rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILv 352 (439)
++-.+|.-..-.+|.|+|+.||...++| |--||. ..|+|||+..| -+.+.+ ...++|+|+
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTsL-kisEal-------------a~~~iL~Lv 213 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTSL-KISEAL-------------AAARILFLV 213 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchHH-HHHHHH-------------hhhheEeec
Confidence 3334444445578999999999998865 223333 45899998653 233333 225789999
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH--------------------HHHh-----cCCCcEEEEChHHH
Q 013623 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ--------------------LENL-----QEGVDVLIATPGRF 407 (439)
Q Consensus 353 PTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q--------------------~~~L-----~~g~dILVaTPgrL 407 (439)
|+..|..|..+.+..-.. .+++...++.+.....- ++.+ ..+--|+.+|-..+
T Consensus 214 PSIsLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl 291 (1518)
T COG4889 214 PSISLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSL 291 (1518)
T ss_pred chHHHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccch
Confidence 999999999888776543 67887777766432211 1111 23456888888877
Q ss_pred HHHHHhCCCCCCCcccEEEeCCccc
Q 013623 408 MFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 408 ldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
..+-.-...-+..++++|.||||.-
T Consensus 292 ~~i~eAQe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 292 PRIKEAQEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred HHHHHHHHcCCCCccEEEecchhcc
Confidence 6665555566778999999999953
No 131
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.65 E-value=6.1e-05 Score=83.61 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=71.5
Q ss_pred CCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHH-
Q 013623 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN- 392 (439)
Q Consensus 314 TGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~- 392 (439)
+|||||..|+-.+-..+.. |-++|||+|...|+.|+...|+..+. ...+.++.++.+..+....
T Consensus 169 ~GSGKTevyl~~i~~~l~~------------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA------------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc------------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHH
Confidence 5999999997666665532 55899999999999999999987753 2457778877766654333
Q ss_pred --hcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc
Q 013623 393 --LQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTASL 430 (439)
Q Consensus 393 --L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD 430 (439)
+.. .+.|+|||-..+. .-+.++.+|||||-|
T Consensus 234 ~~~~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEh 267 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAVF-------APVEDLGLVAIWDDG 267 (665)
T ss_pred HHHhCCCCcEEEEcceeEE-------eccCCCCEEEEEcCC
Confidence 333 4899999966542 245779999999996
No 132
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.63 E-value=8.3e-05 Score=83.53 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=87.8
Q ss_pred CCHHHHHHhhhHhcC---C-cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 291 PSQIQAMAFPPVVEG---K-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 291 pTpIQ~~aIP~iLsG---r-Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
..+.|..++..++.. . .+++.||||.|||.+.+.+++..+... .....+.+++.|++.++.++++.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~~ 267 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRAK 267 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHHH
Confidence 478899999888743 4 789999999999999999998877542 1257899999999999999999999
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHH-----h---------cCCCcEEEEChHHHHHHHHhC-CCC-C--CCcccEEEeC
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLEN-----L---------QEGVDVLIATPGRFMFLIKEG-ILQ-L--INLRWYARTA 428 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~-----L---------~~g~dILVaTPgrLldlL~~~-~l~-L--~~Lr~LVlDE 428 (439)
..... ..+......|.......... . .....++++||-.+....... ... + -....+|+||
T Consensus 268 ~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE 346 (733)
T COG1203 268 EIFGL-FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDE 346 (733)
T ss_pred hhhcc-cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhcc
Confidence 87652 11111112222211111000 0 012456677776655522211 111 1 1247899999
Q ss_pred Cccchhh
Q 013623 429 SLNIESH 435 (439)
Q Consensus 429 AD~fe~~ 435 (439)
+|.+..+
T Consensus 347 ~h~~~~~ 353 (733)
T COG1203 347 VHLYADE 353 (733)
T ss_pred HHhhccc
Confidence 9998865
No 133
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.57 E-value=0.00021 Score=82.13 Aligned_cols=129 Identities=19% Similarity=0.104 Sum_probs=76.5
Q ss_pred CCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
.|.|+|.+..-.++.. .-+|+.-..|.|||+-..+-+-+.+.. ...-++|||||+ .|..|=...+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~----------g~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT----------GRAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc----------CCCCcEEEEcCH-HHHHHHHHHHHH
Confidence 5899999988776643 368999999999998765444433322 123479999997 676665555433
Q ss_pred hhcCCCCceEEEEECCCChHHHHH--HhcCCCcEEEEChHHHHHHHH-hCCCCCCCcccEEEeCCccch
Q 013623 368 LSKCGVPFRSMVVTGGFRQKTQLE--NLQEGVDVLIATPGRFMFLIK-EGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 368 L~k~~~~i~v~~l~Gg~~~~~q~~--~L~~g~dILVaTPgrLldlL~-~~~l~L~~Lr~LVlDEAD~fe 433 (439)
. +++...++.++........ ..-...+++|++-+.+...-. ...+.-...++|||||||++.
T Consensus 221 k----F~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 221 R----FNLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred H----hCCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 2 2344444433321110000 011236899999876653111 011222357999999999985
No 134
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.55 E-value=0.00022 Score=81.54 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=73.7
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh-----hhc--C-CCCceE
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-----LSK--C-GVPFRS 377 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~-----L~k--~-~~~i~v 377 (439)
.|+.+..+||||||.+|+-.++...... +..+.||+||+.+.-..+...++. ++. + +..+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~----------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~ 129 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY----------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIEL 129 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc----------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEE
Confidence 4799999999999999988887665432 345789999999998888766552 111 1 123455
Q ss_pred EEEECCC-------ChHHHHHHhc-------CCCcEEEEChHHHHHHHH-hC---------C-C---CCCCc-ccEEEeC
Q 013623 378 MVVTGGF-------RQKTQLENLQ-------EGVDVLIATPGRFMFLIK-EG---------I-L---QLINL-RWYARTA 428 (439)
Q Consensus 378 ~~l~Gg~-------~~~~q~~~L~-------~g~dILVaTPgrLldlL~-~~---------~-l---~L~~L-r~LVlDE 428 (439)
.++.++. ....++.... +.++|+|.|-+.|..-.. +. . . .+... =.||+||
T Consensus 130 ~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDE 209 (986)
T PRK15483 130 YVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDE 209 (986)
T ss_pred EEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEEC
Confidence 5554332 1122222221 258999999998754211 10 0 0 11122 2688999
Q ss_pred Cccchh
Q 013623 429 SLNIES 434 (439)
Q Consensus 429 AD~fe~ 434 (439)
.|+|..
T Consensus 210 Ph~~~~ 215 (986)
T PRK15483 210 PHRFPR 215 (986)
T ss_pred CCCCCc
Confidence 999964
No 135
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.54 E-value=0.00026 Score=78.22 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=86.3
Q ss_pred CCCHHHHHHhhhH----hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~i----LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.+.++|.+.+.-+ ..|-|.|+.-.-|-|||+- .+.+|.++.... ...||. |||||-.-| ..+.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~-------~~~GPf-LVi~P~StL----~NW~ 233 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK-------GIPGPF-LVIAPKSTL----DNWM 233 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc-------CCCCCe-EEEeeHhhH----HHHH
Confidence 4566777755443 3688999999999999964 355555554422 123443 889998777 4455
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHH-H--hcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLE-N--LQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~-~--L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
..+.++.+++++++++|+......+. . .....+|+|+|-+..+.- +..+.--..+||||||||.+-.
T Consensus 234 ~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN 303 (971)
T KOG0385|consen 234 NEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKN 303 (971)
T ss_pred HHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcc
Confidence 66666668899999999874433322 1 134689999998876432 1222223479999999997754
No 136
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.49 E-value=0.00013 Score=69.01 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=44.5
Q ss_pred CCCHHHHHHhhhHhcCC--cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGr--Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
++++-|..++-.++... -++++++.|||||.+ +-.+...... .+.++++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~--l~~~~~~~~~----------~g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL--LKALAEALEA----------AGKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH--HHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH--HHHHHHHHHh----------CCCeEEEECCcHHHHHHHHHhh
Confidence 36788999999998544 477889999999953 3333333332 2568999999999988876663
No 137
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.38 E-value=0.00031 Score=80.09 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=95.9
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..|..+|...=-.+..|+ +....||=||||+..+|+.-+.+. |--+-|++-+--||..=.+++..+
T Consensus 137 m~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~------------G~gVHvVTvNDYLA~RDaewm~p~ 202 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT------------GRGVHVVTVNDYLAQRDKEWMNPV 202 (1025)
T ss_pred ccccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc------------CCCcEEEeechHhhhhhHHHHHHH
Confidence 357777776554555555 788999999999999998766654 335678888999999999999999
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
..+ .++.+.|+..+...... +-...|||..+|..-| .|+|+-+.. -...+.|.||||+|.+.
T Consensus 203 y~f-lGLtVg~i~~~~~~~~R--r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 203 FEF-HGLSVGVILNTMRPEER--REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHH-hCCeeeeeCCCCCHHHH--HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 886 78999988765554433 3446799999999766 456654321 23557899999999654
No 138
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.31 E-value=0.0015 Score=73.26 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=35.4
Q ss_pred CCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQ 332 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~ 332 (439)
.|++.|...+..++ ...+.++.+|||||||++.|...|.....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~ 67 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQH 67 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHH
Confidence 47889988877766 45789999999999999999888876644
No 139
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.23 E-value=0.0019 Score=71.65 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred CCCCHHHHHHhhhHhcC-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 289 LRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
..++..|..|+..++.. ..++|.+|+|||||... ..++..+.. .+.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~-----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK-----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH-----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35688999999998876 67889999999999543 333333322 245899999999999998887765
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.20 E-value=0.0012 Score=73.39 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=87.0
Q ss_pred CCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 291 PSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 291 pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
+-++|.-.+.-++ .+-+-|+.-.-|-||| |=+++.+..+.+... .|| -|||||..-| -++++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-iQvIaFlayLkq~g~--------~gp-HLVVvPsSTl----eNWlr 465 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-IQVIAFLAYLKQIGN--------PGP-HLVVVPSSTL----ENWLR 465 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcch-hHHHHHHHHHHHcCC--------CCC-cEEEecchhH----HHHHH
Confidence 4456766655432 4556788889999999 456677777765432 233 3889998776 66888
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHH-HhCCCCCCCcccEEEeCCccchh
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLI-KEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL-~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++.++.+.+++...+|......+++.. ...++|||+|-.-...-= .+..+.-.++.++|+||+|++-.
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN 538 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN 538 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc
Confidence 888888889999999988666554433 236899999965332000 01112224478999999998753
No 141
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.15 E-value=0.0022 Score=70.23 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=62.8
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..++..++.-|..|+.++|...=.||++|+|+|||..-.--+++.+ +. ....+||.+|+.--+.|+...
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~-~~----------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA-RQ----------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH-Hh----------cCCceEEEcccchhHHHHHHH
Confidence 4567788889999999999988899999999999987644444443 32 356789999999999998877
Q ss_pred HHhhhcCCCCceEEEEEC
Q 013623 365 CRSLSKCGVPFRSMVVTG 382 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~G 382 (439)
+.+. +++++.++.
T Consensus 474 Ih~t-----gLKVvRl~a 486 (935)
T KOG1802|consen 474 IHKT-----GLKVVRLCA 486 (935)
T ss_pred HHhc-----CceEeeeeh
Confidence 7653 466655543
No 142
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.15 E-value=0.0016 Score=70.69 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=51.2
Q ss_pred CCCHHHHHHhhhHhcCCc-EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrD-vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.+.+-|.+|+...+..++ .++++|+|||||.....-+.+.+.. +-++||.+||.+-+.-|.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~------------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ------------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc------------CCeEEEEcCchHHHHHHHHHh
Confidence 456679999999988766 6889999999998876666666543 348999999999988888754
No 143
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.12 E-value=0.0014 Score=69.67 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCCHHHHHHhhhHh-cC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV-EG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL-sG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
..+.|+|..++..+. +| |.=+|.-|.|+|||++-+-+++. + .-+|||||.+.--+.|-..++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i--------------kK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I--------------KKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e--------------cccEEEEecCccCHHHHHHHH
Confidence 457789999999988 33 57788899999999998665542 2 236899999999999988888
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHH-------------HHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR-------------FMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgr-------------LldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
..++.- .+-.++.++.+... ....++.|+|+|-.. ++++|+. ....++||||+|..
T Consensus 366 k~wsti-~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~-----~EWGllllDEVHvv 434 (776)
T KOG1123|consen 366 KQWSTI-QDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG-----REWGLLLLDEVHVV 434 (776)
T ss_pred Hhhccc-CccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc-----CeeeeEEeehhccc
Confidence 877652 34456666655432 234679999999743 3444433 33689999999965
Q ss_pred h
Q 013623 433 E 433 (439)
Q Consensus 433 e 433 (439)
.
T Consensus 435 P 435 (776)
T KOG1123|consen 435 P 435 (776)
T ss_pred h
Confidence 4
No 144
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.08 E-value=0.0012 Score=61.43 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=50.8
Q ss_pred CCHHHHHHhhhHhcCCc-EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 291 PSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 291 pTpIQ~~aIP~iLsGrD-vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
+++-|.+||..+++... .+|.+|+|||||.. +..++..+..... ......+.++||++||..-+.++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999999998 99999999999943 3334444421100 01124577899999999999999999888
No 145
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.05 E-value=0.00074 Score=64.76 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH
Q 013623 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL 357 (439)
+...|.-|..++.+++...-+++.+|.|||||+..+..+++.+.... --+.+|.-|+-+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~----------~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE----------YDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-----------SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC----------CcEEEEEecCCCC
Confidence 34568899999999998888999999999999999888888886533 2356777676543
No 146
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0022 Score=72.78 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=66.4
Q ss_pred hhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEE
Q 013623 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (439)
Q Consensus 299 IP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~ 378 (439)
+.++-...=++|.++||||||...-.-+++... ..+-...+.=|-|--|.-+...+...+....+-.|.
T Consensus 59 ~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 59 LKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 334445667899999999999753333333221 122244455566655555555544433321221221
Q ss_pred EEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc
Q 013623 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASL 430 (439)
Q Consensus 379 ~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD 430 (439)
.-+-.. ........|-+.|-|.|+..+..... |+.+++||+||+|
T Consensus 128 Y~iRfe------~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaH 172 (845)
T COG1643 128 YSIRFE------SKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAH 172 (845)
T ss_pred EEEEee------ccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchh
Confidence 111000 01122357999999999999876554 8889999999998
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.00 E-value=0.00082 Score=76.94 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=92.2
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|..+|...=-.+..|+ +....||=||||+..+|+.-+.+. |--+-|++.+--||..=..++..+.
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~------------GkgVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALT------------GNGVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHc------------CCCcEEEEechhhhhccHHHHHHHH
Confidence 46666665443444454 889999999999999998877654 3356788889999999999998888
Q ss_pred cCCCCceEEEEEC-CCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 370 KCGVPFRSMVVTG-GFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 370 k~~~~i~v~~l~G-g~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
.+ .++.+.++.. ..... .++-...|||..+|..-| .|+|+-+.. -...+.|.||||+|.+.
T Consensus 235 ~f-LGLsvg~i~~~~~~~~--~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 235 EF-HGLSVDCIDKHQPNSE--ARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HH-hCCceeecCCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 86 7889888765 32333 333446799999999766 456654322 23458899999999754
No 148
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.0022 Score=68.73 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=93.2
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCC-CCCc--ceeehhHHHHHHHHHHhhccCC-------------------CCCCCC
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQS-GSGK--TLAYLLPVIQRLRQEELQGLSK-------------------STSGSP 346 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApT-GSGK--TlaylLPiL~~l~~~~~~~~~~-------------------~~~~gp 346 (439)
..+|+.|.+.+-.+.+.+|++..-.| +.|+ +-.|++-+|+++.+.+..-+.. .-...|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 56899999999999999998754322 3444 5679999999987643221100 012359
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCc-eE------------------------------EEEECCCCh--------H
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPF-RS------------------------------MVVTGGFRQ--------K 387 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i-~v------------------------------~~l~Gg~~~--------~ 387 (439)
++|||||+||-|-.|.+.+..++. +.+- ++ .++.|.+.- .
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~-G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLS-GDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhc-CccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 999999999999999999988842 1110 10 111111110 0
Q ss_pred HHHHHh---cCCCcEEEEChHHHHHHHHh---C--CC-CCCCcccEEEeCCccch
Q 013623 388 TQLENL---QEGVDVLIATPGRFMFLIKE---G--IL-QLINLRWYARTASLNIE 433 (439)
Q Consensus 388 ~q~~~L---~~g~dILVaTPgrLldlL~~---~--~l-~L~~Lr~LVlDEAD~fe 433 (439)
....+| -...|||||.|=-|--++.+ + .+ .|+.+.++|||.||.|.
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l 428 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML 428 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH
Confidence 011111 14589999999888777763 1 22 36889999999998765
No 149
>PF13245 AAA_19: Part of AAA domain
Probab=96.92 E-value=0.0023 Score=51.79 Aligned_cols=59 Identities=22% Similarity=0.365 Sum_probs=39.6
Q ss_pred hhhHhcCCc-EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 299 FPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 299 IP~iLsGrD-vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
|-..+.+.. ++|.++.|||||...+--+...+.... .. +-+++|++||+..+.++.+.+
T Consensus 3 v~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-------~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 3 VRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-------DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-------CC-CCeEEEECCCHHHHHHHHHHH
Confidence 333334444 555999999999665444444442111 12 568999999999999998888
No 150
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.75 E-value=0.026 Score=55.04 Aligned_cols=151 Identities=18% Similarity=0.220 Sum_probs=91.3
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhc---CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLs---GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
.|.-+-.|.+++-.+.. ++ -..+.|.+....+.+ |+|.+.+.-.|-|||.+ ++|++..+..+ ..
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd----------g~ 70 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD----------GS 70 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC----------CC
Confidence 45555556676655532 32 467889988877774 68999999999999976 68888777653 23
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCC--ceEEEEECCCChHH----HH----HHhcCCCcEEEEChHHHHHHHHhC-
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQKT----QL----ENLQEGVDVLIATPGRFMFLIKEG- 414 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~--i~v~~l~Gg~~~~~----q~----~~L~~g~dILVaTPgrLldlL~~~- 414 (439)
..+.+++| ++|..|..+.++.-...-.+ +...-+.-...... .+ +.....-.|+|+||+.++.+.-.+
T Consensus 71 ~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 71 RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 45666776 56888888887665431122 22222222222211 11 122234569999999887654321
Q ss_pred ------CC-----------CCCCcccEEEeCCccch
Q 013623 415 ------IL-----------QLINLRWYARTASLNIE 433 (439)
Q Consensus 415 ------~l-----------~L~~Lr~LVlDEAD~fe 433 (439)
.. -|.....=|+||+|..-
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 11 12334456899998543
No 151
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.67 E-value=0.0023 Score=65.61 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=57.9
Q ss_pred EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChH
Q 013623 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~ 387 (439)
++|.+..|||||+..+ -++..+.. ...+..+++++++..|...+...+..-..
T Consensus 4 ~~I~G~aGTGKTvla~-~l~~~l~~---------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------- 56 (352)
T PF09848_consen 4 ILITGGAGTGKTVLAL-NLAKELQN---------SEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------- 56 (352)
T ss_pred EEEEecCCcCHHHHHH-HHHHHhhc---------cccCCceEEEEecchHHHHHHHHHhhhcc-----------------
Confidence 7899999999997643 23333210 12456789999999998888877754420
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 388 ~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.......+..|..+...+..........++||+||||.|-.
T Consensus 57 ------~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 57 ------PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ------cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 00112333344444333332334456688999999987765
No 152
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=96.64 E-value=0.016 Score=64.63 Aligned_cols=144 Identities=18% Similarity=0.223 Sum_probs=87.1
Q ss_pred ccccc-cCCCHHHHHHHHHCCCCCCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCC
Q 013623 268 KSFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (439)
Q Consensus 268 ~sF~e-lgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~ 342 (439)
+.|+. +.+|..|...| .++|+..+.-+. .+.-=|+.-.-|-|||.- ++..|..+....
T Consensus 190 ~~~~~~~~vPg~I~~~L--------f~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~-------- 252 (923)
T KOG0387|consen 190 KKLEGGFKVPGFIWSKL--------FPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSG-------- 252 (923)
T ss_pred ccccccccccHHHHHHh--------hHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcc--------
Confidence 34554 56677766655 457887665543 455567778999999953 233333332210
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCCh------------HHHHHHh-cCCCcEEEEChHHHHH
Q 013623 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ------------KTQLENL-QEGVDVLIATPGRFMF 409 (439)
Q Consensus 343 ~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~------------~~q~~~L-~~g~dILVaTPgrLld 409 (439)
.-.-.||||||..-+ .++++++..+...+++.+++|..+. ..++... ..+.+|+|+|-..|.
T Consensus 253 k~~~paLIVCP~Tii----~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r- 327 (923)
T KOG0387|consen 253 KLTKPALIVCPATII----HQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR- 327 (923)
T ss_pred cccCceEEEccHHHH----HHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc-
Confidence 112468999996544 5566666666678999999876552 1111111 234679999966541
Q ss_pred HHHhCCCCCCCcccEEEeCCccchh
Q 013623 410 LIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 410 lL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+....+.-....|+|+||.|.+..
T Consensus 328 -~~~d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 328 -IQGDDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred -ccCcccccccccEEEecCcccccC
Confidence 111223334479999999998764
No 153
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.58 E-value=0.013 Score=67.00 Aligned_cols=122 Identities=10% Similarity=0.083 Sum_probs=75.8
Q ss_pred CHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh-hhc
Q 013623 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-LSK 370 (439)
Q Consensus 292 TpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~-L~k 370 (439)
+..+.+.|..+.+.+-++|.+.||+|||.=----+|+..... ......|+=-|-|--|--+++.+.. ...
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~---------~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES---------GAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc---------CCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 345777788888899999999999999974333344433322 1334455555776666666654432 221
Q ss_pred CCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc
Q 013623 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASL 430 (439)
Q Consensus 371 ~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD 430 (439)
..+-.+..-.+..+. .....-++.+|-|-|+..|.. .-.+..+.++|+||+|
T Consensus 246 -~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVH 297 (924)
T KOG0920|consen 246 -SLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVH 297 (924)
T ss_pred -ccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEE
Confidence 122122111111111 112367999999999999976 5567889999999998
No 154
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.55 E-value=0.003 Score=61.85 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhc
Q 013623 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (439)
Q Consensus 291 pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k 370 (439)
+|+-|.++|.. ...+++|.|..|||||.+.+.=++..+.... ....+.|+|+.|+..|..+...+..++.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46789998877 6789999999999999876555555443321 2334689999999999999998888654
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.32 E-value=0.021 Score=66.06 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=84.2
Q ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHhhhH--h--cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeE
Q 013623 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPV--V--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (439)
Q Consensus 273 lgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~i--L--sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~a 348 (439)
..++.-|...|++ +|...+.-+ | ++-|=|+.-.-|-|||.- .+.+|.++..++- .=|| -
T Consensus 606 tpvPsLLrGqLRe--------YQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeeg-------nWGP-H 668 (1958)
T KOG0391|consen 606 TPVPSLLRGQLRE--------YQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEG-------NWGP-H 668 (1958)
T ss_pred cCchHHHHHHHHH--------HHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhccc-------CCCC-c
Confidence 3444555555544 465544332 2 345678888999999964 4566666644321 1123 2
Q ss_pred EEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHH-HHh--cCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL-ENL--QEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 349 LILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~-~~L--~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
||||||--+.+ +=-.|.++..++++...+|........ ..+ .+.+||+|+.--.++.-++- +.-.+.+|||
T Consensus 669 LIVVpTsviLn----WEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLv 742 (1958)
T KOG0391|consen 669 LIVVPTSVILN----WEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLV 742 (1958)
T ss_pred eEEeechhhhh----hhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceee
Confidence 88889876633 333344455789999999876443221 112 24589999997776554432 3335589999
Q ss_pred EeCCccch
Q 013623 426 RTASLNIE 433 (439)
Q Consensus 426 lDEAD~fe 433 (439)
||||+++-
T Consensus 743 LDEaqnIK 750 (1958)
T KOG0391|consen 743 LDEAQNIK 750 (1958)
T ss_pred hhhhhhhc
Confidence 99998764
No 156
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.30 E-value=0.037 Score=62.61 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcC
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvP 353 (439)
+++..+......+ ..+++-|..|+..++.+ +-+++.++.|+|||.. +-.+..+... .+.++++++|
T Consensus 338 ~~~~~~~~~l~~~-~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~----------~g~~V~~~Ap 404 (744)
T TIGR02768 338 VSPPIVDAAIDQH-YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA----------AGYRVIGAAL 404 (744)
T ss_pred CCHHHHHHHHhcc-CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh----------CCCeEEEEeC
Confidence 4444444333333 35899999999999874 6689999999999843 3333333222 2568899999
Q ss_pred cHHHHHHHH
Q 013623 354 TAELASQVL 362 (439)
Q Consensus 354 TrELA~Qi~ 362 (439)
|.--|..+.
T Consensus 405 Tg~Aa~~L~ 413 (744)
T TIGR02768 405 SGKAAEGLQ 413 (744)
T ss_pred cHHHHHHHH
Confidence 988776654
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.27 E-value=0.01 Score=68.87 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCCh
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~ 386 (439)
.=+|.=-+|||||+.-+..+ +.+... ...|.++||+-.++|-.|+.+.+..+.... .... ...+.
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A-~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~--~~~~---~~~s~ 339 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLA-RLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVA--FNDP---KAEST 339 (962)
T ss_pred ceEEEeecCCchHHHHHHHH-HHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhh--hhcc---cccCH
Confidence 46777789999998632222 222221 467999999999999999999999987621 1111 33344
Q ss_pred HHHHHHhcCC-CcEEEEChHHHHHHHHhC-CCCCCC-cccEEEeCCccch
Q 013623 387 KTQLENLQEG-VDVLIATPGRFMFLIKEG-ILQLIN-LRWYARTASLNIE 433 (439)
Q Consensus 387 ~~q~~~L~~g-~dILVaTPgrLldlL~~~-~l~L~~-Lr~LVlDEAD~fe 433 (439)
....+.++.+ -.|||+|=.+|-..+... ...+.+ =-.||+||||.-.
T Consensus 340 ~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ 389 (962)
T COG0610 340 SELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ 389 (962)
T ss_pred HHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc
Confidence 4444445544 389999999998888664 111222 2357899999644
No 158
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.024 Score=63.60 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=65.6
Q ss_pred hHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEE-cCcHHHHHHHHH-HHHhhhcCCCCceEE
Q 013623 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL-APTAELASQVLS-NCRSLSKCGVPFRSM 378 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLIL-vPTrELA~Qi~~-~l~~L~k~~~~i~v~ 378 (439)
+|..+-=|+||+.||||||.- +| |.+++..+. ......|-.|=| -|-|--|.-+.. +...|..++..+...
T Consensus 267 aIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~---s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 267 AINENPVVIICGETGSGKTTQ--VP--QFLYEAGFA---SEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HhhcCCeEEEecCCCCCcccc--ch--HHHHHcccC---CccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 333444589999999999963 33 334333221 111122333333 355544444332 334444433344444
Q ss_pred EEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 379 ~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
+-+.+.- .....|...|-|-|+.-|.+ .+.|.....|||||||.
T Consensus 340 IRfd~ti--------~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 340 IRFDGTI--------GEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHE 383 (1172)
T ss_pred EEecccc--------CCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhh
Confidence 4444432 23467999999999887754 45577789999999983
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.14 E-value=0.0074 Score=67.89 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=66.9
Q ss_pred EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChH
Q 013623 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~ 387 (439)
.+|.||.|||||.+.+-++-+.+. ....++|+|+..+.|+.++...++.-.- .++....-..+..+.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----------~~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~i~ 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----------NPDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYIID 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----------CCCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeecccccccc
Confidence 688999999999765443333321 2356899999999999999988875432 123221111111111
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhh
Q 013623 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 388 ~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
....+-|++.-..|..+. .-.+.+.++|||||+.+...|+
T Consensus 119 ------~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL 158 (824)
T PF02399_consen 119 ------GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQL 158 (824)
T ss_pred ------ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHH
Confidence 012567777766665543 2346678999999996555443
No 160
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.06 E-value=0.016 Score=59.98 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=47.7
Q ss_pred CCHHHHHHhhhH------hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH--H
Q 013623 291 PSQIQAMAFPPV------VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV--L 362 (439)
Q Consensus 291 pTpIQ~~aIP~i------LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi--~ 362 (439)
+++-|..++..+ ..+.++++.++-|+|||. ++-.+..... ..+..+++++||.--|..+ .
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~----------~~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLR----------SRGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhc----------cccceEEEecchHHHHHhccCC
Confidence 566788888877 578899999999999984 4444433322 2356789999999888777 3
Q ss_pred HHHHhhh
Q 013623 363 SNCRSLS 369 (439)
Q Consensus 363 ~~l~~L~ 369 (439)
..+..++
T Consensus 70 ~T~hs~f 76 (364)
T PF05970_consen 70 RTIHSFF 76 (364)
T ss_pred cchHHhc
Confidence 4444444
No 161
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.94 E-value=0.03 Score=65.00 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=45.8
Q ss_pred CCCHHHHHHhhhHhcCCc-EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrD-vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
.+++-|.+|+..++.+++ +++.+..|+|||.. +-.+..+... .+.+++.++||---|..+.
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA----------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH----------cCCeEEEecCcHHHHHHHh
Confidence 689999999999998765 68999999999964 3333333221 3678999999988765554
No 162
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.93 E-value=0.043 Score=61.86 Aligned_cols=65 Identities=26% Similarity=0.264 Sum_probs=46.9
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
..+++-|..|+..++.++-+++.++.|||||... -.++..+... .....+++++||..-|.++.+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~---------~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL---------GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc---------CCCceEEEEeCchHHHHHHHH
Confidence 4689999999999998899999999999999532 2233333211 011467889999988876543
No 163
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.89 E-value=0.0092 Score=65.84 Aligned_cols=139 Identities=20% Similarity=0.211 Sum_probs=78.3
Q ss_pred CCHHHHHHhhhHhc-----CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 291 PSQIQAMAFPPVVE-----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 291 pTpIQ~~aIP~iLs-----GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+-|+|..++--++- +.--|+...-|-|||+.-+--+++.-........... ... ..|||||-+-+.+=-.++-
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~-~a~-~TLII~PaSli~qW~~Ev~ 403 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGE-SAS-KTLIICPASLIHQWEAEVA 403 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhccccc-ccC-CeEEeCcHHHHHHHHHHHH
Confidence 45688888866652 2235666778899998755444443322222211111 122 4899999664444344444
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHH----HHHhCC--CCCC--CcccEEEeCCccchh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF----LIKEGI--LQLI--NLRWYARTASLNIES 434 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLld----lL~~~~--l~L~--~Lr~LVlDEAD~fe~ 434 (439)
+++.. --++|.+.+|.....-....++ .+||+|+|-.-+.. -+..+. --|. ....|||||||.+..
T Consensus 404 ~rl~~--n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 404 RRLEQ--NALSVYLYHGPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred HHHhh--cceEEEEecCCccccCCHHHHh-hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 45544 3477777777664332333343 48999999764433 111111 1122 246799999998754
No 164
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.86 E-value=0.022 Score=60.85 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=77.6
Q ss_pred CCCCHHHHHHhhhHhcCC-----cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVVEGK-----SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGr-----Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
..+.|.|.+.+--+.... -=++.-.-|.|||.-.+. .++.+ ..+...|||+|+-+|. |-.+
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIa----Lllae---------~~ra~tLVvaP~VAlm-QW~n 248 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIA----LLLAE---------VDRAPTLVVAPTVALM-QWKN 248 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHH----HHHhc---------cccCCeeEEccHHHHH-HHHH
Confidence 456677877554333222 235667899999954332 22222 1233489999999884 3445
Q ss_pred HHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCC-------------CCCCCc--ccEEEeC
Q 013623 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-------------LQLINL--RWYARTA 428 (439)
Q Consensus 364 ~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~-------------l~L~~L--r~LVlDE 428 (439)
.+..+.. ..+++.+.+|.... ..+..+ .++|++.+|-..+....++.. .-|.++ -.+||||
T Consensus 249 EI~~~T~--gslkv~~YhG~~R~-~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDE 324 (791)
T KOG1002|consen 249 EIERHTS--GSLKVYIYHGAKRD-KNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDE 324 (791)
T ss_pred HHHHhcc--CceEEEEEeccccc-CCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhh
Confidence 5555543 34666666655433 333333 258999999999988887521 123444 3589999
Q ss_pred Cccchh
Q 013623 429 SLNIES 434 (439)
Q Consensus 429 AD~fe~ 434 (439)
||.+-+
T Consensus 325 AH~IK~ 330 (791)
T KOG1002|consen 325 AHNIKD 330 (791)
T ss_pred hccccc
Confidence 998754
No 165
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=95.82 E-value=0.048 Score=61.47 Aligned_cols=137 Identities=17% Similarity=0.157 Sum_probs=81.4
Q ss_pred CCCHHHHHHhhhHhc---CC-------cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 290 RPSQIQAMAFPPVVE---GK-------SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLs---Gr-------Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
.+.|+|.+.+..+.. |. -+++.-..|+|||+-. ++++..++..- +.-..---++|||+|..-+ .
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~----P~~~~~~~k~lVV~P~sLv-~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQF----PQAKPLINKPLVVAPSSLV-N 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhC----cCccccccccEEEccHHHH-H
Confidence 357899999987752 32 2566668899999865 45555544431 0100112568999996533 3
Q ss_pred HHHHHHHhhhcCCCCceEEEEECCCCh--HHH--HHHh---cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQ--KTQ--LENL---QEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 360 Qi~~~l~~L~k~~~~i~v~~l~Gg~~~--~~q--~~~L---~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
-=.+.|.+... ...+....++|.... ..+ +..+ ....-|+|.+-+.+.+.++. +.+..+.+||+||.|.+
T Consensus 312 nWkkEF~KWl~-~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 312 NWKKEFGKWLG-NHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHhcc-ccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc
Confidence 23334444332 135777778887763 111 1111 11235778888887766654 55566899999999987
Q ss_pred hhh
Q 013623 433 ESH 435 (439)
Q Consensus 433 e~~ 435 (439)
-..
T Consensus 389 kN~ 391 (776)
T KOG0390|consen 389 KNS 391 (776)
T ss_pred cch
Confidence 643
No 166
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.0084 Score=64.51 Aligned_cols=66 Identities=32% Similarity=0.445 Sum_probs=49.5
Q ss_pred CCCHHHHHHhhhHhcC-----CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG-----rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.|+--|-+||..+..| +.-.+.+.||||||+.- .-++..+. --+|||+|++-||.|.+..
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~-AnVI~~~~--------------rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTM-ANVIAKVQ--------------RPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHH-HHHHHHhC--------------CCeEEEecchhHHHHHHHH
Confidence 4677788888777644 57888999999999642 11333321 2369999999999999999
Q ss_pred HHhhhc
Q 013623 365 CRSLSK 370 (439)
Q Consensus 365 l~~L~k 370 (439)
++.++.
T Consensus 77 fk~fFP 82 (663)
T COG0556 77 FKEFFP 82 (663)
T ss_pred HHHhCc
Confidence 999964
No 167
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.69 E-value=0.05 Score=60.00 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=48.8
Q ss_pred HHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 293 pIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
..|..|+-.++..+-+++.++.|||||... ..++..+.... .....+++++.+||..-|..+.+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~------~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQS------PKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc------cccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 689999999999999999999999999642 22333332211 001136789999999998887776654
No 168
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.63 E-value=0.028 Score=62.21 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=50.0
Q ss_pred CHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 292 TpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
...|..|+-..+..+-++|.+++|||||..- .-++..+.... .....++++.+||..-|..+.+.+...
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~-------~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA-------DGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc-------CCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 5799999999999999999999999999542 22333332210 012357888999999999888776543
No 169
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.59 E-value=0.037 Score=62.40 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh----c-CCCCceEEEE
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS----K-CGVPFRSMVV 380 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~----k-~~~~i~v~~l 380 (439)
-|+=|...||||||.||+=-|...=.. ..-.+-||+|||.+.-.-++...+.+. + ...+.+.-.+
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~----------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~ 144 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK----------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESY 144 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH----------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEE
Confidence 368888999999999997666543221 234577999999887555433332221 1 1122333333
Q ss_pred ECCCChHHHHHHhcCCCcEEEEChHHHHH------HHHhCCCCC--------------CCc-ccEEEeCCccchh
Q 013623 381 TGGFRQKTQLENLQEGVDVLIATPGRFMF------LIKEGILQL--------------INL-RWYARTASLNIES 434 (439)
Q Consensus 381 ~Gg~~~~~q~~~L~~g~dILVaTPgrLld------lL~~~~l~L--------------~~L-r~LVlDEAD~fe~ 434 (439)
+-+.............|.+|+.|-..+-. ++++..... ..+ -++||||-|.|..
T Consensus 145 i~~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~ 219 (985)
T COG3587 145 IYDEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLG 219 (985)
T ss_pred eechHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhccc
Confidence 22211111222223567788777554422 222211111 122 2789999999986
No 170
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.44 E-value=0.017 Score=62.58 Aligned_cols=144 Identities=8% Similarity=-0.083 Sum_probs=98.1
Q ss_pred HHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHH
Q 013623 281 ESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (439)
Q Consensus 281 ~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Q 360 (439)
..+..+--+....+|..+|..+-.|+++++...|.+||.+||.+..+..+... .....+++.||.++++.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~----------~~s~~~~~~~~~~~~~~ 346 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC----------HATNSLLPSEMVEHLRN 346 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC----------cccceecchhHHHHhhc
Confidence 33455556677789999999999999999999999999999999988766443 23345899999999887
Q ss_pred HHHHHHhhhcCCCCce--EEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC----CCCCcccEEEeCCccchh
Q 013623 361 VLSNCRSLSKCGVPFR--SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL----QLINLRWYARTASLNIES 434 (439)
Q Consensus 361 i~~~l~~L~k~~~~i~--v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l----~L~~Lr~LVlDEAD~fe~ 434 (439)
..+.+......-...+ ++-.+.+........-++.+..+|.+.|......+.-+.. -+-.+.++++||+|.+..
T Consensus 347 ~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~ 426 (1034)
T KOG4150|consen 347 GSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF 426 (1034)
T ss_pred cCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec
Confidence 6654433322111112 2233444444444444567899999999887765543322 233467889999986654
No 171
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.42 E-value=0.11 Score=57.41 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=62.8
Q ss_pred HhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceE
Q 013623 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377 (439)
Q Consensus 298 aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v 377 (439)
.+..+-+++-++++++||||||.= +-+.+.+.. .. ..| ...+--|-|--|.-++..+..=.....+-.|
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG-----~~-~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAG-----FA-SSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcc-----cc-cCC-cEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 444555677899999999999952 233343321 11 112 2444456665555555443322221122111
Q ss_pred --EEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc
Q 013623 378 --MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASL 430 (439)
Q Consensus 378 --~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD 430 (439)
.+-..+.. .....|...|-|.|+.-+... -.|++..+|||||||
T Consensus 128 GY~IRFed~t--------s~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAH 173 (674)
T KOG0922|consen 128 GYTIRFEDST--------SKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAH 173 (674)
T ss_pred eeEEEecccC--------CCceeEEEecchHHHHHHhcC-CccccccEEEEechh
Confidence 11111111 113569999999987765432 347889999999998
No 172
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.17 E-value=0.051 Score=46.55 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=11.8
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
+++.+++.+++|+|||..
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 356789999999999964
No 173
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=94.98 E-value=0.077 Score=61.54 Aligned_cols=135 Identities=19% Similarity=0.104 Sum_probs=81.4
Q ss_pred CCHHHHHHhhhHhc--------CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 291 PSQIQAMAFPPVVE--------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 291 pTpIQ~~aIP~iLs--------GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
-...|-.|+..+.. |==+|-.|.||+|||++=. =|+..+.. ...+.|..|-.-.|.|-.|..
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd---------~~~g~RfsiALGLRTLTLQTG 478 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD---------DKQGARFAIALGLRSLTLQTG 478 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC---------CCCCceEEEEccccceeccch
Confidence 34589999988764 1236778999999998631 12222221 235667788888888888888
Q ss_pred HHHHhhhcCCCCceEEEEECCCChHHHH-------------------------------------------HHhcC----
Q 013623 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQL-------------------------------------------ENLQE---- 395 (439)
Q Consensus 363 ~~l~~L~k~~~~i~v~~l~Gg~~~~~q~-------------------------------------------~~L~~---- 395 (439)
+.+++-... .+=..++++|+....+.. ..+.+
T Consensus 479 da~r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~ 557 (1110)
T TIGR02562 479 HALKTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKE 557 (1110)
T ss_pred HHHHHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhh
Confidence 888776542 122344455543211100 00000
Q ss_pred ----CCcEEEEChHHHHHHHH--h-CCCCCC----CcccEEEeCCccchhhh
Q 013623 396 ----GVDVLIATPGRFMFLIK--E-GILQLI----NLRWYARTASLNIESHF 436 (439)
Q Consensus 396 ----g~dILVaTPgrLldlL~--~-~~l~L~----~Lr~LVlDEAD~fe~~~ 436 (439)
...|+|+|+..++.... + +...+. .=+.|||||+|.|+..+
T Consensus 558 ~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~ 609 (1110)
T TIGR02562 558 KTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED 609 (1110)
T ss_pred hhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH
Confidence 14699999999988763 2 222111 13679999999998654
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.90 E-value=0.11 Score=43.92 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCCcce
Q 013623 305 GKSCILADQSGSGKTL 320 (439)
Q Consensus 305 GrDvli~ApTGSGKTl 320 (439)
++.+++.+++|+|||.
T Consensus 19 ~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 19 PKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCeEEEECCCCCCHHH
Confidence 6789999999999994
No 175
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.87 E-value=0.092 Score=58.65 Aligned_cols=66 Identities=29% Similarity=0.420 Sum_probs=50.0
Q ss_pred CCCHHHHHHhhhHhcC-----CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG-----rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.|+-.|..+|..+.++ +..++.+.||||||+... -+++.+ +..+|||+|+..+|.|+++.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~~~~--------------~~p~Lvi~~n~~~A~ql~~e 73 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVIAQV--------------NRPTLVIAHNKTLAAQLYNE 73 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 5888999999887643 367799999999986432 122221 12479999999999999999
Q ss_pred HHhhhc
Q 013623 365 CRSLSK 370 (439)
Q Consensus 365 l~~L~k 370 (439)
++.+..
T Consensus 74 l~~f~p 79 (655)
T TIGR00631 74 FKEFFP 79 (655)
T ss_pred HHHhCC
Confidence 999864
No 176
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.71 E-value=0.095 Score=59.91 Aligned_cols=125 Identities=11% Similarity=0.152 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHhhhHhcCCc-EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 288 FLRPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrD-vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
+..++.-|.+|+-.++..+| .+|.+=+|||||..- ..+-+++.. .+.++|+.+-|..-+.-|.-.++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI--~~LIkiL~~----------~gkkVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI--SLLIKILVA----------LGKKVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH--HHHHHHHHH----------cCCeEEEEehhhHHHHHHHHHHh
Confidence 34677899999999998776 788999999999753 223333221 35688988888887655554444
Q ss_pred hhhcCCCCceEEEEECCCChHH-----------------HHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCC
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKT-----------------QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTAS 429 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~-----------------q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEA 429 (439)
.+ ++.++.+-.+...-. .++..-+.+.|+.+|=--+-+.| +.....+|.|||||
T Consensus 735 ~~-----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEA 805 (1100)
T KOG1805|consen 735 GF-----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEA 805 (1100)
T ss_pred cc-----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccc
Confidence 33 333332222222111 12223345678877743333333 23344799999999
Q ss_pred ccch
Q 013623 430 LNIE 433 (439)
Q Consensus 430 D~fe 433 (439)
-++.
T Consensus 806 SQI~ 809 (1100)
T KOG1805|consen 806 SQIL 809 (1100)
T ss_pred cccc
Confidence 6654
No 177
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.51 E-value=0.15 Score=56.55 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=65.9
Q ss_pred HHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCC
Q 013623 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372 (439)
Q Consensus 293 pIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~ 372 (439)
.++.+.+..|-.++-|+|.+.||||||.- +-+.++...+. .+| ..-+--|-|.-|..+...+..-+.-.
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~------~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYA------DNG-MIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcccc------cCC-eeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34555555566677799999999999963 44555554321 112 22233477887777776554433211
Q ss_pred CCceE--EEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 373 VPFRS--MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 373 ~~i~v--~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
.+-.+ .+-.-+.. ....-|=..|-|-|+.-.- ..-+|.+...||+||||.
T Consensus 428 lG~~VGYsIRFEdvT--------~~~T~IkymTDGiLLrEsL-~d~~L~kYSviImDEAHE 479 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVT--------SEDTKIKYMTDGILLRESL-KDRDLDKYSVIIMDEAHE 479 (1042)
T ss_pred cccccceEEEeeecC--------CCceeEEEeccchHHHHHh-hhhhhhheeEEEechhhh
Confidence 11111 11111110 0123466888888754222 123467789999999983
No 178
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.44 E-value=0.032 Score=61.83 Aligned_cols=123 Identities=20% Similarity=0.293 Sum_probs=83.5
Q ss_pred HHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 294 IQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 294 IQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
+|...+.-+. +|-|=++.-.-|-|||.-. +.++.++.+.. +.-||. ||++|..-| ..+.+.++
T Consensus 571 YQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~-------nIwGPF-LVVtpaStL----~NWaqEis 637 (1185)
T KOG0388|consen 571 YQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETH-------NIWGPF-LVVTPASTL----HNWAQEIS 637 (1185)
T ss_pred HhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhc-------cCCCce-EEeehHHHH----hHHHHHHH
Confidence 4555544332 6778888999999999654 56666665542 123443 778886655 67777777
Q ss_pred cCCCCceEEEEECCCChHHHHHH---------hcCCCcEEEEChHHHHH---HHHhCCCCCCCcccEEEeCCccchh
Q 013623 370 KCGVPFRSMVVTGGFRQKTQLEN---------LQEGVDVLIATPGRFMF---LIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 370 k~~~~i~v~~l~Gg~~~~~q~~~---------L~~g~dILVaTPgrLld---lL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++...++++-..|+......+++ -..+.||+|++-..++. ++++ -+.+|.|||||..+-.
T Consensus 638 rFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 638 RFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKS 709 (1185)
T ss_pred HhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhh
Confidence 77788999988988876666554 23468999999775532 2222 2368999999987653
No 179
>PRK04296 thymidine kinase; Provisional
Probab=94.32 E-value=0.037 Score=51.97 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=19.7
Q ss_pred EChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 402 ATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 402 aTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
..+..++..+.. .-...++|||||++.|..
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~~ 92 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLDK 92 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCCH
Confidence 444555555544 234578999999988843
No 180
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.25 E-value=0.25 Score=53.09 Aligned_cols=137 Identities=17% Similarity=0.107 Sum_probs=77.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
+..|.....++.-.+.|++-. .-|---|..-+-. +..++-+++.+.||||||.-----++...... .
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~-~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-----------~ 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR-ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-----------L 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh-cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-----------c
Confidence 356888888888888875532 2233345555544 44677889999999999964222233332221 1
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC--------CCC
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--------ILQ 417 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~--------~l~ 417 (439)
..+..--|-|--|.++......-+ ++...--+|-. +. . ..| +||..|+.++..+ .-.
T Consensus 92 ~~v~CTQprrvaamsva~RVadEM----Dv~lG~EVGys-Ir-----f-EdC----~~~~T~Lky~tDgmLlrEams~p~ 156 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEM----DVTLGEEVGYS-IR-----F-EDC----TSPNTLLKYCTDGMLLREAMSDPL 156 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHh----ccccchhcccc-cc-----c-ccc----CChhHHHHHhcchHHHHHHhhCcc
Confidence 234445577888887765544322 22222222211 10 0 111 4566666544332 234
Q ss_pred CCCcccEEEeCCc
Q 013623 418 LINLRWYARTASL 430 (439)
Q Consensus 418 L~~Lr~LVlDEAD 430 (439)
|...++||+||||
T Consensus 157 l~~y~viiLDeah 169 (699)
T KOG0925|consen 157 LGRYGVIILDEAH 169 (699)
T ss_pred cccccEEEechhh
Confidence 6788999999998
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.20 E-value=0.039 Score=45.91 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
++.+++.+|+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 56799999999999963
No 182
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=94.17 E-value=0.067 Score=62.34 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=81.1
Q ss_pred CCCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..+..+|...+.-++ .+.++|+.-.-|-|||+- .+.+|..+.... ...||. ||++|..-+ ..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~-------~~~gpf-lvvvplst~----~~W 435 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL-------QIHGPF-LVVVPLSTI----TAW 435 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh-------hccCCe-EEEeehhhh----HHH
Confidence 466778888776655 678999999999999853 222333332221 023443 677775544 344
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhc----C-----CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----E-----GVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~----~-----g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
-+.+-.+. ++++++..|.......++... . .+++|++|-+.++.--. .+.--..+++++||||.+-
T Consensus 436 ~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 436 EREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcC
Confidence 44554443 788988898876665554432 2 38999999877643221 1122236899999999875
No 183
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.16 E-value=0.17 Score=54.18 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.5
Q ss_pred HhhhHhcCCcEEEEcCCCCCccee
Q 013623 298 AFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 298 aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.+..+..++++++.+++|+|||..
T Consensus 187 l~~~L~~~~~iil~GppGtGKT~l 210 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFV 210 (459)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHH
Confidence 344566799999999999999953
No 184
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.14 E-value=0.081 Score=59.96 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=91.3
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|..+|... .+.-...-+....||=||||+..+|+.-..+. +-.+.+++-.--||..-..+...+.
T Consensus 80 ~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~------------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 80 RHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNALA------------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred ChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhcC------------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 344555544 33333445788999999999999997755533 3356788888889998889999988
Q ss_pred cCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 370 k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
.+ .++.+.+...+....++... ..|||..+|-..| .|+|+-+.+ -...+.|.|+||+|.+.
T Consensus 146 ~~-LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EF-LGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HH-cCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 86 78999998888876665544 4689999999876 344443211 12358899999998664
No 185
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.67 E-value=0.58 Score=55.17 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHhhhHhc-CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEc
Q 013623 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (439)
Q Consensus 274 gL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLs-GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILv 352 (439)
++++..+......+ ..+++-|..++..+.. ++=+++++.-|+|||.. +-.+..+... .+.+++.++
T Consensus 366 ~v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~----------~G~~V~g~A 432 (1102)
T PRK13826 366 GVREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA----------AGYRVVGGA 432 (1102)
T ss_pred CCCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH----------cCCeEEEEc
Confidence 34555555544433 4689999999998864 56689999999999943 3333333222 367889999
Q ss_pred CcHHHHHHHH
Q 013623 353 PTAELASQVL 362 (439)
Q Consensus 353 PTrELA~Qi~ 362 (439)
||---|..+.
T Consensus 433 pTgkAA~~L~ 442 (1102)
T PRK13826 433 LAGKAAEGLE 442 (1102)
T ss_pred CcHHHHHHHH
Confidence 9988776654
No 186
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.59 E-value=0.35 Score=54.37 Aligned_cols=72 Identities=19% Similarity=0.116 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
-..+++-|.+++-. ...+++|.|..|||||.+.+--+...+.... ...-++|+|+.|+..|..+.+.+..
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~--------~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ--------AQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC--------CCHHHeEEEeccHHHHHHHHHHHHH
Confidence 35789999998743 3356899999999999875444443332211 1234789999999999999988876
Q ss_pred hh
Q 013623 368 LS 369 (439)
Q Consensus 368 L~ 369 (439)
..
T Consensus 264 ~l 265 (684)
T PRK11054 264 RL 265 (684)
T ss_pred hc
Confidence 54
No 187
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.48 E-value=0.14 Score=50.50 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=33.6
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
++.++++.+++|+|||... .++.+.+... + .-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~-----------g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLKA-----------G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHc-----------C-CeEEEEEHHHHHHHHHHHHh
Confidence 6789999999999998533 2233344321 2 23667778888887776654
No 188
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.47 E-value=0.18 Score=52.49 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHhhhHhcCC--cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGr--Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
.|+..-+.-|..|+.+++... =|.+.++-|||||+..+.+.+......+. .-+.||--|+-.+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---------y~KiiVtRp~vpvG~ 290 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---------YRKIIVTRPTVPVGE 290 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---------hceEEEecCCcCccc
Confidence 577777888999999998542 36778899999999888888877765532 224555556555543
No 189
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=93.42 E-value=0.31 Score=54.47 Aligned_cols=66 Identities=35% Similarity=0.461 Sum_probs=50.5
Q ss_pred CCCHHHHHHhhhHhcC-----CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG-----rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.|+..|..+|..+.++ +..++.+.+|||||+... .++... +..+|||+|+.++|.|+++.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~--------------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL--------------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 6999999999988633 257799999999986532 122211 22589999999999999999
Q ss_pred HHhhhc
Q 013623 365 CRSLSK 370 (439)
Q Consensus 365 l~~L~k 370 (439)
+..+..
T Consensus 77 L~~~~~ 82 (652)
T PRK05298 77 FKEFFP 82 (652)
T ss_pred HHHhcC
Confidence 988864
No 190
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.41 E-value=0.094 Score=53.33 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=60.6
Q ss_pred cccccccCCCHHHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
+.+|++||+|+-+.+.+.. .| =|+|.+|||||||.. +..++.++.+..... -....-
T Consensus 105 i~~~e~LglP~i~~~~~~~~~G-------------------LILVTGpTGSGKSTT-lAamId~iN~~~~~H--IlTIED 162 (353)
T COG2805 105 IPTLEELGLPPIVRELAESPRG-------------------LILVTGPTGSGKSTT-LAAMIDYINKHKAKH--ILTIED 162 (353)
T ss_pred CCCHHHcCCCHHHHHHHhCCCc-------------------eEEEeCCCCCcHHHH-HHHHHHHHhccCCcc--eEEecC
Confidence 3589999999988884422 23 279999999999864 456777775432110 000112
Q ss_pred CeEEEEcCcHHHHHH------HHHHHHhhhcCCCCceEEEEECCCChHHHHHH-h--cCCCcEEEECh
Q 013623 346 PRVVILAPTAELASQ------VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN-L--QEGVDVLIATP 404 (439)
Q Consensus 346 p~aLILvPTrELA~Q------i~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~-L--~~g~dILVaTP 404 (439)
|.-.|-..-+.|++| .......|-...-.=.-+++.|...-.+.+.. + ...-|++.+|-
T Consensus 163 PIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TL 230 (353)
T COG2805 163 PIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTL 230 (353)
T ss_pred chHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCCEEEEec
Confidence 222233344455554 33333333211001123456676655444332 2 23458888874
No 191
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=93.23 E-value=0.42 Score=51.54 Aligned_cols=140 Identities=17% Similarity=0.141 Sum_probs=78.8
Q ss_pred cccccccccC--CCHHHHHHHHHCCCCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCC
Q 013623 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (439)
Q Consensus 265 ~s~~sF~elg--L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 341 (439)
.+...+++|. +++.|+.+| .|.|...+...| .|--+++.-.-|-|||+-.+.-+-.+..+.
T Consensus 179 ~~ea~~~~l~ev~d~kLvs~L--------lPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw-------- 242 (689)
T KOG1000|consen 179 KPEAAPSDLNEVMDPKLVSRL--------LPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW-------- 242 (689)
T ss_pred CCccCHHHHhhccCHHHHHhh--------CchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC--------
Confidence 3344455553 346666555 678999888776 677788899999999975533222222111
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcCC-CCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCG-VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~-~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
-.||+||..-+ +.+.+.+..+. .-..+.++.++...... +.....|.|..-+.+..+- ..+.-..
T Consensus 243 -----plliVcPAsvr----ftWa~al~r~lps~~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~--~~l~~~~ 308 (689)
T KOG1000|consen 243 -----PLLIVCPASVR----FTWAKALNRFLPSIHPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLH--DILKKEK 308 (689)
T ss_pred -----cEEEEecHHHh----HHHHHHHHHhcccccceEEEecccCCccc---cccCCeEEEEEHHHHHHHH--HHHhccc
Confidence 24888995433 33333333321 11235555555433221 1223457777766543322 2233344
Q ss_pred cccEEEeCCccchh
Q 013623 421 LRWYARTASLNIES 434 (439)
Q Consensus 421 Lr~LVlDEAD~fe~ 434 (439)
.+.||+||+|++-.
T Consensus 309 ~~vvI~DEsH~Lk~ 322 (689)
T KOG1000|consen 309 YRVVIFDESHMLKD 322 (689)
T ss_pred ceEEEEechhhhhc
Confidence 78999999998753
No 192
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.09 E-value=0.19 Score=51.33 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=33.1
Q ss_pred HHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 280 IESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 280 l~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
+..|.+.|+ +++.|...+.. +..+++++++++|||||| .++-.++..+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~ 172 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEM 172 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhh
Confidence 344445554 45667776655 457789999999999999 5555666554
No 193
>PRK06526 transposase; Provisional
Probab=92.98 E-value=0.18 Score=49.81 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+-.++++++.+|+|+|||..
T Consensus 95 i~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred hhcCceEEEEeCCCCchHHH
Confidence 33678999999999999954
No 194
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=92.98 E-value=0.046 Score=59.19 Aligned_cols=98 Identities=18% Similarity=0.149 Sum_probs=64.3
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCC
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~ 385 (439)
+=++-++||.||||. -+|+++.... .+++--|.|-||.+|++.+.++ ++.+-+++|...
T Consensus 192 kIi~H~GPTNSGKTy----~ALqrl~~ak------------sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~ 250 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTY----RALQRLKSAK------------SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEER 250 (700)
T ss_pred eEEEEeCCCCCchhH----HHHHHHhhhc------------cceecchHHHHHHHHHHHhhhc-----CCCcccccccee
Confidence 336677899999994 4677775542 4699999999999999998865 577778887643
Q ss_pred hHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCC-CCcccEEEeCCccchhh
Q 013623 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQL-INLRWYARTASLNIESH 435 (439)
Q Consensus 386 ~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L-~~Lr~LVlDEAD~fe~~ 435 (439)
....-. .+.++.+=+|=+. . ++ ......||||++++.+.
T Consensus 251 ~~~~~~--~~~a~hvScTVEM----~-----sv~~~yeVAViDEIQmm~Dp 290 (700)
T KOG0953|consen 251 RFVLDN--GNPAQHVSCTVEM----V-----SVNTPYEVAVIDEIQMMRDP 290 (700)
T ss_pred eecCCC--CCcccceEEEEEE----e-----ecCCceEEEEehhHHhhcCc
Confidence 322110 1124445455221 1 11 22688999999887653
No 195
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.82 E-value=0.33 Score=50.73 Aligned_cols=126 Identities=19% Similarity=0.181 Sum_probs=60.3
Q ss_pred ccccccCCCHHHHHHHHH-C--C--CCCCCHHHHH---H----hhhH-------hcCCcEEEEcCCCCCcceeehhHHHH
Q 013623 268 KSFKELGCSDYMIESLKR-Q--N--FLRPSQIQAM---A----FPPV-------VEGKSCILADQSGSGKTLAYLLPVIQ 328 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~-~--g--f~~pTpIQ~~---a----IP~i-------LsGrDvli~ApTGSGKTlaylLPiL~ 328 (439)
..+.++|+++.+.+.|.+ + + ...+...+.. . ++.+ -.|..+++.+|||+|||....--+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357777888888777743 2 1 1122121111 1 1111 13568999999999999754332222
Q ss_pred HHHHHHhhccCCCCCCCCeEEEE-cCc-HHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHH
Q 013623 329 RLRQEELQGLSKSTSGSPRVVIL-APT-AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406 (439)
Q Consensus 329 ~l~~~~~~~~~~~~~~gp~aLIL-vPT-rELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgr 406 (439)
.+... ...++.++ +-+ |.-+.+. ++.+++. .++.+..+.........+..+.+.--|||=|+|+
T Consensus 161 ~~~~~----------G~~~V~lit~D~~R~ga~Eq---L~~~a~~-~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~ 226 (374)
T PRK14722 161 CVMRF----------GASKVALLTTDSYRIGGHEQ---LRIFGKI-LGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGM 226 (374)
T ss_pred HHHhc----------CCCeEEEEecccccccHHHH---HHHHHHH-cCCceEecCCcccHHHHHHHhcCCCEEEEcCCCC
Confidence 22111 11123333 222 2112222 2222221 2344444444444444455555544577888876
Q ss_pred H
Q 013623 407 F 407 (439)
Q Consensus 407 L 407 (439)
.
T Consensus 227 ~ 227 (374)
T PRK14722 227 S 227 (374)
T ss_pred C
Confidence 5
No 196
>PRK10536 hypothetical protein; Provisional
Probab=92.37 E-value=0.17 Score=50.38 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~ 332 (439)
.++..-+..|...+-.+.+...+++.+++|||||+..+...++.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35666788999999989888889999999999998877777766543
No 197
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.34 E-value=0.2 Score=56.12 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=51.4
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.+++-|.+++... ...++|.|..|||||.+.+.=+...+.... ...-+.|+|+-|+..|.++.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4788999988653 467899999999999875544544443211 123368999999999999988887664
No 198
>PRK08181 transposase; Validated
Probab=92.02 E-value=0.57 Score=46.78 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.++++++.+|+|+|||-
T Consensus 105 ~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 105 KGANLLLFGPPGGGKSH 121 (269)
T ss_pred cCceEEEEecCCCcHHH
Confidence 67899999999999994
No 199
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=91.97 E-value=0.85 Score=46.40 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=84.6
Q ss_pred ccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHh----------cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCC
Q 013623 272 ELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (439)
Q Consensus 272 elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL----------sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 341 (439)
.+.|++.++.. ..++..|.+++-.+. ...-.++--.||.||--.-.--|++++...
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------- 90 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------- 90 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--------
Confidence 34566655432 245677877775554 234678888999999766555556655432
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC---C---
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG---I--- 415 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~---~--- 415 (439)
..++|.|.-+..|-....+-++.+... .+.+..+.- .+... ...+ .-.||.+|-..|..--..+ .
T Consensus 91 ---r~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~-~~~~~-~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl 161 (303)
T PF13872_consen 91 ---RKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNK-FKYGD-IIRL--KEGVLFSTYSTLISESQSGGKYRSRL 161 (303)
T ss_pred ---CCceEEEECChhhhhHHHHHHHHhCCC--cccceechh-hccCc-CCCC--CCCccchhHHHHHhHHhccCCccchH
Confidence 346899999999999988889888753 333333321 11110 0112 3458999988877664321 1
Q ss_pred --------CCCCCcccEEEeCCccch
Q 013623 416 --------LQLINLRWYARTASLNIE 433 (439)
Q Consensus 416 --------l~L~~Lr~LVlDEAD~fe 433 (439)
-+++ .+||+||||.--
T Consensus 162 ~ql~~W~g~dfd--gvivfDEcH~ak 185 (303)
T PF13872_consen 162 DQLVDWCGEDFD--GVIVFDECHKAK 185 (303)
T ss_pred HHHHHHHhcCCC--ceEEeccchhcC
Confidence 1222 489999999654
No 200
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.96 E-value=0.38 Score=53.48 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=50.8
Q ss_pred CCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 291 pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
+++-|.+++.. ...+++|.|..|||||.+-+-=+...+.... ....+.|+|+.|+..|.++.+.+.++.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~--------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG--------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998754 3568999999999999875554554443211 123468999999999999988887664
No 201
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.82 E-value=0.72 Score=54.81 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.+++|++++++-+..+++.+.++. .++++.++.|+.+..+....+ . ...+||||| +++ ...+++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIi-erGIDIP~ 879 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TII-ETGIDIPT 879 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chh-hccccccc
Confidence 5689999999999888888888764 357888899998776543333 2 459999999 344 45689999
Q ss_pred cccEEEeCCccch
Q 013623 421 LRWYARTASLNIE 433 (439)
Q Consensus 421 Lr~LVlDEAD~fe 433 (439)
+++||++.+|+|.
T Consensus 880 v~~VIi~~ad~fg 892 (1147)
T PRK10689 880 ANTIIIERADHFG 892 (1147)
T ss_pred CCEEEEecCCCCC
Confidence 9999999999774
No 202
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=91.76 E-value=0.19 Score=57.69 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=77.4
Q ss_pred CCCHHHHHHhhhHh---c-CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVV---E-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL---s-GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.+-++|...+.-+. + +-|=++.-.+|-|||.. .+.++.++.+.. ...||+ |||||+--|.+= -
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K-------~~~GP~-LvivPlstL~NW----~ 460 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK-------QMQGPF-LIIVPLSTLVNW----S 460 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc-------ccCCCe-EEeccccccCCc----h
Confidence 55566776654433 2 23567778999999965 455666665543 234554 788998888553 3
Q ss_pred HhhhcCCCCceEEEEECCCChHHH--HHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQ--LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q--~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
..+.++...+......|.-....- .......++||++|-+.+.. .+..+.--...|+||||.|.+-.+.
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~ 531 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI 531 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh
Confidence 334444445555555543322111 11112459999999877654 1111222236799999999887654
No 203
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.39 E-value=0.45 Score=48.83 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=30.5
Q ss_pred HHHCCCCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 283 LKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 283 L~~~gf~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
+.+.|+ .++.|...|-.++ .+.+++++++||||||. ++-.++..+
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i 168 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEI 168 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHH
Confidence 444444 4566776665544 67899999999999995 334555554
No 204
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.09 E-value=0.069 Score=46.72 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=12.6
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
+|++.+++|+|||.
T Consensus 1 ~vlL~G~~G~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPGTGKTT 14 (139)
T ss_dssp EEEEEESSSSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 58999999999984
No 205
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=91.03 E-value=0.28 Score=55.17 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=52.5
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++-|.+++... ..+++|.|..|||||.+...=+...+.... ...-+.|+|+-|+..|..+.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~--------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN--------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 45889999988653 468999999999999875443433332211 12346899999999999999888877
Q ss_pred hc
Q 013623 369 SK 370 (439)
Q Consensus 369 ~k 370 (439)
..
T Consensus 73 ~~ 74 (715)
T TIGR01075 73 LG 74 (715)
T ss_pred hc
Confidence 54
No 206
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.03 E-value=0.46 Score=56.84 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=75.0
Q ss_pred CCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhc
Q 013623 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (439)
Q Consensus 291 pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k 370 (439)
.|+-|.++|- ..+++++|.|.-|||||.+.+-=++..+... ..--+.|+|+=|+..|..+...+.+-..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5889999997 3689999999999999987665566655321 1113589999999999888777765432
Q ss_pred CCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHH-HHHhCCCCCC-CcccEEEeCCc
Q 013623 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF-LIKEGILQLI-NLRWYARTASL 430 (439)
Q Consensus 371 ~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLld-lL~~~~l~L~-~Lr~LVlDEAD 430 (439)
. -+.- --.......|+..+ ...-|+|-..|+. ++++....+. .-.|=|+||.+
T Consensus 71 ~--~~~~--~p~~~~L~~q~~~~---~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e 125 (1232)
T TIGR02785 71 K--ALQQ--EPNSKHLRRQLALL---NTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTE 125 (1232)
T ss_pred H--HHhc--CchhHHHHHHHhhc---cCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHH
Confidence 1 0000 00112233343333 3467899888765 4444322211 12455688774
No 207
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.88 E-value=0.24 Score=51.31 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=37.6
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
+++++|+||||||.++++|.+-.. ...+||+=|--|+........+.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 589999999999999999976432 235788888899988777666554
No 208
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.87 E-value=1.1 Score=42.06 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+..+++.+++|+|||..
T Consensus 37 ~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 457899999999999853
No 209
>PHA02533 17 large terminase protein; Provisional
Probab=90.81 E-value=0.7 Score=50.56 Aligned_cols=124 Identities=14% Similarity=0.055 Sum_probs=75.3
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|.|.|...+-.+..++-.++..+-..|||.+...-++...... .+..+++++|+++-|..+++.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~----------~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN----------KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 47789999887776666667888889999987665555444322 35599999999999999998887665
Q ss_pred cCCCCc-eEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 370 KCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 370 k~~~~i-~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.....+ +..+.. . ......+.+|..|.+.|-.. +...=.+..++|+||++....
T Consensus 129 e~~P~l~~~~i~~-~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 129 ELLPDFLQPGIVE-W---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred HhCHHHhhcceee-c---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC
Confidence 421111 111100 0 01111224566665444221 111112367899999986543
No 210
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.71 E-value=0.37 Score=49.75 Aligned_cols=86 Identities=23% Similarity=0.238 Sum_probs=55.4
Q ss_pred CCCCccccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC-cEEEEcCCCCCcceeehhHHHHHHHHHHhhcc
Q 013623 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338 (439)
Q Consensus 260 ~~~~~~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr-Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~ 338 (439)
.+++.+++..|..-.|.-. .|- .|...++-|...+-.+..++ |+++++.||||||. +|+.+...-
T Consensus 132 ~dGp~lsIRKf~k~~ltl~---dli--~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i---- 197 (355)
T COG4962 132 IDGPTLSIRKFPKIKLTLL---DLI--IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFI---- 197 (355)
T ss_pred cCCCcccccccccccccHH---HHH--HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcC----
Confidence 3466677777776654432 332 46788899999888888665 99999999999985 233332210
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 339 SKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 339 ~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
...-++|.|=-|.||-.+.-+
T Consensus 198 ----~~~eRvItiEDtaELql~~ph 218 (355)
T COG4962 198 ----DSDERVITIEDTAELQLAHPH 218 (355)
T ss_pred ----CCcccEEEEeehhhhccCCCc
Confidence 111267777777777554433
No 211
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=90.61 E-value=1.2 Score=55.60 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=47.1
Q ss_pred CCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.+++-|.+++-.++.. +=+++.++.|+|||. ++-.+..+.+. .+.++++++||..-+.+..+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt--~l~~l~~~~~~----------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTE--IAQLLLHLASE----------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHH--HHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHH
Confidence 5788999999999865 558999999999994 33333333332 367899999999877766654
No 212
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.47 E-value=0.92 Score=45.36 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=27.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC--cEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr--Dvli~ApTGSGKTla 321 (439)
++|+++--.+.+++.|.. .+..++ ++++.+|+|+|||..
T Consensus 12 ~~~~~~~g~~~~~~~L~~---------------~~~~~~~~~lll~Gp~GtGKT~l 52 (337)
T PRK12402 12 ALLEDILGQDEVVERLSR---------------AVDSPNLPHLLVQGPPGSGKTAA 52 (337)
T ss_pred CcHHHhcCCHHHHHHHHH---------------HHhCCCCceEEEECCCCCCHHHH
Confidence 567777666776666644 122344 799999999999954
No 213
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=90.27 E-value=0.36 Score=54.47 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++-|.+++-.. ..+++|.|..|||||.+-+.=+...+.... ...-++|+|+-|+..|.++.+.+.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN--------ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35889999988643 468999999999999875444443332211 12346899999999999999888877
Q ss_pred hc
Q 013623 369 SK 370 (439)
Q Consensus 369 ~k 370 (439)
..
T Consensus 78 ~~ 79 (721)
T PRK11773 78 LG 79 (721)
T ss_pred hc
Confidence 53
No 214
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.17 E-value=1.1 Score=50.03 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=66.7
Q ss_pred HHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH-hhhcC--
Q 013623 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-SLSKC-- 371 (439)
Q Consensus 295 Q~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~-~L~k~-- 371 (439)
-.+.+.++-..+=++|.+.||||||.- +| |.+.+..+. ..+-+.=+--|-|--|+.|...+. .+...
T Consensus 270 kdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGyt------k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 270 KDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYT------KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred HHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhcccc------cCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 344555566667789999999999963 33 444333211 223334455688888888776543 33221
Q ss_pred -CCC--ceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCc
Q 013623 372 -GVP--FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASL 430 (439)
Q Consensus 372 -~~~--i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD 430 (439)
..+ |+.--++. ...-|=+.|-|.|+.-+. .-.+|..-.++||||||
T Consensus 340 ~eVGYsIRFEdcTS------------ekTvlKYMTDGmLlREfL-~epdLasYSViiiDEAH 388 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTS------------EKTVLKYMTDGMLLREFL-SEPDLASYSVIIVDEAH 388 (902)
T ss_pred cccceEEEeccccC------------cceeeeeecchhHHHHHh-ccccccceeEEEeehhh
Confidence 011 12111111 112356889998876443 34578889999999998
No 215
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=89.95 E-value=0.78 Score=46.40 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=30.1
Q ss_pred HHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 280 IESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 280 l~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
+..|.+.|. +++-|...+-. +..+++++++++||||||.. +-.++..+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i 156 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEI 156 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 334444443 44555555544 44678999999999999953 34455554
No 216
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=89.94 E-value=0.33 Score=47.35 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 277 ~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
++++++|..-|.....+.--+.+--+..|.-+++.|++|+|||..
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l 46 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTF 46 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHH
Confidence 345566653333332222222333455778899999999999953
No 217
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=89.81 E-value=1.9 Score=46.99 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHhh---hHh-cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 288 FLRPSQIQAMAFP---PVV-EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 288 f~~pTpIQ~~aIP---~iL-sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
|..-.|-|.+=+- ..| .+-+.++..|+|+|||.+.|--++..-
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq 60 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQ 60 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHH
Confidence 4444555654332 233 456889999999999988665555544
No 218
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=89.81 E-value=1.5 Score=51.12 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=63.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.+++|++|+.+-+..+++.++++. .++++.++.|+....+....+ . ...+|||+|- ++ ...+++.
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----ii-e~GIDIp 729 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----II-ETGIDIP 729 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcccccc
Confidence 35689999999999998888888764 358899999998776554333 2 4589999993 34 4568899
Q ss_pred CcccEEEeCCccch
Q 013623 420 NLRWYARTASLNIE 433 (439)
Q Consensus 420 ~Lr~LVlDEAD~fe 433 (439)
+++++|++.++.|.
T Consensus 730 ~v~~VIi~~a~~~g 743 (926)
T TIGR00580 730 NANTIIIERADKFG 743 (926)
T ss_pred cCCEEEEecCCCCC
Confidence 99999999998764
No 219
>PRK08727 hypothetical protein; Validated
Probab=89.79 E-value=0.53 Score=45.55 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=27.9
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++.+++|+|||-.. -.+.+.+.. .+.+++++ +..++...+.+.++.+
T Consensus 42 ~~l~l~G~~G~GKThL~-~a~~~~~~~-----------~~~~~~y~-~~~~~~~~~~~~~~~l 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA-LALCAAAEQ-----------AGRSSAYL-PLQAAAGRLRDALEAL 91 (233)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHH-----------cCCcEEEE-eHHHhhhhHHHHHHHH
Confidence 45999999999999422 223333322 23455554 4455555444444444
No 220
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.73 E-value=1.2 Score=49.11 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=45.3
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhc
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k 370 (439)
.++=++|++..|||||.+.|-=+...++..+- . ..+-.+|||.|++-+..-|.+++-.|+.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~-----~-l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRG-----P-LQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhcccc-----c-cccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 34568999999999998876555554544321 1 1222399999999999999999999976
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.73 E-value=1.1 Score=45.47 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=35.3
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
.++++.++|+.|||. ++.++...--.........-|.++|-+|...-....+..+-
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 589999999999996 45555432111111111234788888888777666665543
No 222
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=89.72 E-value=0.63 Score=52.42 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=80.7
Q ss_pred CCCCHHHHHHhhhHh-----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL-----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
..+.++|...+.-+. .+.+-++...-|-|||+--+.-+.+ +... .....+.++|+||+..+. +..+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~-------~~~~~~~~liv~p~s~~~-nw~~ 407 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLES-------IKVYLGPALIVVPASLLS-NWKR 407 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhc-------ccCCCCCeEEEecHHHHH-HHHH
Confidence 345556777665433 3567788899999999765444444 2111 011246789999976553 3455
Q ss_pred HHHhhhcCCCCce-EEEEECCCCh----HHHHHHhcC-C----CcEEEEChHHHHHHH-HhCCCCCCCcccEEEeCCccc
Q 013623 364 NCRSLSKCGVPFR-SMVVTGGFRQ----KTQLENLQE-G----VDVLIATPGRFMFLI-KEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 364 ~l~~L~k~~~~i~-v~~l~Gg~~~----~~q~~~L~~-g----~dILVaTPgrLldlL-~~~~l~L~~Lr~LVlDEAD~f 432 (439)
.+.++. ..++ +....|.... ......+.. + .+++++|-+.+...+ ....+.-....++|+||+|.+
T Consensus 408 e~~k~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~i 484 (866)
T COG0553 408 EFEKFA---PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRI 484 (866)
T ss_pred HHhhhC---ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHH
Confidence 555554 3455 6677776641 333333322 2 789999988877632 112233344789999999986
Q ss_pred hh
Q 013623 433 ES 434 (439)
Q Consensus 433 e~ 434 (439)
..
T Consensus 485 kn 486 (866)
T COG0553 485 KN 486 (866)
T ss_pred hh
Confidence 54
No 223
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.68 E-value=1.5 Score=47.52 Aligned_cols=113 Identities=17% Similarity=0.058 Sum_probs=54.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc-HHHHHHHHHHHHhhhcCCCCceEEEEEC
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT-AELASQVLSNCRSLSKCGVPFRSMVVTG 382 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT-rELA~Qi~~~l~~L~k~~~~i~v~~l~G 382 (439)
.|+-+++.+|||+|||.+...-+-...... .....+||-+-+ |.=+. ++++.++.. .++.+.....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---------G~~kV~LI~~Dt~RigA~---EQLr~~Aei-lGVpv~~~~~ 321 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH---------GASKVALLTTDSYRIGGH---EQLRIYGKI-LGVPVHAVKD 321 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc---------CCCeEEEEeCCccchhHH---HHHHHHHHH-hCCCeeccCC
Confidence 355688999999999976433222221111 011223444333 22222 233333321 2344433333
Q ss_pred CCChHHHHHHhcCCCcEEEEChHHHHHH---HHh----CCCCCCCcccEEEeCC
Q 013623 383 GFRQKTQLENLQEGVDVLIATPGRFMFL---IKE----GILQLINLRWYARTAS 429 (439)
Q Consensus 383 g~~~~~q~~~L~~g~dILVaTPgrLldl---L~~----~~l~L~~Lr~LVlDEA 429 (439)
.......+..+...-.|+|-|+|+.... ... .......=.+||||..
T Consensus 322 ~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt 375 (484)
T PRK06995 322 AADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT 375 (484)
T ss_pred chhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC
Confidence 3334344445555567999999954321 111 1111111278999987
No 224
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=89.56 E-value=0.98 Score=48.27 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=57.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCc----eEEEEEC---------------CCChHHHHHHh-----------
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPF----RSMVVTG---------------GFRQKTQLENL----------- 393 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i----~v~~l~G---------------g~~~~~q~~~L----------- 393 (439)
..|++|||+|+|.-|.++.+.+.+++.....+ +..--+| ...+. ....+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~-D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPE-DFKALFSGNNDDCFRL 114 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCch-hHHHhcCCCccceEEE
Confidence 46999999999999999999888876421000 0000011 00111 11100
Q ss_pred --------------cCCCcEEEEChHHHHHHHHh---C---CCCCCCcccEEEeCCccch
Q 013623 394 --------------QEGVDVLIATPGRFMFLIKE---G---ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 394 --------------~~g~dILVaTPgrLldlL~~---~---~l~L~~Lr~LVlDEAD~fe 433 (439)
-..+|||||+|=-|-.++.. + .-.|+.+.++|||.||.|.
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~ 174 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL 174 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH
Confidence 13579999999998888874 1 2247889999999998765
No 225
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.51 E-value=0.38 Score=53.51 Aligned_cols=44 Identities=30% Similarity=0.458 Sum_probs=37.0
Q ss_pred CCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQE 333 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~ 333 (439)
+|+.||.+.+..+. .|+=-|+.+||||||||+.+..++..+...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 58889988776654 688778999999999999999999988654
No 226
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.43 E-value=1.4 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHH
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l 330 (439)
..+++.+++|+|||... ..+...+
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHH
Confidence 47999999999999533 3344444
No 227
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.37 E-value=0.33 Score=51.49 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=38.5
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.++++.|+||||||..|++|.|-.. .+ -+||.=|-.||.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-------------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-------------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-------------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 5799999999999999999976321 11 4688889899988777766654
No 228
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=89.32 E-value=3.5 Score=39.86 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCCHHHHHHhhhHh----cCC-cEEEEcCCCCCccee
Q 013623 290 RPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLA 321 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL----sGr-Dvli~ApTGSGKTla 321 (439)
.+++.+.+++..+. .+. .+++.+++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 45555555555543 233 588999999999953
No 229
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.57 E-value=2.8 Score=46.01 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCcceee
Q 013623 304 EGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlay 322 (439)
.|+.++++++||+|||...
T Consensus 349 ~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999654
No 230
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=88.49 E-value=0.81 Score=49.05 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHhhhHh-----cC----CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 293 QIQAMAFPPVV-----EG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 293 pIQ~~aIP~iL-----sG----rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
|.|.-.+-.++ .| +.+++.-+-+.|||..-..-++..+.-. ...++.+++.+++++-|..+++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--------g~~~~~i~~~A~~~~QA~~~f~ 72 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--------GEPGAEIYCAANTRDQAKIVFD 72 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--------CccCceEEEEeCCHHHHHHHHH
Confidence 45666655555 12 3578888999999975544444444322 1356889999999999999999
Q ss_pred HHHhhhcC
Q 013623 364 NCRSLSKC 371 (439)
Q Consensus 364 ~l~~L~k~ 371 (439)
.+..+...
T Consensus 73 ~~~~~i~~ 80 (477)
T PF03354_consen 73 EAKKMIEA 80 (477)
T ss_pred HHHHHHHh
Confidence 99988763
No 231
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.33 E-value=3.5 Score=45.38 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.|+|++.|.++++.+... ++.+..++|+.+..++...+ + ...+|||+| +++. ..+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCcc
Confidence 3568999999999999999888653 57899999998876654433 3 358999999 4444 567888
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.|+++|.-+.
T Consensus 325 ~V~~VInyd~ 334 (572)
T PRK04537 325 GVKYVYNYDL 334 (572)
T ss_pred CCCEEEEcCC
Confidence 8998887544
No 232
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.32 E-value=0.36 Score=44.32 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=32.2
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHhCCC---CCCCcccEEEeCCccchhhhc
Q 013623 390 LENLQEGVDVLIATPGRFMFLIKEGIL---QLINLRWYARTASLNIESHFS 437 (439)
Q Consensus 390 ~~~L~~g~dILVaTPgrLldlL~~~~l---~L~~Lr~LVlDEAD~fe~~~~ 437 (439)
.+.....+||||++-.-|++-.....+ .+. -.+|||||||++++..+
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~~~~ 162 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLEDAAR 162 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGGGCH
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHHHHH
Confidence 344455699999999988775544333 333 46899999999998654
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.25 E-value=1.5 Score=38.11 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=12.2
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
+++.+++|+|||..
T Consensus 2 ~~i~G~~G~GKT~l 15 (165)
T cd01120 2 ILVFGPTGSGKTTL 15 (165)
T ss_pred eeEeCCCCCCHHHH
Confidence 68899999999963
No 234
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=88.19 E-value=1.1 Score=44.04 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
..++++.+|+|+|||..
T Consensus 42 ~~~vll~GppGtGKTtl 58 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTV 58 (261)
T ss_pred cceEEEEcCCCCCHHHH
Confidence 35799999999999954
No 235
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.06 E-value=0.67 Score=47.65 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=21.8
Q ss_pred hHhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
++..+++++|+++||||||. ++-.++..+
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~i 184 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREI 184 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhC
Confidence 34578899999999999995 445555554
No 236
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=0.58 Score=50.98 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=29.6
Q ss_pred ccccccC---CCHHHHHHHHHCC---CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcce
Q 013623 268 KSFKELG---CSDYMIESLKRQN---FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 268 ~sF~elg---L~~~Ll~aL~~~g---f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTl 320 (439)
-.|++|| |..+.-+.+++.- .-.|--+-+-.|+++ +-+++-+|+|+||||
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HV---KGiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHV---KGILLYGPPGTGKTL 271 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccce---eeEEEECCCCCChhH
Confidence 4688885 6677666665431 111222222222222 579999999999996
No 237
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.01 E-value=2.7 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=19.8
Q ss_pred CCceEeecCCCCCceEEeCcCCCC
Q 013623 79 AGACELIDNDTGEKVIVWGGTDDD 102 (439)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~ 102 (439)
|||+.|..+...+++=|-.-+|++
T Consensus 24 ~DAVILssrkV~~gvEV~AAiD~~ 47 (767)
T PRK14723 24 PDALVLSNRSVAEGVEIVAMLDED 47 (767)
T ss_pred CCeEEEecceeCCceEEEEEeccc
Confidence 688888888888888888889874
No 238
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=87.85 E-value=1.1 Score=52.85 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=73.1
Q ss_pred HHHHHhhh--Hhc--CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCC-CCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 294 IQAMAFPP--VVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 294 IQ~~aIP~--iLs--GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~-~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
+|++.+.= +|. +-+=++|---|-|||+--+.-+.......+ ..... ...-.||+||.. | +.+++.++
T Consensus 979 YQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~----s~~~e~~~~PSLIVCPsT-L---tGHW~~E~ 1050 (1549)
T KOG0392|consen 979 YQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR----SESSEFNRLPSLIVCPST-L---TGHWKSEV 1050 (1549)
T ss_pred HHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc----ccchhhccCCeEEECCch-h---hhHHHHHH
Confidence 56665443 232 236688999999999865554444443331 11111 222379999964 4 34444445
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHH---HHHhCCCCCCCcccEEEeCCccch
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF---LIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLld---lL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
.+|-.-+++...+|.-..+...+.--+..+|||+.-..+-. .|.+ ....|.|+||-|-+-
T Consensus 1051 ~kf~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~-----~~wNYcVLDEGHVik 1113 (1549)
T KOG0392|consen 1051 KKFFPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIK-----IDWNYCVLDEGHVIK 1113 (1549)
T ss_pred HHhcchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHh-----cccceEEecCcceec
Confidence 44423366666666655444443333457999999766532 2221 236899999999654
No 239
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.82 E-value=0.65 Score=47.79 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
..++++.+++|+|||..
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999964
No 240
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=87.77 E-value=0.71 Score=52.07 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=51.7
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++-|.+++... ..+++|.|..|||||.+.+-=+...+.... ...-+.|+|+-|+..|..+.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~--------i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN--------VAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC--------CCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 45889999988653 467999999999999875544444442211 11236899999999998888888766
Q ss_pred hc
Q 013623 369 SK 370 (439)
Q Consensus 369 ~k 370 (439)
..
T Consensus 73 ~~ 74 (726)
T TIGR01073 73 LG 74 (726)
T ss_pred hc
Confidence 43
No 241
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.72 E-value=1.7 Score=43.52 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCCcceee
Q 013623 305 GKSCILADQSGSGKTLAY 322 (439)
Q Consensus 305 GrDvli~ApTGSGKTlay 322 (439)
++.+++++|||+|||...
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999643
No 242
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=87.65 E-value=0.82 Score=50.76 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=40.0
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.++++.||||||||..|++|-|-... .-+||+=|--|+........+++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~--------------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE--------------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC--------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 57999999999999999999875531 24688889999988888777665
No 243
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=87.64 E-value=0.26 Score=54.12 Aligned_cols=128 Identities=9% Similarity=0.076 Sum_probs=72.3
Q ss_pred CCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH-HHHH
Q 013623 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL-SNCR 366 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~-~~l~ 366 (439)
..+|+|...+.++-.- +.|+++.++-+|||.+.+.-+...+.. ...-+|++.||.++|.+.. ..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-----------~P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-----------DPGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-----------CCCCEEEEEEcHHHHHHHHHHHHH
Confidence 4677888777766633 679999999999998443333333322 1235799999999999976 5566
Q ss_pred hhhcCCCCceEEEEE---CCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhh
Q 013623 367 SLSKCGVPFRSMVVT---GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESH 435 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~---Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~ 435 (439)
.+......++-.+.- ...........+. |..|.++.-+. -..+.-..+++|++||+|.|...
T Consensus 85 Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~~ 149 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPDD 149 (557)
T ss_pred HHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhcccc
Confidence 665532223321111 0111111111222 33333332111 01223344899999999999654
No 244
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.60 E-value=0.89 Score=46.22 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHH
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.++++.+|+|+|||.. +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 6899999999999953 23344443
No 245
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.55 E-value=1.9 Score=40.47 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=26.2
Q ss_pred EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH
Q 013623 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi 361 (439)
.++.+++|||||..|.......+ .+++++.+-++|.|+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~----------------~~~~~VN~D~iA~~i 42 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLL----------------PGIVFVNADEIAAQI 42 (187)
T ss_pred EEEecCCCCCceeeeeccchhhc----------------CCeEEECHHHHhhhc
Confidence 46789999999999865544322 136677777776665
No 246
>PLN03025 replication factor C subunit; Provisional
Probab=87.49 E-value=1.7 Score=43.89 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=28.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
++|+++--++.+++.|+.+ ++.. ...++++.+|+|+|||..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~-------~~~~------~~~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVI-------ARDG------NMPNLILSGPPGTGKTTS 50 (319)
T ss_pred CCHHHhcCcHHHHHHHHHH-------HhcC------CCceEEEECCCCCCHHHH
Confidence 5788886677777777542 0111 124689999999999954
No 247
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=87.19 E-value=1.4 Score=45.27 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCCCcce
Q 013623 302 VVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTl 320 (439)
+..++++++.+++|+|||.
T Consensus 61 l~~~~~ilL~G~pGtGKTt 79 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKST 79 (327)
T ss_pred HhcCCcEEEEeCCCChHHH
Confidence 4468899999999999995
No 248
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=87.05 E-value=2 Score=44.87 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
.|+++.++||||||..
T Consensus 43 ~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 43 SNIIIYGPTGTGKTAT 58 (366)
T ss_pred ccEEEECCCCCCHhHH
Confidence 3799999999999964
No 249
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=86.99 E-value=0.61 Score=45.41 Aligned_cols=35 Identities=34% Similarity=0.412 Sum_probs=32.1
Q ss_pred CCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCC
Q 013623 395 EGVDVLIATPGRFMFLIKEGILQLINLRWYARTAS 429 (439)
Q Consensus 395 ~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEA 429 (439)
+..++-||||+|+..+++.+.++++.+.+||+|=.
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWS 229 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEeecc
Confidence 45889999999999999999999999999999965
No 250
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.84 E-value=0.63 Score=48.13 Aligned_cols=29 Identities=31% Similarity=0.378 Sum_probs=21.3
Q ss_pred hHhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
++..+++++++++||||||. ++-.++..+
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i 186 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAI 186 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHccc
Confidence 45578999999999999995 334444444
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.62 E-value=1.7 Score=45.40 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.1
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
..+++.+++|+|||.
T Consensus 137 n~l~l~G~~G~GKTh 151 (405)
T TIGR00362 137 NPLFIYGGVGLGKTH 151 (405)
T ss_pred CeEEEECCCCCcHHH
Confidence 458999999999995
No 252
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.61 E-value=2.6 Score=46.14 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=75.8
Q ss_pred CCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH---H
Q 013623 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---L 390 (439)
Q Consensus 314 TGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q---~ 390 (439)
.+.|++-.-++++.+.+... -.|.+||.+-+.|-|.|++..+..+ .++.+.+++|..+.... .
T Consensus 366 vF~gse~~K~lA~rq~v~~g----------~~PP~lIfVQs~eRak~L~~~L~~~----~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----------FKPPVLIFVQSKERAKQLFEELEIY----DNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----------CCCCeEEEEecHHHHHHHHHHhhhc----cCcceeeEecccchhHHHHHH
Confidence 46677777777777777542 5788999999999999999998722 57899999998665443 3
Q ss_pred HHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 391 ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 391 ~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
..++. ...+||+| ++|.+| ++|..+++||-++.-.
T Consensus 432 ~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 432 ERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 44444 48899999 777776 9999999999987643
No 253
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=86.14 E-value=5.4 Score=42.40 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=54.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
...++||.|++++-+..++..+... ++.+..++|+.+.......+ + ...+||||| +++. ..+++.
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiDip 312 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLDIE 312 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCCcc
Confidence 3457899999999999888877643 57788899998776554333 3 358999999 4444 457888
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.|++||.=+.
T Consensus 313 ~v~~VI~~~~ 322 (456)
T PRK10590 313 ELPHVVNYEL 322 (456)
T ss_pred cCCEEEEeCC
Confidence 8888775443
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.09 E-value=0.8 Score=42.69 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
.++++++.+++|+|||... ..+...+... +.. ++.+.+.+|..++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-----------g~~-v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLA-VAIANEAIRK-----------GYS-VLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHH-HHHHHHHHHT-----------T---EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHH-HHHHHHhccC-----------Ccc-eeEeecCceecccc
Confidence 6789999999999999653 3344444332 223 44566777877664
No 255
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.91 E-value=2 Score=46.03 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=27.8
Q ss_pred CcEEEEcCCCCCcceeehhH-HHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 306 KSCILADQSGSGKTLAYLLP-VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLP-iL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
..+++.+++|+||| +|+- +.+.+... ..+.+++++ +..++..++...+
T Consensus 142 npl~i~G~~G~GKT--HLl~Ai~~~l~~~---------~~~~~v~yv-~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKT--HLLKAAKNYIESN---------FSDLKVSYM-SGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHH--HHHHHHHHHHHHh---------CCCCeEEEE-EHHHHHHHHHHHH
Confidence 45899999999999 3333 33333321 123455554 4466666655544
No 256
>PHA00729 NTP-binding motif containing protein
Probab=85.74 E-value=2.3 Score=41.52 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=13.0
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
++++.+++|+|||.
T Consensus 19 nIlItG~pGvGKT~ 32 (226)
T PHA00729 19 SAVIFGKQGSGKTT 32 (226)
T ss_pred EEEEECCCCCCHHH
Confidence 79999999999984
No 257
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.69 E-value=2.3 Score=46.11 Aligned_cols=40 Identities=33% Similarity=0.449 Sum_probs=29.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|+++--.+.+++.|.. .+..| +.+|+++|.|+|||.+.
T Consensus 10 ~~f~dliGQe~vv~~L~~---------------a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRN---------------AFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCccHHHHH
Confidence 689998667888877753 12223 46899999999999743
No 258
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.47 E-value=5.5 Score=41.74 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|+++.-|..++..+.. .++.+..++|+....++...+ + ..++||||| +++ ...+++..
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~-----~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~-~rGiDip~ 323 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAA-----DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVA-ARGLHIPA 323 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHh-----CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chh-hcCCCccc
Confidence 45899999999999988887764 357889999988776654433 2 458999999 333 45678888
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
|+++|.-+
T Consensus 324 v~~VI~~d 331 (423)
T PRK04837 324 VTHVFNYD 331 (423)
T ss_pred cCEEEEeC
Confidence 88877554
No 259
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.45 E-value=5.3 Score=41.86 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
...++||.|++++-+..++..+.. .++.+..+.|+.....+...+ + ..++|||+| +++ ...+++.
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~-----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~-~~GiDip 312 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRK-----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVA-ARGIDID 312 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHh-----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-ccCccCC
Confidence 346899999999999999988875 357888999988776654433 3 348999999 334 3456788
Q ss_pred CcccEEE
Q 013623 420 NLRWYAR 426 (439)
Q Consensus 420 ~Lr~LVl 426 (439)
.+.+||.
T Consensus 313 ~v~~VI~ 319 (434)
T PRK11192 313 DVSHVIN 319 (434)
T ss_pred CCCEEEE
Confidence 8888874
No 260
>PRK13764 ATPase; Provisional
Probab=85.33 E-value=0.8 Score=50.76 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=31.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
.+++++++++.+++.+. ...++++++++||||||. ++-.++..+.
T Consensus 238 ~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 238 LSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred CCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46788888776554432 246789999999999996 4455666654
No 261
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.21 E-value=1.9 Score=41.47 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=16.5
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHH
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
-+++.+++|+|||= .+-.+.+.+.
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~ 59 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQ 59 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHH
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHH
Confidence 48999999999996 2333444443
No 262
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=85.13 E-value=0.92 Score=47.45 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=30.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
.+|+++|+++.+++.+. ..+..+++++|||||||.. +-.++..+.
T Consensus 130 ~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 130 PDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 36788888887655442 1234689999999999853 355666554
No 263
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=85.13 E-value=3.2 Score=48.23 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.8
Q ss_pred EEEEcCCCCCcceee
Q 013623 308 CILADQSGSGKTLAY 322 (439)
Q Consensus 308 vli~ApTGSGKTlay 322 (439)
++|.++||+|||++-
T Consensus 784 LYIyG~PGTGKTATV 798 (1164)
T PTZ00112 784 LYISGMPGTGKTATV 798 (1164)
T ss_pred EEEECCCCCCHHHHH
Confidence 359999999999764
No 264
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.12 E-value=3.1 Score=44.26 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCCcceee
Q 013623 305 GKSCILADQSGSGKTLAY 322 (439)
Q Consensus 305 GrDvli~ApTGSGKTlay 322 (439)
++.+++.+|||+|||...
T Consensus 221 ~~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTL 238 (424)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999653
No 265
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=85.05 E-value=2.4 Score=44.82 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=51.6
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH-HHHHHHHHHhhhcCCCCceEEEEEC
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL-ASQVLSNCRSLSKCGVPFRSMVVTG 382 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL-A~Qi~~~l~~L~k~~~~i~v~~l~G 382 (439)
.++-+++.+|||-|||....=-+....... ...-.+||-+-|--. |..+.+.+-.+ .++.+.+++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~---------~~~kVaiITtDtYRIGA~EQLk~Ya~i----m~vp~~vv~~ 268 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK---------KKKKVAIITTDTYRIGAVEQLKTYADI----MGVPLEVVYS 268 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc---------cCcceEEEEeccchhhHHHHHHHHHHH----hCCceEEecC
Confidence 378899999999999876332222222111 123345665555443 22233333333 3466667776
Q ss_pred CCChHHHHHHhcCCCcEEEEChHH
Q 013623 383 GFRQKTQLENLQEGVDVLIATPGR 406 (439)
Q Consensus 383 g~~~~~q~~~L~~g~dILVaTPgr 406 (439)
.......+..+.+.=.|||=|-|+
T Consensus 269 ~~el~~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 269 PKELAEAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHHHHHHHhhcCCEEEEeCCCC
Confidence 666666666666655677888764
No 266
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.02 E-value=2.7 Score=39.95 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.++.+++.+++|+|||-
T Consensus 41 ~~~~~~l~G~~G~GKT~ 57 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSH 57 (227)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 35679999999999984
No 267
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=84.94 E-value=1.2 Score=50.06 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=37.8
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.+++++||||||||..|++|-|-... -.+||+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~--------------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK--------------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC--------------CCEEEEeCCchHHHHHHHHHHhC
Confidence 58999999999999999999764331 14688888888887776666543
No 268
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=84.93 E-value=5.8 Score=44.59 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHH---Hhc-CCCcEEEEChHHHHHHHHhCCCCC
Q 013623 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQ-EGVDVLIATPGRFMFLIKEGILQL 418 (439)
Q Consensus 343 ~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~---~L~-~g~dILVaTPgrLldlL~~~~l~L 418 (439)
..+.++||+|+|+..+..+.+.+... ++.+..+.|+........ .++ ...+|+||| +++. ..+++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDi 508 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDL 508 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeee
Confidence 35778999999999999999888754 467777878766544322 333 458999999 4444 56788
Q ss_pred CCcccEEEeCCccc
Q 013623 419 INLRWYARTASLNI 432 (439)
Q Consensus 419 ~~Lr~LVlDEAD~f 432 (439)
..++++|+-|+|.|
T Consensus 509 P~v~lVvi~Dadif 522 (655)
T TIGR00631 509 PEVSLVAILDADKE 522 (655)
T ss_pred CCCcEEEEeCcccc
Confidence 89999999888765
No 269
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=84.92 E-value=5.9 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCCcceee
Q 013623 306 KSCILADQSGSGKTLAY 322 (439)
Q Consensus 306 rDvli~ApTGSGKTlay 322 (439)
+-+++++++|+|||...
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45778899999999754
No 270
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.86 E-value=0.56 Score=45.94 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=21.0
Q ss_pred HhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 302 VVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
+..+.+++++++||||||.. +-.++..+
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i 151 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEI 151 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred cccceEEEEECCCccccchH-HHHHhhhc
Confidence 44678999999999999964 35555554
No 271
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.67 E-value=1.8 Score=48.46 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
.+++++.|+||||||..+++|.|-.. +-.+||+=|-.|+...+....+
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~--------------~~S~VV~D~KGE~~~~Tag~R~ 222 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW--------------GHSSVITDLKGELWALTAGWRQ 222 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC--------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 36899999999999999999977432 2257888999999776655543
No 272
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.55 E-value=4.1 Score=43.36 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCCcceee
Q 013623 306 KSCILADQSGSGKTLAY 322 (439)
Q Consensus 306 rDvli~ApTGSGKTlay 322 (439)
+.+++++|||+|||...
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 57899999999999754
No 273
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=84.16 E-value=1 Score=44.75 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=22.0
Q ss_pred HHHHhhhHh--cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 295 QAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 295 Q~~aIP~iL--sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
|.+.|-.++ .+.-+++.++||||||.. +..++..+
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 444443333 234689999999999964 34455554
No 274
>PRK04195 replication factor C large subunit; Provisional
Probab=84.00 E-value=6 Score=42.50 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=29.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcce
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTl 320 (439)
++|.++-.++..++.|...= ..|..=...+.+++.+|+|+|||.
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l---------~~~~~g~~~~~lLL~GppG~GKTt 54 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWI---------ESWLKGKPKKALLLYGPPGVGKTS 54 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHH---------HHHhcCCCCCeEEEECCCCCCHHH
Confidence 67999988888887775520 111100014689999999999995
No 275
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=83.77 E-value=2.5 Score=44.87 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
..+++.+++|+|||.
T Consensus 149 ~~l~l~G~~G~GKTh 163 (450)
T PRK00149 149 NPLFIYGGVGLGKTH 163 (450)
T ss_pred CeEEEECCCCCCHHH
Confidence 468999999999995
No 276
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.61 E-value=1.8 Score=43.01 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCCcceeeh
Q 013623 306 KSCILADQSGSGKTLAYL 323 (439)
Q Consensus 306 rDvli~ApTGSGKTlayl 323 (439)
.|+++.+|+|+|||.+.+
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 489999999999998753
No 277
>PRK08084 DNA replication initiation factor; Provisional
Probab=83.51 E-value=1.9 Score=41.84 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCCcce
Q 013623 305 GKSCILADQSGSGKTL 320 (439)
Q Consensus 305 GrDvli~ApTGSGKTl 320 (439)
+..+++.+|+|+|||-
T Consensus 45 ~~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 45 SGYIYLWSREGAGRSH 60 (235)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4689999999999994
No 278
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=83.36 E-value=1.1 Score=46.43 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH-HHHHHHHHHHhhh
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE-LASQVLSNCRSLS 369 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE-LA~Qi~~~l~~L~ 369 (439)
-.++.+..|||||.+..+-++..+... ..+.++|++.++.. |..-++..+....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~sl~~sv~~~l~~~i 57 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN---------KKQQNILAARKVQNSIRDSVFKDIENLL 57 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc---------CCCcEEEEEehhhhHHHHHHHHHHHHHH
Confidence 367889999999999988888877653 13467899999988 5555666666544
No 279
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.26 E-value=4.7 Score=41.80 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEE-c-----------CcHHHHHHHHHHHHhhhcCC
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL-A-----------PTAELASQVLSNCRSLSKCG 372 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLIL-v-----------PTrELA~Qi~~~l~~L~k~~ 372 (439)
+|=+++.+|+|+|||. .+-++.|++.-. .....+++.+| . -+--|+.++++.++.|...
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR-------~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d- 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIR-------TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED- 247 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheee-------ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC-
Confidence 4558999999999993 334445554221 11222333322 2 2345788888888888874
Q ss_pred CCceEEEEECC
Q 013623 373 VPFRSMVVTGG 383 (439)
Q Consensus 373 ~~i~v~~l~Gg 383 (439)
.+.-++++...
T Consensus 248 ~~~lVfvLIDE 258 (423)
T KOG0744|consen 248 RGNLVFVLIDE 258 (423)
T ss_pred CCcEEEEEeHH
Confidence 55666666543
No 280
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.93 E-value=2.6 Score=42.92 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=37.2
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHH-hhhHhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA-FPPVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~a-IP~iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.+..|..-.+++.- |.+ +..+++.|..- |-++..+++++++++||||||. ++.+++..+
T Consensus 108 ~IRk~~~~~~t~~~---l~~--~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 108 TIRKFSDEPITPED---LIE--YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred EEEcCCCCCCCHHH---Hhh--cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 34445544444433 323 34566666664 4455588999999999999994 455555555
No 281
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.78 E-value=5.5 Score=42.51 Aligned_cols=16 Identities=31% Similarity=0.464 Sum_probs=13.5
Q ss_pred cEEEEcCCCCCcceee
Q 013623 307 SCILADQSGSGKTLAY 322 (439)
Q Consensus 307 Dvli~ApTGSGKTlay 322 (439)
-+++++++|+|||...
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4889999999999753
No 282
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=82.51 E-value=5.8 Score=42.36 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+++++++|+|||..
T Consensus 102 vi~lvG~~GvGKTTt 116 (429)
T TIGR01425 102 VIMFVGLQGSGKTTT 116 (429)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999854
No 283
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.47 E-value=0.8 Score=48.26 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHhcCCCCCCCcccCCCchhhhhccccccccCCCCCCCC
Q 013623 3 GRVEQVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPNPVGRP 52 (439)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (439)
|-.|..-+|+.-+-.|---.+--++| +.--+||+|.++.-+|.+-++.
T Consensus 5 g~~~~ak~ar~~al~G~~d~~~~~~~--g~~~~~~r~l~s~~d~~~~~k~ 52 (491)
T KOG0738|consen 5 GISENAKLAREYALLGNYDSAGIYYR--GLLYLMNRYLVSTGDPYAQGKW 52 (491)
T ss_pred hHHHHHHHHHHHHHhcCcchhHHHHH--hHHHHHHHHHhccCCcccchHH
Confidence 44455666666665553222222233 3456899999998888776643
No 284
>PRK14974 cell division protein FtsY; Provisional
Probab=82.45 E-value=6.8 Score=40.48 Aligned_cols=15 Identities=27% Similarity=0.497 Sum_probs=13.0
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
=+++.+++|+|||..
T Consensus 142 vi~~~G~~GvGKTTt 156 (336)
T PRK14974 142 VIVFVGVNGTGKTTT 156 (336)
T ss_pred EEEEEcCCCCCHHHH
Confidence 478999999999964
No 285
>PRK10436 hypothetical protein; Provisional
Probab=82.45 E-value=1.3 Score=47.76 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=31.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.+|++||+++..++.|.++ ....+--+++++|||||||... ..++..+
T Consensus 195 ~~L~~LG~~~~~~~~l~~~--------------~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQA--------------LQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCHHHcCcCHHHHHHHHHH--------------HHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3677777777766555331 1113446899999999999753 4456555
No 286
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=82.19 E-value=4.9 Score=47.52 Aligned_cols=82 Identities=20% Similarity=0.144 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCC
Q 013623 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQL 418 (439)
Q Consensus 343 ~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L 418 (439)
.++.++.+|.|-.+=..++...++.|. +..++.+..|-....+....+ ....|||||| -+-+..++.
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T------TIIEtGIDI 871 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT------TIIETGIDI 871 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe------eeeecCcCC
Confidence 468899999999999999999999885 568999999988776654333 4679999999 234567899
Q ss_pred CCcccEEEeCCccch
Q 013623 419 INLRWYARTASLNIE 433 (439)
Q Consensus 419 ~~Lr~LVlDEAD~fe 433 (439)
.+...|||+-||+|.
T Consensus 872 PnANTiIIe~AD~fG 886 (1139)
T COG1197 872 PNANTIIIERADKFG 886 (1139)
T ss_pred CCCceEEEecccccc
Confidence 999999999999986
No 287
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=82.08 E-value=1.3 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.--+++++|||||||... ..++..+
T Consensus 316 ~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 345889999999999653 4566555
No 288
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=82.02 E-value=2 Score=48.30 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=36.9
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
..++++.||||||||..|++|-|-... --+||+=|-.|+........++
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~--------------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP--------------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC--------------CCEEEEeCcchHHHHHHHHHHh
Confidence 368999999999999999999765431 1457777888887766655444
No 289
>PRK06893 DNA replication initiation factor; Validated
Probab=82.01 E-value=2.3 Score=40.96 Aligned_cols=15 Identities=20% Similarity=0.124 Sum_probs=12.9
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
..+++.+|+|+|||-
T Consensus 40 ~~l~l~G~~G~GKTh 54 (229)
T PRK06893 40 PFFYIWGGKSSGKSH 54 (229)
T ss_pred CeEEEECCCCCCHHH
Confidence 447999999999994
No 290
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.97 E-value=1.2 Score=46.41 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=29.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.+|+++++++.+.+.+. ..+.-+++++|||||||... -.++..+
T Consensus 115 ~~l~~l~~~~~~~~~~~------------------~~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 115 PKLSKLDLPAAIIDAIA------------------PQEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred CCHHHcCCCHHHHHHHh------------------ccCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 46888887765443321 14677999999999998643 4445444
No 291
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.96 E-value=2.8 Score=43.07 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=29.5
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
.+.++++.++||+|||.. +..+...+... +.. ++..+..+|..++..
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~~-----------g~~-V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLDR-----------GKS-VIYRTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHC-----------CCe-EEEEEHHHHHHHHHH
Confidence 358999999999999952 22344444321 334 445566777776644
No 292
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=81.88 E-value=1.5 Score=40.74 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCCHHHHHHhhhHh-cCCcEEEEcCCCCCccee
Q 013623 290 RPSQIQAMAFPPVV-EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTla 321 (439)
..++-|...+...+ .|..++++++||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34566777666655 689999999999999964
No 293
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=81.86 E-value=1.2 Score=46.84 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=23.3
Q ss_pred hhhHhcCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 299 IP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
||.-...+++++.|+||||||.+ +..++..+.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~ 67 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIR 67 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 55555678999999999999974 444555443
No 294
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=81.83 E-value=1.6 Score=41.78 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=54.0
Q ss_pred EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChH
Q 013623 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~ 387 (439)
.++.+|-.||||. -+|+++.... ..+-++++..|-..- - ++.+ .+..-.|-
T Consensus 7 ~~i~gpM~SGKT~----eLl~r~~~~~--------~~g~~v~vfkp~iD~----------R--~~~~-~V~Sr~G~---- 57 (201)
T COG1435 7 EFIYGPMFSGKTE----ELLRRARRYK--------EAGMKVLVFKPAIDT----------R--YGVG-KVSSRIGL---- 57 (201)
T ss_pred EEEEccCcCcchH----HHHHHHHHHH--------HcCCeEEEEeccccc----------c--cccc-eeeeccCC----
Confidence 5789999999997 4555554433 235566776662111 0 0000 01111111
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhh
Q 013623 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 388 ~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
.-.-++|-.+..+.+.+....-++. +++|.||||+-|..++
T Consensus 58 -------~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~~~ 98 (201)
T COG1435 58 -------SSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDEEL 98 (201)
T ss_pred -------cccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCHHH
Confidence 1134667777778888876544444 8999999999888654
No 295
>PF12846 AAA_10: AAA-like domain
Probab=81.78 E-value=1.4 Score=42.68 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
+++++|.++||||||.... .++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~ 25 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQL 25 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHH
Confidence 3689999999999996655 444443
No 296
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=81.65 E-value=9.7 Score=41.40 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=52.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCCcc
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLR 422 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~Lr 422 (439)
++||.|.|+..|..+...+... ++++..++|+.......+.+ + ...+||||| |+. -..+++..|.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----Dva-aRGiDi~~v~ 343 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVA-ARGLDIPDVS 343 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chh-hccCCccccc
Confidence 7999999999999988777654 58899999999887665544 2 458999999 444 4567777787
Q ss_pred cEE
Q 013623 423 WYA 425 (439)
Q Consensus 423 ~LV 425 (439)
+||
T Consensus 344 ~Vi 346 (513)
T COG0513 344 HVI 346 (513)
T ss_pred eeE
Confidence 775
No 297
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.41 E-value=2.6 Score=44.86 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=46.9
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECC
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg 383 (439)
.|.-+.++++||+|||.....-+-..+... .....++|.+.+...+ ..+++..++.. .++.+..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~---------~~~~v~~i~~d~~rig--alEQL~~~a~i-lGvp~~~v~~~ 257 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH---------GADKVALLTTDSYRIG--GHEQLRIYGKL-LGVSVRSIKDI 257 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc---------CCCeEEEEecCCcchh--HHHHHHHHHHH-cCCceecCCCH
Confidence 466689999999999975432222222111 1112456666663332 12223333331 23444444433
Q ss_pred CChHHHHHHhcCCCcEEEEChHHHH
Q 013623 384 FRQKTQLENLQEGVDVLIATPGRFM 408 (439)
Q Consensus 384 ~~~~~q~~~L~~g~dILVaTPgrLl 408 (439)
......+..+...-.|+|-|+|+..
T Consensus 258 ~dl~~al~~l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 258 ADLQLMLHELRGKHMVLIDTVGMSQ 282 (420)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCc
Confidence 3333334444444568888887653
No 298
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.29 E-value=4.4 Score=44.91 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=28.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC--c-EEEEcCCCCCcceeehh
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--S-CILADQSGSGKTLAYLL 324 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr--D-vli~ApTGSGKTlaylL 324 (439)
++|+++--.+.+++.|+. .+.+|+ + +|+.+|.|+|||.+..+
T Consensus 10 ~~f~eivGq~~i~~~L~~---------------~i~~~r~~ha~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSS---------------ALDAGRINHAYLFSGPRGCGKTSSARI 54 (584)
T ss_pred CcHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 578888667777777644 122332 3 58999999999976533
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.25 E-value=3 Score=43.93 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCCcceee
Q 013623 305 GKSCILADQSGSGKTLAY 322 (439)
Q Consensus 305 GrDvli~ApTGSGKTlay 322 (439)
.+.+++.+|||+|||.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999764
No 300
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=81.20 E-value=5.8 Score=39.25 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=47.2
Q ss_pred EEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH-H---HHHHhhhcCCCCceEEEEECCC
Q 013623 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-L---SNCRSLSKCGVPFRSMVVTGGF 384 (439)
Q Consensus 309 li~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi-~---~~l~~L~k~~~~i~v~~l~Gg~ 384 (439)
++.++.|+|||.+..+-++..+.... ....+++. +|..-+.++ . ..+..+......+.........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~---------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP---------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS---------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC---------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc
Confidence 46789999999988877777765431 12455555 555554442 2 3333343311122221111110
Q ss_pred ChHHHHHHhcCCCcEEEEChHH--HHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 385 RQKTQLENLQEGVDVLIATPGR--FMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 385 ~~~~q~~~L~~g~dILVaTPgr--LldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
. .+.+|..|.+.+-.. -..-++- ..+.++++||+.....
T Consensus 71 -~-----~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 71 -I-----ILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPD 111 (384)
T ss_dssp -E-----EETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTT
T ss_pred -E-----EecCceEEEEeccccccccccccc-----cccceeeeeecccCch
Confidence 0 013556666655322 1122222 3478999999876643
No 301
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=81.14 E-value=7 Score=44.77 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=28.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC---cEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK---SCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr---Dvli~ApTGSGKTla 321 (439)
++|+++--.+.+++.|.+. +-.++ -+|++++.|+|||.+
T Consensus 13 qtFdEVIGQe~Vv~~L~~a---------------L~~gRL~HAyLFtGPpGvGKTTl 54 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHA---------------LDGGRLHHAYLFTGTRGVGKTTL 54 (830)
T ss_pred CcHHHHcCcHHHHHHHHHH---------------HhcCCCCeEEEEECCCCCCHHHH
Confidence 6899997788888877552 22332 358999999999964
No 302
>PRK11823 DNA repair protein RadA; Provisional
Probab=81.13 E-value=3.7 Score=43.93 Aligned_cols=53 Identities=28% Similarity=0.415 Sum_probs=34.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|.-+++.+++|+|||.. ++-++..+.. .+-+++|+. +.|-..|+...++.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-----------~g~~vlYvs-~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTL-LLQVAARLAA-----------AGGKVLYVS-GEESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHH-HHHHHHHHHh-----------cCCeEEEEE-ccccHHHHHHHHHHcC
Confidence 356789999999999963 3333333321 134667776 4566677777776664
No 303
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=81.12 E-value=11 Score=42.73 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=50.5
Q ss_pred CCCCHHHHHHhhhHh---cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV---EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL---sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+-|+|.=.+-|..++ +.+-.++.+|-|-|||++-.+.++..+.. .+.+++|.+|...-+++++..+
T Consensus 168 ~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----------~Gi~IlvTAH~~~ts~evF~rv 236 (752)
T PHA03333 168 EAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----------LEIDIVVQAQRKTMCLTLYNRV 236 (752)
T ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----------cCCeEEEECCChhhHHHHHHHH
Confidence 344665555555544 55678889999999998765555433311 2568999999999999999887
Q ss_pred Hhhhc
Q 013623 366 RSLSK 370 (439)
Q Consensus 366 ~~L~k 370 (439)
+.+..
T Consensus 237 ~~~le 241 (752)
T PHA03333 237 ETVVH 241 (752)
T ss_pred HHHHH
Confidence 77765
No 304
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.11 E-value=5.8 Score=44.33 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=53.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---hc-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|+|+.-+.+++..|... ++.+..++|+.+...+... ++ ...+|||+| +++. ..+++..
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~a-rGIDip~ 313 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAA-RGLDVER 313 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHh-cCCCccc
Confidence 357899999999999998888653 5678889998877655333 33 358999999 4454 4478888
Q ss_pred cccEEE
Q 013623 421 LRWYAR 426 (439)
Q Consensus 421 Lr~LVl 426 (439)
|.+||.
T Consensus 314 V~~VI~ 319 (629)
T PRK11634 314 ISLVVN 319 (629)
T ss_pred CCEEEE
Confidence 888875
No 305
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=81.04 E-value=11 Score=37.30 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=26.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.+|.++--++++++.|... ++.. ...++++.+++|+|||.+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-------i~~~------~~~~~ll~G~~G~GKt~~ 54 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSY-------VKEK------NMPHLLFAGPPGTGKTTA 54 (319)
T ss_pred CcHHHhcCcHHHHHHHHHH-------HhCC------CCCeEEEECCCCCCHHHH
Confidence 5677776666777766542 0000 113589999999999954
No 306
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=80.89 E-value=1.5 Score=45.78 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=32.8
Q ss_pred hhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 300 P~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
|.-...+++++.+.||||||. ++-.++..+... +-++||.=|.-++....++
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~-----------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR-----------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT-----------T-EEEEEEETTHHHHHH--
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc-----------CCEEEEEECCchHHHHhcC
Confidence 444567899999999999996 446666666443 4467777777777554443
No 307
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=80.86 E-value=3.5 Score=45.77 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=29.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|.++--.+.+++.|.. .+..| +.+|+++|.|+|||...
T Consensus 21 ~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHH
Confidence 689999778888877754 12233 35899999999999654
No 308
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=80.49 E-value=2.1 Score=47.84 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..++++.|+||||||..+++|-+-.. +.-+||+=|-.|+...+....+++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~--------------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW--------------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC--------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 46899999999999999999975322 123577778889888777666554
No 309
>PRK05642 DNA replication initiation factor; Validated
Probab=80.45 E-value=2.7 Score=40.72 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
..+++.+++|+|||-
T Consensus 46 ~~l~l~G~~G~GKTH 60 (234)
T PRK05642 46 SLIYLWGKDGVGRSH 60 (234)
T ss_pred CeEEEECCCCCCHHH
Confidence 568999999999994
No 310
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=80.29 E-value=2 Score=40.76 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=34.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|.-+++.+++|||||.-.+--+...+... +-.+++++ +.+-..++.+.++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-----------ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-----------GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-----------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 467899999999999965433344444430 12456555 5666677777777663
No 311
>PTZ00110 helicase; Provisional
Probab=80.28 E-value=8.1 Score=42.30 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=54.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---hcC-CCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQE-GVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L~~-g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.|+|+.-|..+...++. .++.+..++|+....++... ++. ...|||+| +++ ...+++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~-----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~-~rGIDi~ 444 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL-----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVA-SRGLDVK 444 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH-----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chh-hcCCCcc
Confidence 467999999999999998888763 35678889998877655333 333 47899999 333 4567888
Q ss_pred CcccEEEeC
Q 013623 420 NLRWYARTA 428 (439)
Q Consensus 420 ~Lr~LVlDE 428 (439)
.|++||.=+
T Consensus 445 ~v~~VI~~d 453 (545)
T PTZ00110 445 DVKYVINFD 453 (545)
T ss_pred cCCEEEEeC
Confidence 888887543
No 312
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=80.18 E-value=3.6 Score=39.05 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.|..+++.+++|+|||...+--+.+.+.. +-.++++. +-+.+.++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~------------g~~~~~is-~e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD------------GDPVIYVT-TEESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc------------CCeEEEEE-ccCCHHHHHHHHHHh
Confidence 47889999999999986433223333211 23455555 344555665554444
No 313
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=80.18 E-value=2.9 Score=43.15 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHCCCCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcce
Q 013623 280 IESLKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTL 320 (439)
Q Consensus 280 l~aL~~~gf~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTl 320 (439)
+..|.+.|+ .++.+...+..+. .+.+++++++||||||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT 193 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT 193 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 444555555 3455666655544 56799999999999985
No 314
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=80.10 E-value=5.5 Score=43.46 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc----CCCcEEEEChHHHHHHHHhCCCC
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQ 417 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~----~g~dILVaTPgrLldlL~~~~l~ 417 (439)
...+.++||.|-|+.-|.++...++.. ++.+.++.|+.+..+....|. ..+.|||||- +--+.++
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLD 406 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLD 406 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCC
Confidence 346779999999999999998888753 478999999998877655553 3489999992 2346788
Q ss_pred CCCcccEEE
Q 013623 418 LINLRWYAR 426 (439)
Q Consensus 418 L~~Lr~LVl 426 (439)
+..|++||-
T Consensus 407 i~dV~lVIn 415 (519)
T KOG0331|consen 407 VPDVDLVIN 415 (519)
T ss_pred CccccEEEe
Confidence 999998884
No 315
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=80.03 E-value=6.5 Score=43.79 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCCeEEEEcCcHH--------HHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHH
Q 013623 344 GSPRVVILAPTAE--------LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLI 411 (439)
Q Consensus 344 ~gp~aLILvPTrE--------LA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL 411 (439)
.+.+++|+||+.+ -+.++++.+.... .++++.++.|+.+..+....+ . ...+|||+|. ++
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi 518 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VI 518 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ee
Confidence 4568999999864 2334444444332 468899999998776554333 3 3589999994 33
Q ss_pred HhCCCCCCCcccEEEeCCccch
Q 013623 412 KEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 412 ~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
...+++.+++++|+..++.|.
T Consensus 519 -e~GvDiP~v~~VIi~~~~r~g 539 (630)
T TIGR00643 519 -EVGVDVPNATVMVIEDAERFG 539 (630)
T ss_pred -ecCcccCCCcEEEEeCCCcCC
Confidence 457889999999999887653
No 316
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=79.82 E-value=1.6 Score=43.28 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
.++++.+|+|+|||.
T Consensus 31 ~~~ll~Gp~G~GKT~ 45 (305)
T TIGR00635 31 DHLLLYGPPGLGKTT 45 (305)
T ss_pred CeEEEECCCCCCHHH
Confidence 469999999999994
No 317
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=79.72 E-value=5.1 Score=42.70 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=13.2
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
..+++.+++|+|||-
T Consensus 131 n~l~lyG~~G~GKTH 145 (440)
T PRK14088 131 NPLFIYGGVGLGKTH 145 (440)
T ss_pred CeEEEEcCCCCcHHH
Confidence 469999999999994
No 318
>PRK06921 hypothetical protein; Provisional
Probab=79.71 E-value=6.8 Score=38.92 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.+.++++.+++|+|||... ..++..+... .+..++++ +..+|..++...
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~----------~g~~v~y~-~~~~l~~~l~~~ 164 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK----------KGVPVLYF-PFVEGFGDLKDD 164 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh----------cCceEEEE-EHHHHHHHHHHH
Confidence 3678999999999999422 2334444321 13444554 456666665443
No 319
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=79.69 E-value=13 Score=39.31 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=54.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|+|++-+..++..+... ++.+..++|+....++...+ + ...+|||+| +.+ ...+++..
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~-~rGiDi~~ 310 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVA-ARGLDIKA 310 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----ccc-ccccchhc
Confidence 347899999999999999888653 57788999998876654433 2 348999999 333 34577888
Q ss_pred cccEEEeCC
Q 013623 421 LRWYARTAS 429 (439)
Q Consensus 421 Lr~LVlDEA 429 (439)
++++|.-+.
T Consensus 311 v~~VI~~d~ 319 (460)
T PRK11776 311 LEAVINYEL 319 (460)
T ss_pred CCeEEEecC
Confidence 888886554
No 320
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=79.61 E-value=13 Score=38.81 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEE-EEECCCChHHHHHHhcCC-CcEEEEChHHHHHHHHhCCCCCCCc
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVTGGFRQKTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINL 421 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~-~l~Gg~~~~~q~~~L~~g-~dILVaTPgrLldlL~~~~l~L~~L 421 (439)
.+.-++|.+|+.+...|+...+++... ..++. +..-+....+.++.+++| .+|||+| .+|+ +.+.+.+|
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~---~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILE-RGVTfp~v 374 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLP---KETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILE-RGVTFPNV 374 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCC---ccceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhh-cccccccc
Confidence 455689999999999999999965533 24433 334455667778888766 8999999 3444 56778899
Q ss_pred ccEEEeCCcc
Q 013623 422 RWYARTASLN 431 (439)
Q Consensus 422 r~LVlDEAD~ 431 (439)
+.+|++--|.
T Consensus 375 dV~Vlgaeh~ 384 (441)
T COG4098 375 DVFVLGAEHR 384 (441)
T ss_pred eEEEecCCcc
Confidence 9999987663
No 321
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.44 E-value=1.9 Score=46.56 Aligned_cols=46 Identities=22% Similarity=0.412 Sum_probs=28.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhc-CC-cEEEEcCCCCCcceeehhHHHHHH
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GK-SCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLs-Gr-Dvli~ApTGSGKTlaylLPiL~~l 330 (439)
.+|+++|+++..++.| ..++. .+ -+++++|||||||... ..++..+
T Consensus 219 ~~l~~Lg~~~~~~~~l----------------~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 219 LDLETLGMSPELLSRF----------------ERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCHHHcCCCHHHHHHH----------------HHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3566666666655544 33332 23 3789999999998643 3345554
No 322
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=79.40 E-value=3.6 Score=47.02 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=19.6
Q ss_pred EChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 402 ATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 402 aTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
..||++...+...... -.+|+|||+|.+..
T Consensus 399 ~~~g~i~~~l~~~~~~---~~villDEidk~~~ 428 (775)
T TIGR00763 399 AMPGRIIQGLKKAKTK---NPLFLLDEIDKIGS 428 (775)
T ss_pred CCCchHHHHHHHhCcC---CCEEEEechhhcCC
Confidence 3578887776542211 13799999998854
No 323
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.23 E-value=8.4 Score=41.14 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=56.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+..+||.|+|+.-+.+++..++.. ++.+..+.|+....+....+ ...++|||+|- .+ ...+++.
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~-~~GID~p 293 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AF-GMGINKP 293 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hh-hccCCcc
Confidence 3556799999999999999888753 57788899988776553332 34589999993 23 3567888
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.+++||.-..
T Consensus 294 ~V~~VI~~~~ 303 (470)
T TIGR00614 294 DVRFVIHYSL 303 (470)
T ss_pred cceEEEEeCC
Confidence 8998887655
No 324
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=79.23 E-value=1.6 Score=42.18 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=35.5
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|.-+++.+++|+|||.-.+--+...+. .+-.+++++ +.|-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~------------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4678999999999999744333333332 244667776 5677777777776653
No 325
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=78.97 E-value=8.8 Score=41.64 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=54.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
.+++||.|+++.-+..+...+... .++++..+.|+....++...+ + ...+|||+|- .+ ...+++.+
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl-~rGiDip~ 436 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VL-GRGVDLLR 436 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hh-hccCCccc
Confidence 468999999999998888777643 357788899998776654433 2 3589999994 33 35678888
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
+++||.=+
T Consensus 437 v~~VI~~d 444 (518)
T PLN00206 437 VRQVIIFD 444 (518)
T ss_pred CCEEEEeC
Confidence 88888644
No 326
>PF13173 AAA_14: AAA domain
Probab=78.92 E-value=4.5 Score=35.08 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCCCcce
Q 013623 305 GKSCILADQSGSGKTL 320 (439)
Q Consensus 305 GrDvli~ApTGSGKTl 320 (439)
++-+++.++.|+|||.
T Consensus 2 ~~~~~l~G~R~vGKTt 17 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTT 17 (128)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4568999999999995
No 327
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=78.66 E-value=3.6 Score=46.49 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=29.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|.++--.+.+++.|... +..+ +.+|+.++.|+|||...
T Consensus 13 ~tFddIIGQe~vv~~L~~a---------------i~~~rl~Ha~Lf~GP~GvGKTTlA 55 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNA---------------LDEGRLHHAYLLTGTRGVGKTTIA 55 (709)
T ss_pred CCHHHHcCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCcHHHHH
Confidence 6899997788888877552 1122 45899999999999644
No 328
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=78.62 E-value=2.2 Score=38.71 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=30.5
Q ss_pred EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
+++.+++|+|||...+--+...+ . .+..++++. +.+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~-----------~g~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-A-----------RGEPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-H-----------CCCcEEEEE-CCCCHHHHHHHHHHc
Confidence 68999999999964322222222 1 244566664 556777777777666
No 329
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.29 E-value=0.97 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
+-.|+++++|||||||+. .-.|.+++
T Consensus 96 ~KSNILLiGPTGsGKTlL--AqTLAk~L 121 (408)
T COG1219 96 SKSNILLIGPTGSGKTLL--AQTLAKIL 121 (408)
T ss_pred eeccEEEECCCCCcHHHH--HHHHHHHh
Confidence 345899999999999963 33444443
No 330
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=78.20 E-value=4.9 Score=39.48 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=12.9
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
++++.+|+|.|||.
T Consensus 52 h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 52 HMLFYGPPGLGKTT 65 (233)
T ss_dssp EEEEESSTTSSHHH
T ss_pred eEEEECCCccchhH
Confidence 69999999999984
No 331
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=77.90 E-value=8.7 Score=43.25 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCeEEEEcCcHH--------HHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHH
Q 013623 344 GSPRVVILAPTAE--------LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLI 411 (439)
Q Consensus 344 ~gp~aLILvPTrE--------LA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL 411 (439)
.+-+++|+||+.+ -+.++++.+.+.. .++++..+.|+.+..+....+ + ...+|||+|- ++
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi 541 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF---PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VI 541 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ce
Confidence 4568999999653 2334444444332 247899999998776554433 3 3479999993 33
Q ss_pred HhCCCCCCCcccEEEeCCccch
Q 013623 412 KEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 412 ~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
...+++.+++++|+..++.|.
T Consensus 542 -e~GiDip~v~~VIi~~~~r~g 562 (681)
T PRK10917 542 -EVGVDVPNATVMVIENAERFG 562 (681)
T ss_pred -eeCcccCCCcEEEEeCCCCCC
Confidence 456888999999999998763
No 332
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=77.82 E-value=5.2 Score=37.36 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCCcceeeh
Q 013623 304 EGKSCILADQSGSGKTLAYL 323 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlayl 323 (439)
.|.=+.+.+++|+|||...+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45668999999999997543
No 333
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=77.78 E-value=2.9 Score=46.70 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=37.5
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.++++.||||||||..+++|-+-.. +--+||+=|-.|++..+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~--------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY--------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC--------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 6899999999999999999964322 124688888888887776655544
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=77.48 E-value=18 Score=37.07 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
++-+++++|+|+|||..
T Consensus 114 ~~vi~lvGpnGsGKTTt 130 (318)
T PRK10416 114 PFVILVVGVNGVGKTTT 130 (318)
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45688999999999864
No 335
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.40 E-value=16 Score=38.93 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=51.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---hc-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|++++-+..++..+... ++.+..+.|+....++... ++ ....|||+| +++ ...+++..
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l-~~GIDi~~ 403 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVA-GRGIHIDG 403 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-ccCCcccC
Confidence 458999999999999988777543 4678888898877665333 33 347899999 333 24456666
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
|+++|.-.
T Consensus 404 v~~VI~~~ 411 (475)
T PRK01297 404 ISHVINFT 411 (475)
T ss_pred CCEEEEeC
Confidence 77666543
No 336
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=77.16 E-value=3.9 Score=44.54 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=28.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
.+|.++--.+.+++.|.. .+..+ +.+|+++|.|+|||.+.
T Consensus 18 ~~f~dliGq~~vv~~L~~---------------ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSY---------------TILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHH
Confidence 578888767777776643 12333 36899999999999654
No 337
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.05 E-value=1.5 Score=48.53 Aligned_cols=40 Identities=5% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCCcEEEEChHHHHHHHHh---CCC---CCCCcccE-EEeCCccchh
Q 013623 395 EGVDVLIATPGRFMFLIKE---GIL---QLINLRWY-ARTASLNIES 434 (439)
Q Consensus 395 ~g~dILVaTPgrLldlL~~---~~l---~L~~Lr~L-VlDEAD~fe~ 434 (439)
.++.|..+|-..|...+.+ +.+ +|.+.++| +-||||++-.
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 4688999999998777754 233 45555544 4599998753
No 338
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.02 E-value=5.8 Score=43.02 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=26.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|+++--.+.++..|.. .+.++ +-+++.+|.|+|||.+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~---------------~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQN---------------ALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred CCHHHHhChHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 578888656666665533 12223 24799999999999654
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=76.90 E-value=8.4 Score=40.32 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=32.1
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|.=+++.+++|+|||.. ++-++..+.. .+-+++|+.- .|-..|+...+..+.
T Consensus 81 ~GslvLI~G~pG~GKStL-llq~a~~~a~-----------~g~~VlYvs~-EEs~~qi~~Ra~rlg 133 (372)
T cd01121 81 PGSVILIGGDPGIGKSTL-LLQVAARLAK-----------RGGKVLYVSG-EESPEQIKLRADRLG 133 (372)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHh-----------cCCeEEEEEC-CcCHHHHHHHHHHcC
Confidence 356789999999999963 3333333322 1235677654 345567766666553
No 340
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.70 E-value=9.8 Score=42.55 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=27.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|+++--++.+.+.|.+ .+.++ ..+|+.+|.|+|||.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~---------------ai~~~ri~ha~Lf~GPpG~GKTtiA 55 (624)
T PRK14959 13 QTFAEVAGQETVKAILSR---------------AAQENRVAPAYLFSGTRGVGKTTIA 55 (624)
T ss_pred CCHHHhcCCHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHH
Confidence 578888667777666644 11222 35789999999999754
No 341
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=76.63 E-value=12 Score=42.06 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=27.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC--c-EEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--S-CILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr--D-vli~ApTGSGKTlay 322 (439)
++|+++--.+.+++.|.. .+..|+ + +|+.++.|+|||.+.
T Consensus 13 ~~f~divGQe~vv~~L~~---------------~l~~~rl~hAyLf~Gp~GvGKTTlA 55 (647)
T PRK07994 13 QTFAEVVGQEHVLTALAN---------------ALDLGRLHHAYLFSGTRGVGKTTIA 55 (647)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 578888667777776643 222333 2 589999999999654
No 342
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=76.52 E-value=15 Score=37.83 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=51.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
.+.++||+++|+.-++.++..++... .++.+..+.|......+.... ..+|||||. ++. ..+++..+ +
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~---~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~-rGiDi~~~-~ 338 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG---LGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVD-VGVDFKRD-W 338 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC---CCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHh-cccCCCCc-e
Confidence 35589999999999999999988642 346677788877766554332 478999994 444 44666655 6
Q ss_pred EEEe
Q 013623 424 YART 427 (439)
Q Consensus 424 LVlD 427 (439)
+|+|
T Consensus 339 vi~~ 342 (357)
T TIGR03158 339 LIFS 342 (357)
T ss_pred EEEC
Confidence 6665
No 343
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.48 E-value=3.1 Score=44.78 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+..+.|++.+|+|||.+
T Consensus 175 ~gSlYVsG~PGtgkt~~ 191 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTAL 191 (529)
T ss_pred CcceEeeCCCCcchHHH
Confidence 46899999999999975
No 344
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=76.37 E-value=7.5 Score=37.41 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=30.9
Q ss_pred EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEc---CcHHHHHHHHHHHHhh
Q 013623 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA---PTAELASQVLSNCRSL 368 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILv---PTrELA~Qi~~~l~~L 368 (439)
.++.|+.|+|||...+--++....-...-........+-++||+. |..++..++......+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 578999999999654433333221111100001112345678887 4445555555444433
No 345
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=76.24 E-value=18 Score=37.81 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCCCCCcccEEEeCCccchhhhc
Q 013623 405 GRFMFLIKEGILQLINLRWYARTASLNIESHFS 437 (439)
Q Consensus 405 grLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~~ 437 (439)
.+|+..|..+....+.--++|+||.|.|..+.+
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r 154 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSR 154 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchh
Confidence 345666666555555546789999999988754
No 346
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=76.11 E-value=29 Score=28.79 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHH---HHhc-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~---~~L~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||++++..-+.++...+.+ ....+..+.|+....... ..+. ....|||+|.- -...+++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~------~~~G~d~~ 95 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV------IARGIDLP 95 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh------hhcCcChh
Confidence 355789999999999999988876 245678888887654332 2233 34689999842 23456777
Q ss_pred CcccEEEeCCc
Q 013623 420 NLRWYARTASL 430 (439)
Q Consensus 420 ~Lr~LVlDEAD 430 (439)
.++++|+....
T Consensus 96 ~~~~vi~~~~~ 106 (131)
T cd00079 96 NVSVVINYDLP 106 (131)
T ss_pred hCCEEEEeCCC
Confidence 78888887764
No 347
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=75.92 E-value=8.1 Score=42.30 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=54.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---cC-CCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---QE-GVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~~-g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
..|.+||.+.+..-|.-+...|.++ +++++.+.|+....+....| +. ..+|+|||- . --..++..
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----v-AgRGIDIp 584 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----V-AGRGIDIP 584 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----c-cccCCCCC
Confidence 4688999999999988888888765 47899999998887664444 33 589999994 2 23457777
Q ss_pred CcccEE
Q 013623 420 NLRWYA 425 (439)
Q Consensus 420 ~Lr~LV 425 (439)
+|.+||
T Consensus 585 nVSlVi 590 (673)
T KOG0333|consen 585 NVSLVI 590 (673)
T ss_pred ccceee
Confidence 777766
No 348
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.78 E-value=8.1 Score=40.91 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCCcceee
Q 013623 305 GKSCILADQSGSGKTLAY 322 (439)
Q Consensus 305 GrDvli~ApTGSGKTlay 322 (439)
++-+++++|+|+|||...
T Consensus 206 ~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTL 223 (407)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999653
No 349
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=75.76 E-value=3.1 Score=47.10 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=12.3
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
.+++.+|||+|||.
T Consensus 486 ~~lf~Gp~GvGKT~ 499 (731)
T TIGR02639 486 SFLFTGPTGVGKTE 499 (731)
T ss_pred eEEEECCCCccHHH
Confidence 47999999999993
No 350
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=75.03 E-value=25 Score=39.45 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHH---Hhc-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~---~L~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||+|.|+.-+..+...+.. .++++..+.|+.....+.. .++ ..++|+||| +.+. ..+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~-----~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~-rGfdlp 513 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKE-----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDIP 513 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhh-----cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHh-CCcccc
Confidence 467899999999999998888764 3578888888766544322 222 358899999 3444 567888
Q ss_pred CcccEEEeCCccc
Q 013623 420 NLRWYARTASLNI 432 (439)
Q Consensus 420 ~Lr~LVlDEAD~f 432 (439)
.++++|+=|++.|
T Consensus 514 ~v~lVii~d~eif 526 (652)
T PRK05298 514 EVSLVAILDADKE 526 (652)
T ss_pred CCcEEEEeCCccc
Confidence 8999988777653
No 351
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=74.96 E-value=7.2 Score=38.52 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCCcce
Q 013623 303 VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTl 320 (439)
-.|+-+++.++.|+|||.
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 378899999999999994
No 352
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=74.93 E-value=5.9 Score=49.83 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
..+++.|.+|+-.++.+ +-++|++..|+|||... -.++..+... . ...+..++.++||..-|.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l-~~~~~~i~~~-~------~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTML-ESRYKPVLQA-F------ESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhH-HHHHHHHHHH-H------HhcCCeEEEEeChHHHHHHHH
Confidence 46899999999999866 45788999999999543 1122222111 0 023567899999988877664
No 353
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.92 E-value=5 Score=46.59 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=26.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--Cc-EEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KS-CILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rD-vli~ApTGSGKTlay 322 (439)
++|+++-=.+.+++.|+++ +..+ .+ +|+.+|.|+|||.+.
T Consensus 13 ~tFddIIGQe~Iv~~Lkna---------------I~~~rl~HAyLFtGPpGtGKTTLA 55 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNA---------------LTQQRLHHAYLFTGTRGVGKTSLA 55 (944)
T ss_pred CCHHHhcCcHHHHHHHHHH---------------HHhCCCCeEEEEECCCCCCHHHHH
Confidence 5788885567777666432 1222 24 489999999999654
No 354
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=74.56 E-value=0.92 Score=42.80 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=11.6
Q ss_pred EEEEcCCCCCcce
Q 013623 308 CILADQSGSGKTL 320 (439)
Q Consensus 308 vli~ApTGSGKTl 320 (439)
++|.|+.|||||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 5799999999996
No 355
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=74.43 E-value=2.7 Score=43.14 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.+..+++++|||||||... -.++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 3567999999999999643 3444444
No 356
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=2.6 Score=49.43 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=35.9
Q ss_pred cccccccCCCHHHHHHHHHCCCC---CCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFL---RPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~---~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
...|+++|.-..++..|+++-+. +|..+|...| .--+-++.++|.|||||+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---tpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI---TPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc---CCCcceeecCCCCCchhHH
Confidence 46899999999999999886432 2222222222 2246799999999999963
No 357
>PTZ00424 helicase 45; Provisional
Probab=74.35 E-value=21 Score=36.70 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=53.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|+|++-+..+...+.. .++.+..++|+.+..++...+ + ...+|||+| +.+ ...+++..
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~-----~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT-----~~l-~~GiDip~ 335 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHE-----RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITT-----DLL-ARGIDVQQ 335 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHH-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEc-----ccc-cCCcCccc
Confidence 45789999999998888877754 356788899998776654333 3 358999999 333 35678888
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
++++|.-.
T Consensus 336 v~~VI~~~ 343 (401)
T PTZ00424 336 VSLVINYD 343 (401)
T ss_pred CCEEEEEC
Confidence 88888644
No 358
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.31 E-value=2.7 Score=45.49 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=27.1
Q ss_pred CHHHHHHhhhHhcCCc--EEEEcCCCCCcceeehhHHHHHHHH
Q 013623 292 SQIQAMAFPPVVEGKS--CILADQSGSGKTLAYLLPVIQRLRQ 332 (439)
Q Consensus 292 TpIQ~~aIP~iLsGrD--vli~ApTGSGKTlaylLPiL~~l~~ 332 (439)
++.|.+.+-.++.... +++.+|||||||.. +..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 4556666666665443 88999999999964 4556666543
No 359
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=74.23 E-value=15 Score=41.70 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCC--------ChHHHHHHh---cC-CCcEEEEChHHHHH
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF--------RQKTQLENL---QE-GVDVLIATPGRFMF 409 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~--------~~~~q~~~L---~~-g~dILVaTPgrLld 409 (439)
.....|+||.+-||+.|..+..++..+.. .+++..+++|-. +...|.+.+ +. ..+|||||-
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~~~--~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS----- 482 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQLHE--LGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS----- 482 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhhhh--cccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec-----
Confidence 46678999999999999999999998544 678888887743 444454444 33 489999993
Q ss_pred HHHhCCCCCCCcccEEEe
Q 013623 410 LIKEGILQLINLRWYART 427 (439)
Q Consensus 410 lL~~~~l~L~~Lr~LVlD 427 (439)
+-+..++...|.+||.=
T Consensus 483 -V~EEGLDI~ec~lVIcY 499 (746)
T KOG0354|consen 483 -VAEEGLDIGECNLVICY 499 (746)
T ss_pred -chhccCCcccccEEEEe
Confidence 33456777777777643
No 360
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=74.22 E-value=13 Score=41.64 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=28.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceeeh
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYL 323 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlayl 323 (439)
++|+++--.+.+++.|.. .+..+ +-+|++++.|+|||.+..
T Consensus 13 ~~f~dviGQe~vv~~L~~---------------~l~~~rl~ha~Lf~Gp~GvGKTtlAr 56 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTN---------------ALTQQRLHHAYLFTGTRGVGKTTVSR 56 (618)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 678888557788777755 12222 235999999999997543
No 361
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=73.97 E-value=8.8 Score=43.75 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=54.9
Q ss_pred HHHCCCCCCCHHHHHHhhhHhcCC--cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHH
Q 013623 283 LKRQNFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (439)
Q Consensus 283 L~~~gf~~pTpIQ~~aIP~iLsGr--Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Q 360 (439)
|.++..+.+..-|.+.+..++..+ -+++.|.-|=||+.+.=+.+....... ...+++|-+|+.+-++.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~----------~~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA----------GSVRIIVTAPTPANVQT 276 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc----------CCceEEEeCCCHHHHHH
Confidence 555555666666666777777543 589999999999988776663322111 14688999999999998
Q ss_pred HHHHHHhhhc
Q 013623 361 VLSNCRSLSK 370 (439)
Q Consensus 361 i~~~l~~L~k 370 (439)
++..+.+-+.
T Consensus 277 Lf~fa~~~l~ 286 (758)
T COG1444 277 LFEFAGKGLE 286 (758)
T ss_pred HHHHHHHhHH
Confidence 8877665544
No 362
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=73.93 E-value=2.1 Score=42.23 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=20.2
Q ss_pred HhhhHhcCCcEEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrDvli~ApTGSGKTlay 322 (439)
++-.+..|+++++.+++|+|||...
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 4445668999999999999999653
No 363
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=73.90 E-value=27 Score=36.28 Aligned_cols=14 Identities=29% Similarity=0.074 Sum_probs=12.2
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
+.+.+++|||||..
T Consensus 129 tEI~G~~GsGKTql 142 (344)
T PLN03187 129 TEAFGEFRSGKTQL 142 (344)
T ss_pred EEEecCCCCChhHH
Confidence 67999999999973
No 364
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=73.70 E-value=7.9 Score=43.78 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=56.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECC
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg 383 (439)
.|.=+++.+|+|.|||- |+..|++.+.+ --+....||
T Consensus 349 kGpILcLVGPPGVGKTS------------------------------------LgkSIA~al~R-------kfvR~sLGG 385 (782)
T COG0466 349 KGPILCLVGPPGVGKTS------------------------------------LGKSIAKALGR-------KFVRISLGG 385 (782)
T ss_pred CCcEEEEECCCCCCchh------------------------------------HHHHHHHHhCC-------CEEEEecCc
Confidence 44557889999999993 55555554432 124456788
Q ss_pred CChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhhc
Q 013623 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHFS 437 (439)
Q Consensus 384 ~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~~ 437 (439)
..-...++-=++ --|=+=|||++.-|++-... ==+++|||+|.+...|+
T Consensus 386 vrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 386 VRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFR 434 (782)
T ss_pred cccHHHhccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCC
Confidence 876666543332 23445699999999873321 13688999998877664
No 365
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=73.10 E-value=29 Score=40.18 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=30.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceeehhH
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLP 325 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlaylLP 325 (439)
++|.++--++.+++.|+.+ +.++ +-+|+.++.|+|||.+..+-
T Consensus 12 ~~f~eiiGqe~v~~~L~~~---------------i~~~ri~Ha~Lf~Gp~G~GKTt~A~~l 57 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTA---------------LDSGRINHAYLFSGPRGCGKTSSARIL 57 (824)
T ss_pred CCHHHhcCcHHHHHHHHHH---------------HHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 6899987788888777542 2222 23689999999999765443
No 366
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=4.1 Score=46.48 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=12.6
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
.+++.+|||.|||.
T Consensus 523 sFlF~GPTGVGKTE 536 (786)
T COG0542 523 SFLFLGPTGVGKTE 536 (786)
T ss_pred EEEeeCCCcccHHH
Confidence 58999999999994
No 367
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.93 E-value=8.1 Score=41.31 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCCcceee
Q 013623 306 KSCILADQSGSGKTLAY 322 (439)
Q Consensus 306 rDvli~ApTGSGKTlay 322 (439)
.-+++++|+|+|||...
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999754
No 368
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=72.89 E-value=9.3 Score=42.88 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCCeEEEEcCcHHHHH-----HHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhC
Q 013623 344 GSPRVVILAPTAELAS-----QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEG 414 (439)
Q Consensus 344 ~gp~aLILvPTrELA~-----Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~ 414 (439)
.|-++.+|||..|=.. -....+..|..+...+++.++.|..+..+....+ + ...||||+|- +-+=
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT------VIEV 545 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT------VIEV 545 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee------EEEe
Confidence 5789999999876432 2333344444333578899999998865543333 3 4699999992 1233
Q ss_pred CCCCCCcccEEEeCCccch
Q 013623 415 ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 415 ~l~L~~Lr~LVlDEAD~fe 433 (439)
.+++.+-.++||..|+.|.
T Consensus 546 GVdVPnATvMVIe~AERFG 564 (677)
T COG1200 546 GVDVPNATVMVIENAERFG 564 (677)
T ss_pred cccCCCCeEEEEechhhhh
Confidence 5788888899999998764
No 369
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=72.89 E-value=8.2 Score=47.54 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=45.8
Q ss_pred CCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
.+++-|..|+-.++.. +-++|++..|+|||... -.++..+... ....+..++.++||-.-|.++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l-~~i~~~~~~l-------~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQF-RAVMSAVNML-------PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHH-HHHHHHHHHH-------hhccCceEEEEechHHHHHHHH
Confidence 6899999999999955 67999999999999542 1122222110 0124567889999988877653
No 370
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=72.88 E-value=5.6 Score=46.05 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=12.8
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
.+++.+|||+|||..
T Consensus 598 ~~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 598 VFLLVGPSGVGKTET 612 (852)
T ss_pred EEEEECCCCCCHHHH
Confidence 379999999999953
No 371
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.68 E-value=13 Score=41.93 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=27.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|.++--.+.+.+.|.. .+.+| +-+|+.+|.|+|||.+.
T Consensus 12 ktFddVIGQe~vv~~L~~---------------aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 12 RNFNELVGQNHVSRALSS---------------ALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 578888657777666643 22233 34699999999999643
No 372
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.56 E-value=7.9 Score=41.46 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=13.2
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
+.+++.+++|+|||-
T Consensus 142 npl~L~G~~G~GKTH 156 (445)
T PRK12422 142 NPIYLFGPEGSGKTH 156 (445)
T ss_pred ceEEEEcCCCCCHHH
Confidence 458999999999984
No 373
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.48 E-value=8.4 Score=36.71 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=29.8
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEc---CcHHHHHHH
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA---PTAELASQV 361 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILv---PTrELA~Qi 361 (439)
..|.=+++.|++|+|||. |++-++.++... .+..++++. +..+++.++
T Consensus 11 ~~G~l~lI~G~~G~GKT~-~~~~~~~~~~~~----------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTA-FALNIAENIAKK----------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHH-HHHHHHHHHHHh----------CCCceEEEeCCCCHHHHHHHH
Confidence 356778999999999994 445544444332 144567776 344554443
No 374
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=72.43 E-value=4.7 Score=45.16 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH--HHHHHHHHHHhhhc
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE--LASQVLSNCRSLSK 370 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE--LA~Qi~~~l~~L~k 370 (439)
..+++|.++||+|||..+.+-+.+.+.. +..++|+=|-.. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~------------g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR------------GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 4789999999999997764444444422 345677777654 77778888777643
No 375
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=72.41 E-value=14 Score=40.86 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=54.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+..+||.|+|+.-+.+++..++.. ++.+..++++.+.......+ ....+|||+|. ++ ...+++.
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~-~~GIDip 303 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AF-GMGINKP 303 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hh-hccCCCC
Confidence 3457899999999999998888753 57788888888765543332 24589999994 23 3567888
Q ss_pred CcccEEEeC
Q 013623 420 NLRWYARTA 428 (439)
Q Consensus 420 ~Lr~LVlDE 428 (439)
+|++||.-.
T Consensus 304 ~V~~VI~~d 312 (607)
T PRK11057 304 NVRFVVHFD 312 (607)
T ss_pred CcCEEEEeC
Confidence 888887544
No 376
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=72.24 E-value=7.8 Score=37.72 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=58.4
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcC---cHHHHHHHHHHHHhhhcCCCCceEEEE
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP---TAELASQVLSNCRSLSKCGVPFRSMVV 380 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvP---TrELA~Qi~~~l~~L~k~~~~i~v~~l 380 (439)
.|.=+++.|.||.|||. |++-++.++... .+..+++++. ..+++..+......+.. ..++.
T Consensus 18 ~g~L~vi~a~pg~GKT~-~~l~ia~~~a~~----------~~~~vly~SlEm~~~~l~~R~la~~s~v~~--~~i~~--- 81 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTA-FALQIALNAALN----------GGYPVLYFSLEMSEEELAARLLARLSGVPY--NKIRS--- 81 (259)
T ss_dssp TT-EEEEEESTTSSHHH-HHHHHHHHHHHT----------TSSEEEEEESSS-HHHHHHHHHHHHHTSTH--HHHHC---
T ss_pred cCcEEEEEecccCCchH-HHHHHHHHHHHh----------cCCeEEEEcCCCCHHHHHHHHHHHhhcchh--hhhhc---
Confidence 34557889999999995 555555554432 1356677764 35555554444332211 00111
Q ss_pred ECCCChHHH------HHHhcCCCcEEEECh----HHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 381 TGGFRQKTQ------LENLQEGVDVLIATP----GRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 381 ~Gg~~~~~q------~~~L~~g~dILVaTP----grLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
|.....+. ...+....-.+..+| ..|...++.-......+++||||-.+.+..
T Consensus 82 -g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 82 -GDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp -CGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred -cccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 22211111 112333222334444 456655554333336789999999887664
No 377
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=72.18 E-value=13 Score=46.39 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=46.2
Q ss_pred CCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~ 362 (439)
..+++-|..|+..++.+ +-++|++..|+|||... -.++..+... ....+..++.++||..-|.+..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l-------~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL-------PESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh-------hcccCceEEEECCcHHHHHHHH
Confidence 36899999999999975 56899999999999532 2233332211 0123567888999998777654
No 378
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.89 E-value=6.2 Score=42.97 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=27.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|+++--.+.+++.|... +..+ +-+|+.+|.|+|||.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~---------------~~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNA---------------LDQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CCHHHhcCCHHHHHHHHHH---------------HHhCCCCeeEEEECCCCCCHHHHH
Confidence 5799986677777777441 1222 23689999999999654
No 379
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=71.62 E-value=2.4 Score=42.24 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCCCcce
Q 013623 303 VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTl 320 (439)
..++.+++++|+|+|||.
T Consensus 31 ~~~~pvLl~G~~GtGKT~ 48 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTS 48 (272)
T ss_dssp HCTEEEEEESSTTSSHHH
T ss_pred HcCCcEEEECCCCCchhH
Confidence 378899999999999996
No 380
>PRK10867 signal recognition particle protein; Provisional
Probab=71.60 E-value=24 Score=37.77 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.3
Q ss_pred cEEEEcCCCCCcceee
Q 013623 307 SCILADQSGSGKTLAY 322 (439)
Q Consensus 307 Dvli~ApTGSGKTlay 322 (439)
-+++++++|+|||...
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4789999999999653
No 381
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=71.45 E-value=0.38 Score=45.29 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=39.8
Q ss_pred EEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHH
Q 013623 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (439)
Q Consensus 309 li~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~ 388 (439)
++.|+-|-||+.+.-+.+...+.. ...+++|-+|+.+-++.+++.+..-+.. .+++.... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~-~~~~~~~~----~~~~ 64 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-----------GKIRILVTAPSPENVQTLFEFAEKGLKA-LGYKEEKK----KRIG 64 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------------EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-----------cCceEEEecCCHHHHHHHHHHHHhhccc-cccccccc----cccc
Confidence 578999999987654443333221 1257899999999988888776554431 22222000 0000
Q ss_pred HHH-HhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 389 QLE-NLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 389 q~~-~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
+.. .......|-.-.|..+...- ...++||||||=.+
T Consensus 65 ~~~~~~~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaI 102 (177)
T PF05127_consen 65 QIIKLRFNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAI 102 (177)
T ss_dssp --------CCC--B--HHHHCCT-----------SCEEECTGGGS
T ss_pred cccccccccceEEEECCHHHHhCc-------CCCCEEEEechhcC
Confidence 000 01123456666666553322 13589999999444
No 382
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.06 E-value=17 Score=41.00 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=28.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|+++--.+.+++.|.+ .+.++ +-+|++++.|+|||...
T Consensus 13 qtFddVIGQe~vv~~L~~---------------al~~gRLpHA~LFtGP~GvGKTTLA 55 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTH---------------ALEQQRLHHAYLFTGTRGVGKTTLS 55 (700)
T ss_pred CcHHHHcCcHHHHHHHHH---------------HHHhCCCceEEEEECCCCCCHHHHH
Confidence 579998777887777644 12223 23699999999999643
No 383
>PRK05973 replicative DNA helicase; Provisional
Probab=71.06 E-value=5.1 Score=39.37 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHCCCC----------CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCC
Q 013623 274 GCSDYMIESLKRQNFL----------RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (439)
Q Consensus 274 gL~~~Ll~aL~~~gf~----------~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~ 343 (439)
.|++.+=+.-.+-||. .+||... .+.-+..|.-++|.|++|+|||.-.+--+.+.+ .
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~----------- 90 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAM-K----------- 90 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-h-----------
Confidence 3444444444555664 4455322 334455677899999999999964333333332 1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.+-.++|+. .-+=..|+.+.+..+
T Consensus 91 ~Ge~vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 91 SGRTGVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred cCCeEEEEE-EeCCHHHHHHHHHHc
Confidence 133556664 344456777777665
No 384
>PRK05748 replicative DNA helicase; Provisional
Probab=70.90 E-value=15 Score=39.06 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=19.6
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
..|.=++|.|.||+|||. |.+-++.++
T Consensus 201 ~~G~livIaarpg~GKT~-~al~ia~~~ 227 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTA-FALNIAQNV 227 (448)
T ss_pred CCCceEEEEeCCCCCchH-HHHHHHHHH
Confidence 345668899999999994 555555554
No 385
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=70.71 E-value=6 Score=44.36 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcH--HHHHHHHHHHHhhhc
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA--ELASQVLSNCRSLSK 370 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTr--ELA~Qi~~~l~~L~k 370 (439)
..+++|.++||+|||..+.+-+.+.+. .+..++++=|-. +|...++..|+...+
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~------------~g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIR------------RGDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 468999999999999887666666553 245677887766 688888888888765
No 386
>PRK08506 replicative DNA helicase; Provisional
Probab=70.40 E-value=8.5 Score=41.45 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|.=+++.|.||.|||. |++-++.++
T Consensus 191 ~G~LivIaarpg~GKT~-fal~ia~~~ 216 (472)
T PRK08506 191 KGDLIIIAARPSMGKTT-LCLNMALKA 216 (472)
T ss_pred CCceEEEEcCCCCChHH-HHHHHHHHH
Confidence 45568889999999995 555555444
No 387
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.32 E-value=21 Score=39.51 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=28.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTlay 322 (439)
++|+++--.+.+.+.|.. .+.+| +-+|+.+|.|+|||.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~---------------~i~~~~~~hayLf~Gp~G~GKtt~A 55 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQN---------------AIDTGRVAHAFLFTGARGVGKTSTA 55 (576)
T ss_pred CCHHHccCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 679998767777777744 12223 23589999999999754
No 388
>PRK09694 helicase Cas3; Provisional
Probab=70.26 E-value=28 Score=40.63 Aligned_cols=77 Identities=17% Similarity=0.377 Sum_probs=51.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH-------HHHh-cCC----CcEEEEChHHHHHHH
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ-------LENL-QEG----VDVLIATPGRFMFLI 411 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q-------~~~L-~~g----~dILVaTPgrLldlL 411 (439)
.+-++||+++|.+-|+++++.+++... ....+.++.+....... +..+ +++ ..|||+| .++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT-----QVi 631 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT-----QVV 631 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC-----cch
Confidence 356899999999999999999986532 34678889988765433 2222 222 3699999 334
Q ss_pred HhCCCCCCCcccEEEeCC
Q 013623 412 KEGILQLINLRWYARTAS 429 (439)
Q Consensus 412 ~~~~l~L~~Lr~LVlDEA 429 (439)
++ .+++ .++++|.|-+
T Consensus 632 E~-GLDI-d~DvlItdla 647 (878)
T PRK09694 632 EQ-SLDL-DFDWLITQLC 647 (878)
T ss_pred hh-eeec-CCCeEEECCC
Confidence 33 3344 2567777655
No 389
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=70.16 E-value=16 Score=42.26 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=55.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcC----CCcEEEEChHHHHHHHHhCCCCCCCc
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE----GVDVLIATPGRFMFLIKEGILQLINL 421 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~----g~dILVaTPgrLldlL~~~~l~L~~L 421 (439)
..+||.+|+++-+.++++.++.... .++.+..++|+.+..+|...+.. ...|||+|. + -+..+++..|
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----I-AErgItIp~V 281 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----I-AETSLTIEGI 281 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----h-HhhcccccCc
Confidence 4689999999999999888876432 46889999999998888776642 368999994 3 3456777888
Q ss_pred ccEEEe
Q 013623 422 RWYART 427 (439)
Q Consensus 422 r~LVlD 427 (439)
++| ||
T Consensus 282 ~~V-ID 286 (819)
T TIGR01970 282 RVV-ID 286 (819)
T ss_pred eEE-EE
Confidence 855 55
No 390
>CHL00095 clpC Clp protease ATP binding subunit
Probab=69.96 E-value=4.8 Score=46.27 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.2
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
.+++++|||+|||.
T Consensus 541 ~~lf~Gp~GvGKt~ 554 (821)
T CHL00095 541 SFLFSGPTGVGKTE 554 (821)
T ss_pred EEEEECCCCCcHHH
Confidence 37899999999994
No 391
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=69.91 E-value=17 Score=41.98 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=56.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcC----CCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE----GVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~----g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
...+||.+|++.-+.++++.++.... .++.+..++|+.+..+|...+.. ...|||+|. + -+..+++..
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----I-AErsLtIp~ 283 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----I-AETSLTIEG 283 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----h-HHhcccccC
Confidence 35789999999999999999886332 46888999999998887666642 368999995 3 345678888
Q ss_pred cccEEEe
Q 013623 421 LRWYART 427 (439)
Q Consensus 421 Lr~LVlD 427 (439)
|++| ||
T Consensus 284 V~~V-ID 289 (812)
T PRK11664 284 IRLV-VD 289 (812)
T ss_pred ceEE-EE
Confidence 8855 45
No 392
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=69.71 E-value=10 Score=42.41 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=12.5
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
.+++.+++|+|||-
T Consensus 316 pL~LyG~sGsGKTH 329 (617)
T PRK14086 316 PLFIYGESGLGKTH 329 (617)
T ss_pred cEEEECCCCCCHHH
Confidence 48999999999994
No 393
>PRK07004 replicative DNA helicase; Provisional
Probab=69.43 E-value=8.9 Score=41.18 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
..|.=+++.|.+|+|||. |.+-+..++
T Consensus 211 ~~g~liviaarpg~GKT~-~al~ia~~~ 237 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTA-FSMNIGEYV 237 (460)
T ss_pred CCCceEEEEeCCCCCccH-HHHHHHHHH
Confidence 345668889999999995 555555444
No 394
>PRK12608 transcription termination factor Rho; Provisional
Probab=69.41 E-value=10 Score=39.94 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=23.5
Q ss_pred HHHHHHhhhHh---cCCcEEEEcCCCCCccee
Q 013623 293 QIQAMAFPPVV---EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 293 pIQ~~aIP~iL---sGrDvli~ApTGSGKTla 321 (439)
.+-.++|..++ .|+-++|.|+.|+|||..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL 149 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL 149 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH
Confidence 45566777766 788999999999999953
No 395
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=69.34 E-value=19 Score=35.51 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.4
Q ss_pred cCCc-EEEEcCCCCCcceee
Q 013623 304 EGKS-CILADQSGSGKTLAY 322 (439)
Q Consensus 304 sGrD-vli~ApTGSGKTlay 322 (439)
+..+ +++.+|.|+|||.+.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a 41 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAA 41 (325)
T ss_pred CCCceeeeeCCCCCCHHHHH
Confidence 3456 999999999999753
No 396
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=69.33 E-value=14 Score=34.87 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCcceeeh
Q 013623 305 GKSCILADQSGSGKTLAYL 323 (439)
Q Consensus 305 GrDvli~ApTGSGKTlayl 323 (439)
|.=+.+.+++|+|||...+
T Consensus 19 g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcEEEEeCCCCCChhHHHH
Confidence 5668999999999997544
No 397
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=69.27 E-value=19 Score=39.56 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=53.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+..+||.|+|+..+.+++..+.. .++.+..++|+.+.......+ ...++|||+|- .+ ...+++.+
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~-----~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-----a~-~~GID~p~ 292 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLES-----QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-----AF-GMGIDKPN 292 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHh-----CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-----hh-hccCcCCC
Confidence 45689999999999999888764 357788888888765543332 24589999993 23 34567888
Q ss_pred cccEEEeCC
Q 013623 421 LRWYARTAS 429 (439)
Q Consensus 421 Lr~LVlDEA 429 (439)
+++||.=..
T Consensus 293 v~~VI~~~~ 301 (591)
T TIGR01389 293 VRFVIHYDM 301 (591)
T ss_pred CCEEEEcCC
Confidence 888775433
No 398
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=69.12 E-value=4.6 Score=37.58 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.6
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.++..++.|.| ++..++||||||...
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~Tm 41 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEec
Confidence 56677788876 677889999999664
No 399
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=69.00 E-value=19 Score=37.88 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=20.2
Q ss_pred hHhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
-+..|.=+++.|++|+|||. |++-++.++
T Consensus 190 G~~~g~liviag~pg~GKT~-~al~ia~~~ 218 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTT-LALNIAENV 218 (421)
T ss_pred CCCCCceEEEEeCCCCCHHH-HHHHHHHHH
Confidence 34456678999999999995 555555444
No 400
>PRK12377 putative replication protein; Provisional
Probab=68.42 E-value=9.2 Score=37.76 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..++++.+++|+|||-. +..+.+.+... +.. ++.++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~-----------g~~-v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK-----------GRS-VIVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc-----------CCC-eEEEEHHHHHHHHHHH
Confidence 36899999999999842 23334444321 223 4555667888877543
No 401
>PRK09183 transposase/IS protein; Provisional
Probab=68.34 E-value=6.1 Score=39.05 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.0
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+-.|.++++.+|+|+|||..
T Consensus 99 i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHH
Confidence 44689999999999999853
No 402
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=67.48 E-value=0.99 Score=49.15 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.1
Q ss_pred HhcCCcEEEEcCCCCCcce
Q 013623 302 VVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTl 320 (439)
+..|.-+.+.++||||||.
T Consensus 352 i~~Ge~vaiVG~sGsGKST 370 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKST 370 (567)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 5578888899999999964
No 403
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=67.46 E-value=18 Score=38.43 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=31.6
Q ss_pred cccccccC-CCHHHHHHHHHCCCCC--CCHHHHHHhhhHh---cCCcEEEEcCCCCCcce
Q 013623 267 RKSFKELG-CSDYMIESLKRQNFLR--PSQIQAMAFPPVV---EGKSCILADQSGSGKTL 320 (439)
Q Consensus 267 ~~sF~elg-L~~~Ll~aL~~~gf~~--pTpIQ~~aIP~iL---sGrDvli~ApTGSGKTl 320 (439)
...|++|- ++|.-. ..+.. +.++-.++|..++ .|+=.+|.||.|+|||.
T Consensus 130 r~~f~~l~p~~p~~R-----~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTT 184 (416)
T PRK09376 130 RPLFENLTPLYPNER-----LRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTV 184 (416)
T ss_pred CCCcccCCCCChhhc-----ccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhH
Confidence 35677763 333322 22333 4555666666655 78889999999999994
No 404
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=67.43 E-value=24 Score=36.42 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=33.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHH
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~ 329 (439)
++|+++--.+.+++.|.+. ++. -..-+.++.+|+|+|||-+.++..-+.
T Consensus 33 kt~de~~gQe~vV~~L~~a-------~~~------~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNA-------LLR------RILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred CcHHhhcchHHHHHHHHHH-------Hhh------cCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 6788887777777777541 111 123578999999999998776554443
No 405
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=67.18 E-value=5.6 Score=47.33 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHH------HhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEE
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQE------ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~------~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~ 378 (439)
|+++++.-..|.|||.+-+.-.+...... ...............|||+|.--| .|=+..+.+-.. ..+++.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl-~QW~~EI~kH~~--~~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAIL-MQWFEEIHKHIS--SLLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHH-HHHHHHHHHhcc--ccceEE
Confidence 46778888999999998777666553211 011112222334568999997655 344444433332 234665
Q ss_pred EEECCCChH-HHHHHhcCCCcEEEEChHHHHHHHHh--------------CCCCCC----Ccc--cEEEeCCccchh
Q 013623 379 VVTGGFRQK-TQLENLQEGVDVLIATPGRFMFLIKE--------------GILQLI----NLR--WYARTASLNIES 434 (439)
Q Consensus 379 ~l~Gg~~~~-~q~~~L~~g~dILVaTPgrLldlL~~--------------~~l~L~----~Lr--~LVlDEAD~fe~ 434 (439)
...|-.... .+-..+ -.+||||+|-..|-.-|.. +.+.+. .|. -|+||||.+.+.
T Consensus 451 ~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred EEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 555432111 000111 2489999998877543321 112211 121 378999998875
No 406
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=66.87 E-value=8.8 Score=39.44 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
.|+=+.+.+|+|||||... +.++..... .+-.++++-.-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLa-L~~~~~~~~-----------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLA-LHAIAEAQK-----------AGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHH-----------cCCcEEEEcccchhHH
Confidence 4577899999999999644 333333322 2446677755444433
No 407
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=66.75 E-value=10 Score=42.11 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=53.7
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.+++-|.+++... ...++|.|..|||||.+-.-=+.+.+.... ...-+.|.|+=|+-.|.++.+.+.++.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~--------v~p~~Il~vTFTnkAA~em~~Rl~~~~ 71 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGG--------VDPEQILAITFTNKAAAEMRERLLKLL 71 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCC--------cChHHeeeeechHHHHHHHHHHHHHHh
Confidence 5788899988776 567889999999999876655665554421 112247899999999999998888886
Q ss_pred c
Q 013623 370 K 370 (439)
Q Consensus 370 k 370 (439)
.
T Consensus 72 ~ 72 (655)
T COG0210 72 G 72 (655)
T ss_pred C
Confidence 5
No 408
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=66.65 E-value=4.4 Score=44.75 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHhhh---HhcCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 277 DYMIESLKRQNFLRPSQIQAMAFPP---VVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 277 ~~Ll~aL~~~gf~~pTpIQ~~aIP~---iLsGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
.++.+.+++.+ +-+++...-+|. -...+++++.|+||||||. ++.-++..+.
T Consensus 147 ~~l~~~l~~~~--~~~~~~igg~pl~~~~~e~~h~li~G~tGsGKs~-~i~~ll~~~~ 201 (566)
T TIGR02759 147 KELIKKLKKSR--RASDIKIGGLPLIKFGSETQHILIHGTTGSGKSV-AIRKLLRWIR 201 (566)
T ss_pred HHHHHHHHhcC--CCCceeeCCccCCCCcccccceEEEcCCCCCHHH-HHHHHHHHHH
Confidence 34444554443 222333333444 3356799999999999995 3333555443
No 409
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.58 E-value=11 Score=38.73 Aligned_cols=50 Identities=30% Similarity=0.525 Sum_probs=29.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC-----cEEEEcCCCCCcceeehhHH
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK-----SCILADQSGSGKTLAYLLPV 326 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr-----Dvli~ApTGSGKTlaylLPi 326 (439)
.|.+.-=-+.--++|++.=+- || -+|.++.|+ -+++-+|+|+||+ ||.-+
T Consensus 131 kWsDVAGLE~AKeALKEAVIL---PI---KFPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKA 185 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVIL---PI---KFPQLFTGKRKPWRGILLYGPPGTGKS--YLAKA 185 (439)
T ss_pred chhhhccchhHHHHHHhheee---cc---cchhhhcCCCCcceeEEEeCCCCCcHH--HHHHH
Confidence 355542234445566553221 11 257777774 6999999999995 54433
No 410
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=66.36 E-value=34 Score=30.78 Aligned_cols=30 Identities=10% Similarity=-0.106 Sum_probs=17.7
Q ss_pred cEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 398 DVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 398 dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
-|+|+||+..-.+-..+...+..++++|+-
T Consensus 116 ~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~ 145 (148)
T cd03114 116 TVVVMAPGAGDDIQAIKAGIMEIADIVVVN 145 (148)
T ss_pred EEEEECCCchhHHHHhhhhHhhhcCEEEEe
Confidence 488999994433333344445556666654
No 411
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=66.14 E-value=8.9 Score=43.29 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=60.6
Q ss_pred EEEEcCCCCCcceeehhHHHH-HHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCCh
Q 013623 308 CILADQSGSGKTLAYLLPVIQ-RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~-~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~ 386 (439)
-|+.---|-|||..-+.-++. .....+ .......-..||+||+--+.+-.... .+..+ ...+.+.+.+|....
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~----~~~~~~~kttLivcp~s~~~qW~~el-ek~~~-~~~l~v~v~~gr~kd 228 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKE----EDRQKEFKTTLIVCPTSLLTQWKTEL-EKVTE-EDKLSIYVYHGRTKD 228 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcc----hhhccccCceeEecchHHHHHHHHHH-hccCC-ccceEEEEecccccc
Confidence 455556788998654333222 111110 00112445678889876664444444 66655 234666666661111
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 387 ~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
. . ....++|+|+|++.+.. ...+.+ ..-.+|+||||.+..
T Consensus 229 ~---~-el~~~dVVltTy~il~~---~~l~~i-~w~Riildea~~ikn 268 (674)
T KOG1001|consen 229 K---S-ELNSYDVVLTTYDILKN---SPLVKI-KWLRIVLDEAHTIKN 268 (674)
T ss_pred c---c-hhcCCceEEeeHHHhhc---ccccce-eEEEEEeccccccCC
Confidence 1 1 12357899999998753 111111 234589999997753
No 412
>PRK08006 replicative DNA helicase; Provisional
Probab=65.57 E-value=20 Score=38.63 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|.=+++.|.+|.|||. |.+-++.++
T Consensus 223 ~G~LiiIaarPgmGKTa-falnia~~~ 248 (471)
T PRK08006 223 PSDLIIVAARPSMGKTT-FAMNLCENA 248 (471)
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHH
Confidence 45557888999999994 555555554
No 413
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=65.28 E-value=13 Score=38.19 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=68.0
Q ss_pred CCCHHHHHHhhhHhc-CC---cEEEEcCCCCCcceeehhHHHHHHHHHHhhc----------cCCCCCCCCeEEEEcCc-
Q 013623 290 RPSQIQAMAFPPVVE-GK---SCILADQSGSGKTLAYLLPVIQRLRQEELQG----------LSKSTSGSPRVVILAPT- 354 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLs-Gr---Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~----------~~~~~~~gp~aLILvPT- 354 (439)
..+|.|...|..++. |+ -+++.+|.|.|||... ..+...+....... ........|-..++.|.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A-~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~ 81 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA-ERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE 81 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC
Confidence 347889999988774 32 4889999999998543 22333332211000 00112234667788774
Q ss_pred ---HHHHHHHHHHHHhhhcC--CCCceEEEEECCCChHHH-----HHHhc---CCCcEEEEC--hHHHHHHHHhC
Q 013623 355 ---AELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQ-----LENLQ---EGVDVLIAT--PGRFMFLIKEG 414 (439)
Q Consensus 355 ---rELA~Qi~~~l~~L~k~--~~~i~v~~l~Gg~~~~~q-----~~~L~---~g~dILVaT--PgrLldlL~~~ 414 (439)
.--+.||.+....+... ..+.+++++.....+... +..++ .++-+|..| |.+|+.-++.+
T Consensus 82 ~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 82 ADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh
Confidence 23456666665555432 235677777554433322 22333 245566666 56777666544
No 414
>PRK04328 hypothetical protein; Provisional
Probab=65.12 E-value=5.5 Score=38.97 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=33.1
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|.-+++.+++|+|||.-.+--+.+.+. .+-.++++. +.|-..++.+.++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~------------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4678999999999998643222333332 233556665 6666666777666653
No 415
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=64.56 E-value=28 Score=35.27 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=42.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHH-------HHhc-CCCcEEEECh
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL-------ENLQ-EGVDVLIATP 404 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~-------~~L~-~g~dILVaTP 404 (439)
+.++||+++|++-|..+++.+++.. ....+..+.|+....... ..++ ....|||+|.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 4689999999999999998887653 345788888887664432 2333 3478999995
No 416
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.44 E-value=5.2 Score=40.56 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=25.4
Q ss_pred cccccccCCCHHHHHHH-HHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL-~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+.+|++|+||+-+-+.- .+-| =+++.++|||||+..
T Consensus 107 IPt~eeL~LPevlk~la~~kRG-------------------LviiVGaTGSGKSTt 143 (375)
T COG5008 107 IPTFEELKLPEVLKDLALAKRG-------------------LVIIVGATGSGKSTT 143 (375)
T ss_pred CCcHHhcCCcHHHHHhhcccCc-------------------eEEEECCCCCCchhh
Confidence 46899999987654432 2222 378899999999765
No 417
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=64.40 E-value=14 Score=39.65 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCCcceee
Q 013623 306 KSCILADQSGSGKTLAY 322 (439)
Q Consensus 306 rDvli~ApTGSGKTlay 322 (439)
.-+++++++|+|||...
T Consensus 96 ~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTA 112 (437)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46889999999999653
No 418
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=64.36 E-value=12 Score=39.78 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=21.6
Q ss_pred CHHHHHHhhhHh---cCCcEEEEcCCCCCcce
Q 013623 292 SQIQAMAFPPVV---EGKSCILADQSGSGKTL 320 (439)
Q Consensus 292 TpIQ~~aIP~iL---sGrDvli~ApTGSGKTl 320 (439)
..+-.++|..++ .|+-+++.+++|+|||.
T Consensus 152 ~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTt 183 (415)
T TIGR00767 152 EDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTV 183 (415)
T ss_pred cccceeeeeeEEEeCCCCEEEEECCCCCChhH
Confidence 334445555544 78899999999999995
No 419
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=64.30 E-value=23 Score=40.14 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=69.0
Q ss_pred hHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCC-CCceEEE
Q 013623 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG-VPFRSMV 379 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~-~~i~v~~ 379 (439)
...+.+-.++..|--.|||+.-. +++..+... ..+.++++.+|.+.-++.+++.+..+.+.. .+-.+..
T Consensus 250 ~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s---------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~ 319 (738)
T PHA03368 250 RHFRQRATVFLVPRRHGKTWFLV-PLIALALAT---------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDH 319 (738)
T ss_pred HHhhccceEEEecccCCchhhHH-HHHHHHHHh---------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheee
Confidence 34456778889999999998655 777655432 247799999999999999999998876521 1111222
Q ss_pred EECCCChHHHHHHhcCCC--cEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 380 VTGGFRQKTQLENLQEGV--DVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 380 l~Gg~~~~~q~~~L~~g~--dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+.| ... .-.+.+|. -|..++- -..+...=...++||||||..+-+
T Consensus 320 vkG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 320 VKG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred ecC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH
Confidence 222 111 00112232 4444421 011222223589999999987654
No 420
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=64.11 E-value=5.7 Score=41.97 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=13.0
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
+=+++.+|.|+|||+
T Consensus 149 lgllL~GPPGcGKTl 163 (413)
T PLN00020 149 LILGIWGGKGQGKSF 163 (413)
T ss_pred eEEEeeCCCCCCHHH
Confidence 457899999999995
No 421
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=63.64 E-value=11 Score=41.21 Aligned_cols=147 Identities=15% Similarity=0.019 Sum_probs=79.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH
Q 013623 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (439)
Q Consensus 278 ~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL 357 (439)
.++..|.. .+..+-.-|.++.=.+-.|+. .|.+--|||||...++-+.+. ++..+.-+.+|-+-|+.|
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~l----------h~knPd~~I~~Tfftk~L 218 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAEL----------HSKNPDSRIAFTFFTKIL 218 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHH----------hcCCCCceEEEEeehHHH
Confidence 44555532 233344567776555556766 678889999997543333221 122455688999999999
Q ss_pred HHHHHHHHHhhhc----CCCC---ceEEEEECCCChHHHHHHhcCCCc---EE-----EEChHHHHHHHHhCCCCCCCcc
Q 013623 358 ASQVLSNCRSLSK----CGVP---FRSMVVTGGFRQKTQLENLQEGVD---VL-----IATPGRFMFLIKEGILQLINLR 422 (439)
Q Consensus 358 A~Qi~~~l~~L~k----~~~~---i~v~~l~Gg~~~~~q~~~L~~g~d---IL-----VaTPgrLldlL~~~~l~L~~Lr 422 (439)
++++...+.+++- ...+ +.++-..||............-|+ |- ++--+.-.+++. ..-+..-.+
T Consensus 219 ~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~-~~~~~~~yD 297 (660)
T COG3972 219 ASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIA-DINNKKAYD 297 (660)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHH-hhhcccccc
Confidence 9999888877752 1122 233344455432221111111111 11 111111122222 112255589
Q ss_pred cEEEeCCccchhhhc
Q 013623 423 WYARTASLNIESHFS 437 (439)
Q Consensus 423 ~LVlDEAD~fe~~~~ 437 (439)
++.|||+..|...|-
T Consensus 298 ~ilIDE~QDFP~~F~ 312 (660)
T COG3972 298 YILIDESQDFPQSFI 312 (660)
T ss_pred EEEecccccCCHHHH
Confidence 999999999887663
No 422
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=63.53 E-value=15 Score=40.54 Aligned_cols=40 Identities=20% Similarity=0.433 Sum_probs=28.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhc---CCcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLs---GrDvli~ApTGSGKTlay 322 (439)
++|+++--.+.+.+.|+.. +.. ++-+|+++|.|+|||.+.
T Consensus 13 ~~f~~viGq~~v~~~L~~~---------------i~~~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNA---------------IKQGKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred CcHHhccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHH
Confidence 5799987788888777542 111 234788999999999654
No 423
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=63.40 E-value=13 Score=37.15 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=43.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHH---hhhHhcCC-cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCC
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMA---FPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~a---IP~iLsGr-Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~ 344 (439)
-|+.++++..+...+ +..+.+.+... -+.+-.|+ =+.++++-|||||..-- .++..+... .
T Consensus 15 g~~~~pf~~~~~~~~----~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d----------~ 79 (269)
T COG3267 15 GFSRLPFSWDIQPGL----DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNED----------Q 79 (269)
T ss_pred hhccCCCccchhhhh----hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCCC----------c
Confidence 466666665555444 12222223222 12334455 68899999999997654 333333211 1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
-.-++|-.||-..+.-+...+..+.
T Consensus 80 ~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 80 VAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred eEEEEecCcchhHHHHHHHHHHHhc
Confidence 1113445566655555555555554
No 424
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=63.36 E-value=16 Score=41.96 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=22.4
Q ss_pred EChHHHHHHHHhCCCCCCCcccEEEeCCccchhhh
Q 013623 402 ATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 402 aTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
+.||++...+..... . -.+|+|||+|.+....
T Consensus 401 ~~~G~~~~~l~~~~~-~--~~villDEidk~~~~~ 432 (784)
T PRK10787 401 SMPGKLIQKMAKVGV-K--NPLFLLDEIDKMSSDM 432 (784)
T ss_pred CCCcHHHHHHHhcCC-C--CCEEEEEChhhccccc
Confidence 468999888875332 1 2469999999887543
No 425
>PRK08840 replicative DNA helicase; Provisional
Probab=63.35 E-value=23 Score=38.11 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=19.4
Q ss_pred HhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 302 VVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
+..|.=+++.|.||.|||. |.+-++.++
T Consensus 214 ~~~g~LiviaarPg~GKTa-falnia~~~ 241 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTT-FAMNLCENA 241 (464)
T ss_pred CCCCceEEEEeCCCCchHH-HHHHHHHHH
Confidence 3445667889999999995 445555444
No 426
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=63.35 E-value=6 Score=39.05 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=17.7
Q ss_pred cEEEEcCCCCCcceeehhHHHHHH
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l 330 (439)
.++++|++|||||. |++-++..+
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhh
Confidence 68999999999994 555565544
No 427
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.25 E-value=36 Score=38.16 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=28.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlay 322 (439)
++|.++--++.+...|...= +..- -.+.+|+.+|.|+|||...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l-------~~~r-----l~~a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNAL-------ISNR-----IAPAYLFTGPRGTGKTSSA 55 (620)
T ss_pred CcHhhccChHHHHHHHHHHH-------HcCC-----CCceEEEECCCCCChHHHH
Confidence 67888877777777764410 0000 1245799999999999653
No 428
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=62.71 E-value=21 Score=36.62 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=70.4
Q ss_pred CCCCCHHHHHHhhhHh----cCC---cEEEEcCCCCCcceeehhHHHHHHHHHHhhcc-------CCCCCCCCeEEEE--
Q 013623 288 FLRPSQIQAMAFPPVV----EGK---SCILADQSGSGKTLAYLLPVIQRLRQEELQGL-------SKSTSGSPRVVIL-- 351 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iL----sGr---Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~-------~~~~~~gp~aLIL-- 351 (439)
+..++|.|..+|..+. +|+ -+++.+|.|+||+... ..+...+........ ......-|-..+|
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 3567889999888766 343 4899999999997533 333444432210000 0112334556666
Q ss_pred cCcH--------HHHHHHHHHHHhhhcC--CCCceEEEEECCCChHHH-----HHHhc---CCCcEE-EEC-hHHHHHHH
Q 013623 352 APTA--------ELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQ-----LENLQ---EGVDVL-IAT-PGRFMFLI 411 (439)
Q Consensus 352 vPTr--------ELA~Qi~~~l~~L~k~--~~~i~v~~l~Gg~~~~~q-----~~~L~---~g~dIL-VaT-PgrLldlL 411 (439)
.|.. -.+.||.+..+.+... ..+.+++++.....+... +..++ .++.+| ++. |.+|+.-+
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 6642 2356666666555432 135688888766544432 22232 234444 444 68888777
Q ss_pred HhCC
Q 013623 412 KEGI 415 (439)
Q Consensus 412 ~~~~ 415 (439)
+.++
T Consensus 161 rSRC 164 (319)
T PRK08769 161 RSRC 164 (319)
T ss_pred Hhhh
Confidence 6543
No 429
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=62.68 E-value=13 Score=43.55 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 287 gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
++-..||-|.++|-.-+.-.++++.+|+|+|||-.. .-++..+... .+.++++|++.+..-.+|.+..+.
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~a-vqil~~lyhn---------~p~qrTlivthsnqaln~lfeKi~ 804 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVA-VQILSVLYHN---------SPNQRTLIVTHSNQALNQLFEKIM 804 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchh-hhhhhhhhhc---------CCCcceEEEEecccchhHHHHHHH
Confidence 345678889998877777789999999999999654 3344444332 467899999999888888777665
Q ss_pred hh
Q 013623 367 SL 368 (439)
Q Consensus 367 ~L 368 (439)
++
T Consensus 805 ~~ 806 (1320)
T KOG1806|consen 805 AL 806 (1320)
T ss_pred hc
Confidence 54
No 430
>PRK09354 recA recombinase A; Provisional
Probab=62.66 E-value=12 Score=38.92 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
|+=+.+.+|+|||||...+..+.+.. . .+-.|++|..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~-~-----------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ-K-----------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-----------cCCcEEEECCccchHH
Confidence 56788999999999975433333322 1 2457788876665543
No 431
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=62.60 E-value=6 Score=39.99 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.2
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..+.+++++++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44788999999999999963
No 432
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=62.35 E-value=73 Score=28.66 Aligned_cols=14 Identities=36% Similarity=0.518 Sum_probs=12.2
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
+++.+++|+|||..
T Consensus 3 ~~~~G~~G~GKTt~ 16 (173)
T cd03115 3 ILLVGLQGVGKTTT 16 (173)
T ss_pred EEEECCCCCCHHHH
Confidence 57889999999965
No 433
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=62.08 E-value=9.3 Score=39.35 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
|+=+.+.+|+|||||. +++.++..... .+-.+++|..-..+-.
T Consensus 55 G~iteI~Gp~GsGKTt-Lal~~~~~~~~-----------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTT-LALHAIAEAQK-----------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHH-HHHHHHHHHHH-----------cCCCEEEECccccHHH
Confidence 5678999999999995 44444443322 2456788876555543
No 434
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=61.95 E-value=15 Score=40.26 Aligned_cols=123 Identities=14% Similarity=0.051 Sum_probs=74.6
Q ss_pred CCCCHHHHHHhhhHhc------C----CcEEEEcCCCCCcceeeh-hHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH
Q 013623 289 LRPSQIQAMAFPPVVE------G----KSCILADQSGSGKTLAYL-LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLs------G----rDvli~ApTGSGKTlayl-LPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL 357 (439)
..+-|.|.-.+-.++- | +-.+|.-|-+-|||.... +.+...+... ..+-...|++|+.+-
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---------~~~~~~~i~A~s~~q 130 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---------RSGAGIYILAPSVEQ 130 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---------hcCCcEEEEeccHHH
Confidence 3567889888888772 1 357888899999985433 2222222222 346678999999999
Q ss_pred HHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHH---HHHH--hCCCCCCCcccEEEeCCccc
Q 013623 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM---FLIK--EGILQLINLRWYARTASLNI 432 (439)
Q Consensus 358 A~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLl---dlL~--~~~l~L~~Lr~LVlDEAD~f 432 (439)
+.+.+..++.......+++. ..+...|..+.+-+... ..+. .+..+=.+..+.|+||.|.|
T Consensus 131 a~~~F~~ar~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f 196 (546)
T COG4626 131 AANSFNPARDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLF 196 (546)
T ss_pred HHHhhHHHHHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhh
Confidence 99999999887663221111 11112233333333222 2222 13455556789999999998
Q ss_pred hh
Q 013623 433 ES 434 (439)
Q Consensus 433 e~ 434 (439)
.+
T Consensus 197 ~~ 198 (546)
T COG4626 197 GK 198 (546)
T ss_pred cC
Confidence 76
No 435
>PRK08116 hypothetical protein; Validated
Probab=61.93 E-value=17 Score=36.01 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=28.8
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..+++.+++|+|||... ..+.+.+... +.. ++..+..+|..++...
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~-----------~~~-v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK-----------GVP-VIFVNFPQLLNRIKST 160 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc-----------CCe-EEEEEHHHHHHHHHHH
Confidence 34999999999998533 2344444332 223 4555677777776543
No 436
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=60.92 E-value=7 Score=38.13 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=34.5
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|+.+++.+++|||||. |.+-++...... +-. ++.+-+.|...++.+.+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~-f~~qfl~~~~~~-----------ge~-vlyvs~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTI-FALQFLYEGARE-----------GEP-VLYVSTEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHH-HHHHHHHHHHhc-----------CCc-EEEEEecCCHHHHHHHHHHcC
Confidence 57899999999999995 333333332221 223 445557788888888887653
No 437
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=60.73 E-value=58 Score=33.81 Aligned_cols=15 Identities=20% Similarity=0.384 Sum_probs=12.9
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+++.+|.|+|||..
T Consensus 47 a~L~~G~~G~GKttl 61 (351)
T PRK09112 47 ALLFEGPEGIGKATL 61 (351)
T ss_pred eEeeECCCCCCHHHH
Confidence 489999999999854
No 438
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=60.57 E-value=13 Score=43.23 Aligned_cols=114 Identities=14% Similarity=0.200 Sum_probs=71.0
Q ss_pred hhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh-----hhcC-CC
Q 013623 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-----LSKC-GV 373 (439)
Q Consensus 300 P~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~-----L~k~-~~ 373 (439)
.++....-++|...||.|||.-|.--+|+.+.+.. .....-+.+--|+|--+.-+.+.+.. ++.. +.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-------~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-------NGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-------ccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 33445566788899999999998888888876642 23344566667887777766654422 2210 01
Q ss_pred CceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 374 ~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.++...++ + ... --|+.+|-|-++.++..+.. .+.++++||.|.++.
T Consensus 461 ~vRf~Sa~---p-------rpy-g~i~fctvgvllr~~e~glr---g~sh~i~deiherdv 507 (1282)
T KOG0921|consen 461 NVRFDSAT---P-------RPY-GSIMFCTVGVLLRMMENGLR---GISHVIIDEIHERDV 507 (1282)
T ss_pred cccccccc---c-------ccc-cceeeeccchhhhhhhhccc---ccccccchhhhhhcc
Confidence 11110000 0 011 24889999998888876544 367899999998764
No 439
>PF05505 Ebola_NP: Ebola nucleoprotein; InterPro: IPR008609 This family consists of Ebola virus sp., Lake Victoria marburgvirus nucleoproteins. These proteins are responsible for encapsidation of genomic RNA. It has been found that nucleoprotein DNA vaccines can offer protection from the virus [].; GO: 0019074 viral RNA genome packaging, 0019013 viral nucleocapsid
Probab=60.39 E-value=2.6e+02 Score=30.92 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.5
Q ss_pred ccCCCCCCCCCCccccCCCCceEeecCC
Q 013623 61 ASGGDGGGGGYSRTPLETAGACELIDND 88 (439)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (439)
-+|+-++-.+|+...|++||-..|.|-+
T Consensus 444 ~d~~~~~y~~ys~~~~~~~ddl~Lfdld 471 (717)
T PF05505_consen 444 DDGESGNYQSYSSSGENAPDDLVLFDLD 471 (717)
T ss_pred ccccccccCcccccccCCCCCeeeeccc
Confidence 3556666778999999999999999853
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=60.32 E-value=10 Score=36.76 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=31.9
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
-.|.-+++.+++|+|||...+ -++..+.. .+.++++++ +-+-..++.+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~-~~~~~~~~-----------~g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQ-RLAYGFLQ-----------NGYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHH-HHHHHHHh-----------CCCcEEEEe-CCCCHHHHHHHHHHh
Confidence 457889999999999996422 22222221 234667777 444445555555444
No 441
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=59.96 E-value=9.2 Score=36.27 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
++++.|.|.||||||.. +--+++.+.
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~ 48 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELL 48 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 58999999999999853 344555554
No 442
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=59.75 E-value=8.1 Score=43.84 Aligned_cols=70 Identities=23% Similarity=0.209 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHhhh--HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc
Q 013623 277 DYMIESLKRQNFLRPSQIQAMAFPP--VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (439)
Q Consensus 277 ~~Ll~aL~~~gf~~pTpIQ~~aIP~--iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT 354 (439)
.++.+.|++-+-. +++...-+|. -...+++++++-||||||.+. --+|..++. ++-++||.=|+
T Consensus 157 ~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~-----------RGdrAIIyD~~ 222 (732)
T PRK13700 157 KDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQ-----------RGDMVVIYDRS 222 (732)
T ss_pred HHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHH-----------cCCeEEEEeCC
Confidence 4556666665533 3444445555 446789999999999999843 344444433 23355555555
Q ss_pred HHHHHH
Q 013623 355 AELASQ 360 (439)
Q Consensus 355 rELA~Q 360 (439)
-+.+..
T Consensus 223 GeFv~~ 228 (732)
T PRK13700 223 GEFVKS 228 (732)
T ss_pred CchHHH
Confidence 555443
No 443
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=59.53 E-value=5.1 Score=42.24 Aligned_cols=53 Identities=15% Similarity=0.349 Sum_probs=34.7
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~---gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+..+|.++|-.+...+.|++. -+..|.-.+...+ -..+.+++.+|+|+|||+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 346899998777777666542 2333333333222 2357899999999999974
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=59.46 E-value=4.7 Score=37.95 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=16.1
Q ss_pred EEEEcCCCCCcceeehhHHHHHH
Q 013623 308 CILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l 330 (439)
+++++|||||||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999653 3445544
No 445
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=59.35 E-value=5.8 Score=38.31 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=13.1
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.++++++.++.|+|||..
T Consensus 21 G~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp CC--EEEES-CCCTHHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 578999999999999853
No 446
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=59.26 E-value=20 Score=37.73 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|.=+++.|++|+|||. |++-++.++
T Consensus 194 ~G~l~vi~g~pg~GKT~-~~l~~a~~~ 219 (434)
T TIGR00665 194 PSDLIILAARPSMGKTA-FALNIAENA 219 (434)
T ss_pred CCeEEEEEeCCCCChHH-HHHHHHHHH
Confidence 45668999999999994 555555544
No 447
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=59.07 E-value=72 Score=37.70 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=55.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c---CCCcEEEEChHHHHHHHHhCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q---EGVDVLIATPGRFMFLIKEGILQL 418 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~---~g~dILVaTPgrLldlL~~~~l~L 418 (439)
..++||+|.+++-+..+.+.++.. .++++.++.|+.+..+....+ . .++.|||+|- . -...+++
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~----~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd-----v-gseGlNl 562 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRER----EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE-----I-GSEGRNF 562 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhc----cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech-----h-hccCCCc
Confidence 568999999999999999888543 468899999999876654433 2 2589999992 2 2346778
Q ss_pred CCcccEEEeCC
Q 013623 419 INLRWYARTAS 429 (439)
Q Consensus 419 ~~Lr~LVlDEA 429 (439)
..+++||.=+.
T Consensus 563 q~a~~VInfDl 573 (956)
T PRK04914 563 QFASHLVLFDL 573 (956)
T ss_pred ccccEEEEecC
Confidence 88877775443
No 448
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=58.77 E-value=10 Score=38.94 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
..+..++.|.| ++..++||||||...
T Consensus 78 plv~~~~~G~n~~i~ayGqtGSGKTyTm 105 (338)
T cd01370 78 PLVDGVLNGYNATVFAYGATGAGKTHTM 105 (338)
T ss_pred HHHHHHHCCCCceEEeeCCCCCCCeEEE
Confidence 35556678876 677889999999886
No 449
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=58.70 E-value=8.6 Score=39.56 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.8
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++..++||||||...
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm 106 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTM 106 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEe
Confidence 4556778876 677789999999886
No 450
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=58.62 E-value=9.3 Score=38.77 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=20.6
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
..++.++.|.| ++..++||||||...
T Consensus 71 plv~~~~~G~n~~i~ayG~tgSGKTyTm 98 (319)
T cd01376 71 PIVPHLLSGQNATVFAYGSTGAGKTHTM 98 (319)
T ss_pred HHHHHHhCCCceEEEEECCCCCCCcEEE
Confidence 45666778887 677789999999876
No 451
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=58.53 E-value=8.9 Score=38.90 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=20.5
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
..++.++.|.| ++..++||||||...
T Consensus 67 ~~v~~~~~G~n~~i~ayG~tgSGKT~Tm 94 (325)
T cd01369 67 PIVDDVLNGYNGTIFAYGQTGSGKTYTM 94 (325)
T ss_pred HHHHHHHcCccceEEEeCCCCCCceEEe
Confidence 45566778876 688889999999884
No 452
>PRK13767 ATP-dependent helicase; Provisional
Probab=58.32 E-value=45 Score=38.80 Aligned_cols=78 Identities=15% Similarity=0.094 Sum_probs=53.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcC-CCCceEEEEECCCChHHHHH---Hhc-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQKTQLE---NLQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~-~~~i~v~~l~Gg~~~~~q~~---~L~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
.++||.|+|+..|..++..+...... ..+..+.++.|+.+...+.. .++ ....|||||.- +. ..+++..
T Consensus 285 ~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le-~GIDip~ 358 (876)
T PRK13767 285 RTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LE-LGIDIGY 358 (876)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HH-hcCCCCC
Confidence 46899999999999999888875431 12356888889887765433 233 34789999953 32 3567777
Q ss_pred cccEEEeCC
Q 013623 421 LRWYARTAS 429 (439)
Q Consensus 421 Lr~LVlDEA 429 (439)
+++||.-..
T Consensus 359 Vd~VI~~~~ 367 (876)
T PRK13767 359 IDLVVLLGS 367 (876)
T ss_pred CcEEEEeCC
Confidence 777775443
No 453
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.31 E-value=7.2 Score=41.89 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=19.5
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
|.-.|||+.+|||||||+ |.-.|.++.
T Consensus 224 LeKSNvLllGPtGsGKTl--laqTLAr~l 250 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTL--LAQTLARVL 250 (564)
T ss_pred eecccEEEECCCCCchhH--HHHHHHHHh
Confidence 445689999999999996 334455553
No 454
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.22 E-value=34 Score=34.28 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCCcceeehh
Q 013623 304 EGKSCILADQSGSGKTLAYLL 324 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylL 324 (439)
.+..+++.+++|+|||..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 346789999999999976543
No 455
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=58.01 E-value=5 Score=42.95 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=30.9
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~---gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+..+|.+++=-+..++.|.+. .+..|.-..... +...+.+++.+|+|+|||+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g---i~~p~gVLL~GPPGTGKT~L 233 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG---IKPPKGVILYGPPGTGKTLL 233 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCcEEEEECCCCCCHHHH
Confidence 446888886555555555442 122211111111 22457899999999999964
No 456
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.96 E-value=30 Score=39.50 Aligned_cols=27 Identities=0% Similarity=-0.236 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCCC--CCcccEEEeCCccc
Q 013623 406 RFMFLIKEGILQL--INLRWYARTASLNI 432 (439)
Q Consensus 406 rLldlL~~~~l~L--~~Lr~LVlDEAD~f 432 (439)
++..++.++.+.= .+-.|||+||+|.=
T Consensus 371 kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 371 KIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred HHHHHHhhccccccCCCcceEEEecccCC
Confidence 4555666554432 55778999999853
No 457
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.87 E-value=53 Score=35.75 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhcCCCCceEEEEECCCCh-----HHHHHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQ-----KTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 358 A~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~-----~~q~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
.+++.+.++++. .+.++..+.++... ...+..+.+ .++|||||.. + .+.+++.+|.++|+=.+|.
T Consensus 271 te~~~e~l~~~f---p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----i-~kG~d~~~v~lV~vl~aD~ 341 (505)
T TIGR00595 271 TEQVEEELAKLF---PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM-----I-AKGHHFPNVTLVGVLDADS 341 (505)
T ss_pred HHHHHHHHHhhC---CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc-----c-ccCCCCCcccEEEEEcCcc
Confidence 355666666664 35778888777533 234455554 5899999974 2 4567899999999888885
No 458
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=57.86 E-value=13 Score=44.43 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=40.7
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
.+.+++|.|--|||||.+-..=++..+.... ...-.+.|||+-|+.-+......+.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~-------~~~v~~ILvvTFT~aAa~Emk~RI~ 70 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG-------PLDVDEILVVTFTKAAAAEMKERIR 70 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC-------CCChhHeeeeeccHHHHHHHHHHHH
Confidence 5779999999999999887666777776531 0123468999999877776655443
No 459
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=57.70 E-value=36 Score=32.84 Aligned_cols=13 Identities=38% Similarity=0.435 Sum_probs=11.0
Q ss_pred EEEEcCCCCCcce
Q 013623 308 CILADQSGSGKTL 320 (439)
Q Consensus 308 vli~ApTGSGKTl 320 (439)
+-+.+|.|||||.
T Consensus 16 i~v~Gp~GSGKTa 28 (202)
T COG0378 16 IGVGGPPGSGKTA 28 (202)
T ss_pred EEecCCCCcCHHH
Confidence 5678899999994
No 460
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=56.90 E-value=95 Score=34.06 Aligned_cols=77 Identities=22% Similarity=0.339 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEEC--------CCChHHHHHHh---cC-CCcEEEEChHHHHHH
Q 013623 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLENL---QE-GVDVLIATPGRFMFL 410 (439)
Q Consensus 343 ~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~G--------g~~~~~q~~~L---~~-g~dILVaTPgrLldl 410 (439)
..+-++||.+..|+-|..+.+.+.+.+- ..+ +.++| |.+..+|.+.+ ++ .+++||+|.
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~---~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS------ 433 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGI---KAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATS------ 433 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCC---cce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcc------
Confidence 3457999999999999999999987753 344 45555 34556665554 33 599999994
Q ss_pred HHhCCCCCCCcccEEEeCC
Q 013623 411 IKEGILQLINLRWYARTAS 429 (439)
Q Consensus 411 L~~~~l~L~~Lr~LVlDEA 429 (439)
+-+..++...++++|+=|+
T Consensus 434 VgEEGLDIp~vDlVifYEp 452 (542)
T COG1111 434 VGEEGLDIPEVDLVIFYEP 452 (542)
T ss_pred cccccCCCCcccEEEEecC
Confidence 3456788999999998776
No 461
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=56.89 E-value=5.9 Score=43.27 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=29.7
Q ss_pred cccccccC-CCHHHHHHHHH---CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELG-CSDYMIESLKR---QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elg-L~~~Ll~aL~~---~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
..+|++++ +.+.+ +.|++ ..+.+|-.++...++ ..+.+++.+|+|+|||+.
T Consensus 178 ~v~~~dIgGl~~~i-~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 178 DVTYADIGGLDSQI-EQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCHHHcCChHHHH-HHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH
Confidence 35799987 54433 33322 233333333333322 246799999999999973
No 462
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=56.81 E-value=1.4e+02 Score=32.57 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=90.6
Q ss_pred cccccCCCHHHHHHHHHCCC-------------CCCCHHHHHHhhhHhcCCcEEEEcCCCCCc-----ceeehh-----H
Q 013623 269 SFKELGCSDYMIESLKRQNF-------------LRPSQIQAMAFPPVVEGKSCILADQSGSGK-----TLAYLL-----P 325 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf-------------~~pTpIQ~~aIP~iLsGrDvli~ApTGSGK-----TlaylL-----P 325 (439)
..+++++-|.|.+.+...+- +.|..+|..+...+..+...+-++.-|+.- ++.|+. .
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~ 317 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRS 317 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHH
Confidence 34448888888887765543 467789995555555556666666555432 233322 1
Q ss_pred HHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc----CCCcEEE
Q 013623 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLI 401 (439)
Q Consensus 326 iL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~----~g~dILV 401 (439)
-|-.++..............=..+|.|-|.+-|.|+...+... ++....+.|.....++.+.+. ..++|+|
T Consensus 318 ~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~-----~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 318 KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN-----GYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred HHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC-----CCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 1111111110000011111126899999999999888877643 566777787777666655552 3489999
Q ss_pred EChHHHHHHHHhCCCCCCCcccEEEeCC
Q 013623 402 ATPGRFMFLIKEGILQLINLRWYARTAS 429 (439)
Q Consensus 402 aTPgrLldlL~~~~l~L~~Lr~LVlDEA 429 (439)
+| .+....++..+|+++|.=+.
T Consensus 393 aT------~VaaRGlDi~~V~hVInyDm 414 (482)
T KOG0335|consen 393 AT------NVAARGLDIPNVKHVINYDM 414 (482)
T ss_pred Ee------hhhhcCCCCCCCceeEEeec
Confidence 99 23456788999999987655
No 463
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=56.80 E-value=55 Score=36.77 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=68.1
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEEC
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~G 382 (439)
++.|-.+..-|---|||+ |++|++..++.. -.+.++.|++.-|--++-++.++..-+..-.+-+.....
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s---------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~- 268 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN---------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN- 268 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh---------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-
Confidence 445667778899999995 899999988774 357899999999988888777765444311111111111
Q ss_pred CCChHHHHHHhcCCCcEEEEChHHHHHH-----HHhCCCCCCCcccEEEeCCccchh
Q 013623 383 GFRQKTQLENLQEGVDVLIATPGRFMFL-----IKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 383 g~~~~~q~~~L~~g~dILVaTPgrLldl-----L~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++-.|.+.-||.=-.. .+.+.+.=.+..+|++|||+-+..
T Consensus 269 ------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 269 ------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH
Confidence 1224666666542111 112233335578999999986654
No 464
>PF13479 AAA_24: AAA domain
Probab=56.62 E-value=8.5 Score=36.64 Aligned_cols=38 Identities=11% Similarity=-0.086 Sum_probs=25.3
Q ss_pred CcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 397 VDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 397 ~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
..|-|.++..|.+.+..-.-.....+.||||-++.++.
T Consensus 45 ~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~ 82 (213)
T PF13479_consen 45 DVIPITSWEDFLEALDELEEDEADYDTIVIDSISWLED 82 (213)
T ss_pred CeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHHHH
Confidence 34555588888776643222256789999999877654
No 465
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=56.44 E-value=4.4 Score=38.24 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCCcceeehh
Q 013623 305 GKSCILADQSGSGKTLAYLL 324 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylL 324 (439)
...+++++|.|||||..|..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQ 22 (181)
T ss_dssp --EEEEE-STTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46799999999999976643
No 466
>PRK06321 replicative DNA helicase; Provisional
Probab=56.20 E-value=28 Score=37.64 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
|.=+++.|.+|.|||. |.+-+..++
T Consensus 226 G~LiiiaarPgmGKTa-fal~ia~~~ 250 (472)
T PRK06321 226 SNLMILAARPAMGKTA-LALNIAENF 250 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHH
Confidence 3446788999999995 455565554
No 467
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=55.82 E-value=20 Score=33.86 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCcceeeh
Q 013623 304 EGKSCILADQSGSGKTLAYL 323 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlayl 323 (439)
.|.=+.+.+++|+|||...+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999996443
No 468
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=55.77 E-value=9.4 Score=39.11 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=19.4
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++..++||||||...
T Consensus 66 ~v~~~~~G~n~ti~aYGqTGSGKTyTm 92 (337)
T cd01373 66 LVEDCLSGYNGSIFAYGQTGSGKTYTM 92 (337)
T ss_pred HHHHHhCCCceeEEEeCCCCCCceEEe
Confidence 4556678887 677789999999765
No 469
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=55.65 E-value=17 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.=++|.+++|+|||..
T Consensus 35 ~gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM 52 (259)
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467799999999999963
No 470
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=55.42 E-value=11 Score=38.34 Aligned_cols=27 Identities=44% Similarity=0.672 Sum_probs=20.4
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceeeh
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAYL 323 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlayl 323 (439)
..+..++.|.| ++..++||||||....
T Consensus 75 plv~~~~~G~n~~i~ayGqtGSGKTyTm~ 103 (322)
T cd01367 75 PLIPHVFEGGVATCFAYGQTGSGKTYTML 103 (322)
T ss_pred HHHHHHhCCCceEEEeccCCCCCCceEec
Confidence 35556778876 6667799999998764
No 471
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.41 E-value=5.6 Score=44.81 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=21.7
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQ 332 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~ 332 (439)
.|+.+.+.+|.|+||+.+ ..+|.+++.
T Consensus 493 pGe~vALVGPSGsGKSTi--asLL~rfY~ 519 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTI--ASLLLRFYD 519 (716)
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhcC
Confidence 578899999999999864 466777754
No 472
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=55.27 E-value=9.4 Score=39.35 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=19.4
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+..++||||||...
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm 106 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTM 106 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEe
Confidence 3555678876 677789999999875
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=55.09 E-value=10 Score=40.82 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=35.5
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|+-+++.+++|+|||.-.+--+.+.+.+ .+-.+|+++- -|-..++.+.+..+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----------~ge~~lyvs~-eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----------FDEPGVFVTF-EESPQDIIKNARSFG 73 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEEEE-ecCHHHHHHHHHHcC
Confidence 46889999999999996544334444432 1235677763 466677777777664
No 474
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=55.01 E-value=14 Score=36.82 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=18.7
Q ss_pred EEEEcCCCCCcceeehhHHHHHHHH
Q 013623 308 CILADQSGSGKTLAYLLPVIQRLRQ 332 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l~~ 332 (439)
.+|++|+||||| .|..-+.+.+..
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHH
Confidence 478999999998 577777666644
No 475
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=54.98 E-value=7.8 Score=36.18 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
..+++|.+.||||||.+...-+++.+
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHH
Confidence 45899999999999976544333333
No 476
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=54.94 E-value=39 Score=40.53 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=51.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCCCc
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLINL 421 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~~L 421 (439)
..+||.|.||.-+.++...+.. .++.+..+.|+.........+ ...++|||||- .+ ...+++.+|
T Consensus 681 esgIIYC~SRke~E~LAe~L~~-----~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATd-----AF-GMGIDkPDV 749 (1195)
T PLN03137 681 ECGIIYCLSRMDCEKVAERLQE-----FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATV-----AF-GMGINKPDV 749 (1195)
T ss_pred CCceeEeCchhHHHHHHHHHHH-----CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEec-----hh-hcCCCccCC
Confidence 4578999999998888877764 357888899998776543332 24589999993 23 356888999
Q ss_pred ccEEE
Q 013623 422 RWYAR 426 (439)
Q Consensus 422 r~LVl 426 (439)
++||-
T Consensus 750 R~VIH 754 (1195)
T PLN03137 750 RFVIH 754 (1195)
T ss_pred cEEEE
Confidence 99884
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=54.66 E-value=7.6 Score=30.39 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=16.5
Q ss_pred hhhHhcCCcEEEEcCCCCCcce
Q 013623 299 FPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 299 IP~iLsGrDvli~ApTGSGKTl 320 (439)
|+.-..|..+++.+++|||||.
T Consensus 17 ~~~~~~g~~tli~G~nGsGKST 38 (62)
T PF13555_consen 17 IDFDPRGDVTLITGPNGSGKST 38 (62)
T ss_pred EeecCCCcEEEEECCCCCCHHH
Confidence 3333345679999999999985
No 478
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.56 E-value=6.6 Score=33.01 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=11.7
Q ss_pred EEEEcCCCCCcce
Q 013623 308 CILADQSGSGKTL 320 (439)
Q Consensus 308 vli~ApTGSGKTl 320 (439)
+++.+|+|+|||.
T Consensus 1 ill~G~~G~GKT~ 13 (132)
T PF00004_consen 1 ILLHGPPGTGKTT 13 (132)
T ss_dssp EEEESSTTSSHHH
T ss_pred CEEECcCCCCeeH
Confidence 6899999999995
No 479
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=54.29 E-value=83 Score=32.27 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=62.8
Q ss_pred CHHHHHHhhhHhc--CC---cEEEEcCCCCCcceeehhHHHHHHHHHHhhc-----------cCCCCCCCCeEEEEcCcH
Q 013623 292 SQIQAMAFPPVVE--GK---SCILADQSGSGKTLAYLLPVIQRLRQEELQG-----------LSKSTSGSPRVVILAPTA 355 (439)
Q Consensus 292 TpIQ~~aIP~iLs--Gr---Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~-----------~~~~~~~gp~aLILvPTr 355 (439)
+|.|...|..+.. ++ -+++.+|.|.|||..... +...+....... ........|-.+++.|+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~ 81 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLS 81 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccc
Confidence 5777888877763 33 488999999999854322 222332110000 001112347778888842
Q ss_pred -----------HHHHHHHHHHHhhhcC--CCCceEEEEECCCCh--HHH---HHHh---cCCCcEEEEC--hHHHHHHHH
Q 013623 356 -----------ELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQ--KTQ---LENL---QEGVDVLIAT--PGRFMFLIK 412 (439)
Q Consensus 356 -----------ELA~Qi~~~l~~L~k~--~~~i~v~~l~Gg~~~--~~q---~~~L---~~g~dILVaT--PgrLldlL~ 412 (439)
--+.||.+....+... ..+.++.++---... ..+ ...+ ..++.+|++| |+.+...++
T Consensus 82 ~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 82 DEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred ccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH
Confidence 2466666655555431 234566665432222 221 2222 2345566666 456666655
Q ss_pred hC
Q 013623 413 EG 414 (439)
Q Consensus 413 ~~ 414 (439)
..
T Consensus 162 SR 163 (325)
T PRK08699 162 SR 163 (325)
T ss_pred HH
Confidence 43
No 480
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=54.27 E-value=9.9 Score=40.43 Aligned_cols=18 Identities=39% Similarity=0.518 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCCcceee
Q 013623 305 GKSCILADQSGSGKTLAY 322 (439)
Q Consensus 305 GrDvli~ApTGSGKTlay 322 (439)
..++++.+|||+|||...
T Consensus 116 ~~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLA 133 (413)
T ss_pred CceEEEECCCCcCHHHHH
Confidence 458999999999999643
No 481
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=54.18 E-value=1.4 Score=43.10 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=13.6
Q ss_pred EEcCCCCCcceeehhHHHHHH
Q 013623 310 LADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 310 i~ApTGSGKTlaylLPiL~~l 330 (439)
|.+|.||||| .|+-.+-+++
T Consensus 1 ViGpaGSGKT-T~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKT-TFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHH-HHHHHHHHHH
T ss_pred CCCCCCCCHH-HHHHHHHHHH
Confidence 5789999998 3555555554
No 482
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=53.90 E-value=19 Score=40.98 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=33.2
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
.-++|.+--|+|||.+ |+.+.+. ..++|..||+--|+.+...+.
T Consensus 72 s~~~itG~AGsGKst~-----i~~l~~~------------l~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTS-----IQTLNEN------------LDCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHH-----HHHHHHh------------cCEEEEcchHHHHHhhhcccc
Confidence 3478999999999853 4555443 257999999999999887554
No 483
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=53.73 E-value=8.5 Score=41.60 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|+|+++.+|+|||||+.
T Consensus 197 GgHnLl~~GpPGtGKTml 214 (490)
T COG0606 197 GGHNLLLVGPPGTGKTML 214 (490)
T ss_pred cCCcEEEecCCCCchHHh
Confidence 679999999999999975
No 484
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=53.22 E-value=43 Score=34.18 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=30.3
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH-HHHHHHHHHhh
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL-ASQVLSNCRSL 368 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL-A~Qi~~~l~~L 368 (439)
.=+.+.+++|+|||..-+--++....... ....+-+++||.--..+ ..++.+.++.+
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~------~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPRE------MGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchh------hcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 45789999999999644332322211110 01224478888743322 45555555544
No 485
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=53.15 E-value=6 Score=39.60 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCCcceee
Q 013623 304 EGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlay 322 (439)
.+.++++.+|+|||||.+.
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3568999999999999643
No 486
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=52.82 E-value=6.8 Score=32.94 Aligned_cols=13 Identities=38% Similarity=0.665 Sum_probs=11.6
Q ss_pred EEEEcCCCCCcce
Q 013623 308 CILADQSGSGKTL 320 (439)
Q Consensus 308 vli~ApTGSGKTl 320 (439)
++|.+++|||||.
T Consensus 2 I~I~G~~gsGKST 14 (121)
T PF13207_consen 2 IIISGPPGSGKST 14 (121)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6889999999985
No 487
>PHA02653 RNA helicase NPH-II; Provisional
Probab=52.81 E-value=40 Score=38.19 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=52.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH-HHHh-c-CCCcEEEEChHHHHHHHHhCCCCCCCc
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ-LENL-Q-EGVDVLIATPGRFMFLIKEGILQLINL 421 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q-~~~L-~-~g~dILVaTPgrLldlL~~~~l~L~~L 421 (439)
+..+||.+|+++-+..+.+.+++.. .++.+..++|+.+..++ +..+ + ....|||+|. +. +..+++..|
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd-----IA-ERGIDIp~V 465 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP-----YL-ESSVTIRNA 465 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC-----hh-hccccccCe
Confidence 3479999999998888877776543 25788999999877544 3454 3 3478999993 33 456788888
Q ss_pred ccEE
Q 013623 422 RWYA 425 (439)
Q Consensus 422 r~LV 425 (439)
++||
T Consensus 466 ~~VI 469 (675)
T PHA02653 466 THVY 469 (675)
T ss_pred eEEE
Confidence 8665
No 488
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=52.67 E-value=6.8 Score=33.84 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.7
Q ss_pred EEEEcCCCCCcce
Q 013623 308 CILADQSGSGKTL 320 (439)
Q Consensus 308 vli~ApTGSGKTl 320 (439)
+++++++|||||.
T Consensus 2 ii~~G~pgsGKSt 14 (143)
T PF13671_consen 2 IILCGPPGSGKST 14 (143)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6899999999985
No 489
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=52.46 E-value=43 Score=30.74 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+.+|+.+|.|+|||..
T Consensus 15 ~~~L~~G~~G~gkt~~ 30 (188)
T TIGR00678 15 HAYLFAGPEGVGKELL 30 (188)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3589999999999853
No 490
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=52.29 E-value=41 Score=35.78 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=51.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc----CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~----~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+-.+||.|.|-.-++.+.-.++.+ ++...-+.|..+.......++ ..++||||| |+ -.+.++...
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~l-----g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T-----DV-aSRGLDip~ 368 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNL-----GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT-----DV-ASRGLDIPH 368 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhc-----CcceecccchhhHHHHHHHHHHHhccCCcEEEec-----ch-hcccCCCCC
Confidence 346799999988888887777754 577888899888877766553 459999999 32 345567777
Q ss_pred cccEE
Q 013623 421 LRWYA 425 (439)
Q Consensus 421 Lr~LV 425 (439)
++++|
T Consensus 369 Vd~VV 373 (476)
T KOG0330|consen 369 VDVVV 373 (476)
T ss_pred ceEEE
Confidence 77666
No 491
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=52.20 E-value=50 Score=39.01 Aligned_cols=55 Identities=20% Similarity=0.337 Sum_probs=30.7
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhc
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k 370 (439)
-+|+.==-|-||||-. +.+++.++... ....-+||||||..-+.+ -+..|.+.+.
T Consensus 698 GcILAHcMGLGKTlQV-vtflhTvL~c~-------klg~ktaLvV~PlNt~~N-W~~EFekWm~ 752 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQV-VTFLHTVLLCD-------KLGFKTALVVCPLNTALN-WMNEFEKWME 752 (1567)
T ss_pred chHHHHhhcccceehh-hHHHHHHHHhh-------ccCCceEEEEcchHHHHH-HHHHHHHhcc
Confidence 3444445688999753 44555443321 134568999999765533 3334444443
No 492
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=52.15 E-value=7.6 Score=40.00 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=31.3
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~---gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+..+|++++-.+..++.|.+. .+.+|.... .+. +...+.+++.+|+|+|||+.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~--~~g-~~~p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFE--EVG-IEPPKGVLLYGPPGTGKTLL 172 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHH--hcC-CCCCceEEEECCCCCCHHHH
Confidence 345788887777666666542 122221111 111 12346799999999999953
No 493
>PRK13531 regulatory ATPase RavA; Provisional
Probab=52.08 E-value=12 Score=40.62 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.4
Q ss_pred hHhcCCcEEEEcCCCCCccee
Q 013623 301 PVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTla 321 (439)
+++.|.++++.+|+|+|||..
T Consensus 35 aalag~hVLL~GpPGTGKT~L 55 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLI 55 (498)
T ss_pred HHccCCCEEEECCCChhHHHH
Confidence 456899999999999999964
No 494
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=52.01 E-value=13 Score=38.00 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++..++||||||...
T Consensus 65 lv~~~~~G~n~~i~ayG~tgSGKT~Tm 91 (341)
T cd01372 65 LVDGLFEGYNATVLAYGQTGSGKTYTM 91 (341)
T ss_pred HHHHHhCCCccceeeecCCCCCCcEEe
Confidence 3455678876 678889999999886
No 495
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=51.96 E-value=19 Score=32.81 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=35.5
Q ss_pred HhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHH-HhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhc
Q 013623 298 AFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQE-ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (439)
Q Consensus 298 aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~-~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k 370 (439)
.++-++ .|.=+++.|++|+|||.. ++-++..+... .+- ........++|++..--. ..++...+..+..
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~-~~~l~~~~~~g~~~~--g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTL-ALQLAAALATGRPFL--GELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHH-HHHHHHHHHT---TT-----------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHHHH-HHHHHHHHHhCCccC--CcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 333344 567799999999999964 44444444321 110 001123456666655443 5567777776654
No 496
>PHA00012 I assembly protein
Probab=51.82 E-value=27 Score=36.38 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=16.5
Q ss_pred EEEEcCCCCCcceeehhHHHHHH
Q 013623 308 CILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 308 vli~ApTGSGKTlaylLPiL~~l 330 (439)
-++.+..|||||+..+.-++..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999986655444443
No 497
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=51.41 E-value=12 Score=38.37 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.4
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
++..++.|.| ++..++||||||...
T Consensus 72 ~v~~~~~G~n~~i~ayG~tgSGKTyTm 98 (334)
T cd01375 72 VVDSALDGYNGTIFAYGQTGAGKTFTM 98 (334)
T ss_pred HHHHHhCCCccceeeecCCCCCCeEEc
Confidence 4556778876 777889999999764
No 498
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=51.38 E-value=15 Score=39.65 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=36.1
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|.-+++.+++|+|||... +-++..... .+-+++|++ .-|-..|+...++.+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~-~~f~~~~~~-----------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLV-SKFLENACA-----------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHH-----------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 4577999999999999733 222322221 244667766 7788888888888774
No 499
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=51.28 E-value=7.4 Score=32.57 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=12.2
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
|++.+.+|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 68999999999864
No 500
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=51.26 E-value=53 Score=37.22 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=19.9
Q ss_pred hhhHhcCCcEEEEc--CCCCCcceeehhH
Q 013623 299 FPPVVEGKSCILAD--QSGSGKTLAYLLP 325 (439)
Q Consensus 299 IP~iLsGrDvli~A--pTGSGKTlaylLP 325 (439)
|..++.|.+|+|.| +||||||..-.-|
T Consensus 385 v~S~lDGYnVCIFAYGQTGSGKTyTM~G~ 413 (670)
T KOG0239|consen 385 VQSALDGYNVCIFAYGQTGSGKTYTMSGP 413 (670)
T ss_pred HHHHhcCcceeEEEecccCCCccccccCC
Confidence 34456888876655 9999999876554
Done!