Query 013623
Match_columns 439
No_of_seqs 229 out of 1849
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 14:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmo_B ATP-dependent RNA helic 100.0 2.9E-32 9.8E-37 269.5 13.4 159 264-434 88-249 (300)
2 3fe2_A Probable ATP-dependent 100.0 9.9E-32 3.4E-36 255.4 15.3 163 267-434 28-190 (242)
3 2db3_A ATP-dependent RNA helic 100.0 2.4E-31 8.3E-36 274.2 16.4 162 267-433 55-216 (434)
4 1vec_A ATP-dependent RNA helic 100.0 1.2E-30 4E-35 240.1 16.3 158 268-434 3-160 (206)
5 3iuy_A Probable ATP-dependent 100.0 7.1E-31 2.4E-35 246.3 13.5 162 267-433 18-180 (228)
6 1wrb_A DJVLGB; RNA helicase, D 100.0 5.4E-31 1.8E-35 251.2 11.8 166 267-433 22-187 (253)
7 2oxc_A Probable ATP-dependent 100.0 4.3E-30 1.5E-34 242.3 15.4 157 267-433 23-179 (230)
8 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-30 4.8E-35 243.2 11.4 159 267-434 3-164 (219)
9 3ber_A Probable ATP-dependent 100.0 1E-29 3.4E-34 244.0 16.4 159 266-434 41-200 (249)
10 3bor_A Human initiation factor 100.0 6.1E-30 2.1E-34 242.6 12.7 157 267-433 29-186 (237)
11 3ly5_A ATP-dependent RNA helic 100.0 1.5E-29 5.2E-34 244.5 15.1 162 267-434 51-215 (262)
12 2i4i_A ATP-dependent RNA helic 100.0 3.7E-29 1.3E-33 252.0 18.2 166 267-433 14-188 (417)
13 2gxq_A Heat resistant RNA depe 100.0 2.3E-29 8E-34 231.2 14.9 156 269-433 2-157 (207)
14 2pl3_A Probable ATP-dependent 100.0 4.1E-29 1.4E-33 235.5 16.6 160 267-433 24-184 (236)
15 1t6n_A Probable ATP-dependent 100.0 3.1E-29 1.1E-33 233.5 15.0 158 268-434 14-172 (220)
16 1qde_A EIF4A, translation init 100.0 3.3E-29 1.1E-33 233.7 14.1 156 267-433 13-168 (224)
17 3dkp_A Probable ATP-dependent 100.0 1.9E-29 6.5E-34 239.0 10.8 158 268-434 25-189 (245)
18 2j0s_A ATP-dependent RNA helic 100.0 7.4E-28 2.5E-32 242.7 15.7 157 267-433 36-192 (410)
19 1s2m_A Putative ATP-dependent 99.9 9.3E-27 3.2E-31 233.6 16.0 157 267-433 20-176 (400)
20 3fmp_B ATP-dependent RNA helic 99.9 2.8E-27 9.4E-32 245.3 12.0 159 264-434 88-249 (479)
21 1xti_A Probable ATP-dependent 99.9 9.2E-27 3.1E-31 232.1 14.2 158 268-434 8-166 (391)
22 3fht_A ATP-dependent RNA helic 99.9 9.6E-27 3.3E-31 233.2 13.4 160 263-434 20-182 (412)
23 3eiq_A Eukaryotic initiation f 99.9 2.3E-26 8E-31 230.9 15.6 156 268-433 40-196 (414)
24 1fuu_A Yeast initiation factor 99.9 2.2E-26 7.4E-31 229.3 12.8 155 268-433 21-175 (394)
25 3pey_A ATP-dependent RNA helic 99.9 4.5E-26 1.5E-30 226.2 13.3 153 268-434 5-159 (395)
26 1hv8_A Putative ATP-dependent 99.9 1.3E-25 4.4E-30 220.8 14.3 154 268-433 6-160 (367)
27 3i5x_A ATP-dependent RNA helic 99.9 3.3E-26 1.1E-30 241.5 10.8 154 275-433 79-239 (563)
28 3sqw_A ATP-dependent RNA helic 99.9 8.4E-26 2.9E-30 240.7 12.8 160 269-433 18-188 (579)
29 2z0m_A 337AA long hypothetical 99.9 2.3E-24 8E-29 209.8 16.1 143 275-434 1-143 (337)
30 3oiy_A Reverse gyrase helicase 99.9 4.3E-24 1.5E-28 216.7 10.2 139 278-433 9-152 (414)
31 2zj8_A DNA helicase, putative 99.9 8.7E-23 3E-27 222.9 12.4 150 269-434 2-152 (720)
32 2va8_A SSO2462, SKI2-type heli 99.9 1.4E-22 4.9E-27 220.6 13.0 152 267-434 7-159 (715)
33 4a2p_A RIG-I, retinoic acid in 99.9 1.4E-22 4.9E-27 210.9 11.7 141 286-434 3-144 (556)
34 2ykg_A Probable ATP-dependent 99.9 1.5E-22 5.1E-27 218.5 12.2 147 280-434 3-150 (696)
35 3tbk_A RIG-I helicase domain; 99.9 2.3E-22 7.9E-27 208.6 11.7 138 289-434 3-141 (555)
36 1tf5_A Preprotein translocase 99.9 3.8E-22 1.3E-26 220.3 11.4 131 285-433 79-216 (844)
37 2p6r_A Afuhel308 helicase; pro 99.9 9.9E-23 3.4E-27 221.8 5.8 149 269-434 2-152 (702)
38 3b6e_A Interferon-induced heli 99.9 3.6E-22 1.2E-26 183.3 7.8 142 285-434 28-176 (216)
39 4ddu_A Reverse gyrase; topoiso 99.9 9E-22 3.1E-26 225.0 12.8 137 280-433 68-209 (1104)
40 3fho_A ATP-dependent RNA helic 99.9 1.9E-22 6.7E-27 212.1 6.2 152 269-434 120-273 (508)
41 2v1x_A ATP-dependent DNA helic 99.9 3.3E-21 1.1E-25 207.4 15.0 144 269-433 22-178 (591)
42 4a2q_A RIG-I, retinoic acid in 99.8 2E-21 6.8E-26 214.7 11.7 142 285-434 243-385 (797)
43 2fsf_A Preprotein translocase 99.8 8.2E-22 2.8E-26 217.4 8.2 130 286-433 71-207 (853)
44 1oyw_A RECQ helicase, ATP-depe 99.8 1.7E-21 5.9E-26 206.3 9.3 146 268-433 2-152 (523)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 3.5E-21 1.2E-25 219.4 10.5 135 280-434 47-189 (1054)
46 3l9o_A ATP-dependent RNA helic 99.8 1.5E-21 5.1E-26 223.3 6.3 143 268-434 162-304 (1108)
47 1nkt_A Preprotein translocase 99.8 1.8E-20 6.2E-25 207.3 11.3 131 285-433 107-244 (922)
48 4f92_B U5 small nuclear ribonu 99.8 4.8E-20 1.7E-24 218.2 14.0 148 274-434 910-1060(1724)
49 4a2w_A RIG-I, retinoic acid in 99.8 2.1E-20 7.1E-25 210.6 9.6 142 285-434 243-385 (936)
50 2ipc_A Preprotein translocase 99.8 3.1E-20 1.1E-24 205.3 10.4 131 285-433 75-215 (997)
51 4gl2_A Interferon-induced heli 99.8 3.8E-20 1.3E-24 199.8 8.2 138 289-434 6-150 (699)
52 1gm5_A RECG; helicase, replica 99.8 3.7E-19 1.3E-23 197.0 15.0 138 278-434 356-504 (780)
53 4f92_B U5 small nuclear ribonu 99.8 1.5E-19 5E-24 214.2 9.9 143 287-434 76-221 (1724)
54 1wp9_A ATP-dependent RNA helic 99.8 3.3E-18 1.1E-22 172.1 13.8 131 290-434 9-139 (494)
55 3llm_A ATP-dependent RNA helic 99.8 2.6E-18 9E-23 162.7 11.6 143 275-432 46-188 (235)
56 2xgj_A ATP-dependent RNA helic 99.8 1.3E-18 4.4E-23 197.5 11.2 126 284-434 81-206 (1010)
57 4a4z_A Antiviral helicase SKI2 99.7 3.6E-18 1.2E-22 193.6 11.8 127 285-434 35-161 (997)
58 1rif_A DAR protein, DNA helica 99.7 9.9E-18 3.4E-22 162.5 8.4 128 289-434 112-239 (282)
59 2jlq_A Serine protease subunit 99.7 1.8E-17 6.2E-22 172.0 9.5 121 287-432 1-122 (451)
60 2oca_A DAR protein, ATP-depend 99.7 1.6E-17 5.5E-22 173.1 8.2 129 288-434 111-239 (510)
61 2eyq_A TRCF, transcription-rep 99.7 2E-16 6.9E-21 181.7 17.6 144 273-435 586-740 (1151)
62 3crv_A XPD/RAD3 related DNA he 99.7 1.2E-16 4E-21 170.0 11.6 131 290-437 3-189 (551)
63 2whx_A Serine protease/ntpase/ 99.6 5.1E-17 1.8E-21 175.7 5.1 140 269-433 150-290 (618)
64 3o8b_A HCV NS3 protease/helica 99.6 8.4E-17 2.9E-21 175.1 6.0 115 293-436 220-334 (666)
65 2fwr_A DNA repair protein RAD2 99.6 5.5E-16 1.9E-20 159.9 11.7 113 290-434 93-206 (472)
66 2wv9_A Flavivirin protease NS2 99.6 4.6E-18 1.6E-22 185.6 -7.5 126 283-432 203-344 (673)
67 2fz4_A DNA repair protein RAD2 99.6 2.9E-15 9.9E-20 142.9 12.3 114 289-434 92-206 (237)
68 2xau_A PRE-mRNA-splicing facto 99.6 1.1E-14 3.9E-19 161.0 13.0 148 267-431 71-219 (773)
69 2vl7_A XPD; helicase, unknown 99.6 3.6E-15 1.2E-19 158.4 8.0 128 286-434 4-189 (540)
70 1yks_A Genome polyprotein [con 99.5 1E-15 3.4E-20 158.7 0.4 101 301-433 4-112 (440)
71 2v6i_A RNA helicase; membrane, 99.5 7.4E-14 2.5E-18 144.2 11.0 106 304-433 1-106 (431)
72 3h1t_A Type I site-specific re 99.5 1E-14 3.6E-19 155.1 4.6 130 289-434 177-316 (590)
73 2z83_A Helicase/nucleoside tri 99.5 6.2E-14 2.1E-18 145.9 10.1 110 299-432 15-124 (459)
74 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 9.4E-14 3.2E-18 157.9 8.6 140 277-433 251-414 (1038)
75 4a15_A XPD helicase, ATP-depen 99.3 3.3E-12 1.1E-16 138.2 9.7 82 290-383 3-88 (620)
76 3rc3_A ATP-dependent RNA helic 99.2 7.2E-12 2.4E-16 136.9 7.1 130 268-433 123-252 (677)
77 1z63_A Helicase of the SNF2/RA 99.2 9.7E-12 3.3E-16 129.1 7.4 124 289-434 36-163 (500)
78 3dmq_A RNA polymerase-associat 99.0 1.4E-10 4.8E-15 131.2 5.5 129 289-433 152-286 (968)
79 3mwy_W Chromo domain-containin 98.9 2.2E-09 7.5E-14 118.9 10.5 130 289-433 235-380 (800)
80 3jux_A Protein translocase sub 98.9 5.1E-09 1.7E-13 114.6 10.7 130 286-433 72-258 (822)
81 1z3i_X Similar to RAD54-like; 98.9 7.5E-09 2.6E-13 112.1 11.9 134 290-433 55-205 (644)
82 1w36_D RECD, exodeoxyribonucle 98.6 3.8E-08 1.3E-12 106.1 5.4 123 292-434 151-276 (608)
83 2gk6_A Regulator of nonsense t 97.5 0.00034 1.2E-08 75.4 10.6 70 288-368 178-247 (624)
84 4b3f_X DNA-binding protein smu 97.5 7.5E-05 2.6E-09 80.6 5.5 67 290-368 189-256 (646)
85 3upu_A ATP-dependent DNA helic 97.4 0.00015 5.1E-09 75.0 6.3 71 284-365 19-94 (459)
86 2xzl_A ATP-dependent helicase 97.4 0.00052 1.8E-08 76.3 10.6 69 289-368 359-427 (802)
87 3e1s_A Exodeoxyribonuclease V, 97.3 0.00038 1.3E-08 74.5 7.6 64 290-365 189-252 (574)
88 2wjy_A Regulator of nonsense t 97.2 0.00077 2.6E-08 74.9 9.7 69 289-368 355-423 (800)
89 1c4o_A DNA nucleotide excision 96.3 0.0044 1.5E-07 67.4 6.7 68 287-370 6-78 (664)
90 3lfu_A DNA helicase II; SF1 he 95.3 0.014 4.7E-07 62.1 5.1 72 289-370 8-79 (647)
91 3cpe_A Terminase, DNA packagin 94.9 0.095 3.2E-06 55.9 10.1 121 290-434 163-287 (592)
92 1uaa_A REP helicase, protein ( 94.1 0.047 1.6E-06 58.8 5.8 71 290-370 2-72 (673)
93 1pjr_A PCRA; DNA repair, DNA r 93.1 0.09 3.1E-06 57.4 5.8 71 289-369 10-80 (724)
94 3vkw_A Replicase large subunit 92.8 0.1 3.4E-06 54.3 5.3 44 307-367 163-206 (446)
95 3te6_A Regulatory protein SIR3 92.3 0.49 1.7E-05 46.8 9.4 18 304-321 44-61 (318)
96 3u4q_A ATP-dependent helicase/ 92.1 0.11 3.7E-06 60.2 5.0 73 289-369 9-81 (1232)
97 2hjv_A ATP-dependent RNA helic 91.7 1.3 4.5E-05 38.3 10.6 74 345-429 35-112 (163)
98 2chg_A Replication factor C sm 91.7 1.7 5.8E-05 37.9 11.4 40 268-320 14-53 (226)
99 2p6n_A ATP-dependent RNA helic 91.0 1.3 4.6E-05 39.8 10.2 73 345-428 54-130 (191)
100 3pfi_A Holliday junction ATP-d 90.9 1.3 4.5E-05 42.6 10.6 41 268-320 26-70 (338)
101 3bos_A Putative DNA replicatio 90.5 0.18 6E-06 45.5 3.8 17 304-320 51-67 (242)
102 2rb4_A ATP-dependent RNA helic 90.5 1.2 3.9E-05 39.1 9.0 72 345-427 34-109 (175)
103 1fuk_A Eukaryotic initiation f 90.4 1.8 6E-05 37.5 10.1 74 345-429 30-107 (165)
104 2b8t_A Thymidine kinase; deoxy 90.0 0.1 3.4E-06 49.2 1.7 93 304-434 11-103 (223)
105 1xx6_A Thymidine kinase; NESG, 89.9 0.19 6.5E-06 46.0 3.5 39 305-355 8-46 (191)
106 1hqc_A RUVB; extended AAA-ATPa 89.8 1.7 6E-05 41.3 10.4 44 268-320 9-53 (324)
107 3eaq_A Heat resistant RNA depe 89.7 2 6.8E-05 39.1 10.3 71 345-426 31-105 (212)
108 1l8q_A Chromosomal replication 89.3 0.65 2.2E-05 44.8 6.9 17 305-321 37-53 (324)
109 2d7d_A Uvrabc system protein B 89.1 0.37 1.3E-05 52.2 5.4 66 290-370 12-82 (661)
110 2orw_A Thymidine kinase; TMTK, 88.8 0.034 1.2E-06 50.3 -2.5 40 304-355 2-41 (184)
111 2o0j_A Terminase, DNA packagin 88.0 0.73 2.5E-05 46.8 6.5 71 290-370 163-233 (385)
112 3i5x_A ATP-dependent RNA helic 87.9 2.5 8.5E-05 43.7 10.7 78 344-429 338-419 (563)
113 2v1u_A Cell division control p 87.4 1.1 3.8E-05 43.3 7.2 18 304-321 43-60 (387)
114 3sqw_A ATP-dependent RNA helic 86.1 2.9 9.9E-05 43.8 10.1 78 344-429 287-368 (579)
115 2i4i_A ATP-dependent RNA helic 85.8 3.7 0.00013 40.2 10.1 73 344-427 275-351 (417)
116 2z4s_A Chromosomal replication 84.9 1.3 4.6E-05 45.2 6.7 17 305-321 130-146 (440)
117 1t5i_A C_terminal domain of A 84.1 5.7 0.00019 34.7 9.6 74 345-429 31-108 (172)
118 2qby_B CDC6 homolog 3, cell di 84.0 1.1 3.8E-05 43.6 5.3 17 305-321 45-61 (384)
119 2d7d_A Uvrabc system protein B 84.0 4.2 0.00014 43.8 10.3 78 344-432 444-525 (661)
120 3i32_A Heat resistant RNA depe 84.0 4.3 0.00015 39.5 9.5 71 345-426 28-102 (300)
121 3fht_A ATP-dependent RNA helic 83.3 3.9 0.00013 39.7 8.9 73 345-428 266-342 (412)
122 3u61_B DNA polymerase accessor 83.0 9.6 0.00033 36.2 11.5 39 268-321 23-64 (324)
123 3e2i_A Thymidine kinase; Zn-bi 83.0 0.85 2.9E-05 43.0 3.8 40 305-356 28-67 (219)
124 2jgn_A DBX, DDX3, ATP-dependen 82.7 2 6.9E-05 38.3 6.1 74 344-428 45-122 (185)
125 2j9r_A Thymidine kinase; TK1, 82.3 0.49 1.7E-05 44.4 1.9 40 305-356 28-67 (214)
126 1hv8_A Putative ATP-dependent 82.2 4.2 0.00014 38.6 8.6 75 344-429 237-315 (367)
127 1fnn_A CDC6P, cell division co 82.1 1.5 5E-05 42.6 5.3 15 307-321 46-60 (389)
128 3pey_A ATP-dependent RNA helic 81.4 5.1 0.00017 38.5 8.9 76 344-430 242-321 (395)
129 3ec2_A DNA replication protein 81.2 1 3.6E-05 39.3 3.5 18 304-321 37-54 (180)
130 2qby_A CDC6 homolog 1, cell di 81.2 1.2 4.2E-05 42.9 4.3 18 304-321 44-61 (386)
131 2zpa_A Uncharacterized protein 79.9 0.67 2.3E-05 50.5 2.1 61 290-365 175-237 (671)
132 2eyq_A TRCF, transcription-rep 79.9 2.5 8.6E-05 48.7 7.0 81 344-433 811-895 (1151)
133 1xti_A Probable ATP-dependent 79.5 4.9 0.00017 38.8 8.1 75 344-429 249-327 (391)
134 1s2m_A Putative ATP-dependent 79.4 9.7 0.00033 36.9 10.3 73 345-428 258-334 (400)
135 1e9r_A Conjugal transfer prote 78.7 1.2 4.2E-05 44.8 3.6 31 299-330 47-77 (437)
136 1w4r_A Thymidine kinase; type 78.6 0.61 2.1E-05 43.2 1.1 38 305-354 20-57 (195)
137 2db3_A ATP-dependent RNA helic 77.7 7 0.00024 39.3 8.9 70 347-427 302-375 (434)
138 2j0s_A ATP-dependent RNA helic 77.5 6.4 0.00022 38.5 8.3 72 346-428 277-352 (410)
139 2v1x_A ATP-dependent DNA helic 76.8 6 0.00021 42.0 8.4 74 344-428 266-343 (591)
140 1c4o_A DNA nucleotide excision 76.7 5.5 0.00019 42.9 8.2 77 345-432 439-519 (664)
141 3co5_A Putative two-component 76.7 1 3.5E-05 38.3 2.0 20 302-321 24-43 (143)
142 3n70_A Transport activator; si 76.2 1.3 4.3E-05 37.8 2.4 19 303-321 22-40 (145)
143 4b4t_M 26S protease regulatory 75.8 0.87 3E-05 47.0 1.5 53 266-321 176-231 (434)
144 1oyw_A RECQ helicase, ATP-depe 75.4 7.9 0.00027 40.3 8.7 74 344-428 235-312 (523)
145 1xwi_A SKD1 protein; VPS4B, AA 74.6 2.6 8.8E-05 41.1 4.4 49 267-321 8-61 (322)
146 1wp9_A ATP-dependent RNA helic 73.4 7.5 0.00026 38.0 7.6 75 344-429 360-446 (494)
147 3m6a_A ATP-dependent protease 73.4 4.2 0.00014 42.7 6.0 17 304-320 107-123 (543)
148 3cf0_A Transitional endoplasmi 72.6 2.8 9.6E-05 40.2 4.1 52 267-321 11-65 (301)
149 3h4m_A Proteasome-activating n 72.2 1 3.5E-05 42.2 0.9 51 268-321 14-67 (285)
150 1lv7_A FTSH; alpha/beta domain 71.7 3.3 0.00011 38.2 4.3 48 267-321 8-61 (257)
151 3b9p_A CG5977-PA, isoform A; A 71.7 3.5 0.00012 38.8 4.5 49 267-321 17-70 (297)
152 2yjt_D ATP-dependent RNA helic 73.7 0.85 2.9E-05 39.9 0.0 71 345-426 30-104 (170)
153 2r6a_A DNAB helicase, replicat 70.9 7 0.00024 39.8 6.9 27 304-331 202-228 (454)
154 2qz4_A Paraplegin; AAA+, SPG7, 70.2 3.6 0.00012 37.6 4.1 51 268-321 3-55 (262)
155 2orv_A Thymidine kinase; TP4A 70.0 3 0.0001 39.6 3.6 39 305-355 19-57 (234)
156 3cmu_A Protein RECA, recombina 69.6 6.1 0.00021 48.2 6.8 40 305-356 1427-1466(2050)
157 2z0m_A 337AA long hypothetical 69.5 12 0.0004 35.1 7.7 71 344-429 219-293 (337)
158 3hjh_A Transcription-repair-co 68.8 13 0.00043 38.8 8.3 52 304-370 13-64 (483)
159 2wv9_A Flavivirin protease NS2 67.9 7.9 0.00027 41.9 6.8 68 345-425 410-478 (673)
160 3uk6_A RUVB-like 2; hexameric 67.8 4.7 0.00016 39.0 4.6 47 267-321 40-86 (368)
161 3eie_A Vacuolar protein sortin 67.8 4.4 0.00015 39.1 4.4 49 267-321 14-67 (322)
162 2v6i_A RNA helicase; membrane, 66.9 7.2 0.00025 39.4 5.9 54 345-404 171-225 (431)
163 1yks_A Genome polyprotein [con 66.9 7.1 0.00024 39.6 5.9 68 345-425 177-245 (440)
164 3hr8_A Protein RECA; alpha and 65.8 3.5 0.00012 41.3 3.3 26 304-330 60-85 (356)
165 1xp8_A RECA protein, recombina 65.6 4.2 0.00014 40.8 3.8 26 304-330 73-98 (366)
166 2kjq_A DNAA-related protein; s 65.3 2.9 0.0001 36.1 2.3 17 304-320 35-51 (149)
167 4b4t_J 26S protease regulatory 64.6 2 6.7E-05 44.1 1.1 53 266-321 143-198 (405)
168 3tbk_A RIG-I helicase domain; 64.4 15 0.00051 37.0 7.8 79 344-429 388-479 (555)
169 2xau_A PRE-mRNA-splicing facto 64.1 12 0.00041 41.1 7.4 75 345-425 303-392 (773)
170 2x8a_A Nuclear valosin-contain 63.7 1.1 3.9E-05 42.7 -0.8 52 267-321 6-60 (274)
171 3jvv_A Twitching mobility prot 63.0 3.9 0.00013 40.8 3.0 18 304-321 122-139 (356)
172 2oap_1 GSPE-2, type II secreti 62.9 4.4 0.00015 42.4 3.5 54 263-321 222-276 (511)
173 3eiq_A Eukaryotic initiation f 62.8 6.6 0.00023 38.2 4.6 73 345-428 280-356 (414)
174 1sxj_A Activator 1 95 kDa subu 62.4 6.6 0.00022 40.8 4.7 48 268-321 36-93 (516)
175 4gl2_A Interferon-induced heli 62.4 6 0.0002 42.0 4.5 77 345-427 400-489 (699)
176 2w58_A DNAI, primosome compone 62.2 5.5 0.00019 35.1 3.5 16 306-321 55-70 (202)
177 1ixz_A ATP-dependent metallopr 61.2 2.2 7.5E-05 39.4 0.7 49 267-320 12-64 (254)
178 4a1f_A DNAB helicase, replicat 61.1 4.2 0.00014 40.5 2.8 26 304-330 45-70 (338)
179 1njg_A DNA polymerase III subu 60.1 8.2 0.00028 33.7 4.3 39 268-321 20-61 (250)
180 3vfd_A Spastin; ATPase, microt 60.0 7.1 0.00024 38.7 4.3 48 268-321 112-164 (389)
181 2r62_A Cell division protease 59.8 3.4 0.00011 38.3 1.7 17 305-321 44-60 (268)
182 3d8b_A Fidgetin-like protein 1 59.6 7.6 0.00026 38.1 4.4 52 267-321 80-133 (357)
183 1jbk_A CLPB protein; beta barr 58.8 3.4 0.00012 35.0 1.5 17 305-321 43-59 (195)
184 3hws_A ATP-dependent CLP prote 58.8 6.3 0.00022 38.5 3.6 18 304-321 50-67 (363)
185 2c9o_A RUVB-like 1; hexameric 58.1 7.9 0.00027 39.4 4.3 48 267-322 33-80 (456)
186 2bjv_A PSP operon transcriptio 58.1 4.5 0.00015 37.5 2.3 17 304-320 28-44 (265)
187 2oca_A DAR protein, ATP-depend 58.0 33 0.0011 34.7 9.0 76 345-430 347-426 (510)
188 3o8b_A HCV NS3 protease/helica 57.5 16 0.00054 39.7 6.8 67 344-425 395-461 (666)
189 3nbx_X ATPase RAVA; AAA+ ATPas 56.5 8 0.00028 40.4 4.1 41 279-320 16-56 (500)
190 1iy2_A ATP-dependent metallopr 56.3 3 0.0001 39.2 0.7 50 267-321 36-89 (278)
191 2ykg_A Probable ATP-dependent 56.0 7 0.00024 41.4 3.7 79 344-429 397-488 (696)
192 4b4t_L 26S protease subunit RP 55.9 2.3 7.9E-05 43.9 -0.1 53 266-321 176-231 (437)
193 3rc3_A ATP-dependent RNA helic 55.8 31 0.0011 37.4 8.7 75 346-432 321-401 (677)
194 2whx_A Serine protease/ntpase/ 55.8 22 0.00074 38.0 7.4 67 345-424 355-422 (618)
195 3b85_A Phosphate starvation-in 55.5 9.8 0.00034 34.7 4.1 31 291-321 8-38 (208)
196 2i1q_A DNA repair and recombin 55.4 12 0.00043 35.8 5.0 18 304-321 97-114 (322)
197 2qp9_X Vacuolar protein sortin 55.3 7.1 0.00024 38.4 3.3 48 268-321 48-100 (355)
198 4b4t_H 26S protease regulatory 55.0 2.8 9.5E-05 43.7 0.3 53 266-321 204-259 (467)
199 3nwn_A Kinesin-like protein KI 54.4 5.7 0.0002 39.9 2.5 25 298-322 96-122 (359)
200 4b4t_K 26S protease regulatory 54.3 3.4 0.00012 42.5 0.8 53 266-321 167-222 (428)
201 1ofh_A ATP-dependent HSL prote 54.2 15 0.0005 34.2 5.2 17 305-321 50-66 (310)
202 2p65_A Hypothetical protein PF 53.6 3.4 0.00012 35.1 0.6 17 305-321 43-59 (187)
203 1bg2_A Kinesin; motor protein, 53.4 6.6 0.00023 38.8 2.7 25 298-322 69-95 (325)
204 1iqp_A RFCS; clamp loader, ext 53.3 11 0.00037 35.4 4.1 39 268-321 22-62 (327)
205 1sxj_D Activator 1 41 kDa subu 52.9 6.2 0.00021 37.7 2.4 16 306-321 59-74 (353)
206 2jlq_A Serine protease subunit 52.9 18 0.00062 36.6 6.0 67 346-425 189-256 (451)
207 2r44_A Uncharacterized protein 52.7 4.4 0.00015 38.9 1.3 21 300-320 41-61 (331)
208 3dc4_A Kinesin-like protein NO 52.7 6.3 0.00022 39.3 2.4 25 298-322 86-112 (344)
209 3syl_A Protein CBBX; photosynt 52.6 3.8 0.00013 38.6 0.8 17 305-321 67-83 (309)
210 4ag6_A VIRB4 ATPase, type IV s 52.6 8.7 0.0003 38.0 3.5 18 304-321 34-51 (392)
211 3iij_A Coilin-interacting nucl 52.6 4.8 0.00016 34.9 1.4 20 302-321 8-27 (180)
212 1p9r_A General secretion pathw 52.6 8.5 0.00029 39.3 3.5 40 268-321 144-183 (418)
213 2zts_A Putative uncharacterize 52.0 7.7 0.00026 34.9 2.8 18 304-321 29-46 (251)
214 1kgd_A CASK, peripheral plasma 51.9 5 0.00017 35.1 1.4 18 303-320 3-20 (180)
215 4b4t_I 26S protease regulatory 51.8 4.5 0.00015 41.8 1.3 53 266-321 177-232 (437)
216 3t0q_A AGR253WP; kinesin, alph 51.8 6.8 0.00023 39.1 2.5 25 298-322 77-103 (349)
217 2zan_A Vacuolar protein sortin 51.7 12 0.00041 38.1 4.4 49 267-321 130-183 (444)
218 4a14_A Kinesin, kinesin-like p 51.6 7.3 0.00025 38.8 2.7 25 298-322 75-101 (344)
219 2w0m_A SSO2452; RECA, SSPF, un 51.2 10 0.00035 33.5 3.4 20 302-321 20-39 (235)
220 2q6t_A DNAB replication FORK h 50.9 6.4 0.00022 40.0 2.2 27 304-331 199-225 (444)
221 2vvg_A Kinesin-2; motor protei 50.8 7.6 0.00026 38.8 2.7 25 298-322 81-107 (350)
222 2gza_A Type IV secretion syste 50.8 5.7 0.00019 39.4 1.8 19 302-320 172-190 (361)
223 1f9v_A Kinesin-like protein KA 50.7 7.7 0.00026 38.7 2.7 25 298-322 76-102 (347)
224 2y65_A Kinesin, kinesin heavy 50.5 7.7 0.00026 39.0 2.7 25 298-322 76-102 (365)
225 2h58_A Kinesin-like protein KI 50.1 8 0.00027 38.3 2.7 26 297-322 71-98 (330)
226 2zfi_A Kinesin-like protein KI 50.1 7.9 0.00027 38.9 2.7 25 298-322 81-107 (366)
227 2gno_A DNA polymerase III, gam 50.0 22 0.00077 34.3 5.9 15 307-321 20-34 (305)
228 2dr3_A UPF0273 protein PH0284; 49.9 7.4 0.00025 35.0 2.3 53 303-368 21-73 (247)
229 1u0j_A DNA replication protein 49.7 14 0.00047 35.6 4.2 44 277-323 73-122 (267)
230 4etp_A Kinesin-like protein KA 49.5 8 0.00027 39.3 2.7 25 298-322 132-158 (403)
231 1goj_A Kinesin, kinesin heavy 49.4 8 0.00027 38.7 2.6 25 298-322 72-98 (355)
232 2chq_A Replication factor C sm 49.3 13 0.00044 34.7 3.9 41 268-321 14-54 (319)
233 2nr8_A Kinesin-like protein KI 49.0 7.8 0.00027 38.8 2.5 26 297-322 94-121 (358)
234 3b6u_A Kinesin-like protein KI 48.9 7.9 0.00027 39.1 2.5 24 298-321 93-118 (372)
235 3lre_A Kinesin-like protein KI 48.9 8.1 0.00028 38.6 2.6 25 298-322 97-123 (355)
236 3gbj_A KIF13B protein; kinesin 48.8 7.9 0.00027 38.7 2.5 25 298-322 84-110 (354)
237 2qgz_A Helicase loader, putati 48.5 9.1 0.00031 37.0 2.8 17 305-321 152-168 (308)
238 1x88_A Kinesin-like protein KI 48.5 7.7 0.00026 38.9 2.3 25 298-322 80-106 (359)
239 2wbe_C Bipolar kinesin KRP-130 48.3 8 0.00027 39.0 2.4 24 298-321 92-117 (373)
240 1t5c_A CENP-E protein, centrom 48.2 8.2 0.00028 38.5 2.5 25 298-322 69-95 (349)
241 3u06_A Protein claret segregat 47.7 8.1 0.00028 39.5 2.4 26 297-322 129-156 (412)
242 4a2p_A RIG-I, retinoic acid in 47.4 19 0.00064 36.4 5.1 79 344-429 389-480 (556)
243 4akg_A Glutathione S-transfera 47.3 11 0.00036 47.4 3.7 47 276-323 891-941 (2695)
244 2pt7_A CAG-ALFA; ATPase, prote 47.2 6.5 0.00022 38.6 1.5 19 302-320 168-186 (330)
245 1ojl_A Transcriptional regulat 47.2 7.6 0.00026 37.4 2.0 18 304-321 24-41 (304)
246 2heh_A KIF2C protein; kinesin, 47.1 8.9 0.0003 38.9 2.6 25 298-322 126-152 (387)
247 3cob_A Kinesin heavy chain-lik 47.1 7.5 0.00026 39.2 2.0 25 298-322 71-97 (369)
248 3vaa_A Shikimate kinase, SK; s 46.8 7 0.00024 34.6 1.6 18 304-321 24-41 (199)
249 3dmq_A RNA polymerase-associat 46.7 30 0.001 38.9 7.0 77 344-430 502-584 (968)
250 2eyu_A Twitching motility prot 46.5 5.8 0.0002 37.6 1.0 20 302-321 22-41 (261)
251 3bfn_A Kinesin-like protein KI 46.5 8.2 0.00028 39.2 2.2 23 300-322 92-116 (388)
252 1v8k_A Kinesin-like protein KI 46.3 8.7 0.0003 39.3 2.4 25 298-322 146-172 (410)
253 1g8p_A Magnesium-chelatase 38 46.1 17 0.00058 34.6 4.3 17 305-321 45-61 (350)
254 3io5_A Recombination and repai 45.8 19 0.00066 35.8 4.7 41 307-357 30-70 (333)
255 1lvg_A Guanylate kinase, GMP k 45.7 7.3 0.00025 34.8 1.5 18 304-321 3-20 (198)
256 2rep_A Kinesin-like protein KI 45.5 9.1 0.00031 38.6 2.3 25 298-322 107-133 (376)
257 2j41_A Guanylate kinase; GMP, 45.3 7.3 0.00025 34.1 1.4 18 303-320 4-21 (207)
258 3fmp_B ATP-dependent RNA helic 45.1 4.5 0.00015 40.9 0.0 70 345-425 333-406 (479)
259 3trf_A Shikimate kinase, SK; a 45.1 7.7 0.00026 33.5 1.5 17 305-321 5-21 (185)
260 1sxj_E Activator 1 40 kDa subu 44.8 22 0.00074 34.0 4.9 42 268-321 11-52 (354)
261 1d2n_A N-ethylmaleimide-sensit 44.7 5.3 0.00018 37.2 0.4 16 306-321 65-80 (272)
262 3hu3_A Transitional endoplasmi 44.1 14 0.00047 38.4 3.5 52 268-321 201-254 (489)
263 2qor_A Guanylate kinase; phosp 44.0 7.4 0.00025 34.6 1.3 19 302-320 9-27 (204)
264 2owm_A Nckin3-434, related to 43.6 12 0.00043 38.5 3.0 26 297-322 127-154 (443)
265 3lw7_A Adenylate kinase relate 43.6 7.7 0.00026 32.5 1.2 14 307-320 3-16 (179)
266 3kl4_A SRP54, signal recogniti 43.5 19 0.00066 36.9 4.5 16 306-321 98-113 (433)
267 1qhx_A CPT, protein (chloramph 43.5 8.2 0.00028 33.1 1.4 17 305-321 3-19 (178)
268 3tau_A Guanylate kinase, GMP k 43.3 8.5 0.00029 34.5 1.6 17 304-320 7-23 (208)
269 2z83_A Helicase/nucleoside tri 43.2 19 0.00065 36.6 4.4 68 345-425 190-258 (459)
270 1kht_A Adenylate kinase; phosp 43.1 8.5 0.00029 33.1 1.5 18 304-321 2-19 (192)
271 2va8_A SSO2462, SKI2-type heli 42.7 59 0.002 34.6 8.3 75 345-425 252-361 (715)
272 1zp6_A Hypothetical protein AT 42.1 6.1 0.00021 34.3 0.4 18 303-320 7-24 (191)
273 1sxj_C Activator 1 40 kDa subu 41.6 24 0.00084 33.8 4.7 39 268-321 22-62 (340)
274 3a8t_A Adenylate isopentenyltr 41.6 7.8 0.00027 38.7 1.1 17 305-321 40-56 (339)
275 3tr0_A Guanylate kinase, GMP k 41.2 9.7 0.00033 33.3 1.6 17 304-320 6-22 (205)
276 2ce7_A Cell division protein F 41.0 24 0.00083 36.5 4.8 51 268-321 13-65 (476)
277 3vkg_A Dynein heavy chain, cyt 40.9 12 0.00042 47.6 2.9 47 276-323 874-924 (3245)
278 4a2w_A RIG-I, retinoic acid in 40.7 25 0.00084 39.4 5.1 80 343-429 629-721 (936)
279 3oiy_A Reverse gyrase helicase 40.3 22 0.00077 34.8 4.3 70 346-429 253-329 (414)
280 1kag_A SKI, shikimate kinase I 40.1 11 0.00036 32.1 1.6 16 305-320 4-19 (173)
281 3dm5_A SRP54, signal recogniti 39.9 51 0.0018 33.9 7.0 16 306-321 101-116 (443)
282 3fho_A ATP-dependent RNA helic 39.8 7.6 0.00026 40.0 0.7 72 345-427 357-432 (508)
283 2ze6_A Isopentenyl transferase 39.7 9.3 0.00032 35.7 1.3 15 307-321 3-17 (253)
284 1um8_A ATP-dependent CLP prote 38.9 9.5 0.00033 37.4 1.3 17 305-321 72-88 (376)
285 4a2q_A RIG-I, retinoic acid in 38.7 31 0.001 37.6 5.4 79 344-429 630-721 (797)
286 3h1t_A Type I site-specific re 38.5 56 0.0019 33.8 7.2 80 344-429 438-526 (590)
287 1z6g_A Guanylate kinase; struc 38.3 12 0.00041 34.0 1.8 18 303-320 21-38 (218)
288 1ex7_A Guanylate kinase; subst 38.1 11 0.00039 34.0 1.5 22 306-332 2-23 (186)
289 3foz_A TRNA delta(2)-isopenten 38.0 10 0.00035 37.5 1.2 14 308-321 13-26 (316)
290 3exa_A TRNA delta(2)-isopenten 37.7 10 0.00035 37.6 1.2 16 306-321 4-19 (322)
291 1in4_A RUVB, holliday junction 37.6 24 0.00084 34.0 4.0 16 306-321 52-67 (334)
292 2ewv_A Twitching motility prot 37.6 9.5 0.00032 38.0 1.0 19 303-321 134-152 (372)
293 1y63_A LMAJ004144AAA protein; 37.3 12 0.00041 32.7 1.6 18 304-321 9-26 (184)
294 1ry6_A Internal kinesin; kines 37.0 15 0.0005 36.9 2.3 19 304-322 82-102 (360)
295 3t15_A Ribulose bisphosphate c 37.0 9.4 0.00032 36.4 0.8 15 306-320 37-51 (293)
296 1ly1_A Polynucleotide kinase; 37.0 11 0.00038 32.0 1.3 15 307-321 4-18 (181)
297 3ney_A 55 kDa erythrocyte memb 36.7 12 0.0004 34.2 1.4 18 303-320 17-34 (197)
298 1znw_A Guanylate kinase, GMP k 36.6 13 0.00043 33.2 1.6 21 301-321 16-36 (207)
299 4fcw_A Chaperone protein CLPB; 36.5 9.3 0.00032 35.8 0.7 16 306-321 48-63 (311)
300 1gku_B Reverse gyrase, TOP-RG; 36.2 30 0.001 39.3 5.0 76 345-430 275-352 (1054)
301 3u4q_B ATP-dependent helicase/ 36.2 17 0.00058 41.6 2.9 39 309-356 5-43 (1166)
302 4eun_A Thermoresistant glucoki 36.1 13 0.00044 32.9 1.6 18 304-321 28-45 (200)
303 4h1g_A Maltose binding protein 36.1 15 0.00052 39.8 2.4 25 297-321 453-479 (715)
304 2dhr_A FTSH; AAA+ protein, hex 35.9 33 0.0011 35.8 4.8 48 267-321 27-80 (499)
305 1jr3_A DNA polymerase III subu 35.8 30 0.001 33.0 4.3 39 268-321 13-54 (373)
306 3k1j_A LON protease, ATP-depen 35.6 24 0.00084 37.2 3.9 20 302-321 57-76 (604)
307 3a00_A Guanylate kinase, GMP k 35.5 14 0.00047 32.4 1.6 15 306-320 2-16 (186)
308 2ehv_A Hypothetical protein PH 35.3 13 0.00046 33.3 1.6 21 302-322 27-47 (251)
309 4gp7_A Metallophosphoesterase; 35.2 11 0.00039 32.6 1.0 20 304-323 8-27 (171)
310 1fuu_A Yeast initiation factor 35.0 8.1 0.00028 37.2 0.0 71 345-426 259-333 (394)
311 3kb2_A SPBC2 prophage-derived 35.0 13 0.00043 31.4 1.2 15 307-321 3-17 (173)
312 1s96_A Guanylate kinase, GMP k 34.7 14 0.00048 33.9 1.6 20 302-321 13-32 (219)
313 1sxj_B Activator 1 37 kDa subu 34.5 33 0.0011 31.8 4.3 39 268-321 18-58 (323)
314 1knq_A Gluconate kinase; ALFA/ 34.3 12 0.00041 32.0 1.0 18 304-321 7-24 (175)
315 3lnc_A Guanylate kinase, GMP k 34.1 16 0.00054 33.0 1.8 18 304-321 26-43 (231)
316 3cm0_A Adenylate kinase; ATP-b 34.1 10 0.00035 32.6 0.5 18 304-321 3-20 (186)
317 3lda_A DNA repair protein RAD5 34.1 30 0.001 35.0 4.0 18 305-322 178-195 (400)
318 2ffh_A Protein (FFH); SRP54, s 33.8 59 0.002 33.1 6.2 18 304-321 97-114 (425)
319 3cmw_A Protein RECA, recombina 32.9 53 0.0018 39.5 6.4 49 306-369 1432-1480(1706)
320 3nwj_A ATSK2; P loop, shikimat 32.7 19 0.00064 33.9 2.1 22 300-321 43-64 (250)
321 3crm_A TRNA delta(2)-isopenten 32.5 14 0.00048 36.5 1.2 15 307-321 7-21 (323)
322 3cf2_A TER ATPase, transitiona 32.4 14 0.00048 41.0 1.4 52 266-320 472-526 (806)
323 3bgw_A DNAB-like replicative h 32.1 26 0.00089 35.7 3.3 26 304-330 196-221 (444)
324 2ius_A DNA translocase FTSK; n 32.1 19 0.00066 37.7 2.3 19 304-322 166-184 (512)
325 3bh0_A DNAB-like replicative h 32.0 45 0.0015 32.0 4.8 27 303-330 66-92 (315)
326 3d3q_A TRNA delta(2)-isopenten 31.7 15 0.00051 36.6 1.3 15 307-321 9-23 (340)
327 2qmh_A HPR kinase/phosphorylas 31.6 15 0.00052 34.1 1.3 17 304-320 33-49 (205)
328 1tue_A Replication protein E1; 31.5 16 0.00053 34.2 1.3 52 276-330 27-82 (212)
329 2p6r_A Afuhel308 helicase; pro 31.2 67 0.0023 34.2 6.5 75 345-425 242-345 (702)
330 1tev_A UMP-CMP kinase; ploop, 31.1 14 0.0005 31.6 1.0 17 305-321 3-19 (196)
331 2v54_A DTMP kinase, thymidylat 30.8 16 0.00053 31.9 1.2 17 304-320 3-19 (204)
332 1m7g_A Adenylylsulfate kinase; 30.6 18 0.00063 32.1 1.6 29 292-321 13-41 (211)
333 2bdt_A BH3686; alpha-beta prot 30.4 17 0.00057 31.6 1.3 16 306-321 3-18 (189)
334 1f2t_A RAD50 ABC-ATPase; DNA d 30.1 17 0.00058 31.1 1.3 14 308-321 26-39 (149)
335 3f9v_A Minichromosome maintena 30.1 19 0.00064 38.3 1.8 14 307-320 329-342 (595)
336 3c8u_A Fructokinase; YP_612366 29.7 18 0.0006 32.3 1.3 17 304-320 21-37 (208)
337 3qf7_A RAD50; ABC-ATPase, ATPa 29.6 13 0.00045 36.8 0.5 16 307-322 25-40 (365)
338 3kta_A Chromosome segregation 29.2 17 0.00057 31.3 1.0 15 307-321 28-42 (182)
339 2c95_A Adenylate kinase 1; tra 29.1 19 0.00066 31.0 1.4 18 304-321 8-25 (196)
340 2cvh_A DNA repair and recombin 29.0 17 0.00058 31.9 1.1 19 304-322 19-37 (220)
341 1u94_A RECA protein, recombina 28.9 36 0.0012 33.7 3.6 26 304-330 62-87 (356)
342 3uie_A Adenylyl-sulfate kinase 28.6 17 0.0006 32.0 1.1 18 304-321 24-41 (200)
343 1ye8_A Protein THEP1, hypothet 28.6 19 0.00066 31.8 1.4 15 307-321 2-16 (178)
344 2w00_A HSDR, R.ECOR124I; ATP-b 28.5 1.7E+02 0.0059 33.2 9.5 26 344-369 536-561 (1038)
345 1gvn_B Zeta; postsegregational 28.5 20 0.00067 34.2 1.5 17 305-321 33-49 (287)
346 3lwd_A 6-phosphogluconolactona 28.5 84 0.0029 29.0 5.8 27 403-429 44-70 (226)
347 2plr_A DTMP kinase, probable t 28.4 17 0.00057 31.7 0.9 17 304-320 3-19 (213)
348 3t61_A Gluconokinase; PSI-biol 28.3 19 0.00065 31.6 1.3 16 306-321 19-34 (202)
349 2rhm_A Putative kinase; P-loop 28.3 17 0.00057 31.3 0.9 17 305-321 5-21 (193)
350 3tif_A Uncharacterized ABC tra 28.2 21 0.00071 33.0 1.6 17 304-320 30-46 (235)
351 3pxg_A Negative regulator of g 28.0 27 0.00093 35.6 2.6 18 304-321 200-217 (468)
352 1cn3_F Fragment of coat protei 27.9 20 0.00067 22.4 0.9 18 63-80 1-18 (29)
353 3eph_A TRNA isopentenyltransfe 27.5 18 0.0006 37.1 1.0 14 308-321 5-18 (409)
354 2qt1_A Nicotinamide riboside k 27.4 13 0.00045 32.8 0.1 22 299-320 15-36 (207)
355 1nks_A Adenylate kinase; therm 27.4 19 0.00063 30.8 1.0 14 307-320 3-16 (194)
356 1via_A Shikimate kinase; struc 27.1 22 0.00076 30.4 1.5 15 307-321 6-20 (175)
357 2cdn_A Adenylate kinase; phosp 27.1 19 0.00064 31.7 1.0 17 305-321 20-36 (201)
358 3cf2_A TER ATPase, transitiona 26.9 53 0.0018 36.4 4.7 16 306-321 239-254 (806)
359 1w36_B RECB, exodeoxyribonucle 26.8 42 0.0014 38.5 4.1 65 303-368 15-79 (1180)
360 2z43_A DNA repair and recombin 26.8 34 0.0012 32.9 2.9 18 304-321 106-123 (324)
361 1n0w_A DNA repair protein RAD5 26.8 22 0.00077 31.7 1.5 20 303-322 22-41 (243)
362 2iut_A DNA translocase FTSK; n 26.7 30 0.001 36.9 2.6 25 304-328 213-237 (574)
363 2bwj_A Adenylate kinase 5; pho 26.4 22 0.00075 30.7 1.3 18 304-321 11-28 (199)
364 1zuh_A Shikimate kinase; alpha 26.4 23 0.00077 30.1 1.4 16 306-321 8-23 (168)
365 1aky_A Adenylate kinase; ATP:A 26.4 24 0.00081 31.5 1.6 17 305-321 4-20 (220)
366 2r2a_A Uncharacterized protein 26.3 22 0.00076 32.2 1.4 14 308-321 8-21 (199)
367 2vli_A Antibiotic resistance p 25.5 26 0.00089 29.9 1.6 18 304-321 4-21 (183)
368 3pxi_A Negative regulator of g 25.3 22 0.00075 38.5 1.3 18 304-321 200-217 (758)
369 2yvu_A Probable adenylyl-sulfa 25.3 22 0.00074 30.8 1.1 18 304-321 12-29 (186)
370 1ypw_A Transitional endoplasmi 25.3 10 0.00035 41.9 -1.4 52 266-320 472-526 (806)
371 2cbz_A Multidrug resistance-as 25.3 22 0.00074 33.0 1.1 17 304-320 30-46 (237)
372 4a74_A DNA repair and recombin 25.2 20 0.00068 31.7 0.8 19 303-321 23-41 (231)
373 2fsf_A Preprotein translocase 25.0 1.6E+02 0.0055 32.8 8.1 54 345-404 441-497 (853)
374 2pez_A Bifunctional 3'-phospho 25.0 22 0.00076 30.5 1.1 18 304-321 4-21 (179)
375 3fb4_A Adenylate kinase; psych 24.9 24 0.00081 31.2 1.3 15 307-321 2-16 (216)
376 2jaq_A Deoxyguanosine kinase; 24.9 24 0.00081 30.5 1.2 14 307-320 2-15 (205)
377 4akg_A Glutathione S-transfera 24.9 27 0.00092 43.9 2.1 20 302-321 1264-1283(2695)
378 2bbw_A Adenylate kinase 4, AK4 24.8 23 0.0008 32.3 1.3 16 305-320 27-42 (246)
379 1zak_A Adenylate kinase; ATP:A 24.8 25 0.00087 31.3 1.5 17 305-321 5-21 (222)
380 1zd8_A GTP:AMP phosphotransfer 24.8 24 0.00082 31.7 1.3 17 305-321 7-23 (227)
381 1e6c_A Shikimate kinase; phosp 24.7 24 0.00084 29.7 1.3 16 306-321 3-18 (173)
382 1g41_A Heat shock protein HSLU 24.4 22 0.00074 36.7 1.0 17 305-321 50-66 (444)
383 1qf9_A UMP/CMP kinase, protein 24.2 23 0.0008 30.2 1.1 15 307-321 8-22 (194)
384 3pvs_A Replication-associated 24.1 25 0.00085 35.9 1.4 16 306-321 51-66 (447)
385 1ak2_A Adenylate kinase isoenz 24.1 26 0.0009 31.7 1.4 17 304-320 15-31 (233)
386 3asz_A Uridine kinase; cytidin 24.0 22 0.00076 31.3 0.9 17 305-321 6-22 (211)
387 3auy_A DNA double-strand break 23.9 23 0.00078 34.9 1.0 14 308-321 28-41 (371)
388 3dl0_A Adenylate kinase; phosp 23.7 26 0.00089 31.0 1.3 15 307-321 2-16 (216)
389 1nlf_A Regulatory protein REPA 23.6 23 0.00077 33.1 0.9 23 300-322 25-47 (279)
390 1nij_A Hypothetical protein YJ 23.5 64 0.0022 30.9 4.2 13 308-320 7-19 (318)
391 2iyv_A Shikimate kinase, SK; t 23.5 30 0.001 29.6 1.7 16 306-321 3-18 (184)
392 2i3b_A HCR-ntpase, human cance 23.4 30 0.001 30.9 1.6 17 305-321 1-17 (189)
393 2pze_A Cystic fibrosis transme 23.4 29 0.00098 31.9 1.6 17 304-320 33-49 (229)
394 2zj8_A DNA helicase, putative 23.4 98 0.0033 33.0 6.0 76 345-427 237-344 (720)
395 1cke_A CK, MSSA, protein (cyti 23.3 26 0.0009 31.0 1.3 16 306-321 6-21 (227)
396 1ukz_A Uridylate kinase; trans 23.2 27 0.00092 30.5 1.3 16 306-321 16-31 (203)
397 2ri0_A Glucosamine-6-phosphate 23.2 1.8E+02 0.0061 26.3 7.0 60 349-428 4-64 (234)
398 2fhz_B Colicin-E5; protein-pro 23.0 34 0.0012 28.2 1.7 27 75-101 66-92 (108)
399 4ddu_A Reverse gyrase; topoiso 22.9 69 0.0024 36.6 4.9 70 346-429 310-386 (1104)
400 1g6h_A High-affinity branched- 22.8 30 0.001 32.3 1.6 17 304-320 32-48 (257)
401 2wwf_A Thymidilate kinase, put 22.6 29 0.00098 30.4 1.3 18 304-321 9-26 (212)
402 1cr0_A DNA primase/helicase; R 22.6 28 0.00097 32.6 1.4 20 302-321 32-51 (296)
403 2ghi_A Transport protein; mult 22.5 31 0.001 32.4 1.6 17 304-320 45-61 (260)
404 2pcj_A ABC transporter, lipopr 22.5 28 0.00097 31.8 1.3 17 304-320 29-45 (224)
405 1nn5_A Similar to deoxythymidy 22.5 29 0.001 30.3 1.4 18 304-321 8-25 (215)
406 1sgw_A Putative ABC transporte 22.5 32 0.0011 31.4 1.7 17 304-320 34-50 (214)
407 3mm4_A Histidine kinase homolo 22.0 2E+02 0.0069 24.9 6.9 70 299-368 14-84 (206)
408 2pt5_A Shikimate kinase, SK; a 22.0 30 0.001 29.1 1.3 15 307-321 2-16 (168)
409 2v9p_A Replication protein E1; 21.9 28 0.00097 33.9 1.2 17 304-320 125-141 (305)
410 2if2_A Dephospho-COA kinase; a 21.8 27 0.00094 30.5 1.0 15 307-321 3-17 (204)
411 3lhi_A Putative 6-phosphogluco 21.8 78 0.0027 29.2 4.2 26 403-428 45-70 (232)
412 2pbr_A DTMP kinase, thymidylat 21.7 30 0.001 29.5 1.3 13 308-320 3-15 (195)
413 2ff7_A Alpha-hemolysin translo 21.7 33 0.0011 32.0 1.6 17 304-320 34-50 (247)
414 1ji0_A ABC transporter; ATP bi 21.6 33 0.0011 31.7 1.6 17 304-320 31-47 (240)
415 3sfz_A APAF-1, apoptotic pepti 21.4 75 0.0026 35.4 4.7 31 376-406 237-267 (1249)
416 1mv5_A LMRA, multidrug resista 21.3 28 0.00096 32.2 1.0 17 304-320 27-43 (243)
417 3a4m_A L-seryl-tRNA(SEC) kinas 21.3 30 0.001 32.1 1.3 16 306-321 5-20 (260)
418 3o38_A Short chain dehydrogena 21.3 4.3E+02 0.015 23.6 9.3 82 303-405 20-110 (266)
419 3be4_A Adenylate kinase; malar 21.3 32 0.0011 30.8 1.4 16 305-320 5-20 (217)
420 1a5t_A Delta prime, HOLB; zinc 21.1 48 0.0016 31.9 2.7 30 292-321 4-40 (334)
421 2qen_A Walker-type ATPase; unk 21.1 42 0.0014 31.4 2.3 16 305-320 31-46 (350)
422 3gfo_A Cobalt import ATP-bindi 20.9 34 0.0011 32.6 1.5 17 304-320 33-49 (275)
423 1jjv_A Dephospho-COA kinase; P 20.9 32 0.0011 30.2 1.3 15 307-321 4-18 (206)
424 1b0u_A Histidine permease; ABC 20.9 34 0.0012 32.1 1.6 17 304-320 31-47 (262)
425 1rj9_A FTSY, signal recognitio 20.8 34 0.0012 33.1 1.5 18 304-321 101-118 (304)
426 2z0h_A DTMP kinase, thymidylat 20.7 33 0.0011 29.5 1.3 14 308-321 3-16 (197)
427 4g1u_C Hemin import ATP-bindin 20.6 35 0.0012 32.2 1.5 17 304-320 36-52 (266)
428 2zr9_A Protein RECA, recombina 20.6 43 0.0015 32.9 2.3 19 303-321 59-77 (349)
429 2d2e_A SUFC protein; ABC-ATPas 20.6 35 0.0012 31.7 1.6 18 304-321 28-45 (250)
430 1htw_A HI0065; nucleotide-bind 20.6 27 0.00093 30.3 0.7 17 304-320 32-48 (158)
431 2qi9_C Vitamin B12 import ATP- 20.6 35 0.0012 31.9 1.6 17 304-320 25-41 (249)
432 3hn6_A Glucosamine-6-phosphate 20.5 2.4E+02 0.0082 26.9 7.6 66 349-428 24-94 (289)
433 3qks_A DNA double-strand break 20.5 33 0.0011 30.8 1.3 15 307-321 25-39 (203)
434 3qkt_A DNA double-strand break 20.5 32 0.0011 33.4 1.3 14 308-321 26-39 (339)
435 3vkg_A Dynein heavy chain, cyt 20.4 33 0.0011 43.8 1.6 23 298-320 1296-1319(3245)
436 2yz2_A Putative ABC transporte 20.3 36 0.0012 32.0 1.6 17 304-320 32-48 (266)
437 1ypw_A Transitional endoplasmi 20.2 29 0.001 38.2 1.0 18 304-321 237-254 (806)
438 3nwp_A 6-phosphogluconolactona 20.2 88 0.003 29.0 4.2 26 403-428 48-73 (233)
439 1y89_A DEVB protein; structura 20.2 1.1E+02 0.0038 28.1 5.0 44 349-393 4-48 (238)
440 2px0_A Flagellar biosynthesis 20.1 33 0.0011 32.9 1.3 18 304-321 104-121 (296)
No 1
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=2.9e-32 Score=269.48 Aligned_cols=159 Identities=23% Similarity=0.351 Sum_probs=140.7
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCC
Q 013623 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (439)
Q Consensus 264 ~~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 341 (439)
..+..+|++++|++.++++|.++||..||++|.++||.++.| +|++++||||||||+||++|+++++...
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-------- 159 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--------
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--------
Confidence 445689999999999999999999999999999999999987 9999999999999999999999987432
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh-CCCCCCC
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLIN 420 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~-~~l~L~~ 420 (439)
..++++|||+|||+||.|++++++.+..+..++.+.+++|+...... ...+++|||+|||+|++++.+ +.+.+.+
T Consensus 160 -~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred -CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 45789999999999999999999999886557889999988765433 245789999999999999966 6778999
Q ss_pred cccEEEeCCccchh
Q 013623 421 LRWYARTASLNIES 434 (439)
Q Consensus 421 Lr~LVlDEAD~fe~ 434 (439)
+++|||||||.+.+
T Consensus 236 l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 236 IKVFVLDEADVMIA 249 (300)
T ss_dssp CSEEEETTHHHHHH
T ss_pred ceEEEEeCHHHHhh
Confidence 99999999998664
No 2
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=9.9e-32 Score=255.40 Aligned_cols=163 Identities=30% Similarity=0.492 Sum_probs=148.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++||.++.|+|+++++|||||||++|++|+++.+.... ......++
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~----~~~~~~~~ 103 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP----FLERGDGP 103 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCCTTCCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc----ccccCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999986432 11234678
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||++|+.|+++.++.+... .++++.+++|+.....+...+..+++|+|+||++|.+++.++.+.+.++++|||
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 9999999999999999999999874 678999999999999888888888999999999999999999999999999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||||.+.+
T Consensus 183 DEah~l~~ 190 (242)
T 3fe2_A 183 DEADRMLD 190 (242)
T ss_dssp TTHHHHHH
T ss_pred eCHHHHhh
Confidence 99997543
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=2.4e-31 Score=274.23 Aligned_cols=162 Identities=28% Similarity=0.503 Sum_probs=148.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++++.... ......++
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~----~~~~~~~~ 130 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP----HELELGRP 130 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC----CCCCTTCC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc----cccccCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999987642 11234578
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||||||.|+++.+++++. ..++++.+++|+.....+...+..+++|+|+|||+|++++.++.+.+.++++|||
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAF-ESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTT-TSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhc-cCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 999999999999999999999987 3678999999999999898888889999999999999999999999999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 210 DEah~~~ 216 (434)
T 2db3_A 210 DEADRML 216 (434)
T ss_dssp ETHHHHT
T ss_pred ccHhhhh
Confidence 9999743
No 4
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=1.2e-30 Score=240.07 Aligned_cols=158 Identities=28% Similarity=0.464 Sum_probs=144.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
++|++++|+++++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+... ..+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---------~~~~~ 73 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK---------KDNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc---------CCCee
Confidence 579999999999999999999999999999999999999999999999999999999999887432 35689
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||++|+.|+++.++.+.....++++.+++|+.....+...+..+++|+|+||++|.+++.++...+.++++||+|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 99999999999999999999987533788999999999888888888889999999999999999988899999999999
Q ss_pred CCccchh
Q 013623 428 ASLNIES 434 (439)
Q Consensus 428 EAD~fe~ 434 (439)
|||.+.+
T Consensus 154 Eah~~~~ 160 (206)
T 1vec_A 154 EADKLLS 160 (206)
T ss_dssp THHHHTS
T ss_pred ChHHhHh
Confidence 9996543
No 5
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=246.32 Aligned_cols=162 Identities=30% Similarity=0.543 Sum_probs=137.4
Q ss_pred cccccc-cCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 267 RKSFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 267 ~~sF~e-lgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
..+|++ +++++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|++..+..... ......+
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~---~~~~~~~ 94 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI---SREQRNG 94 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------CC
T ss_pred hhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc---hhhccCC
Confidence 357999 799999999999999999999999999999999999999999999999999999998865321 1222467
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
+++|||+||++|+.|+++.++.+.. .++++.+++|+.....+...+..+++|+|+||++|.+++.++.+.+.++++||
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 8999999999999999999999874 57899999999988888778888899999999999999999999999999999
Q ss_pred EeCCccch
Q 013623 426 RTASLNIE 433 (439)
Q Consensus 426 lDEAD~fe 433 (439)
+||||.+.
T Consensus 173 iDEah~~~ 180 (228)
T 3iuy_A 173 IDEADKML 180 (228)
T ss_dssp ECCHHHHH
T ss_pred EECHHHHh
Confidence 99999754
No 6
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=5.4e-31 Score=251.20 Aligned_cols=166 Identities=33% Similarity=0.521 Sum_probs=146.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+..............++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999986542111111224568
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||++|+.|+++.++.+... .++++..++|+.....+...+..+++|+|+||++|.+++.++.+.+..+++||+
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 9999999999999999999999873 678899999999988888888889999999999999999999889999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 181 DEah~~~ 187 (253)
T 1wrb_A 181 DEADRML 187 (253)
T ss_dssp ETHHHHH
T ss_pred eCHHHHH
Confidence 9999754
No 7
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=4.3e-30 Score=242.28 Aligned_cols=157 Identities=27% Similarity=0.337 Sum_probs=141.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+... ..++
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------~~~~ 93 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------NLST 93 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999887432 3468
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||++|+.|+++.++.+.....++++.+++|+.....+...+. +++|+|+||++|.++++.+.+.+.++++||+
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 999999999999999999999986434789999999998877766654 6999999999999999998888999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 173 DEah~~~ 179 (230)
T 2oxc_A 173 DEADKLL 179 (230)
T ss_dssp SSHHHHH
T ss_pred CCchHhh
Confidence 9999764
No 8
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=1.4e-30 Score=243.25 Aligned_cols=159 Identities=28% Similarity=0.471 Sum_probs=141.9
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+... ..++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~ 73 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---------RAEV 73 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---------SCSC
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---------cCCc
Confidence 3679999999999999999999999999999999999999999999999999999999999887432 3468
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCC---CceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGV---PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~---~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
++|||+||++|+.|+++.++++..... ++++.+++|+.....+...+..+++|+|+||++|.+++.++.+.+..+++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~ 153 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHI 153 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceE
Confidence 999999999999999999999986311 68888999998777666666678999999999999999998889999999
Q ss_pred EEEeCCccchh
Q 013623 424 YARTASLNIES 434 (439)
Q Consensus 424 LVlDEAD~fe~ 434 (439)
||+||||.+.+
T Consensus 154 lViDEah~~~~ 164 (219)
T 1q0u_A 154 LVVDEADLMLD 164 (219)
T ss_dssp EEECSHHHHHH
T ss_pred EEEcCchHHhh
Confidence 99999997653
No 9
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=244.01 Aligned_cols=159 Identities=29% Similarity=0.470 Sum_probs=144.4
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
...+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+... ..+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------~~~ 111 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET---------PQR 111 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---------CCS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC---------CCC
Confidence 35789999999999999999999999999999999999999999999999999999999999988653 246
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh-CCCCCCCcccE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRWY 424 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~-~~l~L~~Lr~L 424 (439)
+++|||+||++|+.|+++.++.+... .++++.+++|+.....+...+..+++|+|+||++|.+++.+ +.+.+..+++|
T Consensus 112 ~~~lil~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 112 LFALVLTPTRELAFQISEQFEALGSS-IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHGG-GTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcc-CCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 78999999999999999999999873 57899999999988888777888899999999999999987 56788999999
Q ss_pred EEeCCccchh
Q 013623 425 ARTASLNIES 434 (439)
Q Consensus 425 VlDEAD~fe~ 434 (439)
|+||||.+.+
T Consensus 191 ViDEah~l~~ 200 (249)
T 3ber_A 191 VMDEADRILN 200 (249)
T ss_dssp EECSHHHHHH
T ss_pred EEcChhhhhc
Confidence 9999996543
No 10
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.96 E-value=6.1e-30 Score=242.61 Aligned_cols=157 Identities=24% Similarity=0.413 Sum_probs=132.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+... ..++
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---------~~~~ 99 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---------FKET 99 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------SCSC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999887432 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCC-CcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g-~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
++|||+||++|+.|+++.++.++.. .++.+..++|+.....+...+..+ ++|+|+||++|.+++.++.+.+..+++||
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDY-MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhh-cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 9999999999999999999999863 578888999998877777777655 99999999999999999888999999999
Q ss_pred EeCCccch
Q 013623 426 RTASLNIE 433 (439)
Q Consensus 426 lDEAD~fe 433 (439)
+||||.+.
T Consensus 179 iDEah~~~ 186 (237)
T 3bor_A 179 LDEADEML 186 (237)
T ss_dssp EESHHHHH
T ss_pred ECCchHhh
Confidence 99999754
No 11
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=244.48 Aligned_cols=162 Identities=26% Similarity=0.432 Sum_probs=140.9
Q ss_pred cccccccC--CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCC
Q 013623 267 RKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (439)
Q Consensus 267 ~~sF~elg--L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~ 344 (439)
..+|++++ +++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+.... .....
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~ 125 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR-----FMPRN 125 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTT-----CCGGG
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcc-----ccccC
Confidence 46788887 999999999999999999999999999999999999999999999999999999987632 11234
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-CCCCCCccc
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRW 423 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~ 423 (439)
++++|||+||++||.|+++.+++++.. .++.+.+++|+.....+...+..+++|+|+||++|.+++... .+.+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh-cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 788999999999999999999999873 678899999999988888888778999999999999999875 478899999
Q ss_pred EEEeCCccchh
Q 013623 424 YARTASLNIES 434 (439)
Q Consensus 424 LVlDEAD~fe~ 434 (439)
|||||||.+.+
T Consensus 205 lViDEah~l~~ 215 (262)
T 3ly5_A 205 LVIDEADRILD 215 (262)
T ss_dssp EEECSHHHHHH
T ss_pred EEEcChHHHhh
Confidence 99999997543
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=251.97 Aligned_cols=166 Identities=28% Similarity=0.475 Sum_probs=146.9
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhh---------c
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ---------G 337 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~---------~ 337 (439)
..+|++++|++.++++|..+||..||++|.++||.++.|+|++++||||||||++|++|+++.+...... .
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 3579999999999999999999999999999999999999999999999999999999999998654210 0
Q ss_pred cCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCC
Q 013623 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417 (439)
Q Consensus 338 ~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~ 417 (439)
.......++++|||+||++|+.|+++.++++.. ..++++..++|+.....+...+..+++|+|+||++|.+++..+.+.
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 172 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSY-RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG 172 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHT-TSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBC
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhC-cCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcC
Confidence 001123458999999999999999999999986 3678999999999999888888889999999999999999999889
Q ss_pred CCCcccEEEeCCccch
Q 013623 418 LINLRWYARTASLNIE 433 (439)
Q Consensus 418 L~~Lr~LVlDEAD~fe 433 (439)
+..+++|||||||.+.
T Consensus 173 ~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 173 LDFCKYLVLDEADRML 188 (417)
T ss_dssp CTTCCEEEESSHHHHH
T ss_pred hhhCcEEEEEChhHhh
Confidence 9999999999999754
No 13
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=2.3e-29 Score=231.17 Aligned_cols=156 Identities=33% Similarity=0.526 Sum_probs=141.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeE
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~a 348 (439)
+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+... .....++++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~------~~~~~~~~~ 75 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS------QERGRKPRA 75 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------CCTTCCCSE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhc------cccCCCCcE
Confidence 69999999999999999999999999999999999999999999999999999999999987532 112457899
Q ss_pred EEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeC
Q 013623 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTA 428 (439)
Q Consensus 349 LILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDE 428 (439)
||++||++|+.|+++.++.+.. .+++..++|+.....+...+..+++|+|+||++|.+++.++.+.+..+++||+||
T Consensus 76 lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 76 LVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 9999999999999999999865 3788899999988777777777899999999999999999989999999999999
Q ss_pred Cccch
Q 013623 429 SLNIE 433 (439)
Q Consensus 429 AD~fe 433 (439)
||.+.
T Consensus 153 ah~~~ 157 (207)
T 2gxq_A 153 ADEML 157 (207)
T ss_dssp HHHHH
T ss_pred hhHhh
Confidence 99764
No 14
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=235.47 Aligned_cols=160 Identities=26% Similarity=0.433 Sum_probs=139.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+.... .....++
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~-----~~~~~~~ 98 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ-----WTSTDGL 98 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTT-----CCGGGCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc-----ccccCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999986532 1123578
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC-CCCCCCcccEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRWYA 425 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~LV 425 (439)
++|||+||++|+.|+++.++.+.. ..++++.+++|+.....+...+ .+++|+|+||++|.+++.+. .+.+.++++||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTT-TSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhC-CCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 999999999999999999999986 3578899999998877766665 46999999999999998875 57788999999
Q ss_pred EeCCccch
Q 013623 426 RTASLNIE 433 (439)
Q Consensus 426 lDEAD~fe 433 (439)
+||||.+.
T Consensus 177 iDEah~~~ 184 (236)
T 2pl3_A 177 LDEADRIL 184 (236)
T ss_dssp ETTHHHHH
T ss_pred EeChHHHh
Confidence 99999764
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=3.1e-29 Score=233.52 Aligned_cols=158 Identities=23% Similarity=0.395 Sum_probs=142.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~ 84 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---------TGQVS 84 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---------TTCCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc---------CCCEE
Confidence 579999999999999999999999999999999999999999999999999999999999876321 34679
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
+|||+||++|+.|+++.++++.....++++.+++|+.....+...+.. .++|+|+||++|.++++++.+.+..+++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 999999999999999999999875347899999999988777666653 5799999999999999998889999999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||||.+.+
T Consensus 165 DEah~~~~ 172 (220)
T 1t6n_A 165 DECDKMLE 172 (220)
T ss_dssp ESHHHHHS
T ss_pred cCHHHHhc
Confidence 99998754
No 16
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=3.3e-29 Score=233.66 Aligned_cols=156 Identities=24% Similarity=0.402 Sum_probs=133.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+... ..++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---------~~~~ 83 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAP 83 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------CCSC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---------CCCc
Confidence 3679999999999999999999999999999999999999999999999999999999999987432 3568
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||++|+.|+++.++.+... .++++..++|+.....+...+.. ++|+|+||++|.+++.++...+.++++||+
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 9999999999999999999998863 67889999999887777666654 999999999999999998889999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 162 DEah~~~ 168 (224)
T 1qde_A 162 DEADEML 168 (224)
T ss_dssp ETHHHHH
T ss_pred cChhHHh
Confidence 9999764
No 17
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=239.04 Aligned_cols=158 Identities=26% Similarity=0.495 Sum_probs=135.0
Q ss_pred cccccc----CCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCC
Q 013623 268 KSFKEL----GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (439)
Q Consensus 268 ~sF~el----gL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~ 343 (439)
.+|+++ +|++.++++|.++||..|+++|.++|+.+++|+|+++++|||||||++|++|+++.+... ..
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--------~~ 96 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP--------AN 96 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC--------CS
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc--------cc
Confidence 578877 899999999999999999999999999999999999999999999999999999988432 24
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHH-HHhcCCCcEEEEChHHHHHHHHhC--CCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL-ENLQEGVDVLIATPGRFMFLIKEG--ILQLIN 420 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~-~~L~~g~dILVaTPgrLldlL~~~--~l~L~~ 420 (439)
.++++|||+||++|+.|+++.++++... .++++.+++|+....... .....+++|+|+||++|.+++.+. .+.+.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc-cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 5789999999999999999999999873 677777777664333221 122457899999999999999886 578899
Q ss_pred cccEEEeCCccchh
Q 013623 421 LRWYARTASLNIES 434 (439)
Q Consensus 421 Lr~LVlDEAD~fe~ 434 (439)
+++||+||||.+.+
T Consensus 176 ~~~lViDEah~~~~ 189 (245)
T 3dkp_A 176 VEWLVVDESDKLFE 189 (245)
T ss_dssp CCEEEESSHHHHHH
T ss_pred CcEEEEeChHHhcc
Confidence 99999999998754
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.95 E-value=7.4e-28 Score=242.73 Aligned_cols=157 Identities=25% Similarity=0.420 Sum_probs=144.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+... ..++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---------~~~~ 106 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ---------VRET 106 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT---------SCSC
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc---------cCCc
Confidence 3589999999999999999999999999999999999999999999999999999999999877322 3567
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||++|+.|+++.++++... .++.+..++|+.....+...+..+++|+|+||++|.+++.++.+.+..+++|||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 9999999999999999999999873 678999999999998888888888999999999999999999899999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 186 DEah~~~ 192 (410)
T 2j0s_A 186 DEADEML 192 (410)
T ss_dssp ETHHHHT
T ss_pred ccHHHHH
Confidence 9999754
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.94 E-value=9.3e-27 Score=233.57 Aligned_cols=157 Identities=25% Similarity=0.455 Sum_probs=143.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+... ..++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---------~~~~ 90 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---------LNKI 90 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---------SCSC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc---------cCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999887432 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||++|+.|+++.++.+... .++++..++|+.....+...+..+++|+|+||++|.+++.++...+.++++||+
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 8999999999999999999999873 578999999999988887777788999999999999999988888999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 170 DEaH~~~ 176 (400)
T 1s2m_A 170 DEADKML 176 (400)
T ss_dssp ESHHHHS
T ss_pred eCchHhh
Confidence 9999654
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=245.27 Aligned_cols=159 Identities=23% Similarity=0.351 Sum_probs=137.6
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCC
Q 013623 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (439)
Q Consensus 264 ~~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~ 341 (439)
..+..+|.+++|++.++++|.++||..|+++|.++||.++.+ +|++++||||||||++|++|+++.+...
T Consensus 88 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------- 159 (479)
T 3fmp_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (479)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--------
T ss_pred ccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--------
Confidence 345679999999999999999999999999999999999987 9999999999999999999999877432
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh-CCCCCCC
Q 013623 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLIN 420 (439)
Q Consensus 342 ~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~-~~l~L~~ 420 (439)
..++++|||+||++|+.|+++.++.+..+...+.+.+..++...... ....++|+|+||++|++++.+ +.+.+.+
T Consensus 160 -~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred -CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 35679999999999999999999999886567888888887654322 234689999999999999966 5678899
Q ss_pred cccEEEeCCccchh
Q 013623 421 LRWYARTASLNIES 434 (439)
Q Consensus 421 Lr~LVlDEAD~fe~ 434 (439)
+++|||||||.+..
T Consensus 236 ~~~iViDEah~~~~ 249 (479)
T 3fmp_B 236 IKVFVLDEADVMIA 249 (479)
T ss_dssp CCEEEECCHHHHHT
T ss_pred CCEEEEECHHHHhh
Confidence 99999999997653
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.94 E-value=9.2e-27 Score=232.15 Aligned_cols=158 Identities=23% Similarity=0.395 Sum_probs=141.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+... ..+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV---------TGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC---------TTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc---------CCCee
Confidence 579999999999999999999999999999999999999999999999999999999999876332 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
+|||+||++|+.|+.+.++++.....++++.+++|+.....+...+.. .++|+|+||++|..++..+.+.+.++++||+
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 999999999999999999999875447999999999988777666643 4899999999999999998888999999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||||.+..
T Consensus 159 DEaH~~~~ 166 (391)
T 1xti_A 159 DECDKMLE 166 (391)
T ss_dssp CSHHHHTS
T ss_pred eCHHHHhh
Confidence 99998754
No 22
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.94 E-value=9.6e-27 Score=233.18 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=138.4
Q ss_pred CccccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCC
Q 013623 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSK 340 (439)
Q Consensus 263 ~~~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~ 340 (439)
+..+..+|++++|++.++++|.++||..|+++|.++|+.++.+ +|+++++|||||||++|++|+++.+...
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------- 92 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------- 92 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-------
Confidence 3455689999999999999999999999999999999999987 9999999999999999999999887432
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh-CCCCCC
Q 013623 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLI 419 (439)
Q Consensus 341 ~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~-~~l~L~ 419 (439)
..++++|||+||++|+.|+++.++.+.....++.+....++...... ....++|+|+||++|.+++.+ +.+.+.
T Consensus 93 --~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 93 --NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp --SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred --CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChh
Confidence 35679999999999999999999999875457888888887754432 234689999999999999966 567789
Q ss_pred CcccEEEeCCccchh
Q 013623 420 NLRWYARTASLNIES 434 (439)
Q Consensus 420 ~Lr~LVlDEAD~fe~ 434 (439)
++++||+||||.+..
T Consensus 168 ~~~~iViDEah~~~~ 182 (412)
T 3fht_A 168 KIKVFVLDEADVMIA 182 (412)
T ss_dssp GCCEEEEETHHHHHS
T ss_pred hCcEEEEeCHHHHhh
Confidence 999999999997654
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=230.93 Aligned_cols=156 Identities=24% Similarity=0.446 Sum_probs=142.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|+++++++.+++.|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+... ..+.+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~~~ 110 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---------LKATQ 110 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---------SCSCC
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---------CCcee
Confidence 579999999999999999999999999999999999999999999999999999999999887432 35678
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
+|||+||++|+.|+++.++.++.. .++.+..++|+.....+...+. .+++|+|+||++|++++.++.+.+..+++|||
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGG-SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhcc-cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 999999999999999999999873 6788899999998888877775 67999999999999999999999999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 190 DEah~~~ 196 (414)
T 3eiq_A 190 DEADEML 196 (414)
T ss_dssp CSHHHHH
T ss_pred ECHHHhh
Confidence 9999754
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.93 E-value=2.2e-26 Score=229.28 Aligned_cols=155 Identities=24% Similarity=0.403 Sum_probs=140.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 91 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQ 91 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------CCSCC
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc---------CCCCC
Confidence 579999999999999999999999999999999999999999999999999999999999887432 35779
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||++|+.|+++.+.++.. ..++++..++|+.....+...+. +++|+|+||++|.+++.++.+.+.++++||+|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAF-HMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTT-TSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhc-cCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 99999999999999999999876 36789999999998877665554 58999999999999999988889999999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 170 Eah~~~ 175 (394)
T 1fuu_A 170 EADEML 175 (394)
T ss_dssp THHHHH
T ss_pred ChHHhh
Confidence 999764
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.93 E-value=4.5e-26 Score=226.23 Aligned_cols=153 Identities=30% Similarity=0.501 Sum_probs=135.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
.+|++++|++.++++|.++||..|+++|.++|+.++.+ +|+++++|||+|||++|++|++..+... ..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~ 75 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---------DAS 75 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---------CCS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC---------CCC
Confidence 68999999999999999999999999999999999988 9999999999999999999999887432 356
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
+++|||+||++|+.|+++.++++... .++.+...+++..... ...+++|+|+||++|.+++.++.+.+.++++||
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKF-TKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFV 150 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcc-cCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEE
Confidence 79999999999999999999999873 5678888877654322 123689999999999999999888999999999
Q ss_pred EeCCccchh
Q 013623 426 RTASLNIES 434 (439)
Q Consensus 426 lDEAD~fe~ 434 (439)
+||||.+..
T Consensus 151 iDEah~~~~ 159 (395)
T 3pey_A 151 LDEADNMLD 159 (395)
T ss_dssp EETHHHHHH
T ss_pred EEChhhhcC
Confidence 999997764
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.3e-25 Score=220.80 Aligned_cols=154 Identities=27% Similarity=0.490 Sum_probs=139.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
.+|++++|++.++++|.++||..|+++|.++|+.++.+ +++++.+|||||||++|++|++..+.. ..++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------~~~~ 75 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNGI 75 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----------cCCC
Confidence 57999999999999999999999999999999999988 799999999999999999999987632 2467
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+|+++|+.|+++.+..+... .++.+..++|+.....+...+. .++|+|+||++|.+++..+.+.+.++++||+
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 8999999999999999999999863 6788999999998877766665 5899999999999999998888999999999
Q ss_pred eCCccch
Q 013623 427 TASLNIE 433 (439)
Q Consensus 427 DEAD~fe 433 (439)
||||.+.
T Consensus 154 DEah~~~ 160 (367)
T 1hv8_A 154 DEADEML 160 (367)
T ss_dssp ETHHHHH
T ss_pred eCchHhh
Confidence 9999764
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=3.3e-26 Score=241.46 Aligned_cols=154 Identities=20% Similarity=0.380 Sum_probs=133.0
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhHh--cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEc
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL--sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILv 352 (439)
|++.++++|.++||..|+|+|.++|+.++ .++|++++||||||||+||++|+++.+..... ....++++|||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lil~ 153 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 153 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cccCCeeEEEEc
Confidence 99999999999999999999999999999 67899999999999999999999999976531 223467999999
Q ss_pred CcHHHHHHHHHHHHhhhcCC---CCceEEEEECCCChHHHHHHh-cCCCcEEEEChHHHHHHHHhC-CCCCCCcccEEEe
Q 013623 353 PTAELASQVLSNCRSLSKCG---VPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEG-ILQLINLRWYART 427 (439)
Q Consensus 353 PTrELA~Qi~~~l~~L~k~~---~~i~v~~l~Gg~~~~~q~~~L-~~g~dILVaTPgrLldlL~~~-~l~L~~Lr~LVlD 427 (439)
||++||.|+++.++++.... ..+.+..++|+.....+...+ ..+++|||+||++|++++.+. ...+..+++||||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 99999999999999975421 346688899999888777666 347999999999999999875 4467889999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 234 Eah~l~ 239 (563)
T 3i5x_A 234 EADRLL 239 (563)
T ss_dssp THHHHT
T ss_pred CHHHHh
Confidence 999754
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=8.4e-26 Score=240.67 Aligned_cols=160 Identities=20% Similarity=0.363 Sum_probs=137.1
Q ss_pred cccccC----CCHHHHHHHHHCCCCCCCHHHHHHhhhHh--cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCC
Q 013623 269 SFKELG----CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (439)
Q Consensus 269 sF~elg----L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL--sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~ 342 (439)
+|+++. |+++++++|.++||..|+|+|.++|+.++ .|+|++++||||||||+||++|+++.+..... ..
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~ 92 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DS 92 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SS
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cc
Confidence 455554 99999999999999999999999999999 78999999999999999999999999876531 22
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhhhcC---CCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhC-CCC
Q 013623 343 SGSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG-ILQ 417 (439)
Q Consensus 343 ~~gp~aLILvPTrELA~Qi~~~l~~L~k~---~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~-~l~ 417 (439)
..++++|||+||++|+.|+++.++++... ...+.+..++|+.....+...+. .+++|||+||++|++++.+. ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 45689999999999999999999998642 13467888999998888877764 47999999999999999875 456
Q ss_pred CCCcccEEEeCCccch
Q 013623 418 LINLRWYARTASLNIE 433 (439)
Q Consensus 418 L~~Lr~LVlDEAD~fe 433 (439)
+..+++|||||||.+.
T Consensus 173 ~~~~~~lViDEah~l~ 188 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLL 188 (579)
T ss_dssp CTTCCEEEEETHHHHT
T ss_pred cccCCEEEEEChHHhh
Confidence 7889999999999754
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=2.3e-24 Score=209.77 Aligned_cols=143 Identities=24% Similarity=0.485 Sum_probs=129.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT 354 (439)
|+++|.++|.++||..|+++|.++|+.+++|+++++.+|||+|||++|++|+++. +.++|||+|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5889999999999999999999999999999999999999999999999998863 3578999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 355 rELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++|+.|+++.++++... .++++..++|+.....+...+.. ++|+|+||++|.+++..+.+.+.++++||+||||.+..
T Consensus 66 ~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRY-MDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh-cCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc
Confidence 99999999999998763 67889999999988877766654 89999999999999998888899999999999997653
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.90 E-value=4.3e-24 Score=216.72 Aligned_cols=139 Identities=14% Similarity=0.135 Sum_probs=120.4
Q ss_pred HHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH
Q 013623 278 YMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (439)
Q Consensus 278 ~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE 356 (439)
++.+.|++ +|| .|+++|.++|+.+++|+|+++++|||||||++|++|++..+ ..++++|||+||++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHH
Confidence 44555655 466 79999999999999999999999999999999999988766 24679999999999
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEECCCCh---HHHHHHhcCC-CcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 357 LA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~---~~q~~~L~~g-~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
|+.|+++.++.++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||.+
T Consensus 76 L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 76 LVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 99999999999876 67899999999988 5566666665 99999999999998875 77788999999999865
Q ss_pred h
Q 013623 433 E 433 (439)
Q Consensus 433 e 433 (439)
.
T Consensus 152 ~ 152 (414)
T 3oiy_A 152 L 152 (414)
T ss_dssp H
T ss_pred h
Confidence 3
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.88 E-value=8.7e-23 Score=222.89 Aligned_cols=150 Identities=23% Similarity=0.346 Sum_probs=133.1
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
+|++++|++.+.+.|.+.||..|+++|.++|+. ++.++|+++++|||||||++|.+|+++.+... +.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----------GGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----------CSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CCE
Confidence 699999999999999999999999999999998 88999999999999999999999999988643 469
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+||++|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++++....+.++++||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEK--IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGG--GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHh--cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 99999999999999999987765 47889999998765432 12368999999999999999877778999999999
Q ss_pred CCccchh
Q 013623 428 ASLNIES 434 (439)
Q Consensus 428 EAD~fe~ 434 (439)
|||.+.+
T Consensus 146 E~H~l~~ 152 (720)
T 2zj8_A 146 EIHLIGS 152 (720)
T ss_dssp TGGGGGC
T ss_pred CCcccCC
Confidence 9998754
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.88 E-value=1.4e-22 Score=220.62 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=133.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
..+|++++|++.+.+.|.+.||..|+++|.++|+. +++++|++++||||||||++|.+|+++.+... +
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~ 75 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----------G 75 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----------C
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----------C
Confidence 36899999999999999999999999999999999 77999999999999999999999999887532 4
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
.++||++|+++||.|+++.++.+.. .++++..++|+...... .+ ..++|+|+|||+|..+++++...+.++++||
T Consensus 76 ~~il~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 76 GKAIYVTPLRALTNEKYLTFKDWEL--IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp SEEEEECSCHHHHHHHHHHHGGGGG--GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHhhc--CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 6999999999999999999976655 47888889998765432 12 3689999999999999998777789999999
Q ss_pred EeCCccchh
Q 013623 426 RTASLNIES 434 (439)
Q Consensus 426 lDEAD~fe~ 434 (439)
|||+|.+.+
T Consensus 151 iDE~H~l~~ 159 (715)
T 2va8_A 151 LDELHYLND 159 (715)
T ss_dssp ECSGGGGGC
T ss_pred EechhhcCC
Confidence 999998764
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.87 E-value=1.4e-22 Score=210.93 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=116.9
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
++...|+++|.++|+.++.|+|+++++|||||||++|++|+++.+.... ...++++|||+||++|+.|+++.+
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999999999885431 123788999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC-CCCCcccEEEeCCccchh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRWYARTASLNIES 434 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l-~L~~Lr~LVlDEAD~fe~ 434 (439)
++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+..+++|||||||.+.+
T Consensus 76 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~ 144 (556)
T 4a2p_A 76 KHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 144 (556)
T ss_dssp HHHHGG-GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCST
T ss_pred HHHhcc-cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCC
Confidence 999873 57899999999877766666666799999999999999999888 899999999999998764
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.87 E-value=1.5e-22 Score=218.49 Aligned_cols=147 Identities=20% Similarity=0.268 Sum_probs=123.3
Q ss_pred HHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHH
Q 013623 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (439)
Q Consensus 280 l~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~ 359 (439)
..+|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.... ...+.++|||+||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHH
Confidence 4567889999999999999999999999999999999999999999999886531 123468999999999999
Q ss_pred HHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC-CCCCcccEEEeCCccchh
Q 013623 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRWYARTASLNIES 434 (439)
Q Consensus 360 Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l-~L~~Lr~LVlDEAD~fe~ 434 (439)
|+.+.+++++. ..++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+..+++|||||||.+.+
T Consensus 76 Q~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 76 QNKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHHHHHHHHTT-TTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHHhc-cCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 99999999986 367899999999876555555555799999999999999998877 789999999999998643
No 35
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.87 E-value=2.3e-22 Score=208.65 Aligned_cols=138 Identities=20% Similarity=0.278 Sum_probs=121.7
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------CGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------cCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999886531 133778999999999999999999999
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC-CCCCcccEEEeCCccchh
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRWYARTASLNIES 434 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l-~L~~Lr~LVlDEAD~fe~ 434 (439)
+.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+..+++|||||||.+..
T Consensus 76 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 76 FER-LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp HHT-TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCST
T ss_pred hcc-CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCC
Confidence 873 58999999999977666555656799999999999999998877 789999999999998764
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.86 E-value=3.8e-22 Score=220.29 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=114.2
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.+|| +||+||..+||.++.|+ +++++||+|||++|++|++.+.+ .+++++||+||++||.|++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~ 143 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQ 143 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHH
Confidence 5899 99999999999999999 99999999999999999985432 256899999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhC------CCCCCCcccEEEeCCccch
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~------~l~L~~Lr~LVlDEAD~fe 433 (439)
+..+..+ .++++.+++||.....+.. ..+|||+|||||+| .++|+.+ .+.+..++|+||||||.+.
T Consensus 144 ~~~l~~~-lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 144 MGKIFEF-LGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HHHHHHH-TTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 9999985 6899999999988655433 35799999999999 7887754 3567899999999999864
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.86 E-value=9.9e-23 Score=221.84 Aligned_cols=149 Identities=20% Similarity=0.273 Sum_probs=128.8
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 269 SFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 269 sF~elg--L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
+|++++ |++.+.+.|.++||..|+++|.++|+.++.++|+++++|||||||++|.+|+++.+.. +.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------------CC
Confidence 689999 9999999999999999999999999999999999999999999999999999988742 46
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++||++|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+|||+|..+++++...+.++++|||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK--IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT--TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh--cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 899999999999999999976654 47889999998755432 1236899999999999999987777899999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||+|.+.+
T Consensus 145 DE~H~l~~ 152 (702)
T 2p6r_A 145 DEIHLLDS 152 (702)
T ss_dssp TTGGGGGC
T ss_pred eeeeecCC
Confidence 99998754
No 38
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=183.30 Aligned_cols=142 Identities=19% Similarity=0.223 Sum_probs=110.2
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHH-HHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ-VLS 363 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Q-i~~ 363 (439)
......|+++|.++++.++.++++++.+|||+|||++|++++++.+..... ...+.++|||+|+++|+.| +.+
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH------TTCCCCEEEEESSHHHHHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc------ccCCCcEEEEECHHHHHHHHHHH
Confidence 345668999999999999999999999999999999999999988765431 1246789999999999999 778
Q ss_pred HHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCC------CCCCCcccEEEeCCccchh
Q 013623 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI------LQLINLRWYARTASLNIES 434 (439)
Q Consensus 364 ~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~------l~L~~Lr~LVlDEAD~fe~ 434 (439)
.+..+.. .++++..++|+.....+...+...++|+|+||++|..++.... +.+..+++|||||||.+..
T Consensus 102 ~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 102 EFQPFLK--KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp THHHHHT--TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred HHHHHhc--cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 8888876 3678888888876544443444468999999999999998753 6678899999999998753
No 39
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.86 E-value=9e-22 Score=225.03 Aligned_cols=137 Identities=14% Similarity=0.139 Sum_probs=119.9
Q ss_pred HHHH-HHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHH
Q 013623 280 IESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (439)
Q Consensus 280 l~aL-~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA 358 (439)
.+.+ ..+|| .||++|.++||.++.|+|++++||||||||++|++|+++.+ ..++++|||+||++||
T Consensus 68 ~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------------~~~~~~Lil~PtreLa 134 (1104)
T 4ddu_A 68 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTLV 134 (1104)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------------TTTCCEEEEESSHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------------hcCCeEEEEechHHHH
Confidence 3344 34788 69999999999999999999999999999999999888776 2467999999999999
Q ss_pred HHHHHHHHhhhcCCCCceEEEEECCCCh---HHHHHHhcCC-CcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 359 ~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~---~~q~~~L~~g-~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
.|+++.++.++ ..++++.+++|+... ..+...+..+ ++|||+||++|++++.. +.+.++++|||||||.+.
T Consensus 135 ~Q~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 135 KQTLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVL 209 (1104)
T ss_dssp HHHHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHT
T ss_pred HHHHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccc
Confidence 99999999987 478999999999988 6677777776 99999999999998875 777899999999998654
No 40
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.9e-22 Score=212.07 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=109.4
Q ss_pred cccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
.|...++++.+++.|.+.||..|+++|.++|+.+++| +++++++|||||||++|++|+++.+... ..++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~---------~~~~ 190 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS---------VPKP 190 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT---------CCSC
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC---------CCCc
Confidence 4666788999999999999999999999999999998 9999999999999999999999887432 3467
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+|+++|+.|+++.++.++.. ..+.+...+++..... ...+++|+|+||++|.+++.++.+.+.++++|||
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTT-SSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCc-cCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 9999999999999999999999763 4566655555543222 2346899999999999999999889999999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||||.+..
T Consensus 266 DEaH~~~~ 273 (508)
T 3fho_A 266 DEADNMLD 273 (508)
T ss_dssp CCHHHHTT
T ss_pred echhhhcc
Confidence 99997754
No 41
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.85 E-value=3.3e-21 Score=207.38 Aligned_cols=144 Identities=14% Similarity=0.196 Sum_probs=120.6
Q ss_pred cccccCCCHHHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 269 SFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 269 sF~elgL~~~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.|.++++++.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++.. ..+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------------~g~ 86 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------------DGF 86 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------------SSE
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------------CCc
Confidence 35568899999999988 79999999999999999999999999999999999999999742 348
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---h---cCCCcEEEEChHHHH------HHHHhCC
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L---QEGVDVLIATPGRFM------FLIKEGI 415 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L---~~g~dILVaTPgrLl------dlL~~~~ 415 (439)
+|||+|+++|+.|+.+.+..+ ++.+..+.|+.....+... + ...++|||+||++|. +.+. +.
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~ 160 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KA 160 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hh
Confidence 999999999999999999886 4678888888877654322 2 356999999999874 2333 34
Q ss_pred CCCCCcccEEEeCCccch
Q 013623 416 LQLINLRWYARTASLNIE 433 (439)
Q Consensus 416 l~L~~Lr~LVlDEAD~fe 433 (439)
..+..+.+|||||||.+.
T Consensus 161 ~~~~~i~~iViDEAH~is 178 (591)
T 2v1x_A 161 YEARRFTRIAVDEVHCCS 178 (591)
T ss_dssp HHTTCEEEEEEETGGGGS
T ss_pred hhccCCcEEEEECccccc
Confidence 567789999999999854
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.85 E-value=2e-21 Score=214.72 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=118.2
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
-+|+..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+.... ...++++|||+||++|+.|+++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~Lvl~Pt~~L~~Q~~~~ 315 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNV 315 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------ccCCCeEEEEeCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999886531 13377899999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC-CCCCcccEEEeCCccchh
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRWYARTASLNIES 434 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l-~L~~Lr~LVlDEAD~fe~ 434 (439)
+++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+..+++|||||||.+..
T Consensus 316 ~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~ 385 (797)
T 4a2q_A 316 FKHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (797)
T ss_dssp HHHHHGG-GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCST
T ss_pred HHHhccc-CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCC
Confidence 9999873 57899999999977766666667899999999999999998877 789999999999998764
No 43
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.84 E-value=8.2e-22 Score=217.36 Aligned_cols=130 Identities=17% Similarity=0.146 Sum_probs=113.2
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+|. +|+++|..++|.++.|+ ++.++||||||++|++|++.... .+++++||+||++||.|++.++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHH
Confidence 564 89999999999999998 99999999999999999996542 2568999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCC------CCCCCcccEEEeCCccch
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRWYARTASLNIE 433 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~------l~L~~Lr~LVlDEAD~fe 433 (439)
..+.++ .++++.+++||..... ..+..++||+|||||+| .++|+.+. +.+..++++||||||.+-
T Consensus 136 ~~l~~~-lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 136 RPLFEF-LGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HHHHHH-TTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred HHHHHh-cCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 999985 7899999999988643 34445799999999999 89998763 567899999999999654
No 44
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.84 E-value=1.7e-21 Score=206.27 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=121.7
Q ss_pred ccccccCCCHHHHHHHHH-CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 268 KSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~-~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
..|++++|++.+.+.|++ +||..|+++|.++|+.+++|+|+++++|||+|||+||++|++.. ..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~g 66 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------NG 66 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------SS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------CC
Confidence 369999999999999988 89999999999999999999999999999999999999998832 24
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHH---Hh-cCCCcEEEEChHHHHHHHHhCCCCCCCcc
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLIKEGILQLINLR 422 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~---~L-~~g~dILVaTPgrLldlL~~~~l~L~~Lr 422 (439)
++|||+|+++|+.|+.+.++.+ ++.+..+.++.....+.. .+ ...++|+|+||++|........+...++.
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CEEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 7899999999999999998865 467888888877655432 22 34589999999999643222334457899
Q ss_pred cEEEeCCccch
Q 013623 423 WYARTASLNIE 433 (439)
Q Consensus 423 ~LVlDEAD~fe 433 (439)
+|||||||.+.
T Consensus 142 ~vViDEaH~i~ 152 (523)
T 1oyw_A 142 LLAVDEAHCIS 152 (523)
T ss_dssp EEEESSGGGGC
T ss_pred EEEEeCccccC
Confidence 99999999875
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.83 E-value=3.5e-21 Score=219.37 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=116.4
Q ss_pred HHHH-HHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHH
Q 013623 280 IESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (439)
Q Consensus 280 l~aL-~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA 358 (439)
.+.+ ..+||. | ++|.++||.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa 112 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLV 112 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHH
Confidence 3445 348999 9 9999999999999999999999999998 99999988743 367999999999999
Q ss_pred HHHHHHHHhhhcCCCCc----eEEEEECCCChHHH---HHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCcc
Q 013623 359 SQVLSNCRSLSKCGVPF----RSMVVTGGFRQKTQ---LENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLN 431 (439)
Q Consensus 359 ~Qi~~~l~~L~k~~~~i----~v~~l~Gg~~~~~q---~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~ 431 (439)
.|+++.++.++.. .++ ++.+++|+.....+ ...+.. ++|+|+||++|++++.+ |.++++|||||||.
T Consensus 113 ~Q~~~~l~~l~~~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~ 186 (1054)
T 1gku_B 113 IQAAETIRKYAEK-AGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDA 186 (1054)
T ss_dssp HHHHHHHHHHHTT-TCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHH
T ss_pred HHHHHHHHHHHhh-cCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhh
Confidence 9999999999874 567 89999999987663 445556 99999999999998765 67899999999998
Q ss_pred chh
Q 013623 432 IES 434 (439)
Q Consensus 432 fe~ 434 (439)
+.+
T Consensus 187 ~l~ 189 (1054)
T 1gku_B 187 ILK 189 (1054)
T ss_dssp HHT
T ss_pred hhh
Confidence 654
No 46
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.5e-21 Score=223.28 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=125.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
..|..+++++.+...+...++..|+++|.++|+.++.|+|++++|+||||||++|++|++..+. .+.+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------------~g~r 229 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQR 229 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------------TTCE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------------cCCe
Confidence 3677788888877777777788899999999999999999999999999999999999999873 3569
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+||++||++|+.|+++.+..++. .+.+++|+.. +..+++|+|+|||+|.+++.++...+.++++||||
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 99999999999999999998864 4777888876 33568999999999999999988888999999999
Q ss_pred CCccchh
Q 013623 428 ASLNIES 434 (439)
Q Consensus 428 EAD~fe~ 434 (439)
|||.+.+
T Consensus 298 EaH~l~d 304 (1108)
T 3l9o_A 298 EVHYMRD 304 (1108)
T ss_dssp TGGGTTS
T ss_pred hhhhccc
Confidence 9998754
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.82 E-value=1.8e-20 Score=207.29 Aligned_cols=131 Identities=17% Similarity=0.191 Sum_probs=114.1
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.+|+ +|++||..++|.++.|+ +++++||+|||++|++|++...+ .+.+++||+||++||.|++++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL------------~g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL------------AGNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT------------TTSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH------------hCCCeEEEeCCHHHHHHHHHH
Confidence 4798 99999999999999998 99999999999999999976543 245799999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhC------CCCCCCcccEEEeCCccch
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~------~l~L~~Lr~LVlDEAD~fe 433 (439)
+..+..+ .++++.+++||.....+ .+..+|||+||||++| .++|+.+ .+.+..+.|+||||||.+-
T Consensus 172 m~~l~~~-lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 172 MGRVHRF-LGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp HHHHHHH-TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 9999986 78999999999876543 3344799999999999 8998875 3667889999999999765
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=4.8e-20 Score=218.25 Aligned_cols=148 Identities=21% Similarity=0.276 Sum_probs=124.1
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEc
Q 013623 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (439)
Q Consensus 274 gL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILv 352 (439)
.|.+...++|...+|..++|+|.++|+.++ .++|++++||||||||++|.+|+++.+.+. .+.++|||+
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----------~~~kavyi~ 979 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----------SEGRCVYIT 979 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----------TTCCEEEEC
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----------CCCEEEEEc
Confidence 356778889988899999999999999998 467899999999999999999999998753 356899999
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCC--CCCCCcccEEEeCCc
Q 013623 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRWYARTASL 430 (439)
Q Consensus 353 PTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~--l~L~~Lr~LVlDEAD 430 (439)
|+++||+|+++.+++......++++..++|+....... ...++|||+|||+|..++++.. ..+.+|++||+||+|
T Consensus 980 P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 980 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred ChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 99999999999997755434688999999987654432 2358999999999988876533 347889999999999
Q ss_pred cchh
Q 013623 431 NIES 434 (439)
Q Consensus 431 ~fe~ 434 (439)
.+.+
T Consensus 1057 ~l~d 1060 (1724)
T 4f92_B 1057 LIGG 1060 (1724)
T ss_dssp GGGS
T ss_pred hcCC
Confidence 8865
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.81 E-value=2.1e-20 Score=210.55 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=116.4
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
-.|+..|+++|.++|+.++.|+|++++++||+|||++|++|+++.+... ....+.++|||+||++|+.|+++.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-------~~~~~~~vLvl~Pt~~L~~Q~~~~ 315 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNV 315 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-------CSSCCCCEEEECSSHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc-------cccCCCeEEEEeCCHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999877442 112367899999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC-CCCCcccEEEeCCccchh
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRWYARTASLNIES 434 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l-~L~~Lr~LVlDEAD~fe~ 434 (439)
+++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+..+++|||||||.+..
T Consensus 316 ~~~~~~~-~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~ 385 (936)
T 4a2w_A 316 FKHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (936)
T ss_dssp HHHHHHT-TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCST
T ss_pred HHHHhcc-cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCC
Confidence 9999873 57999999999877665555556799999999999999998877 789999999999998764
No 50
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.81 E-value=3.1e-20 Score=205.25 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=113.9
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
-+|| +||+||..+||.++.|+ +++++||+|||++|++|++.... .+.+++||+||++||.|++.+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~ 139 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEW 139 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHH
Confidence 3799 99999999999999998 99999999999999999975542 245799999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHH-HHHHHhCC------CCCC---CcccEEEeCCccch
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLI---NLRWYARTASLNIE 433 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrL-ldlL~~~~------l~L~---~Lr~LVlDEAD~fe 433 (439)
+..+..+ .++++.+++|+.....+ ....++||+||||++| +++|+.+. +.+. .+.++||||+|.+-
T Consensus 140 m~~l~~~-lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 140 MGPVYRG-LGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHHT-TTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHHh-cCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999985 78999999999885443 3345799999999999 89998874 5677 89999999999654
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.80 E-value=3.8e-20 Score=199.81 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=112.7
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH-HHHHHh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRS 367 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi-~~~l~~ 367 (439)
..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+...... ..+.++|||+|+++|+.|+ .+.++.
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA------SEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH------TCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc------CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999988765321 2346899999999999999 999999
Q ss_pred hhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHH------HhCCCCCCCcccEEEeCCccchh
Q 013623 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI------KEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 368 L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL------~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++. ..+++..++|+.....+...+...++|||+||++|..++ ....+.+..+++|||||||.+..
T Consensus 80 ~~~--~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 80 FLK--KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp HHT--TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred HcC--cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 986 258999999998766555555567999999999999988 55667889999999999997643
No 52
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.79 E-value=3.7e-19 Score=196.97 Aligned_cols=138 Identities=19% Similarity=0.229 Sum_probs=115.8
Q ss_pred HHHHH-HHHCCCCCCCHHHHHHhhhHhcC------CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEE
Q 013623 278 YMIES-LKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (439)
Q Consensus 278 ~Ll~a-L~~~gf~~pTpIQ~~aIP~iLsG------rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLI 350 (439)
.+++. +..++| .||++|.++|+.++.+ +|++++++||||||++|++|+++.+.. +.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------GFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------TSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------CCeEEE
Confidence 34444 478999 8999999999999875 699999999999999999999998743 468999
Q ss_pred EcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH---HHHhcCC-CcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQEG-VDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 351 LvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q---~~~L~~g-~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
|+||++||.|+++.+.+++. ..++++.+++|+.....+ ...+..+ ++|+|+||+.|.+ .+.+.++++|||
T Consensus 423 laPtr~La~Q~~~~l~~~~~-~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESFS-KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHHT-CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EeCcHHHHHHHHHHHHHHhh-hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 99999999999999999986 367999999999877654 3444444 9999999997743 567899999999
Q ss_pred eCCccchh
Q 013623 427 TASLNIES 434 (439)
Q Consensus 427 DEAD~fe~ 434 (439)
||+|.|..
T Consensus 497 DEaHr~g~ 504 (780)
T 1gm5_A 497 DEQHRFGV 504 (780)
T ss_dssp ESCCCC--
T ss_pred cccchhhH
Confidence 99999853
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.78 E-value=1.5e-19 Score=214.17 Aligned_cols=143 Identities=13% Similarity=0.195 Sum_probs=117.1
Q ss_pred CCCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 287 NFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 287 gf~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
||++++++|++++|.++ +++|++++||||||||++|.+|+++.+...... .......+.++|||+|+++||+|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~-~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM-DGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT-TSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc-cccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 89999999999999988 688999999999999999999999999764211 1222345789999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCC--CCCCcccEEEeCCccchh
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINLRWYARTASLNIES 434 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l--~L~~Lr~LVlDEAD~fe~ 434 (439)
++.+. ..++++..++|+.....+ ....++|||+||+++..++++... .+..|++|||||+|.+.+
T Consensus 155 ~~~~~-~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d 221 (1724)
T 4f92_B 155 GKRLA-TYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD 221 (1724)
T ss_dssp HHHHT-TTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS
T ss_pred HHHHh-hCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC
Confidence 88776 378999999999865432 123589999999998666654332 368899999999998864
No 54
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=3.3e-18 Score=172.06 Aligned_cols=131 Identities=22% Similarity=0.292 Sum_probs=113.3
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|+++|.++++.++.+ ++++.++||+|||++|+++++..+.. .+.++|||+|+++|+.|..+.+.++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 6899999999999999 99999999999999999999988751 35689999999999999999999986
Q ss_pred cCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 370 k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.. ...++..++|+.......... ..++|+|+||++|...+..+.+.+.++++||+||||.+..
T Consensus 77 ~~-~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 77 NL-PPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp CS-CGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred Cc-chhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 42 345888899988776543332 3589999999999999998888899999999999998864
No 55
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=162.71 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc
Q 013623 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (439)
Q Consensus 275 L~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT 354 (439)
.++.+.+.+.......++++|.++|+.+..|++++++|+||||||++|.++++..+.... ....+++|+++|+
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------~~~~~~~l~~~p~ 118 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------RAAECNIVVTQPR 118 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-------CGGGCEEEEEESS
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-------CCCceEEEEeccc
Confidence 344444444444445678999999999999999999999999999999999988775431 1235689999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 355 rELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
++|+.|+.+.+........+..+........ .....+++|+|+|||+|++++.. .+.++++|||||||..
T Consensus 119 ~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 119 RISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHER 188 (235)
T ss_dssp HHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSC
T ss_pred hHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccC
Confidence 9999999988876654323333322221110 01124589999999999999987 4889999999999973
No 56
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.3e-18 Score=197.46 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=111.2
Q ss_pred HHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHH
Q 013623 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (439)
Q Consensus 284 ~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~ 363 (439)
..++|. |+++|.++|+.++.|+++++++|||||||++|+++++..+. .+.++||++||++|+.|+++
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHHH
Confidence 345776 99999999999999999999999999999999999998773 25799999999999999999
Q ss_pred HHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 364 ~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.+..++. .+.+++|+.... ..++|+|+||++|..++.++...+.++++|||||||.+.+
T Consensus 148 ~l~~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d 206 (1010)
T 2xgj_A 148 ELLAEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 206 (1010)
T ss_dssp HHHHHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC
T ss_pred HHHHHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc
Confidence 9998864 577788887643 3589999999999999999888899999999999998754
No 57
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.74 E-value=3.6e-18 Score=193.63 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=110.4
Q ss_pred HCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 285 ~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.++|. |+++|.++|+.++.|+|+++++|||||||++|++|++..+. .+.++||++|+++|+.|+++.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------------~g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------------NMTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------------TTCEEEEEESCGGGHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------------cCCeEEEEeCCHHHHHHHHHH
Confidence 35665 89999999999999999999999999999999999887652 357899999999999999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+.++.. ++++.+++|+.... ..++|+|+||++|..++..+...+.++.+|||||||.+.+
T Consensus 102 l~~~~~---~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d 161 (997)
T 4a4z_A 102 FKETFD---DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND 161 (997)
T ss_dssp HHTTC-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT
T ss_pred HHHHcC---CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc
Confidence 998753 57888999987532 4589999999999999998888889999999999998754
No 58
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.71 E-value=9.9e-18 Score=162.52 Aligned_cols=128 Identities=14% Similarity=0.109 Sum_probs=102.7
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..|+++|.++++.++.+++.+++++||+|||+++++++...+.. ...++|||+||++|+.|+.+.++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----------CSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----------CCCeEEEEECCHHHHHHHHHHHHHh
Confidence 37999999999999988899999999999999998888776642 1348999999999999999999998
Q ss_pred hcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 369 ~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
... ....+..++++..... ....+++|+|+||+++... ....+..+++||+||||.+..
T Consensus 181 ~~~-~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~ 239 (282)
T 1rif_A 181 RLF-SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG 239 (282)
T ss_dssp TSC-CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH
T ss_pred ccc-ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc
Confidence 652 4567777877765432 2234689999999987433 334567899999999998764
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.70 E-value=1.8e-17 Score=172.02 Aligned_cols=121 Identities=17% Similarity=0.101 Sum_probs=95.4
Q ss_pred CCCCCCHHHHHHhhhHhcCCcE-EEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 287 NFLRPSQIQAMAFPPVVEGKSC-ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 287 gf~~pTpIQ~~aIP~iLsGrDv-li~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
|+..|+|+|. +||.+++++|+ ++++|||||||++|++|++..+.. .++++|||+|||+||.|+++.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHh
Confidence 7889999985 79999999887 999999999999999999987754 2579999999999999999988
Q ss_pred HhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
..+ .+......... ....+..|.|+|++.|...+... ..+.++++|||||||.+
T Consensus 69 ~g~-------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 69 RGL-------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp TTS-------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC
T ss_pred cCc-------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC
Confidence 532 22111111100 11234679999999998888654 56889999999999986
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.69 E-value=1.6e-17 Score=173.05 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=107.8
Q ss_pred CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
...|+++|.++|+.++.+++++++++||+|||++|+++++..+.. ...++|||+||++|+.|.++.+++
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----------~~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----------YEGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----------CSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----------CCCeEEEEECcHHHHHHHHHHHHH
Confidence 348999999999999999999999999999999999998887743 234999999999999999999998
Q ss_pred hhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 368 L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+..+ .++.+..++|+.....+ +...++|+|+||+.|.. .....+.++++|||||||.+..
T Consensus 180 ~~~~-~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 180 YRLF-SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp TTSS-CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH
T ss_pred hhcC-CccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc
Confidence 8653 45788888888766554 45679999999997643 3445678899999999998763
No 61
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.69 E-value=2e-16 Score=181.69 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=117.1
Q ss_pred cCCCHHHHHHH-HHCCCCCCCHHHHHHhhhHhc----CC--cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 273 LGCSDYMIESL-KRQNFLRPSQIQAMAFPPVVE----GK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 273 lgL~~~Ll~aL-~~~gf~~pTpIQ~~aIP~iLs----Gr--Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
+.+++...+.+ ..++|. ||++|.++|+.++. |+ |++++++||+|||++|+++++..+. .+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------~g 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NH 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TT
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------------hC
Confidence 45667777777 456886 69999999999986 66 9999999999999999999887652 35
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH---HHHhcC-CCcEEEEChHHHHHHHHhCCCCCCCc
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINL 421 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q---~~~L~~-g~dILVaTPgrLldlL~~~~l~L~~L 421 (439)
.+++||+||++||.|+++.+.+++. ..++++.++++......+ +..+.. .++|+|+||+.| .+.+.+.++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l 726 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFA-NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDL 726 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHST-TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhh-cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCcccccc
Confidence 6999999999999999999998776 367888888887665543 334444 499999999765 345788999
Q ss_pred ccEEEeCCccchhh
Q 013623 422 RWYARTASLNIESH 435 (439)
Q Consensus 422 r~LVlDEAD~fe~~ 435 (439)
++|||||||.|...
T Consensus 727 ~lvIiDEaH~~g~~ 740 (1151)
T 2eyq_A 727 GLLIVDEEHRFGVR 740 (1151)
T ss_dssp EEEEEESGGGSCHH
T ss_pred ceEEEechHhcChH
Confidence 99999999998643
No 62
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.67 E-value=1.2e-16 Score=170.00 Aligned_cols=131 Identities=16% Similarity=0.126 Sum_probs=104.3
Q ss_pred CCCHHHHHHhhhH----hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~i----LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.|.|.|.+++..+ ..|+|++++||||+|||++|++|++. .++++||++||++|+.|+.+.+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------------CCCeEEEEcCCHHHHHHHHHHH
Confidence 6899999977654 47999999999999999999999997 1468999999999999999999
Q ss_pred HhhhcCCCCceEEEEECCCCh---------------------------------HHHH------------------HHhc
Q 013623 366 RSLSKCGVPFRSMVVTGGFRQ---------------------------------KTQL------------------ENLQ 394 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg~~~---------------------------------~~q~------------------~~L~ 394 (439)
..+.+. .++++.++.|...+ ..+. ....
T Consensus 68 ~~l~~~-~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREK-RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCS-SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhh-cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 998764 47888887774321 1111 2223
Q ss_pred CCCcEEEEChHHHHHHHHhCCCCC-CCcccEEEeCCccchhhhc
Q 013623 395 EGVDVLIATPGRFMFLIKEGILQL-INLRWYARTASLNIESHFS 437 (439)
Q Consensus 395 ~g~dILVaTPgrLldlL~~~~l~L-~~Lr~LVlDEAD~fe~~~~ 437 (439)
..+||||+|++.|++.+.+..+.+ ....+|||||||++++ .+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~ 189 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VN 189 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HH
Confidence 468999999999999876554443 4678899999999998 54
No 63
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.64 E-value=5.1e-17 Score=175.70 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=100.4
Q ss_pred cccc-cCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 269 SFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 269 sF~e-lgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.|.. +++++.++++|... +..|+|+|+++||.+++|+|++++||||||||++|++|+++.+.. .+++
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----------~~~~ 217 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----------RRLR 217 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCC
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCe
Confidence 3445 66777777777554 588999999999999999999999999999999999999998854 2579
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+|||+||||||.|+++.++.+ .+. ..+.. .. .....+..|.+.|.+.|...+... ..+.++++||||
T Consensus 218 vLvl~PtreLa~Qi~~~l~~~-------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViD 284 (618)
T 2whx_A 218 TLILAPTRVVAAEMEEALRGL-------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMD 284 (618)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEE
T ss_pred EEEEcChHHHHHHHHHHhcCC-------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEE
Confidence 999999999999999887632 121 11111 00 001123457778888887766554 468899999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 285 Eah~~~ 290 (618)
T 2whx_A 285 EAHFTD 290 (618)
T ss_dssp STTCCS
T ss_pred CCCCCC
Confidence 999974
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.64 E-value=8.4e-17 Score=175.10 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=92.4
Q ss_pred HHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCC
Q 013623 293 QIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372 (439)
Q Consensus 293 pIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~ 372 (439)
..|.++++.+..++|++++||||||||++|++|+++ .+.++|||+|||+||.|+++.+.+...
T Consensus 220 ~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------------~g~~vLVl~PTReLA~Qia~~l~~~~g-- 282 (666)
T 3o8b_A 220 TDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------------QGYKVLVLNPSVAATLGFGAYMSKAHG-- 282 (666)
T ss_dssp CCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------------TTCCEEEEESCHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------------CCCeEEEEcchHHHHHHHHHHHHHHhC--
Confidence 345455555558899999999999999999998875 145899999999999999988776643
Q ss_pred CCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchhhh
Q 013623 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIESHF 436 (439)
Q Consensus 373 ~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~~~ 436 (439)
..+...+|+.. +..+++|+|+|||+| +....+.+.++++|||||||++...+
T Consensus 283 --~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~ 334 (666)
T 3o8b_A 283 --IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTT 334 (666)
T ss_dssp --CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHH
T ss_pred --CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCccH
Confidence 44556677654 456799999999997 57778889999999999999887544
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.64 E-value=5.5e-16 Score=159.89 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=95.2
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|+++|.++++.++.+++++++++||+|||++|+.++... +.++|||+|+++|+.|..+.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 6999999999999999999999999999999999988753 347999999999999999999884
Q ss_pred cCCCCce-EEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 370 KCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 370 k~~~~i~-v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++. +.++.|+.. ..++|+|+||+.+...+..- ..++++|||||||.+..
T Consensus 157 ----~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp ----CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTS
T ss_pred ----CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCC
Confidence 466 777777654 24799999999998776531 24589999999998764
No 66
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.61 E-value=4.6e-18 Score=185.55 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=86.7
Q ss_pred HHHCCCC-----CCCHHHH-----HHhhhHh------cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCC
Q 013623 283 LKRQNFL-----RPSQIQA-----MAFPPVV------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (439)
Q Consensus 283 L~~~gf~-----~pTpIQ~-----~aIP~iL------sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp 346 (439)
|..+||. .||+||+ ++||.++ +|+|+++++|||||||++|++|+++.+.. .++
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-----------~~~ 271 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-----------KRL 271 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-----------TTC
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----------CCC
Confidence 3445555 8999999 9999998 89999999999999999999999998754 357
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEE
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYAR 426 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVl 426 (439)
++|||+||++||.|+++.++.+. +. ...+.... ....+--+-+.+-+.+...+.. ...+.++++|||
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~~-----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvVi 338 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGLP-----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVM 338 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTSC-----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEE
T ss_pred cEEEEccHHHHHHHHHHHHhcCC-----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEE
Confidence 99999999999999999887552 21 11110000 0001112233344444433333 257899999999
Q ss_pred eCCccc
Q 013623 427 TASLNI 432 (439)
Q Consensus 427 DEAD~f 432 (439)
||||.|
T Consensus 339 DEaH~~ 344 (673)
T 2wv9_A 339 DEAHFT 344 (673)
T ss_dssp ESTTCC
T ss_pred eCCccc
Confidence 999998
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.61 E-value=2.9e-15 Score=142.89 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=93.5
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..|+++|.+++..++.+++++++++||+|||++++.++... +.++||++|+++|+.|..+.+..+
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 37899999999999999999999999999999988776542 347899999999999999998874
Q ss_pred hcCCCCce-EEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 369 SKCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 369 ~k~~~~i~-v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++. +..+.|+.. ...+|+|+||+.+...+..- ...+++|||||||.+..
T Consensus 157 -----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 157 -----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp -----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCT
T ss_pred -----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCC
Confidence 456 667776654 25799999999987766531 24589999999998864
No 68
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.56 E-value=1.1e-14 Score=161.04 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=109.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHh-cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCC
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL-sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~g 345 (439)
..+|.++++++.+.+.|...+ ..|+++|.++|+.++ .+++++++||||||||+ ++|++.. ..... ...+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~--~~~~~-----~~~g 140 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVL--FDEMP-----HLEN 140 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHH--HHHCG-----GGGT
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHH--Hhccc-----cCCC
Confidence 468999999999999998877 789999999999988 45789999999999999 6777722 21110 1136
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
.+++|++|+|+|+.|+...+........+..+........ ......+|+|+|||++...+... ..+.++++||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 7899999999999999887655432111122211111000 11246899999999999888764 4688999999
Q ss_pred EeCCcc
Q 013623 426 RTASLN 431 (439)
Q Consensus 426 lDEAD~ 431 (439)
|||+|.
T Consensus 214 lDEah~ 219 (773)
T 2xau_A 214 LDEAHE 219 (773)
T ss_dssp ECSGGG
T ss_pred ecCccc
Confidence 999995
No 69
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.55 E-value=3.6e-15 Score=158.43 Aligned_cols=128 Identities=17% Similarity=0.148 Sum_probs=89.1
Q ss_pred CCCCCCCHHHHHHhhh----HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~----iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi 361 (439)
.|| .|+++|.+++.. +..|++++++||||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 467 899999998654 4589999999999999999999998742 36899999999999999
Q ss_pred HHHHHhhhcCCCCceEEEEECCCCh--------H---------------------------------------HHHHHhc
Q 013623 362 LSNCRSLSKCGVPFRSMVVTGGFRQ--------K---------------------------------------TQLENLQ 394 (439)
Q Consensus 362 ~~~l~~L~k~~~~i~v~~l~Gg~~~--------~---------------------------------------~q~~~L~ 394 (439)
.+.+..+ ++++.++.|.... . ...+...
T Consensus 68 ~~~~~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 68 YKNAKLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHGGG-----TCCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 9988875 2334443332210 0 0001112
Q ss_pred CCCcEEEEChHHHHHHHHhCCC-------CCCCcccEEEeCCccchh
Q 013623 395 EGVDVLIATPGRFMFLIKEGIL-------QLINLRWYARTASLNIES 434 (439)
Q Consensus 395 ~g~dILVaTPgrLldlL~~~~l-------~L~~Lr~LVlDEAD~fe~ 434 (439)
..++|||+|+..|++.+..+.+ .+....+|||||||+++.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 3579999999999986554332 245678999999999954
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.52 E-value=1e-15 Score=158.70 Aligned_cols=101 Identities=17% Similarity=0.238 Sum_probs=77.1
Q ss_pred hHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEE
Q 013623 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l 380 (439)
.+++|+|+++++|||||||++|++|+++.+.. .++++|||+||++||.|+++.++.+. +. ..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-----------~~~~~lil~Ptr~La~Q~~~~l~~~~-----v~--~~ 65 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-----------RRLRTLVLAPTRVVLSEMKEAFHGLD-----VK--FH 65 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTTTSC-----EE--EE
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCCeEEEEcchHHHHHHHHHHHhcCC-----eE--Ee
Confidence 46789999999999999999999999998754 25799999999999999999887442 21 11
Q ss_pred ECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhC--------CCCCCCcccEEEeCCccch
Q 013623 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--------ILQLINLRWYARTASLNIE 433 (439)
Q Consensus 381 ~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~--------~l~L~~Lr~LVlDEAD~fe 433 (439)
.+.. -.|+||+++++++..+ ...+.++++|||||||.+.
T Consensus 66 ~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~ 112 (440)
T 1yks_A 66 TQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLD 112 (440)
T ss_dssp SSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCS
T ss_pred cccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECccccC
Confidence 1110 0378887766544332 2358899999999999983
No 71
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.48 E-value=7.4e-14 Score=144.17 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=79.2
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECC
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg 383 (439)
+|+|+++++|||||||++|++|+++.+.. .++++|||+||++||.|+++.+. ++.+....|+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-----------~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-----------KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-----------CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecC
Confidence 47899999999999999999999977653 35799999999999999998775 2344444443
Q ss_pred CChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccch
Q 013623 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIE 433 (439)
Q Consensus 384 ~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe 433 (439)
... .-..+.-+.+.|.+.+...+.. ...+.++++|||||+|.|.
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~ 106 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD 106 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC
Confidence 221 1112455778899998777766 5678999999999999985
No 72
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.48 E-value=1e-14 Score=155.15 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=76.7
Q ss_pred CCCCHHHHHHhhhHhc----C-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHH-
Q 013623 289 LRPSQIQAMAFPPVVE----G-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL- 362 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLs----G-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~- 362 (439)
..|+++|.++|+.++. | ++++++++||||||+++ ++++..+...... ......++++|||+||++|+.|+.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~--~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWN--RTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCC--SSCSSSCCCEEEEEC----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccc--cccccCCCeEEEEeCCHHHHHHHHH
Confidence 4799999999999886 4 66999999999999995 4555555432100 011125789999999999999999
Q ss_pred HHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHh----CCCCCCCcccEEEeCCccchh
Q 013623 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE----GILQLINLRWYARTASLNIES 434 (439)
Q Consensus 363 ~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~----~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
+.++.+.. .+..+.++ ....+.+|+|+||++|...+.. ..+.+..+++|||||||.+..
T Consensus 254 ~~~~~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 254 KTFTPFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp -CCTTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHHHhcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 77765532 23333322 1345689999999999887752 345567799999999998763
No 73
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.48 E-value=6.2e-14 Score=145.85 Aligned_cols=110 Identities=20% Similarity=0.188 Sum_probs=80.1
Q ss_pred hhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEE
Q 013623 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (439)
Q Consensus 299 IP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~ 378 (439)
...+.+++++++++|||||||++|++|+++.+.. .++++|||+|||+||.|+++.+..+ . +.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~g~-----~--v~ 76 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALRGL-----P--VR 76 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTTTS-----C--EE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhcCc-----e--Ee
Confidence 4456688999999999999999999999998754 2578999999999999999988632 2 21
Q ss_pred EEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 379 ~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
...+..... -..+.-|.+.|.+.+...+... ..+.++++|||||||.+
T Consensus 77 ~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~ 124 (459)
T 2z83_A 77 YQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFT 124 (459)
T ss_dssp ECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCC
T ss_pred EEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccC
Confidence 111111100 1123457788999887766543 56889999999999985
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.44 E-value=9.4e-14 Score=157.92 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=105.1
Q ss_pred HHHHHHHHHCC-------CCCCCHHHHHHhhhHhc--------------CCcEEEEcCCCCCcceeehhHHHHHHHHHHh
Q 013623 277 DYMIESLKRQN-------FLRPSQIQAMAFPPVVE--------------GKSCILADQSGSGKTLAYLLPVIQRLRQEEL 335 (439)
Q Consensus 277 ~~Ll~aL~~~g-------f~~pTpIQ~~aIP~iLs--------------GrDvli~ApTGSGKTlaylLPiL~~l~~~~~ 335 (439)
+.++..|..+- ...|+++|..|++.++. +++.+++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555532 23599999999999875 378999999999999997 6776544221
Q ss_pred hccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhC
Q 013623 336 QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG 414 (439)
Q Consensus 336 ~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~ 414 (439)
....++|||||+++|+.|+.+.+..+... .+.++.+...+...+. .+++|+|+||++|..++...
T Consensus 328 -------~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 328 -------DFIDKVFFVVDRKDLDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp -------TTCCEEEEEECGGGCCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred -------CCCceEEEEeCcHHHHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 23469999999999999999999987642 1234455555555553 56899999999999988764
Q ss_pred C--CCCCCcccEEEeCCccch
Q 013623 415 I--LQLINLRWYARTASLNIE 433 (439)
Q Consensus 415 ~--l~L~~Lr~LVlDEAD~fe 433 (439)
. ..+....+||+||||...
T Consensus 394 ~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 394 SDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp CCCGGGGSCEEEEEESCCTTH
T ss_pred cchhccccccEEEEEccchhc
Confidence 3 245678999999999865
No 75
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.31 E-value=3.3e-12 Score=138.15 Aligned_cols=82 Identities=27% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCHHHHHHhhh----HhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~----iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.|.+.|.+++.. +..|+|+++.||||||||++|++|++..+... +.++||++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----------~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----------KLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----------TCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----------CCeEEEECCCHHHHHHHHHHH
Confidence 578999988754 45899999999999999999999999998642 468999999999999999999
Q ss_pred HhhhcCCCCceEEEEECC
Q 013623 366 RSLSKCGVPFRSMVVTGG 383 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg 383 (439)
..+... .++++.+++|+
T Consensus 72 ~~l~~~-~~~~~~~l~gr 88 (620)
T 4a15_A 72 RSLSST-MKIRAIPMQGR 88 (620)
T ss_dssp HHHHHH-SCCCEEECCCH
T ss_pred HHHhhc-cCeEEEEEECC
Confidence 998763 36777666654
No 76
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.23 E-value=7.2e-12 Score=136.88 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=88.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCe
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~ 347 (439)
.+|..+. ..+.++++.++.+ | .|.+.....+.|++++++||||||||+ ++++.+... ..
T Consensus 123 ~~fp~~e-~~d~l~~i~dl~~--p--~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~------------~~ 181 (677)
T 3rc3_A 123 QIFPVLD-CKDDLRKISDLRI--P--PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA------------KS 181 (677)
T ss_dssp HHCGGGG-CHHHHHHHTBCCC--G--GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS------------SS
T ss_pred hhCCCcC-CHHHHHHHhhccC--h--hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc------------CC
Confidence 3454444 5556666655443 3 333444456799999999999999997 666666442 24
Q ss_pred EEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 348 aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+||++|||+||.|+++.+..+ ++++.+++|+..... ..-....+++++|++.+. .+..+++||||
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVID 246 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVID 246 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEEC
T ss_pred eEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEe
Confidence 599999999999999998875 467888888765410 000112567777775431 24668999999
Q ss_pred CCccch
Q 013623 428 ASLNIE 433 (439)
Q Consensus 428 EAD~fe 433 (439)
|||.+.
T Consensus 247 EaH~l~ 252 (677)
T 3rc3_A 247 EIQMIR 252 (677)
T ss_dssp SGGGGG
T ss_pred cceecC
Confidence 999874
No 77
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.22 E-value=9.7e-12 Score=129.05 Aligned_cols=124 Identities=18% Similarity=0.211 Sum_probs=91.1
Q ss_pred CCCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..|+|+|.++++.++ .+++++++.+||+|||+.++. ++..+... ....++|||||+ .|+.|..+.
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~---------~~~~~~LIv~P~-~l~~qw~~e 104 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE---------NELTPSLVICPL-SVLKNWEEE 104 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT---------TCCSSEEEEECS-TTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc---------CCCCCEEEEccH-HHHHHHHHH
Confidence 469999999998763 578999999999999999644 44444322 234579999995 688999999
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
++++.. .+++.++.|+... .....++|+|+|+++|..... +.....++||+||||.+..
T Consensus 105 ~~~~~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn 163 (500)
T 1z63_A 105 LSKFAP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKN 163 (500)
T ss_dssp HHHHCT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSC
T ss_pred HHHHCC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCC
Confidence 888753 4667666665522 112358999999999876543 3334579999999999853
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.02 E-value=1.4e-10 Score=131.24 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=90.2
Q ss_pred CCCCHHHHHHhhhHhc--CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLs--GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~ 366 (439)
..|+|+|.+++..++. +.+++++.+||+|||+.++..+...+... ...++|||||+ .|+.|....+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g----------~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG----------AAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS----------SCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC----------CCCeEEEEeCH-HHHHHHHHHHH
Confidence 4689999999998886 45899999999999999877766655321 23479999999 99999888886
Q ss_pred hhhcCCCCceEEEEECCCChHHHHHHh---cCCCcEEEEChHHHHHHHHh-CCCCCCCcccEEEeCCccch
Q 013623 367 SLSKCGVPFRSMVVTGGFRQKTQLENL---QEGVDVLIATPGRFMFLIKE-GILQLINLRWYARTASLNIE 433 (439)
Q Consensus 367 ~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~~g~dILVaTPgrLldlL~~-~~l~L~~Lr~LVlDEAD~fe 433 (439)
+.+ ++.+.++.|+... ...... ....+|+|+|++.|...... ..+....+.+|||||||.+.
T Consensus 221 ~~f----~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~k 286 (968)
T 3dmq_A 221 RRF----NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLV 286 (968)
T ss_dssp HHS----CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCC
T ss_pred HHh----CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhc
Confidence 653 3455555443322 211111 13479999999987532111 11334568999999999985
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.2e-09 Score=118.94 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=94.1
Q ss_pred CCCCHHHHHHhhhHh----cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iL----sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
..+.|+|.+++..++ .+++.|++.++|.|||+..+..+...+... .....+||||| ..|+.|-.+.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~---------~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR---------RQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH---------SCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc---------CCCCCEEEEEC-chHHHHHHHH
Confidence 368899999998665 789999999999999998765555444332 12345799999 6777888888
Q ss_pred HHhhhcCCCCceEEEEECCCChHHHHHHh------------cCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENL------------QEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 365 l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L------------~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
+.+++ .++++.+..|+......+... ...++|+|+|++.+...... +.-....+|||||||.+
T Consensus 305 ~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 305 FEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 87775 467787778776555443321 23588999999998664332 22234789999999998
Q ss_pred h
Q 013623 433 E 433 (439)
Q Consensus 433 e 433 (439)
-
T Consensus 380 k 380 (800)
T 3mwy_W 380 K 380 (800)
T ss_dssp C
T ss_pred c
Confidence 4
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.87 E-value=5.1e-09 Score=114.65 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=101.6
Q ss_pred CCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 286 ~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
+|+ +|..+|....-.+..|+ +....||+|||+++.+|++-+.+ .|..+.|++||++||.|-+.++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhHHHHH
Confidence 454 69999999998888888 89999999999999999886553 2557999999999999999999
Q ss_pred HhhhcCCCCceEEEEECC--------------------------------------------------CChHHHHHHhcC
Q 013623 366 RSLSKCGVPFRSMVVTGG--------------------------------------------------FRQKTQLENLQE 395 (439)
Q Consensus 366 ~~L~k~~~~i~v~~l~Gg--------------------------------------------------~~~~~q~~~L~~ 395 (439)
..+..+ .++++.+++.. ........ ..
T Consensus 137 ~~l~~~-Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY 213 (822)
T 3jux_A 137 GPVYLF-LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AY 213 (822)
T ss_dssp HHHHHH-TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HH
T ss_pred HHHHHH-hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--Hh
Confidence 999986 78999999872 11111111 23
Q ss_pred CCcEEEEChHHH-HHHHHhCCC------CCCCcccEEEeCCccch
Q 013623 396 GVDVLIATPGRF-MFLIKEGIL------QLINLRWYARTASLNIE 433 (439)
Q Consensus 396 g~dILVaTPgrL-ldlL~~~~l------~L~~Lr~LVlDEAD~fe 433 (439)
.|||..+|..-| .|+|+-+.. -...+.|.||||+|.+.
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 489999999877 567765421 23558999999999654
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.87 E-value=7.5e-09 Score=112.07 Aligned_cols=134 Identities=17% Similarity=0.244 Sum_probs=92.6
Q ss_pred CCCHHHHHHhhhHh---------cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHH
Q 013623 290 RPSQIQAMAFPPVV---------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL---------sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Q 360 (439)
.+.|+|.+++..++ .++..|+..+||+|||+..+..+...+.... .......++|||||+ .|+.|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-----~~~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-----DCKPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-----TSSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-----cccCCCCcEEEEecH-HHHHH
Confidence 58899999998764 4567999999999999987666655543221 111123468999997 78888
Q ss_pred HHHHHHhhhcCCCCceEEEEECCCChHH--HHHHh-c-----CCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccc
Q 013623 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKT--QLENL-Q-----EGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNI 432 (439)
Q Consensus 361 i~~~l~~L~k~~~~i~v~~l~Gg~~~~~--q~~~L-~-----~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~f 432 (439)
-.+.+.++.. ..+.+..++++..... .+... . ...+|+|+|++.+.... ..+.-....+||+||||.+
T Consensus 129 W~~E~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 129 WYNEVGKWLG--GRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHG--GGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHcC--CCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 8888888865 2466677777654322 12221 1 14789999999886543 3344456789999999988
Q ss_pred h
Q 013623 433 E 433 (439)
Q Consensus 433 e 433 (439)
-
T Consensus 205 k 205 (644)
T 1z3i_X 205 K 205 (644)
T ss_dssp C
T ss_pred C
Confidence 5
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.56 E-value=3.8e-08 Score=106.09 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=76.6
Q ss_pred CHHHHHHhhhHhcCCcEEEEcCCCCCcc--eeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 292 SQIQAMAFPPVVEGKSCILADQSGSGKT--LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 292 TpIQ~~aIP~iLsGrDvli~ApTGSGKT--laylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
++.|..+++.++.++++++.+++||||| ++++++++..+.. ..+.++++++||.++|.++.+.+..+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~----------~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----------GERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS----------SCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh----------cCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 7787777765411 235789999999999999998887654
Q ss_pred cCCCCceEEEEECCCChHHHHHHhcCCCcEEE-EChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLI-ATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 370 k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILV-aTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
.. .++..... ..... + ....|-++ .+|+.. . +.........+++||||||+++..
T Consensus 221 ~~-l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~~ 276 (608)
T 1w36_D 221 RQ-LPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMIDL 276 (608)
T ss_dssp HH-SSCCSCCC-CSCSC--C----CBTTTSCC-------------CTTSCCSCSEEEECSGGGCBH
T ss_pred hc-CCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCCH
Confidence 42 22211000 00000 0 01122222 334321 1 222222333689999999998764
No 83
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.49 E-value=0.00034 Score=75.36 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 288 f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
+..+++-|..|+..++...-++|++|+|||||... ..++..+.. ..+.++|+++||...+.++...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT----------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 34678999999999998888999999999999753 233333322 1356899999999999999888765
Q ss_pred h
Q 013623 368 L 368 (439)
Q Consensus 368 L 368 (439)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 4
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.49 E-value=7.5e-05 Score=80.63 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCCHHHHHHhhhHhcCCc-EEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrD-vli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
.+++-|.+|+-.++..++ .||++|+|||||..-+- ++..+.. .+.++|+++||..-|.++...+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~-----------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK-----------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH-----------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh-----------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 467889999999997776 68999999999976332 3333322 2468999999999999988777543
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.41 E-value=0.00015 Score=75.03 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=50.7
Q ss_pred HHCCCCCCCHHHHHHhhhHhcC-----CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHH
Q 013623 284 KRQNFLRPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (439)
Q Consensus 284 ~~~gf~~pTpIQ~~aIP~iLsG-----rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA 358 (439)
.-+.|..+++-|.+++..++.. ..+++.|+.|||||.. +..++..+... ....+++++||...|
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~----------~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALIST----------GETGIILAAPTHAAK 87 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHT----------TCCCEEEEESSHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhc----------CCceEEEecCcHHHH
Confidence 4466888999999999887632 3899999999999943 23444444332 113689999999998
Q ss_pred HHHHHHH
Q 013623 359 SQVLSNC 365 (439)
Q Consensus 359 ~Qi~~~l 365 (439)
..+...+
T Consensus 88 ~~l~~~~ 94 (459)
T 3upu_A 88 KILSKLS 94 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 8776554
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00052 Score=76.30 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=54.1
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++-|.+|+..++.+.-++|.||.|||||... ..++..+... .+.++|+++||...|.++.+.+..+
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~----------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI----------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH----------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC----------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999998778999999999999753 3344444332 2458999999999999999888764
No 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.27 E-value=0.00038 Score=74.51 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=49.9
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.+++-|..++..++.++.+++.++.|||||.. +..++..+.. .+.++++++||...+.++.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-----------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-----------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-----------cCCeEEEecCcHHHHHHhHhhh
Confidence 57899999999999999999999999999954 2233333322 2467899999999998876644
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.22 E-value=0.00077 Score=74.92 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=53.6
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++-|.+|+-.++.+.-++|.+|+|||||... ..++..+... .+.++|+++||...|.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~----------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT----------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc----------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3568899999999998888999999999999753 3344443321 3458999999999999998887654
No 89
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.32 E-value=0.0044 Score=67.36 Aligned_cols=68 Identities=32% Similarity=0.424 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHhhhHhc----C-CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHH
Q 013623 287 NFLRPSQIQAMAFPPVVE----G-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (439)
Q Consensus 287 gf~~pTpIQ~~aIP~iLs----G-rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi 361 (439)
+| .|++.|.++|..+.. | +..++.+.||||||+.+.- ++..+ +..+|||+|+..+|.|+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~--------------~~~~lvv~~~~~~A~ql 69 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL--------------GRPALVLAPNKILAAQL 69 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------------TCCEEEEESSHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--------------CCCEEEEecCHHHHHHH
Confidence 56 899999999987653 3 3577889999999865421 22222 11379999999999999
Q ss_pred HHHHHhhhc
Q 013623 362 LSNCRSLSK 370 (439)
Q Consensus 362 ~~~l~~L~k 370 (439)
++.++.+..
T Consensus 70 ~~el~~~~~ 78 (664)
T 1c4o_A 70 AAEFRELFP 78 (664)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHCC
Confidence 999999963
No 90
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.29 E-value=0.014 Score=62.09 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=53.2
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++-|.+++.. ....++|.|+.|||||.+.+-=+.+.+.... ...-++|+|++|+..+.++.+.+..+
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~--------~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN--------CSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC--------CChhhEEEEeccHHHHHHHHHHHHHH
Confidence 5689999999973 3567999999999999765444444332211 12237899999999999999998877
Q ss_pred hc
Q 013623 369 SK 370 (439)
Q Consensus 369 ~k 370 (439)
..
T Consensus 78 ~~ 79 (647)
T 3lfu_A 78 MG 79 (647)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 91
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.86 E-value=0.095 Score=55.88 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=77.5
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.|+|.|...+-.+-..+-+++..+-++|||.+...-++..+.. ..+..+++++|+++.|..++..++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 5899999988776556789999999999998765555444432 135689999999999999998888776
Q ss_pred cCCCC-ceEEEE-ECCCChHHHHHHhcCCCcEEEE--ChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 370 KCGVP-FRSMVV-TGGFRQKTQLENLQEGVDVLIA--TPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 370 k~~~~-i~v~~l-~Gg~~~~~q~~~L~~g~dILVa--TPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
..... ++.... ..... ..+.+|..|.+. .|+.+ +.. ...++|+||++.+..
T Consensus 233 ~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----rG~-----~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----RGN-----SFAMIYIEDCAFIPN 287 (592)
T ss_dssp TTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH----HHS-----CCSEEEEETGGGCTT
T ss_pred HhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc----cCC-----CcceEEEehhccCCc
Confidence 53211 111111 11110 012345544433 34443 221 267899999987754
No 92
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.14 E-value=0.047 Score=58.80 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=53.3
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.+++-|.+++-.. +..++|.|..|||||.+.+-=+...+.... ....++|+|+.|+..|.++.+.+..+.
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHC--------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 4789999998753 678999999999999865444444443321 123468999999999999999888765
Q ss_pred c
Q 013623 370 K 370 (439)
Q Consensus 370 k 370 (439)
.
T Consensus 72 ~ 72 (673)
T 1uaa_A 72 G 72 (673)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.12 E-value=0.09 Score=57.40 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=52.3
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+++-|.+++-. ....++|.|..|||||.+.+-=+.+.+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~--------~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH--------VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999865 3568999999999999765444444443211 12246899999999999988887776
Q ss_pred h
Q 013623 369 S 369 (439)
Q Consensus 369 ~ 369 (439)
.
T Consensus 80 l 80 (724)
T 1pjr_A 80 L 80 (724)
T ss_dssp H
T ss_pred h
Confidence 4
No 94
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.79 E-value=0.1 Score=54.32 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=31.5
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHh
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~ 367 (439)
=.++.|+.|+|||... .+.+.. -..+||+||++++..+.+.+.+
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~~~-------------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRVNF-------------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHCCT-------------TTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHH----HHHhcc-------------CCeEEEeCCHHHHHHHHHHhhh
Confidence 4689999999999643 222110 1349999999999888877754
No 95
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.28 E-value=0.49 Score=46.84 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.++++.+|+|+|||++
T Consensus 44 ~~~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL 61 (318)
T ss_dssp CCCEEEEECCCSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999964
No 96
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.10 E-value=0.11 Score=60.25 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 289 ~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..+|+-|.++|-.- +++++|.|.-|||||.+.+-=++..+.... .....-+.|+|++|+..|.++.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 35799999998654 889999999999999765544555443210 0112337899999999999998888764
Q ss_pred h
Q 013623 369 S 369 (439)
Q Consensus 369 ~ 369 (439)
.
T Consensus 81 l 81 (1232)
T 3u4q_A 81 L 81 (1232)
T ss_dssp H
T ss_pred H
Confidence 3
No 97
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.69 E-value=1.3 Score=38.33 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|+++.-+..+...+... ++.+..++|+.+...+...+ . ....|||+|. .+ ...+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhc
Confidence 457999999999999999888764 56788899998766554333 2 3588999993 23 34677888
Q ss_pred cccEEEeCC
Q 013623 421 LRWYARTAS 429 (439)
Q Consensus 421 Lr~LVlDEA 429 (439)
++++|.-+.
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888886544
No 98
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.65 E-value=1.7 Score=37.94 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=24.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcce
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTl 320 (439)
..|.++--.+..++.|.+. ++. -...++++.+++|+|||.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-------l~~------~~~~~~ll~G~~G~GKT~ 53 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGY-------VER------KNIPHLLFSGPPGTGKTA 53 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHH-------HHT------TCCCCEEEECSTTSSHHH
T ss_pred CCHHHHcCcHHHHHHHHHH-------HhC------CCCCeEEEECCCCCCHHH
Confidence 4567765566666655331 000 023469999999999995
No 99
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.01 E-value=1.3 Score=39.78 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|++++-+..+...++.. ++.+..+.|+.+...+...+ + ..+.|||+| +.+. ..+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCccc
Confidence 357999999999999999888765 46788899998776554333 2 458999999 3343 4567788
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
++++|.=+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88877644
No 100
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.88 E-value=1.3 Score=42.64 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=27.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhH----hcCCcEEEEcCCCCCcce
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV----VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~i----LsGrDvli~ApTGSGKTl 320 (439)
.+|.++--.+.+++.|.. .+... -...++++.+|+|+|||.
T Consensus 26 ~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~ 70 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTT 70 (338)
T ss_dssp CSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHH
T ss_pred CCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHH
Confidence 468888767777776643 11111 123589999999999995
No 101
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.54 E-value=0.18 Score=45.51 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.++.+++.+|+|+|||.
T Consensus 51 ~~~~~ll~G~~G~GKT~ 67 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTH 67 (242)
T ss_dssp SCSEEEEECSTTSSHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 46889999999999995
No 102
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=90.47 E-value=1.2 Score=39.14 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=53.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|+++..+..+...+... ++.+..++|+.+...+...+ + ..++|||+|. .+ ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCccc
Confidence 458999999999999999888754 56788999998776554333 2 3589999993 22 34577888
Q ss_pred cccEEEe
Q 013623 421 LRWYART 427 (439)
Q Consensus 421 Lr~LVlD 427 (439)
++++|.-
T Consensus 103 ~~~Vi~~ 109 (175)
T 2rb4_A 103 VTIVVNF 109 (175)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 8888843
No 103
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.44 E-value=1.8 Score=37.55 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.+++++-+..+...+... ++.+..++|+.....+...+ + ....|||+|. .+ ...+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCccc
Confidence 458999999999999998888764 46788899998766554333 2 4589999993 23 34567888
Q ss_pred cccEEEeCC
Q 013623 421 LRWYARTAS 429 (439)
Q Consensus 421 Lr~LVlDEA 429 (439)
++++|.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888876544
No 104
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.99 E-value=0.1 Score=49.20 Aligned_cols=93 Identities=11% Similarity=0.087 Sum_probs=51.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECC
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg 383 (439)
.|.=+++.+++|+|||.+. +-++.++.. .+-+++|+.|...- . . ...+.. ..++..
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~-----------~g~kVli~~~~~d~--r-~--~~~i~s-rlG~~~------ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEY-----------ADVKYLVFKPKIDT--R-S--IRNIQS-RTGTSL------ 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEEECCCG--G-G--CSSCCC-CCCCSS------
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHh-----------cCCEEEEEEeccCc--h-H--HHHHHH-hcCCCc------
Confidence 3556788999999999654 333333322 24467887664421 0 0 011111 011110
Q ss_pred CChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEeCCccchh
Q 013623 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYARTASLNIES 434 (439)
Q Consensus 384 ~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlDEAD~fe~ 434 (439)
..+-+.+...+++.+.... .-...++|||||++.|..
T Consensus 67 -------------~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~~ 103 (223)
T 2b8t_A 67 -------------PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFDD 103 (223)
T ss_dssp -------------CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSCT
T ss_pred -------------cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCcH
Confidence 1234566667777776432 223478999999987753
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.91 E-value=0.19 Score=46.01 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTr 355 (439)
|+=.++.++.|||||.+. +-++.+... .+-+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~l-l~~a~r~~~-----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEEL-IRRIRRAKI-----------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH-----------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH-----------CCCEEEEEEecc
Confidence 445788999999999654 333443322 356788888864
No 106
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.85 E-value=1.7 Score=41.26 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=27.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCcce
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTl 320 (439)
.+|+++--.+..++.|... ...+.. --....+++.+++|+|||.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~---------l~~~~~~~~~~~~vll~G~~GtGKT~ 53 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVY---------LEAAKARKEPLEHLLLFGPPGLGKTT 53 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHH---------HHHHHHHCSCCCCCEEECCTTCCCHH
T ss_pred ccHHHhhCHHHHHHHHHHH---------HHHHHccCCCCCcEEEECCCCCCHHH
Confidence 4677776566666666431 111100 0134789999999999995
No 107
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.73 E-value=2 Score=39.13 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=53.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|++++-+..+...+... ++.+..++|+.+...+...+ + ...+|||+|. ++ ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCcc
Confidence 458999999999999999888764 46788999998876654433 3 3588999993 22 34567777
Q ss_pred cccEEE
Q 013623 421 LRWYAR 426 (439)
Q Consensus 421 Lr~LVl 426 (439)
++++|.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 887764
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.28 E-value=0.65 Score=44.80 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+..+++.+|+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999953
No 109
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.07 E-value=0.37 Score=52.18 Aligned_cols=66 Identities=27% Similarity=0.395 Sum_probs=48.5
Q ss_pred CCCHHHHHHhhhHh----cCC-cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (439)
Q Consensus 290 ~pTpIQ~~aIP~iL----sGr-Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~ 364 (439)
.|+..|..+|..+. .|. ..++.+-||||||+...- ++... .. .+|||+|+..+|.|.++.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~-------------~~-~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV-------------NK-PTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------CC-CEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh-------------CC-CEEEEECCHHHHHHHHHH
Confidence 68888988887655 343 577889999999864311 22222 11 379999999999999999
Q ss_pred HHhhhc
Q 013623 365 CRSLSK 370 (439)
Q Consensus 365 l~~L~k 370 (439)
++.+..
T Consensus 77 l~~~~~ 82 (661)
T 2d7d_A 77 FKEFFP 82 (661)
T ss_dssp HHHHCT
T ss_pred HHHHcC
Confidence 999963
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.77 E-value=0.034 Score=50.34 Aligned_cols=40 Identities=25% Similarity=0.447 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTr 355 (439)
.|+=+++.++.|+|||...+ -++.++.. .+-+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll-~~~~~~~~-----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL-SFVEIYKL-----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH-HHHHHHHH-----------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHH-HHHHHHHH-----------CCCeEEEEeecc
Confidence 35557899999999996542 23333322 234678888763
No 111
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=88.02 E-value=0.73 Score=46.82 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCCHHHHHHhhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.++|.|...+-.+...+-+++..+-+.|||.+...-++..+.. ..+..+++++|+++-|..++..++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999988776555778999999999998766555544322 245689999999999999988887765
Q ss_pred c
Q 013623 370 K 370 (439)
Q Consensus 370 k 370 (439)
.
T Consensus 233 ~ 233 (385)
T 2o0j_A 233 E 233 (385)
T ss_dssp H
T ss_pred H
Confidence 4
No 112
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.94 E-value=2.5 Score=43.74 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=60.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.|+|+.-+..++..+..... .++.+..+.|+.....+...+ ....+|||+|- ++ ...+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCcc
Confidence 456899999999999999999988754 467888999998776554333 24589999994 23 3567888
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.+++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8998887654
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.42 E-value=1.1 Score=43.31 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.++.+++.+|+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 457899999999999963
No 114
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.09 E-value=2.9 Score=43.77 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=60.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.|+|+.-+..++..+..... .++.+..+.|+.....+...+ ....+|||+|- .+ ...+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcc
Confidence 456899999999999999999988754 467888999998776554333 24589999994 23 3567888
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.|++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8998887664
No 115
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.77 E-value=3.7 Score=40.16 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.+++++-+..+++.+... ++.+..++|+.....+...+ + ...+|||+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcc
Confidence 4668999999999999999888764 56788899998876554333 2 4589999994 343 457888
Q ss_pred CcccEEEe
Q 013623 420 NLRWYART 427 (439)
Q Consensus 420 ~Lr~LVlD 427 (439)
.+++||.=
T Consensus 344 ~v~~Vi~~ 351 (417)
T 2i4i_A 344 NVKHVINF 351 (417)
T ss_dssp CEEEEEES
T ss_pred cCCEEEEE
Confidence 88887753
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.94 E-value=1.3 Score=45.18 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+..+++.+|+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999953
No 117
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.06 E-value=5.7 Score=34.71 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|+++.-+..+...+... ++.+..++|+.+...+...+ . ....|||+|.- + ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-STTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-hcCcchhh
Confidence 457999999999999999888764 56788899998776554333 2 35899999942 2 23566677
Q ss_pred cccEEEeCC
Q 013623 421 LRWYARTAS 429 (439)
Q Consensus 421 Lr~LVlDEA 429 (439)
++++|.-+.
T Consensus 100 ~~~Vi~~d~ 108 (172)
T 1t5i_A 100 VNIAFNYDM 108 (172)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEECC
Confidence 777765443
No 118
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.97 E-value=1.1 Score=43.59 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
.+.+++.+|+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45799999999999964
No 119
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=83.96 E-value=4.2 Score=43.83 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.|+|+.-+..+...+... ++++..+.|+.....+...+ + ..++|||||- ++ ...+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccC
Confidence 3569999999999999999888764 46777888887766554432 3 3589999994 23 4567888
Q ss_pred CcccEEEeCCccc
Q 013623 420 NLRWYARTASLNI 432 (439)
Q Consensus 420 ~Lr~LVlDEAD~f 432 (439)
.++++|+-++|.|
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999998764
No 120
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=83.95 E-value=4.3 Score=39.48 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=52.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|+|++-+..+...+... ++.+..++|+.+...+...+ + ...+|||+|- ++ ...+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccc
Confidence 458999999999999888877653 57889999998776654433 2 4589999992 22 34677778
Q ss_pred cccEEE
Q 013623 421 LRWYAR 426 (439)
Q Consensus 421 Lr~LVl 426 (439)
+++||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 887764
No 121
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=83.25 E-value=3.9 Score=39.74 Aligned_cols=73 Identities=11% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|++++-+..++..+... ++.+..++|+.....+...+ + ...+|||+|. .+ ...+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccC
Confidence 458999999999999999988765 46788899998776654433 3 3588999994 22 45678888
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
+++||.-.
T Consensus 335 ~~~Vi~~~ 342 (412)
T 3fht_A 335 VSVVINFD 342 (412)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 88887433
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=82.99 E-value=9.6 Score=36.24 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=25.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC--c-EEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--S-CILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr--D-vli~ApTGSGKTla 321 (439)
.+|+++--.+.+++.|.+. +..++ + +++.+|+|+|||..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~---------------l~~~~~~~~~L~~G~~G~GKT~l 64 (324)
T 3u61_B 23 STIDECILPAFDKETFKSI---------------TSKGKIPHIILHSPSPGTGKTTV 64 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHH---------------HHTTCCCSEEEECSSTTSSHHHH
T ss_pred CCHHHHhCcHHHHHHHHHH---------------HHcCCCCeEEEeeCcCCCCHHHH
Confidence 5788887777777766431 11232 3 56667799999953
No 123
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.95 E-value=0.85 Score=43.01 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE 356 (439)
|.=.++.++-|+|||... +-.+.+... .+.+++|+.|...
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~-----------~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIY-----------AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHH-----------cCCceEEEEeccC
Confidence 444688899999999543 333443322 2457899988553
No 124
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.71 E-value=2 Score=38.28 Aligned_cols=74 Identities=12% Similarity=0.131 Sum_probs=44.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHH---HHhc-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~---~~L~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.|+++.-+..+...++.. ++.+..+.|+.+...+. ..++ ..+.|||+|- .+. ..+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCcc
Confidence 3568999999999999999888764 56788888887654432 2222 4588999993 232 345777
Q ss_pred CcccEEEeC
Q 013623 420 NLRWYARTA 428 (439)
Q Consensus 420 ~Lr~LVlDE 428 (439)
.+.++|.=+
T Consensus 114 ~~~~VI~~d 122 (185)
T 2jgn_A 114 NVKHVINFD 122 (185)
T ss_dssp SBSEEEESS
T ss_pred cCCEEEEeC
Confidence 788777533
No 125
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=82.29 E-value=0.49 Score=44.42 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE 356 (439)
|+=.++.++-|||||.+. +-++.+... .+-+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~l-L~~a~r~~~-----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEEL-IRRVRRTQF-----------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH-----------CCCEEEEEEeccC
Confidence 333567888899999653 333333322 3557899888654
No 126
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.23 E-value=4.2 Score=38.64 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.|++++-+.++++.++.. ++.+..++|+.+...+...+ . ...+|||+|. .+. ..+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCcc
Confidence 4567899999999999999888765 46788889988766553333 2 3588999993 333 346777
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.++++|.-..
T Consensus 306 ~~~~Vi~~~~ 315 (367)
T 1hv8_A 306 DLNCVINYHL 315 (367)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEecC
Confidence 7887776443
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.15 E-value=1.5 Score=42.62 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=13.6
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
.+++.+|+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999963
No 128
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=81.37 E-value=5.1 Score=38.49 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=56.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
...++||.+++++-+..++..++.. ++.+..++|+.....+...+ + ...+|||+|. .+ ...+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcc
Confidence 3468999999999999999888764 46788899998776554333 3 3588999994 22 4567888
Q ss_pred CcccEEEeCCc
Q 013623 420 NLRWYARTASL 430 (439)
Q Consensus 420 ~Lr~LVlDEAD 430 (439)
.+++||.-+..
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 89988865553
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=81.22 E-value=1 Score=39.33 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|+.+++.+|+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478999999999999853
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.15 E-value=1.2 Score=42.89 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.++.+++.+++|+|||..
T Consensus 44 ~~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCCEEEEECTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356899999999999963
No 131
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=79.93 E-value=0.67 Score=50.52 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=41.7
Q ss_pred CCCHHHHHHhhhHhc--CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 013623 290 RPSQIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (439)
Q Consensus 290 ~pTpIQ~~aIP~iLs--GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l 365 (439)
.+|.-|.+++..++. ..-.++.|.-|.|||.+.-+.+ ..+. -.++|.+|+.+-+..+.+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~--------------~~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIA--------------GRAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSS--------------SCEEEECSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHH--------------hCcEEECCCHHHHHHHHHHh
Confidence 578899999988775 2347999999999994332222 2221 13599999999877555443
No 132
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=79.86 E-value=2.5 Score=48.65 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=62.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.+++|+|++++-+..+++.++.+. .++++..+.|+.+...+...+ ...++|||+|- + -...+++.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v-~e~GiDip 881 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----I-IETGIDIP 881 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----T-TGGGSCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-ceeeeccc
Confidence 46789999999999999999888774 357888999998776543332 24589999994 2 34567899
Q ss_pred CcccEEEeCCccch
Q 013623 420 NLRWYARTASLNIE 433 (439)
Q Consensus 420 ~Lr~LVlDEAD~fe 433 (439)
+++++|+..+|.|.
T Consensus 882 ~v~~VIi~~~~~~~ 895 (1151)
T 2eyq_A 882 TANTIIIERADHFG 895 (1151)
T ss_dssp TEEEEEETTTTSSC
T ss_pred CCcEEEEeCCCCCC
Confidence 99999998887654
No 133
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.51 E-value=4.9 Score=38.75 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.+++++-+..+++.+... ++.+..+.|+.....+...+ . ....|||+|. .+ ...+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CC-SSCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hh-hcCCCcc
Confidence 3568999999999999999888764 46788889988766553333 2 3588999993 22 3456778
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.++++|.-+.
T Consensus 318 ~~~~Vi~~~~ 327 (391)
T 1xti_A 318 RVNIAFNYDM 327 (391)
T ss_dssp TEEEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888886554
No 134
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.42 E-value=9.7 Score=36.90 Aligned_cols=73 Identities=8% Similarity=0.148 Sum_probs=53.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|++++-+..+++.+..+ ++.+..+.|+.....+...+ . ....|||+|- .+ ...+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 458999999999999999888765 46688889988776553333 2 3578999993 22 34567777
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
++++|.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88777543
No 135
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=78.73 E-value=1.2 Score=44.80 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=21.9
Q ss_pred hhhHhcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 299 IP~iLsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
+|.-....++++.|+||||||... ..++..+
T Consensus 47 ~~~~~~~~h~~i~G~tGsGKs~~~-~~li~~~ 77 (437)
T 1e9r_A 47 MPRDAEPRHLLVNGATGTGKSVLL-RELAYTG 77 (437)
T ss_dssp CCGGGGGGCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred cccccCcceEEEECCCCCCHHHHH-HHHHHHH
Confidence 333345689999999999999863 4444444
No 136
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=78.59 E-value=0.61 Score=43.16 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCc
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPT 354 (439)
|+=.++.++.|||||.- |+-.+.+... .+-+++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-----------~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQI-----------AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHH-----------TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHH-----------cCCeEEEEccc
Confidence 55578999999999942 3333333322 23577888775
No 137
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.73 E-value=7 Score=39.27 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=52.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCCcc
Q 013623 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLR 422 (439)
Q Consensus 347 ~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~Lr 422 (439)
.+||.|+|+.-|..+.+.+... ++.+..+.|+.....+...+ + ..+.|||+|- . -...+++..++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCC
Confidence 3999999999999999888754 56788899998776554433 3 3489999994 2 24567888888
Q ss_pred cEEEe
Q 013623 423 WYART 427 (439)
Q Consensus 423 ~LVlD 427 (439)
+||.=
T Consensus 371 ~VI~~ 375 (434)
T 2db3_A 371 HVINY 375 (434)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 88753
No 138
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=77.53 E-value=6.4 Score=38.46 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=53.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCCCc
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLINL 421 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~~L 421 (439)
.++||.|++++-+..+.+.+... ++.+..+.|+.....+...+ .....|||+|. ++ ...+++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 48999999999999998888764 46788899998766554333 24588999994 22 356788888
Q ss_pred ccEEEeC
Q 013623 422 RWYARTA 428 (439)
Q Consensus 422 r~LVlDE 428 (439)
+++|.-+
T Consensus 346 ~~Vi~~~ 352 (410)
T 2j0s_A 346 SLIINYD 352 (410)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 8877543
No 139
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=76.83 E-value=6 Score=42.02 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=55.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+..+||.|+|+.-+.+++..+... ++.+..+.|+.....+...+ ....+|||+|- .+ ...+++.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~~GID~p 334 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-GMGIDKP 334 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-CTTCCCS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hcCCCcc
Confidence 4568999999999999999988764 56788999998776653333 34589999993 22 3456888
Q ss_pred CcccEEEeC
Q 013623 420 NLRWYARTA 428 (439)
Q Consensus 420 ~Lr~LVlDE 428 (439)
+|++||.=.
T Consensus 335 ~V~~VI~~~ 343 (591)
T 2v1x_A 335 DVRFVIHHS 343 (591)
T ss_dssp CEEEEEESS
T ss_pred cccEEEEeC
Confidence 888887543
No 140
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=76.69 E-value=5.5 Score=42.93 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=58.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---hc-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|+|+.-+..+...+... ++.+..+.|+.....+... ++ ..++|||||- ++ ...+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 569999999999999999888764 4677788888776655443 33 3489999992 23 45678888
Q ss_pred cccEEEeCCccc
Q 013623 421 LRWYARTASLNI 432 (439)
Q Consensus 421 Lr~LVlDEAD~f 432 (439)
++++|+=++|.|
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888754
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=76.65 E-value=1 Score=38.31 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.7
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..+.++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34678999999999999853
No 142
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=76.19 E-value=1.3 Score=37.77 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCCCccee
Q 013623 303 VEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTla 321 (439)
..+.++++.+++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4678999999999999854
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.78 E-value=0.87 Score=47.02 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=36.0
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~---gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+..+|++++-.+.+.+.|.+. -+.+|-.++...++ --+.+|+.+|+|+|||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 457999999888888888652 12233333333222 237899999999999964
No 144
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=75.41 E-value=7.9 Score=40.27 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+..+||.|+|+.-+.++++.++.. ++.+..++|+.+...+...+ ....+|||+|. .+ ...+++.
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~~GiD~p 303 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-GMGINKP 303 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-CTTTCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hCCCCcc
Confidence 3457899999999999999888764 46788899998765543322 34589999995 22 3456788
Q ss_pred CcccEEEeC
Q 013623 420 NLRWYARTA 428 (439)
Q Consensus 420 ~Lr~LVlDE 428 (439)
++++||.-.
T Consensus 304 ~v~~VI~~~ 312 (523)
T 1oyw_A 304 NVRFVVHFD 312 (523)
T ss_dssp TCCEEEESS
T ss_pred CccEEEEEC
Confidence 888887644
No 145
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.56 E-value=2.6 Score=41.07 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=31.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhc-----CCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-----GKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLs-----GrDvli~ApTGSGKTla 321 (439)
..+|++++=.+.+.+.|.+.= +.-.-.|.++. .+.+++.+|+|+|||..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v------~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV------ILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH------HHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH------HHHHhCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 368999987888888775420 00011122322 36899999999999953
No 146
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=73.41 E-value=7.5 Score=37.96 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=51.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEEC--------CCChHHHHHH---hc-CCCcEEEEChHHHHHHH
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLEN---LQ-EGVDVLIATPGRFMFLI 411 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~G--------g~~~~~q~~~---L~-~g~dILVaTPgrLldlL 411 (439)
.+.++||.+++++-+..+.+.+... ++.+..+.| +.+...+... .. ..+.|||+|- .+
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc
Confidence 4668999999999999999888765 567888888 5544433322 22 4589999993 22
Q ss_pred HhCCCCCCCcccEEEeCC
Q 013623 412 KEGILQLINLRWYARTAS 429 (439)
Q Consensus 412 ~~~~l~L~~Lr~LVlDEA 429 (439)
...+++..+++||+-+.
T Consensus 430 -~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 430 -EEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp -GGGGGSTTCCEEEESSC
T ss_pred -ccCCCchhCCEEEEeCC
Confidence 34577778888886554
No 147
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=73.36 E-value=4.2 Score=42.73 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|..+++.+|+|+|||.
T Consensus 107 ~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTS 123 (543)
T ss_dssp CSCEEEEESSSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 58899999999999995
No 148
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=72.59 E-value=2.8 Score=40.15 Aligned_cols=52 Identities=17% Similarity=0.338 Sum_probs=31.6
Q ss_pred cccccccCCCHHHHHHHHHCC---CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQN---FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~g---f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
..+|++++-.+.+++.|.+.- +..|...+.. .+..++.+++.+|+|+|||..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHH
Confidence 357999987787777775520 0000000000 012467899999999999964
No 149
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.23 E-value=1 Score=42.21 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=31.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHH-HHHhhh--HhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPP--VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ-~~aIP~--iLsGrDvli~ApTGSGKTla 321 (439)
.+|+++.-.+..++.|.+.-. . +.+ ...+.. +...+.+++.+|+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~-~--~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE-L--PLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH-H--HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH-H--HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 579999878888887755210 0 000 011111 13467899999999999953
No 150
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.71 E-value=3.3 Score=38.22 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=30.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHh------cCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV------EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL------sGrDvli~ApTGSGKTla 321 (439)
..+|+++.-.+.+.+.|.+. ++...-|..+ ..+.+++.+|+|+|||..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-------VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-------HHHHHCGGGC-----CCCCEEEEECCTTSCHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-------HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHH
Confidence 35799998888887777542 1111111111 135799999999999953
No 151
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=71.67 E-value=3.5 Score=38.77 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=31.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhH-----hcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV-----VEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~i-----LsGrDvli~ApTGSGKTla 321 (439)
..+|.++.=.+.+++.|.+.-. .-...|.+ ..++.+++.+|+|+|||..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~------~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI------LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH------HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH------hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 3579998778888888755210 00001111 1357899999999999963
No 152
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=73.66 E-value=0.85 Score=39.88 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=46.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|+++.-+..+...++.. ++.+..++|+.....+...+ . ..+.|||+|. .+ ...+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPD 98 (170)
Confidence 357899999999999888887654 46777888887655443333 2 2478999993 22 22345555
Q ss_pred cccEEE
Q 013623 421 LRWYAR 426 (439)
Q Consensus 421 Lr~LVl 426 (439)
++++|.
T Consensus 99 ~~~Vi~ 104 (170)
T 2yjt_D 99 VSHVFN 104 (170)
Confidence 555554
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.95 E-value=7 Score=39.85 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
.|.=+++.|++|+|||. |++-++..+.
T Consensus 202 ~G~liiI~G~pG~GKTt-l~l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTA-FALNIAQNVA 228 (454)
T ss_dssp TTCEEEEECCTTSCHHH-HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHHHHH
Confidence 56779999999999995 4444444443
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=70.21 E-value=3.6 Score=37.63 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=29.4
Q ss_pred ccccccCCCHHHHHHHHHCC--CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~g--f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.+|+++.-.+.+.+.|.++- +..|..+.... +-..+.+++.+|+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHH
Confidence 46888876777777775420 11111111111 12346799999999999953
No 155
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=69.98 E-value=3 Score=39.62 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTr 355 (439)
|+=.++.++-|+|||.+. +-.+.+.. ..+-+++|+-|..
T Consensus 19 g~l~v~~G~MgsGKTT~l-L~~~~r~~-----------~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTEL-MRRVRRFQ-----------IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHHHHH-----------TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHH-----------HCCCeEEEEeecC
Confidence 454677888899999653 22333221 2456788888754
No 156
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.61 E-value=6.1 Score=48.18 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH
Q 013623 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (439)
Q Consensus 305 GrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE 356 (439)
|+++++.+|+|+|||...+.-+.... ..+.+++++..-..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~------------~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ------------REGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH------------HcCCcEEEEEcccc
Confidence 68999999999999975433333222 13557787775533
No 157
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=69.54 E-value=12 Score=35.05 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=49.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
.+.++||.+++++-+..+.+.+. .+..+.|+.+...+...+ . ...+|||+|. .+. ..+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCcc
Confidence 45679999999999877665543 356677887765554333 2 3589999993 343 467888
Q ss_pred CcccEEEeCC
Q 013623 420 NLRWYARTAS 429 (439)
Q Consensus 420 ~Lr~LVlDEA 429 (439)
.++++|.-..
T Consensus 284 ~~~~Vi~~~~ 293 (337)
T 2z0m_A 284 LVEKVINFDA 293 (337)
T ss_dssp CBSEEEESSC
T ss_pred CCCEEEEecC
Confidence 8998887544
No 158
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=68.82 E-value=13 Score=38.79 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=38.2
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhc
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k 370 (439)
.|..+.+.+-||||||+. +..+ ... .+-.+|||+|+..+|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l---~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEI---AER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHH---HHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHH---HHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 466789999999999753 2222 121 012379999999999999999998853
No 159
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=67.94 E-value=7.9 Score=41.94 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=48.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
+.++||+||+++-+.+++..++.. ++++..+.|. .....+..+. ...+|||+|- ++ ...+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~-e~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----IS-EMGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GG-GTTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hh-hcceeeC-CcE
Confidence 568999999999999988888754 5678888884 2222333343 3589999993 33 3456777 877
Q ss_pred EE
Q 013623 424 YA 425 (439)
Q Consensus 424 LV 425 (439)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 160
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=67.83 E-value=4.7 Score=39.03 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=28.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
..+|+++--.+..++++..+ ...+-.....++.+++.+|+|+|||..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l--------~~~~~~~~~~~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVV--------LEMIREGKIAGRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CSEETTEESCHHHHHHHHHH--------HHHHHTTCCTTCEEEEEESTTSSHHHH
T ss_pred CcchhhccChHHHHHHHHHH--------HHHHHcCCCCCCEEEEECCCCCCHHHH
Confidence 34588876666666655321 111111112356899999999999963
No 161
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.75 E-value=4.4 Score=39.06 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=32.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHh-----cCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL-----sGrDvli~ApTGSGKTla 321 (439)
..+|.++.-.+.+++.|.+.=. .-...|.++ ..+.+++.+|+|+|||..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~------~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI------LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH------HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH------HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 4679999888888888865310 011122222 235799999999999964
No 162
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=66.94 E-value=7.2 Score=39.41 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=38.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh-cCCCcEEEECh
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-QEGVDVLIATP 404 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L-~~g~dILVaTP 404 (439)
+.++||+||+++-+..+++.++.. ++++..+.|+.. ......+ ....+|||+|-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc
Confidence 347999999999999999888765 467888888632 2222233 24589999993
No 163
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=66.89 E-value=7.1 Score=39.61 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=45.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
+.++||+||+++-+.++++.++.. ++++..+.|.... .....+. ...+|||+|. .+ ...+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----IA-EMGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC---------CCCSEEEESS-----ST-TCCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----hh-heeeccC-ceE
Confidence 458999999999999999888765 4678888884332 2333333 3589999993 23 3456777 887
Q ss_pred EE
Q 013623 424 YA 425 (439)
Q Consensus 424 LV 425 (439)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=65.84 E-value=3.5 Score=41.30 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=18.8
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|.-+++.+|+|+|||. +++.++..+
T Consensus 60 ~G~i~~I~GppGsGKST-Lal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTT-LALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHH-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHH-HHHHHHHHH
Confidence 46778999999999995 444444444
No 165
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=65.58 E-value=4.2 Score=40.79 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.4
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|+-+++.+++|+|||. +++.++..+
T Consensus 73 ~G~li~I~G~pGsGKTt-lal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTT-LALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHH-HHHHHHHHH
Confidence 46779999999999995 445555544
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=65.27 E-value=2.9 Score=36.06 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|+.+++.+++|+|||.
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 68899999999999985
No 167
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.62 E-value=2 Score=44.07 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=33.9
Q ss_pred ccccccccCCCHHHHHHHHHCC---CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQN---FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~g---f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
|..+|+++|=-+.+.+.|++.= +.+|-.++...++ --+.+|+.+|+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA---QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCceEEeCCCCCCHHHH
Confidence 4578999987777777775521 1222222222211 237899999999999964
No 168
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=64.43 E-value=15 Score=37.03 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=48.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEEC--------CCChHHHHH---HhcC--CCcEEEEChHHHHHH
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLE---NLQE--GVDVLIATPGRFMFL 410 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~G--------g~~~~~q~~---~L~~--g~dILVaTPgrLldl 410 (439)
...++||.|+++.-+..+.+.+...... ..+++..+.| +.+...+.. ..+. .++|||+|- .
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~ 461 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPAL-SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----V 461 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGG-TTCCEEECCC--------------------------CCSEEEECC-----C
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCc-CceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----h
Confidence 3568999999999999999999876431 2345555554 444433322 3333 479999994 2
Q ss_pred HHhCCCCCCCcccEEEeCC
Q 013623 411 IKEGILQLINLRWYARTAS 429 (439)
Q Consensus 411 L~~~~l~L~~Lr~LVlDEA 429 (439)
+ ...+++..+++||.=+.
T Consensus 462 ~-~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 462 A-DEGIDIAECNLVILYEY 479 (555)
T ss_dssp T-TCCEETTSCSEEEEESC
T ss_pred h-hcCCccccCCEEEEeCC
Confidence 2 35678888998886443
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=64.07 E-value=12 Score=41.14 Aligned_cols=75 Identities=11% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhc------CCCCceEEEEECCCChHHHHHHhc---------CCCcEEEEChHHHHH
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSK------CGVPFRSMVVTGGFRQKTQLENLQ---------EGVDVLIATPGRFMF 409 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k------~~~~i~v~~l~Gg~~~~~q~~~L~---------~g~dILVaTPgrLld 409 (439)
...+||.+|+++-+.++...+..... ...++.+..++|+.....+...+. ....|||+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 56899999999999999988875321 125688999999998877755543 2368999994
Q ss_pred HHHhCCCCCCCcccEE
Q 013623 410 LIKEGILQLINLRWYA 425 (439)
Q Consensus 410 lL~~~~l~L~~Lr~LV 425 (439)
++. ..+++..+++||
T Consensus 378 iae-~GidIp~v~~VI 392 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVV 392 (773)
T ss_dssp HHH-HTCCCTTEEEEE
T ss_pred HHH-hCcCcCCeEEEE
Confidence 333 457788888766
No 170
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=63.71 E-value=1.1 Score=42.68 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=26.2
Q ss_pred cccccccCCCHHHHHHHHHC-C--CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQ-N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~-g--f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
..+|++++-.+++.+.|.+. - +..+. ....+..- -.+.+++.+|+|+|||..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~--~l~~~~l~-~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPD--QFKALGLV-TPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHH--HHHHTTCC-CCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHH--HHHHcCCC-CCCeEEEECCCCCcHHHH
Confidence 46799998888888877552 1 11111 11111111 123499999999999953
No 171
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.02 E-value=3.9 Score=40.85 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.-+++.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455799999999999853
No 172
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=62.92 E-value=4.4 Score=42.44 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=31.2
Q ss_pred CccccccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh-HhcCCcEEEEcCCCCCccee
Q 013623 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 263 ~~~s~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~-iLsGrDvli~ApTGSGKTla 321 (439)
+.+.+..|....+. +..|.+.|. +++.+..-+.. +-.|..+++.+|||||||..
T Consensus 222 ~~i~IR~~~~~~~~---~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 222 SSFTIRKFTIEPLT---PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SEEEEEECCCCCCC---HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CEEEEEecCCCCCC---hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 33444444443332 334445553 23444444433 44788999999999999853
No 173
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.82 E-value=6.6 Score=38.18 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHH---hc-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~---L~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.+++++-+..+++.+... ++.+..++|+.....+... ++ ...+|||+|. ++ ...+++..
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 348 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LL-ARGIDVQQ 348 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SC-C--CCGGG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-ccCCCccC
Confidence 347899999999999998888753 5678888888876554333 33 3478999994 22 23466777
Q ss_pred cccEEEeC
Q 013623 421 LRWYARTA 428 (439)
Q Consensus 421 Lr~LVlDE 428 (439)
+++||.-.
T Consensus 349 v~~Vi~~~ 356 (414)
T 3eiq_A 349 VSLVINYD 356 (414)
T ss_dssp CSCEEESS
T ss_pred CCEEEEeC
Confidence 77776533
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.43 E-value=6.6 Score=40.76 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=29.4
Q ss_pred ccccccCCCHHHHHHHHHC----------CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQ----------NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~----------gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.+|.++.-.+..++.|... +|..+-. ...-..+.+++.+|+|+|||..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~------~~~~~~~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGK------DGSGVFRAAMLYGPPGIGKTTA 93 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCT------TSTTSCSEEEEECSTTSSHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCc------cCCCCCcEEEEECCCCCCHHHH
Confidence 5788987777777766441 1111100 0000236899999999999964
No 175
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=62.40 E-value=6 Score=41.97 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=49.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcC-CCCceEEEEECC--------CChHHHHHHh---c-CCCcEEEEChHHHHHHH
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGG--------FRQKTQLENL---Q-EGVDVLIATPGRFMFLI 411 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~-~~~i~v~~l~Gg--------~~~~~q~~~L---~-~g~dILVaTPgrLldlL 411 (439)
+.++||.++++..+..+.+.+...... ..++++..+.|+ .+..++...+ + ...+|||+|- ++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999999999875221 136888888888 6665554433 3 3478999993 22
Q ss_pred HhCCCCCCCcccEEEe
Q 013623 412 KEGILQLINLRWYART 427 (439)
Q Consensus 412 ~~~~l~L~~Lr~LVlD 427 (439)
...+++..+++||.=
T Consensus 475 -~~GIDip~v~~VI~~ 489 (699)
T 4gl2_A 475 -EEGLDIKECNIVIRY 489 (699)
T ss_dssp -CTTSCCCSCCCCEEE
T ss_pred -ccCCccccCCEEEEe
Confidence 345677777777643
No 176
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=62.18 E-value=5.5 Score=35.12 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+.+++.+++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999964
No 177
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=61.21 E-value=2.2 Score=39.40 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=29.3
Q ss_pred cccccccCCCHHHHHHHHHCC--CCCCCHHHHHHhhhHh--cCCcEEEEcCCCCCcce
Q 013623 267 RKSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTL 320 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~g--f~~pTpIQ~~aIP~iL--sGrDvli~ApTGSGKTl 320 (439)
..+|+++.-.+.+...+...- |..+ ..+..+- -.+.+++.+|+|+|||.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 357999877777766665431 1111 1111110 12459999999999985
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=61.14 E-value=4.2 Score=40.46 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|.=+++.|++|+|||. |++-++..+
T Consensus 45 ~G~LiiIaG~pG~GKTt-~al~ia~~~ 70 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTS-LMMNMVLSA 70 (338)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHH
Confidence 45668999999999995 444444444
No 179
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=60.12 E-value=8.2 Score=33.73 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=25.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTla 321 (439)
..|.++--.+..++.|... +..+ +.+++.+++|+|||..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHH---------------HHHTCCCSEEEEECSTTSCHHHH
T ss_pred ccHHHHhCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHH
Confidence 4566665566666665331 1123 3689999999999953
No 180
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=60.03 E-value=7.1 Score=38.67 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=29.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh----H-hcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP----V-VEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~----i-LsGrDvli~ApTGSGKTla 321 (439)
.+|+++.-...+++.|.+.-. .....+. + ...+++|+.+|+|+|||..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVI------LPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH------HHHHCTTTSCGGGCCCSEEEEESSTTSCHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHH------HhccCHHHhcccCCCCceEEEECCCCCCHHHH
Confidence 468888767777777754210 0000011 1 1357899999999999963
No 181
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=59.76 E-value=3.4 Score=38.28 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
.+.+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45799999999999864
No 182
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.61 E-value=7.6 Score=38.12 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=30.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHH-HHhh-hHhcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQA-MAFP-PVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~-~aIP-~iLsGrDvli~ApTGSGKTla 321 (439)
..+|+++.-.+.+++.|.+.=. .++.. ..+. .....+.+++.+|+|+|||..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHH
Confidence 3578888767777777754210 00000 0000 112357899999999999964
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=58.79 E-value=3.4 Score=34.97 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
.+.+++.+++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999964
No 184
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.77 E-value=6.3 Score=38.52 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
...++++.+|+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 457899999999999974
No 185
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=58.13 E-value=7.9 Score=39.42 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=29.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcceee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTlay 322 (439)
...|+++.-.+.+++.+... ++ ..-.....++++++.+|+|+|||...
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~-------~~-~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVI-------VE-LIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEESCHHHHHHHHHH-------HH-HHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccCHHHHHHHHHHH-------HH-HHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 34678876677776665431 00 11111224578999999999999643
No 186
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=58.10 E-value=4.5 Score=37.46 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.+.++++.+++|+|||.
T Consensus 28 ~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKEL 44 (265)
T ss_dssp SCSCEEEECCTTSCHHH
T ss_pred CCCCEEEECCCCCcHHH
Confidence 56899999999999995
No 187
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=57.96 E-value=33 Score=34.67 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=50.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh----cCCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L----~~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+...+|++...+-+..+.+.+... +.++..+.|+.....+...+ ....+|||+|+..+ . ..+++..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~-~GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----S-TGISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----H-HSCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----h-ccccccc
Confidence 345556666566666666666543 24788899988765543322 34579999996543 3 3468888
Q ss_pred cccEEEeCCc
Q 013623 421 LRWYARTASL 430 (439)
Q Consensus 421 Lr~LVlDEAD 430 (439)
++++|+...+
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999988775
No 188
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=57.54 E-value=16 Score=39.69 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=50.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
.+.++||.++|++-+.++++.++.. ++.+..++|+..... ..+.+.+|||+| +++.++ +++. +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e---r~~~~~~VLVAT-----dVaerG-IDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV---IPTIGDVVVVAT-----DALMTG-YTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG---SCSSSCEEEEEC-----TTHHHH-CCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH---HHhCCCcEEEEC-----ChHHcc-CCCC-CcE
Confidence 4568999999999999998888753 578889999887653 223557999999 345444 4565 887
Q ss_pred EE
Q 013623 424 YA 425 (439)
Q Consensus 424 LV 425 (439)
||
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 189
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=56.54 E-value=8 Score=40.41 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=26.3
Q ss_pred HHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCcce
Q 013623 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 279 Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTl 320 (439)
+...|.. .+..-..+=..++-.+..+.++++.+|+|+|||.
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHH
Confidence 3444432 3333233334455556688999999999999995
No 190
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=56.29 E-value=3 Score=39.24 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=30.2
Q ss_pred cccccccCCCHHHHHHHHHCC--CCCCCHHHHHHhhhHh--cCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~g--f~~pTpIQ~~aIP~iL--sGrDvli~ApTGSGKTla 321 (439)
..+|+++.-.+.+...+...- |..+ ..+..+- -.+.+++.+|+|+|||..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 357999987887777775531 1111 1111110 124599999999999853
No 191
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=56.03 E-value=7 Score=41.40 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=44.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEEC--------CCChHHHHH---Hhc--CCCcEEEEChHHHHHH
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLE---NLQ--EGVDVLIATPGRFMFL 410 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~G--------g~~~~~q~~---~L~--~g~dILVaTPgrLldl 410 (439)
.+.++||.+++++-+..+.+.+...... ..+++..++| +.+..++.. ..+ ...+|||+|- .
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~-~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTC-CSCCEEC-----------------------------CCSCSEEEE-----S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc-cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----h
Confidence 4568999999999999999999876432 2367777765 554444433 233 3478999993 2
Q ss_pred HHhCCCCCCCcccEEEeCC
Q 013623 411 IKEGILQLINLRWYARTAS 429 (439)
Q Consensus 411 L~~~~l~L~~Lr~LVlDEA 429 (439)
+ ...+++..+++||.=+.
T Consensus 471 ~-~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 A-DEGIDIAQCNLVILYEY 488 (696)
T ss_dssp S-CCC---CCCSEEEEESC
T ss_pred h-hcCCcCccCCEEEEeCC
Confidence 2 35678888998886443
No 192
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.93 E-value=2.3 Score=43.88 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=33.1
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~---gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+..+|+++|=-+...+.|.+. -+.+|--++...+ ---+-+|+.+|+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 456899998777777777542 1112211221111 1237899999999999964
No 193
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=55.84 E-value=31 Score=37.38 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=54.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChH---HHHHHhc---CCCcEEEEChHHHHHHHHhCCCCCC
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK---TQLENLQ---EGVDVLIATPGRFMFLIKEGILQLI 419 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~---~q~~~L~---~g~dILVaTPgrLldlL~~~~l~L~ 419 (439)
...+|+++|+.-+.++...++.. ++.+..++|+.... .+...+. ...+|||||- .+ ...+++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi- 388 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL- 388 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-
Confidence 34577799999888888777753 57889999999876 3444554 3489999994 33 456788
Q ss_pred CcccEEEeCCccc
Q 013623 420 NLRWYARTASLNI 432 (439)
Q Consensus 420 ~Lr~LVlDEAD~f 432 (439)
.+++||.-....+
T Consensus 389 ~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 SIRRIIFYSLIKP 401 (677)
T ss_dssp CBSEEEESCSBC-
T ss_pred CccEEEECCcccc
Confidence 8999988777654
No 194
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=55.76 E-value=22 Score=38.01 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=46.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh-cCCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L-~~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
..++||.|+|++-+.++++.++.. ++++..+.|... ...+..+ ....+|||+|. ++. ..+++. +++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~ 421 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGR 421 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTTH-HHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChHHH-HHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceE
Confidence 347999999999999999888765 466777887532 2222333 24589999994 343 456665 776
Q ss_pred E
Q 013623 424 Y 424 (439)
Q Consensus 424 L 424 (439)
|
T Consensus 422 V 422 (618)
T 2whx_A 422 V 422 (618)
T ss_dssp E
T ss_pred E
Confidence 6
No 195
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.55 E-value=9.8 Score=34.74 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=24.5
Q ss_pred CCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 291 pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
-+.-|..++.-+..|.-+.+.+|+|+|||..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3445666777777899999999999999864
No 196
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=55.38 E-value=12 Score=35.79 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++.+++|+|||..
T Consensus 97 ~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TTEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999963
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=55.29 E-value=7.1 Score=38.44 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=30.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHh-----cCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iL-----sGrDvli~ApTGSGKTla 321 (439)
.+|++++-.+.+++.|.+.=. .-...|.++ ..+.+++.+|+|+|||..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~------~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVI------LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTH------HHHHCGGGGCSSCCCCCCEEEECSTTSCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH------HHHhCHHHHhcCCCCCceEEEECCCCCcHHHH
Confidence 578888766777777754210 001122222 236799999999999964
No 198
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.02 E-value=2.8 Score=43.74 Aligned_cols=53 Identities=25% Similarity=0.443 Sum_probs=34.3
Q ss_pred ccccccccCCCHHHHHHHHHCC---CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQN---FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~g---f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
|..+|+++|=-+++.+.|++.= +..|-.++...+ ---+.+|+.+|+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCCcHHHH
Confidence 5578999988888888886521 112211222111 1247899999999999963
No 199
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=54.42 E-value=5.7 Score=39.86 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=19.3
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+.-++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 5566788987 566779999999653
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.33 E-value=3.4 Score=42.51 Aligned_cols=53 Identities=13% Similarity=0.341 Sum_probs=32.3
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~---gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+..+|+++|=-+.+.+.|.+. -+.+|--++...+ ---+-+|+.+|+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 446899998777777777542 1111111221111 1236799999999999964
No 201
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=54.24 E-value=15 Score=34.20 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
..++++.+|+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999953
No 202
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=53.61 E-value=3.4 Score=35.09 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
.+++++.+++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 56899999999999853
No 203
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=53.39 E-value=6.6 Score=38.82 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.0
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4455678887 677789999999764
No 204
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=53.26 E-value=11 Score=35.38 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=26.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTla 321 (439)
.+|.++--.+.+++.|... +..+ .++++.+|+|+|||..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHY---------------VKTGSMPHLLFAGPPGVGKTTA 62 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHH---------------HHHTCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhhCCHHHHHHHHHH---------------HHcCCCCeEEEECcCCCCHHHH
Confidence 4677775566666666431 1123 3699999999999964
No 205
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.91 E-value=6.2 Score=37.66 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
.++++.+|+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4699999999999954
No 206
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=52.88 E-value=18 Score=36.57 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=45.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCcccE
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRWY 424 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~L 424 (439)
.++||.||+++-+.+++..++.. ++.+..+.|.... ..+..++ ...+|||+|- ++ ...+++.. ++|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRV 255 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEE
Confidence 37999999999999999888754 4667777776542 2333333 3589999993 33 34556666 554
Q ss_pred E
Q 013623 425 A 425 (439)
Q Consensus 425 V 425 (439)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 4
No 207
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=52.72 E-value=4.4 Score=38.86 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.6
Q ss_pred hhHhcCCcEEEEcCCCCCcce
Q 013623 300 PPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 300 P~iLsGrDvli~ApTGSGKTl 320 (439)
-.+..++++++.+|+|+|||.
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~ 61 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTL 61 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHH
Confidence 344568999999999999995
No 208
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=52.66 E-value=6.3 Score=39.32 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=18.8
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+.-++||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455678887 567789999999753
No 209
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=52.62 E-value=3.8 Score=38.62 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+.++++.+|+|+|||..
T Consensus 67 ~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999964
No 210
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.61 E-value=8.7 Score=38.00 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.++++.++||+|||..
T Consensus 34 ~~~~~~i~G~~G~GKs~~ 51 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT 51 (392)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred ccCceEEEcCCCCCHHHH
Confidence 577999999999999954
No 211
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=52.57 E-value=4.8 Score=34.87 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..++.+++.+++|||||..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHH
T ss_pred cccCCeEEEEeCCCCCHHHH
Confidence 34678899999999999864
No 212
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=52.56 E-value=8.5 Score=39.26 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=25.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.++++++++......|.. + ....|.-+++.+|||||||..
T Consensus 144 ~~l~~Lg~~~~~~~~L~~-------------l-~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRR-------------L-IKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCGGGSCCCHHHHHHHHH-------------H-HTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHcCCCHHHHHHHHH-------------H-HHhcCCeEEEECCCCCCHHHH
Confidence 356777776654444322 1 112455689999999999863
No 213
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=52.04 E-value=7.7 Score=34.87 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++.|++|+|||..
T Consensus 29 ~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 356799999999999953
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=51.85 E-value=5 Score=35.15 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCCCcce
Q 013623 303 VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTl 320 (439)
+.|+=+++++|+|+|||.
T Consensus 3 ~~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357778999999999986
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.83 E-value=4.5 Score=41.81 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=33.4
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~---gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
+..+|+++|=-+.+.+.|.+. -+.+|--++...++ --+.+|+.+|+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 457899998667776666542 12233223322221 237899999999999963
No 216
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=51.76 E-value=6.8 Score=39.08 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=20.1
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6777889988 566779999999764
No 217
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.69 E-value=12 Score=38.08 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhH-----hcCCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV-----VEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~i-----LsGrDvli~ApTGSGKTla 321 (439)
..+|.+++-.+.+.+.|.+.-. .|+ -.|.+ ...+.+++.+|+|+|||..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHH---HCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHh---hCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 3579999877788777754210 000 01111 2347899999999999953
No 218
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=51.64 E-value=7.3 Score=38.76 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=18.8
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 4455678887 567779999999653
No 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=51.21 E-value=10 Score=33.51 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=16.3
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..|.-+++.+++|+|||..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHH
Confidence 33577899999999999953
No 220
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=50.90 E-value=6.4 Score=40.00 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l~ 331 (439)
.|.=+++.|++|+|||. |++-++..+.
T Consensus 199 ~G~l~ii~G~pg~GKT~-lal~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTA-FALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHH
Confidence 46678999999999994 5555555443
No 221
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=50.79 E-value=7.6 Score=38.81 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.6
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3445678887 667789999999763
No 222
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=50.78 E-value=5.7 Score=39.43 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.9
Q ss_pred HhcCCcEEEEcCCCCCcce
Q 013623 302 VVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTl 320 (439)
+..|..+++.++||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 4478999999999999986
No 223
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.72 E-value=7.7 Score=38.70 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.9
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 6677789988 566789999999654
No 224
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=50.47 E-value=7.7 Score=38.99 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=18.8
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445678887 567789999999764
No 225
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=50.12 E-value=8 Score=38.30 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=19.9
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
..+..++.|.| ++.-++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566788987 667789999999654
No 226
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=50.07 E-value=7.9 Score=38.89 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.7
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++..++||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455678887 566779999999653
No 227
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=50.00 E-value=22 Score=34.28 Aligned_cols=15 Identities=13% Similarity=-0.020 Sum_probs=13.1
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
..++.+|.|+|||..
T Consensus 20 ~~Lf~Gp~G~GKtt~ 34 (305)
T 2gno_A 20 SILINGEDLSYPREV 34 (305)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999853
No 228
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.85 E-value=7.4 Score=34.98 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=30.5
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
..|.-+++.+++|+|||... +-++..+... +-.++++. +.+-..++.+.+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~-~~~~~~~~~~-----------~~~v~~~~-~e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFS-QQFLWNGLKM-----------GEPGIYVA-LEEHPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHH-HHHHHHHHHT-----------TCCEEEEE-SSSCHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHHHhc-----------CCeEEEEE-ccCCHHHHHHHHHHc
Confidence 35778999999999999643 3333333221 22455554 333445565555543
No 229
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=49.68 E-value=14 Score=35.62 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCCCCCHHHHHH-hhhHhcCC-----cEEEEcCCCCCcceeeh
Q 013623 277 DYMIESLKRQNFLRPSQIQAMA-FPPVVEGK-----SCILADQSGSGKTLAYL 323 (439)
Q Consensus 277 ~~Ll~aL~~~gf~~pTpIQ~~a-IP~iLsGr-----Dvli~ApTGSGKTlayl 323 (439)
..+.+-|+-.||. +++... +-..+.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677778777765 666543 44556553 59999999999997553
No 230
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.53 E-value=8 Score=39.35 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.9
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+.-++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677789988 566779999999764
No 231
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=49.39 E-value=8 Score=38.72 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=18.6
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++..++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445678887 667789999999654
No 232
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.26 E-value=13 Score=34.69 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=28.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.+|.++--.+.+++.|.+.= .. -...++++.+|+|+|||..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHH
Confidence 56888876788888776531 10 0123599999999999953
No 233
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=49.05 E-value=7.8 Score=38.84 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
..+..++.|.| |+.-++||||||...
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34556778988 566679999999663
No 234
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=48.94 E-value=7.9 Score=39.08 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=18.3
Q ss_pred HhhhHhcCCc--EEEEcCCCCCccee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLA 321 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTla 321 (439)
.+..++.|.| |+.-++||||||..
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 4455678887 56677999999965
No 235
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=48.92 E-value=8.1 Score=38.63 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=18.9
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455678887 567779999999763
No 236
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=48.80 E-value=7.9 Score=38.71 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=19.3
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+.-++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556778988 566779999999764
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=48.52 E-value=9.1 Score=36.99 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
++++++.+|+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 68999999999999853
No 238
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=48.47 E-value=7.7 Score=38.87 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=18.8
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4556778987 566779999999643
No 239
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=48.34 E-value=8 Score=38.97 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=18.4
Q ss_pred HhhhHhcCCc--EEEEcCCCCCccee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLA 321 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTla 321 (439)
.+..++.|.| |+..++||||||..
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 4455678887 66777999999965
No 240
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=48.21 E-value=8.2 Score=38.52 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=18.9
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++.-++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4455678887 566779999999764
No 241
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.69 E-value=8.1 Score=39.49 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
..+..++.|.| |+..++||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677788987 566779999999763
No 242
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=47.40 E-value=19 Score=36.44 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=38.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEE--------CCCChHHHH---HHhcC--CCcEEEEChHHHHHH
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT--------GGFRQKTQL---ENLQE--GVDVLIATPGRFMFL 410 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~--------Gg~~~~~q~---~~L~~--g~dILVaTPgrLldl 410 (439)
.+.++||.|+++..+..+.+.+...... ..+++..+. |+.+..++. ...+. .++|||+|- +
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGG-GSCCEEC------------------------------CCEEEEEC------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCc-ceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----c
Confidence 4568999999999999999999875321 124444443 344443332 23333 479999993 3
Q ss_pred HHhCCCCCCCcccEEEeCC
Q 013623 411 IKEGILQLINLRWYARTAS 429 (439)
Q Consensus 411 L~~~~l~L~~Lr~LVlDEA 429 (439)
+ ...+++..+++||.=+.
T Consensus 463 ~-~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 463 A-DEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp -----------CEEEEETC
T ss_pred h-hcCCCchhCCEEEEeCC
Confidence 3 34578888998886544
No 243
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=47.29 E-value=11 Score=47.42 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=32.2
Q ss_pred CHHHHHHHHHCCCCCCCHHHH----HHhhhHhcCCcEEEEcCCCCCcceeeh
Q 013623 276 SDYMIESLKRQNFLRPSQIQA----MAFPPVVEGKSCILADQSGSGKTLAYL 323 (439)
Q Consensus 276 ~~~Ll~aL~~~gf~~pTpIQ~----~aIP~iLsGrDvli~ApTGSGKTlayl 323 (439)
...+.+.+.+.|+. +++.+. +.+..+...+.+++.+|||||||.++-
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34566677777765 555542 233344567889999999999998764
No 244
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=47.24 E-value=6.5 Score=38.56 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCCCcce
Q 013623 302 VVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTl 320 (439)
+..|..+++.++||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 3478999999999999986
No 245
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=47.15 E-value=7.6 Score=37.37 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
...++++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467899999999999963
No 246
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=47.14 E-value=8.9 Score=38.92 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=18.9
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+.-++||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4455678887 667779999999664
No 247
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=47.11 E-value=7.5 Score=39.17 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=19.2
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| ++..++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566778987 566779999999764
No 248
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=46.77 E-value=7 Score=34.64 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.++.+++++++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 577899999999999864
No 249
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=46.72 E-value=30 Score=38.90 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=56.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHH---HHhcCC---CcEEEEChHHHHHHHHhCCCC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQEG---VDVLIATPGRFMFLIKEGILQ 417 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~---~~L~~g---~dILVaTPgrLldlL~~~~l~ 417 (439)
.+.++||+|++++-+..+...+... .++++..+.|+.+..... ..++.+ ++|||+|- .+ ...++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~----~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v~-~~GlD 571 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER----EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----IG-SEGRN 571 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT----TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----CT-TCSSC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----hh-hcCCC
Confidence 4568899999999999888888753 357899999998765443 333443 89999992 12 34678
Q ss_pred CCCcccEEEeCCc
Q 013623 418 LINLRWYARTASL 430 (439)
Q Consensus 418 L~~Lr~LVlDEAD 430 (439)
+..+.+||+-+..
T Consensus 572 l~~~~~VI~~d~p 584 (968)
T 3dmq_A 572 FQFASHMVMFDLP 584 (968)
T ss_dssp CTTCCEEECSSCC
T ss_pred cccCcEEEEecCC
Confidence 8888888876664
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=46.52 E-value=5.8 Score=37.59 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..|.-+++.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 44678899999999999864
No 251
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=46.50 E-value=8.2 Score=39.19 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=17.6
Q ss_pred hhHhcCCc--EEEEcCCCCCcceee
Q 013623 300 PPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 300 P~iLsGrD--vli~ApTGSGKTlay 322 (439)
..++.|.| ++.-++||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34668887 566789999999654
No 252
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=46.27 E-value=8.7 Score=39.30 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=18.5
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+.-++||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4445678887 566779999999653
No 253
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=46.07 E-value=17 Score=34.58 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
..++++.+|+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999963
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=45.83 E-value=19 Score=35.79 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=25.3
Q ss_pred cEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHH
Q 013623 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (439)
Q Consensus 307 Dvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrEL 357 (439)
=+++.+++|+|||.. ++.++...... ..+-+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~---------g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ---------YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH---------CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc---------CCCceEEEEeccchh
Confidence 488999999999964 34444433321 124467887765444
No 255
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=45.65 E-value=7.3 Score=34.82 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.2
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|+-+++++|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999863
No 256
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=45.49 E-value=9.1 Score=38.63 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=19.6
Q ss_pred HhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 298 aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
.+..++.|.| |+.-++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5667788987 566779999999654
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=45.32 E-value=7.3 Score=34.13 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.5
Q ss_pred hcCCcEEEEcCCCCCcce
Q 013623 303 VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTl 320 (439)
..|.-+++.+++|||||.
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457789999999999985
No 258
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=45.11 E-value=4.5 Score=40.90 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|+++.-+..++..+... ++.+..+.|+.....+...+ + ...+|||+|- ++ ...+++..
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~-~~GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cc-ccCCcccc
Confidence 457999999999998888887754 46677888887665443322 2 3478999993 33 24466777
Q ss_pred cccEE
Q 013623 421 LRWYA 425 (439)
Q Consensus 421 Lr~LV 425 (439)
+++||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 77766
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=45.08 E-value=7.7 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
++.+++++++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56799999999999863
No 260
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.81 E-value=22 Score=33.98 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.+|.++--++.+++.|...-+.. -...++++.+|+|+|||..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTR 52 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHH
Confidence 56888877888888876532110 1223599999999999864
No 261
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=44.68 E-value=5.3 Score=37.22 Aligned_cols=16 Identities=38% Similarity=0.383 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+.+++.+|+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 5799999999999964
No 262
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=44.12 E-value=14 Score=38.42 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=29.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhh--HhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP--VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~--iLsGrDvli~ApTGSGKTla 321 (439)
.+|.+++=....++.|.++= ..|.. ....+.. +-..+.+++.+|+|+|||+.
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i-~~~l~-~~~~~~~~g~~~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMV-ELPLR-HPALFKAIGVKPPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHT-HHHHH-CHHHHHHHTCCCCCEEEEECSTTSSHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHH-HHHhh-CHHHHHhcCCCCCCcEEEECcCCCCHHHH
Confidence 46888866666666665421 00000 0011111 12346899999999999963
No 263
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=43.95 E-value=7.4 Score=34.62 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.3
Q ss_pred HhcCCcEEEEcCCCCCcce
Q 013623 302 VVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTl 320 (439)
+..|+-+++++++|||||.
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 4467889999999999985
No 264
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=43.61 E-value=12 Score=38.47 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCcceee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTlay 322 (439)
..+..++.|.| |+.-++||||||...
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34555678887 667779999999764
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=43.55 E-value=7.7 Score=32.46 Aligned_cols=14 Identities=29% Similarity=0.499 Sum_probs=12.3
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
-+++++++|||||.
T Consensus 3 ~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 3 VILITGMPGSGKSE 16 (179)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999986
No 266
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=43.53 E-value=19 Score=36.88 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+-+++.+++|+|||..
T Consensus 98 ~vI~lvG~~GsGKTTt 113 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTT 113 (433)
T ss_dssp EEEEECCCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588899999999964
No 267
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=43.51 E-value=8.2 Score=33.06 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
++-+++++++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999864
No 268
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=43.27 E-value=8.5 Score=34.52 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|+=+++.+|+|+|||.
T Consensus 7 ~g~~i~l~GpsGsGKsT 23 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT 23 (208)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 46778999999999986
No 269
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=43.21 E-value=19 Score=36.56 Aligned_cols=68 Identities=7% Similarity=0.041 Sum_probs=43.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
+.++||.+|+++-+..++..++.. ++.+..+.|.... .....++ ...+|||+|- ++. ..+++.. ++
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~-----v~~-~GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSYD-TEYPKCKNGDWDFVITTD-----ISE-MGANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCCC-CCGGGSSSCCCSEEEESS-----CC----CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHHH-HHHhhccCCCceEEEECC-----hHH-hCeecCC-CE
Confidence 357899999999999999888765 4677777775322 1222333 3478999993 232 3456666 44
Q ss_pred EE
Q 013623 424 YA 425 (439)
Q Consensus 424 LV 425 (439)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 270
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=43.09 E-value=8.5 Score=33.08 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.-+++.++.|||||..
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999863
No 271
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=42.69 E-value=59 Score=34.62 Aligned_cols=75 Identities=11% Similarity=0.116 Sum_probs=52.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcC-C------------------------------CCceEEEEECCCChHHHHHHh
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKC-G------------------------------VPFRSMVVTGGFRQKTQLENL 393 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~-~------------------------------~~i~v~~l~Gg~~~~~q~~~L 393 (439)
+.++||.+|++.-+.++...+...... . ....+..++|+.+...+....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 468999999999999998888764321 0 012477889998876654333
Q ss_pred ---c-CCCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 394 ---Q-EGVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 394 ---~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
. ....|||+|. .+ ...+++..+++||
T Consensus 332 ~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI 361 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TL-AAGVNLPARTVII 361 (715)
T ss_dssp HHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEE
T ss_pred HHHHcCCCeEEEECh-----HH-hcccCCCceEEEE
Confidence 2 4589999994 22 3567888888765
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=42.08 E-value=6.1 Score=34.32 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=15.5
Q ss_pred hcCCcEEEEcCCCCCcce
Q 013623 303 VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTl 320 (439)
..|.-+++.+++|||||.
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 357779999999999986
No 273
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.63 E-value=24 Score=33.84 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=25.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcCC--cEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsGr--Dvli~ApTGSGKTla 321 (439)
.+|.++--.+.+++.|.. .+-.|+ ++++.+|+|+|||..
T Consensus 22 ~~~~~~~g~~~~~~~L~~---------------~i~~g~~~~~ll~Gp~G~GKTtl 62 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRK---------------FVDEGKLPHLLFYGPPGTGKTST 62 (340)
T ss_dssp SSGGGCCSCHHHHHHHHH---------------HHHTTCCCCEEEECSSSSSHHHH
T ss_pred CcHHHhcCcHHHHHHHHH---------------HHhcCCCceEEEECCCCCCHHHH
Confidence 456666446666666643 122343 489999999999854
No 274
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=41.62 E-value=7.8 Score=38.66 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
++-++|.+|||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999953
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.18 E-value=9.7 Score=33.32 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.=+.+.+|+|||||.
T Consensus 6 ~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 57778999999999986
No 276
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=40.98 E-value=24 Score=36.54 Aligned_cols=51 Identities=31% Similarity=0.482 Sum_probs=29.7
Q ss_pred ccccccCCCHHHHHHHHHCC--CCCCCHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~g--f~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
.+|+++.-.++.++.|.+.- +..|..++... +--.+.+++.+|+|+|||+.
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHH
Confidence 57999877777766665420 11111111100 00135699999999999964
No 277
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=40.93 E-value=12 Score=47.55 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=32.4
Q ss_pred CHHHHHHHHHCCCCCCCHHHHH-Hh---hhHhcCCcEEEEcCCCCCcceeeh
Q 013623 276 SDYMIESLKRQNFLRPSQIQAM-AF---PPVVEGKSCILADQSGSGKTLAYL 323 (439)
Q Consensus 276 ~~~Ll~aL~~~gf~~pTpIQ~~-aI---P~iLsGrDvli~ApTGSGKTlayl 323 (439)
...|.+.+.++|+. |++.|.. ++ ..+...+-+++.+|||||||.||-
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 45667777788875 5554432 33 334456679999999999999874
No 278
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=40.73 E-value=25 Score=39.37 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=44.0
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEE--------ECCCChHHHHH---HhcC--CCcEEEEChHHHHH
Q 013623 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--------TGGFRQKTQLE---NLQE--GVDVLIATPGRFMF 409 (439)
Q Consensus 343 ~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l--------~Gg~~~~~q~~---~L~~--g~dILVaTPgrLld 409 (439)
..+.++||.++++..+..+.+.+...... .++++..+ .|+.+..++.. .++. .++|||+|-
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l-~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~----- 702 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS----- 702 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTT-SSCCCEEC----------------------------CCSEEEEEC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccc-cccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----
Confidence 34679999999999999999999876321 22444444 34444444333 3333 479999993
Q ss_pred HHHhCCCCCCCcccEEEeCC
Q 013623 410 LIKEGILQLINLRWYARTAS 429 (439)
Q Consensus 410 lL~~~~l~L~~Lr~LVlDEA 429 (439)
++ ...+++..+++||.=+.
T Consensus 703 ~~-~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 703 VA-DEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp C-------CCCCSEEEEESC
T ss_pred ch-hcCCcchhCCEEEEeCC
Confidence 33 34578888999887554
No 279
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=40.35 E-value=22 Score=34.78 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=48.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEE-EEECCCChHHHHHHhcC-CCcEEEE----ChHHHHHHHHhCCCCCC
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVTGGFRQKTQLENLQE-GVDVLIA----TPGRFMFLIKEGILQLI 419 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~-~l~Gg~~~~~q~~~L~~-g~dILVa----TPgrLldlL~~~~l~L~ 419 (439)
.++||.|+++.-|..++..+... ++.+. .+.|. ... +..++. ..+|||+ |- ++ ...+++.
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~-----~~-~~GiDip 318 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG-----KL-TRGVDLP 318 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC-----CC-CCCCCCT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc-----hh-hccCccc
Confidence 57899999999999999888764 35555 44443 222 444544 4899999 62 22 3567888
Q ss_pred C-cccEEEeCC
Q 013623 420 N-LRWYARTAS 429 (439)
Q Consensus 420 ~-Lr~LVlDEA 429 (439)
. |++||.-..
T Consensus 319 ~~v~~VI~~~~ 329 (414)
T 3oiy_A 319 ERIKYVIFWGT 329 (414)
T ss_dssp TTCCEEEEESC
T ss_pred cccCEEEEECC
Confidence 8 898885444
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=40.14 E-value=11 Score=32.15 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCCcce
Q 013623 305 GKSCILADQSGSGKTL 320 (439)
Q Consensus 305 GrDvli~ApTGSGKTl 320 (439)
++.+++.+++|||||.
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5679999999999985
No 281
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=39.90 E-value=51 Score=33.86 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
.-+++.+++|+|||..
T Consensus 101 ~vIlivG~~G~GKTTt 116 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTT 116 (443)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 3588999999999964
No 282
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=39.82 E-value=7.6 Score=39.98 Aligned_cols=72 Identities=11% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHH---HHHhc-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q---~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
+.++||.|+++.-|..+...+... ++.+.+++|+.....+ ...+. ...+|||+|- ++ ...+++..
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l-~~GiDip~ 425 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VI-ARGIDVSQ 425 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hh-hcCCCccC
Confidence 458999999999999888887653 4567778877654332 22232 3478999994 33 34577878
Q ss_pred cccEEEe
Q 013623 421 LRWYART 427 (439)
Q Consensus 421 Lr~LVlD 427 (439)
+++||..
T Consensus 426 v~~VI~~ 432 (508)
T 3fho_A 426 VNLVVNY 432 (508)
T ss_dssp CCEEEC-
T ss_pred CCEEEEE
Confidence 8888743
No 283
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=39.66 E-value=9.3 Score=35.66 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=12.5
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+++++++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368999999999863
No 284
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=38.92 E-value=9.5 Score=37.36 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
..++++.+|+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 56899999999999953
No 285
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=38.74 E-value=31 Score=37.57 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=41.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEE--------ECCCChHHHHH---HhcC--CCcEEEEChHHHHHH
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--------TGGFRQKTQLE---NLQE--GVDVLIATPGRFMFL 410 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l--------~Gg~~~~~q~~---~L~~--g~dILVaTPgrLldl 410 (439)
.+.++||.|+++..+..+.+.++..... .++++..+ .|+.+...+.. ..+. .++|||+|- +
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~-~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTT-CSCCCEEC----------------------------CCSEEEEEC-----C
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCccc-ccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----c
Confidence 4578999999999999999999875321 12333333 34444443322 3333 479999993 3
Q ss_pred HHhCCCCCCCcccEEEeCC
Q 013623 411 IKEGILQLINLRWYARTAS 429 (439)
Q Consensus 411 L~~~~l~L~~Lr~LVlDEA 429 (439)
+ ...+++..+++||.=+.
T Consensus 704 ~-~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 704 A-DEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp --------CCCSEEEEESC
T ss_pred h-hcCCCchhCCEEEEeCC
Confidence 3 34578888998886544
No 286
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=38.49 E-value=56 Score=33.83 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=49.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhhcC---CCCceEEEEECCCCh--HHHHHHhcCC-Cc---EEEEChHHHHHHHHhC
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVTGGFRQ--KTQLENLQEG-VD---VLIATPGRFMFLIKEG 414 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~k~---~~~i~v~~l~Gg~~~--~~q~~~L~~g-~d---ILVaTPgrLldlL~~~ 414 (439)
.+.++||.|++++-|..++..+..+... ...-.+..++|.... ...+..+.++ .+ |||+| +++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-hc
Confidence 4578999999999999999999876421 112235666776643 1223333332 23 77777 222 23
Q ss_pred CCCCCCcccEEEeCC
Q 013623 415 ILQLINLRWYARTAS 429 (439)
Q Consensus 415 ~l~L~~Lr~LVlDEA 429 (439)
.+++..+++||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 466777777777655
No 287
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=38.32 E-value=12 Score=33.96 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.4
Q ss_pred hcCCcEEEEcCCCCCcce
Q 013623 303 VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTl 320 (439)
-.|+=+.+.+|+|+|||.
T Consensus 21 ~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -CCCCEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 367889999999999985
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=38.05 E-value=11 Score=33.96 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHH
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQ 332 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~ 332 (439)
|-++++||+|+|||. ++..+..
T Consensus 2 RpIVi~GPSG~GK~T-----l~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKST-----LLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHH-----HHHHHHH
T ss_pred CEEEEECCCCCCHHH-----HHHHHHH
Confidence 558999999999985 4555544
No 289
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=37.99 E-value=10 Score=37.53 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=12.2
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
++|++|||||||..
T Consensus 13 i~i~GptgsGKt~l 26 (316)
T 3foz_A 13 IFLMGPTASGKTAL 26 (316)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 78899999999953
No 290
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.73 E-value=10 Score=37.59 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.0
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+=++|.+|||||||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3478899999999954
No 291
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=37.61 E-value=24 Score=34.03 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999864
No 292
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=37.58 E-value=9.5 Score=38.03 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCCccee
Q 013623 303 VEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTla 321 (439)
..|.-+++.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4677899999999999863
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=37.30 E-value=12 Score=32.67 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+..++++++.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999864
No 294
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=37.03 E-value=15 Score=36.85 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=15.4
Q ss_pred cCCc--EEEEcCCCCCcceee
Q 013623 304 EGKS--CILADQSGSGKTLAY 322 (439)
Q Consensus 304 sGrD--vli~ApTGSGKTlay 322 (439)
.|.+ ++.-++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 688999999999653
No 295
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=37.03 E-value=9.4 Score=36.42 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
+.+++.+|+|+|||.
T Consensus 37 ~~lLl~GppGtGKT~ 51 (293)
T 3t15_A 37 LILGIWGGKGQGKSF 51 (293)
T ss_dssp SEEEEEECTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 578999999999996
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=37.00 E-value=11 Score=31.95 Aligned_cols=15 Identities=27% Similarity=0.249 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+++.+++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 378999999999863
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=36.70 E-value=12 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCCCcce
Q 013623 303 VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTl 320 (439)
+.|+=+++.+|+|+|||.
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 367889999999999986
No 298
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=36.64 E-value=13 Score=33.20 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=15.9
Q ss_pred hHhcCCcEEEEcCCCCCccee
Q 013623 301 PVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 301 ~iLsGrDvli~ApTGSGKTla 321 (439)
.+-.|+=+.+.+|+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 466788899999999999863
No 299
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=36.46 E-value=9.3 Score=35.84 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
..+++.+|+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3799999999999954
No 300
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=36.25 E-value=30 Score=39.26 Aligned_cols=76 Identities=22% Similarity=0.193 Sum_probs=49.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhc-CCCcEEEEChHHHHHHHHhCCCCCCCc-c
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINL-R 422 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~-~g~dILVaTPgrLldlL~~~~l~L~~L-r 422 (439)
+.++||.|+|+.-|..++..++.. +++..++|+.. ..+..++ ...+|||||... .+++. ..+++..| +
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~-Tdv~~-rGIDip~VI~ 344 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHY-YGTLV-RGLDLPERIR 344 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSS--HHHHHHHHTSCSEEEEECC--------CCSCCTTTCC
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccHH--HHHHHHHcCCCcEEEEecCC-CCeeE-eccccCCccc
Confidence 457999999999988887766543 67788888764 2333333 458999993100 03343 47889995 9
Q ss_pred cEEEeCCc
Q 013623 423 WYARTASL 430 (439)
Q Consensus 423 ~LVlDEAD 430 (439)
+||.=.+-
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 88876554
No 301
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=36.22 E-value=17 Score=41.60 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=26.4
Q ss_pred EEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHH
Q 013623 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (439)
Q Consensus 309 li~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrE 356 (439)
+|.|..|||||.+.+-=+.+.+... ..+.++|+|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~---------~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA---------PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC---------TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC---------CCCCcEEEEecCcc
Confidence 7889999999986544444444321 23467899988774
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=36.15 E-value=13 Score=32.89 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|+-+++.+++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999853
No 303
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=36.08 E-value=15 Score=39.79 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=19.7
Q ss_pred HHhhhHhcCCc--EEEEcCCCCCccee
Q 013623 297 MAFPPVVEGKS--CILADQSGSGKTLA 321 (439)
Q Consensus 297 ~aIP~iLsGrD--vli~ApTGSGKTla 321 (439)
..+..++.|.| |+.-++||||||..
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhc
Confidence 36677889987 56667999999965
No 304
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=35.86 E-value=33 Score=35.78 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=29.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhc------CCcEEEEcCCCCCccee
Q 013623 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE------GKSCILADQSGSGKTLA 321 (439)
Q Consensus 267 ~~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLs------GrDvli~ApTGSGKTla 321 (439)
..+|+++.-.++....|.+.- ....-|.++. .+.+++.+|+|+|||+.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv-------~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 80 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHH-------HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHH-------HHhhchhhhhhccCCCCceEEEECCCCCCHHHH
Confidence 357999877777766665421 1111122221 24599999999999964
No 305
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=35.75 E-value=30 Score=33.05 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=25.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC---CcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG---rDvli~ApTGSGKTla 321 (439)
.+|.++--.+.+++.|... +..+ +-+++.+|+|+|||..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~---------------l~~~~~~~~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSI 54 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHH---------------HHHTCCCSEEEEESCTTSSHHHH
T ss_pred CchhhccCcHHHHHHHHHH---------------HHhCCCCeEEEEECCCCCCHHHH
Confidence 4577765566666666431 1122 3479999999999954
No 306
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=35.56 E-value=24 Score=37.21 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=17.2
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..|+.+++.+|+|+|||..
T Consensus 57 i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHH
Confidence 45789999999999999853
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=35.51 E-value=14 Score=32.37 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=12.7
Q ss_pred CcEEEEcCCCCCcce
Q 013623 306 KSCILADQSGSGKTL 320 (439)
Q Consensus 306 rDvli~ApTGSGKTl 320 (439)
+=+.+.+|+|+|||.
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 447899999999985
No 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=35.32 E-value=13 Score=33.30 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=17.1
Q ss_pred HhcCCcEEEEcCCCCCcceee
Q 013623 302 VVEGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTlay 322 (439)
+-.|.-+.+.+|+|+|||...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHH
Confidence 346788999999999998643
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=35.17 E-value=11 Score=32.62 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCcceeeh
Q 013623 304 EGKSCILADQSGSGKTLAYL 323 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlayl 323 (439)
.|.=+.+++++|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46668899999999986543
No 310
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=35.02 E-value=8.1 Score=37.18 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---c-CCCcEEEEChHHHHHHHHhCCCCCCC
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~-~g~dILVaTPgrLldlL~~~~l~L~~ 420 (439)
..++||.|++++-+..+.+.++.. ++.+..++|+.....+...+ . ....|||+|. .+. ..+++..
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gldi~~ 327 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhh-cCCCccc
Confidence 457899999999988888777653 45677778876554443222 2 2477999984 222 2345555
Q ss_pred cccEEE
Q 013623 421 LRWYAR 426 (439)
Q Consensus 421 Lr~LVl 426 (439)
++++|.
T Consensus 328 ~~~Vi~ 333 (394)
T 1fuu_A 328 VSLVIN 333 (394)
T ss_dssp ------
T ss_pred CCEEEE
Confidence 555553
No 311
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=34.98 E-value=13 Score=31.38 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+++.++.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999863
No 312
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=34.70 E-value=14 Score=33.94 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=15.9
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+-.|+=+++.+|+|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45688899999999999863
No 313
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.51 E-value=33 Score=31.85 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=25.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCCHHHHHHhhhHhcC--CcEEEEcCCCCCccee
Q 013623 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLA 321 (439)
Q Consensus 268 ~sF~elgL~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG--rDvli~ApTGSGKTla 321 (439)
..|.++--.+.+++.|.+. +..+ .++++.+|+|+|||..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~---------------l~~~~~~~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQI---------------AKDGNMPHMIISGMPGIGKTTS 58 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHH---------------HHSCCCCCEEEECSTTSSHHHH
T ss_pred CCHHHHHCCHHHHHHHHHH---------------HHcCCCCeEEEECcCCCCHHHH
Confidence 4577765556666655431 1122 3599999999999953
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=34.26 E-value=12 Score=31.99 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++++++|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356789999999999864
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=34.12 E-value=16 Score=33.05 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=11.7
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|+=+.+.+|+|+|||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999864
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=34.07 E-value=10 Score=32.65 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++.++.|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999853
No 317
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=34.07 E-value=30 Score=34.97 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCCcceee
Q 013623 305 GKSCILADQSGSGKTLAY 322 (439)
Q Consensus 305 GrDvli~ApTGSGKTlay 322 (439)
|.-+++.+++|+|||...
T Consensus 178 Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLC 195 (400)
T ss_dssp TSEEEEEESTTSSHHHHH
T ss_pred CcEEEEEcCCCCChHHHH
Confidence 356899999999999643
No 318
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=33.81 E-value=59 Score=33.14 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.1
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.++-+++.+++|+|||..
T Consensus 97 ~~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345578889999999864
No 319
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=32.89 E-value=53 Score=39.51 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=32.5
Q ss_pred CcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 306 rDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
+-+.+.+|.|||||... ++++..... .+-.|+++.+-.+|-... ++++.
T Consensus 1432 ~~iei~g~~~sGkttl~-~~~~a~~~~-----------~g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLT-LQVIAAAQR-----------EGKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHHH-----------TTCCEEEECTTSCCCHHH---HHHTT
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHHHHh-----------cCCeEEEEecCCCCCHHH---HHHcC
Confidence 56899999999999754 334433322 356788888877775544 55553
No 320
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=32.66 E-value=19 Score=33.95 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=18.1
Q ss_pred hhHhcCCcEEEEcCCCCCccee
Q 013623 300 PPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 300 P~iLsGrDvli~ApTGSGKTla 321 (439)
...+.|+.+++.+++|+|||..
T Consensus 43 ~~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 43 KPYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHHHTTCCEEEECSTTSCHHHH
T ss_pred hhhcCCCEEEEECCCCCCHHHH
Confidence 3344699999999999999864
No 321
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=32.52 E-value=14 Score=36.50 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=13.1
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+++++|||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999963
No 322
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=32.39 E-value=14 Score=41.01 Aligned_cols=52 Identities=17% Similarity=0.412 Sum_probs=33.3
Q ss_pred ccccccccCCCHHHHHHHHHC-CC--CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcce
Q 013623 266 SRKSFKELGCSDYMIESLKRQ-NF--LRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~-gf--~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTl 320 (439)
+..+|.+++.-+++.+.|.+. -+ ..|..++... +-..+.+|+.+|+|+|||+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchH
Confidence 456899999889999888664 21 1111111100 1123579999999999995
No 323
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=32.08 E-value=26 Score=35.73 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|.=+++.|++|+|||. |++-++.++
T Consensus 196 ~G~liiIaG~pG~GKTt-lal~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTA-FALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHH-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHH
Confidence 45668999999999995 445544444
No 324
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=32.06 E-value=19 Score=37.73 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCCcceee
Q 013623 304 EGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlay 322 (439)
.+.+++|.+.||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4679999999999999654
No 325
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=32.04 E-value=45 Score=32.04 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
..|.=+++.|++|+|||. |++-++..+
T Consensus 66 ~~G~l~li~G~pG~GKTt-l~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTA-FALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHH-HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHH-HHHHHHHHH
Confidence 346679999999999995 444444443
No 326
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.70 E-value=15 Score=36.59 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.8
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-++|++|||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 478999999999963
No 327
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=31.56 E-value=15 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|+-+++.++||+|||.
T Consensus 33 ~g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSE 49 (205)
T ss_dssp TTEEEEEECCCTTTTHH
T ss_pred CCEEEEEECCCCCCHHH
Confidence 46679999999999974
No 328
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=31.46 E-value=16 Score=34.18 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=29.8
Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHhhhHhcC----CcEEEEcCCCCCcceeehhHHHHHH
Q 013623 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 276 ~~~Ll~aL~~~gf~~pTpIQ~~aIP~iLsG----rDvli~ApTGSGKTlaylLPiL~~l 330 (439)
...|++-|+-.|+. +... ..++..++.+ +.+++.+|.|+|||... ..++..+
T Consensus 27 w~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 27 WRPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp SHHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 34555656533432 2222 3344445544 35999999999999543 4555554
No 329
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=31.20 E-value=67 Score=34.17 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=49.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCC-------------------------CCceEEEEECCCChHHHHHHh---c-C
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCG-------------------------VPFRSMVVTGGFRQKTQLENL---Q-E 395 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~-------------------------~~i~v~~l~Gg~~~~~q~~~L---~-~ 395 (439)
+.++||.+|++.-+..+...+....... ....+..++|+.....+.... . .
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 4578999999999999888877542100 012466788888876654332 2 4
Q ss_pred CCcEEEEChHHHHHHHHhCCCCCCCcccEE
Q 013623 396 GVDVLIATPGRFMFLIKEGILQLINLRWYA 425 (439)
Q Consensus 396 g~dILVaTPgrLldlL~~~~l~L~~Lr~LV 425 (439)
...|||+|.- -...+++..+++||
T Consensus 322 ~~~vlvaT~~------l~~Gidip~~~~VI 345 (702)
T 2p6r_A 322 NIKVVVATPT------LAAGVNLPARRVIV 345 (702)
T ss_dssp SCCEEEECST------TTSSSCCCBSEEEE
T ss_pred CCeEEEECcH------HhccCCCCceEEEE
Confidence 5899999952 23456777777644
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=31.13 E-value=14 Score=31.60 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+.-+++.+++|||||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999864
No 331
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=30.77 E-value=16 Score=31.91 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+++.++.|||||.
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46779999999999985
No 332
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=30.57 E-value=18 Score=32.14 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=20.2
Q ss_pred CHHHHHHhhhHhcCCcEEEEcCCCCCccee
Q 013623 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 292 TpIQ~~aIP~iLsGrDvli~ApTGSGKTla 321 (439)
++.+... ..+..|.-+++.++.|||||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 3444443 3345677899999999999853
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=30.40 E-value=17 Score=31.56 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.1
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+-+++.+++|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3478899999999863
No 334
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=30.10 E-value=17 Score=31.07 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.3
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
.+|.+|+|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999965
No 335
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=30.07 E-value=19 Score=38.28 Aligned_cols=14 Identities=14% Similarity=0.397 Sum_probs=13.3
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
++++.+|+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999995
No 336
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=29.73 E-value=18 Score=32.28 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.2
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.|.+++|||||.
T Consensus 21 ~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST 37 (208)
T ss_dssp SCEEEEEECCTTSCTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45668899999999985
No 337
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=29.56 E-value=13 Score=36.77 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.4
Q ss_pred cEEEEcCCCCCcceee
Q 013623 307 SCILADQSGSGKTLAY 322 (439)
Q Consensus 307 Dvli~ApTGSGKTlay 322 (439)
-+++++|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999654
No 338
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=29.21 E-value=17 Score=31.31 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.6
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
=.++.+++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 468899999999964
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=29.09 E-value=19 Score=31.02 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.-+++.++.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567799999999999863
No 340
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=29.00 E-value=17 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCCcceee
Q 013623 304 EGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlay 322 (439)
.|.=+++.+++|+|||...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4677899999999999643
No 341
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=28.90 E-value=36 Score=33.68 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~~l 330 (439)
.|+-+++.+++|+|||... +-++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~ 87 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAA 87 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4678999999999999643 3344333
No 342
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=28.63 E-value=17 Score=32.01 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++.+++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 567799999999999853
No 343
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.58 E-value=19 Score=31.76 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.6
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
.+.+.+|+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999863
No 344
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=28.54 E-value=1.7e+02 Score=33.22 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=23.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhh
Q 013623 344 GSPRVVILAPTAELASQVLSNCRSLS 369 (439)
Q Consensus 344 ~gp~aLILvPTrELA~Qi~~~l~~L~ 369 (439)
.+.++||+|.+++-|..++..+.++.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 45789999999999999999998876
No 345
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=28.51 E-value=20 Score=34.20 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+.-+++++++|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34589999999999853
No 346
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=28.48 E-value=84 Score=29.02 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=19.5
Q ss_pred ChHHHHHHHHhCCCCCCCcccEEEeCC
Q 013623 403 TPGRFMFLIKEGILQLINLRWYARTAS 429 (439)
Q Consensus 403 TPgrLldlL~~~~l~L~~Lr~LVlDEA 429 (439)
||..+.+.|-+..++++++.++-+||=
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr 70 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADER 70 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeec
Confidence 344555566667788888999999983
No 347
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=28.36 E-value=17 Score=31.74 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.+.-+++.++.|||||.
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 45668999999999985
No 348
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=28.31 E-value=19 Score=31.65 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+-++++++.|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999863
No 349
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=28.28 E-value=17 Score=31.35 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+.-++++++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999863
No 350
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=28.16 E-value=21 Score=33.01 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57788999999999985
No 351
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=28.02 E-value=27 Score=35.62 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
...++++.+|+|+|||..
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 346899999999999964
No 352
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=27.86 E-value=20 Score=22.41 Aligned_cols=18 Identities=44% Similarity=0.802 Sum_probs=8.4
Q ss_pred CCCCCCCCCCccccCCCC
Q 013623 63 GGDGGGGGYSRTPLETAG 80 (439)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~ 80 (439)
||+|+|+|-.+-+--||+
T Consensus 1 ggggggggaashqrvtpd 18 (29)
T 1cn3_F 1 GGGGGGGGAASHQRVTPD 18 (29)
T ss_dssp CCCCCCSTTTCCCCCEEG
T ss_pred CCCCCCCccccccccCch
Confidence 344555555444444443
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=27.45 E-value=18 Score=37.07 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.1
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
++|.+|||||||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 68899999999953
No 354
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=27.37 E-value=13 Score=32.82 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=17.2
Q ss_pred hhhHhcCCcEEEEcCCCCCcce
Q 013623 299 FPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 299 IP~iLsGrDvli~ApTGSGKTl 320 (439)
+|.+-.+.-+.+.+++|||||.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHH
T ss_pred cccCCCCeEEEEECCCCCCHHH
Confidence 3445566778899999999985
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=27.37 E-value=19 Score=30.84 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=12.3
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
-+++.++.|||||.
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 37899999999985
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=27.14 E-value=22 Score=30.40 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=13.1
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
.+++.++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 689999999999853
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.09 E-value=19 Score=31.65 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+.-+++.++.|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999863
No 358
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.89 E-value=53 Score=36.44 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+.+|+.+|+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6799999999999964
No 359
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=26.82 E-value=42 Score=38.54 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=39.8
Q ss_pred hcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
+.|.+ +|.|.-|||||.+-.-=++..+..............--+.|+|+=|+.-|.+..+.+...
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 34555 999999999997765555655542100000000112347899999998888877666554
No 360
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.79 E-value=34 Score=32.92 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++.+++|+|||..
T Consensus 106 ~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHhHH
Confidence 457799999999999964
No 361
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=26.78 E-value=22 Score=31.66 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCCcceee
Q 013623 303 VEGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTlay 322 (439)
-.|.-+++.+++|+|||...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 35678999999999999643
No 362
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=26.71 E-value=30 Score=36.90 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCCcceeehhHHHH
Q 013623 304 EGKSCILADQSGSGKTLAYLLPVIQ 328 (439)
Q Consensus 304 sGrDvli~ApTGSGKTlaylLPiL~ 328 (439)
...+++|.+.||||||.+.-.-++.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999754333333
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=26.44 E-value=22 Score=30.72 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.-+++.++.|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456799999999999853
No 364
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=26.39 E-value=23 Score=30.06 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+++++.++.|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999864
No 365
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.39 E-value=24 Score=31.50 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+..+++.++.|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999853
No 366
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=26.29 E-value=22 Score=32.20 Aligned_cols=14 Identities=50% Similarity=1.021 Sum_probs=12.5
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
++++++.|||||+.
T Consensus 8 ~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 8 CLITGTPGSGKTLK 21 (199)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 58999999999984
No 367
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=25.54 E-value=26 Score=29.86 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=10.4
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.-+++.++.|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356689999999999863
No 368
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.32 E-value=22 Score=38.51 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
...++++.+|+|+|||..
T Consensus 200 ~~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 346899999999999964
No 369
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=25.30 E-value=22 Score=30.78 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++.++.|||||..
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466799999999999863
No 370
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.29 E-value=10 Score=41.88 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=31.1
Q ss_pred ccccccccCCCHHHHHHHHHCC-C--CCCCHHHHHHhhhHhcCCcEEEEcCCCCCcce
Q 013623 266 SRKSFKELGCSDYMIESLKRQN-F--LRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320 (439)
Q Consensus 266 s~~sF~elgL~~~Ll~aL~~~g-f--~~pTpIQ~~aIP~iLsGrDvli~ApTGSGKTl 320 (439)
+..+|.+++-.+.+.+.|.+.- + ..+..... -.+..++.+++.+|+|+|||.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~---~~~~~~~~vLL~GppGtGKT~ 526 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK---FGMTPSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTC---CCCCCCCCCCCBCCTTSSHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHh---cCCCCCceeEEECCCCCCHHH
Confidence 3457888776667777775531 1 11110000 012356789999999999997
No 371
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=25.28 E-value=22 Score=32.96 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|||||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57788999999999985
No 372
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=25.20 E-value=20 Score=31.67 Aligned_cols=19 Identities=26% Similarity=0.150 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCCCccee
Q 013623 303 VEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTla 321 (439)
-.|.=+.+.+|+|+|||..
T Consensus 23 ~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp ESSEEEEEEESTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3567799999999999853
No 373
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=25.04 E-value=1.6e+02 Score=32.84 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=38.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh---cCCCcEEEECh
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---QEGVDVLIATP 404 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L---~~g~dILVaTP 404 (439)
+-.+||.|.|++-+..+...+.+. ++.+.++.|..+..+..... +.+ .|+|||.
T Consensus 441 gqpvLVft~sie~se~Ls~~L~~~-----gi~~~vLnak~~~rEa~iia~agr~G-~VtIATn 497 (853)
T 2fsf_A 441 GQPVLVGTISIEKSELVSNELTKA-----GIKHNVLNAKFHANEAAIVAQAGYPA-AVTIATN 497 (853)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHT-----TCCCEECCTTCHHHHHHHHHTTTSTT-CEEEEES
T ss_pred CCCEEEEECcHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCC-eEEEecc
Confidence 446899999999999998888753 57788888886544332211 334 7999995
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=24.97 E-value=22 Score=30.50 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999863
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=24.93 E-value=24 Score=31.20 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999853
No 376
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=24.87 E-value=24 Score=30.51 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.3
Q ss_pred cEEEEcCCCCCcce
Q 013623 307 SCILADQSGSGKTL 320 (439)
Q Consensus 307 Dvli~ApTGSGKTl 320 (439)
-+++.++.|||||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999985
No 377
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.85 E-value=27 Score=43.89 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.2
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..++.+++++|||+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 34689999999999999964
No 378
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=24.85 E-value=23 Score=32.26 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCCcce
Q 013623 305 GKSCILADQSGSGKTL 320 (439)
Q Consensus 305 GrDvli~ApTGSGKTl 320 (439)
+.-+++.+++|||||.
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4679999999999985
No 379
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=24.78 E-value=25 Score=31.34 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
...+++.++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35789999999999853
No 380
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=24.75 E-value=24 Score=31.71 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
+.-+++.+++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999863
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=24.68 E-value=24 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+-+++.++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999863
No 382
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=24.44 E-value=22 Score=36.67 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
.+++++.+|+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 47899999999999863
No 383
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.21 E-value=23 Score=30.18 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.0
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+++.++.|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999863
No 384
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.15 E-value=25 Score=35.95 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
.++++.+|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4799999999999963
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=24.12 E-value=26 Score=31.70 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.+..+++.++.|||||.
T Consensus 15 ~~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34679999999999985
No 386
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=23.96 E-value=22 Score=31.28 Aligned_cols=17 Identities=29% Similarity=0.135 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
|.-+.+.+++|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44578999999999863
No 387
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=23.89 E-value=23 Score=34.88 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=12.4
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
.++.++||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999975
No 388
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=23.66 E-value=26 Score=31.01 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999854
No 389
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=23.55 E-value=23 Score=33.11 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=18.5
Q ss_pred hhHhcCCcEEEEcCCCCCcceee
Q 013623 300 PPVVEGKSCILADQSGSGKTLAY 322 (439)
Q Consensus 300 P~iLsGrDvli~ApTGSGKTlay 322 (439)
+-+..|.-+++.+++|+|||...
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHH
Confidence 34557888999999999999643
No 390
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=23.55 E-value=64 Score=30.93 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.6
Q ss_pred EEEEcCCCCCcce
Q 013623 308 CILADQSGSGKTL 320 (439)
Q Consensus 308 vli~ApTGSGKTl 320 (439)
+++.++.|+|||.
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 6789999999996
No 391
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=23.52 E-value=30 Score=29.64 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
.-+++.++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999864
No 392
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=23.43 E-value=30 Score=30.95 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCCccee
Q 013623 305 GKSCILADQSGSGKTLA 321 (439)
Q Consensus 305 GrDvli~ApTGSGKTla 321 (439)
|.-+.+.+++|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 34578999999999864
No 393
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=23.40 E-value=29 Score=31.86 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67888999999999985
No 394
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.35 E-value=98 Score=33.01 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=50.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHhhhcC---------------C-------------CCceEEEEECCCChHHHHHHh---
Q 013623 345 SPRVVILAPTAELASQVLSNCRSLSKC---------------G-------------VPFRSMVVTGGFRQKTQLENL--- 393 (439)
Q Consensus 345 gp~aLILvPTrELA~Qi~~~l~~L~k~---------------~-------------~~i~v~~l~Gg~~~~~q~~~L--- 393 (439)
+.++||.+|++.-+..+...+...... . ....+..++|+.....+....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 457999999999999988887754220 0 012377888988876654322
Q ss_pred c-CCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 394 Q-EGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 394 ~-~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+ ...+|||+|.- + ...+++..+++| |+
T Consensus 317 ~~g~~~vlvaT~~-----l-~~Gvdip~~~~V-I~ 344 (720)
T 2zj8_A 317 RKGIIKAVVATPT-----L-SAGINTPAFRVI-IR 344 (720)
T ss_dssp HTTSSCEEEECST-----T-GGGCCCCBSEEE-EC
T ss_pred HCCCCeEEEECcH-----h-hccCCCCceEEE-Ec
Confidence 2 34789999942 2 345677777754 44
No 395
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=23.35 E-value=26 Score=31.03 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
.-+.+.+++|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999754
No 396
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=23.24 E-value=27 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
+-+++.++.|||||..
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999864
No 397
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=23.19 E-value=1.8e+02 Score=26.25 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=35.1
Q ss_pred EEEcCcH-HHHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCcccEEEe
Q 013623 349 VILAPTA-ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRWYART 427 (439)
Q Consensus 349 LILvPTr-ELA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~LVlD 427 (439)
+++.++. +|+....+.+..+.+. .+. +..+.||..... +.+.|....++.+++.++-+|
T Consensus 4 ~~~~~~~~~l~~~aA~~l~~~i~~-~~~-~i~ls~G~T~~~------------------~~~~L~~~~~~~~~v~v~~ld 63 (234)
T 2ri0_A 4 TIKVKNKTEGSKVAFRMLEEEITF-GAK-TLGLATGSTPLE------------------LYKEIRESHLDFSDMVSINLD 63 (234)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHT-TCC-EEEECCSSTTHH------------------HHHHHHTSCCCCTTCEEEESE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHh-CCC-EEEEcCCCCHHH------------------HHHHHHhcCCChhheEEEeCe
Confidence 4556665 4777777777766652 223 556666664443 444444444566667777777
Q ss_pred C
Q 013623 428 A 428 (439)
Q Consensus 428 E 428 (439)
|
T Consensus 64 E 64 (234)
T 2ri0_A 64 E 64 (234)
T ss_dssp E
T ss_pred e
Confidence 6
No 398
>2fhz_B Colicin-E5; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.243.1.2 PDB: 2a8k_A 3ao9_A 2dfx_E 2djh_A* 3vj7_A*
Probab=23.04 E-value=34 Score=28.17 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.1
Q ss_pred ccCCCCceEeecCCCCCceEEeCcCCC
Q 013623 75 PLETAGACELIDNDTGEKVIVWGGTDD 101 (439)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
-..-||.|++++..|||-|-++.--|-
T Consensus 66 ~Y~~~g~YVVvndrtGeivQiS~k~d~ 92 (108)
T 2fhz_B 66 VYGSPGKYVVVNDRTGEVTQISDKTDP 92 (108)
T ss_dssp EEEETTEEEEEETTTCBEEEECCTTCT
T ss_pred EecCCCCEEEEeCCCccEEEeccCCCC
Confidence 344679999999999999999876554
No 399
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=22.92 E-value=69 Score=36.64 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=50.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEE-EEECCCChHHHHHHhc-CCCcEEEE----ChHHHHHHHHhCCCCCC
Q 013623 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVTGGFRQKTQLENLQ-EGVDVLIA----TPGRFMFLIKEGILQLI 419 (439)
Q Consensus 346 p~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~-~l~Gg~~~~~q~~~L~-~g~dILVa----TPgrLldlL~~~~l~L~ 419 (439)
.++||.|++++-+..++..+... ++.+. .+.|. ... +..++ ...+|||| | +++ ...+++.
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~-----g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~T-----dvl-arGIDip 375 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYY-----GKL-TRGVDLP 375 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT-----TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTH-----HHH-CCSCCCT
T ss_pred CCEEEEECcHHHHHHHHHHHHhC-----CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCC-----Cee-EecCcCC
Confidence 57899999999999999888764 45565 55552 222 44444 45899999 6 333 4568899
Q ss_pred C-cccEEEeCC
Q 013623 420 N-LRWYARTAS 429 (439)
Q Consensus 420 ~-Lr~LVlDEA 429 (439)
. |++||.=+.
T Consensus 376 ~~V~~VI~~d~ 386 (1104)
T 4ddu_A 376 ERIKYVIFWGT 386 (1104)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEEEECC
Confidence 9 999887555
No 400
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.81 E-value=30 Score=32.33 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999985
No 401
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=22.65 E-value=29 Score=30.36 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.-+++.++.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 567799999999999863
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=22.58 E-value=28 Score=32.59 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.4
Q ss_pred HhcCCcEEEEcCCCCCccee
Q 013623 302 VVEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 302 iLsGrDvli~ApTGSGKTla 321 (439)
+..|.=+++.+++|+|||..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHH
Confidence 33677899999999999964
No 403
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.54 E-value=31 Score=32.42 Aligned_cols=17 Identities=41% Similarity=0.878 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67889999999999985
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=22.52 E-value=28 Score=31.80 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778899999999985
No 405
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=22.50 E-value=29 Score=30.28 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.+.-+++.++.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467799999999999863
No 406
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=22.47 E-value=32 Score=31.43 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788999999999985
No 407
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.96 E-value=2e+02 Score=24.95 Aligned_cols=70 Identities=9% Similarity=-0.018 Sum_probs=21.0
Q ss_pred hhhHhcCCcEEEEcCCCCCcceeehhHHHHHHHHHHhh-ccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhh
Q 013623 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (439)
Q Consensus 299 IP~iLsGrDvli~ApTGSGKTlaylLPiL~~l~~~~~~-~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L 368 (439)
++..+.|-.+-+.+..|-|=|+.+.+|+...-...... ........+.++||+=........+...+..+
T Consensus 14 ~~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 14 VPRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp CC---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred ccccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 45556677888899999999999999975433221111 11122234568888888888777777777654
No 408
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=21.95 E-value=30 Score=29.08 Aligned_cols=15 Identities=27% Similarity=0.171 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999853
No 409
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=21.90 E-value=28 Score=33.87 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|+-+.+.+|+|+|||.
T Consensus 125 ~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp TCSEEEEECSSSSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 68889999999999985
No 410
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=21.85 E-value=27 Score=30.49 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+.+.+++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999864
No 411
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=21.76 E-value=78 Score=29.24 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=19.5
Q ss_pred ChHHHHHHHHhCCCCCCCcccEEEeC
Q 013623 403 TPGRFMFLIKEGILQLINLRWYARTA 428 (439)
Q Consensus 403 TPgrLldlL~~~~l~L~~Lr~LVlDE 428 (439)
||..+.+.|.+..++++++.++-+||
T Consensus 45 tp~~~y~~L~~~~i~w~~v~~f~~DE 70 (232)
T 3lhi_A 45 SPIAFFNALSQKDLDWKNVGITLADE 70 (232)
T ss_dssp TTHHHHHHHHTSCCCGGGEEEEESEE
T ss_pred CHHHHHHHHHhcCCCchheEEEEeee
Confidence 34455566666778889999999998
No 412
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=21.70 E-value=30 Score=29.55 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=11.7
Q ss_pred EEEEcCCCCCcce
Q 013623 308 CILADQSGSGKTL 320 (439)
Q Consensus 308 vli~ApTGSGKTl 320 (439)
+++.++.|||||.
T Consensus 3 I~l~G~~GsGKsT 15 (195)
T 2pbr_A 3 IAFEGIDGSGKTT 15 (195)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 7899999999985
No 413
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=21.69 E-value=33 Score=31.96 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788999999999986
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.55 E-value=33 Score=31.68 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999986
No 415
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=21.40 E-value=75 Score=35.39 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=24.9
Q ss_pred eEEEEECCCChHHHHHHhcCCCcEEEEChHH
Q 013623 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406 (439)
Q Consensus 376 ~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgr 406 (439)
++.++..+.....++..+..++.|||+|-.+
T Consensus 237 ~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 237 RSLLILDDVWDPWVLKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp SCEEEEESCCCHHHHTTTCSSCEEEEEESST
T ss_pred CEEEEEecCCCHHHHHhhcCCCEEEEEcCCH
Confidence 6778888887777877788889999999643
No 416
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.34 E-value=28 Score=32.19 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999985
No 417
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=21.33 E-value=30 Score=32.07 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCCccee
Q 013623 306 KSCILADQSGSGKTLA 321 (439)
Q Consensus 306 rDvli~ApTGSGKTla 321 (439)
.-+++++++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4589999999999863
No 418
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=21.32 E-value=4.3e+02 Score=23.61 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=49.4
Q ss_pred hcCCcEEEEcCCC--CCcceeehhHHHHHHHHHHhhccCCCCCCCCeEEEEcCcHHHHHHHHHHHHhhhcCCCCceEEEE
Q 013623 303 VEGKSCILADQSG--SGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380 (439)
Q Consensus 303 LsGrDvli~ApTG--SGKTlaylLPiL~~l~~~~~~~~~~~~~~gp~aLILvPTrELA~Qi~~~l~~L~k~~~~i~v~~l 380 (439)
++++-++|.+-+| -|+. +...+.. .+.+++++.-..+-..+..+.+.... .-++..+
T Consensus 20 l~~k~vlITGasg~GIG~~------~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~ 78 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGST------TARRALL-----------EGADVVISDYHERRLGETRDQLADLG----LGRVEAV 78 (266)
T ss_dssp TTTCEEEESSCSSSSHHHH------HHHHHHH-----------TTCEEEEEESCHHHHHHHHHHHHTTC----SSCEEEE
T ss_pred CCCCEEEEECCCCCchHHH------HHHHHHH-----------CCCEEEEecCCHHHHHHHHHHHHhcC----CCceEEE
Confidence 5788899998865 4542 3333333 25567777777776666666664432 2355666
Q ss_pred ECCCChHHHHHHhc-------CCCcEEEEChH
Q 013623 381 TGGFRQKTQLENLQ-------EGVDVLIATPG 405 (439)
Q Consensus 381 ~Gg~~~~~q~~~L~-------~g~dILVaTPg 405 (439)
..+......+..+. ..+|+||-+.|
T Consensus 79 ~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 66765554433321 35899987765
No 419
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=21.30 E-value=32 Score=30.76 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCCCcce
Q 013623 305 GKSCILADQSGSGKTL 320 (439)
Q Consensus 305 GrDvli~ApTGSGKTl 320 (439)
+..+++.++.|||||.
T Consensus 5 ~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 5 KHNLILIGAPGSGKGT 20 (217)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4568999999999985
No 420
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=21.14 E-value=48 Score=31.91 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=21.6
Q ss_pred CHHHHHHhhhHh----cCC---cEEEEcCCCCCccee
Q 013623 292 SQIQAMAFPPVV----EGK---SCILADQSGSGKTLA 321 (439)
Q Consensus 292 TpIQ~~aIP~iL----sGr---Dvli~ApTGSGKTla 321 (439)
.|.|..++..+. +|+ -+++.+|.|+|||..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH
Confidence 566777665543 443 389999999999864
No 421
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=21.10 E-value=42 Score=31.40 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCcce
Q 013623 305 GKSCILADQSGSGKTL 320 (439)
Q Consensus 305 GrDvli~ApTGSGKTl 320 (439)
|+.++|.++.|+|||.
T Consensus 31 ~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSS 46 (350)
T ss_dssp CSEEEEECCTTSSHHH
T ss_pred CCeEEEECCCcCCHHH
Confidence 5789999999999995
No 422
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=20.91 E-value=34 Score=32.62 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.=+.+.+|+|+|||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999985
No 423
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=20.87 E-value=32 Score=30.16 Aligned_cols=15 Identities=40% Similarity=0.326 Sum_probs=12.4
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
-+.+.++.|||||..
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999863
No 424
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=20.86 E-value=34 Score=32.10 Aligned_cols=17 Identities=35% Similarity=0.521 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57778999999999985
No 425
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=20.78 E-value=34 Score=33.08 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+.+.+|+|+|||..
T Consensus 101 ~g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSSEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 356788999999999863
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=20.67 E-value=33 Score=29.50 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=12.0
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
+++.++.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999853
No 427
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.62 E-value=35 Score=32.23 Aligned_cols=17 Identities=24% Similarity=0.517 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778999999999985
No 428
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=20.60 E-value=43 Score=32.93 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCCCccee
Q 013623 303 VEGKSCILADQSGSGKTLA 321 (439)
Q Consensus 303 LsGrDvli~ApTGSGKTla 321 (439)
-.|+-+++.+++|+|||..
T Consensus 59 ~~G~iv~I~G~pGsGKTtL 77 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTV 77 (349)
T ss_dssp ETTSEEEEEESTTSSHHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3567899999999999964
No 429
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=20.59 E-value=35 Score=31.67 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.|.-+.+.+|+|+|||..
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999863
No 430
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=20.57 E-value=27 Score=30.31 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|.|+|||.
T Consensus 32 ~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SCEEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56668899999999985
No 431
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=20.56 E-value=35 Score=31.89 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778999999999985
No 432
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=20.55 E-value=2.4e+02 Score=26.93 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=35.3
Q ss_pred EEEcCcH-HHHHHHHHHHHhhhcC----CCCceEEEEECCCChHHHHHHhcCCCcEEEEChHHHHHHHHhCCCCCCCccc
Q 013623 349 VILAPTA-ELASQVLSNCRSLSKC----GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRW 423 (439)
Q Consensus 349 LILvPTr-ELA~Qi~~~l~~L~k~----~~~i~v~~l~Gg~~~~~q~~~L~~g~dILVaTPgrLldlL~~~~l~L~~Lr~ 423 (439)
|+++++. +|+....+.+...... ..+.-+..+.||......... |....+...++++++.+
T Consensus 24 i~i~~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGsTP~~~y~~--------------L~~~~~~~~idw~~v~~ 89 (289)
T 3hn6_A 24 LIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKN--------------LIELNKNKKISFQNVIT 89 (289)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHH--------------HHHHHHTTSCCCTTEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCccHHHHHHH--------------HHHhHhhcCCCchheEE
Confidence 5566654 4555555544443321 011235556666544433222 22223346788999999
Q ss_pred EEEeC
Q 013623 424 YARTA 428 (439)
Q Consensus 424 LVlDE 428 (439)
+-+||
T Consensus 90 f~~DE 94 (289)
T 3hn6_A 90 FNMDE 94 (289)
T ss_dssp EESEE
T ss_pred EeCcc
Confidence 99999
No 433
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.49 E-value=33 Score=30.76 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.6
Q ss_pred cEEEEcCCCCCccee
Q 013623 307 SCILADQSGSGKTLA 321 (439)
Q Consensus 307 Dvli~ApTGSGKTla 321 (439)
=.+|.+++|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 357889999999965
No 434
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=20.49 E-value=32 Score=33.38 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=12.3
Q ss_pred EEEEcCCCCCccee
Q 013623 308 CILADQSGSGKTLA 321 (439)
Q Consensus 308 vli~ApTGSGKTla 321 (439)
.++++|+|+|||..
T Consensus 26 ~~i~G~NGsGKS~l 39 (339)
T 3qkt_A 26 NLIIGQNGSGKSSL 39 (339)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 47899999999975
No 435
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.44 E-value=33 Score=43.81 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=18.2
Q ss_pred HhhhH-hcCCcEEEEcCCCCCcce
Q 013623 298 AFPPV-VEGKSCILADQSGSGKTL 320 (439)
Q Consensus 298 aIP~i-LsGrDvli~ApTGSGKTl 320 (439)
.+..+ ..++.+++++|||+|||.
T Consensus 1296 ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1296 VLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHHHHHHTTCCCEEESSTTSSHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCHHH
Confidence 34443 478999999999999994
No 436
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=20.27 E-value=36 Score=31.97 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCcce
Q 013623 304 EGKSCILADQSGSGKTL 320 (439)
Q Consensus 304 sGrDvli~ApTGSGKTl 320 (439)
.|.-+.+.+|+|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57778899999999986
No 437
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=20.24 E-value=29 Score=38.21 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.++.+++.+|+|+|||..
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 467899999999999953
No 438
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=20.20 E-value=88 Score=28.97 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=19.6
Q ss_pred ChHHHHHHHHhCCCCCCCcccEEEeC
Q 013623 403 TPGRFMFLIKEGILQLINLRWYARTA 428 (439)
Q Consensus 403 TPgrLldlL~~~~l~L~~Lr~LVlDE 428 (439)
||..+.+.|.+..++++++.++-+||
T Consensus 48 tp~~~y~~L~~~~idw~~v~~f~~DE 73 (233)
T 3nwp_A 48 TPLKLFQLLSMKSIDWSDVYITLADE 73 (233)
T ss_dssp TTHHHHHHHHHCCSCGGGEEEEESEE
T ss_pred CHHHHHHHHHhcCCChhHeEEEeCee
Confidence 34555566666778889999999999
No 439
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=20.16 E-value=1.1e+02 Score=28.07 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=24.8
Q ss_pred EEEcCcHH-HHHHHHHHHHhhhcCCCCceEEEEECCCChHHHHHHh
Q 013623 349 VILAPTAE-LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393 (439)
Q Consensus 349 LILvPTrE-LA~Qi~~~l~~L~k~~~~i~v~~l~Gg~~~~~q~~~L 393 (439)
+++.++.+ |+....+.+...... .+--+..+.||.........|
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~-~~~~~l~lsgGstp~~~~~~L 48 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQ-GQPVHISLSGGSTPKMLFKLL 48 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTT-SSCEEEEECCSHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHH
Confidence 55666654 777777777666542 223455666666555444433
No 440
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=20.15 E-value=33 Score=32.93 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCccee
Q 013623 304 EGKSCILADQSGSGKTLA 321 (439)
Q Consensus 304 sGrDvli~ApTGSGKTla 321 (439)
.++-+++.+++|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999864
Done!