BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013624
         (439 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FZ45|Y1686_ARATH Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana
           GN=At1g16860 PE=1 SV=1
          Length = 474

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/481 (71%), Positives = 381/481 (79%), Gaps = 49/481 (10%)

Query: 1   MGSRYPSHQLSNGLFVSGRPEQPKEKAPTMSSVAMPYTGGDIKKSGELGKMFDIPMDSAK 60
           MGSRYPSHQLSNGLFVSGRPEQPKE+APTMS+VAMPYTGGDIK+SGELGKMFDIP D  K
Sbjct: 1   MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query: 61  SRKSGPITGAPSRTGSFAGAATHSGSIPNAAGRAGYNVSGPISSGGPGSSSMKKTNSGPL 120
           SRKSGPI GAPSR+GSFAG A      P A GR    +SG ++S G  S SMKKTNSGPL
Sbjct: 61  SRKSGPIPGAPSRSGSFAGTAQSGPGAPMATGR----MSGSLASAG--SVSMKKTNSGPL 114

Query: 121 NKHGEPIKKSSGPQSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGSLD 180
           +KHGEP+KKSSGPQSGG TRQNSG IP  LPATGLITSGPI+SGPLNSSGAPRK+SG LD
Sbjct: 115 SKHGEPLKKSSGPQSGGVTRQNSGSIP-ILPATGLITSGPITSGPLNSSGAPRKVSGPLD 173

Query: 181 SSGSIKMNSSSIAQNQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFIL---- 236
           SSG +K +  ++  NQAVTT+  EDD+S  K+FPKPVLWLV+LIF+MGF+AGGFIL    
Sbjct: 174 SSGLMKSHMPTVVHNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGFILGAVH 233

Query: 237 --------------------------------------DTDLRTAKSGQFVKVTGVVTCG 258
                                                 D DLRTAK+GQ VKVTGVVTCG
Sbjct: 234 NPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGVVTCG 293

Query: 259 NVPLESSFRRVPRCVYTSTSLYEYRAWGSKPANPKHRHFTWGLRSLERHVVDFYISDFQS 318
           NVPLESSF RVPRCVYTST LYEYR WGSKPAN  HRHFTWGLRS ERHVVDFYISDFQS
Sbjct: 294 NVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISDFQS 353

Query: 319 GLRALVKTGSGARVTPFVDDSVVIDIKPENKDLSPEFIRWLGQKSLSSDDRLMRLKEGYI 378
           GLRALVKTGSGA+VTP VDDSVVID K  ++ +SP+F+RWLG+K+L+SDDR+MRLKEGYI
Sbjct: 354 GLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKEGYI 413

Query: 379 KEGSTVSVMGIVQRNDNVLMIVPPPEPIATGWQWTKCIFPASLEGIILRCEDTSNNDVIP 438
           KEGSTVSV+G+VQRNDNVLMIVP  EP+A GWQW +C FP SLEGI+LRCED+SN D IP
Sbjct: 414 KEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSSNVDAIP 473

Query: 439 V 439
           V
Sbjct: 474 V 474


>sp|P96989|OMPB_RICTY Outer membrane protein B OS=Rickettsia typhi (strain ATCC VR-144 /
           Wilmington) GN=ompB PE=1 SV=1
          Length = 1645

 Score = 42.0 bits (97), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 74  TGSFAGAATHSGSIPNAAGRAGYNVSGPISSGGPGSSSMKKTNSGPLNKHGEPIKKSSGP 133
           TG+F G A ++G   N AG   +N +G + SG     ++  TN   +   G  I + SG 
Sbjct: 418 TGNFIGDAKNNG---NTAGVITFNANGTLVSGNT-DPNIVVTNIKAIEVEGAGIVQLSGI 473

Query: 134 QSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGSLDSSGSIKMNSSSIA 193
                   N+G I     A G + +GP++  PL ++ A    S  LD S  I  +  + A
Sbjct: 474 HGAELRLGNAGSIFKL--ADGTVINGPVNQNPLVNNNALAAGSIQLDGSAIITGDIGNGA 531

Query: 194 QNQAVTTITQEDDYS 208
            N A+  IT  +D S
Sbjct: 532 VNAALQDITLANDAS 546


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,542,309
Number of Sequences: 539616
Number of extensions: 7940275
Number of successful extensions: 22437
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 426
Number of HSP's that attempted gapping in prelim test: 19978
Number of HSP's gapped (non-prelim): 2249
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)