Query 013624
Match_columns 439
No_of_seqs 76 out of 78
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 14:03:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013624.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013624hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wnaa1 d.319.1.1 (A:1-127) Hy 25.8 29 0.0021 28.6 3.9 63 310-385 31-101 (127)
2 d2h2ja2 b.85.7.3 (A:50-310) Ru 19.9 45 0.0033 27.1 4.1 16 353-368 6-21 (261)
3 d2gvha2 d.38.1.1 (A:147-262) P 18.0 1E+02 0.0076 23.1 5.6 18 239-256 54-71 (116)
4 d1u0ma2 c.95.1.2 (A:202-349) P 15.3 24 0.0017 28.3 1.1 18 373-390 116-133 (148)
5 d2pi2a1 b.40.4.3 (A:44-171) Re 15.3 47 0.0034 25.8 2.9 18 239-256 73-90 (128)
6 d1ogya1 b.52.2.2 (A:682-801) P 13.3 34 0.0025 26.2 1.5 36 237-275 45-85 (120)
7 d1ltla_ b.40.4.11 (A:) DNA rep 12.8 72 0.0052 27.0 3.7 22 236-257 197-218 (239)
8 d3brda3 b.42.7.1 (A:381-541) D 12.4 1.1E+02 0.0078 25.9 4.6 44 371-417 62-118 (161)
9 d2d6fa1 b.38.3.1 (A:2-73) Glut 10.8 1.6E+02 0.011 21.8 4.6 28 353-381 4-32 (72)
10 d1zrja1 a.140.2.1 (A:1-37) Het 10.7 67 0.0049 21.0 2.1 16 353-368 9-24 (37)
No 1
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=25.80 E-value=29 Score=28.57 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=40.1
Q ss_pred cEEEEecCC-----ceeEEEEeCCCCeeeeeeecceEEecCCCC---CCCCHHHHHHhhhcCCCCCCceeEEeeeeeeeC
Q 013624 310 DFYISDFQS-----GLRALVKTGSGARVTPFVDDSVVIDIKPEN---KDLSPEFIRWLGQKSLSSDDRLMRLKEGYIKEG 381 (439)
Q Consensus 310 DFYIsD~~S-----G~RALVKaG~GakVtp~V~e~~vv~~~~~~---kdlS~~f~~WL~erNLSsd~r~mRlkEGyIkEG 381 (439)
-.||||.|. +.-++|..|.. +.+..|. .++-. ..+=.||.+||.+|+. =+.+|-.|-.|
T Consensus 31 ~~lITDwQdqR~qArya~lv~~Gk~----~ll~~dA---FGPafp~G~~ALaELv~wl~~~G~------r~~~EaVv~p~ 97 (127)
T d1wnaa1 31 VYLITDWQDKRDQARYALLLHTGKK----DLLVPDA---FGPAFPGGEEALSELVGLLLAQGA------RRFYEAVVSPG 97 (127)
T ss_dssp EEEEEECCSSTTSCCEEEEEECSSC----EEEEEEE---ESTTSTTHHHHHHHHHHHHHHTTC------CEEEEEEECGG
T ss_pred EEEEecccchhhhhhhHHHhhcCCc----ccccccc---cCCCCccHHHHHHHHHHHHHHcCC------chhhhhhcCHH
Confidence 369999875 45567777764 3444443 23222 2344689999999985 26778877777
Q ss_pred CEEE
Q 013624 382 STVS 385 (439)
Q Consensus 382 stvS 385 (439)
|-..
T Consensus 98 e~~~ 101 (127)
T d1wnaa1 98 EMTA 101 (127)
T ss_dssp GHHH
T ss_pred HHHH
Confidence 6543
No 2
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=19.94 E-value=45 Score=27.13 Aligned_cols=16 Identities=19% Similarity=0.621 Sum_probs=13.8
Q ss_pred HHHHHHhhhcCCCCCC
Q 013624 353 PEFIRWLGQKSLSSDD 368 (439)
Q Consensus 353 ~~f~~WL~erNLSsd~ 368 (439)
..|.+|+.++++-.++
T Consensus 6 ~~~~~W~~~~g~~~~~ 21 (261)
T d2h2ja2 6 QTFWKWLQEEGVITAK 21 (261)
T ss_dssp HHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHCCCccCC
Confidence 3699999999998876
No 3
>d2gvha2 d.38.1.1 (A:147-262) Probable acyl-CoA hydrolase AGR_L_2016 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=18.00 E-value=1e+02 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.3
Q ss_pred cccccccCcEEEEEEEEE
Q 013624 239 DLRTAKSGQFVKVTGVVT 256 (439)
Q Consensus 239 ~Lr~a~dGq~VKItG~Vt 256 (439)
=++-++.|+.++++|.|+
T Consensus 54 F~~Pv~~Gd~l~~~a~V~ 71 (116)
T d2gvha2 54 FARAIEIGEIVEAQAHVE 71 (116)
T ss_dssp BSSCCBTTEEEEEEEEEE
T ss_pred EEeeecCCCEEEEEEEEE
Confidence 356778999999999654
No 4
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.31 E-value=24 Score=28.30 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.0
Q ss_pred EeeeeeeeCCEEEEEEEE
Q 013624 373 LKEGYIKEGSTVSVMGIV 390 (439)
Q Consensus 373 lkEGyIkEGstvSVmGvv 390 (439)
++||.|++||+|-.+|..
T Consensus 116 ~~~~~~~~Gd~ill~gfG 133 (148)
T d1u0ma2 116 FDEGGVEEGARGLLAGFG 133 (148)
T ss_dssp HHSCCCCSSCCCEEEEEE
T ss_pred HHcCCCCCCCEEEEEEEc
Confidence 468999999999999854
No 5
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.28 E-value=47 Score=25.80 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=14.9
Q ss_pred cccccccCcEEEEEEEEE
Q 013624 239 DLRTAKSGQFVKVTGVVT 256 (439)
Q Consensus 239 ~Lr~a~dGq~VKItG~Vt 256 (439)
+...+++|.||||.|.+.
T Consensus 73 ~~~~i~~g~yVrV~G~lk 90 (128)
T d2pi2a1 73 ENTVVPPETYVKVAGHLR 90 (128)
T ss_dssp -CCCCCTTCEEEEEEEEE
T ss_pred ccccccCCCEEEEEEEEE
Confidence 446788999999999986
No 6
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.28 E-value=34 Score=26.16 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=24.2
Q ss_pred eecccccccCcEEEEE---EEEEeccccccCCcCCC--CceEEE
Q 013624 237 DTDLRTAKSGQFVKVT---GVVTCGNVPLESSFRRV--PRCVYT 275 (439)
Q Consensus 237 d~~Lr~a~dGq~VKIt---G~VtcG~~PL~ss~~k~--~rCVYt 275 (439)
|+.-..++|||.|+|+ |.|++ -+.+.+..+ +-|||.
T Consensus 45 dA~~~Gi~dGd~V~v~s~~G~i~~---~~~v~~~~~v~~G~v~~ 85 (120)
T d1ogya1 45 DARSRGLNRGSEVRVISRRGEIRT---RLETRGRNRMPRGVVFV 85 (120)
T ss_dssp HHHHTTCCTTCEEEEECSSCEEEE---EEESSSSSBCCTTEEEE
T ss_pred HHHHhCCCCCCEEEEECCCCcEEE---EEEeeccCCCCCCEEEE
Confidence 8888999999999999 65542 233333322 347776
No 7
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.84 E-value=72 Score=26.97 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=17.9
Q ss_pred eeecccccccCcEEEEEEEEEe
Q 013624 236 LDTDLRTAKSGQFVKVTGVVTC 257 (439)
Q Consensus 236 ld~~Lr~a~dGq~VKItG~Vtc 257 (439)
-|--+..++.|+.|+|||.+.+
T Consensus 197 ~~dlvd~~~pGd~V~i~GI~~~ 218 (239)
T d1ltla_ 197 EDDLVDTLTPGDIVRVTGTLRT 218 (239)
T ss_dssp EGGGTTCCCTTCEEEEEEEEEE
T ss_pred eccccCccCCCCEEEEEEEEEE
Confidence 3555668999999999999864
No 8
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=12.43 E-value=1.1e+02 Score=25.94 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=33.3
Q ss_pred eEEeeeeeeeCCEEEEEE----------EEEecCceeeEeCC---CCcccccceeeeecc
Q 013624 371 MRLKEGYIKEGSTVSVMG----------IVQRNDNVLMIVPP---PEPIATGWQWTKCIF 417 (439)
Q Consensus 371 mRlkEGyIkEGstvSVmG----------vvkr~~~~~mi~~p---~e~~stgcq~~~~~l 417 (439)
.-+.||||.=|++|-..= +++|.|....++.- .|||| |+.||-|
T Consensus 62 ~~~~~~~I~Ygs~V~Lv~~~TGv~sppLiIRKVdk~~~~ld~~~~ddpVS---QLhK~Af 118 (161)
T d3brda3 62 FAVRDGFVYYGSVVKLVDSVTGIALPRLRIRKVDKQQVILDASCSEEPVS---QLHKCAF 118 (161)
T ss_dssp EEEECSBCBTTCEEEEEETTTCCBCCCEEEEEEETTEEECCTTGGGSBCB---TTEEEEE
T ss_pred ccCCCCeEEeCCEEEEEEcCCCccCCCEEEEEEcCCeEeccCccCCCcHH---hhheeEE
Confidence 455599999999998764 67777777666544 58988 7888876
No 9
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.81 E-value=1.6e+02 Score=21.84 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=19.6
Q ss_pred HHHHHHhhhcCCCCCCceeEEe-eeeeeeC
Q 013624 353 PEFIRWLGQKSLSSDDRLMRLK-EGYIKEG 381 (439)
Q Consensus 353 ~~f~~WL~erNLSsd~r~mRlk-EGyIkEG 381 (439)
-..++||.++|+.--||+ |++ ++.+-||
T Consensus 4 gk~~~fL~~~~i~vGD~V-~i~~~~~~~eG 32 (72)
T d2d6fa1 4 GRARKFLESASIDVGDMV-LVEKPDVTYEG 32 (72)
T ss_dssp HHHHHHHHTTTCCTTCEE-EEECSSCEEEE
T ss_pred hHHHHHHHHcCCCCCCEE-EEEECCcEEEE
Confidence 356899999999999975 554 4444443
No 10
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.75 E-value=67 Score=21.01 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=14.8
Q ss_pred HHHHHHhhhcCCCCCC
Q 013624 353 PEFIRWLGQKSLSSDD 368 (439)
Q Consensus 353 ~~f~~WL~erNLSsd~ 368 (439)
.+|+..|++|||+..+
T Consensus 9 ~eLK~~Lk~rgL~~sG 24 (37)
T d1zrja1 9 NELREELQRRGLDTRG 24 (37)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHCCCCCCC
Confidence 5899999999999987
Done!