Query 013625
Match_columns 439
No_of_seqs 141 out of 1645
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08013 oxidoreductase; Provi 100.0 1.5E-49 3.2E-54 392.5 41.7 372 4-433 24-397 (400)
2 PRK08850 2-octaprenyl-6-methox 100.0 6.7E-49 1.5E-53 388.8 40.8 372 4-434 25-399 (405)
3 PRK06617 2-octaprenyl-6-methox 100.0 1.7E-48 3.7E-53 381.6 39.0 350 4-428 22-373 (374)
4 PRK05714 2-octaprenyl-3-methyl 100.0 7.3E-48 1.6E-52 381.7 39.5 374 4-434 23-402 (405)
5 TIGR01989 COQ6 Ubiquinone bios 100.0 1.3E-47 2.8E-52 382.4 40.6 402 5-422 26-437 (437)
6 PRK08773 2-octaprenyl-3-methyl 100.0 5.5E-47 1.2E-51 373.8 40.4 365 4-428 27-392 (392)
7 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.6E-46 5.6E-51 367.5 39.5 361 4-429 23-386 (387)
8 PRK07364 2-octaprenyl-6-methox 100.0 3.6E-46 7.8E-51 371.1 40.4 370 4-436 39-413 (415)
9 PRK08849 2-octaprenyl-3-methyl 100.0 4.9E-46 1.1E-50 365.6 40.5 360 4-428 24-384 (384)
10 PRK07333 2-octaprenyl-6-methox 100.0 1.9E-45 4.2E-50 364.5 41.2 366 6-435 26-398 (403)
11 PRK08020 ubiF 2-octaprenyl-3-m 100.0 1.3E-44 2.8E-49 357.1 42.0 365 4-428 26-391 (391)
12 PRK09126 hypothetical protein; 100.0 5.1E-45 1.1E-49 360.1 37.6 367 4-429 24-391 (392)
13 TIGR01988 Ubi-OHases Ubiquinon 100.0 1.8E-44 3.9E-49 355.5 41.0 364 4-427 20-385 (385)
14 PRK07494 2-octaprenyl-6-methox 100.0 1.7E-44 3.7E-49 355.8 38.0 355 4-428 28-387 (388)
15 PRK06996 hypothetical protein; 100.0 7.5E-44 1.6E-48 351.6 40.0 348 6-426 38-393 (398)
16 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.2E-43 2.5E-48 349.3 40.4 360 4-427 20-382 (382)
17 PRK05732 2-octaprenyl-6-methox 100.0 1.7E-42 3.7E-47 342.5 41.0 364 5-428 28-392 (395)
18 PRK07608 ubiquinone biosynthes 100.0 4.6E-42 9.9E-47 338.7 40.8 362 4-427 26-388 (388)
19 PRK06185 hypothetical protein; 100.0 2.4E-42 5.3E-47 342.6 32.6 358 4-426 27-392 (407)
20 PRK06183 mhpA 3-(3-hydroxyphen 100.0 8.8E-42 1.9E-46 348.9 36.5 355 4-429 31-394 (538)
21 PRK07588 hypothetical protein; 100.0 2.5E-41 5.4E-46 333.5 32.1 361 4-432 21-388 (391)
22 PRK08244 hypothetical protein; 100.0 2.9E-40 6.3E-45 334.9 38.1 351 4-429 23-378 (493)
23 PRK06834 hypothetical protein; 100.0 7.3E-40 1.6E-44 329.0 37.0 346 4-429 24-371 (488)
24 PRK06753 hypothetical protein; 100.0 9.5E-40 2E-44 320.4 30.1 333 4-412 21-357 (373)
25 PRK08243 4-hydroxybenzoate 3-m 100.0 6.2E-39 1.3E-43 316.1 35.4 357 4-428 23-388 (392)
26 PRK07045 putative monooxygenas 100.0 4.8E-39 1E-43 316.9 32.5 345 4-409 26-374 (388)
27 PRK06475 salicylate hydroxylas 100.0 3.9E-39 8.4E-44 318.4 29.5 335 4-411 23-377 (400)
28 PRK08132 FAD-dependent oxidore 100.0 8.2E-38 1.8E-42 320.5 37.5 347 4-422 44-400 (547)
29 PRK06184 hypothetical protein; 100.0 7.5E-38 1.6E-42 317.8 33.7 317 4-394 24-353 (502)
30 PRK05868 hypothetical protein; 100.0 3.7E-38 7.9E-43 307.7 30.3 337 4-408 22-367 (372)
31 PRK08294 phenol 2-monooxygenas 100.0 2.1E-37 4.6E-42 319.4 36.7 328 5-397 55-416 (634)
32 PRK06847 hypothetical protein; 100.0 2.9E-37 6.3E-42 303.1 32.5 342 4-412 25-373 (375)
33 PRK07190 hypothetical protein; 100.0 1.4E-36 3E-41 305.0 37.0 342 4-429 26-374 (487)
34 PRK08163 salicylate hydroxylas 100.0 2.3E-37 4.9E-42 306.0 30.4 338 4-411 25-373 (396)
35 PLN02985 squalene monooxygenas 100.0 2E-37 4.4E-42 312.0 30.2 373 4-435 64-444 (514)
36 PRK07538 hypothetical protein; 100.0 3.7E-37 8.1E-42 305.6 29.4 321 4-388 21-361 (413)
37 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.3E-36 5E-41 297.0 33.9 356 4-427 23-387 (390)
38 TIGR03219 salicylate_mono sali 100.0 7.6E-37 1.6E-41 303.6 26.6 329 5-401 22-381 (414)
39 PTZ00367 squalene epoxidase; P 100.0 3.4E-36 7.3E-41 304.4 31.6 369 4-435 54-458 (567)
40 KOG3855 Monooxygenase involved 100.0 8.4E-37 1.8E-41 281.5 24.5 412 1-428 58-480 (481)
41 PRK06126 hypothetical protein; 100.0 6.7E-36 1.4E-40 306.7 33.5 319 4-394 28-376 (545)
42 PRK07236 hypothetical protein; 100.0 4.8E-36 1E-40 295.1 28.0 317 4-395 27-377 (386)
43 PF01494 FAD_binding_3: FAD bi 100.0 1.2E-36 2.6E-41 296.2 23.3 314 4-386 22-356 (356)
44 PLN02927 antheraxanthin epoxid 100.0 1.7E-33 3.7E-38 285.9 31.1 345 4-408 102-468 (668)
45 KOG2614 Kynurenine 3-monooxyge 100.0 8.3E-32 1.8E-36 250.8 20.2 329 3-399 22-381 (420)
46 PLN00093 geranylgeranyl diphos 100.0 6.2E-28 1.3E-32 239.7 33.4 312 4-398 60-389 (450)
47 TIGR02023 BchP-ChlP geranylger 100.0 2.9E-27 6.2E-32 232.8 34.2 323 4-423 21-360 (388)
48 TIGR02028 ChlP geranylgeranyl 100.0 2.7E-26 5.9E-31 225.9 34.7 332 4-423 21-370 (398)
49 PRK08255 salicylyl-CoA 5-hydro 100.0 8.9E-27 1.9E-31 246.0 24.1 303 6-396 25-342 (765)
50 PRK11445 putative oxidoreducta 99.9 2E-25 4.4E-30 216.5 27.4 282 7-379 24-317 (351)
51 TIGR02032 GG-red-SF geranylger 99.9 4.8E-25 1E-29 209.1 26.1 266 4-352 21-295 (295)
52 COG0644 FixC Dehydrogenases (f 99.9 2.4E-22 5.3E-27 198.0 31.1 311 4-394 24-340 (396)
53 KOG1298 Squalene monooxygenase 99.9 3.6E-23 7.9E-28 189.7 23.2 371 4-434 66-443 (509)
54 PRK10015 oxidoreductase; Provi 99.9 3E-22 6.5E-27 198.7 28.0 326 4-396 26-374 (429)
55 PRK10157 putative oxidoreducta 99.9 1.2E-20 2.5E-25 187.6 30.9 319 4-394 26-371 (428)
56 TIGR01790 carotene-cycl lycope 99.9 6.5E-19 1.4E-23 173.7 28.7 229 90-385 80-325 (388)
57 PF04820 Trp_halogenase: Trypt 99.8 1.8E-19 4E-24 179.4 24.1 315 7-404 26-397 (454)
58 PF08491 SE: Squalene epoxidas 99.8 3E-20 6.6E-25 167.5 16.3 241 161-434 2-246 (276)
59 PLN02697 lycopene epsilon cycl 99.8 6.5E-16 1.4E-20 155.4 30.4 290 4-386 129-447 (529)
60 PLN02463 lycopene beta cyclase 99.8 1.3E-15 2.9E-20 150.9 29.3 264 4-360 49-336 (447)
61 TIGR01789 lycopene_cycl lycope 99.7 1.5E-14 3.3E-19 140.9 22.6 223 90-390 84-318 (370)
62 PF05834 Lycopene_cycl: Lycope 99.5 1E-11 2.2E-16 121.5 27.4 259 3-354 21-290 (374)
63 PRK04176 ribulose-1,5-biphosph 98.2 1.6E-05 3.4E-10 73.5 10.9 125 4-178 46-179 (257)
64 TIGR00292 thiazole biosynthesi 98.1 7.1E-05 1.5E-09 69.0 13.2 71 90-178 95-176 (254)
65 KOG2415 Electron transfer flav 98.1 0.00075 1.6E-08 64.3 19.4 318 5-377 104-444 (621)
66 TIGR02352 thiamin_ThiO glycine 97.7 0.0023 5E-08 61.6 17.4 63 90-174 132-195 (337)
67 TIGR01377 soxA_mon sarcosine o 97.5 0.0068 1.5E-07 59.5 18.0 71 90-182 140-211 (380)
68 TIGR01373 soxB sarcosine oxida 97.3 0.0094 2E-07 59.2 16.5 112 92-226 180-292 (407)
69 PF01266 DAO: FAD dependent ox 97.3 0.0021 4.6E-08 62.2 10.9 71 88-180 140-212 (358)
70 COG2081 Predicted flavoprotein 97.3 0.00082 1.8E-08 64.2 7.5 59 93-172 109-167 (408)
71 PRK12409 D-amino acid dehydrog 97.1 0.03 6.5E-07 55.6 17.7 67 93-180 195-267 (410)
72 PRK11728 hydroxyglutarate oxid 97.1 0.0078 1.7E-07 59.5 13.2 70 90-181 144-214 (393)
73 PRK12416 protoporphyrinogen ox 97.1 0.02 4.4E-07 57.9 16.3 51 96-169 227-277 (463)
74 TIGR00275 flavoprotein, HI0933 97.1 0.0039 8.4E-08 61.8 10.4 68 94-183 104-182 (400)
75 PRK01747 mnmC bifunctional tRN 97.0 0.023 4.9E-07 60.2 15.9 61 91-173 404-464 (662)
76 PRK00711 D-amino acid dehydrog 96.7 0.12 2.6E-06 51.4 17.5 60 92-173 198-258 (416)
77 PRK05192 tRNA uridine 5-carbox 96.6 0.019 4.1E-07 59.1 11.4 63 91-173 96-158 (618)
78 TIGR03862 flavo_PP4765 unchara 96.6 0.013 2.8E-07 57.0 9.7 70 93-185 84-165 (376)
79 PRK13369 glycerol-3-phosphate 96.6 0.064 1.4E-06 54.9 15.3 64 92-176 152-220 (502)
80 TIGR00562 proto_IX_ox protopor 96.6 0.13 2.9E-06 51.9 17.4 41 111-171 238-278 (462)
81 TIGR02730 carot_isom carotene 96.6 0.18 3.9E-06 51.5 18.4 66 94-179 228-293 (493)
82 PLN02612 phytoene desaturase 96.5 0.36 7.8E-06 50.1 20.2 63 96-178 309-371 (567)
83 PRK11259 solA N-methyltryptoph 96.5 0.15 3.3E-06 49.9 16.7 60 92-173 146-205 (376)
84 PF03486 HI0933_like: HI0933-l 96.5 0.0096 2.1E-07 58.8 7.8 60 94-173 108-167 (409)
85 PRK12266 glpD glycerol-3-phosp 96.4 0.09 1.9E-06 53.8 15.0 61 92-173 152-217 (508)
86 PRK11883 protoporphyrinogen ox 96.4 0.42 9E-06 48.0 19.6 40 112-171 235-274 (451)
87 PRK07233 hypothetical protein; 96.2 0.47 1E-05 47.3 18.7 56 96-172 199-254 (434)
88 PLN02676 polyamine oxidase 96.2 0.22 4.9E-06 50.6 16.3 43 111-173 245-287 (487)
89 PF13738 Pyr_redox_3: Pyridine 96.1 0.019 4.2E-07 50.7 7.4 62 91-173 78-139 (203)
90 PF01946 Thi4: Thi4 family; PD 96.1 0.048 1E-06 48.1 9.4 124 4-177 38-170 (230)
91 PRK05257 malate:quinone oxidor 96.0 0.03 6.5E-07 56.9 8.9 74 89-181 177-256 (494)
92 COG3380 Predicted NAD/FAD-depe 96.0 0.22 4.7E-06 45.4 13.0 47 95-167 108-155 (331)
93 PF01134 GIDA: Glucose inhibit 95.8 0.076 1.6E-06 51.7 10.3 62 90-171 90-151 (392)
94 PF01593 Amino_oxidase: Flavin 95.8 0.068 1.5E-06 52.9 10.5 61 94-175 208-268 (450)
95 TIGR03467 HpnE squalene-associ 95.7 0.66 1.4E-05 46.0 17.1 53 98-171 200-253 (419)
96 PLN02568 polyamine oxidase 95.5 1 2.2E-05 46.4 17.9 51 96-169 243-293 (539)
97 PF12831 FAD_oxidored: FAD dep 95.4 0.0056 1.2E-07 61.2 1.0 70 90-180 85-157 (428)
98 PLN02976 amine oxidase 95.3 1 2.2E-05 50.9 17.5 70 316-388 1149-1219(1713)
99 TIGR03197 MnmC_Cterm tRNA U-34 95.3 0.053 1.1E-06 53.3 7.3 61 91-173 131-191 (381)
100 COG1635 THI4 Ribulose 1,5-bisp 95.2 0.16 3.4E-06 44.9 9.1 125 4-178 51-184 (262)
101 COG0579 Predicted dehydrogenas 95.1 0.075 1.6E-06 52.4 7.7 72 90-182 148-222 (429)
102 PLN02268 probable polyamine ox 95.1 1.5 3.2E-05 44.0 17.3 39 111-169 211-249 (435)
103 PRK04965 NADH:flavorubredoxin 94.8 0.14 3E-06 50.3 8.9 65 96-181 184-250 (377)
104 TIGR01320 mal_quin_oxido malat 94.8 0.1 2.3E-06 52.9 8.2 72 90-181 173-250 (483)
105 PRK13339 malate:quinone oxidor 94.8 0.15 3.2E-06 51.8 9.2 72 90-181 179-257 (497)
106 PLN02464 glycerol-3-phosphate 94.8 0.68 1.5E-05 48.7 14.3 73 91-181 228-306 (627)
107 TIGR02485 CobZ_N-term precorri 94.5 0.46 9.9E-06 47.6 11.9 65 95-177 123-188 (432)
108 TIGR00136 gidA glucose-inhibit 94.5 0.28 6.1E-06 50.6 10.2 65 90-173 91-155 (617)
109 PTZ00383 malate:quinone oxidor 94.1 0.39 8.4E-06 48.8 10.4 71 91-181 207-283 (497)
110 KOG2820 FAD-dependent oxidored 94.1 0.42 9.1E-06 45.0 9.4 72 90-179 148-221 (399)
111 PLN02576 protoporphyrinogen ox 93.8 4 8.7E-05 41.6 17.4 34 318-357 455-488 (496)
112 COG2509 Uncharacterized FAD-de 93.6 1.7 3.6E-05 42.8 12.9 59 95-173 173-231 (486)
113 PLN02661 Putative thiazole syn 93.6 1.1 2.4E-05 43.2 11.6 63 95-174 172-246 (357)
114 COG0578 GlpA Glycerol-3-phosph 93.5 1.5 3.2E-05 44.6 12.9 147 3-179 32-233 (532)
115 PRK05335 tRNA (uracil-5-)-meth 93.3 0.27 5.9E-06 48.5 7.2 101 4-122 23-125 (436)
116 PRK05249 soluble pyridine nucl 93.2 0.32 6.8E-06 49.2 8.1 60 95-175 216-275 (461)
117 PRK15317 alkyl hydroperoxide r 93.0 0.34 7.3E-06 49.8 7.9 60 92-172 263-322 (517)
118 PF00070 Pyr_redox: Pyridine n 92.9 0.24 5.3E-06 36.5 5.0 41 95-156 40-80 (80)
119 TIGR03329 Phn_aa_oxid putative 92.4 0.48 1E-05 47.9 8.0 61 90-173 178-238 (460)
120 PRK06116 glutathione reductase 92.3 0.51 1.1E-05 47.5 8.0 59 96-175 209-268 (450)
121 COG0665 DadA Glycine/D-amino a 92.1 13 0.00027 36.3 18.1 64 91-175 152-215 (387)
122 TIGR03378 glycerol3P_GlpB glyc 91.8 0.66 1.4E-05 45.8 7.8 61 92-173 260-324 (419)
123 PRK09231 fumarate reductase fl 91.2 0.61 1.3E-05 48.6 7.3 61 95-175 133-199 (582)
124 PRK09754 phenylpropionate diox 91.1 0.83 1.8E-05 45.2 7.9 57 96-174 187-243 (396)
125 TIGR01292 TRX_reduct thioredox 90.9 0.83 1.8E-05 42.9 7.4 59 92-172 54-112 (300)
126 TIGR03140 AhpF alkyl hydropero 90.7 0.92 2E-05 46.6 8.0 60 92-172 264-323 (515)
127 PLN03000 amine oxidase 90.7 12 0.00025 40.8 16.2 38 317-357 587-624 (881)
128 PLN02328 lysine-specific histo 90.4 11 0.00023 40.8 15.7 40 317-359 643-682 (808)
129 PRK07845 flavoprotein disulfid 90.1 1.2 2.6E-05 45.1 8.2 60 95-175 218-277 (466)
130 PLN02507 glutathione reductase 90.1 1.1 2.4E-05 45.7 8.0 59 95-174 244-302 (499)
131 TIGR02734 crtI_fam phytoene de 90.1 0.95 2.1E-05 46.3 7.5 64 95-178 219-282 (502)
132 TIGR01350 lipoamide_DH dihydro 89.5 1.2 2.7E-05 44.9 7.7 60 95-175 211-272 (461)
133 TIGR00551 nadB L-aspartate oxi 89.3 0.86 1.9E-05 46.5 6.5 62 95-176 128-193 (488)
134 PRK06416 dihydrolipoamide dehy 89.1 1.2 2.7E-05 45.0 7.4 59 95-174 213-274 (462)
135 PRK09897 hypothetical protein; 89.1 1.3 2.9E-05 45.4 7.6 50 101-170 113-164 (534)
136 PRK07804 L-aspartate oxidase; 89.0 1 2.3E-05 46.5 6.8 62 95-175 144-213 (541)
137 TIGR01424 gluta_reduc_2 glutat 88.7 1.6 3.5E-05 43.9 7.9 59 95-174 207-265 (446)
138 COG1233 Phytoene dehydrogenase 88.6 1.1 2.3E-05 45.7 6.6 56 95-170 224-279 (487)
139 COG1251 NirB NAD(P)H-nitrite r 88.5 0.47 1E-05 49.2 3.8 63 100-183 192-256 (793)
140 PRK11101 glpA sn-glycerol-3-ph 88.4 2.2 4.7E-05 44.2 8.8 69 91-180 145-220 (546)
141 TIGR02732 zeta_caro_desat caro 88.0 33 0.00071 34.8 17.4 64 97-178 221-289 (474)
142 TIGR03364 HpnW_proposed FAD de 88.0 1.9 4.1E-05 41.9 7.7 58 91-173 141-198 (365)
143 PLN02172 flavin-containing mon 87.8 1.8 3.9E-05 43.7 7.5 61 92-173 108-174 (461)
144 PLN02529 lysine-specific histo 87.6 41 0.00089 36.1 17.6 38 317-357 562-599 (738)
145 TIGR03377 glycerol3P_GlpA glyc 87.5 15 0.00033 37.7 14.3 69 91-180 124-199 (516)
146 TIGR01176 fum_red_Fp fumarate 87.5 1.9 4.2E-05 44.9 7.7 60 95-174 132-197 (580)
147 TIGR02374 nitri_red_nirB nitri 87.4 1.8 3.9E-05 46.9 7.7 56 97-173 184-239 (785)
148 PF06039 Mqo: Malate:quinone o 87.3 1.6 3.4E-05 43.3 6.4 73 89-180 175-253 (488)
149 PTZ00363 rab-GDP dissociation 87.2 2.1 4.5E-05 43.0 7.4 58 95-171 232-289 (443)
150 COG1232 HemY Protoporphyrinoge 87.0 28 0.0006 34.9 15.0 48 96-167 216-263 (444)
151 KOG1346 Programmed cell death 86.6 0.89 1.9E-05 44.0 4.2 64 95-179 393-458 (659)
152 TIGR01812 sdhA_frdA_Gneg succi 86.3 2.1 4.5E-05 44.6 7.3 61 95-176 129-195 (566)
153 PRK07818 dihydrolipoamide dehy 86.1 2.4 5.2E-05 42.9 7.4 59 95-174 213-275 (466)
154 TIGR01813 flavo_cyto_c flavocy 86.0 2.8 6.1E-05 42.0 7.8 62 95-173 130-193 (439)
155 TIGR01423 trypano_reduc trypan 85.8 3.1 6.7E-05 42.4 8.0 61 95-175 231-291 (486)
156 PTZ00052 thioredoxin reductase 85.6 3.1 6.8E-05 42.5 8.0 58 97-175 224-281 (499)
157 TIGR03385 CoA_CoA_reduc CoA-di 85.1 2.8 6E-05 41.9 7.3 55 96-173 180-234 (427)
158 PF13454 NAD_binding_9: FAD-NA 85.1 4 8.6E-05 34.4 7.2 36 115-170 120-155 (156)
159 PTZ00318 NADH dehydrogenase-li 85.0 3 6.5E-05 41.7 7.4 52 96-172 229-280 (424)
160 PRK06327 dihydrolipoamide dehy 84.4 3 6.5E-05 42.3 7.2 59 96-175 225-287 (475)
161 PLN02487 zeta-carotene desatur 84.4 56 0.0012 34.1 19.4 66 97-178 297-365 (569)
162 PRK06912 acoL dihydrolipoamide 84.3 4.1 8.8E-05 41.2 8.1 59 95-174 211-270 (458)
163 PRK08010 pyridine nucleotide-d 83.8 4.4 9.5E-05 40.7 8.1 58 95-174 199-256 (441)
164 PRK14989 nitrite reductase sub 83.6 3.8 8.1E-05 44.8 7.8 58 98-174 190-247 (847)
165 TIGR01421 gluta_reduc_1 glutat 83.2 4.5 9.7E-05 40.8 7.8 59 96-174 208-267 (450)
166 PRK07846 mycothione reductase; 83.2 4.6 0.0001 40.7 7.9 56 97-174 209-264 (451)
167 PRK13512 coenzyme A disulfide 83.0 3.9 8.4E-05 41.0 7.3 54 96-174 190-243 (438)
168 TIGR03169 Nterm_to_SelD pyridi 82.5 3.9 8.5E-05 39.7 7.0 52 96-172 192-243 (364)
169 PRK06115 dihydrolipoamide dehy 82.2 4.4 9.5E-05 41.0 7.4 59 95-174 215-278 (466)
170 TIGR00137 gid_trmFO tRNA:m(5)U 82.2 7.8 0.00017 38.6 8.8 102 4-122 21-123 (433)
171 PRK09564 coenzyme A disulfide 82.0 5.1 0.00011 40.2 7.7 57 95-173 191-247 (444)
172 PRK14694 putative mercuric red 81.9 5.5 0.00012 40.3 8.0 58 95-174 218-275 (468)
173 COG1249 Lpd Pyruvate/2-oxoglut 81.9 5.8 0.00013 39.8 7.9 60 95-175 214-275 (454)
174 KOG1399 Flavin-containing mono 81.8 5.7 0.00012 39.8 7.8 62 90-171 85-152 (448)
175 PRK06370 mercuric reductase; V 81.2 6.1 0.00013 39.9 8.0 58 96-174 213-273 (463)
176 KOG2853 Possible oxidoreductas 81.2 22 0.00047 34.0 10.6 87 92-181 240-330 (509)
177 PRK05329 anaerobic glycerol-3- 80.6 6.1 0.00013 39.3 7.5 56 95-171 259-317 (422)
178 TIGR03452 mycothione_red mycot 80.4 7 0.00015 39.4 8.0 56 97-174 212-267 (452)
179 TIGR01438 TGR thioredoxin and 80.3 7 0.00015 39.8 8.0 59 95-174 220-281 (484)
180 COG2072 TrkA Predicted flavopr 80.0 6.2 0.00014 39.6 7.5 59 97-173 84-145 (443)
181 PRK07251 pyridine nucleotide-d 79.6 7.7 0.00017 38.9 8.1 58 95-174 198-255 (438)
182 TIGR02053 MerA mercuric reduct 79.6 6.5 0.00014 39.7 7.6 58 96-174 208-268 (463)
183 PRK14727 putative mercuric red 79.3 7 0.00015 39.7 7.7 58 96-175 229-286 (479)
184 COG1231 Monoamine oxidase [Ami 79.3 5.6 0.00012 39.3 6.5 37 111-167 221-257 (450)
185 TIGR02733 desat_CrtD C-3',4' d 79.2 5.5 0.00012 40.6 7.0 56 95-171 232-293 (492)
186 TIGR02731 phytoene_desat phyto 79.0 6.8 0.00015 39.4 7.5 63 96-178 214-281 (453)
187 PRK06481 fumarate reductase fl 78.8 8.5 0.00018 39.4 8.2 59 95-174 190-253 (506)
188 PRK06854 adenylylsulfate reduc 78.4 7 0.00015 41.0 7.6 62 93-173 130-196 (608)
189 PRK05945 sdhA succinate dehydr 78.3 7.6 0.00016 40.5 7.7 60 95-174 135-199 (575)
190 PRK06175 L-aspartate oxidase; 77.7 8.7 0.00019 38.5 7.7 60 95-173 128-190 (433)
191 PRK06069 sdhA succinate dehydr 77.7 6.6 0.00014 41.0 7.1 63 95-176 137-204 (577)
192 PRK08274 tricarballylate dehyd 77.5 7 0.00015 39.5 7.1 59 95-173 131-193 (466)
193 PF00743 FMO-like: Flavin-bind 76.6 9.8 0.00021 39.2 7.9 68 91-173 80-151 (531)
194 PRK06134 putative FAD-binding 75.0 12 0.00025 39.2 8.0 58 96-173 218-279 (581)
195 PRK07121 hypothetical protein; 74.2 12 0.00027 38.1 7.9 60 95-173 177-240 (492)
196 PRK08401 L-aspartate oxidase; 74.0 10 0.00023 38.3 7.3 59 95-176 120-179 (466)
197 PRK13748 putative mercuric red 73.7 13 0.00027 38.7 8.0 57 96-174 311-367 (561)
198 KOG2665 Predicted FAD-dependen 73.6 20 0.00043 33.9 8.1 76 91-182 192-268 (453)
199 KOG1336 Monodehydroascorbate/f 73.0 10 0.00022 37.7 6.4 61 95-174 255-315 (478)
200 PRK05976 dihydrolipoamide dehy 72.5 15 0.00032 37.3 7.9 60 96-174 222-283 (472)
201 PF00890 FAD_binding_2: FAD bi 71.8 11 0.00024 37.4 6.8 61 93-173 139-204 (417)
202 PF13434 K_oxygenase: L-lysine 71.2 9.4 0.0002 36.9 5.9 46 105-170 288-339 (341)
203 PRK06467 dihydrolipoamide dehy 70.2 16 0.00034 37.1 7.5 58 96-175 216-277 (471)
204 PTZ00058 glutathione reductase 70.1 17 0.00037 37.8 7.8 59 96-174 279-338 (561)
205 PLN02546 glutathione reductase 69.6 17 0.00037 37.7 7.7 59 97-175 295-353 (558)
206 PRK13977 myosin-cross-reactive 69.4 14 0.00031 38.1 6.9 60 95-170 226-291 (576)
207 PRK09077 L-aspartate oxidase; 68.2 15 0.00032 38.0 7.0 69 95-176 138-211 (536)
208 COG1252 Ndh NADH dehydrogenase 67.5 15 0.00032 36.3 6.3 59 95-178 209-269 (405)
209 PRK09754 phenylpropionate diox 67.2 13 0.00027 36.8 6.0 42 110-173 72-113 (396)
210 PRK10262 thioredoxin reductase 66.7 96 0.0021 29.3 11.9 58 92-172 60-117 (321)
211 PRK08275 putative oxidoreducta 66.6 19 0.00041 37.4 7.4 61 95-174 137-202 (554)
212 PRK06292 dihydrolipoamide dehy 65.3 26 0.00056 35.3 8.0 58 96-175 211-271 (460)
213 KOG4254 Phytoene desaturase [C 63.7 14 0.00029 36.7 5.1 64 95-178 264-327 (561)
214 TIGR01292 TRX_reduct thioredox 63.5 25 0.00055 32.6 7.1 56 98-173 179-239 (300)
215 PRK06263 sdhA succinate dehydr 63.2 22 0.00048 36.8 7.1 59 95-173 134-198 (543)
216 PRK10262 thioredoxin reductase 63.2 25 0.00054 33.4 7.0 56 97-173 187-249 (321)
217 TIGR03169 Nterm_to_SelD pyridi 61.8 13 0.00029 36.0 5.0 54 97-174 56-109 (364)
218 PRK12842 putative succinate de 61.7 32 0.0007 35.9 8.0 57 95-172 214-275 (574)
219 PRK07512 L-aspartate oxidase; 61.0 22 0.00047 36.6 6.5 60 95-173 136-198 (513)
220 PRK08205 sdhA succinate dehydr 60.5 34 0.00073 35.8 7.9 64 95-174 140-208 (583)
221 PRK07208 hypothetical protein; 60.4 26 0.00057 35.4 7.0 59 95-174 218-282 (479)
222 KOG1336 Monodehydroascorbate/f 60.3 16 0.00035 36.3 5.1 43 105-170 137-179 (478)
223 TIGR02374 nitri_red_nirB nitri 59.9 17 0.00037 39.5 5.8 47 104-173 63-109 (785)
224 KOG1335 Dihydrolipoamide dehyd 59.3 38 0.00083 33.0 7.1 63 96-179 253-320 (506)
225 COG0446 HcaD Uncharacterized N 58.9 34 0.00074 33.4 7.4 57 95-172 178-237 (415)
226 COG0492 TrxB Thioredoxin reduc 58.1 39 0.00084 32.1 7.2 59 92-173 58-116 (305)
227 PRK12837 3-ketosteroid-delta-1 57.6 38 0.00082 34.8 7.6 65 96-178 174-244 (513)
228 PRK07573 sdhA succinate dehydr 57.0 34 0.00074 36.2 7.3 57 98-174 173-234 (640)
229 TIGR03140 AhpF alkyl hydropero 56.2 33 0.00072 35.2 7.0 54 99-172 391-450 (515)
230 PTZ00139 Succinate dehydrogena 55.6 37 0.00081 35.7 7.3 60 95-173 166-230 (617)
231 PRK12843 putative FAD-binding 55.0 44 0.00096 34.9 7.7 59 96-174 222-284 (578)
232 PRK14989 nitrite reductase sub 54.4 19 0.00042 39.4 5.0 47 105-174 69-115 (847)
233 PLN00128 Succinate dehydrogena 53.9 44 0.00096 35.3 7.5 61 95-174 187-252 (635)
234 PF13434 K_oxygenase: L-lysine 53.9 20 0.00043 34.6 4.6 71 91-178 91-165 (341)
235 COG0029 NadB Aspartate oxidase 53.7 27 0.00059 35.1 5.5 62 95-176 133-200 (518)
236 PRK09564 coenzyme A disulfide 53.6 26 0.00057 35.0 5.7 50 103-173 64-116 (444)
237 KOG2852 Possible oxidoreductas 53.4 39 0.00084 31.6 5.9 64 90-173 142-209 (380)
238 KOG0685 Flavin-containing amin 52.8 27 0.00058 34.9 5.2 57 92-167 217-281 (498)
239 PRK07843 3-ketosteroid-delta-1 51.8 56 0.0012 33.9 7.8 28 96-124 209-236 (557)
240 PRK07057 sdhA succinate dehydr 49.9 52 0.0011 34.5 7.2 61 95-174 148-213 (591)
241 PRK12839 hypothetical protein; 49.9 67 0.0015 33.5 8.0 63 94-173 213-277 (572)
242 TIGR03143 AhpF_homolog putativ 48.5 63 0.0014 33.6 7.6 60 92-174 57-116 (555)
243 PRK15317 alkyl hydroperoxide r 48.5 49 0.0011 34.0 6.8 55 98-172 389-449 (517)
244 PRK06452 sdhA succinate dehydr 48.1 58 0.0013 33.9 7.3 60 95-174 136-200 (566)
245 COG3634 AhpF Alkyl hydroperoxi 48.0 32 0.0007 33.0 4.7 61 93-171 264-324 (520)
246 PRK09078 sdhA succinate dehydr 47.9 55 0.0012 34.4 7.1 60 95-173 149-213 (598)
247 PRK12835 3-ketosteroid-delta-1 47.9 72 0.0016 33.4 7.9 58 97-173 215-276 (584)
248 PF07992 Pyr_redox_2: Pyridine 47.6 18 0.00039 31.4 3.0 52 101-173 64-123 (201)
249 TIGR01816 sdhA_forward succina 47.6 73 0.0016 33.2 7.9 60 95-174 119-183 (565)
250 PF10819 DUF2564: Protein of u 46.1 22 0.00047 25.8 2.5 34 322-355 18-52 (79)
251 PF00732 GMC_oxred_N: GMC oxid 45.9 62 0.0013 30.2 6.6 62 96-173 194-260 (296)
252 PRK07845 flavoprotein disulfid 45.8 75 0.0016 32.1 7.5 52 100-173 97-152 (466)
253 PRK08071 L-aspartate oxidase; 45.6 52 0.0011 33.8 6.4 58 95-173 130-191 (510)
254 TIGR01424 gluta_reduc_2 glutat 45.2 62 0.0013 32.5 6.8 51 97-172 92-142 (446)
255 TIGR01811 sdhA_Bsu succinate d 44.8 77 0.0017 33.3 7.6 61 96-174 130-198 (603)
256 KOG1346 Programmed cell death 43.5 33 0.00072 33.7 4.1 60 86-173 253-312 (659)
257 PRK13512 coenzyme A disulfide 42.7 75 0.0016 31.8 6.9 44 110-173 72-118 (438)
258 PRK04965 NADH:flavorubredoxin 42.0 56 0.0012 31.9 5.8 45 105-173 68-112 (377)
259 PLN02507 glutathione reductase 41.3 83 0.0018 32.2 7.1 53 97-173 126-180 (499)
260 TIGR01372 soxA sarcosine oxida 41.3 62 0.0013 36.3 6.5 64 96-180 352-421 (985)
261 PF06100 Strep_67kDa_ant: Stre 41.3 63 0.0014 32.7 5.8 25 101-126 213-237 (500)
262 PRK12844 3-ketosteroid-delta-1 41.2 99 0.0021 32.1 7.7 29 95-124 208-236 (557)
263 PRK05675 sdhA succinate dehydr 41.0 1.1E+02 0.0024 31.8 8.1 61 95-174 126-191 (570)
264 PTZ00153 lipoamide dehydrogena 40.9 1E+02 0.0022 32.8 7.8 59 97-174 355-429 (659)
265 PRK08958 sdhA succinate dehydr 40.0 1.2E+02 0.0025 31.9 8.0 61 95-174 143-208 (588)
266 PRK08626 fumarate reductase fl 39.7 87 0.0019 33.3 7.1 60 95-174 158-222 (657)
267 COG3486 IucD Lysine/ornithine 39.4 1E+02 0.0023 30.3 6.8 50 109-178 291-346 (436)
268 PRK12810 gltD glutamate syntha 39.1 77 0.0017 32.1 6.4 36 318-358 431-466 (471)
269 PRK12845 3-ketosteroid-delta-1 38.9 1.1E+02 0.0024 31.8 7.6 60 96-175 218-281 (564)
270 COG0445 GidA Flavin-dependent 38.9 41 0.00089 34.4 4.2 63 90-172 90-158 (621)
271 TIGR03385 CoA_CoA_reduc CoA-di 38.5 74 0.0016 31.6 6.1 46 106-172 55-103 (427)
272 TIGR01810 betA choline dehydro 37.4 79 0.0017 32.6 6.3 61 94-173 192-257 (532)
273 KOG2844 Dimethylglycine dehydr 35.9 65 0.0014 33.8 5.0 62 91-173 183-244 (856)
274 PRK05976 dihydrolipoamide dehy 34.4 1.2E+02 0.0026 30.6 7.0 54 103-173 100-155 (472)
275 TIGR03595 Obg_CgtA_exten Obg f 34.1 42 0.00091 23.9 2.6 27 42-68 37-63 (69)
276 PRK07803 sdhA succinate dehydr 33.9 1.3E+02 0.0029 31.7 7.4 61 95-174 138-215 (626)
277 PF13450 NAD_binding_8: NAD(P) 32.6 36 0.00079 23.9 2.0 15 4-18 17-31 (68)
278 PTZ00318 NADH dehydrogenase-li 32.1 1.2E+02 0.0027 30.1 6.5 42 317-358 308-349 (424)
279 PRK12770 putative glutamate sy 31.9 89 0.0019 30.1 5.3 35 318-357 316-350 (352)
280 PRK06116 glutathione reductase 31.6 1.2E+02 0.0025 30.5 6.3 33 317-354 295-327 (450)
281 TIGR02462 pyranose_ox pyranose 31.0 1.6E+02 0.0035 30.4 7.2 58 107-178 225-285 (544)
282 KOG2960 Protein involved in th 30.5 1.7E+02 0.0036 26.1 6.0 37 88-124 150-186 (328)
283 PRK05249 soluble pyridine nucl 30.3 1.6E+02 0.0035 29.5 7.1 51 99-173 98-150 (461)
284 PF09465 LBR_tudor: Lamin-B re 30.3 92 0.002 21.0 3.4 30 111-160 19-48 (55)
285 PLN02815 L-aspartate oxidase 30.1 1.5E+02 0.0033 31.1 6.9 61 95-173 155-223 (594)
286 PRK07395 L-aspartate oxidase; 30.0 1.1E+02 0.0023 31.9 5.8 62 95-173 134-198 (553)
287 PRK08010 pyridine nucleotide-d 29.6 1.7E+02 0.0037 29.2 7.1 27 147-173 105-132 (441)
288 PRK06467 dihydrolipoamide dehy 29.0 1.5E+02 0.0033 29.9 6.7 26 147-172 121-148 (471)
289 PRK12834 putative FAD-binding 28.2 2.1E+02 0.0046 29.6 7.6 64 96-178 149-233 (549)
290 PRK11749 dihydropyrimidine deh 27.8 1.3E+02 0.0028 30.3 5.8 36 318-358 418-453 (457)
291 TIGR02731 phytoene_desat phyto 27.3 63 0.0014 32.4 3.5 32 318-352 421-452 (453)
292 KOG2495 NADH-dehydrogenase (ub 27.2 1.8E+02 0.004 28.9 6.3 47 110-178 287-337 (491)
293 COG1252 Ndh NADH dehydrogenase 26.5 1.2E+02 0.0027 30.0 5.2 60 91-173 53-112 (405)
294 PRK14694 putative mercuric red 26.3 1.7E+02 0.0036 29.6 6.4 43 108-173 109-153 (468)
295 PF09269 DUF1967: Domain of un 25.1 66 0.0014 22.9 2.3 26 42-67 37-62 (69)
296 PRK05312 pdxA 4-hydroxythreoni 24.5 1.1E+02 0.0023 29.5 4.2 38 317-359 207-244 (336)
297 KOG0404 Thioredoxin reductase 24.4 3.6E+02 0.0078 24.4 7.0 57 92-171 67-123 (322)
298 PLN02487 zeta-carotene desatur 24.1 69 0.0015 33.4 3.1 35 318-355 518-552 (569)
299 PRK06416 dihydrolipoamide dehy 24.1 2.3E+02 0.0049 28.5 6.9 33 317-354 301-333 (462)
300 PF00996 GDI: GDP dissociation 23.9 2.8E+02 0.006 27.9 7.1 55 95-169 232-286 (438)
301 TIGR03467 HpnE squalene-associ 23.4 84 0.0018 30.8 3.6 52 4-55 8-66 (419)
302 COG1206 Gid NAD(FAD)-utilizing 23.4 81 0.0017 30.2 3.0 33 89-122 94-126 (439)
303 PRK00232 pdxA 4-hydroxythreoni 23.2 1.3E+02 0.0028 28.9 4.5 38 317-359 202-239 (332)
304 PRK01909 pdxA 4-hydroxythreoni 23.2 1.2E+02 0.0026 29.1 4.2 38 317-359 198-235 (329)
305 TIGR00557 pdxA 4-hydroxythreon 22.8 1.2E+02 0.0027 28.9 4.3 38 317-359 195-232 (320)
306 TIGR01316 gltA glutamate synth 22.8 2.4E+02 0.0053 28.3 6.7 33 318-355 416-448 (449)
307 PRK03371 pdxA 4-hydroxythreoni 22.6 1.2E+02 0.0027 29.0 4.2 38 317-359 201-238 (326)
308 PLN02546 glutathione reductase 22.5 2.2E+02 0.0047 29.7 6.4 50 97-173 180-229 (558)
309 TIGR02061 aprA adenosine phosp 22.0 3.1E+02 0.0066 29.0 7.4 64 95-173 126-192 (614)
310 KOG2311 NAD/FAD-utilizing prot 21.5 1.7E+02 0.0036 29.7 4.9 65 92-171 116-185 (679)
311 COG1995 PdxA Pyridoxal phospha 21.2 1.4E+02 0.003 28.4 4.1 39 317-360 201-239 (332)
312 COG1251 NirB NAD(P)H-nitrite r 21.0 1.7E+02 0.0036 31.3 5.0 49 103-174 67-115 (793)
313 PTZ00306 NADH-dependent fumara 20.0 3.4E+02 0.0074 31.2 7.8 68 96-173 545-621 (1167)
No 1
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-49 Score=392.49 Aligned_cols=372 Identities=33% Similarity=0.563 Sum_probs=298.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||.+.+.... ......++..|+|+++++|+++|+++++.+.+..++.++.+|+.+......+.....
T Consensus 24 ~~G~~v~viE~~~~~~~~~----g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (400)
T PRK08013 24 GSGLRVAVLEQRVPEPLAA----DAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEVWDKDSFGRIAFDDQSM 99 (400)
T ss_pred hCCCEEEEEeCCCCccccc----CCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEEEeCCCCceEEEccccc
Confidence 4699999999999863211 112346788999999999999999999988765577889899876433444443333
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
..++.++.++|..|+++|.+.+.+.++++++++++|++++. +++.++|++.+|++++||+
T Consensus 100 ~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 100 GYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW--------------------GENEAFLTLKDGSMLTARL 159 (400)
T ss_pred CCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--------------------cCCeEEEEEcCCCEEEeeE
Confidence 33445789999999999999999876799999999999977 4467889999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCc-eEEEEEcCccChhHhhC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF-SNIVWTMNPKDASDCKS 241 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~ 241 (439)
||||||.+|.||+.+++......+...++.+.++.+.++ ...++.|.++++++++|+.++. .+++|..+.........
T Consensus 160 vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 239 (400)
T PRK08013 160 VVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQ 239 (400)
T ss_pred EEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHHHc
Confidence 999999999999999998888788888888887765544 4556777888999999997754 57888876654444444
Q ss_pred CCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEE
Q 013625 242 MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 321 (439)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvv 321 (439)
...+.+.+.+...+. +. ++ ..........||+....+++|++|||+
T Consensus 240 ~~~~~~~~~l~~~~~----~~---------------l~---------------~~~~~~~~~~~~l~~~~~~~~~~grv~ 285 (400)
T PRK08013 240 APEEEFNRALAIAFD----NR---------------LG---------------LCELESERQVFPLTGRYARQFAAHRLA 285 (400)
T ss_pred CCHHHHHHHHHHHHh----Hh---------------hC---------------ceEecCCccEEecceeecccccCCcEE
Confidence 566677776665332 00 00 011222234578887789999999999
Q ss_pred EEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHH
Q 013625 322 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLN 401 (439)
Q Consensus 322 LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (439)
|+|||||.|+|++|||+|+||+||..|+++|...+..+.++....+|+.|+++|+++...++..++.+.+++...+++..
T Consensus 286 LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (400)
T PRK08013 286 LVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNPAKK 365 (400)
T ss_pred EEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 99999999999999999999999999999999876555444345689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHhcCCCCCC
Q 013625 402 ILRAAAFHGAQYISPLKRNIISYASGEQRLPL 433 (439)
Q Consensus 402 ~~r~~~~~~~~~~~~l~~~~~~~~~g~~~~p~ 433 (439)
.+|+..++++.++|++++.+++.++|+..+|.
T Consensus 366 ~~R~~~l~~~~~~~~~~~~~~~~~~g~~~~~~ 397 (400)
T PRK08013 366 LLRDIGLKLADTLPGVKPQLIRQAMGLNDLPE 397 (400)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHccCcCCcc
Confidence 99999999999999999999999999765664
No 2
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=6.7e-49 Score=388.82 Aligned_cols=372 Identities=34% Similarity=0.566 Sum_probs=303.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|||+.+..... ...+..++..|+++++++|++||+++++.+....++..+.+|+.++.....++....
T Consensus 25 ~~G~~v~viE~~~~~~~~-----~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (405)
T PRK08850 25 ESDLRIAVIEGQLPEEAL-----NELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVWEQDSFARIEFDAESM 99 (405)
T ss_pred hCCCEEEEEcCCCCcccc-----cCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEEeCCCCceEEEecccc
Confidence 469999999997321110 012357899999999999999999999988655478889999887655555554443
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
..+..|+.++|..|++.|++.+.+.++++|+++++|++++. +++.++|+++||++++||+
T Consensus 100 ~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~--------------------~~~~~~v~~~~g~~~~a~l 159 (405)
T PRK08850 100 AQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV--------------------GESEAWLTLDNGQALTAKL 159 (405)
T ss_pred CCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe--------------------eCCeEEEEECCCCEEEeCE
Confidence 44556899999999999999998876799999999999977 4467889999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCC-CceEEEEEcCccChhHhhC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKDASDCKS 241 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~~~~~~~ 241 (439)
||||||.+|.||+.+++......+...++.+.++.+.++ ...+++|.++++++++|+.+ +..+++|..+.........
T Consensus 160 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~ 239 (405)
T PRK08850 160 VVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLA 239 (405)
T ss_pred EEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHHHc
Confidence 999999999999999998887788888898888765444 55677888999999999986 4568889887665554455
Q ss_pred CCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEE
Q 013625 242 MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 321 (439)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvv 321 (439)
.+.+++.+.+...+...+ + ..........||+....+++|.++||+
T Consensus 240 ~~~~~~~~~l~~~~~~~~-------------------~---------------~~~~~~~~~~~pl~~~~~~~~~~~rv~ 285 (405)
T PRK08850 240 MSDEQFNKALTAEFDNRL-------------------G---------------LCEVVGERQAFPLKMRYARDFVRERVA 285 (405)
T ss_pred CCHHHHHHHHHHHHhhhh-------------------C---------------cEEEcccccEEecceeeccccccCcEE
Confidence 666777777766442000 0 012233444688888888999999999
Q ss_pred EEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHH
Q 013625 322 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLN 401 (439)
Q Consensus 322 LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (439)
|+|||||.|+|+.|||+|+||+||..|+++|......+.+.+...+|+.|+++|++++..++..++.+.++++..+++..
T Consensus 286 LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (405)
T PRK08850 286 LVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPAKK 365 (405)
T ss_pred EEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 99999999999999999999999999999999877555444457899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHhcCC-CCCCC
Q 013625 402 ILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLP 434 (439)
Q Consensus 402 ~~r~~~~~~~~~~~~l~~~~~~~~~g~~-~~p~~ 434 (439)
++|+..+..+..+|++++.+++.++|+. .+|.+
T Consensus 366 ~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~ 399 (405)
T PRK08850 366 LVRGIGMSLAGQLPGAKDEIMKRALGLKGELPEL 399 (405)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHhCCCCCCchh
Confidence 9999999999999999999999999975 46654
No 3
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.7e-48 Score=381.56 Aligned_cols=350 Identities=28% Similarity=0.456 Sum_probs=284.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+|+.+.... .....++++.|+|+++++|+++|+++.+.+.+. ++..+.+++.++.....++..
T Consensus 22 ~~G~~v~l~E~~~~~~~------~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~-- 92 (374)
T PRK06617 22 QKGIKTTIFESKSVKSP------EFFKDIRTTALTPHSKNFLFSIDIWEELEKFVA-EMQDIYVVDNKASEILDLRND-- 92 (374)
T ss_pred cCCCeEEEecCCCCCCC------ccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcC-CCcEEEEEECCCceEEEecCC--
Confidence 56999999999865421 113457899999999999999999999987655 778889999888766666532
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
....+||.++|.+|+++|++.+.+.++++++++++++++.. +++.++|.+.++ +++||+
T Consensus 93 ~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--------------------~~~~v~v~~~~~-~~~adl 151 (374)
T PRK06617 93 ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--------------------HNDYSIIKFDDK-QIKCNL 151 (374)
T ss_pred CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE--------------------cCCeEEEEEcCC-EEeeCE
Confidence 23456899999999999999999988799999999999987 456788999877 999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCc-eEEEEEcCccChhHhhC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF-SNIVWTMNPKDASDCKS 241 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~ 241 (439)
||||||.+|.||+.+++......| ..++.+.++.+.++ ...++.|.+.|+++++|++++. ..++|..+.........
T Consensus 152 vIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~ 230 (374)
T PRK06617 152 LIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVN 230 (374)
T ss_pred EEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHc
Confidence 999999999999999877655555 67788887765554 4467788899999999998875 67889886544333344
Q ss_pred CCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEE
Q 013625 242 MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 321 (439)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvv 321 (439)
.+.+.+.+.+...+. +..+ . .........||+....+.+|++|||+
T Consensus 231 ~~~~~~~~~~~~~~~-------------------~~~~--------------~-i~~~~~~~~~~l~~~~~~~~~~grv~ 276 (374)
T PRK06617 231 LPVEEVRFLTQRNAG-------------------NSLG--------------K-ITIDSEISSFPLKARIANRYFHNRIV 276 (374)
T ss_pred CCHHHHHHHHHHhhc-------------------hhcC--------------c-eeeccceeEEEeeeeeccceecCCEE
Confidence 555555554443211 0000 0 12223455789988889999999999
Q ss_pred EEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHH
Q 013625 322 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLN 401 (439)
Q Consensus 322 LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (439)
|+|||||.|+|+.|||+|+||+||..|+++|.. ..+|+.|+++|+++...++..++.+.++++...++..
T Consensus 277 LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~~~~ 346 (374)
T PRK06617 277 LIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSKNLR 346 (374)
T ss_pred EEEcccccCCCCccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999999999999999999999831 2479999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHhcC
Q 013625 402 ILRAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 402 ~~r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
.+|+..+..+.++|++|+.++++++|.
T Consensus 347 ~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 347 CLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 999999999999999999999999986
No 4
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=7.3e-48 Score=381.72 Aligned_cols=374 Identities=36% Similarity=0.638 Sum_probs=295.0
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|||+.+..... .........+++.|+|+++++|+++|+++++.+....++..+.+++.++.....++....
T Consensus 23 ~~G~~v~viE~~~~~~~~--~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (405)
T PRK05714 23 GSGLEVLLLDGGPLSVKP--FDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEMQVWDGSGTGQIHFSAASV 100 (405)
T ss_pred cCCCEEEEEcCCCccccc--cccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeEEEEcCCCCceEEeccccc
Confidence 579999999999742100 000112345788999999999999999999987655467888899988766666654333
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
..+..++.++|..|.+.|.+.+.+.+ ++|+++++|++++. +++.++|++++|++++||+
T Consensus 101 ~~~~~g~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~a~~ 159 (405)
T PRK05714 101 HAEVLGHIVENRVVQDALLERLHDSD-IGLLANARLEQMRR--------------------SGDDWLLTLADGRQLRAPL 159 (405)
T ss_pred CCCccEEEEEhHHHHHHHHHHHhcCC-CEEEcCCEEEEEEE--------------------cCCeEEEEECCCCEEEeCE
Confidence 33456789999999999999999886 99999999999987 4567889999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCC----ceEEEEEcCccChhH
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDN----FSNIVWTMNPKDASD 238 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~----~~~~~~~~~~~~~~~ 238 (439)
||||||.+|.||+.+++......+...++.+.+....++ ...++.+.+.++++++|++++ ...++|..+......
T Consensus 160 vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 239 (405)
T PRK05714 160 VVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAER 239 (405)
T ss_pred EEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHH
Confidence 999999999999999887766666666666665544333 456777889999999998642 234567766554444
Q ss_pred hhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccC
Q 013625 239 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 318 (439)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (439)
....+.+.+.+.+.+.|... ++ .+.. ......||+....+++|+++
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~-------------------~~--------------~~~~-~~~~~~~~l~~~~~~~~~~~ 285 (405)
T PRK05714 240 LMALDDDAFCAALERAFEGR-------------------LG--------------EVLS-ADPRLCVPLRQRHAKRYVEP 285 (405)
T ss_pred HHCCCHHHHHHHHHHHHHHH-------------------hC--------------Ccee-cCCccEEecceeehhhhccC
Confidence 44456677777776644300 00 0111 12234578888889999999
Q ss_pred CEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCC
Q 013625 319 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 398 (439)
Q Consensus 319 rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~ 398 (439)
||+|+|||||+|+|+.|||+|+||+||..|+++|..+...+.+.+...+|+.|+++|++++..++..++.+.++++..++
T Consensus 286 rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~ 365 (405)
T PRK05714 286 GLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPL 365 (405)
T ss_pred CEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 99999999999999999999999999999999998876544344446899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccChhHHHHHHHHHhcC-CCCCCC
Q 013625 399 PLNILRAAAFHGAQYISPLKRNIISYASGE-QRLPLP 434 (439)
Q Consensus 399 ~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~-~~~p~~ 434 (439)
+...+|+..++.+...|++++.++++++|. +.+|.+
T Consensus 366 ~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~ 402 (405)
T PRK05714 366 PLRWLRNTGLKLVDQMPEAKALFVRQALGLSGDLPEL 402 (405)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCCCchh
Confidence 999999999999999999999999999996 467764
No 5
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.3e-47 Score=382.39 Aligned_cols=402 Identities=44% Similarity=0.767 Sum_probs=307.5
Q ss_pred CCcEEEEEcCCCCCCCCC--CCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC
Q 013625 5 KHLSVAIIDSNPALGKSN--FIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 5 ~G~~V~viE~~~~~~~~~--~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
+|++|+|||+++.+...+ ..........+++.|+|+++++|+++|+++++.+.+..++..+.++++.+.....++...
T Consensus 26 ~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (437)
T TIGR01989 26 KDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRFDRDN 105 (437)
T ss_pred CCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhcCCceeeEEEecCCCCceEEeecCC
Confidence 699999999976553210 000001135689999999999999999999998876557788889988766666665432
Q ss_pred CCCccceeeeehHHHHHHHHHHhhcCC--CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEE
Q 013625 83 VNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 160 (439)
Q Consensus 83 ~~~~~~~~~i~R~~l~~~L~~~~~~~~--~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ 160 (439)
...+.++.++|..|++.|.+.+.+.+ +++++++++|++++....+ ++ +++..++|++.+|++++
T Consensus 106 -~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~------~~-------~~~~~v~v~~~~g~~i~ 171 (437)
T TIGR01989 106 -GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY------PN-------DNSNWVHITLSDGQVLY 171 (437)
T ss_pred -CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc------cc-------CCCCceEEEEcCCCEEE
Confidence 23456789999999999999999876 6999999999999751000 00 13467899999999999
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeec-CC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhH
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-EN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASD 238 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 238 (439)
||+||||||.+|.||+.+++......|...++.+.+..+. ++ ...++.|.++|+++++|++++..+++|..+......
T Consensus 172 a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~~~~~~~~~~~~~~~~~ 251 (437)
T TIGR01989 172 TKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPDNNSTLVWSTSPEEALR 251 (437)
T ss_pred eeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999888888888888887653 23 677888899999999999998889999987766655
Q ss_pred hhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccc---cccccccCCcceeeecc-cceeeecccccccc
Q 013625 239 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATL---SAKECFEVPPRVVKLAS-ERMVFPLSLKHANN 314 (439)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (439)
....+.+++.+.+...+..++.+.+.... ....++.+...... .....+..++.+..+.. ....||+....+++
T Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (437)
T TIGR01989 252 LLSLPPEDFVDALNAAFDLGYSDHPYSYL--LDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADE 329 (437)
T ss_pred HHcCCHHHHHHHHHHHhcccccccccccc--cccccccccccccccccccccccccCchhheeecccceeEEecccchhh
Confidence 56678888888887776332322211000 00001111111000 00011112232333222 33568998888999
Q ss_pred cccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 013625 315 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 394 (439)
Q Consensus 315 ~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~ 394 (439)
|..+||+|+|||||.++|++|||+|+||+||..|+++|....+.+.+++...+|+.|+++|++++..++..++.+.+++.
T Consensus 330 ~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~ 409 (437)
T TIGR01989 330 YVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYA 409 (437)
T ss_pred ccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998776655545679999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhhccChhHHHHHH
Q 013625 395 VDFGPLNILRAAAFHGAQYISPLKRNII 422 (439)
Q Consensus 395 ~~~~~~~~~r~~~~~~~~~~~~l~~~~~ 422 (439)
..+++...+|+..+.++..+|++|+.++
T Consensus 410 ~~~~~~~~~R~~~l~~~~~~~~~k~~~~ 437 (437)
T TIGR01989 410 TDFPPVVALRTFGLNLTNYIGPLKNFIM 437 (437)
T ss_pred CCccHHHHHHHHHHHHhhhCHHhHHhhC
Confidence 9999999999999999999999999874
No 6
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=5.5e-47 Score=373.83 Aligned_cols=365 Identities=34% Similarity=0.565 Sum_probs=298.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||.+.+...++ ....+++.|+|+++++|+++|+++.+.+....++..+.+|+.++.....++....
T Consensus 27 ~~G~~v~liE~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (392)
T PRK08773 27 DAGLSVALVEGREPPRWQAD-----QPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRVWDAGGGGELGFDADTL 101 (392)
T ss_pred cCCCEEEEEeCCCCcccccC-----CCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEEEeCCCCceEEechhcc
Confidence 57999999999987643222 2345788999999999999999999987544467788888876555556654443
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
.....+|.++|..|.+.|.+.+.+.+ ++++++++|++++. +++.++|++++|+++.+|+
T Consensus 102 ~~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~a~~ 160 (392)
T PRK08773 102 GREQLGWIVENDLLVDRLWAALHAAG-VQLHCPARVVALEQ--------------------DADRVRLRLDDGRRLEAAL 160 (392)
T ss_pred CCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeEEEEEe--------------------cCCeEEEEECCCCEEEeCE
Confidence 44557899999999999999999876 99999999999987 4567889999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhCC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 242 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||+|||.+|.+|+.+++......+...++.+.++.+.+. ...++.|.++++++++|++++...++|.++..........
T Consensus 161 vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~ 240 (392)
T PRK08773 161 AIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERVLAL 240 (392)
T ss_pred EEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHHHcC
Confidence 999999999999999887665566666777776655444 5567778899999999999988889999876555544556
Q ss_pred CHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEEE
Q 013625 243 NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL 322 (439)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvL 322 (439)
+.+.+.+.+...+.. + .+. + ........||+....+++|.+|||+|
T Consensus 241 ~~~~~~~~l~~~~~~-~------------------~~~--------------~-~~~~~~~~~~l~~~~~~~~~~~rv~L 286 (392)
T PRK08773 241 DEAAFSRELTQAFAA-R------------------LGE--------------V-RVASPRTAFPLRRQLVQQYVSGRVLT 286 (392)
T ss_pred CHHHHHHHHHHHHhh-h------------------hcC--------------e-EecCCccEeechhhhhhhhcCCcEEE
Confidence 777777777765431 1 000 1 11223336788777789999999999
Q ss_pred EcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHHH
Q 013625 323 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNI 402 (439)
Q Consensus 323 vGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (439)
+|||||.|+|+.|||+|+||+||..|+++|.+.+..+.+++...+|+.|+++|+++...++..++.+.+++...+++..+
T Consensus 287 iGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~~~~ 366 (392)
T PRK08773 287 LGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMHLTL 366 (392)
T ss_pred EechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999998876655556678999999999999998888889999999999999999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHhcC
Q 013625 403 LRAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 403 ~r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
+|+..+.++.++|++|+.++++++|.
T Consensus 367 ~r~~~l~~~~~~~~~k~~~~~~~~g~ 392 (392)
T PRK08773 367 LRGSVLGLAGKLPPLVDALWKRASGV 392 (392)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence 99999999999999999999999984
No 7
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.6e-46 Score=367.46 Aligned_cols=361 Identities=32% Similarity=0.489 Sum_probs=306.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|||+.+.. ....++++.|+|+++++|+++|+.+++.+.+.++...+.+++++. ....++....
T Consensus 23 ~~G~~V~l~E~~~~~---------~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 92 (387)
T COG0654 23 RAGLDVTLLERAPRE---------LLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR-RLLIFDAAEL 92 (387)
T ss_pred hCCCcEEEEccCccc---------cccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc-eeEEeccccc
Confidence 579999999999322 134458999999999999999998999998885666665555543 4555555554
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCcEEEec
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGTSLYAK 162 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~~~~ad 162 (439)
....+++.++|.+|.+.|.+.+.+.++++++++++|+.++. +++.+++++. ||++++||
T Consensus 93 ~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--------------------~~~~v~v~l~~dG~~~~a~ 152 (387)
T COG0654 93 GRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ--------------------DGDGVTVTLSFDGETLDAD 152 (387)
T ss_pred CCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--------------------cCCceEEEEcCCCcEEecC
Confidence 45677899999999999999999999899999999999988 4567778888 99999999
Q ss_pred EEEEecCCCchhhhhhC-CCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhh
Q 013625 163 LVVGADGGKSRVRELAG-FKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCK 240 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 240 (439)
|||||||.||.||+.++ .......|...++.+.+..+.++ ...+++|.+.+.+.++|++++...++|+..........
T Consensus 153 llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 232 (387)
T COG0654 153 LLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQ 232 (387)
T ss_pred EEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHh
Confidence 99999999999999999 55556688888999988877444 77888899999999999998888999999988888888
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCE
Q 013625 241 SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRV 320 (439)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv 320 (439)
..+.+.+...+...++..- + + ...........||+....+.+|.++||
T Consensus 233 ~~~~~~~~~~l~~~~~~~~-~----------------~---------------~~~~~~~~~~~~pl~~~~a~~~~~~Rv 280 (387)
T COG0654 233 GLSDEEFLRELQRRLGERD-P----------------L---------------GRVTLVSSRSAFPLSLRVAERYRRGRV 280 (387)
T ss_pred cCCHHHHHHHHHHhcCccc-c----------------c---------------ceEEEccccccccccchhhhheecCcE
Confidence 8888999888888654000 0 0 013444556678999888999999999
Q ss_pred EEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChH
Q 013625 321 VLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPL 400 (439)
Q Consensus 321 vLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (439)
+|+|||||.|+|++|||+|+||+||..|+++|......+.+ ..+|+.|+++|++++..++..++.+.+.+....++.
T Consensus 281 ~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~ 357 (387)
T COG0654 281 VLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFA 357 (387)
T ss_pred EEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHH
Confidence 99999999999999999999999999999999998764332 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHhcCC
Q 013625 401 NILRAAAFHGAQYISPLKRNIISYASGEQ 429 (439)
Q Consensus 401 ~~~r~~~~~~~~~~~~l~~~~~~~~~g~~ 429 (439)
+.+|+..++.+...+.++..+.+...|+.
T Consensus 358 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 386 (387)
T COG0654 358 RFLRNLGLRLLDRLPPLREALARLAAGLV 386 (387)
T ss_pred HHHHHHHHHhhccCccHHHHHHHHhccCC
Confidence 99999999999999999999999888764
No 8
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.6e-46 Score=371.08 Aligned_cols=370 Identities=31% Similarity=0.538 Sum_probs=291.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||++.++. ...++++.|+|+++++|+++|+++++.+.+. ++..+.+++.++.....+...+.
T Consensus 39 ~~G~~v~v~E~~~~~~~--------~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 109 (415)
T PRK07364 39 DSGLRIALIEAQPAEAA--------AAKGQAYALSLLSARIFEGIGVWEKILPQIG-KFRQIRLSDADYPGVVKFQPTDL 109 (415)
T ss_pred cCCCEEEEEecCCcccc--------CCCCcEEEechHHHHHHHHCChhhhhHhhcC-CccEEEEEeCCCCceeeeccccC
Confidence 56999999999998631 1236689999999999999999999988766 66778888777655555554333
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC---cEEE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---TSLY 160 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg---~~~~ 160 (439)
.....++.+.+..|.+.|++.+.+.++++++++++|++++. +++.++|+++++ .+++
T Consensus 110 ~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--------------------~~~~~~v~~~~~~~~~~i~ 169 (415)
T PRK07364 110 GTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY--------------------QQDAATVTLEIEGKQQTLQ 169 (415)
T ss_pred CCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--------------------cCCeeEEEEccCCcceEEe
Confidence 33445676666689999999998877799999999999976 446677888642 3799
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHh
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDC 239 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 239 (439)
||+||||||.+|.||+.+++......+...++.+.+....+. ...+..|.+.++++++|++++..+++|..+.......
T Consensus 170 adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 249 (415)
T PRK07364 170 SKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKAL 249 (415)
T ss_pred eeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHH
Confidence 999999999999999999887766666666677766654433 3344556788999999999888888888654443344
Q ss_pred hCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCC
Q 013625 240 KSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKR 319 (439)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 319 (439)
...+.+++.+.+.+.+. ++.+. + ........||+....+++|.+||
T Consensus 250 ~~~~~~~~~~~l~~~~~-~~~~~--------------------------------~-~~~~~~~~~~~~~~~~~~~~~~r 295 (415)
T PRK07364 250 LALPEAEFLAELQQRYG-DQLGK--------------------------------L-ELLGDRFLFPVQLMQSDRYVQHR 295 (415)
T ss_pred HCCCHHHHHHHHHHHhh-hhhcC--------------------------------c-eecCCCceecchhhhhhhhcCCc
Confidence 45566777777766443 11100 1 11123335777777788999999
Q ss_pred EEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCCh
Q 013625 320 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 399 (439)
Q Consensus 320 vvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~ 399 (439)
|+|||||||+++|++|||+|+||+||..|+++|....+.+.++....+|+.|+++|+++...++..++.+.++++..+++
T Consensus 296 v~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~ 375 (415)
T PRK07364 296 LALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWWP 375 (415)
T ss_pred EEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 99999999999999999999999999999999998765444544468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHhcCC-CCCCCCC
Q 013625 400 LNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPLP 436 (439)
Q Consensus 400 ~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~-~~p~~~~ 436 (439)
..++|+..++++..+|.+++.+++.++|+. .+|.+.+
T Consensus 376 ~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 413 (415)
T PRK07364 376 LVVVRRLGLWLLRHVPPLKRLALRLMTGLKGRTPQLAK 413 (415)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHcCCCccCchhcc
Confidence 999999999999999999999999999976 4766543
No 9
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4.9e-46 Score=365.64 Aligned_cols=360 Identities=31% Similarity=0.587 Sum_probs=284.5
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|||+.+...... ......+++.|+|+++++|++||+++.+.+....++..+.+|+... ....+.....
T Consensus 24 ~~G~~v~l~E~~~~~~~~~----~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 98 (384)
T PRK08849 24 KQGRSVAVIEGGEPKAFEP----SQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLETWEHPE-CRTRFHSDEL 98 (384)
T ss_pred hCCCcEEEEcCCCcccCCC----CCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEEEeCCC-ceEEeccccc
Confidence 4699999999986321000 0012446789999999999999999999875444667777777543 2344443333
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
..+..||.+.|..|+.+|.+++.+.++++++++++|++++. ++++++|+++||.+++||+
T Consensus 99 ~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--------------------~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 99 NLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF--------------------SAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred CCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE--------------------cCCeEEEEECCCCEEEeeE
Confidence 34556788998899999999998877799999999999987 4567899999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhCC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 242 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||||||.+|.||+.+++......|...++.+.+....++ ...++.|.+.|...++|+.++...++|+............
T Consensus 159 vIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~ 238 (384)
T PRK08849 159 VIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLSAM 238 (384)
T ss_pred EEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHHcC
Confidence 999999999999999988777677777666666654443 5667778888898889998877778887654433333345
Q ss_pred CHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEEE
Q 013625 243 NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL 322 (439)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvL 322 (439)
+++.+.+.+...+.. . ++ .+ . ......||+....+++|++|||+|
T Consensus 239 ~~~~~~~~l~~~~~~----~---------------~~--------------~~-~-~~~~~~~~l~~~~~~~~~~grv~L 283 (384)
T PRK08849 239 NPEQLRSEILRHFPA----E---------------LG--------------EI-K-VLQHGSFPLTRRHAQQYVKNNCVL 283 (384)
T ss_pred CHHHHHHHHHHHhhh----h---------------hC--------------cE-E-eccceEeeccccccchhccCCEEE
Confidence 677777777775430 0 00 01 1 123346888877899999999999
Q ss_pred EcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHHH
Q 013625 323 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNI 402 (439)
Q Consensus 323 vGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (439)
+|||||+|+|+.|||+|+||+||..|+++|... +. ..+++|+.|+++|++++..++..++.+.++++..+++...
T Consensus 284 lGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~~--~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (384)
T PRK08849 284 LGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---GV--LNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLTPLKF 358 (384)
T ss_pred EEcccccCCCCccchHhHHHHHHHHHHHHHHhc---CC--CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999999999999998642 22 2378999999999999999999999999999998899999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHhcC
Q 013625 403 LRAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 403 ~r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
+|+..+..+.++|++++.+++.++|+
T Consensus 359 ~R~~~l~~~~~~~~~k~~~~~~~~g~ 384 (384)
T PRK08849 359 VRNAALKLAENSGPLKTQVLKYALGM 384 (384)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHcCC
Confidence 99999999999999999999999984
No 10
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.9e-45 Score=364.52 Aligned_cols=366 Identities=32% Similarity=0.524 Sum_probs=289.6
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcc-----eeEEec
Q 013625 6 HLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLG-----YTKYNA 80 (439)
Q Consensus 6 G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 80 (439)
|++|+||||.+... ....++++.|+|+++++|+++|+++++.+.+. ++..+.+++..+.. ...+..
T Consensus 26 g~~v~liE~~~~~~--------~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (403)
T PRK07333 26 HLPVTVVDAAPAGA--------WSRDPRASAIAAAARRMLEALGVWDEIAPEAQ-PITDMVITDSRTSDPVRPVFLTFEG 96 (403)
T ss_pred CCEEEEEeCCCccc--------CCCCcceEEecHHHHHHHHHCCChhhhhhhcC-cccEEEEEeCCCCCCCccceEEecc
Confidence 59999999998752 12357899999999999999999999988766 67788888755421 123322
Q ss_pred cCCCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEE
Q 013625 81 RDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 160 (439)
Q Consensus 81 ~~~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ 160 (439)
......++++.++|..|++.|.+.+.+.+ ++|+++++|++++. +++.+.|++++|+++.
T Consensus 97 ~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~ 155 (403)
T PRK07333 97 EVEPGEPFAHMVENRVLINALRKRAEALG-IDLREATSVTDFET--------------------RDEGVTVTLSDGSVLE 155 (403)
T ss_pred cccCCCccEEEeEhHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------cCCEEEEEECCCCEEE
Confidence 12223456688999999999999999886 99999999999987 4567889999999999
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHh
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDC 239 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 239 (439)
+|+||+|||.+|.+|+.+++......+...++.+.+....+. ...+..+.+.++++++|++++..+++|..+.......
T Consensus 156 ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~ 235 (403)
T PRK07333 156 ARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERL 235 (403)
T ss_pred eCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHH
Confidence 999999999999999999887666667777777766654433 4566677899999999999988888887654433333
Q ss_pred hCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCC
Q 013625 240 KSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKR 319 (439)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 319 (439)
...+.+.+.+.+...+. .+.. .+ ........||+....+++|+.||
T Consensus 236 ~~~~~~~~~~~l~~~~~-~~~~--------------------------------~~-~~~~~~~~~~~~~~~~~~~~~gr 281 (403)
T PRK07333 236 VALDDLVFEAELEQRFG-HRLG--------------------------------EL-KVLGKRRAFPLGLTLARSFVAPR 281 (403)
T ss_pred HCCCHHHHHHHHHHHhh-hhcC--------------------------------ce-EeccCccEeechhhhhhhccCCC
Confidence 33445556666655443 1100 00 11122235777767789999999
Q ss_pred EEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCCh
Q 013625 320 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 399 (439)
Q Consensus 320 vvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~ 399 (439)
|+|+|||||.++|++|||+|+||+||..|+++|...++.+.+...+.+|+.|+++|+++...++..++.+.++++..+++
T Consensus 282 v~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~ 361 (403)
T PRK07333 282 FALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDSTL 361 (403)
T ss_pred EEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCchH
Confidence 99999999999999999999999999999999998876433334589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHhcCC-CCCCCC
Q 013625 400 LNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPL 435 (439)
Q Consensus 400 ~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~-~~p~~~ 435 (439)
...+|+..++.+..+|++++.+++.++|+. ++|.++
T Consensus 362 ~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 398 (403)
T PRK07333 362 LRSVRDIGLGLVDRLPKLKSFFIRQAAGLTGDTPRLL 398 (403)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhCcCCCCchhh
Confidence 999999999999999999999999999986 677654
No 11
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=1.3e-44 Score=357.07 Aligned_cols=365 Identities=31% Similarity=0.575 Sum_probs=289.0
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|||+.+.....+ ......++..++|+++++|+++|+++++.+....++..+..++..+. ...++....
T Consensus 26 ~~G~~V~liE~~~~~~~~~----~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 100 (391)
T PRK08020 26 QHGFSVAVLEHAAPAPFDA----DSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLETWEWETA-HVVFDAAEL 100 (391)
T ss_pred cCCCEEEEEcCCCCCcccc----cCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEEEeCCCC-eEEeccccc
Confidence 4699999999987542111 11234578999999999999999999998755445666666654332 233333333
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
..+..+|.++|..|++.|.+.+.+.++++++++++|++++. +++.+.|++++|++++||+
T Consensus 101 ~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--------------------~~~~~~v~~~~g~~~~a~~ 160 (391)
T PRK08020 101 KLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR--------------------DDDGWELTLADGEEIQAKL 160 (391)
T ss_pred CCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE--------------------cCCeEEEEECCCCEEEeCE
Confidence 34566789999999999999998875699999999999976 4466889999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhCC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 242 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||+|||.+|.||+.+++......|...++.+.+..+... ...++.|.+.++..++|+.++...++|+............
T Consensus 161 vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~ 240 (391)
T PRK08020 161 VIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQAM 240 (391)
T ss_pred EEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHHCC
Confidence 999999999999999988776677777777777765443 5667778888999999998887888888755433333445
Q ss_pred CHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEEE
Q 013625 243 NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL 322 (439)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvL 322 (439)
+.+++.+.+...++ +. ++ .+... ....||+....+++|..+||+|
T Consensus 241 ~~~~~~~~l~~~~~----~~---------------~~--------------~~~~~--~~~~~pl~~~~~~~~~~~rv~L 285 (391)
T PRK08020 241 SMAQLQQEIAAHFP----AR---------------LG--------------AVTPV--AAGAFPLTRRHALQYVQPGLAL 285 (391)
T ss_pred CHHHHHHHHHHHhh----hh---------------cc--------------ceEec--cccEeecceeehhhhccCcEEE
Confidence 66666666665432 00 00 01111 2345788877789999999999
Q ss_pred EcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHHH
Q 013625 323 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNI 402 (439)
Q Consensus 323 vGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (439)
+|||||.|+|+.|||+|+||+||..|+++|.+..+.+.+.....+|+.|+++|+++...++..++.+.++++...++.+.
T Consensus 286 vGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~ 365 (391)
T PRK08020 286 VGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLPPLRF 365 (391)
T ss_pred EechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999999999999999998765554544578999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHhcC
Q 013625 403 LRAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 403 ~r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
+|+..+..+...|++|+.++++++|+
T Consensus 366 ~R~~~l~~~~~~~~~k~~~~~~~~g~ 391 (391)
T PRK08020 366 ARNLGLMAAQRAGVLKRQALKYALGL 391 (391)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence 99999999999999999999999984
No 12
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=5.1e-45 Score=360.10 Aligned_cols=367 Identities=26% Similarity=0.439 Sum_probs=289.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+||++.++.. .....++++.|+|+++++|+++|+++++...+..+...+.++++.....+.++....
T Consensus 24 ~~G~~v~v~E~~~~~~~~-----~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (392)
T PRK09126 24 GSGLKVTLIERQPLAALA-----DPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVLNGRSPFALTFDARGR 98 (392)
T ss_pred hCCCcEEEEeCCCccccc-----CCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEEcCCCCceeEeehhhc
Confidence 579999999999986311 012345678899999999999999999987765567788888776655555543322
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
.....++.++|..|++.|++.+.+..+++|+++++|++++. .++.+.|.+++|+++.||+
T Consensus 99 ~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~--------------------~~~~~~v~~~~g~~~~a~~ 158 (392)
T PRK09126 99 GADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT--------------------DDDGAQVTLANGRRLTARL 158 (392)
T ss_pred CCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE--------------------cCCeEEEEEcCCCEEEeCE
Confidence 33456788999999999999987655699999999999976 4466888999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhCC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 242 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||||||.+|.||+.+++......++...+.+.+....+. ...+.++..+++++++|+.++..++++..+..........
T Consensus 159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 238 (392)
T PRK09126 159 LVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLAL 238 (392)
T ss_pred EEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcC
Confidence 999999999999999887766666666665555543333 4455666677789999999888888887655443333345
Q ss_pred CHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEEE
Q 013625 243 NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL 322 (439)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvL 322 (439)
+.+.+.+.+...+...+. . .........||+....+++|..+||+|
T Consensus 239 ~~~~~~~~l~~~~~~~~~---------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~rv~L 284 (392)
T PRK09126 239 DPEAFAAEVTARFKGRLG---------------------------------A-MRLVSSRHAYPLVAVYAHRFVAKRFAL 284 (392)
T ss_pred CHHHHHHHHHHHHhhhcc---------------------------------C-eEEcCCCcEeechHHHHHHHhhcceEE
Confidence 667777766664431100 0 011223345777777789999999999
Q ss_pred EcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHHH
Q 013625 323 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNI 402 (439)
Q Consensus 323 vGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (439)
+|||||.++|++|||+|+||+||..|+++|...++.+.+...+.+|+.|+++|++++..++..++.+.++++..+++.+.
T Consensus 285 vGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (392)
T PRK09126 285 IGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRPPARL 364 (392)
T ss_pred EehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999999999999999876444444578999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHhcCC
Q 013625 403 LRAAAFHGAQYISPLKRNIISYASGEQ 429 (439)
Q Consensus 403 ~r~~~~~~~~~~~~l~~~~~~~~~g~~ 429 (439)
+|+.+++.+.++|.+++.+++.++|.+
T Consensus 365 ~r~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (392)
T PRK09126 365 LRRAVLRAANRFPPLKQAIAKQLTGRK 391 (392)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHhcCC
Confidence 999999999999999999999999875
No 13
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=1.8e-44 Score=355.53 Aligned_cols=364 Identities=38% Similarity=0.690 Sum_probs=290.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhh-hhcCccceEEEEeCCCcceeEEeccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ-HRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
.+|++|+|+||.+.++...+ ...++++.|+|+++++|+++|+++++.+ .+. +...+.+++.++.....++...
T Consensus 20 ~~G~~v~v~Er~~~~~~~~~-----~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 93 (385)
T TIGR01988 20 RSGLKIALIEATPAEAAATP-----GFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ-PIRDIHVSDGGSFGALHFDADE 93 (385)
T ss_pred cCCCEEEEEeCCCccccCCC-----CCCcceeecCHHHHHHHHHCCchhhhhhhcCC-CceEEEEEeCCCCceEEechhh
Confidence 56999999999999753322 2346789999999999999999999988 444 7788888888765545554333
Q ss_pred CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEec
Q 013625 83 VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK 162 (439)
Q Consensus 83 ~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ad 162 (439)
...+..++.++|..|++.|++.+.+.++++|+++++|++++. +++.+.+.+++|+++.+|
T Consensus 94 ~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--------------------~~~~~~v~~~~g~~~~~~ 153 (385)
T TIGR01988 94 IGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR--------------------HSDHVELTLDDGQQLRAR 153 (385)
T ss_pred cCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe--------------------cCCeeEEEECCCCEEEee
Confidence 234456789999999999999999887799999999999987 446788999999999999
Q ss_pred EEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhC
Q 013625 163 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS 241 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 241 (439)
+||+|||.+|.+|+.+++......+...++.+.+..+... ...+..+.++++++++|++++..++.|............
T Consensus 154 ~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 233 (385)
T TIGR01988 154 LLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLA 233 (385)
T ss_pred EEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHc
Confidence 9999999999999999877665556566666666554433 344455678889999999998888888876543333344
Q ss_pred CCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEE
Q 013625 242 MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 321 (439)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvv 321 (439)
.+.+++.+.+.+.+. .+.. .+ ........+|+....+++|..+||+
T Consensus 234 ~~~~~~~~~~~~~~~-~~~~--------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (385)
T TIGR01988 234 LSDEEFLAELQRAFG-SRLG--------------------------------AI-TLVGERHAFPLSLTHAKRYVAPRLA 279 (385)
T ss_pred CCHHHHHHHHHHHHh-hhcC--------------------------------ce-EeccCcceeechhhhhhheecCceE
Confidence 566777777766443 0000 01 1122334577777778899999999
Q ss_pred EEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHH
Q 013625 322 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLN 401 (439)
Q Consensus 322 LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (439)
|+|||||.|+|++|||+|+||+||..|+++|...+..+.+.....+|+.|+++|++++..++..++.+..++...++...
T Consensus 280 LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (385)
T TIGR01988 280 LIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFPPLR 359 (385)
T ss_pred EEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 99999999999999999999999999999999877644333347899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHhc
Q 013625 402 ILRAAAFHGAQYISPLKRNIISYASG 427 (439)
Q Consensus 402 ~~r~~~~~~~~~~~~l~~~~~~~~~g 427 (439)
.+|+.+++.+..+|.+++.+++.++|
T Consensus 360 ~~r~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
T TIGR01988 360 LLRNLGLRLLNLLPPLKNFIARYAMG 385 (385)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 99999999999999999999999876
No 14
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.7e-44 Score=355.77 Aligned_cols=355 Identities=28% Similarity=0.487 Sum_probs=291.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcce----eEEe
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGY----TKYN 79 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~ 79 (439)
.+|++|+|||+.+.+ ...+++.++++++++|+++|+++++.+.+. ++..+.+++.++... ..+.
T Consensus 28 ~~G~~v~liE~~~~~-----------~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 95 (388)
T PRK07494 28 RAGASVALVAPEPPY-----------ADLRTTALLGPSIRFLERLGLWARLAPHAA-PLQSMRIVDATGRLIRAPEVRFR 95 (388)
T ss_pred cCCCeEEEEeCCCCC-----------CCcchhhCcHHHHHHHHHhCchhhhHhhcc-eeeEEEEEeCCCCCCCCceEEEc
Confidence 569999999999865 135678899999999999999999987665 678888988766432 2333
Q ss_pred ccCCCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEE
Q 013625 80 ARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 159 (439)
Q Consensus 80 ~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~ 159 (439)
..+....+++|.++|..|++.|.+.+.+.++++ +++++|++++. +++.+.|++++|+++
T Consensus 96 ~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~--------------------~~~~~~v~~~~g~~~ 154 (388)
T PRK07494 96 AAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP--------------------REDEVTVTLADGTTL 154 (388)
T ss_pred HHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE--------------------cCCeEEEEECCCCEE
Confidence 333334566899999999999999999887666 88999999976 456788999999999
Q ss_pred EecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhH
Q 013625 160 YAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASD 238 (439)
Q Consensus 160 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 238 (439)
+||+||+|||.+|.||+.+++......+...++.+.+....++ ...++.+.+.|+++++|++++..+++|.........
T Consensus 155 ~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~ 234 (388)
T PRK07494 155 SARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAER 234 (388)
T ss_pred EEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHH
Confidence 9999999999999999999988877788888888888765444 445666778899999999988888999887665555
Q ss_pred hhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccC
Q 013625 239 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 318 (439)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (439)
....+.+++.+.+...+. .+++. .........||+.....++|.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~-------------------~~l~~---------------~~~~~~~~~~~l~~~~~~~~~~~ 280 (388)
T PRK07494 235 LLALSDAALSAAIEERMQ-------------------SMLGK---------------LTLEPGRQAWPLSGQVAHRFAAG 280 (388)
T ss_pred HHcCCHHHHHHHHHHHHh-------------------hhcCC---------------eEEccCCcEeechHHHHHhhccC
Confidence 455677777777766432 11110 11223345688888878999999
Q ss_pred CEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCC
Q 013625 319 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 398 (439)
Q Consensus 319 rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~ 398 (439)
||+|+|||||.++|++|||+|+||+||..|+++|.... .+.....+|+.|+++|+++...++..++.+.+++....+
T Consensus 281 rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~ 357 (388)
T PRK07494 281 RTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFL 357 (388)
T ss_pred ceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999999999999999998742 233457899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccChhHHHHHHHHHhcC
Q 013625 399 PLNILRAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 399 ~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
+...+|+..+..+...|++++.++++++|-
T Consensus 358 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~ 387 (388)
T PRK07494 358 PVQDLRAAGLHLLYSFGPLRRLFMREGLGP 387 (388)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999985
No 15
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-44 Score=351.64 Aligned_cols=348 Identities=29% Similarity=0.464 Sum_probs=280.8
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCCCC
Q 013625 6 HLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNK 85 (439)
Q Consensus 6 G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (439)
|++|+|+|+.+.+. ....++++.|+++++++|+++|++++. +. ++..+.+++........+...+...
T Consensus 38 g~~v~l~e~~~~~~--------~~~~~r~~~l~~~~~~~L~~lg~~~~~---~~-~~~~~~~~~~~~~g~~~~~~~~~~~ 105 (398)
T PRK06996 38 ALSIALIDAREPAA--------SANDPRAIALSHGSRVLLETLGAWPAD---AT-PIEHIHVSQRGHFGRTLIDRDDHDV 105 (398)
T ss_pred CceEEEecCCCCCc--------CCCCceEEEecHHHHHHHHhCCCchhc---CC-cccEEEEecCCCCceEEecccccCC
Confidence 57899999987642 134578999999999999999999873 22 5667777764433333444444444
Q ss_pred ccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC---cEEEec
Q 013625 86 EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---TSLYAK 162 (439)
Q Consensus 86 ~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg---~~~~ad 162 (439)
+..||.++|..|++.|.+.+.+.+ +++++++++++++. ++.++++++.+| ++++||
T Consensus 106 ~~~g~~v~r~~l~~~L~~~~~~~g-~~~~~~~~v~~~~~--------------------~~~~v~v~~~~~~g~~~i~a~ 164 (398)
T PRK06996 106 PALGYVVRYGSLVAALARAVRGTP-VRWLTSTTAHAPAQ--------------------DADGVTLALGTPQGARTLRAR 164 (398)
T ss_pred CcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeeeeeee--------------------cCCeEEEEECCCCcceEEeee
Confidence 556899999999999999999987 99999999999976 557789998865 589999
Q ss_pred EEEEecCC-CchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCc---eEEEEEcCccChh
Q 013625 163 LVVGADGG-KSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF---SNIVWTMNPKDAS 237 (439)
Q Consensus 163 lvVgADG~-~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~---~~~~~~~~~~~~~ 237 (439)
+||||||. +|.+|+.+++......+...++.+.++.+.+. ...++.+.+.|++.++|++++. .+++|+..+....
T Consensus 165 lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~ 244 (398)
T PRK06996 165 IAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAA 244 (398)
T ss_pred EEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHH
Confidence 99999997 58889999988888888999999988876444 4566677889999999998653 6778877655544
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccccccc
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (439)
.....+.+.+.+.+...+.. + . ..+.. ......|++....+++|.+
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~-~------------------~--------------~~~~~-~~~~~~~~l~~~~~~~~~~ 290 (398)
T PRK06996 245 RRAALPDDAFLAELGAAFGT-R------------------M--------------GRFTR-IAGRHAFPLGLNAARTLVN 290 (398)
T ss_pred HHHcCCHHHHHHHHHHHhcc-c------------------c--------------CceEE-ecceEEEeeecccccceec
Confidence 44556777888888775431 0 0 00111 1223357888777899999
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 397 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~ 397 (439)
|||+|+|||||.++|++|||+|+||+||..||++|... + + ...+|+.|+++|+++...++..++.+.++++..+
T Consensus 291 grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~-~--~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~ 364 (398)
T PRK06996 291 GRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G-A--TPLALATFAARRALDRRVTIGATDLLPRLFTVDS 364 (398)
T ss_pred CCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C-C--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999752 2 2 2678999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhccChhHHHHHHHHHh
Q 013625 398 GPLNILRAAAFHGAQYISPLKRNIISYAS 426 (439)
Q Consensus 398 ~~~~~~r~~~~~~~~~~~~l~~~~~~~~~ 426 (439)
++...+|+..+..+..+|++++.+++.++
T Consensus 365 ~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 365 RPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred hHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 99999999999999999999999999998
No 16
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.2e-43 Score=349.29 Aligned_cols=360 Identities=31% Similarity=0.520 Sum_probs=283.0
Q ss_pred CCC-cEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC
Q 013625 4 TKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 4 ~~G-~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
++| ++|+|+||.+.++... ...++++.|+|+++++|+++|+++++...+. +...+.+++..+.....++..+
T Consensus 20 ~~G~~~v~v~E~~~~~~~~~------~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (382)
T TIGR01984 20 RLGKIKIALIEANSPSAAQP------GFDARSLALSYGSKQILEKLGLWPKLAPFAT-PILDIHVSDQGHFGATHLRASE 92 (382)
T ss_pred cCCCceEEEEeCCCccccCC------CCCCeeEeccHHHHHHHHHCCChhhhHhhcC-ccceEEEEcCCCCceEEechhh
Confidence 579 9999999999885321 1246789999999999999999999987665 5566767665433333343323
Q ss_pred CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEec
Q 013625 83 VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK 162 (439)
Q Consensus 83 ~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ad 162 (439)
...+..+|.++|..|++.|.+.+.+.++++++++++|++++. +++.++|++++|+++.||
T Consensus 93 ~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--------------------~~~~~~v~~~~g~~~~ad 152 (382)
T TIGR01984 93 FGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR--------------------NQDYVRVTLDNGQQLRAK 152 (382)
T ss_pred cCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--------------------cCCeEEEEECCCCEEEee
Confidence 334456789999999999999998854599999999999986 446788999999999999
Q ss_pred EEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCC-ceEEEEEcCccChhHhh
Q 013625 163 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDN-FSNIVWTMNPKDASDCK 240 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~~~~~~~ 240 (439)
+||+|||.+|.||+.+++......++..++...+....+. ...+..+.++++++++|.+++ ...++|..+........
T Consensus 153 ~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 232 (382)
T TIGR01984 153 LLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIA 232 (382)
T ss_pred EEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHH
Confidence 9999999999999999877666666667777766654333 334455677888999999887 77777777554433344
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCE
Q 013625 241 SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRV 320 (439)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv 320 (439)
..+.+.+.+.+.+.+. +. .. .+. .......|++.....++|.++||
T Consensus 233 ~~~~~~~~~~~~~~~~----~~---------------~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~rv 278 (382)
T TIGR01984 233 NLPDAEFLAELQQAFG----WR---------------LG--------------KIT-QVGERKTYPLKLRIAETHVHPRV 278 (382)
T ss_pred cCCHHHHHHHHHHHHh----hh---------------cc--------------CeE-EcCCccEeecchhhhhheecCCE
Confidence 5566677777766432 10 00 011 12233457877777889999999
Q ss_pred EEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChH
Q 013625 321 VLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPL 400 (439)
Q Consensus 321 vLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (439)
+|+|||||+|+|++|||+|+||+||..|+++|..... +...+.+|+.|+++|+++...++..+..+..++...+++.
T Consensus 279 ~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~---~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (382)
T TIGR01984 279 VLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI---DLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIPLL 355 (382)
T ss_pred EEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc---CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 9999999999999999999999999999999987642 2234789999999999999999999999999999988899
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHhc
Q 013625 401 NILRAAAFHGAQYISPLKRNIISYASG 427 (439)
Q Consensus 401 ~~~r~~~~~~~~~~~~l~~~~~~~~~g 427 (439)
..+|+..++.+.++|.+++.+++.++|
T Consensus 356 ~~~r~~~~~~~~~~p~~~~~~~~~~~~ 382 (382)
T TIGR01984 356 RALRNLGLLALENFPPLKKRLARQAMG 382 (382)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 999999999999999999999998876
No 17
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.7e-42 Score=342.54 Aligned_cols=364 Identities=27% Similarity=0.476 Sum_probs=282.6
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCCC
Q 013625 5 KHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVN 84 (439)
Q Consensus 5 ~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (439)
+|++|+||||...... .....+++++.|+|+++++|+++|+++++.+.+. ++..+.+++.+......+......
T Consensus 28 ~G~~v~v~E~~~~~~~-----~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 101 (395)
T PRK05732 28 GGLPVALIEAFAPESD-----AHPGFDARAIALAAGTCQQLARLGVWQALADCAT-PITHIHVSDRGHAGFVRLDAEDYG 101 (395)
T ss_pred CCCEEEEEeCCCcccc-----cCCCCCccceeccHHHHHHHHHCCChhhhHhhcC-CccEEEEecCCCCceEEeehhhcC
Confidence 4999999999642211 0112356799999999999999999999988766 566666665443333333322333
Q ss_pred CccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEE
Q 013625 85 KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 164 (439)
Q Consensus 85 ~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlv 164 (439)
.+..++.++|.+|++.|.+.+.+.++++++++++|+++.. +++.+.|++++|.++.+|+|
T Consensus 102 ~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~--------------------~~~~~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 102 VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER--------------------TQGSVRVTLDDGETLTGRLL 161 (395)
T ss_pred CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE--------------------cCCeEEEEECCCCEEEeCEE
Confidence 3445788999999999999998876699999999999976 45678899999999999999
Q ss_pred EEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhCCC
Q 013625 165 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMN 243 (439)
Q Consensus 165 VgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 243 (439)
|+|||.+|.||+.+++......++..++...+...... ...+..+.+.++++++|.+++...++|+.+..........+
T Consensus 162 I~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~ 241 (395)
T PRK05732 162 VAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWS 241 (395)
T ss_pred EEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCC
Confidence 99999999999999887766666667776666544332 34455567888899999999988888887655443334456
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEEEE
Q 013625 244 EDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 323 (439)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvLv 323 (439)
.+.+.+.+...+. | ..+ .+. .......|++.....++|.+|||+|+
T Consensus 242 ~~~~~~~~~~~~~--~-----------------~~~--------------~~~-~~~~~~~~~l~~~~~~~~~~grv~Lv 287 (395)
T PRK05732 242 DAQFLAELQQAFG--W-----------------RLG--------------RIT-HAGKRSAYPLALVTAAQQISHRLALV 287 (395)
T ss_pred HHHHHHHHHHHHH--h-----------------hhc--------------cee-ecCCcceecccccchhhhccCcEEEE
Confidence 6667766666432 1 000 011 11123356777667788999999999
Q ss_pred cccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHHHH
Q 013625 324 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNIL 403 (439)
Q Consensus 324 GDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (439)
|||||.++|++|||+|+||+||..||++|...++.+.+.....+|+.|+++|+++...++..++.+.+++...+++...+
T Consensus 288 GDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (395)
T PRK05732 288 GNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWAPLVVG 367 (395)
T ss_pred eecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999987654433333689999999999999999999999999999988999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHhcC
Q 013625 404 RAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 404 r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
|+..+..+..+|++++.+++.++|.
T Consensus 368 r~~~~~~~~~~~~~~~~~~~~~~~~ 392 (395)
T PRK05732 368 RNLGLMAMDLLPPARDWLARRTLGW 392 (395)
T ss_pred HHHHHHHHccCHHHHHHHHHHHhcc
Confidence 9999999999999999999999985
No 18
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=338.66 Aligned_cols=362 Identities=28% Similarity=0.458 Sum_probs=281.5
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+||.+.++..++ ...++++.++|+++++|+++|+++++......++..+.+++.+. ....+.....
T Consensus 26 ~~G~~v~v~E~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 99 (388)
T PRK07608 26 QSGLRVALLAPRAPPRPADD-----AWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVFGDAH-ARLHFSAYQA 99 (388)
T ss_pred hCCCeEEEEecCCCccccCC-----CCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEEECCC-ceeEeecccc
Confidence 46999999999998754332 33567899999999999999999998765554667777776543 2333332222
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
..+...+.++|..|+++|.+.+++.++++++ +++|++++. .++.+.|++++|.++.||+
T Consensus 100 ~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~--------------------~~~~~~v~~~~g~~~~a~~ 158 (388)
T PRK07608 100 GVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEV--------------------DPDAATLTLADGQVLRADL 158 (388)
T ss_pred CCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe--------------------cCCeEEEEECCCCEEEeeE
Confidence 2344568899999999999999988778998 999999976 4466889999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhCC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 242 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 242 (439)
||+|||.+|.||+.++.......+...++.+.++.+... ...+.++.++++++++|++++...++|.............
T Consensus 159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 238 (388)
T PRK07608 159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLAL 238 (388)
T ss_pred EEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCC
Confidence 999999999999999887666566556666666655433 4456667788999999999988877777654433333345
Q ss_pred CHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEEE
Q 013625 243 NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL 322 (439)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvL 322 (439)
+++++.+.+...+.. .. ..+ ........||+....+++|.++||+|
T Consensus 239 ~~~~~~~~~~~~~~~-------------------~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~rv~l 284 (388)
T PRK07608 239 SPEALAARVERASGG-------------------RL--------------GRL-ECVTPAAGFPLRLQRVDRLVAPRVAL 284 (388)
T ss_pred CHHHHHHHHHHHHHH-------------------hc--------------CCc-eecCCcceeecchhhhhhhhcCceEE
Confidence 666676666653320 00 001 11122234777777789999999999
Q ss_pred EcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHHH
Q 013625 323 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNI 402 (439)
Q Consensus 323 vGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (439)
+|||||+|+|++|||+|+||+||..||++|......+ +.....+|+.|+++|++++..++..++.+..+++..+++...
T Consensus 285 iGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (388)
T PRK07608 285 VGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-DLGDLRLLRRYERARREDILALQVATDGLQRLFALPGPLARW 363 (388)
T ss_pred EeccccccCCccccccchhHHHHHHHHHHHHHhhccC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999999999999999999998764221 223468999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHhc
Q 013625 403 LRAAAFHGAQYISPLKRNIISYASG 427 (439)
Q Consensus 403 ~r~~~~~~~~~~~~l~~~~~~~~~g 427 (439)
+|+..++.+..+|.+++.++++++|
T Consensus 364 ~r~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07608 364 LRNAGMALVGALPLVKRWLVRHALG 388 (388)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhcC
Confidence 9999999999999999999999876
No 19
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=342.63 Aligned_cols=358 Identities=17% Similarity=0.213 Sum_probs=278.3
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCc-ceeEEeccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGL-GYTKYNARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (439)
.+|++|+|||+.+.. ....++..|+|+++++|+++|+++++.+.+..++..+.+++.++. ....++...
T Consensus 27 ~~G~~v~liE~~~~~----------~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (407)
T PRK06185 27 RAGVDVTVLEKHADF----------LRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGRTVTLADFSRLP 96 (407)
T ss_pred hCCCcEEEEecCCcc----------CccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCeEEEecchhhcC
Confidence 469999999999765 234578999999999999999999998766556778888765432 222333212
Q ss_pred CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCce---eEEEeCCCc-E
Q 013625 83 VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL---AKLDLSDGT-S 158 (439)
Q Consensus 83 ~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---v~v~~~dg~-~ 158 (439)
...++++.++|..|.+.|.+.+.+.++++++++++|+++.. +++. +.+...+|+ +
T Consensus 97 -~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~--------------------~~~~v~~v~~~~~~g~~~ 155 (407)
T PRK06185 97 -TPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE--------------------EGGRVTGVRARTPDGPGE 155 (407)
T ss_pred -CCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE--------------------eCCEEEEEEEEcCCCcEE
Confidence 12356778999999999999998876699999999999976 2222 455556775 8
Q ss_pred EEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChh
Q 013625 159 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDAS 237 (439)
Q Consensus 159 ~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 237 (439)
++||+||+|||.+|.||+.+++......+....+.+.++..... ...+++|.++++++++|.+ +..+++|..+.....
T Consensus 156 i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~-~~~~i~~~~~~~~~~ 234 (407)
T PRK06185 156 IRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRG-DYWQCGYVIPKGGYA 234 (407)
T ss_pred EEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCC-CeEEEEEEecCCCch
Confidence 99999999999999999999988776666655554444432222 2456778899999999997 778899998776654
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccccccc
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (439)
.....+.+.+.+.+...++ .+...++. .........||+....+++|.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~p----------------~~~~~l~~---------------~~~~~~~~~~~l~~~~~~~~~~ 283 (407)
T PRK06185 235 ALRAAGLEAFRERVAELAP----------------ELADRVAE---------------LKSWDDVKLLDVRVDRLRRWHR 283 (407)
T ss_pred hhhhhhHHHHHHHHHHhCc----------------cHHHHHhh---------------cCCccccEEEEEeccccccccC
Confidence 4445566777776665432 11111110 1112334567888888899999
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 397 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~ 397 (439)
+|++|+|||||.++|++|||+|+||+||..|++.|.+.++.+ +. ...+|+.|+++|+++...++..++.+.+++...+
T Consensus 284 ~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~-~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 361 (407)
T PRK06185 284 PGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RV-SDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPA 361 (407)
T ss_pred CCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-Cc-cHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999987655 32 3589999999999999999999999999999988
Q ss_pred --ChHHHHHHHHHHhhccChhHHHHHHHHHh
Q 013625 398 --GPLNILRAAAFHGAQYISPLKRNIISYAS 426 (439)
Q Consensus 398 --~~~~~~r~~~~~~~~~~~~l~~~~~~~~~ 426 (439)
++...+|+..|..+.+.|++++.+++++.
T Consensus 362 ~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 392 (407)
T PRK06185 362 LAGRGPLGPPLLLRLLNRLPWLRRLPARLVG 392 (407)
T ss_pred ccCccccCCchHHHHHHhChhHHHhhHHheE
Confidence 99999999999999999999999999863
No 20
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=8.8e-42 Score=348.94 Aligned_cols=355 Identities=22% Similarity=0.329 Sum_probs=272.3
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
..|++|+||||.+.+ ...++++.++++++++|+++|+++++.+.+. +...+.+++.++.....++....
T Consensus 31 ~~G~~v~v~Er~~~~----------~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 99 (538)
T PRK06183 31 QYGVRVLVLERWPTL----------YDLPRAVGIDDEALRVLQAIGLADEVLPHTT-PNHGMRFLDAKGRCLAEIARPST 99 (538)
T ss_pred HCCCcEEEEecCCCC----------CCCCceeeeCHHHHHHHHHcCChhHHHhhcc-cCCceEEEcCCCCEEEEEcCCCC
Confidence 469999999999987 4567799999999999999999999998776 56678888877766656552111
Q ss_pred C--CccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC--CC--c
Q 013625 84 N--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DG--T 157 (439)
Q Consensus 84 ~--~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg--~ 157 (439)
. ..+..+.++|..|++.|.+.+.+.++++|+++++|+++++ ++++++|+++ +| .
T Consensus 100 ~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~--------------------~~~~v~v~~~~~~G~~~ 159 (538)
T PRK06183 100 GEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ--------------------DDDGVTVTLTDADGQRE 159 (538)
T ss_pred CCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE--------------------cCCeEEEEEEcCCCCEE
Confidence 1 1222367899999999999998876699999999999987 4466888876 56 4
Q ss_pred EEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecC--C-ceeEEEEecCCceEEeecCCCceEEEEEcCcc
Q 013625 158 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--N-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPK 234 (439)
Q Consensus 158 ~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~ 234 (439)
+++||+||||||.+|.||+.+++......+...++.+.+..... . ...+.++.+++.++++|++++..++.+.....
T Consensus 160 ~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~ 239 (538)
T PRK06183 160 TVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPG 239 (538)
T ss_pred EEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCC
Confidence 89999999999999999999998877666666666555432211 1 34456677889999999988877766665433
Q ss_pred ChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccc
Q 013625 235 DASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANN 314 (439)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (439)
+... .....+.+.+.+.. |...+ . ..++ .+...|.+....+++
T Consensus 240 ~~~~-~~~~~~~~~~~l~~-----~~~~~-----------------------------~-~~~~-~~~~~~~~~~~~a~~ 282 (538)
T PRK06183 240 ETEE-QLASPENVWRLLAP-----WGPTP-----------------------------D-DAEL-IRHAVYTFHARVADR 282 (538)
T ss_pred CChh-hcCCHHHHHHHHHh-----hCCCC-----------------------------c-ceEE-EEEEeeeEccEEhhh
Confidence 2111 11123333333322 11000 0 0111 122346666667899
Q ss_pred cccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 013625 315 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 394 (439)
Q Consensus 315 ~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~ 394 (439)
|.+|||+|+|||||.|+|++|||+|+||+||..|+++|...++.. ....+|+.|+++|++++..++..+..+.++++
T Consensus 283 ~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~---~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~ 359 (538)
T PRK06183 283 WRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR---AGDALLDTYEQERRPHARAMIDLAVRLGRVIC 359 (538)
T ss_pred hccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999876532 23789999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhhccChhHHHHHHHHHhcCC
Q 013625 395 VDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 429 (439)
Q Consensus 395 ~~~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~ 429 (439)
..++....+|+.+++.+...|.+++.++...++..
T Consensus 360 ~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (538)
T PRK06183 360 PTDRLAAALRDAVLRALNYLPPLKRYVLEMRFKPM 394 (538)
T ss_pred CCCHHHHHHHHHHHHhhhcCcchhhhhhhccCCCC
Confidence 99999999999999999999999999999887754
No 21
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=333.45 Aligned_cols=361 Identities=16% Similarity=0.177 Sum_probs=262.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+||.+..+ ..++++.++++++++|+++|+++++.+.+. ++..+.+++.+|.....++....
T Consensus 21 ~~G~~v~v~E~~~~~~----------~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 89 (391)
T PRK07588 21 RYGHEPTLIERAPELR----------TGGYMVDFWGVGYEVAKRMGITDQLREAGY-QIEHVRSVDPTGRRKADLNVDSF 89 (391)
T ss_pred HCCCceEEEeCCCCcc----------CCCeEEeccCcHHHHHHHcCCHHHHHhccC-CccceEEEcCCCCEEEEecHHHc
Confidence 4699999999998763 345689999999999999999999998776 67888899887765555553322
Q ss_pred CC--ccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEe
Q 013625 84 NK--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYA 161 (439)
Q Consensus 84 ~~--~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~a 161 (439)
.. ....+.++|..|++.|++.+.. +++|+++++|++++. ++++++|++++|+++++
T Consensus 90 ~~~~g~~~~~i~r~~l~~~L~~~~~~--~v~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~~ 147 (391)
T PRK07588 90 RRMVGDDFTSLPRGDLAAAIYTAIDG--QVETIFDDSIATIDE--------------------HRDGVRVTFERGTPRDF 147 (391)
T ss_pred cccCCCceEEEEHHHHHHHHHHhhhc--CeEEEeCCEEeEEEE--------------------CCCeEEEEECCCCEEEe
Confidence 21 1123679999999999997753 499999999999987 45778999999999999
Q ss_pred cEEEEecCCCchhhhhhCCCCCC-C-cCCCeEEEEEEEeecC-CceeEEEEe-cCCceEEeecCCCceEEEEEcCccChh
Q 013625 162 KLVVGADGGKSRVRELAGFKTTG-W-SYSQNAIICTVEHNKE-NYCAWQRFL-PAGPIALLPIGDNFSNIVWTMNPKDAS 237 (439)
Q Consensus 162 dlvVgADG~~S~vR~~l~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~ 237 (439)
|+||||||++|.||+.+...... . ..+...+...++...+ ....+..+. ++++++++|+.++...++|.......
T Consensus 148 d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~- 226 (391)
T PRK07588 148 DLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHD- 226 (391)
T ss_pred CEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCc-
Confidence 99999999999999986332221 1 1222222222221111 233344444 55678899998877666666543321
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccccccc
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (439)
....+.+...+.+.+.+. +|.+.. ..+++.. .........++....+++|.+
T Consensus 227 -~~~~~~~~~~~~l~~~~~-~~~~~~-------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~w~~ 278 (391)
T PRK07588 227 -NPPLTPAEEKQLLRDQFG-DVGWET-------PDILAAL-------------------DDVEDLYFDVVSQIRMDRWSR 278 (391)
T ss_pred -cccCCHHHHHHHHHHHhc-cCCccH-------HHHHHhh-------------------hcccchheeeeeeeccCcccc
Confidence 123455666666766554 222210 0011110 000011112233345688999
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 397 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~ 397 (439)
|||+|+|||||+|+|+.|||+|+||+||..|+++|.... .+ ...+|+.|++.|++++..++..++.+.++++..+
T Consensus 279 grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---~~--~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 353 (391)
T PRK07588 279 GRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---GD--HRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKT 353 (391)
T ss_pred CCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---CC--HHHHHHHHHHHHHHHHHHHHhhcccccccccCCC
Confidence 999999999999999999999999999999999997632 22 3789999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhccChhHHHHHHHHHhcCC-CCC
Q 013625 398 GPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLP 432 (439)
Q Consensus 398 ~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~-~~p 432 (439)
++...+|+..++.+. .|.+++.+++...+++ .+|
T Consensus 354 ~~~~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 388 (391)
T PRK07588 354 RFGLYVRNIAMKIMN-LPPVADFVGAGSFRDDFELP 388 (391)
T ss_pred HHHHHHHHHHHHHhc-cchhhhhhhhccccCCCCCC
Confidence 999999999999998 8999999999887776 444
No 22
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=334.88 Aligned_cols=351 Identities=19% Similarity=0.229 Sum_probs=265.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||.+.+ ...++++.|+|+++++|+++|+++++.+.+. ++....+++..+. ..+....
T Consensus 23 ~~G~~v~viEr~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~~~~~~--~~~~~~~- 88 (493)
T PRK08244 23 LAGVKTCVIERLKET----------VPYSKALTLHPRTLEILDMRGLLERFLEKGR-KLPSGHFAGLDTR--LDFSALD- 88 (493)
T ss_pred HCCCcEEEEecCCCC----------CCCcceeEecHHHHHHHHhcCcHHHHHhhcc-cccceEEeccccc--CCcccCC-
Confidence 469999999999987 4567899999999999999999999998775 4555555543321 2222111
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC--CC-cEEE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DG-TSLY 160 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg-~~~~ 160 (439)
...++++.++|..|+++|.+.+.+.+ ++|+++++|++++. ++++++++++ +| .+++
T Consensus 89 ~~~~~~~~i~q~~le~~L~~~~~~~g-v~v~~~~~v~~i~~--------------------~~~~v~v~~~~~~g~~~i~ 147 (493)
T PRK08244 89 TSSNYTLFLPQAETEKVLEEHARSLG-VEIFRGAEVLAVRQ--------------------DGDGVEVVVRGPDGLRTLT 147 (493)
T ss_pred CCCCcEEEecHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE--------------------cCCeEEEEEEeCCccEEEE
Confidence 12345678999999999999998886 99999999999987 3456666664 56 4899
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccCh-hH
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDA-SD 238 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~ 238 (439)
||+||||||.+|.||+.+++...+..+...++.+.+....+. ...+..+.++++++++|++++..++++..+.... ..
T Consensus 148 a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~ 227 (493)
T PRK08244 148 SSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPK 227 (493)
T ss_pred eCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccC
Confidence 999999999999999999988777777667777666554333 3455567788999999999888777665433211 11
Q ss_pred hhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccC
Q 013625 239 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 318 (439)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (439)
....+.+++.+.+...+...+. . ....+...|++..+.+++|.+|
T Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~------------------------------~-----~~~~~~~~~~~~~~~a~~~~~g 272 (493)
T PRK08244 228 DEPVTLEELKTSLIRICGTDFG------------------------------L-----NDPVWMSRFGNATRQAERYRSG 272 (493)
T ss_pred CCCCCHHHHHHHHHHhhCCCCC------------------------------c-----CCeeEEEecccceeeHhhhccC
Confidence 1234566777666653320000 0 0011223466666778999999
Q ss_pred CEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCC
Q 013625 319 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 398 (439)
Q Consensus 319 rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~ 398 (439)
||+|+|||||.++|++|||+|+||+||..|+++|...++.. ....+|+.|+++|+++...++..++.+..++... +
T Consensus 273 Rv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~~-~ 348 (493)
T PRK08244 273 RIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW---APDWLLDSYHAERHPVGTALLRNTEVQTKLFDFT-R 348 (493)
T ss_pred cEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC---CCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcCC-c
Confidence 99999999999999999999999999999999999987532 2368999999999999999999999888888654 7
Q ss_pred hHHHHHHHHHHhhccChhHHHHHHHHHhcCC
Q 013625 399 PLNILRAAAFHGAQYISPLKRNIISYASGEQ 429 (439)
Q Consensus 399 ~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~ 429 (439)
....+|+.+..++ ..+.+++.+...++|+.
T Consensus 349 ~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~ 378 (493)
T PRK08244 349 PGLALRSMLSDLL-GFPEVNRYLAGQISALD 378 (493)
T ss_pred hhHHHHHHHHHHh-cchHHHHHHHHHHhcCC
Confidence 7788898765544 57899999999998886
No 23
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-40 Score=329.04 Aligned_cols=346 Identities=23% Similarity=0.261 Sum_probs=264.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||.+.+. ...+++.+++++++++|+++|+++++.+.+. ...... +. ...++....
T Consensus 24 ~~G~~v~vlEr~~~~~---------~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~-~~~~~~-~~-----~~~~~~~~~ 87 (488)
T PRK06834 24 LAGVDVAIVERRPNQE---------LVGSRAGGLHARTLEVLDQRGIADRFLAQGQ-VAQVTG-FA-----ATRLDISDF 87 (488)
T ss_pred HCCCcEEEEecCCCCC---------CCCcceeeECHHHHHHHHHcCcHHHHHhcCC-ccccce-ee-----eEecccccC
Confidence 4699999999998762 2356789999999999999999999987654 221111 11 111221121
Q ss_pred C-CccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEec
Q 013625 84 N-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK 162 (439)
Q Consensus 84 ~-~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ad 162 (439)
. ..++++.+.|..|+++|.+.+++.+ ++|+++++|++++. +++.+.+++.+|.++++|
T Consensus 88 ~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~v~~--------------------~~~~v~v~~~~g~~i~a~ 146 (488)
T PRK06834 88 PTRHNYGLALWQNHIERILAEWVGELG-VPIYRGREVTGFAQ--------------------DDTGVDVELSDGRTLRAQ 146 (488)
T ss_pred CCCCCccccccHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------cCCeEEEEECCCCEEEeC
Confidence 1 2345688999999999999999886 99999999999987 456788888889899999
Q ss_pred EEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCCceeEEEEecCCceEEeecC-CCceEEEEEcCccChhHhhC
Q 013625 163 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIG-DNFSNIVWTMNPKDASDCKS 241 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~~~~~~~~~ 241 (439)
+||+|||.+|.||+.+|+...+..+...++.+.+..+.... ....+.+.+.+.+.|.. ++..+++|..+... ....
T Consensus 147 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 223 (488)
T PRK06834 147 YLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE-WGVHRDALGIHAFGRLEDEGPVRVMVTEKQVG--ATGE 223 (488)
T ss_pred EEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC-cceeeCCCceEEEeccCCCCeEEEEEecCCCC--CCCC
Confidence 99999999999999999998888887777877776553221 11223456677777876 56667777654322 1224
Q ss_pred CCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEE
Q 013625 242 MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 321 (439)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvv 321 (439)
.+.+++.+.+...+...++. ....+...|++..+.+++|.+|||+
T Consensus 224 ~~~~~~~~~l~~~~g~~~~~-----------------------------------~~~~~~~~~~~~~r~a~~~~~gRV~ 268 (488)
T PRK06834 224 PTLDDLREALIAVYGTDYGI-----------------------------------HSPTWISRFTDMARQAASYRDGRVL 268 (488)
T ss_pred CCHHHHHHHHHHhhCCCCcc-----------------------------------ccceeEEeccccceecccccCCcEE
Confidence 56677777777654311110 0111234577777789999999999
Q ss_pred EEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCChHH
Q 013625 322 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLN 401 (439)
Q Consensus 322 LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (439)
|+|||||.++|++|||+|+||+||.+|+|+|...++.. ....+|+.|+++|++....++..+..+..++. .++...
T Consensus 269 LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~---~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~-~~~~~~ 344 (488)
T PRK06834 269 LAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGT---SPESLLDTYHAERHPVAARVLRNTMAQVALLR-PDDRTE 344 (488)
T ss_pred EEeeccccCCccccccccccHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHH
Confidence 99999999999999999999999999999999988643 24789999999999999999999998887776 678889
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHhcCC
Q 013625 402 ILRAAAFHGAQYISPLKRNIISYASGEQ 429 (439)
Q Consensus 402 ~~r~~~~~~~~~~~~l~~~~~~~~~g~~ 429 (439)
.+|+.++.++...+. ++.++..++|+.
T Consensus 345 ~lR~~~~~~~~~~~~-~~~~~~~~~g~~ 371 (488)
T PRK06834 345 ALRDIVAELLGMDEP-RKRIAAMMSGLD 371 (488)
T ss_pred HHHHHHHHHhcCcHH-HHHHHHHHhcCC
Confidence 999999998877555 999999999985
No 24
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-40 Score=320.42 Aligned_cols=333 Identities=17% Similarity=0.209 Sum_probs=245.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
++|++|+|+||++.++ ..++++.|+|+++++|+.+|+++.+...+. +...+.+++.+|.....++.
T Consensus 21 ~~g~~v~v~E~~~~~~----------~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~--- 86 (373)
T PRK06753 21 EQGHEVKVFEKNESVK----------EVGAGIGIGDNVIKKLGNHDLAKGIKNAGQ-ILSTMNLLDDKGTLLNKVKL--- 86 (373)
T ss_pred hCCCcEEEEecCCccc----------ccccceeeChHHHHHHHhcChHHHHHhcCC-cccceeEEcCCCCEEeeccc---
Confidence 5799999999999884 335599999999999999999999988766 67888899887764433322
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
.....++.++|..|+++|.+.+. ..+|+++++|++++. +++.++|+++||+++.+|+
T Consensus 87 ~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~~~~ 143 (373)
T PRK06753 87 KSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIEN--------------------ETDKVTIHFADGESEAFDL 143 (373)
T ss_pred ccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEe--------------------cCCcEEEEECCCCEEecCE
Confidence 22345688999999999999986 368999999999987 4577999999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeec-C-CceeEEEEecCCceEEeecCCCceEEEEEcCccCh-hHhh
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-E-NYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDA-SDCK 240 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~~~ 240 (439)
||||||.+|.||+.+++.......+..++.+.++... + .......+..+++++++|+.++...+++.+..... ....
T Consensus 144 vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T PRK06753 144 CIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYS 223 (373)
T ss_pred EEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccc
Confidence 9999999999999998765544455566666554322 1 23344556678889999998877666655543221 1111
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccc-ccccccccCC
Q 013625 241 SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSL-KHANNYVSKR 319 (439)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r 319 (439)
..+.+ .+.+.+. +|.+. ++.++.... ......+++.. ..+++|..||
T Consensus 224 ~~~~~----~l~~~~~-~~~~~-----------~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~r 271 (373)
T PRK06753 224 SFGKP----HLQAYFN-HYPNE-----------VREILDKQS----------------ETGILHHDIYDLKPLKSFVYGR 271 (373)
T ss_pred cccHH----HHHHHHh-cCChH-----------HHHHHHhCC----------------cccceeeccccccccccccCCC
Confidence 12222 2333332 23221 111111000 00011222222 2357899999
Q ss_pred EEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCCh
Q 013625 320 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 399 (439)
Q Consensus 320 vvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~ 399 (439)
|+|||||||+|+|+.|||+|+||+||..|+++|... + ..++|+.|++.|++++..++..++.+..+++...++
T Consensus 272 v~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-----~--~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~ 344 (373)
T PRK06753 272 IVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-----D--FEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESKL 344 (373)
T ss_pred EEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-----c--HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCch
Confidence 999999999999999999999999999999999642 3 378999999999999999999999999999999899
Q ss_pred HHHHHHHHHHhhc
Q 013625 400 LNILRAAAFHGAQ 412 (439)
Q Consensus 400 ~~~~r~~~~~~~~ 412 (439)
...+|+.+++.+.
T Consensus 345 ~~~~r~~~l~~~~ 357 (373)
T PRK06753 345 LVALRNRVMKRMP 357 (373)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998873
No 25
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=6.2e-39 Score=316.14 Aligned_cols=357 Identities=14% Similarity=0.071 Sum_probs=248.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
++|++|+|+||++.+. .....++..|+|+++++|+++|+++++.+.+. +...+.+++.+. ...++....
T Consensus 23 ~~G~~v~v~E~~~~~~--------~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~~~g~--~~~~~~~~~ 91 (392)
T PRK08243 23 LAGIDSVVLERRSREY--------VEGRIRAGVLEQGTVDLLREAGVGERMDREGL-VHDGIELRFDGR--RHRIDLTEL 91 (392)
T ss_pred hcCCCEEEEEcCCccc--------cccccceeEECHhHHHHHHHcCChHHHHhcCC-ccCcEEEEECCE--EEEeccccc
Confidence 5799999999999641 12345677899999999999999999998776 667777776432 233333222
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe-CCCc--EEE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLY 160 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~--~~~ 160 (439)
......+.++|..|.+.|++.+.+.+ ++++++++|++++. .++..+.|++ .+|+ +++
T Consensus 92 ~~~~~~~~~~~~~l~~~Ll~~a~~~g-v~v~~~~~v~~i~~-------------------~~~~~~~V~~~~~G~~~~i~ 151 (392)
T PRK08243 92 TGGRAVTVYGQTEVTRDLMAARLAAG-GPIRFEASDVALHD-------------------FDSDRPYVTYEKDGEEHRLD 151 (392)
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCC-CeEEEeeeEEEEEe-------------------cCCCceEEEEEcCCeEEEEE
Confidence 22333456789999999999988776 99999999999964 0234566777 4674 799
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCC--eEEEEEEE-eecCCceeEEEEecCCceEEeecCCCceEEEEEcCccChh
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQ--NAIICTVE-HNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDAS 237 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 237 (439)
||+||||||.+|.||+.++.......... ..+.+.+. .............+.+..++.+.+++...+++.+....
T Consensus 152 ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 229 (392)
T PRK08243 152 CDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDD-- 229 (392)
T ss_pred eCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCC--
Confidence 99999999999999999976432111111 12222221 11111222222223344444444455555555554322
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccccccc
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (439)
....++.+.+.+.+...+....... + +.........+|+....+++|.+
T Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~---~~~~~~~~~~~~~~~~~~~~~~~ 278 (392)
T PRK08243 230 KVEDWSDERFWDELRRRLPPEDAER----------------------------L---VTGPSIEKSIAPLRSFVAEPMQY 278 (392)
T ss_pred CcccCChhHHHHHHHHhcCcccccc----------------------------c---ccCccccccceeeeeceecccee
Confidence 1223455666677766543100000 0 00000111235666666789999
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcC--
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV-- 395 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~-- 395 (439)
|||+|||||||.|+|++|||+|+||+||..|+++|...++.+ ...+|+.|+++|++++..++..+..+.++++.
T Consensus 279 grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~ 354 (392)
T PRK08243 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG----DTALLDAYSATALRRVWKAERFSWWMTSMLHRFP 354 (392)
T ss_pred CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999876532 27899999999999999999999999999876
Q ss_pred -CCChHHHHHHHHHHhhccChhHHHHHHHHHhcC
Q 013625 396 -DFGPLNILRAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 396 -~~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
...+...+|+..|+.+...|.+++.+...++|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK08243 355 DDDPFDQRIQLAELDYLTSSRAAATTLAENYVGL 388 (392)
T ss_pred CCChHHHHHHHHHHHHHhcCHHHHHHHHHhccCC
Confidence 455777899999999999999999999999998
No 26
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=4.8e-39 Score=316.86 Aligned_cols=345 Identities=19% Similarity=0.297 Sum_probs=238.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+||.+.++ ..++++.|+|+++++|+++|+++.+.+.+......+.++. ++.....++....
T Consensus 26 ~~G~~v~v~E~~~~~~----------~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 94 (388)
T PRK07045 26 ARGHSVTVVERAARNR----------AQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYH-DKELIASLDYRSA 94 (388)
T ss_pred hcCCcEEEEeCCCccc----------CCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEec-CCcEEEEecCCcc
Confidence 5799999999999873 3345778999999999999999999886653445555554 3444444432221
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
....+.+.++|..|+++|.+.+.+.++++++++++|++++. ++ ++..+.|++++|+++.+|+
T Consensus 95 ~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~---------~~---------~~~~~~v~~~~g~~~~~~~ 156 (388)
T PRK07045 95 SALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIER---------DA---------DGTVTSVTLSDGERVAPTV 156 (388)
T ss_pred ccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE---------CC---------CCcEEEEEeCCCCEEECCE
Confidence 11222356899999999999998766799999999999987 11 1234578899999999999
Q ss_pred EEEecCCCchhhhhh-CCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEec-CCceEEeecCCCceEEEEEcCccChhHhh
Q 013625 164 VVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP-AGPIALLPIGDNFSNIVWTMNPKDASDCK 240 (439)
Q Consensus 164 vVgADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 240 (439)
||||||.+|.||+.+ +.......+....+.+.+...... .....++.+ +++++++|++++..+++|..+.+......
T Consensus 157 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 236 (388)
T PRK07045 157 LVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYL 236 (388)
T ss_pred EEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhcc
Confidence 999999999999974 544433334333344444433222 222233333 45577899988877787776554332211
Q ss_pred -CCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccCC
Q 013625 241 -SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKR 319 (439)
Q Consensus 241 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 319 (439)
....+.+.+.+...+. +... +.+.. + ........+++....+++|+.||
T Consensus 237 ~~~~~~~~~~~~~~~~~----~~~~-------~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~gr 286 (388)
T PRK07045 237 ADTTRTKLLARLNEFVG----DESA-------DAMAA------------------I-GAGTAFPLIPLGRMNLDRYHKRN 286 (388)
T ss_pred CCCCHHHHHHHHhhhcC----ccch-------HHHhc------------------c-CcccccceeecCccccccccCCC
Confidence 1233444444433211 1000 00000 0 00011112456666678999999
Q ss_pred EEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCCh
Q 013625 320 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 399 (439)
Q Consensus 320 vvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~ 399 (439)
|+|+|||||+|+|++|||+|+||+||..||++|...+.... ..+.+|+.|+++|+++...++..++.+.+.++...++
T Consensus 287 v~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~--~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~ 364 (388)
T PRK07045 287 VVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQI--ALADALERFERIRRPVNEAVISYGHALATTYHDRAAL 364 (388)
T ss_pred EEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhH
Confidence 99999999999999999999999999999999998754332 2478999999999999999999999999999988787
Q ss_pred HHHHHHHHHH
Q 013625 400 LNILRAAAFH 409 (439)
Q Consensus 400 ~~~~r~~~~~ 409 (439)
....|.+...
T Consensus 365 ~~~~~~~~~~ 374 (388)
T PRK07045 365 VANFRSQLQT 374 (388)
T ss_pred HHHHHhhhhc
Confidence 7777666543
No 27
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=3.9e-39 Score=318.42 Aligned_cols=335 Identities=16% Similarity=0.154 Sum_probs=229.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcc-eeEEeccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLG-YTKYNARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 82 (439)
.+|++|+|+||.+.+ ...++++.|+|+++++|+++|+++++.+.+. ....+.++++.... ........
T Consensus 23 ~~G~~V~i~E~~~~~----------~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~-~~~~~~~~~g~~~~~~~~~~~~~ 91 (400)
T PRK06475 23 ARGWAVTIIEKAQEL----------SEVGAGLQLAPNAMRHLERLGVADRLSGTGV-TPKALYLMDGRKARPLLAMQLGD 91 (400)
T ss_pred hCCCcEEEEecCCcc----------CcCCccceeChhHHHHHHHCCChHHHhhccc-CcceEEEecCCCcceEEEecchh
Confidence 469999999999877 3456699999999999999999999988776 34556566543221 11111111
Q ss_pred CC--C-ccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCC
Q 013625 83 VN--K-EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDG 156 (439)
Q Consensus 83 ~~--~-~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg 156 (439)
.. . ....+.++|..|+++|++.+.+.++++|+++++|++++. .++++++++ .++
T Consensus 92 ~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~--------------------~~~~v~v~~~~~~~~ 151 (400)
T PRK06475 92 LARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ--------------------TGNSITATIIRTNSV 151 (400)
T ss_pred hhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec--------------------CCCceEEEEEeCCCC
Confidence 11 1 111246899999999999998765699999999999976 345677776 344
Q ss_pred cEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecC----------CceeEEEEecCCceEEeecCCCceE
Q 013625 157 TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE----------NYCAWQRFLPAGPIALLPIGDNFSN 226 (439)
Q Consensus 157 ~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~g~~~~~p~~~~~~~ 226 (439)
++++||+||||||.+|.||+.++. ......+..++++.++.+.. ......++.+++.++.+|+.++...
T Consensus 152 ~~~~adlvIgADG~~S~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~ 230 (400)
T PRK06475 152 ETVSAAYLIACDGVWSMLRAKAGF-SKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFF 230 (400)
T ss_pred cEEecCEEEECCCccHhHHhhcCC-CCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEE
Confidence 689999999999999999999965 22333456677776654321 1223455678889999999876443
Q ss_pred EEEEcCccC-hh-HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeeccccee
Q 013625 227 IVWTMNPKD-AS-DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMV 304 (439)
Q Consensus 227 ~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (439)
.++...... .. .+..... .+.+...+. +|.+... . +.+.......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~-~~~~~~~-----------~------------------~i~~~~~~~~ 277 (400)
T PRK06475 231 NFVAITGGENPGEVWSKTGD---KAHLKSIYA-DWNKPVL-----------Q------------------ILAAIDEWTY 277 (400)
T ss_pred EEEEEEcCCCCcccCCCCCC---HHHHHHHhc-CCChHHH-----------H------------------HHhcCCceeE
Confidence 333322211 11 1111111 123333332 4433211 0 1112223335
Q ss_pred eeccccccccc-ccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHH
Q 013625 305 FPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 383 (439)
Q Consensus 305 ~~~~~~~~~~~-~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~ 383 (439)
||+......+| .+|||+|||||||+|+|+.|||+|+||+||..|+++|.. .++ ..+|+.|++.|++++..++
T Consensus 278 ~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~-----~~~--~~aL~~Ye~~R~~r~~~~~ 350 (400)
T PRK06475 278 WPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS-----DDQ--SAGLKRFDSVRKERIAAVA 350 (400)
T ss_pred CcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc-----CCH--HHHHHHHHHHHHHHHHHHH
Confidence 77776655555 579999999999999999999999999999999999963 133 6899999999999999999
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHhh
Q 013625 384 AVLDGFQKAYSVDFGPLNILRAAAFHGA 411 (439)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 411 (439)
..++... .+....++....|+..+...
T Consensus 351 ~~s~~~~-~~~~~~~~~~~~r~~~~~~~ 377 (400)
T PRK06475 351 KRGQLNR-FAYHATGIFALGRNMLFAIR 377 (400)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHhhc
Confidence 9987444 44445577788898888665
No 28
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=8.2e-38 Score=320.53 Aligned_cols=347 Identities=18% Similarity=0.245 Sum_probs=251.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
..|++|+||||++.. ...++++.++++++++|+++|+++++.+.+. +.....++..+ .....++....
T Consensus 44 ~~G~~v~viE~~~~~----------~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 111 (547)
T PRK08132 44 QQGVPVVLLDDDDTL----------STGSRAICFAKRSLEIFDRLGCGERMVDKGV-SWNVGKVFLRD-EEVYRFDLLPE 111 (547)
T ss_pred hCCCcEEEEeCCCCC----------CCCCeEEEEcHHHHHHHHHcCCcHHHHhhCc-eeeceeEEeCC-CeEEEecCCCC
Confidence 469999999999876 4567899999999999999999999988776 33333344433 23334332111
Q ss_pred --CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe--CCCc-E
Q 013625 84 --NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT-S 158 (439)
Q Consensus 84 --~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~-~ 158 (439)
...+..+.++|..|+++|.+.+.+.++++|+++++|++++. +++++++.+ .+|+ +
T Consensus 112 ~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~--------------------~~~~v~v~~~~~~g~~~ 171 (547)
T PRK08132 112 PGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ--------------------HDDGVTLTVETPDGPYT 171 (547)
T ss_pred CCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--------------------cCCEEEEEEECCCCcEE
Confidence 11222356899999999999999886799999999999987 345566655 4554 7
Q ss_pred EEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-ceeEEEEe----cCCceEEeecCCCceEEEEEcCc
Q 013625 159 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFL----PAGPIALLPIGDNFSNIVWTMNP 233 (439)
Q Consensus 159 ~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~g~~~~~p~~~~~~~~~~~~~~ 233 (439)
+++|+||||||.+|.||+.+++...+..+...++...+....+. ...+.++. ++..+++.+.+++..++.+....
T Consensus 172 i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (547)
T PRK08132 172 LEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGW 251 (547)
T ss_pred EEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCC
Confidence 99999999999999999999998877776666666555443222 22333332 23344555666565554443322
Q ss_pred cChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccc
Q 013625 234 KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHAN 313 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (439)
.... ....+.+.+.+.+...+. .. .+ . ...+...|++..+.++
T Consensus 252 ~~~~-~~~~~~~~~~~~l~~~~~----~~----------------------------~~--~--~~~~~~~~~~~~~~a~ 294 (547)
T PRK08132 252 DADP-EAEKKPENVIPRVRALLG----ED----------------------------VP--F--ELEWVSVYTFQCRRMD 294 (547)
T ss_pred CCCc-hhhcCHHHHHHHHHHHcC----CC----------------------------CC--e--eEEEEEeeeeeeeeec
Confidence 1111 112344555555555332 00 00 0 0112335677777789
Q ss_pred ccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhh
Q 013625 314 NYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAY 393 (439)
Q Consensus 314 ~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~ 393 (439)
+|.+|||+|+|||||.|+|++|||+|+||+||..|+++|...++.. ....+|+.|+++|+++++.++..+..+..++
T Consensus 295 ~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~---~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~ 371 (547)
T PRK08132 295 RFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR---APDSLLDSYASEREFAADENIRNSTRSTDFI 371 (547)
T ss_pred ccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999887643 2478999999999999999999999999998
Q ss_pred cCCCChHHHHHHHHHHhhccChhHHHHHH
Q 013625 394 SVDFGPLNILRAAAFHGAQYISPLKRNII 422 (439)
Q Consensus 394 ~~~~~~~~~~r~~~~~~~~~~~~l~~~~~ 422 (439)
...++....+|+..+..+...+.+++.+.
T Consensus 372 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 400 (547)
T PRK08132 372 TPKSPVSRLFRDAVLRLARDHPFARRLVN 400 (547)
T ss_pred CCCCHHHHHHHHHHHhhhcccHHHHHHHh
Confidence 88888888999999999988888876664
No 29
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-38 Score=317.78 Aligned_cols=317 Identities=22% Similarity=0.316 Sum_probs=232.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC-
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD- 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (439)
..|++|+||||.+.+ ...+++++|+|+++++|+++|+++++.+.+. +...+.+|+.++... ......
T Consensus 24 ~~Gi~v~viE~~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 91 (502)
T PRK06184 24 RRGVSFRLIEKAPEP----------FPGSRGKGIQPRTQEVFDDLGVLDRVVAAGG-LYPPMRIYRDDGSVA-ESDMFAH 91 (502)
T ss_pred HCCCcEEEEeCCCCC----------CcCccceeecHHHHHHHHHcCcHHHHHhcCc-cccceeEEeCCceEE-Eeecccc
Confidence 469999999999987 4566799999999999999999999998776 555666776554322 211110
Q ss_pred -----CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---C
Q 013625 83 -----VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---S 154 (439)
Q Consensus 83 -----~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~ 154 (439)
....+.++.++|..|+++|.+.+.+.+ ++|+++++|++++. +++.+++++ .
T Consensus 92 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~i~~--------------------~~~~v~v~~~~~~ 150 (502)
T PRK06184 92 LEPTPDEPYPLPLMVPQWRTERILRERLAELG-HRVEFGCELVGFEQ--------------------DADGVTARVAGPA 150 (502)
T ss_pred ccCCCCCCCCcceecCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEE--------------------cCCcEEEEEEeCC
Confidence 011234578999999999999999886 99999999999987 445677777 5
Q ss_pred CCcEEEecEEEEecCCCchhhhhhCCCCCCCcCCC-eEEEEEEEeecCCceeEEEEe-cC-CceEEeecCCC-ceEEEEE
Q 013625 155 DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKENYCAWQRFL-PA-GPIALLPIGDN-FSNIVWT 230 (439)
Q Consensus 155 dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~p~~~~-~~~~~~~ 230 (439)
++++++||+||||||.+|.||+.+++...+..+.. .++.+.+.........+..+. +. +.+.++|+.++ ...+++.
T Consensus 151 ~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 230 (502)
T PRK06184 151 GEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAP 230 (502)
T ss_pred CeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEE
Confidence 66799999999999999999999999888776655 556565554432323333333 33 67778898764 3344443
Q ss_pred cCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccc
Q 013625 231 MNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK 310 (439)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (439)
.... .....+.+.+.+.+...+. +.+ + ......+...|++..+
T Consensus 231 ~~~~---~~~~~~~~~~~~~l~~~~~--~~~-----------------------------~---~~~~~~~~~~~~~~~~ 273 (502)
T PRK06184 231 LPPG---GEPDLSADGLTALLAERTG--RTD-----------------------------I---RLHSVTWASAFRMNAR 273 (502)
T ss_pred cCCC---ccCCCCHHHHHHHHHHhcC--CCC-----------------------------c---ceeeeeeeecccccee
Confidence 3221 1123455666665555322 000 0 0111223345666777
Q ss_pred cccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013625 311 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 390 (439)
Q Consensus 311 ~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~ 390 (439)
.+++|.+|||+|+|||||.|+|++|||+|+||+||..|+++|...++. . .+.+|+.|+++|++++..++..+..+.
T Consensus 274 ~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--~--~~~lL~~Ye~eR~p~~~~~~~~s~~~~ 349 (502)
T PRK06184 274 LADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG--A--PEALLDTYEEERRPVAAAVLGLSTELL 349 (502)
T ss_pred EhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999988764 2 378999999999999999999998887
Q ss_pred Hhhc
Q 013625 391 KAYS 394 (439)
Q Consensus 391 ~~~~ 394 (439)
..+.
T Consensus 350 ~~~~ 353 (502)
T PRK06184 350 DAIK 353 (502)
T ss_pred HHHh
Confidence 7753
No 30
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=3.7e-38 Score=307.69 Aligned_cols=337 Identities=16% Similarity=0.151 Sum_probs=231.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC-
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD- 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (439)
.+|++|+||||++.++ ..+.++.+.++++++|+++|+++++.+.+. ++..+.+++.++..........
T Consensus 22 ~~G~~v~viE~~~~~~----------~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 90 (372)
T PRK05868 22 RHGYSVTMVERHPGLR----------PGGQAIDVRGPALDVLERMGLLAAAQEHKT-RIRGASFVDRDGNELFRDTESTP 90 (372)
T ss_pred hCCCCEEEEcCCCCCC----------CCceeeeeCchHHHHHHhcCCHHHHHhhcc-CccceEEEeCCCCEEeecccccc
Confidence 4699999999999874 334589999999999999999999987665 6778888887775443321111
Q ss_pred C--CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEE
Q 013625 83 V--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 160 (439)
Q Consensus 83 ~--~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ 160 (439)
. ......+.++|.+|.+.|.+.+. .+++++++++|++++. +++.++|+++||++++
T Consensus 91 ~~~~~~~~~~~i~R~~L~~~l~~~~~--~~v~i~~~~~v~~i~~--------------------~~~~v~v~~~dg~~~~ 148 (372)
T PRK05868 91 TGGPVNSPDIELLRDDLVELLYGATQ--PSVEYLFDDSISTLQD--------------------DGDSVRVTFERAAARE 148 (372)
T ss_pred cCCCCCCceEEEEHHHHHHHHHHhcc--CCcEEEeCCEEEEEEe--------------------cCCeEEEEECCCCeEE
Confidence 0 11122367999999999887654 3499999999999976 4577999999999999
Q ss_pred ecEEEEecCCCchhhhhhCCCCCC--CcCCCeEEEEEEEeecCCceeEEE-EecCCceEEeecCCC-ceEEEEEcCccCh
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTG--WSYSQNAIICTVEHNKENYCAWQR-FLPAGPIALLPIGDN-FSNIVWTMNPKDA 236 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~p~~~~-~~~~~~~~~~~~~ 236 (439)
||+||||||++|.||+.+...... ..++.....+.++...+......+ +.++..+.++|..++ ....++.+.....
T Consensus 149 adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (372)
T PRK05868 149 FDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTEL 228 (372)
T ss_pred eCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCc
Confidence 999999999999999998543322 122333333333322222223333 345556677888764 3333343322211
Q ss_pred hHhhCCCHHHHHHHHHHhccC-CCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeee-cccccccc
Q 013625 237 SDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP-LSLKHANN 314 (439)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 314 (439)
. ......+...+.+.+.|.. +|... ++.+.+ .. .....|+ +....+++
T Consensus 229 ~-~~~~~~~~~~~~l~~~f~~~~w~~~---------~l~~~~-------------------~~-~~~~~~~~~~~~~~~~ 278 (372)
T PRK05868 229 R-IDYRDTEAQFAELQRRMAEDGWVRA---------QLLHYM-------------------RS-APDFYFDEMSQILMDR 278 (372)
T ss_pred c-cccCChHHHHHHHHHHHhhCCCchH---------HHHhhc-------------------cc-CCceeeccceEEecCC
Confidence 1 1112234455666665531 33210 011100 00 0011233 44445789
Q ss_pred cccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 013625 315 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 394 (439)
Q Consensus 315 ~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~ 394 (439)
|++|||+|||||||+|+|+.|||+|+||+||+.||++|... ..++ .++|+.||+.++|++.+.+.........+.
T Consensus 279 w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---~~~~--~~al~~ye~~~~~~~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 279 WSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---GDDY--QLGFANYHAEFHGFVERNQWLVSDNIPGGA 353 (372)
T ss_pred CCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---CCCH--HHHHHHHHHHHhHHHHHhhhhhhccCCccc
Confidence 99999999999999999999999999999999999999763 2244 889999999999999999999888888888
Q ss_pred CCCChHHHHHHHHH
Q 013625 395 VDFGPLNILRAAAF 408 (439)
Q Consensus 395 ~~~~~~~~~r~~~~ 408 (439)
..+.+..++|+..+
T Consensus 354 p~~~~~~~~~~~~~ 367 (372)
T PRK05868 354 PIPQEEFERIVHSI 367 (372)
T ss_pred CCCHHHHHHhhccc
Confidence 88888777776554
No 31
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=2.1e-37 Score=319.36 Aligned_cols=328 Identities=19% Similarity=0.269 Sum_probs=235.7
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcc---eeE---E
Q 013625 5 KHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLG---YTK---Y 78 (439)
Q Consensus 5 ~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~---~~~---~ 78 (439)
+|++|+||||++.+ ...+++.+|+|+++++|+++|+++++.+.+. .+..+.+|+.++.. ... +
T Consensus 55 ~Gi~v~IiE~~~~~----------~~~grA~gl~prtleiL~~lGl~d~l~~~g~-~~~~~~~~~~~~~~~~~i~r~~~~ 123 (634)
T PRK08294 55 PDITTRIVERKPGR----------LELGQADGIACRTMEMFQAFGFAERILKEAY-WINETAFWKPDPADPSTIVRTGRV 123 (634)
T ss_pred CCCcEEEEEcCCCC----------CCCCeeeEEChHHHHHHHhccchHHHHhhcc-cccceEEEcCCCccccceeccccc
Confidence 49999999999876 4556799999999999999999999998777 66677788755321 111 1
Q ss_pred e-ccCCCCccceeeeehHHHHHHHHHHhhcCC-CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC--
Q 013625 79 N-ARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-- 154 (439)
Q Consensus 79 ~-~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~-~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-- 154 (439)
. ..........+.++|..++++|++.+.+.+ .+++++|++|++++.+ ++ .+..|+|+++
T Consensus 124 ~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~---------~~--------~~~~V~v~l~~~ 186 (634)
T PRK08294 124 QDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVD---------EE--------GEYPVTVTLRRT 186 (634)
T ss_pred cccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEEC---------CC--------CCCCEEEEEEEC
Confidence 0 001111122267999999999999998876 3688999999999871 10 1245777775
Q ss_pred ----CC--cEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEee--cCC-ceeEEE-EecCCceEEeecCCCc
Q 013625 155 ----DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN--KEN-YCAWQR-FLPAGPIALLPIGDNF 224 (439)
Q Consensus 155 ----dg--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~g~~~~~p~~~~~ 224 (439)
+| ++++|||||||||++|.||+.+|+...+..+...+....+... .+. ...... ..+++.++++|.+++.
T Consensus 187 ~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~g~ 266 (634)
T PRK08294 187 DGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQSASEGSILLIPREGGY 266 (634)
T ss_pred CCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEecCCCceEEEEECCCCe
Confidence 35 5899999999999999999999998887777666655554332 222 111112 2467889999998873
Q ss_pred -eEEEEEcCc---cChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecc
Q 013625 225 -SNIVWTMNP---KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS 300 (439)
Q Consensus 225 -~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (439)
.++++.... .........+.+++.+.++..+. +... .+ ....
T Consensus 267 ~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~----p~~~-----------------------------~~-~~v~ 312 (634)
T PRK08294 267 LVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILH----PYTL-----------------------------DV-KEVA 312 (634)
T ss_pred EEEEEEecCcCCCccccccccCCHHHHHHHHHHhcC----CCCC-----------------------------ce-eEEe
Confidence 555443321 11112234567777777776442 1100 01 1123
Q ss_pred cceeeeccccccccc----------ccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHH
Q 013625 301 ERMVFPLSLKHANNY----------VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 370 (439)
Q Consensus 301 ~~~~~~~~~~~~~~~----------~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~ 370 (439)
+...|++.++.+++| ..|||+|+|||||.++|.+|||+|+||+||+.|+|+|...++.. ..+.+|+.
T Consensus 313 w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~---a~~~lL~t 389 (634)
T PRK08294 313 WWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR---SPPELLHT 389 (634)
T ss_pred EEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC---CcHHHHHH
Confidence 334566666666665 46999999999999999999999999999999999999988643 34789999
Q ss_pred HHHhhchhhHHHHHHHHHHHHhhcCCC
Q 013625 371 YEAERKPANIVMMAVLDGFQKAYSVDF 397 (439)
Q Consensus 371 Ye~~r~~~~~~~~~~~~~~~~~~~~~~ 397 (439)
|+++|++++..++..++.+.+++....
T Consensus 390 Ye~ERrp~a~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 390 YSAERQAIAQELIDFDREWSTMMAAPP 416 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999997653
No 32
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=303.05 Aligned_cols=342 Identities=19% Similarity=0.198 Sum_probs=245.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
..|++|+|+|+.+.++ ..++++.++|+++++|+++|+.+.+.+.+. +...+.+++.+|.....++....
T Consensus 25 ~~g~~v~v~E~~~~~~----------~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 93 (375)
T PRK06847 25 RAGIAVDLVEIDPEWR----------VYGAGITLQGNALRALRELGVLDECLEAGF-GFDGVDLFDPDGTLLAELPTPRL 93 (375)
T ss_pred hCCCCEEEEecCCCCc----------cCCceeeecHHHHHHHHHcCCHHHHHHhCC-CccceEEECCCCCEEEecCcccc
Confidence 4699999999998873 345699999999999999999999988776 67788888877765544432111
Q ss_pred C--CccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEe
Q 013625 84 N--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYA 161 (439)
Q Consensus 84 ~--~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~a 161 (439)
. ..+....++|..|.+.|.+.+.+.+ ++|+++++|++++. +++.+.|.+++|+++.+
T Consensus 94 ~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------------------~~~~~~v~~~~g~~~~a 152 (375)
T PRK06847 94 AGDDLPGGGGIMRPALARILADAARAAG-ADVRLGTTVTAIEQ--------------------DDDGVTVTFSDGTTGRY 152 (375)
T ss_pred cccCCCCcccCcHHHHHHHHHHHHHHhC-CEEEeCCEEEEEEE--------------------cCCEEEEEEcCCCEEEc
Confidence 1 1123457999999999999998876 99999999999986 44668899999999999
Q ss_pred cEEEEecCCCchhhhhh-CCCCCCCcCCCeEEEEEEEeecCCceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhh
Q 013625 162 KLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCK 240 (439)
Q Consensus 162 dlvVgADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~ 240 (439)
|+||+|||.+|.+|+.+ +........+...+.+.++..........++.+++.+.++|..++...+++..+.+.. .
T Consensus 153 d~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~ 229 (375)
T PRK06847 153 DLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDN---P 229 (375)
T ss_pred CEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCCCCeEEEEEeccCccc---c
Confidence 99999999999999998 3333344445555555555433222334445567788888988765544444332221 1
Q ss_pred CCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccc-ccccccCC
Q 013625 241 SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKH-ANNYVSKR 319 (439)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r 319 (439)
..+.+.+.+.+.+.+. .|.+... ..+.+. + ........+|+.... ..+|..||
T Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~gr 283 (375)
T PRK06847 230 RIEPDTLAALLRELLA-PFGGPVL------QELREQ------------------I-TDDAQVVYRPLETLLVPAPWHRGR 283 (375)
T ss_pred cCChHHHHHHHHHHHh-hcCchHH------HHHHHh------------------c-CCccceeeccHhhccCCCCccCCe
Confidence 2344555555655443 3332100 001000 0 000111123444433 46799999
Q ss_pred EEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCC-
Q 013625 320 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG- 398 (439)
Q Consensus 320 vvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~- 398 (439)
|+|+|||||+|+|+.|||+|+||+||..|+++|... .+ ..++|+.|+++|++++..++..++.++.++....+
T Consensus 284 v~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----~~--~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~~ 357 (375)
T PRK06847 284 VVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----DS--LEAALQAYYARRWERCRMVVEASARIGRIEIEGGDK 357 (375)
T ss_pred EEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----Cc--HHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCCCc
Confidence 999999999999999999999999999999999762 23 37899999999999999999999999999876655
Q ss_pred --hHHHHHHHHHHhhc
Q 013625 399 --PLNILRAAAFHGAQ 412 (439)
Q Consensus 399 --~~~~~r~~~~~~~~ 412 (439)
....+|++++.++.
T Consensus 358 ~~~~~~~~~~~~~~~~ 373 (375)
T PRK06847 358 AEHAGLMRESMELLAQ 373 (375)
T ss_pred cchHHHHHHHHHHhcC
Confidence 66678888887764
No 33
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=304.98 Aligned_cols=342 Identities=17% Similarity=0.181 Sum_probs=246.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEe-ccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYN-ARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (439)
.+|++|+||||.+.+ ...+++.+++|+++++|+.+|+++++.+.+. ++....+|+.......... ...
T Consensus 26 r~Gi~V~llEr~~~~----------~~~gra~~l~~~tle~L~~lGl~~~l~~~~~-~~~~~~~~~~g~~i~~~~~~~~~ 94 (487)
T PRK07190 26 LCGLNTVIVDKSDGP----------LEVGRADALNARTLQLLELVDLFDELYPLGK-PCNTSSVWANGKFISRQSSWWEE 94 (487)
T ss_pred HcCCCEEEEeCCCcc----------cccccceEeCHHHHHHHHhcChHHHHHhhCc-cceeEEEecCCceEeeccccCcc
Confidence 469999999999987 4467799999999999999999999988765 5555566664322111110 001
Q ss_pred C--CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEE
Q 013625 83 V--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 160 (439)
Q Consensus 83 ~--~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ 160 (439)
. ...++.+.++|..++++|.+.+.+.| ++|+++++|++++. +++++.+.+.+|++++
T Consensus 95 ~~~~~~~~~~~~~q~~le~~L~~~~~~~G-v~v~~~~~v~~l~~--------------------~~~~v~v~~~~g~~v~ 153 (487)
T PRK07190 95 LEGCLHKHFLMLGQSYVEKLLDDKLKEAG-AAVKRNTSVVNIEL--------------------NQAGCLTTLSNGERIQ 153 (487)
T ss_pred CCcCCCCceEecCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------------cCCeeEEEECCCcEEE
Confidence 1 11233467899999999999999886 99999999999987 4466788888888999
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEee--cCC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChh
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN--KEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDAS 237 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 237 (439)
|++||||||.+|.||+.+|+...+......+..+.+..+ .+. ........+.+.++++|.+++..+++....
T Consensus 154 a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~----- 228 (487)
T PRK07190 154 SRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMD----- 228 (487)
T ss_pred eCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcC-----
Confidence 999999999999999999998877665544444433332 222 112222346788889999876555433221
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccc-
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYV- 316 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 316 (439)
....+.+++.+.+...+. +.. + -.....+...|++..+.+++|.
T Consensus 229 -~~~~t~~~~~~~l~~~~~----~~~---------------------------~---~~~~~~w~s~~~~~~r~a~~~r~ 273 (487)
T PRK07190 229 -TKDFTLEQAIAKINHAMQ----PHR---------------------------L---GFKEIVWFSQFSVKESVAEHFFI 273 (487)
T ss_pred -CCCCCHHHHHHHHHHhcC----CCC---------------------------C---ceEEEEEEEEeeeCcEehhhcCc
Confidence 123456666666665332 000 0 0122345557899999999997
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD 396 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~ 396 (439)
+|||+|+|||||.++|++|||+|++|+||.+|+|+|...++.. ....+|+.|+++|++....++..++.+.++...
T Consensus 274 ~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~---a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~~- 349 (487)
T PRK07190 274 QDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG---ASPELLQSYEAERKPVAQGVIETSGELVRSTKY- 349 (487)
T ss_pred CCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-
Confidence 7999999999999999999999999999999999999887643 247899999999999999999999988886643
Q ss_pred CChHHHHHHHHHHhhccChhHHHHHHHHHhcCC
Q 013625 397 FGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 429 (439)
Q Consensus 397 ~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~ 429 (439)
.+....+|+.+ . ..+.+...++|+.
T Consensus 350 ~~~~~~~~~~~-~-------~~~~~~~~~~g~~ 374 (487)
T PRK07190 350 SANGTHAQDYV-K-------IVEKRAGYITGMG 374 (487)
T ss_pred ccCCcCHHHHH-H-------HHHHhhhhhcccc
Confidence 23333344422 2 3344555566664
No 34
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=2.3e-37 Score=305.98 Aligned_cols=338 Identities=16% Similarity=0.202 Sum_probs=237.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeC-CCcceeEEeccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDY-TGLGYTKYNARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (439)
.+|++|+|+||.+.++ ..++++.|+|+++++|+++|+++.+.+.+. ....+.+++. ++.....++...
T Consensus 25 ~~g~~v~v~Er~~~~~----------~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 93 (396)
T PRK08163 25 RQGIKVKLLEQAAEIG----------EIGAGIQLGPNAFSALDALGVGEAARQRAV-FTDHLTMMDAVDAEEVVRIPTGQ 93 (396)
T ss_pred hCCCcEEEEeeCcccc----------cccceeeeCchHHHHHHHcCChHHHHhhcc-CCcceEEEeCCCCCEEEEeccch
Confidence 5799999999999873 345699999999999999999999988765 5677778875 344433433211
Q ss_pred C---CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEE
Q 013625 83 V---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 159 (439)
Q Consensus 83 ~---~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~ 159 (439)
. ......+.++|..|++.|.+.+.+.++++++++++|++++. +++.+.+.+.+|+++
T Consensus 94 ~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~ 153 (396)
T PRK08163 94 AFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--------------------DGDGVTVFDQQGNRW 153 (396)
T ss_pred hHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec--------------------CCCceEEEEcCCCEE
Confidence 0 01122357999999999999998877799999999999976 446788999999999
Q ss_pred EecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC-----ceeEEEEecCCceEEeecCCCc-eEEEEEcCc
Q 013625 160 YAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----YCAWQRFLPAGPIALLPIGDNF-SNIVWTMNP 233 (439)
Q Consensus 160 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~ 233 (439)
.||+||+|||.+|.+|+.+... .....+...+.+.++..... .....+..++++++++|+.++. .+++|....
T Consensus 154 ~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~ 232 (396)
T PRK08163 154 TGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHS 232 (396)
T ss_pred ecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECC
Confidence 9999999999999999998433 33344556666666543211 1223344567778889987654 455665543
Q ss_pred cChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecc-cccc
Q 013625 234 KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLS-LKHA 312 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 312 (439)
......... ....+.+.+.|. +|.+. +...+. .......+++. ...+
T Consensus 233 ~~~~~~~~~--~~~~~~l~~~~~-~~~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~ 280 (396)
T PRK08163 233 REQEEWGVK--DGSKEEVLSYFE-GIHPR-----------PRQMLD------------------KPTSWKRWATADREPV 280 (396)
T ss_pred CCCcccccC--CCCHHHHHHHHc-CCChH-----------HHHHHh------------------cCCceeEccccCCCcc
Confidence 322111100 111223333332 23221 110000 00111112222 2246
Q ss_pred cccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHh
Q 013625 313 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 392 (439)
Q Consensus 313 ~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~ 392 (439)
.+|..|||+|+|||||+|+|+.|||+|+||+||..|+++|... ..+ .+.+|+.|+++|++++..++..++.+..+
T Consensus 281 ~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~--~~~al~~y~~~R~~r~~~~~~~s~~~~~~ 355 (396)
T PRK08163 281 AKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---DGD--AEAAFALYESVRIPRTARVVLSAREMGRI 355 (396)
T ss_pred cccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---ccc--HHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 7899999999999999999999999999999999999999753 223 37899999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHhh
Q 013625 393 YSVDFGPLNILRAAAFHGA 411 (439)
Q Consensus 393 ~~~~~~~~~~~r~~~~~~~ 411 (439)
++.. .....+|+..+...
T Consensus 356 ~~~~-~~~~~~r~~~~~~~ 373 (396)
T PRK08163 356 YHAK-GVERQVRNLLWKGR 373 (396)
T ss_pred hCCC-CHHHHHHHHHhhcc
Confidence 9865 66788888777665
No 35
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=2e-37 Score=312.01 Aligned_cols=373 Identities=15% Similarity=0.112 Sum_probs=251.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC-
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD- 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (439)
.+|++|+|+||.+.. .....++.|+|+++++|+++|+++++......+..++.+++.+......++...
T Consensus 64 ~~G~~V~vlEr~~~~----------~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 133 (514)
T PLN02985 64 KDGRRVHVIERDLRE----------PERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGKEAVAPFPVDNN 133 (514)
T ss_pred HcCCeEEEEECcCCC----------CccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCEEEEEeCCCCCc
Confidence 469999999998754 233458999999999999999999988765556778878764322234444211
Q ss_pred -CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc--eeEEEeCCCc--
Q 013625 83 -VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLDLSDGT-- 157 (439)
Q Consensus 83 -~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~dg~-- 157 (439)
......++.++|.+|.+.|++.+.+.++++++++ +++++.. +++. +|++..++|+
T Consensus 134 ~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-------------------~~~~v~gV~~~~~dG~~~ 193 (514)
T PLN02985 134 NFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-------------------EKGVIKGVTYKNSAGEET 193 (514)
T ss_pred CCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-------------------cCCEEEEEEEEcCCCCEE
Confidence 1123456889999999999999998878999877 5777754 0122 3555556775
Q ss_pred EEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEE-EEEEeecCCceeEEEEecCCceEEeecCCCceEEEEEcCccCh
Q 013625 158 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAII-CTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDA 236 (439)
Q Consensus 158 ~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~ 236 (439)
++.||+||||||.+|.+|+.++............+. ...... .....+.++.+++++.++|++++..+++|..+.+..
T Consensus 194 ~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~ 272 (514)
T PLN02985 194 TALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLE-EPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNI 272 (514)
T ss_pred EEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCC-CCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCC
Confidence 467999999999999999999765432111111111 111111 123334555677889999999888777777654322
Q ss_pred hHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccc
Q 013625 237 SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYV 316 (439)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (439)
.. ....++.+.+........ ++.+.+.+.... .+. .....+|........|.
T Consensus 273 ~~---~~~~~~~~~~~~~~~p~~----------p~~l~~~f~~~~--------------~~~-~~~~~~p~~~l~~~~~~ 324 (514)
T PLN02985 273 PS---IANGEMSTFVKNTIAPQV----------PPKLRKIFLKGI--------------DEG-AHIKVVPTKRMSATLSD 324 (514)
T ss_pred CC---cChhhHHHHHHhcccccc----------CHHHHHHHHhhc--------------ccc-cceeecCcccccccccC
Confidence 11 122333333333111010 001111111000 000 01112232222234556
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhc-C
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS-V 395 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~-~ 395 (439)
++|++|||||||+|+|++|||+|+|++||..|++.|...-.-.+.....++|+.|+++|++++..++..+..+++++. .
T Consensus 325 ~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~ 404 (514)
T PLN02985 325 KKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVAS 404 (514)
T ss_pred CCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999874111111123689999999999999999999999999996 4
Q ss_pred CCChHHHHHHHHHHhhccChhHHHHHHHHHhcCCCCCCCC
Q 013625 396 DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 435 (439)
Q Consensus 396 ~~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~~~p~~~ 435 (439)
++.....+|+..|+.+..-+.....-+..++|+.+-|..+
T Consensus 405 ~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l 444 (514)
T PLN02985 405 TDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSL 444 (514)
T ss_pred CHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHH
Confidence 5666899999999999888889999999999998877654
No 36
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-37 Score=305.57 Aligned_cols=321 Identities=17% Similarity=0.176 Sum_probs=218.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+||.+.++ +.++++.|+|+++++|+++|+++++.+.+. +...+.+++..|......+....
T Consensus 21 ~~G~~v~v~E~~~~~~----------~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~ 89 (413)
T PRK07538 21 QRGIEVVVFEAAPELR----------PLGVGINLLPHAVRELAELGLLDALDAIGI-RTRELAYFNRHGQRIWSEPRGLA 89 (413)
T ss_pred hCCCcEEEEEcCCccc----------ccCcceeeCchHHHHHHHCCCHHHHHhhCC-CCcceEEEcCCCCEEeeccCCcc
Confidence 5699999999999873 345699999999999999999999988776 56778888877655443221111
Q ss_pred -CCccceeeeehHHHHHHHHHHhhcC-CCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC-----
Q 013625 84 -NKEILGCVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----- 156 (439)
Q Consensus 84 -~~~~~~~~i~R~~l~~~L~~~~~~~-~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg----- 156 (439)
......+.++|..|++.|++.+.+. |.++|+++++|++++. +++++.+.+.++
T Consensus 90 ~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~--------------------~~~~~~~~~~~~~~g~~ 149 (413)
T PRK07538 90 AGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ--------------------DADVTVVFLGDRAGGDL 149 (413)
T ss_pred cCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--------------------cCCceEEEEeccCCCcc
Confidence 1122346799999999999998763 6568999999999986 334466666543
Q ss_pred cEEEecEEEEecCCCchhhhhhCCCCCCCc-CCCeEEEEEEEeecCC-ceeEEEEe-cCCceEEeecCCC-----ceEEE
Q 013625 157 TSLYAKLVVGADGGKSRVRELAGFKTTGWS-YSQNAIICTVEHNKEN-YCAWQRFL-PAGPIALLPIGDN-----FSNIV 228 (439)
Q Consensus 157 ~~~~adlvVgADG~~S~vR~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~~g~~~~~p~~~~-----~~~~~ 228 (439)
.+++||+||||||++|.||+.+++...... .+...+.+.++.+... ......+. .++.+.++|+.++ ...+.
T Consensus 150 ~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~ 229 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLIN 229 (413)
T ss_pred ceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEE
Confidence 489999999999999999999976553323 3345555555443222 11222222 3567888887653 23455
Q ss_pred EEcCccCh----hHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeeccccee
Q 013625 229 WTMNPKDA----SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMV 304 (439)
Q Consensus 229 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (439)
|++..... .....++.+...+.+...+. +|..... ++. .+.........
T Consensus 230 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~-------------------~~i~~~~~~~~ 282 (413)
T PRK07538 230 WVAEVRVDDAGAPRREDWNRPGDLEDFLPHFA-DWRFDWL-------DVP-------------------ALIRAAEAIYE 282 (413)
T ss_pred EEEEEcCCccCCCcccccCCccCHHHHHHHhc-CCCCCcc-------cHH-------------------HHHhcCcceee
Confidence 55432221 11111222233344444332 2321100 000 01111222334
Q ss_pred eecccc-cccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHH
Q 013625 305 FPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 383 (439)
Q Consensus 305 ~~~~~~-~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~ 383 (439)
||+... .+++|.+|||+|||||||+|+|++|||+|+||+||..|+++|... .+ .+.+|+.|+++|++++..++
T Consensus 283 ~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~----~~--~~~aL~~Ye~~R~~~~~~~~ 356 (413)
T PRK07538 283 YPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH----GD--PEAALAAYEAERRPATAQIV 356 (413)
T ss_pred ccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc----CC--HHHHHHHHHHHhhHHHHHHH
Confidence 666654 378999999999999999999999999999999999999999873 23 47899999999999999999
Q ss_pred HHHHH
Q 013625 384 AVLDG 388 (439)
Q Consensus 384 ~~~~~ 388 (439)
..++.
T Consensus 357 ~~s~~ 361 (413)
T PRK07538 357 LANRL 361 (413)
T ss_pred HHhhh
Confidence 98887
No 37
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=2.3e-36 Score=297.04 Aligned_cols=356 Identities=13% Similarity=0.080 Sum_probs=237.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||.+.+. .....++..|+|+++++|+++|+++++.+.+. +...+.++++.+ ...++....
T Consensus 23 ~~G~~v~viE~~~~~~--------~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~~~--~~~~~~~~~ 91 (390)
T TIGR02360 23 KAGIDNVILERQSRDY--------VLGRIRAGVLEQGTVDLLREAGVDERMDREGL-VHEGTEIAFDGQ--RFRIDLKAL 91 (390)
T ss_pred HCCCCEEEEECCCCcc--------cCCceeEeeECHHHHHHHHHCCChHHHHhcCc-eecceEEeeCCE--EEEEecccc
Confidence 4799999999998641 01234577799999999999999999988776 566777776543 333332222
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCc--EEE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLY 160 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~ 160 (439)
........+.+..|.+.|.+.+.+.+ ++++++++++++.. .++..+.|++. ||+ +++
T Consensus 92 ~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~v~~~~-------------------~~~~~~~V~~~~~g~~~~i~ 151 (390)
T TIGR02360 92 TGGKTVMVYGQTEVTRDLMEAREAAG-LTTVYDADDVRLHD-------------------LAGDRPYVTFERDGERHRLD 151 (390)
T ss_pred CCCceEEEeCHHHHHHHHHHHHHhcC-CeEEEeeeeEEEEe-------------------cCCCccEEEEEECCeEEEEE
Confidence 22122234568899999999998876 89999999988854 02245667775 775 799
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCC--eEEEEEEEeecCCceeEEEEecCCceEEeecCC-CceEEEEEcCccChh
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQ--NAIICTVEHNKENYCAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKDAS 237 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~~~ 237 (439)
||+||||||.+|.||+.++.......... ..+.+.+...........+...++.+.++|+.+ +...+++..+...
T Consensus 152 adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 229 (390)
T TIGR02360 152 CDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHERGFALCSMRSATRSRYYVQVPLTD-- 229 (390)
T ss_pred eCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCCceEEEeccCCCcceEEEEcCCCC--
Confidence 99999999999999999865432211111 233333322111211123335666677777754 3333455443322
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccccccc
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (439)
....+..+.+.+.+...+. +. ..+.+.. .+ ......+|+.....++|..
T Consensus 230 ~~~~~~~~~~~~~l~~~~~----~~----------~~~~~~~------------~~-----~~~~~~~~l~~~~~~~~~~ 278 (390)
T TIGR02360 230 KVEDWSDDRFWAELKRRLP----SE----------AAERLVT------------GP-----SIEKSIAPLRSFVCEPMQY 278 (390)
T ss_pred ChhhCChhHHHHHHHHhcC----ch----------hhhhhcc------------CC-----ccceeeeeHHhhccccCcc
Confidence 1223444556666665432 10 0000000 00 0011234666666788999
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 397 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~~ 397 (439)
|||+|||||||.|+|+.|||+|+||+||..|+++|..... ++ ...+|+.|++.|++++..++..++.+..+++...
T Consensus 279 grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~--~~--~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~ 354 (390)
T TIGR02360 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQ--EG--SSAGIEGYSARALARVWKAERFSWWMTSLLHRFP 354 (390)
T ss_pred CCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhc--cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999987543 12 3789999999999999999999999999987443
Q ss_pred ---ChHHHHHHHHHHhhccChhHHHHHHHHHhc
Q 013625 398 ---GPLNILRAAAFHGAQYISPLKRNIISYASG 427 (439)
Q Consensus 398 ---~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g 427 (439)
.+...++.+-+..+-..|.....+..+-.|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
T TIGR02360 355 DTDAFDQRIQQAELEYLLGSEAAQATLAENYVG 387 (390)
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHHhccC
Confidence 344456666677777778888887777666
No 38
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=7.6e-37 Score=303.58 Aligned_cols=329 Identities=18% Similarity=0.215 Sum_probs=220.9
Q ss_pred CC-cEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcC---ccceEEE--EeCCCcceeEE
Q 013625 5 KH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA---YFDKMQV--WDYTGLGYTKY 78 (439)
Q Consensus 5 ~G-~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~---~~~~~~~--~~~~~~~~~~~ 78 (439)
+| ++|+|+||++.. ...+.++.|+|+++++|+++|+.+.+.+.+.. ....+.+ .++........
T Consensus 22 ~g~~~v~v~Er~~~~----------~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (414)
T TIGR03219 22 HSHLNVQLFEAAPAF----------GEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWRNGSDASYLGA 91 (414)
T ss_pred cCCCCEEEEecCCcC----------CCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEEecCccceeee
Confidence 46 699999999887 34566999999999999999999888775531 1122212 22221111111
Q ss_pred eccCCCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcE
Q 013625 79 NARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 158 (439)
Q Consensus 79 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~ 158 (439)
. .........++|..|.+.|.+.+. ++.++++++|++++. ++++++|+++||++
T Consensus 92 ~---~~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~--------------------~~~~~~v~~~~g~~ 145 (414)
T TIGR03219 92 T---IAPGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEE--------------------QAEEVQVLFTDGTE 145 (414)
T ss_pred e---ccccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEe--------------------cCCcEEEEEcCCCE
Confidence 1 011111246999999999999884 367899999999987 45679999999999
Q ss_pred EEecEEEEecCCCchhhhhhCC-----CCCCCcCCCeEEEEEEEeecC----------C---ceeEEEEecCCceEEeec
Q 013625 159 LYAKLVVGADGGKSRVRELAGF-----KTTGWSYSQNAIICTVEHNKE----------N---YCAWQRFLPAGPIALLPI 220 (439)
Q Consensus 159 ~~adlvVgADG~~S~vR~~l~~-----~~~~~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~g~~~~~p~ 220 (439)
+.+|+||||||.+|.||+.+.. ...+...+..++.+.++.... . .....++.++++++++|+
T Consensus 146 ~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (414)
T TIGR03219 146 YRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPV 225 (414)
T ss_pred EEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEEC
Confidence 9999999999999999999842 122334456677776653210 0 112334567788888999
Q ss_pred CCCce-EEEEEcCccChh-----HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcc
Q 013625 221 GDNFS-NIVWTMNPKDAS-----DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR 294 (439)
Q Consensus 221 ~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (439)
.++.. +++++....... .......+...+.+.+.+. +|++. +..++
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----------v~~~~---------------- 277 (414)
T TIGR03219 226 RQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFA-GWGDA-----------ARALL---------------- 277 (414)
T ss_pred CCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhc-CCCHH-----------HHHHH----------------
Confidence 88654 333333221100 0001112223344444443 44332 11111
Q ss_pred eeeecccceeeecccc-cccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 013625 295 VVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 373 (439)
Q Consensus 295 ~~~~~~~~~~~~~~~~-~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~ 373 (439)
+.......|++... .+++|++|||+|+|||||+|+|+.|||+|+||+||..|+++|......+.+ .+.+|+.|++
T Consensus 278 --~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~--~~~al~~Ye~ 353 (414)
T TIGR03219 278 --ECIPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGD--LPALLEAYDD 353 (414)
T ss_pred --HhCCCCCceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcch--HHHHHHHHHH
Confidence 11111123444432 368899999999999999999999999999999999999999875433333 3889999999
Q ss_pred hhchhhHHHHHHHHHHHHhhcCCCChHH
Q 013625 374 ERKPANIVMMAVLDGFQKAYSVDFGPLN 401 (439)
Q Consensus 374 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (439)
+|++++..++..++.+..+++..++...
T Consensus 354 ~R~~r~~~~~~~s~~~~~~~~~~~~~~~ 381 (414)
T TIGR03219 354 VRRPRACRVQRTSREAGELYELRDPAVG 381 (414)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCChhcc
Confidence 9999999999999999999987665433
No 39
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=3.4e-36 Score=304.39 Aligned_cols=369 Identities=17% Similarity=0.101 Sum_probs=246.3
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+||.+... .....|+.|+|+++++|+++|+++.+.+.+. ++.++.+++.+|... ..+.
T Consensus 54 r~G~~V~VlEr~~~~~---------~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~-~~~~~~v~~~~G~~~-~i~~--- 119 (567)
T PTZ00367 54 KQGRKVLMLERDLFSK---------PDRIVGELLQPGGVNALKELGMEECAEGIGM-PCFGYVVFDHKGKQV-KLPY--- 119 (567)
T ss_pred hcCCEEEEEccccccc---------cchhhhhhcCHHHHHHHHHCCChhhHhhcCc-ceeeeEEEECCCCEE-EecC---
Confidence 4699999999987321 1123578999999999999999999887776 577888888766432 2221
Q ss_pred CCccceeeeehHHHHHHHHHHh--hcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC------
Q 013625 84 NKEILGCVVENKVLHSSLLSCM--QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD------ 155 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~--~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------ 155 (439)
.....++.++|..|.+.|.+.+ ...++++++. .+|+++..+..+- .+...+|++++.+
T Consensus 120 ~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~-------------~~~v~gV~~~~~~~~~~~~ 185 (567)
T PTZ00367 120 GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGF-------------SERAYGVEYTEAEKYDVPE 185 (567)
T ss_pred CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCcc-------------CCeeEEEEEecCCcccccc
Confidence 2234467889999999999988 3346689865 4788885511100 0011234444433
Q ss_pred -----------------CcEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEE-eecCC-ceeEEEEecCCceE
Q 013625 156 -----------------GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKEN-YCAWQRFLPAGPIA 216 (439)
Q Consensus 156 -----------------g~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~ 216 (439)
|+++.||+||||||.+|.||+.++.......+...+....+. ...+. .....++.++++++
T Consensus 186 ~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~ 265 (567)
T PTZ00367 186 NPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPIL 265 (567)
T ss_pred cccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEE
Confidence 678999999999999999999997653333333333222222 12222 33345678999999
Q ss_pred EeecCCCceEEEEEcCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCccee
Q 013625 217 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 296 (439)
Q Consensus 217 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (439)
++|++++..++++.+..+... +.++..+.+.+.....+ .+++.+.+... .
T Consensus 266 ~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l----------~~~l~~~f~~~---------------l 315 (567)
T PTZ00367 266 SYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHL----------PENMRESFIRA---------------S 315 (567)
T ss_pred EEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccC----------cHHHHHHHHHh---------------h
Confidence 999998876655444332110 11122233322111011 01111111110 0
Q ss_pred eecccceeeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhh-cCCCCC----hHHHHH--
Q 013625 297 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA-VGADIG----EASLLK-- 369 (439)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~-~~~~~~----~~~~l~-- 369 (439)
........+|.......+|..+|++|||||||+|+|++|||+|+||+||..|+++|..... .+.+++ ..++|+
T Consensus 316 ~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~ 395 (567)
T PTZ00367 316 KDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAA 395 (567)
T ss_pred cccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHh
Confidence 0001112344444445567789999999999999999999999999999999999976431 111221 256677
Q ss_pred --HHHHhhchhhHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhhccChhHHHHHHHHHhcCCCCCCCC
Q 013625 370 --KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 435 (439)
Q Consensus 370 --~Ye~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~~~p~~~ 435 (439)
.|++.|+++...++..++.++++++. ..+|+..|+.+..-.....--+..++|+.+-|..+
T Consensus 396 ~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~~l 458 (567)
T PTZ00367 396 ILSYARNRKTHASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGPMSLLSGLDPSPGGL 458 (567)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCccccccHHHHcCCCCCcHHH
Confidence 99999999999999999999999987 47999999999998889999999999998777643
No 40
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=8.4e-37 Score=281.55 Aligned_cols=412 Identities=33% Similarity=0.551 Sum_probs=337.8
Q ss_pred CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEec
Q 013625 1 MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNA 80 (439)
Q Consensus 1 ~~~~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
||..+-.+|+|+|....+ ..+-++......-|...++|++...++.+|+|+.+...-+.++.++.+||+.....+.++.
T Consensus 58 np~~~~~kv~Lld~~~s~-kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~~~~~~~~v~Ds~s~a~I~~~~ 136 (481)
T KOG3855|consen 58 NPPFQDKKVLLLDAGDSP-KLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRYQKFSRMLVWDSCSAALILFDH 136 (481)
T ss_pred CCccchheeeEEecccCc-cccccccCccccceeecCCcchHHHHHhcCHHHHhhhhccccccceeeecccchhhhhhcc
Confidence 577788899999999663 2233334455567889999999999999999999999888889999999999888888875
Q ss_pred cCCCCccceeeeehHHHHHHHH--HHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcE
Q 013625 81 RDVNKEILGCVVENKVLHSSLL--SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 158 (439)
Q Consensus 81 ~~~~~~~~~~~i~R~~l~~~L~--~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~ 158 (439)
... ..+.++.+....++-.|+ +...+..+++|....+++.+... . . -.. .+.+.-..+++.||..
T Consensus 137 d~~-~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~---~---~-l~~-----~~n~~~~~i~l~dg~~ 203 (481)
T KOG3855|consen 137 DNV-GIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIP---E---Y-LIK-----NDNGMWFHITLTDGIN 203 (481)
T ss_pred ccc-cccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccc---c---c-cCC-----CCCcceEEEEeccCce
Confidence 433 234578888889999999 56666688999999999999761 0 0 000 1144778899999999
Q ss_pred EEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC---ceeEEEEecCCceEEeecCCCceEEEEEcCccC
Q 013625 159 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKD 235 (439)
Q Consensus 159 ~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~ 235 (439)
+..||||||||.||.||+..++.....-|...++.+...++.+. ..+|++|.|.|++.+.|+.++...++|.+.+..
T Consensus 204 ~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d~~s~LvWSts~~~ 283 (481)
T KOG3855|consen 204 FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSDTLSSLVWSTSPEN 283 (481)
T ss_pred eeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeecccccccccceeecCHHH
Confidence 99999999999999999999999988889999999988877632 788999999999999999999999999999999
Q ss_pred hhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCC-----cccchhccccCccccccccccCCcceeeeccccee-eeccc
Q 013625 236 ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG-----SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMV-FPLSL 309 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 309 (439)
.+....++++.|.+.+.+.|.-+...-.-..... ....-..++...... .....||.+.++...... ||+..
T Consensus 284 a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~--~~~q~pp~V~~v~dksRa~FPLgf 361 (481)
T KOG3855|consen 284 ASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRL--ANQQYPPSVFEVGDKSRAQFPLGF 361 (481)
T ss_pred HHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcc--cccccCCeEEEecccceeeccccc
Confidence 8899999999999999988854433221111000 000001111111111 111467888888777554 99999
Q ss_pred ccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHH
Q 013625 310 KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGF 389 (439)
Q Consensus 310 ~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~ 389 (439)
.+++.|+.+|+.|+|||||-++|..|||.|+++.|...|...|..+...+.|+++..-|+.|+.+|.+....++...+.+
T Consensus 362 ~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl 441 (481)
T KOG3855|consen 362 GHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKL 441 (481)
T ss_pred ccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCChHHHHHHHHHHhhccChhHHHHHHHHHhcC
Q 013625 390 QKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 428 (439)
Q Consensus 390 ~~~~~~~~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~ 428 (439)
.++|+.+.++...+|...+.+.+.+++++..+|.+.++.
T Consensus 442 ~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~~ 480 (481)
T KOG3855|consen 442 HKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASKK 480 (481)
T ss_pred HHHHhccCCcEEEEeccchhhccccccHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998874
No 41
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=306.68 Aligned_cols=319 Identities=20% Similarity=0.262 Sum_probs=222.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCc--cceEEE-EeCCCcceeEEec
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY--FDKMQV-WDYTGLGYTKYNA 80 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~--~~~~~~-~~~~~~~~~~~~~ 80 (439)
.+|++|+||||.+.+ ...++++.++++++++|+++|+++++.+.+.+. .....+ .+..|.....+..
T Consensus 28 ~~G~~v~viEr~~~~----------~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~ 97 (545)
T PRK06126 28 RRGVDSILVERKDGT----------AFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTRLTGYELARFRL 97 (545)
T ss_pred HCCCcEEEEeCCCCC----------CCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEecCCCceeeeeec
Confidence 469999999999876 566789999999999999999999999877521 112222 2233433333322
Q ss_pred cCC--------------CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC
Q 013625 81 RDV--------------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 146 (439)
Q Consensus 81 ~~~--------------~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~ 146 (439)
... ..+..++.++|..|+++|.+.+.+.++++|+++++|++++. ++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--------------------~~ 157 (545)
T PRK06126 98 PSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ--------------------DA 157 (545)
T ss_pred CCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEE--------------------CC
Confidence 110 11223577999999999999998876799999999999987 34
Q ss_pred ceeEEEeC---CCc--EEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeec-----CCce--eEEEEecCCc
Q 013625 147 HLAKLDLS---DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYC--AWQRFLPAGP 214 (439)
Q Consensus 147 ~~v~v~~~---dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~g~ 214 (439)
+++++++. +|+ ++.+|+||||||.+|.||+.+++...+..+....+...+..+. .... .+.++.++..
T Consensus 158 ~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 237 (545)
T PRK06126 158 DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRR 237 (545)
T ss_pred CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCcc
Confidence 55666663 464 7999999999999999999999887766655444444444321 1112 2233345556
Q ss_pred eEEeecCCCceEEEEE-cCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 013625 215 IALLPIGDNFSNIVWT-MNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 293 (439)
Q Consensus 215 ~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (439)
..+++..+.. .+.+. ..... .....+.+.+.+.+.+.+. .. ++.
T Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~----------------------------~~~ 282 (545)
T PRK06126 238 GVLVAIDGRD-EWLFHQLRGGE--DEFTIDDVDARAFVRRGVG----ED----------------------------IDY 282 (545)
T ss_pred EEEEEECCCC-eEEEEEecCCC--CCCCCCHHHHHHHHHHhcC----CC----------------------------CCe
Confidence 6666665433 22222 22221 1123455566666665332 00 001
Q ss_pred ceeeecccceeeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 013625 294 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 373 (439)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~ 373 (439)
.+. ....|.+....+++|.+|||+|+|||||.|+|++|||+|+||+||..||++|...++.. ..+.+|+.|++
T Consensus 283 ~i~----~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~---~~~~lL~~Y~~ 355 (545)
T PRK06126 283 EVL----SVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW---AGPALLDSYEA 355 (545)
T ss_pred EEE----eecccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC---CcHHHHhhhHH
Confidence 111 12235666677899999999999999999999999999999999999999999876532 23789999999
Q ss_pred hhchhhHHHHHHHHHHHHhhc
Q 013625 374 ERKPANIVMMAVLDGFQKAYS 394 (439)
Q Consensus 374 ~r~~~~~~~~~~~~~~~~~~~ 394 (439)
+|++++..++..+......+.
T Consensus 356 eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 356 ERRPIAARNTDYARRNADALG 376 (545)
T ss_pred HhhHHHHHHHHHHHHHHHHhc
Confidence 999999999999988777654
No 42
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=295.12 Aligned_cols=317 Identities=20% Similarity=0.164 Sum_probs=215.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+||.+.+. ...+.++.++|+++++|+++|+.+.. +.+. +.....+++.++......+
T Consensus 27 ~~G~~v~v~E~~~~~~---------~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~-~~~~~~~~~~~g~~~~~~~---- 91 (386)
T PRK07236 27 RAGWDVDVFERSPTEL---------DGRGAGIVLQPELLRALAEAGVALPA-DIGV-PSRERIYLDRDGRVVQRRP---- 91 (386)
T ss_pred hCCCCEEEEecCCCCc---------CCCCceeEeCHHHHHHHHHcCCCccc-cccc-CccceEEEeCCCCEeeccC----
Confidence 4699999999998642 22345889999999999999998765 4444 4556667776664332221
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
.. ...+.|..|.+.|.+.+ ++++|+++++|++++. +++.++|+++||++++||+
T Consensus 92 -~~--~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~ad~ 145 (386)
T PRK07236 92 -MP--QTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQ--------------------DGDRVTARFADGRRETADL 145 (386)
T ss_pred -CC--ccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEe--------------------cCCeEEEEECCCCEEEeCE
Confidence 11 12367889999998876 4578999999999987 4567999999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeec-CC-------ceeEEEEecCCceEEeecCC---------CceE
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-EN-------YCAWQRFLPAGPIALLPIGD---------NFSN 226 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~g~~~~~p~~~---------~~~~ 226 (439)
||||||++|.||+.+.........+...+.+.+.... +. .....++.+++.++.+|+++ ...+
T Consensus 146 vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (386)
T PRK07236 146 LVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYN 225 (386)
T ss_pred EEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEE
Confidence 9999999999999985444444445556666554221 11 11223335666777888764 2345
Q ss_pred EEEEcCccChhHhh-----------------CCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccc
Q 013625 227 IVWTMNPKDASDCK-----------------SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 289 (439)
Q Consensus 227 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (439)
++|+.......... ....+...+.+.+.+...|.+. +..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~------------- 281 (386)
T PRK07236 226 WVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV-----------FAE------------- 281 (386)
T ss_pred EEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH-----------HHH-------------
Confidence 66766443210000 0012334444444332112221 111
Q ss_pred cCCcceeeecccceeeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHH
Q 013625 290 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 369 (439)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~ 369 (439)
+.+.+.....+++.....++|..|||+|+|||||+|+|+.|||+|+||+||+.|+++|.... .+ ...+|+
T Consensus 282 -----~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~---~~--~~~al~ 351 (386)
T PRK07236 282 -----LVEATAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA---GD--IDAALA 351 (386)
T ss_pred -----HHhhCcCchhhhhhcccCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc---cc--hHHHHH
Confidence 11111111223444444678999999999999999999999999999999999999998741 22 378999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHhhcC
Q 013625 370 KYEAERKPANIVMMAVLDGFQKAYSV 395 (439)
Q Consensus 370 ~Ye~~r~~~~~~~~~~~~~~~~~~~~ 395 (439)
.|++.|++++..++..++.++.+++.
T Consensus 352 ~Ye~~R~~r~~~~~~~s~~~~~~~~~ 377 (386)
T PRK07236 352 AWEAERLAVGAAIVARGRRLGARLQA 377 (386)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888753
No 43
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=1.2e-36 Score=296.19 Aligned_cols=314 Identities=22% Similarity=0.351 Sum_probs=208.7
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCc-cceEEEEeC-CCcc------e
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY-FDKMQVWDY-TGLG------Y 75 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~-~~~~~~~~~-~~~~------~ 75 (439)
.+|++|+||||++.++ ..++++.|+|+++++|+++|+++++.+.+... .....+++. .+.. .
T Consensus 22 ~~G~~v~i~E~~~~~~----------~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (356)
T PF01494_consen 22 RAGIDVTIIERRPDPR----------PKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISDSRIWVENPQ 91 (356)
T ss_dssp HTTCEEEEEESSSSCC----------CSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTTSEEEEEEEE
T ss_pred hcccccccchhccccc----------ccccccccccccccccccccchhhhhhhcccccceeeEeecccCCccceeeecc
Confidence 4699999999999984 44469999999999999999999999977522 334444544 1111 1
Q ss_pred eEEeccCCCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-
Q 013625 76 TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS- 154 (439)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~- 154 (439)
..............+.++|..|+++|.+.+.+.| ++|+++++|++++. +.+++++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~--------------------d~~~~~~~~~~ 150 (356)
T PF01494_consen 92 IREDMEIDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQ--------------------DDDGVTVVVRD 150 (356)
T ss_dssp EEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEE--------------------ETTEEEEEEEE
T ss_pred cceeeeccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccc--------------------ccccccccccc
Confidence 1111111123455678999999999999999998 99999999999987 3455554443
Q ss_pred --CCc--EEEecEEEEecCCCchhhhhhCCCCCCCcCC--CeEEEEEEEeecC--Cce-eEEEEecCCceEEeecCC-Cc
Q 013625 155 --DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYS--QNAIICTVEHNKE--NYC-AWQRFLPAGPIALLPIGD-NF 224 (439)
Q Consensus 155 --dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~--~~~~~~~~~~~~~--~~~-~~~~~~~~g~~~~~p~~~-~~ 224 (439)
+|. +++||+||||||++|.||+.+++........ ..++...+..... ... .+....+.+.++++|..+ +.
T Consensus 151 ~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 230 (356)
T PF01494_consen 151 GEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDR 230 (356)
T ss_dssp TCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTE
T ss_pred ccCCceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCcc
Confidence 343 7999999999999999999998774433222 2222222222222 122 233333444467899887 44
Q ss_pred eEEEEEcCccCh--hHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccc
Q 013625 225 SNIVWTMNPKDA--SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 302 (439)
Q Consensus 225 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (439)
..++|....... ........+.+.+.+...+. +. .........
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~----------------~~~~~~~~~ 275 (356)
T PF01494_consen 231 SRFVWFLPFDESKEERPEEFSPEELFANLPEIFG-------------------PD----------------LLETEIDEI 275 (356)
T ss_dssp EEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHH-------------------TC----------------HHHHEEEEE
T ss_pred ceEEEeeecccccccccccccccccccccccccc-------------------cc----------------ccccccccc
Confidence 444454433221 11111222344433333221 00 000112233
Q ss_pred eeeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHH
Q 013625 303 MVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVM 382 (439)
Q Consensus 303 ~~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~ 382 (439)
..|++......+|.+|||+|||||||+|+|++|||+|+||+||..|+++|...++ +. ...++|+.|+++|+++++++
T Consensus 276 ~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~-g~--~~~~~l~~Y~~~r~~~~~~~ 352 (356)
T PF01494_consen 276 SAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALK-GE--ASEEALKAYEQERRPRARKA 352 (356)
T ss_dssp EEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHT-TS--SHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhc-CC--cHHHHHHHHHHHHHHHHHHH
Confidence 4577777778999999999999999999999999999999999999999999876 22 34789999999999999998
Q ss_pred HHHH
Q 013625 383 MAVL 386 (439)
Q Consensus 383 ~~~~ 386 (439)
++++
T Consensus 353 ~~~~ 356 (356)
T PF01494_consen 353 VQFD 356 (356)
T ss_dssp HHHH
T ss_pred HhCC
Confidence 8763
No 44
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=1.7e-33 Score=285.90 Aligned_cols=345 Identities=17% Similarity=0.165 Sum_probs=222.1
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCC--chhhhhhhcCccceE-EEEeC-CCcceeEEe
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQYVQQHRHAYFDKM-QVWDY-TGLGYTKYN 79 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl--~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~ 79 (439)
.+|++|+|+||.+.... ......+++.|+|+++++|+++|+ .+++.+.+......+ .+.++ .|.....++
T Consensus 102 r~Gi~V~V~Er~~~~~r------~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~~~~d~~~G~~~~~~~ 175 (668)
T PLN02927 102 KKGFDVLVFEKDLSAIR------GEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRINGLVDGISGSWYVKFD 175 (668)
T ss_pred hcCCeEEEEeccccccc------cccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceeeeeeecCCCceEeecc
Confidence 46999999999874310 001122579999999999999995 567777665222222 22332 333333433
Q ss_pred ccCC---CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC
Q 013625 80 ARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG 156 (439)
Q Consensus 80 ~~~~---~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg 156 (439)
.... ...+.++.++|..|+++|.+.+. ...++++++|++++. .++.++|+++||
T Consensus 176 ~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~--------------------~~d~VtV~~~dG 232 (668)
T PLN02927 176 TFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFED--------------------SGDKVTVVLENG 232 (668)
T ss_pred ccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEE--------------------eCCEEEEEECCC
Confidence 2110 11234678999999999988774 235799999999987 557899999999
Q ss_pred cEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC--ceeEEEE-ecCCceEEeecCCCceEEEEEcCc
Q 013625 157 TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCAWQRF-LPAGPIALLPIGDNFSNIVWTMNP 233 (439)
Q Consensus 157 ~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~ 233 (439)
+++.+|+||||||++|+||+.+.........++.++.+.++..... ...+..+ ....++.+++..++...+++....
T Consensus 233 ~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~ 312 (668)
T PLN02927 233 QRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEE 312 (668)
T ss_pred CEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEEC
Confidence 9999999999999999999998554444445566666666542221 1112223 344555566666665444333222
Q ss_pred cChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccc-c
Q 013625 234 KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKH-A 312 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (439)
+.. .....+...+.+.+.+. +|.+... ++++. ++ ......++++... .
T Consensus 313 p~~---~~~~~~~~~e~L~~~f~-~w~~~v~-------elI~~----t~----------------~~~i~~~~iyd~~p~ 361 (668)
T PLN02927 313 PAG---GADAPNGMKKRLFEIFD-GWCDNVL-------DLLHA----TE----------------EDAILRRDIYDRSPG 361 (668)
T ss_pred Ccc---ccccchhHHHHHHHHhc-cCCHHHH-------HHHHh----Cc----------------cccceeeeEEeccCC
Confidence 111 11123456666666654 5543211 11110 00 0011124444332 4
Q ss_pred cccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhc----CCCCChHHHHHHHHHhhchhhHHHHHHHHH
Q 013625 313 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GADIGEASLLKKYEAERKPANIVMMAVLDG 388 (439)
Q Consensus 313 ~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~----~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~ 388 (439)
.+|.+|||+|+|||||+|+|+.|||+|+||+||+.|+.+|..+.+. +.+.....+|+.|+++|++++..++..++.
T Consensus 362 ~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~ 441 (668)
T PLN02927 362 FTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARM 441 (668)
T ss_pred CccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999886532 122235789999999999999999998655
Q ss_pred HHHhhc-------CCCChHHHHHHHHH
Q 013625 389 FQKAYS-------VDFGPLNILRAAAF 408 (439)
Q Consensus 389 ~~~~~~-------~~~~~~~~~r~~~~ 408 (439)
...++. ...++..++|...+
T Consensus 442 a~~~~~~~~~y~~~~~~p~~~~~~~~~ 468 (668)
T PLN02927 442 AAIMASTYKAYLGVGLGPLSFLTKFRV 468 (668)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHhcCC
Confidence 444432 23456666675544
No 45
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=8.3e-32 Score=250.75 Aligned_cols=329 Identities=19% Similarity=0.198 Sum_probs=191.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC
Q 013625 3 LTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 3 ~~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
+++|++|+|+|++..+|.. ++++.|.-++.++|+.+|+.+.+.+.+.+--..+-+....|+...++...+
T Consensus 22 ~r~G~~v~VlE~~e~~R~~----------g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg~~~~~~~~~~ 91 (420)
T KOG2614|consen 22 HRKGIDVVVLESREDPRGE----------GTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSGKEVSRILYGE 91 (420)
T ss_pred HHcCCeEEEEeeccccccC----------CcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCCCeeEecccCC
Confidence 4689999999999988744 558999999999999999999999999933444445566666666665332
Q ss_pred CCCccceeee-ehHHHHHHHHHHhhcCCCcEEEcCC------eeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC
Q 013625 83 VNKEILGCVV-ENKVLHSSLLSCMQNTEFQKTIYPS------RLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD 155 (439)
Q Consensus 83 ~~~~~~~~~i-~R~~l~~~L~~~~~~~~~v~v~~~~------~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d 155 (439)
.+.+-..+ .|..++.+|.++.+ .+ +|++++ ....++. .+....+.+.|
T Consensus 92 --~~~~i~r~~~r~ll~~lL~~a~~-~~--~ikf~~~~~~~~~~~~~~~--------------------~~~~~~v~l~~ 146 (420)
T KOG2614|consen 92 --PDEYILRINRRNLLQELLAEALP-TG--TIKFHSNLSCTSKDVEIET--------------------LGKKLVVHLSD 146 (420)
T ss_pred --chHHHHHHHHHHHHHHHHHhhcC-CC--eeecccccccccccceeee--------------------cccccceecCC
Confidence 22222334 45555555555554 44 566664 2222222 45667789999
Q ss_pred CcEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEE--EeecCCceeEEEEecCCceEEeecCCCceEEEEEcCc
Q 013625 156 GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTV--EHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNP 233 (439)
Q Consensus 156 g~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~ 233 (439)
|.++++|+||||||++|.||+.++... +....+.+++... +...+...... ....+.+..-|.+.....++|..+.
T Consensus 147 g~~~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~~~~~~~~~~~~vf-~~~~~~~~~~~~~~~~~~~y~~~~k 224 (420)
T KOG2614|consen 147 GTTVKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLGFIPNGIPFGKKVF-AIYGNGLHSWPRPGFHLIAYWFLDK 224 (420)
T ss_pred CcEEEeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeeeeccCCCCccccee-cccCCeEEEcccCCceEEEEEeecC
Confidence 999999999999999999999998775 4445556666543 33333311111 1223333333444444444454432
Q ss_pred c----------ChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccce
Q 013625 234 K----------DASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERM 303 (439)
Q Consensus 234 ~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (439)
+ +++.... ...+..+.+.+.++ +++.. .+. + ..+......+.
T Consensus 225 ~~t~t~~~~~~e~~~l~~-~~~~v~~~~~en~~---------------d~i~~-~~~------e-----~i~~t~l~~r~ 276 (420)
T KOG2614|consen 225 SLTSTDFAPFDEPEKLKK-TSLEVVDFFPENFP---------------DIIEL-TGE------E-----SIVRTPLADRP 276 (420)
T ss_pred CcccccccCcCCHHHHhh-hHHHHHHHhHHhHH---------------HHHHh-cCh------H-----HhhhchhhhcC
Confidence 2 2222111 11111111111111 01000 000 0 00000011111
Q ss_pred eeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhc----CCCCC--------hHHHHHHH
Q 013625 304 VFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GADIG--------EASLLKKY 371 (439)
Q Consensus 304 ~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~----~~~~~--------~~~~l~~Y 371 (439)
.||+-. .+...++|+|+|||||+|.|+.|||+|.|+||+.+||++|.++.++ ++... ...++..|
T Consensus 277 p~~~i~---~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y 353 (420)
T KOG2614|consen 277 PWPLIS---VKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSY 353 (420)
T ss_pred CcCeee---eccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHH
Confidence 122211 2223468999999999999999999999999999999999998652 11111 25678889
Q ss_pred HHhhchhhHHHHHHHHHHHHhhcCCCCh
Q 013625 372 EAERKPANIVMMAVLDGFQKAYSVDFGP 399 (439)
Q Consensus 372 e~~r~~~~~~~~~~~~~~~~~~~~~~~~ 399 (439)
...|..+.-+...-+...+.+.+...+.
T Consensus 354 ~~~r~~r~~rl~~~~~l~gi~~~s~~~l 381 (420)
T KOG2614|consen 354 KEERWRRLLRLKVDAYLVGILPQSFGPL 381 (420)
T ss_pred HHHHHHHHhhhhhhheeeEeccccccch
Confidence 9988655544444333333333444443
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.97 E-value=6.2e-28 Score=239.68 Aligned_cols=312 Identities=17% Similarity=0.143 Sum_probs=205.0
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||++. +.+. ||.+|+ .++|+++|+.+++... .+.++.++.+.+. ...+....
T Consensus 60 ~~G~~VlllEr~~~-~~k~----------cgg~i~---~~~l~~lgl~~~~~~~---~i~~~~~~~p~~~-~v~~~~~~- 120 (450)
T PLN00093 60 KGGIETFLIERKLD-NAKP----------CGGAIP---LCMVGEFDLPLDIIDR---KVTKMKMISPSNV-AVDIGKTL- 120 (450)
T ss_pred hCCCcEEEEecCCC-CCCC----------cccccc---HhHHhhhcCcHHHHHH---HhhhheEecCCce-EEEecccC-
Confidence 57999999999864 3333 477776 4677889998877664 3356666665543 33333111
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC-------C
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-------G 156 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-------g 156 (439)
....+.+.++|..|++.|.+++.+.| ++++.+ +++++.. ..+ .++.+.|++.+ |
T Consensus 121 ~~~~~~~~v~R~~~d~~L~~~A~~~G-a~~~~~-~v~~i~~---------~~~--------~~~~~~v~~~~~~~~~~~g 181 (450)
T PLN00093 121 KPHEYIGMVRREVLDSFLRERAQSNG-ATLING-LFTRIDV---------PKD--------PNGPYVIHYTSYDSGSGAG 181 (450)
T ss_pred CCCCeEEEecHHHHHHHHHHHHHHCC-CEEEec-eEEEEEe---------ccC--------CCCcEEEEEEeccccccCC
Confidence 11233346999999999999999987 999876 5888764 000 12445565532 3
Q ss_pred --cEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeec-----CCceeEEEE----ecCCceEEeecCCCce
Q 013625 157 --TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYCAWQRF----LPAGPIALLPIGDNFS 225 (439)
Q Consensus 157 --~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~g~~~~~p~~~~~~ 225 (439)
.+++||+||||||++|.||+.++.... .+ ...+...+.... .......++ .++++.|+||.++ ..
T Consensus 182 ~~~~v~a~~VIgADG~~S~vrr~lg~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~-~~ 257 (450)
T PLN00093 182 TPKTLEVDAVIGADGANSRVAKDIDAGDY--DY-AIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCD-HV 257 (450)
T ss_pred CccEEEeCEEEEcCCcchHHHHHhCCCCc--ce-eEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCC-cE
Confidence 489999999999999999999986531 11 122222222221 112222222 3667899999985 44
Q ss_pred EEEEEcCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceee
Q 013625 226 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 305 (439)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (439)
++....... ..+...+.+.+...+. . .+.+ .++. ....+
T Consensus 258 ~VG~g~~~~------~~~~~~~~~~l~~~~~----~--------------~l~~-------------~~~~----~~~~~ 296 (450)
T PLN00093 258 AVGTGTVVN------KPAIKKYQRATRNRAK----D--------------KIAG-------------GKII----RVEAH 296 (450)
T ss_pred EEEEEEccC------CCChHHHHHHHHHHhh----h--------------hcCC-------------CeEE----EEEEE
Confidence 555532211 1233344444433211 0 0000 0011 11234
Q ss_pred ecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHH
Q 013625 306 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 385 (439)
Q Consensus 306 ~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~ 385 (439)
+++.....+|..+|++|||||||.++|++|+|+++||.+|..+|+.+.++++.+++......|+.|++.++......+..
T Consensus 297 ~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~ 376 (450)
T PLN00093 297 PIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKV 376 (450)
T ss_pred EcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555567888999999999999999999999999999999999999998876533334678999999999999999999
Q ss_pred HHHHHHhhcCCCC
Q 013625 386 LDGFQKAYSVDFG 398 (439)
Q Consensus 386 ~~~~~~~~~~~~~ 398 (439)
+..+.+++..+++
T Consensus 377 ~~~l~~~~~~~~~ 389 (450)
T PLN00093 377 LDILQKVFYRSNP 389 (450)
T ss_pred HHHHHHHHcCCcH
Confidence 9999999877444
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=2.9e-27 Score=232.80 Aligned_cols=323 Identities=18% Similarity=0.159 Sum_probs=212.3
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|+|++. ++.+ .|+.++++ ++|+++|+.+++... .+.++.++++++... .....
T Consensus 21 ~~G~~V~l~E~~~-~~~~----------~cg~~i~~---~~l~~l~i~~~~~~~---~~~~~~~~~~~~~~~-~~~~~-- 80 (388)
T TIGR02023 21 RAGIETILLERAL-SNIK----------PCGGAIPP---CLIEEFDIPDSLIDR---RVTQMRMISPSRVPI-KVTIP-- 80 (388)
T ss_pred hCCCcEEEEECCC-CCcC----------cCcCCcCH---hhhhhcCCchHHHhh---hcceeEEEcCCCcee-eeccC--
Confidence 4699999999983 3223 34778876 567888988877664 457777887765322 22111
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC------C-
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD------G- 156 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------g- 156 (439)
....+...++|..|++.|.+++.+.| ++++.+ +|+++.. +++.+.|++.+ |
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G-~~v~~~-~v~~v~~--------------------~~~~~~v~~~~~~~~~~~~ 138 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAG-AELIHG-LFLKLER--------------------DRDGVTLTYRTPKKGAGGE 138 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCC-CEEEee-EEEEEEE--------------------cCCeEEEEEEeccccCCCc
Confidence 11222235999999999999999887 999766 6999876 44567777653 2
Q ss_pred -cEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEee-----cCCceeEEE----EecCCceEEeecCCCceE
Q 013625 157 -TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-----KENYCAWQR----FLPAGPIALLPIGDNFSN 226 (439)
Q Consensus 157 -~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~g~~~~~p~~~~~~~ 226 (439)
.+++||+||||||.+|.||+.++...... ...++...+... ...+....+ +.++++.|++|.++ ..+
T Consensus 139 ~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~ 215 (388)
T TIGR02023 139 KGSVEADVVIGADGANSPVAKELGLPKNLP--RVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIA 215 (388)
T ss_pred ceEEEeCEEEECCCCCcHHHHHcCCCCCCc--EEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeE
Confidence 37999999999999999999998763211 112333333221 111222222 24677889999975 445
Q ss_pred EEEEcCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeee
Q 013625 227 IVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP 306 (439)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (439)
+....... ..+.+.+.+.+...+. .. ... .. .....+
T Consensus 216 vg~~~~~~------~~~~~~~~~~l~~~~~--~~------------------------------~~~-~~----~~~~~~ 252 (388)
T TIGR02023 216 VGTGTGTH------GFDAKQLQANLRRRAG--LD------------------------------GGQ-TI----RREAAP 252 (388)
T ss_pred EeEEECCC------CCCHHHHHHHHHHhhC--CC------------------------------Cce-Ee----eeeeEe
Confidence 54432211 1344555555554321 00 000 00 011123
Q ss_pred cccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHH
Q 013625 307 LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVL 386 (439)
Q Consensus 307 ~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~ 386 (439)
++....++|..++++|||||||.++|++|+|+++||++|..+|++|.+++..++ ...|+.|++.++......+..+
T Consensus 253 ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~----~~~L~~Y~~~~~~~~~~~~~~~ 328 (388)
T TIGR02023 253 IPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGD----ATDLRHYERKFMKLYGTTFRVL 328 (388)
T ss_pred ccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 333445778889999999999999999999999999999999999999987542 5789999999999998888888
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHhhccChhHHHHHHH
Q 013625 387 DGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIIS 423 (439)
Q Consensus 387 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l~~~~~~ 423 (439)
+.+..++...+ ..++.++..+ ..+.+.+.+..
T Consensus 329 ~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~ 360 (388)
T TIGR02023 329 RVLQMVYYRSD----RRREVFVEMC-RDKDVQRLTFD 360 (388)
T ss_pred HHHHHHHccCH----HHHHHHHHHh-ccccHHHhhHH
Confidence 88888875442 3444455444 33455555444
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.96 E-value=2.7e-26 Score=225.88 Aligned_cols=332 Identities=17% Similarity=0.142 Sum_probs=211.5
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||.+.. .+.| +.+++ .+.|+++|+.+++..+ .+.++.++.+++ ....+....
T Consensus 21 ~~G~~V~llE~~~~~-~~~c----------g~~i~---~~~l~~~g~~~~~~~~---~i~~~~~~~p~~-~~~~~~~~~- 81 (398)
T TIGR02028 21 SAGIQTFLLERKPDN-AKPC----------GGAIP---LCMVDEFALPRDIIDR---RVTKMKMISPSN-IAVDIGRTL- 81 (398)
T ss_pred hCCCcEEEEecCCCC-CCCc----------ccccc---HhhHhhccCchhHHHh---hhceeEEecCCc-eEEEeccCC-
Confidence 579999999998643 2334 77776 4678899988776663 345666666554 233332111
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe--CC-----C
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SD-----G 156 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~d-----g 156 (439)
....+.+.++|..|++.|.+++.+.| ++++.++ +++++.. +. .++.+.|++ .+ |
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G-~~v~~~~-~~~i~~~---------~~--------~~~~~~v~~~~~~~~~~~g 142 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAG-ATLINGL-VTKLSLP---------AD--------ADDPYTLHYISSDSGGPSG 142 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCC-cEEEcce-EEEEEec---------cC--------CCceEEEEEeeccccccCC
Confidence 12223346999999999999999987 9998885 7777530 00 123344443 32 3
Q ss_pred --cEEEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecC-----CceeEEE----EecCCceEEeecCCCce
Q 013625 157 --TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-----NYCAWQR----FLPAGPIALLPIGDNFS 225 (439)
Q Consensus 157 --~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~~~g~~~~~p~~~~~~ 225 (439)
.+++|++||||||.+|.||+.++.... .....+...+..+.. ......+ +.++++.|+||.++ ..
T Consensus 143 ~~~~i~a~~VIgADG~~S~v~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~-~~ 218 (398)
T TIGR02028 143 TRCTLEVDAVIGADGANSRVAKEIDAGDY---SYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD-HV 218 (398)
T ss_pred CccEEEeCEEEECCCcchHHHHHhCCCCc---ceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC-eE
Confidence 389999999999999999999986421 111222222332211 1222222 23678999999985 44
Q ss_pred EEEEEcCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceee
Q 013625 226 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 305 (439)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (439)
++....... ....+.+.+.+...+. .. +.+ .++.. ....
T Consensus 219 ~VG~g~~~~------~~~~~~~~~~l~~~~~----~~--------------~~~-------------~~~~~----~~~~ 257 (398)
T TIGR02028 219 AVGTGTVAA------KPEIKRLQSGIRARAA----GK--------------VAG-------------GRIIR----VEAH 257 (398)
T ss_pred EEEEEeCCC------CccHHHHHHhhhhhhh----hc--------------cCC-------------CcEEE----EEEE
Confidence 554432111 1122344444332110 00 000 00111 1123
Q ss_pred ecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHH
Q 013625 306 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 385 (439)
Q Consensus 306 ~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~ 385 (439)
+++....++|..+|++|||||||.++|++|+|+++||.+|..+|+.+.++++.+++......|+.|++.++......+..
T Consensus 258 ~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~ 337 (398)
T TIGR02028 258 PIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRV 337 (398)
T ss_pred eccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44434456788899999999999999999999999999999999999998876643334678999999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHhhccChhHHHHHHH
Q 013625 386 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIIS 423 (439)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l~~~~~~ 423 (439)
+..+.+++..++ ..++.++..+.. +.+.+.+..
T Consensus 338 ~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~ 370 (398)
T TIGR02028 338 LDLLQRVFYRSN----AGREAFVEMCAD-EHVQKRTFD 370 (398)
T ss_pred HHHHHHHHcCCc----HHHHHHHHHhcC-cchhhhhHH
Confidence 999999887642 344555555533 455555554
No 49
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.95 E-value=8.9e-27 Score=246.03 Aligned_cols=303 Identities=17% Similarity=0.150 Sum_probs=191.4
Q ss_pred CcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCC--CchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 6 HLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG--AWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 6 G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lG--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
|++|+|+||.+..+. .++|+.|+|++++.|+.++ +.+.+..... ....+.++.. +... . .
T Consensus 25 G~~V~vlEr~~~~~~----------~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~-g~~~-~-~---- 86 (765)
T PRK08255 25 AHEVTVVERNRPYDT----------FGWGVVFSDATLGNLRAADPVSAAAIGDAFN-HWDDIDVHFK-GRRI-R-S---- 86 (765)
T ss_pred CCeEEEEecCCCCcc----------cCcceEccHHHHHHHHhcCHHHHHHHHHhcc-cCCceEEEEC-CEEE-E-E----
Confidence 899999999998743 3459999999999999887 3344444322 3334444432 2211 1 0
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
.....+.++|.+|+++|.+++.+.+ ++|+++++|+++.. ....+|+
T Consensus 87 -~g~~~~~i~R~~L~~~L~e~a~~~G-V~i~~g~~v~~i~~--------------------------------~~~~~D~ 132 (765)
T PRK08255 87 -GGHGFAGIGRKRLLNILQARCEELG-VKLVFETEVPDDQA--------------------------------LAADADL 132 (765)
T ss_pred -CCeeEecCCHHHHHHHHHHHHHHcC-CEEEeCCccCchhh--------------------------------hhcCCCE
Confidence 1111145999999999999999987 99999999887743 0147999
Q ss_pred EEEecCCCchhhhhhCCCCCCC---cCCCeEEEEEEEeecCCceeEEEEecCCce--EEeecCCCceEEEEEcCccChhH
Q 013625 164 VVGADGGKSRVRELAGFKTTGW---SYSQNAIICTVEHNKENYCAWQRFLPAGPI--ALLPIGDNFSNIVWTMNPKDASD 238 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~p~~~~~~~~~~~~~~~~~~~ 238 (439)
||||||++|.||+.+.....+. .+....+...... .............+++ ..+|+.++...+++.+.......
T Consensus 133 VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~~~~~~~ 211 (765)
T PRK08255 133 VIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETPEEVWRA 211 (765)
T ss_pred EEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcCHHHHHh
Confidence 9999999999999874222111 1111111111100 0110001111233433 24677666554444443221111
Q ss_pred --hhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecc-cceee-ecccccccc
Q 013625 239 --CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVF-PLSLKHANN 314 (439)
Q Consensus 239 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 314 (439)
....+.+...+.+.+.|. +|.+... .+. .... ....| ++....+++
T Consensus 212 ~~~~~~~~~~~~~~l~~~f~-~~~~~~~--------li~---------------------~~~~~~~~~w~~~~~~~~~~ 261 (765)
T PRK08255 212 AGLDEMSQEESIAFCEKLFA-DYLDGHP--------LMS---------------------NASHLRGSAWINFPRVVCER 261 (765)
T ss_pred cCCccCCHHHHHHHHHHHhH-HhcCCCc--------ccc---------------------cccccccceeeecceeccCC
Confidence 122456667777777654 3422100 000 0000 00112 223334689
Q ss_pred cccCC----EEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013625 315 YVSKR----VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 390 (439)
Q Consensus 315 ~~~~r----vvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~ 390 (439)
|+.|| |+|+|||||+|+|+.|||+|+||+||..|+++|.... .+ .+.+|+.|++.|++++..++..++...
T Consensus 262 w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~---~~--~~~al~~ye~~R~~r~~~~~~~s~~~~ 336 (765)
T PRK08255 262 WVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP---GD--LPAALAAYEEERRVEVLRIQNAARNST 336 (765)
T ss_pred CccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc---cc--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 9999999999999999999999999999999998741 13 488999999999999999999999888
Q ss_pred HhhcCC
Q 013625 391 KAYSVD 396 (439)
Q Consensus 391 ~~~~~~ 396 (439)
.+|...
T Consensus 337 ~~~~~~ 342 (765)
T PRK08255 337 EWFENV 342 (765)
T ss_pred ceeeec
Confidence 887654
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=2e-25 Score=216.49 Aligned_cols=282 Identities=16% Similarity=0.110 Sum_probs=165.7
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC-CCC
Q 013625 7 LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD-VNK 85 (439)
Q Consensus 7 ~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 85 (439)
++|+||||++.....+ ...+||..|+|+++++|+++|++.............+... .+.... ...
T Consensus 24 ~~V~liE~~~~~~~~~------~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 89 (351)
T PRK11445 24 MKVIAIDKKHQCGTEG------FSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI--------DLANSLTRNY 89 (351)
T ss_pred CCEEEEECCCcccccc------ccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe--------cccccchhhc
Confidence 8999999998652111 2345699999999999999998632111000000011111 111000 001
Q ss_pred ccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe-CCCc--EEEec
Q 013625 86 EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAK 162 (439)
Q Consensus 86 ~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~--~~~ad 162 (439)
....+.++|..|+++|.+.+ +.+ ++++++++|++++. .++++.|++ ++|+ +++||
T Consensus 90 ~~~~~~i~R~~~~~~L~~~~-~~g-v~v~~~~~v~~i~~--------------------~~~~~~v~~~~~g~~~~i~a~ 147 (351)
T PRK11445 90 QRSYINIDRHKFDLWLKSLI-PAS-VEVYHNSLCRKIWR--------------------EDDGYHVIFRADGWEQHITAR 147 (351)
T ss_pred CCCcccccHHHHHHHHHHHH-hcC-CEEEcCCEEEEEEE--------------------cCCEEEEEEecCCcEEEEEeC
Confidence 11225699999999999865 444 99999999999987 446677776 5675 79999
Q ss_pred EEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCCc---eeEEEEecCCceEEeecCCCceEEEEEcCccChhHh
Q 013625 163 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY---CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDC 239 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 239 (439)
+||+|||.+|.+|+.++....... +.++...+....+.. ..+..-...++.|.+|.++.. .++...+...
T Consensus 148 ~vV~AdG~~S~vr~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~W~~p~~~~~-~~g~~~~~~~---- 220 (351)
T PRK11445 148 YLVGADGANSMVRRHLYPDHQIRK--YVAIQQWFAEKHPVPFYSCIFDNEITDCYSWSISKDGYF-IFGGAYPMKD---- 220 (351)
T ss_pred EEEECCCCCcHHhHHhcCCCchhh--EEEEEEEecCCCCCCCcceEEeccCCCceEEEeCCCCcE-Eecccccccc----
Confidence 999999999999999976532211 223333332222211 111111235677888875532 2222221111
Q ss_pred hCCCHHHHHHHHHHh---ccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccc--
Q 013625 240 KSMNEDDFVKILNHA---LDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANN-- 314 (439)
Q Consensus 240 ~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 314 (439)
. .+..+.+... +...+++ .++. ...+++.......
T Consensus 221 ---~-~~~~~~l~~~l~~~~~~~~~-----------~~~~-------------------------~~~~~~~~~~~~~~~ 260 (351)
T PRK11445 221 ---G-RERFETLKEKLSAFGFQFGK-----------PVKT-------------------------EACTVLRPSRWQDFV 260 (351)
T ss_pred ---h-HHHHHHHHHHHHhccccccc-----------cccc-------------------------ccccccCcccccccc
Confidence 1 1111222221 1101100 0000 0011111111122
Q ss_pred cccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhh
Q 013625 315 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 379 (439)
Q Consensus 315 ~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~ 379 (439)
+.++||+|||||||.++|++|+|+++|++||..|++.|.+.. ...++.|++.++...
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--------~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--------EKLNTAYWRKTRKLR 317 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--------cchHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999998642 345889999887654
No 51
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.94 E-value=4.8e-25 Score=209.06 Aligned_cols=266 Identities=18% Similarity=0.237 Sum_probs=176.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
..|++|+||||++.++. ..++..+.|++++.|...+.. . ........++...+.. ....
T Consensus 21 ~~g~~v~vie~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~--~----~~~~~~~~~~~~~~~~-~~~~---- 79 (295)
T TIGR02032 21 DKGLRVLLLEKKSFPRY----------KPCGGALSPRVLEELDLPLEL--I----VNLVRGARFFSPNGDS-VEIP---- 79 (295)
T ss_pred HCCCeEEEEeccCCCCc----------ccccCccCHhHHHHhcCCchh--h----hhheeeEEEEcCCCcE-EEec----
Confidence 46999999999998743 345889999998888776541 1 1123344555555432 2221
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC-cEEEec
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAK 162 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~ad 162 (439)
.....++.++|..|++.|.+.+.+.+ ++++++++|+++.. .++.+.+.+.++ .++++|
T Consensus 80 ~~~~~~~~i~r~~l~~~l~~~~~~~g-v~~~~~~~v~~~~~--------------------~~~~~~~~~~~~~~~~~a~ 138 (295)
T TIGR02032 80 IETELAYVIDRDAFDEQLAERAQEAG-AELRLGTTVLDVEI--------------------HDDRVVVIVRGGEGTVTAK 138 (295)
T ss_pred cCCCcEEEEEHHHHHHHHHHHHHHcC-CEEEeCcEEeeEEE--------------------eCCEEEEEEcCccEEEEeC
Confidence 12345678999999999999999886 99999999999977 345667766554 589999
Q ss_pred EEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecC--C-ceeEEEEe----cCCceEEeecCCCceEEEEEcCccC
Q 013625 163 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--N-YCAWQRFL----PAGPIALLPIGDNFSNIVWTMNPKD 235 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~----~~g~~~~~p~~~~~~~~~~~~~~~~ 235 (439)
+||+|||.+|.+|+.++......... ..+.+.+..+.. . +.....+. ++++.|++|+.++...+.+......
T Consensus 139 ~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~ 217 (295)
T TIGR02032 139 IVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE 217 (295)
T ss_pred EEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC
Confidence 99999999999999987654322222 344445544321 1 21122221 3578899999988777766654432
Q ss_pred hhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccc-cccc
Q 013625 236 ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANN 314 (439)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 314 (439)
...+.++..+.+...++ .+ +. .++.. ...+++... ...+
T Consensus 218 ----~~~~~~~~~~~~~~~~~-~l---------------~~----------------~~~~~----~~~~~~~~~~~~~~ 257 (295)
T TIGR02032 218 ----EGEDLKKYLKDFLARRP-EL---------------KD----------------AETVE----VIGAPIPIGRPDDK 257 (295)
T ss_pred ----CCCCHHHHHHHHHHhCc-cc---------------cc----------------CcEEe----eeceeeccCCCCCc
Confidence 12344445444444322 00 00 00011 111233332 3568
Q ss_pred cccCCEEEEcccccccCCcccccchhcHHHHHHHHHHH
Q 013625 315 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 352 (439)
Q Consensus 315 ~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L 352 (439)
|.++||+|+|||||.++|++|||+|+||+||..+|++|
T Consensus 258 ~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 258 TVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred cccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 88999999999999999999999999999999999875
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.92 E-value=2.4e-22 Score=197.95 Aligned_cols=311 Identities=16% Similarity=0.131 Sum_probs=200.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
++|++|+|+||++.+..+.| ++..+.+++++-|......+ + . ..+.+..++..........+
T Consensus 24 ~~G~~VlvlEk~~~~G~k~~---------~~~~~~~~~l~~l~~~~~~~-i-~---~~v~~~~~~~~~~~~~~~~~---- 85 (396)
T COG0644 24 KAGLDVLVLEKGSEPGAKPC---------CGGGLSPRALEELIPDFDEE-I-E---RKVTGARIYFPGEKVAIEVP---- 85 (396)
T ss_pred HcCCeEEEEecCCCCCCCcc---------ccceechhhHHHhCCCcchh-h-h---eeeeeeEEEecCCceEEecC----
Confidence 46899999999999976655 35788877776655443322 1 1 13455555555322222221
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEeCCCcEEEec
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAK 162 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~~~ad 162 (439)
...+|.++|..|+++|.+.+.+.| ++++.++++.++.. +++++ .....++.+++|+
T Consensus 86 --~~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~e~~a~ 142 (396)
T COG0644 86 --VGEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIR--------------------EDDGVVVGVRAGDDEVRAK 142 (396)
T ss_pred --CCceEEEEhHHhhHHHHHHHHHcC-CEEEeceEEEEEEE--------------------eCCcEEEEEEcCCEEEEcC
Confidence 155799999999999999999998 99999999999987 33344 4444555799999
Q ss_pred EEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCCceeEEE-----EecCCceEEeecCCCceEEEEEcCccChh
Q 013625 163 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQR-----FLPAGPIALLPIGDNFSNIVWTMNPKDAS 237 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 237 (439)
+||+|||.+|.+++.++...........+....+..+.+....... ..+.|+.|+||.+++..++........ .
T Consensus 143 ~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~-~ 221 (396)
T COG0644 143 VVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDD-P 221 (396)
T ss_pred EEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCC-c
Confidence 9999999999999999888222222223333333333222222222 346899999999998888887765544 1
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccccccc
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (439)
. ..... +..+.+..... ......+ .++.+.. ....|........++.
T Consensus 222 ~-~~~~~-~~l~~f~~~~~----------------~~~~~~~-------------~~~~~~~--~~~ip~~g~~~~~~~~ 268 (396)
T COG0644 222 S-LSPFL-ELLERFKEHPA----------------IRKLLLG-------------GKILEYA--AGGIPEGGPASRPLVG 268 (396)
T ss_pred C-CCchH-HHHHHHHhCcc----------------cchhccC-------------CceEEEe--eeecccCCcCCCcccc
Confidence 1 11111 33333333110 0011000 0011111 1112333222222778
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 394 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~ 394 (439)
++++||||||..++|++|+|+..||.+|..+|+.|..+...+ .+.|..|++.++..............+.+.
T Consensus 269 ~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T COG0644 269 DGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-----EEALAEYERLLRKSLAREDLKSLRLLKLLL 340 (396)
T ss_pred CCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 999999999999999999999999999999999999987643 456788998888776655555555444443
No 53
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.92 E-value=3.6e-23 Score=189.66 Aligned_cols=371 Identities=14% Similarity=0.131 Sum_probs=266.9
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
+.|.+|+||||.-.. .+..-|+.++|.+...|.+||+.|.+.....+...+..++.++....+.|+....
T Consensus 66 kdGRrVhVIERDl~E----------PdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f 135 (509)
T KOG1298|consen 66 KDGRRVHVIERDLSE----------PDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKDGKEVDLPYPLKNF 135 (509)
T ss_pred hCCcEEEEEeccccc----------chHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeCCceeeccCCCcCC
Confidence 569999999999876 3445599999999999999999998888666677888888877777788887777
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe--CCCc--EE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT--SL 159 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~--~~ 159 (439)
+.++-|..++...|.+-|++.+...+||++..| .|.++.+ +++....|++ +.|+ +.
T Consensus 136 ~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLle-------------------e~gvvkGV~yk~k~gee~~~ 195 (509)
T KOG1298|consen 136 PSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLE-------------------EEGVVKGVTYKNKEGEEVEA 195 (509)
T ss_pred CCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHh-------------------ccCeEEeEEEecCCCceEEE
Confidence 778889999999999999999999999998877 6777755 1223333444 4443 67
Q ss_pred EecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC--ceeEEEEecCCceEEeecCCCceEEEEEcCccChh
Q 013625 160 YAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDAS 237 (439)
Q Consensus 160 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 237 (439)
.|-|-|.|||..|.+||.+-..... .....++.......... ...+..+.+..++.++|+.....++..-++.+...
T Consensus 196 ~ApLTvVCDGcfSnlRrsL~~~~v~-~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~P 274 (509)
T KOG1298|consen 196 FAPLTVVCDGCFSNLRRSLCDPKVE-EVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLP 274 (509)
T ss_pred ecceEEEecchhHHHHHHhcCCccc-ccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCC
Confidence 7899999999999999999443221 12223333333333222 44455667888899999999888888887665432
Q ss_pred HhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccccccccc
Q 013625 238 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 317 (439)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (439)
. ...-++.+++++....+.++. +.+.|..+.. .+.....|-....+....+
T Consensus 275 s---i~~gem~~~mk~~v~PqiP~~----------lR~~F~~av~----------------~g~irsmpn~~mpa~~~~~ 325 (509)
T KOG1298|consen 275 S---IANGEMATYMKESVAPQIPEK----------LRESFLEAVD----------------EGNIRSMPNSSMPATLNDK 325 (509)
T ss_pred c---ccchhHHHHHHHhhCcCCCHH----------HHHHHHHHhh----------------ccchhcCccccCCCCcCCC
Confidence 2 223455566665433222111 1122211100 0000011222222333445
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcC-C
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV-D 396 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~-~ 396 (439)
.+++|+|||-..-+|.+|.||.-|+.|...|-+.|.....=.+.....+.++.|...|++...-+...+..+++++.. .
T Consensus 326 ~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~ 405 (509)
T KOG1298|consen 326 KGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVAST 405 (509)
T ss_pred CceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCc
Confidence 779999999999999999999999999999999998732111111225678899999999888888899999999987 6
Q ss_pred CChHHHHHHHHHHhhccChhHHHHHHHHHhcCCCCCCC
Q 013625 397 FGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLP 434 (439)
Q Consensus 397 ~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~~~p~~ 434 (439)
+.....+|+..|..+++-.....-.+..++|+.+-|+=
T Consensus 406 dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~ 443 (509)
T KOG1298|consen 406 DEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLS 443 (509)
T ss_pred hHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchH
Confidence 77778999999999999999999999999999987753
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.91 E-value=3e-22 Score=198.74 Aligned_cols=326 Identities=13% Similarity=0.111 Sum_probs=186.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCch-hhhhhhcCccceEEEEeCCCcceeEEeccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ-YVQQHRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
.+|++|+||||.+.+..+.| +|..+...+++.|. -++.. ...+... ....+.+.+.++.....+....
T Consensus 26 ~~G~~VlliEr~~~~g~k~~---------~gg~i~~~~~~~l~-~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~ 94 (429)
T PRK10015 26 RAGLDVLVIERGDSAGCKNM---------TGGRLYAHTLEAII-PGFAASAPVERKV-TREKISFLTEESAVTLDFHREQ 94 (429)
T ss_pred hCCCeEEEEecCCCCCcccc---------cCceeecccHHHHc-ccccccCCccccc-cceeEEEEeCCCceEeecccCC
Confidence 57999999999998854432 35555544444331 02221 1111111 1233445555544444443222
Q ss_pred CCC-ccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEe
Q 013625 83 VNK-EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYA 161 (439)
Q Consensus 83 ~~~-~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~a 161 (439)
... ...+|.+.|..|+++|.+.+.+.| ++++++++|+++.. +++.+.....++.++.|
T Consensus 95 ~~~~~~~~~~v~R~~fd~~L~~~a~~~G-v~i~~~~~V~~i~~--------------------~~~~v~~v~~~~~~i~A 153 (429)
T PRK10015 95 PDVPQHASYTVLRNRLDPWLMEQAEQAG-AQFIPGVRVDALVR--------------------EGNKVTGVQAGDDILEA 153 (429)
T ss_pred CCCCCcCceEeehhHHHHHHHHHHHHcC-CEEECCcEEEEEEE--------------------eCCEEEEEEeCCeEEEC
Confidence 111 224689999999999999999987 99999999999876 23445433345568999
Q ss_pred cEEEEecCCCchhhhhhCCCCCCCcCC-CeEEEEEEEeecCC-----------ceeEEEEe--cCC---ceEEeecCCCc
Q 013625 162 KLVVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKEN-----------YCAWQRFL--PAG---PIALLPIGDNF 224 (439)
Q Consensus 162 dlvVgADG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~--~~g---~~~~~p~~~~~ 224 (439)
|+||+|||.+|.+++.++......... ...+...+..+... ...|..+. ..+ ..|+++ ..+.
T Consensus 154 ~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~-~~d~ 232 (429)
T PRK10015 154 NVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYT-NKDS 232 (429)
T ss_pred CEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEE-cCCc
Confidence 999999999999999987643321111 12222233222110 11111111 111 223343 2344
Q ss_pred eEEEEEcCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeeccccee
Q 013625 225 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMV 304 (439)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (439)
.++...+....... ...++.++.+.+..+ + .++.++... ++.+. ....
T Consensus 233 v~vGv~~~~~~~~~-~~~~~~~~l~~~~~~-p----------------~~~~~~~~~------------~~~e~--~~~~ 280 (429)
T PRK10015 233 ISLGLVCGLGDIAH-AQKSVPQMLEDFKQH-P----------------AIRPLISGG------------KLLEY--SAHM 280 (429)
T ss_pred EEEEEEEehhhhcc-CCCCHHHHHHHHhhC-h----------------HHHHHhcCC------------EEEEE--eeEE
Confidence 45544332211111 123455555555421 0 111111000 00111 1112
Q ss_pred eecccc-cccccccCCEEEEcccccccC--CcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchh-hH
Q 013625 305 FPLSLK-HANNYVSKRVVLIGDAAHTVH--PLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA-NI 380 (439)
Q Consensus 305 ~~~~~~-~~~~~~~~rvvLvGDAAh~~~--P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~-~~ 380 (439)
.|.... ..++.+.++|+||||||+.++ |++|+|+++||.++..+|+++.++++.++ . +...|+.|++..+.. +.
T Consensus 281 ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d-~-s~~~l~~Y~~~~~~~~~~ 358 (429)
T PRK10015 281 VPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERAD-F-SASSLAQYKRELEQSCVM 358 (429)
T ss_pred cccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCC-C-ccccHHHHHHHHHHCHHH
Confidence 233321 246777899999999999998 46999999999999999999999987553 2 356789999988876 33
Q ss_pred HHHHHHHHHHHhhcCC
Q 013625 381 VMMAVLDGFQKAYSVD 396 (439)
Q Consensus 381 ~~~~~~~~~~~~~~~~ 396 (439)
+-+...+.+..+++..
T Consensus 359 ~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 359 RDMQHFRKIPALMENP 374 (429)
T ss_pred HHHHHHhChHhhhcCc
Confidence 4355566666666543
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.89 E-value=1.2e-20 Score=187.61 Aligned_cols=319 Identities=14% Similarity=0.108 Sum_probs=184.6
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhh-hh---cCccceEEEEeCCCcceeEEe
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ-HR---HAYFDKMQVWDYTGLGYTKYN 79 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~ 79 (439)
.+|++|+||||.+.++.+.| +|..+.+.+++.+ .+.+.. .. ......+.+.+.++.....+.
T Consensus 26 ~~G~~V~llEr~~~~g~k~~---------~gg~l~~~~~e~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (428)
T PRK10157 26 REGAQVLVIERGNSAGAKNV---------TGGRLYAHSLEHI-----IPGFADSAPVERLITHEKLAFMTEKSAMTMDYC 91 (428)
T ss_pred hCCCeEEEEEcCCCCCCccc---------ccceechhhHHHH-----hhhhhhcCcccceeeeeeEEEEcCCCceeeccc
Confidence 57999999999998865433 3445554444322 111111 00 001123445555554443333
Q ss_pred ccC-CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcE
Q 013625 80 ARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 158 (439)
Q Consensus 80 ~~~-~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~ 158 (439)
... ......+|.+.|..|+++|.+.+.+.| ++|+++++|++++. +++.+.+...+|.+
T Consensus 92 ~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~G-v~i~~~~~V~~i~~--------------------~~g~v~~v~~~g~~ 150 (428)
T PRK10157 92 NGDETSPSQRSYSVLRSKFDAWLMEQAEEAG-AQLITGIRVDNLVQ--------------------RDGKVVGVEADGDV 150 (428)
T ss_pred cccccCCCCCceeeEHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE--------------------eCCEEEEEEcCCcE
Confidence 211 122345688999999999999999987 99999999999976 33445444467789
Q ss_pred EEecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEE--EEEeecC-----------CceeEEEEe-c-CC---ceEEeec
Q 013625 159 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIIC--TVEHNKE-----------NYCAWQRFL-P-AG---PIALLPI 220 (439)
Q Consensus 159 ~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~-~-~g---~~~~~p~ 220 (439)
+.||+||+|||.+|.+++.++..... .....++.. .+..+.. ....+.... + .| ..|+++
T Consensus 151 i~A~~VI~A~G~~s~l~~~lgl~~~~-~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~~~- 228 (428)
T PRK10157 151 IEAKTVILADGVNSILAEKLGMAKRV-KPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYT- 228 (428)
T ss_pred EECCEEEEEeCCCHHHHHHcCCCCCC-CCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCceeEEE-
Confidence 99999999999999999999876432 222333322 2222110 111222111 1 11 224444
Q ss_pred CCCceEEEEEcCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecc
Q 013625 221 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS 300 (439)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (439)
..+..++.+.+...... .......++.+.+... + .++..+... +..+
T Consensus 229 ~~~~~svG~~~~~~~~~-~~~~~~~~~l~~~~~~-p----------------~v~~~~~~~---------------~~~~ 275 (428)
T PRK10157 229 NENTLSLGLVCGLHHLH-DAKKSVPQMLEDFKQH-P----------------AVAPLIAGG---------------KLVE 275 (428)
T ss_pred cCCeEEEEEEEehHHhc-ccCCCHHHHHHHHHhC-c----------------hHHHHhCCC---------------eEHH
Confidence 33444555544322111 1123445555554321 0 011100000 0000
Q ss_pred c-ceeeeccc-ccccccccCCEEEEcccccccCC--cccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhc
Q 013625 301 E-RMVFPLSL-KHANNYVSKRVVLIGDAAHTVHP--LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 376 (439)
Q Consensus 301 ~-~~~~~~~~-~~~~~~~~~rvvLvGDAAh~~~P--~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~ 376 (439)
. ....|... ...++...++|++|||||..++| ++|+|+++||.++..+|+++.++++.++ .+...|..|++..+
T Consensus 276 ~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~--~s~~~l~~Y~~~l~ 353 (428)
T PRK10157 276 YSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDD--FSKQKLAEYRQHLE 353 (428)
T ss_pred HHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCC--cchhhHHHHHHHHH
Confidence 0 00122221 12456678999999999999998 6999999999999999999999988653 24678999999777
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 013625 377 PANIVMMAVLDGFQKAYS 394 (439)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~ 394 (439)
..+-+-+...+.+..+++
T Consensus 354 ~~~~~~l~~~~~~~~~~~ 371 (428)
T PRK10157 354 SGPLRDMRMYQKLPAFLD 371 (428)
T ss_pred HhHHHHHHHHhccHHHhc
Confidence 765344444444455554
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.85 E-value=6.5e-19 Score=173.74 Aligned_cols=229 Identities=18% Similarity=0.172 Sum_probs=145.5
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
..++|..|++.|.+.+.+.+ ++++ ..+|++++. +.++.+.|++++|.+++|++||+|||
T Consensus 80 ~~i~~~~l~~~l~~~~~~~g-v~~~-~~~v~~i~~-------------------~~~~~~~v~~~~g~~~~a~~VI~A~G 138 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGG-VLWL-ERKAIHAEA-------------------DGVALSTVYCAGGQRIQARLVIDARG 138 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcC-cEEE-ccEEEEEEe-------------------cCCceeEEEeCCCCEEEeCEEEECCC
Confidence 45999999999999999886 8886 558888876 12466788888999999999999999
Q ss_pred CCchhhhhhCCCCCCCcCCCeEEEEEEEeec-C---CceeEEEEe--c--------CC--ceEEeecCCCceEEEEEcCc
Q 013625 170 GKSRVRELAGFKTTGWSYSQNAIICTVEHNK-E---NYCAWQRFL--P--------AG--PIALLPIGDNFSNIVWTMNP 233 (439)
Q Consensus 170 ~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~--~--------~g--~~~~~p~~~~~~~~~~~~~~ 233 (439)
.+|.+++........ ........+.... + ....+..+. + .+ ++|++|.+++...+......
T Consensus 139 ~~s~~~~~~~~~~~~---~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~ 215 (388)
T TIGR01790 139 FGPLVQYVRFPLNVG---FQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLA 215 (388)
T ss_pred CchhcccccCCCCce---EEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEecccc
Confidence 999776443211111 0122222333321 1 111122211 1 12 67788988766544321111
Q ss_pred cChhHhhCCCHHHHHHHHHHhccC-CCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccc
Q 013625 234 KDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHA 312 (439)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (439)
.....+.+.+.+.+.+.+.. +|. . ..+. ......+|+....
T Consensus 216 ----~~~~~~~~~~~~~l~~~~~~~g~~------------------------------~-~~i~--~~~~~~iP~~~~~- 257 (388)
T TIGR01790 216 ----DRPALPRDRLRQRILARLNAQGWQ------------------------------I-KTIE--EEEWGALPVGLPG- 257 (388)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHcCCe------------------------------e-eEEE--eeeeEEEecccCC-
Confidence 11224556666666553320 110 0 0011 1122335654432
Q ss_pred cccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHH
Q 013625 313 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 385 (439)
Q Consensus 313 ~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~ 385 (439)
++.++|+++||||||.++|.+|+|++.|+++|..||+.|.++++.+ ...+++.|++.++++..+....
T Consensus 258 -~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 325 (388)
T TIGR01790 258 -PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS----SELATAAWDGLWPTERRRQRYF 325 (388)
T ss_pred -CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC----HHHHHHHHHHhchHHHHHHHHH
Confidence 2367999999999999999999999999999999999999987644 2688999998877776663333
No 57
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.85 E-value=1.8e-19 Score=179.40 Aligned_cols=315 Identities=16% Similarity=0.202 Sum_probs=193.2
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchh--hhhhhcCccceEEEEe--CCCccee-EEe--
Q 013625 7 LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--VQQHRHAYFDKMQVWD--YTGLGYT-KYN-- 79 (439)
Q Consensus 7 ~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~--l~~~~~~~~~~~~~~~--~~~~~~~-~~~-- 79 (439)
++|+|||+...++ .+-|++..|....+++.||+.+. +.+...+.-.++.+.+ ..+.... .|.
T Consensus 26 ~~v~lie~~~~~~-----------~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w~~~~~~~~~~f~~~ 94 (454)
T PF04820_consen 26 LSVTLIESPDIPR-----------IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNWGERGESYFHPFGSY 94 (454)
T ss_dssp SEEEEEE-SSS--------------SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESSSSCCSEEEEESS--
T ss_pred cEEEEEecCCCCC-----------CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeecCCCCCceEeecccc
Confidence 8999999999873 34489999999999999999887 6555443444555533 2111110 000
Q ss_pred -----------------------------------------c--cC-CCCccceeeeehHHHHHHHHHHhhcCCCcEEEc
Q 013625 80 -----------------------------------------A--RD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIY 115 (439)
Q Consensus 80 -----------------------------------------~--~~-~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~ 115 (439)
. .. .....++|.++|..|++.|.+.+.+.| |+++.
T Consensus 95 ~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L~~~A~~~G-v~~~~ 173 (454)
T PF04820_consen 95 GPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFLRRHAEERG-VEVIE 173 (454)
T ss_dssp -TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHHHHHHHHTT--EEEE
T ss_pred CCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHHHHHHhcCC-CEEEe
Confidence 0 00 112357899999999999999999997 99998
Q ss_pred CCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchhhhhh-CCCCCCCcC---CCeE
Q 013625 116 PSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-GFKTTGWSY---SQNA 191 (439)
Q Consensus 116 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~~~---~~~~ 191 (439)
+ +|+++.. . .++....|++++|.+++||+||+|+|.+|.+.+++ +........ ...+
T Consensus 174 g-~V~~v~~---------~---------~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d~a 234 (454)
T PF04820_consen 174 G-TVVDVEL---------D---------EDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPNDRA 234 (454)
T ss_dssp T--EEEEEE-------------------TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEEEE
T ss_pred C-EEEEEEE---------c---------CCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCccccccccccEE
Confidence 8 5888876 1 12344679999999999999999999999998774 322222111 1234
Q ss_pred EEEEEEeec-CCceeEEEEecCCceEEeecCCCceEEEEEcCccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCc
Q 013625 192 IICTVEHNK-ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS 270 (439)
Q Consensus 192 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 270 (439)
+...++... ..........+.||+|.+|+.++..+ .++...... ++++....+.+.+...-
T Consensus 235 v~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~~~A~~~l~~~l~~~~----------- 296 (454)
T PF04820_consen 235 VAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SDDEAEAELLAYLGGSP----------- 296 (454)
T ss_dssp EEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HHHHHHHHHHHHHTCHC-----------
T ss_pred EEEecCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CHHHHHHHHHHhcchhh-----------
Confidence 444444333 22333455568999999999987666 444433322 33444444544332000
Q ss_pred ccchhccccCccccccccccCCcceeeecccceeeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHH
Q 013625 271 VDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSR 350 (439)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~ 350 (439)
. . .. ...++......+...+|+++|||||+.++|+.+.|+.+++..+..|++
T Consensus 297 -----~--------------~--------~~-~~i~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~ 348 (454)
T PF04820_consen 297 -----E--------------A--------EP-RHIRFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAE 348 (454)
T ss_dssp -----T--------------T--------SC-EEEE-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHH
T ss_pred -----h--------------c--------ch-hhhcccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHH
Confidence 0 0 00 112223333455667889999999999999999999999997777777
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCC-CChHHHHH
Q 013625 351 IIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD-FGPLNILR 404 (439)
Q Consensus 351 ~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r 404 (439)
.|... .. .+.+++.|++..+.....+.++....+...... .++.+..|
T Consensus 349 ~l~~~----~~--~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~~~~ 397 (454)
T PF04820_consen 349 ALPDD----DF--SPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWRARR 397 (454)
T ss_dssp THHCT----TC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHHHHC
T ss_pred hcccC----CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHhcc
Confidence 77653 21 277899999999999999988887777764443 35544433
No 58
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.85 E-value=3e-20 Score=167.52 Aligned_cols=241 Identities=20% Similarity=0.234 Sum_probs=169.0
Q ss_pred ecEEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeec-CC-ceeEEEEecCCceEEeecCCCceEEEEEcCccChhH
Q 013625 161 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-EN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASD 238 (439)
Q Consensus 161 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 238 (439)
|.++|.|||..|.+|+.+. . ........++...+.... +. ...+..+.+.+++.+++++.+..++..-++.+....
T Consensus 2 A~LtivaDG~~S~fRk~l~-~-~~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~ 79 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELS-D-NKPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPS 79 (276)
T ss_pred CCEEEEecCCchHHHHhhc-C-CCCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCC
Confidence 7899999999999999997 2 222233334444443332 22 444556678899999999999999988887663222
Q ss_pred hhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccccccccccC
Q 013625 239 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 318 (439)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (439)
....++.+++.+......+ +.+...|... +.+ +.....|............
T Consensus 80 ---~~~g~l~~yl~~~v~P~LP----------~~lr~~f~~a--------------l~~--~rirsMPn~~lp~~~~~~~ 130 (276)
T PF08491_consen 80 ---VSNGELKEYLREVVAPQLP----------EELRPSFEKA--------------LED--GRIRSMPNSFLPASPNWKP 130 (276)
T ss_pred ---ccchHHHHHHHHHHHhhch----------HHHHHHHHHH--------------hcc--CCcceecccccCCCCCCCC
Confidence 2233455555442221111 1111111100 000 0111233333333344457
Q ss_pred CEEEEcccccccCCcccccchhcHHHHHHHHHHHHHh--hhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 013625 319 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG--IAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD 396 (439)
Q Consensus 319 rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~--~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~~~~~~~ 396 (439)
+++++|||++..+|.+|+||+.|+.|+..|++.|... +.+.+ ...++++.|+.+|++....+...+..++.+|..+
T Consensus 131 G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~--~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~ 208 (276)
T PF08491_consen 131 GVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTK--AVLEALKKFHWKRKPLSSVINILAQALYSLFAAD 208 (276)
T ss_pred CEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHH--HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999986 22211 2367899999999999998888999999999999
Q ss_pred CChHHHHHHHHHHhhccChhHHHHHHHHHhcCCCCCCC
Q 013625 397 FGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLP 434 (439)
Q Consensus 397 ~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~g~~~~p~~ 434 (439)
++.+..+|+..|+.++.-+.....-+..++|+..-|.+
T Consensus 209 ~~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~ 246 (276)
T PF08491_consen 209 DDYLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLV 246 (276)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHH
Confidence 99999999999999999889999999999999877754
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.77 E-value=6.5e-16 Score=155.39 Aligned_cols=290 Identities=17% Similarity=0.160 Sum_probs=177.3
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|||+.... .+..+++ ...++.+|+.+.+.. .+....++.+++.... .
T Consensus 129 k~Gl~V~LIe~~~p~-------------~~n~GvW---~~~l~~lgl~~~i~~----~w~~~~v~~~~~~~~~-~----- 182 (529)
T PLN02697 129 KLGLNVGLIGPDLPF-------------TNNYGVW---EDEFKDLGLEDCIEH----VWRDTIVYLDDDKPIM-I----- 182 (529)
T ss_pred hCCCcEEEecCcccC-------------CCccccc---hhHHHhcCcHHHHHh----hcCCcEEEecCCceee-c-----
Confidence 469999999985332 1123444 346788887655432 2233444444432211 1
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeE-EEeCCCcEEEec
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAK 162 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~dg~~~~ad 162 (439)
...+ ..++|..|++.|.+.+.+.| +++ .+++|+++.. .++.+. +.+.+|.++.|+
T Consensus 183 -~~~Y-g~V~R~~L~~~Ll~~a~~~G-V~~-~~~~V~~I~~--------------------~~~~~~vv~~~dG~~i~A~ 238 (529)
T PLN02697 183 -GRAY-GRVSRTLLHEELLRRCVESG-VSY-LSSKVDRITE--------------------ASDGLRLVACEDGRVIPCR 238 (529)
T ss_pred -cCcc-cEEcHHHHHHHHHHHHHhcC-CEE-EeeEEEEEEE--------------------cCCcEEEEEEcCCcEEECC
Confidence 1222 25999999999999998876 888 6789999976 223333 466788999999
Q ss_pred EEEEecCCCchhhhhhCCCCCCC-cCCCeEEEEEEEeecC-C--c-eeEEEEe-------------cCCceEEeecCCCc
Q 013625 163 LVVGADGGKSRVRELAGFKTTGW-SYSQNAIICTVEHNKE-N--Y-CAWQRFL-------------PAGPIALLPIGDNF 224 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~-~--~-~~~~~~~-------------~~g~~~~~p~~~~~ 224 (439)
+||+|||.+|. +.++...... ...+.++...++...+ . + ..++-|. ..+++|.+|++++.
T Consensus 239 lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~ 316 (529)
T PLN02697 239 LATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTR 316 (529)
T ss_pred EEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCe
Confidence 99999999993 3333221111 2233444444444321 1 1 1111111 11457788988877
Q ss_pred eEE-EEEc-CccChhHhhCCCHHHHHHHHHHhccC-CCCCCCCCCCCCcccchhccccCccccccccccCCcceeeeccc
Q 013625 225 SNI-VWTM-NPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE 301 (439)
Q Consensus 225 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (439)
..+ .-++ ..+ ..+.+.+.+.+...+.. ++.. .++ ...+
T Consensus 317 ~~VE~T~l~~~~------~l~~~~l~~~L~~~l~~~Gi~~-------------------------------~~i--~~~E 357 (529)
T PLN02697 317 VFFEETCLASKD------AMPFDLLKKRLMSRLETMGIRI-------------------------------LKT--YEEE 357 (529)
T ss_pred EEEEEeeeccCC------CCCHHHHHHHHHHHHHhCCCCc-------------------------------ceE--EEEE
Confidence 666 2222 211 23456666666664431 1100 001 1122
Q ss_pred ceeeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCC-------CChHHHHHHHHHh
Q 013625 302 RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD-------IGEASLLKKYEAE 374 (439)
Q Consensus 302 ~~~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~-------~~~~~~l~~Ye~~ 374 (439)
....|+.. ..+.. .++++++||||+.++|.+|.|+..++.+|..+|+.+.++++.+++ .....+++.|++.
T Consensus 358 ~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~l 435 (529)
T PLN02697 358 WSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTL 435 (529)
T ss_pred eeeecCCC-CCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHh
Confidence 22356543 33333 678999999999999999999999999999999999999986530 1347789999999
Q ss_pred hchhhHHHHHHH
Q 013625 375 RKPANIVMMAVL 386 (439)
Q Consensus 375 r~~~~~~~~~~~ 386 (439)
+.....+...+-
T Consensus 436 w~~e~~r~~~~~ 447 (529)
T PLN02697 436 WPQERKRQRAFF 447 (529)
T ss_pred ChHHHHHHHHHH
Confidence 888766555543
No 60
>PLN02463 lycopene beta cyclase
Probab=99.75 E-value=1.3e-15 Score=150.92 Aligned_cols=264 Identities=19% Similarity=0.166 Sum_probs=158.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+|||+.+... .+++.+++ ...++.+|+.+.+... . ....++..++... .
T Consensus 49 ~~Gl~V~liE~~~~~~-----------~p~~~g~w---~~~l~~lgl~~~l~~~-w---~~~~v~~~~~~~~-~------ 103 (447)
T PLN02463 49 EAGLSVCCIDPSPLSI-----------WPNNYGVW---VDEFEALGLLDCLDTT-W---PGAVVYIDDGKKK-D------ 103 (447)
T ss_pred HCCCeEEEeccCccch-----------hccccchH---HHHHHHCCcHHHHHhh-C---CCcEEEEeCCCCc-c------
Confidence 4699999999977531 12233332 4568889987766442 1 2222222222111 0
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
...++ ..++|..|++.|.+.+.+.+ ++++ ..+|++++. .++.+.|++++|.+++||+
T Consensus 104 ~~~~y-~~V~R~~L~~~Ll~~~~~~G-V~~~-~~~V~~I~~--------------------~~~~~~V~~~dG~~i~A~l 160 (447)
T PLN02463 104 LDRPY-GRVNRKKLKSKMLERCIANG-VQFH-QAKVKKVVH--------------------EESKSLVVCDDGVKIQASL 160 (447)
T ss_pred ccCcc-eeEEHHHHHHHHHHHHhhcC-CEEE-eeEEEEEEE--------------------cCCeEEEEECCCCEEEcCE
Confidence 11223 35899999999999998876 8986 469999987 4566889999999999999
Q ss_pred EEEecCCCchhhhhhCCCCCCCcCC-CeEEEEEEEeecCC---cee-EEEE-----e-----------cCCceEEeecCC
Q 013625 164 VVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKEN---YCA-WQRF-----L-----------PAGPIALLPIGD 222 (439)
Q Consensus 164 vVgADG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~~---~~~-~~~~-----~-----------~~g~~~~~p~~~ 222 (439)
||+|||.+|++++.-. +.... +.++...++.+.+. +.. ++.| . ..++++.+|.++
T Consensus 161 VI~AdG~~s~l~~~~~----~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~ 236 (447)
T PLN02463 161 VLDATGFSRCLVQYDK----PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSS 236 (447)
T ss_pred EEECcCCCcCccCCCC----CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCC
Confidence 9999999999875321 11112 22333333322111 110 0000 0 024667888888
Q ss_pred CceEEEEEc--CccChhHhhCCCHHHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeec-
Q 013625 223 NFSNIVWTM--NPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA- 299 (439)
Q Consensus 223 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 299 (439)
+...+-... ... ..+.+.+.+.+.+.+. ..+-. ..++.
T Consensus 237 ~~~~vEeT~l~s~~------~~~~~~lk~~L~~~l~-~~Gi~--------------------------------~~~i~~ 277 (447)
T PLN02463 237 NRIFLEETSLVARP------GLPMDDIQERMVARLR-HLGIK--------------------------------VKSVEE 277 (447)
T ss_pred CeEEEEeeeeecCC------CCCHHHHHHHHHHHHH-HCCCC--------------------------------cceeee
Confidence 764432221 111 1344566666665432 11100 00111
Q ss_pred ccceeeecccccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCC
Q 013625 300 SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA 360 (439)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~ 360 (439)
.+....|+... .+ ...+|++++||||..++|.+|.|+..++..|..+|+++.++++.+.
T Consensus 278 ~E~~~IPmg~~-~~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~ 336 (447)
T PLN02463 278 DEKCVIPMGGP-LP-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSR 336 (447)
T ss_pred eeeeEeeCCCC-CC-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11112454322 22 2357899999999999999999999999999999999999998653
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.66 E-value=1.5e-14 Score=140.87 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=132.7
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
..|+|.+|.+.|.+.+. ..|+++.+|+++.. +++++ .||.+++||+||+|||
T Consensus 84 ~~I~r~~f~~~l~~~l~----~~i~~~~~V~~v~~----------------------~~v~l--~dg~~~~A~~VI~A~G 135 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFP----EGVILGRKAVGLDA----------------------DGVDL--APGTRINARSVIDCRG 135 (370)
T ss_pred eEEEHHHHHHHHHHhhc----ccEEecCEEEEEeC----------------------CEEEE--CCCCEEEeeEEEECCC
Confidence 57999999999988774 23777999999843 44555 7899999999999999
Q ss_pred CCchhhhhhCCCCCCCcCCCeEEEEEEEeecCC--c-eeEEEEe---cCC-ceE-EeecCCCceEEEEEcCccChhHhhC
Q 013625 170 GKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--Y-CAWQRFL---PAG-PIA-LLPIGDNFSNIVWTMNPKDASDCKS 241 (439)
Q Consensus 170 ~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~---~~g-~~~-~~p~~~~~~~~~~~~~~~~~~~~~~ 241 (439)
.+|.-.... ..+.++...++...+. + ...+.+- .++ .+. .+|++++...+-..... ....
T Consensus 136 ~~s~~~~~~--------~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s----~~~~ 203 (370)
T TIGR01789 136 FKPSAHLKG--------GFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYA----DDPL 203 (370)
T ss_pred CCCCccccc--------eeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEecc----CCCC
Confidence 998622111 1123333333333222 1 1121111 222 233 36887776544222111 1123
Q ss_pred CCHHHHHHHHHHhccC-CCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeecccc-c-ccccc-c
Q 013625 242 MNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-H-ANNYV-S 317 (439)
Q Consensus 242 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~ 317 (439)
++.+.+.+.+...... +|.. .++... +..++|+... . ...|. +
T Consensus 204 l~~~~l~~~l~~~~~~~g~~~-------------------------------~~i~~~--e~g~iPm~~~~~~~~~~~~~ 250 (370)
T TIGR01789 204 LDRNALSQRIDQYARANGWQN-------------------------------GTPVRH--EQGVLPVLLGGDFSAYQDEV 250 (370)
T ss_pred CCHHHHHHHHHHHHHHhCCCc-------------------------------eEEEEe--eeeEEeeecCCCcccccccC
Confidence 4566666666553220 1100 011111 2235676442 1 22233 4
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 390 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~~~~~~ 390 (439)
++|+++|||||.++|.+|+|++.+++||..|++++... +.++ ..++..|...|.++.+...-.-+.+-
T Consensus 251 ~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll 318 (370)
T TIGR01789 251 RIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS---SEQL--AAFIDSRARRHWSKTGYYRLLNRMLF 318 (370)
T ss_pred CceeeeecccccccccccccHHHHHHHHHHHHhccCcC---ccch--hhhhhHHHHHHHHHhHHHHHHHHHHh
Confidence 56999999999999999999999999999999988511 1122 45678899888777765544444443
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.52 E-value=1e-11 Score=121.48 Aligned_cols=259 Identities=21% Similarity=0.231 Sum_probs=157.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccC
Q 013625 3 LTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 3 ~~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
...|.+|+|||+++..... .+. .-+... ..++..+++... .+.+..++..++.....
T Consensus 21 ~~~g~~Vllid~~~~~~~~-------~~~--tW~~~~------~~~~~~~~~v~~---~w~~~~v~~~~~~~~~~----- 77 (374)
T PF05834_consen 21 ARPGLSVLLIDPKPKPPWP-------NDR--TWCFWE------KDLGPLDSLVSH---RWSGWRVYFPDGSRILI----- 77 (374)
T ss_pred cCCCCEEEEEcCCcccccc-------CCc--cccccc------ccccchHHHHhe---ecCceEEEeCCCceEEc-----
Confidence 4579999999998875211 111 111111 111113344333 34566666655543221
Q ss_pred CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEec
Q 013625 83 VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK 162 (439)
Q Consensus 83 ~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ad 162 (439)
. .....|+|..|++.|.+.+. .+ ..++.+.+|++|+. .+..+.|.+.||.+++|+
T Consensus 78 --~-~~Y~~i~~~~f~~~l~~~~~-~~-~~~~~~~~V~~i~~--------------------~~~~~~v~~~~g~~i~a~ 132 (374)
T PF05834_consen 78 --D-YPYCMIDRADFYEFLLERAA-AG-GVIRLNARVTSIEE--------------------TGDGVLVVLADGRTIRAR 132 (374)
T ss_pred --c-cceEEEEHHHHHHHHHHHhh-hC-CeEEEccEEEEEEe--------------------cCceEEEEECCCCEEEee
Confidence 1 11247999999999999999 44 46788899999987 456788999999999999
Q ss_pred EEEEecCCCchhhhhhCCCCCCCcCCCeEEEEEEEeecC---C-ceeEEEEe--c----CCceEEeecCCCceEEEEEcC
Q 013625 163 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE---N-YCAWQRFL--P----AGPIALLPIGDNFSNIVWTMN 232 (439)
Q Consensus 163 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~--~----~g~~~~~p~~~~~~~~~~~~~ 232 (439)
+||+|+|..|...+..+ .+.++...++.+.+ . ....+.|. . ..+++++|++.+...+-....
T Consensus 133 ~VvDa~g~~~~~~~~~~--------~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~f 204 (374)
T PF05834_consen 133 VVVDARGPSSPKARPLG--------LQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSF 204 (374)
T ss_pred EEEECCCcccccccccc--------cceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEE
Confidence 99999998777222221 23444445554433 1 22222221 1 244667799887765532222
Q ss_pred ccChhHhhCCCHHHHHHHHHHhccC-CCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeeeccccc
Q 013625 233 PKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKH 311 (439)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (439)
.... ..+.+.+.+.+...+.. ++.. .++ ...+....|+....
T Consensus 205 s~~~----~~~~~~~~~~l~~~l~~~g~~~-------------------------------~~i--~~~E~G~IPm~~~~ 247 (374)
T PF05834_consen 205 SPRP----ALPEEELKARLRRYLERLGIDD-------------------------------YEI--LEEERGVIPMTTGG 247 (374)
T ss_pred cCCC----CCCHHHHHHHHHHHHHHcCCCc-------------------------------eeE--EEeecceeecccCC
Confidence 2211 24556666666664431 1100 001 11223346774444
Q ss_pred ccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHH
Q 013625 312 ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 354 (439)
Q Consensus 312 ~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 354 (439)
..+...++++.+|+|++.+.|.+|.++..++..|..+|+.|.+
T Consensus 248 ~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 248 FPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred CccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 3444457799999999999999999999999999988888886
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.17 E-value=1.6e-05 Score=73.48 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=80.2
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
.+|++|+||||.+.+....+ ..........+.+.+..+|+++|+. +.. . .+
T Consensus 46 ~~G~~V~liEk~~~~Ggg~~---~gg~~~~~~~v~~~~~~~l~~~gv~----------~~~---~-~~------------ 96 (257)
T PRK04176 46 KAGLKVAVFERKLSFGGGMW---GGGMLFNKIVVQEEADEILDEFGIR----------YKE---V-ED------------ 96 (257)
T ss_pred hCCCeEEEEecCCCCCCccc---cCccccccccchHHHHHHHHHCCCC----------cee---e-cC------------
Confidence 47999999999987632110 0000001134555667777777652 110 0 00
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---------C
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---------S 154 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---------~ 154 (439)
..|.+++..|...|.+.+.+.+ ++|+++++|+++..+++. .-.++.+.. .
T Consensus 97 ----g~~~vd~~~l~~~L~~~A~~~G-v~I~~~t~V~dl~~~~~g----------------~V~Gvv~~~~~v~~~g~~~ 155 (257)
T PRK04176 97 ----GLYVADSVEAAAKLAAAAIDAG-AKIFNGVSVEDVILREDP----------------RVAGVVINWTPVEMAGLHV 155 (257)
T ss_pred ----cceeccHHHHHHHHHHHHHHcC-CEEEcCceeceeeEeCCC----------------cEEEEEEccccccccCCCC
Confidence 1256789999999999999987 999999999999761100 001222211 1
Q ss_pred CCcEEEecEEEEecCCCchhhhhh
Q 013625 155 DGTSLYAKLVVGADGGKSRVRELA 178 (439)
Q Consensus 155 dg~~~~adlvVgADG~~S~vR~~l 178 (439)
+..+++|++||.|+|.+|.+.+.+
T Consensus 156 ~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 156 DPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CcEEEEcCEEEEEeCCCcHHHHHH
Confidence 234899999999999999999888
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.08 E-value=7.1e-05 Score=68.95 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=53.9
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-----------CCcE
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-----------DGTS 158 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-----------dg~~ 158 (439)
+..++..+.+.|.+.+.+.| ++++.+++|.++..+++. .....|... |..+
T Consensus 95 ~~~~~~el~~~L~~~a~e~G-V~I~~~t~V~dli~~~~~-----------------~~V~GVv~~~~~v~~~g~~~d~~~ 156 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAG-AKIFNGTSVEDLITRDDT-----------------VGVAGVVINWSAIELAGLHVDPLT 156 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcC-CEEECCcEEEEEEEeCCC-----------------CceEEEEeCCccccccCCCCCCEE
Confidence 45688999999999999998 999999999999871110 011222221 2348
Q ss_pred EEecEEEEecCCCchhhhhh
Q 013625 159 LYAKLVVGADGGKSRVRELA 178 (439)
Q Consensus 159 ~~adlvVgADG~~S~vR~~l 178 (439)
+.|++||.|+|..|.+.+.+
T Consensus 157 i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 157 QRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred EEcCEEEEeecCCchHHHHH
Confidence 99999999999999998887
No 65
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.06 E-value=0.00075 Score=64.27 Aligned_cols=318 Identities=15% Similarity=0.132 Sum_probs=167.4
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCcc--ceEEEEeCCCcceeEEeccC
Q 013625 5 KHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYF--DKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 5 ~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 82 (439)
+.++|.|+||+.... .....|..|.|.++.-| +--|.+-.+.-..++ +.+.+..+.+..........
T Consensus 104 ~dlrVcvvEKaa~~G---------ghtlSGaviep~aldEL--~P~wke~~apl~t~vT~d~~~fLt~~~~i~vPv~~pm 172 (621)
T KOG2415|consen 104 KDLRVCVVEKAAEVG---------GHTLSGAVIEPGALDEL--LPDWKEDGAPLNTPVTSDKFKFLTGKGRISVPVPSPM 172 (621)
T ss_pred CceEEEEEeeccccC---------Cceecceeeccchhhhh--CcchhhcCCcccccccccceeeeccCceeecCCCccc
Confidence 468999999999872 33344667777665533 122333322222233 34444444443222211111
Q ss_pred CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEec
Q 013625 83 VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK 162 (439)
Q Consensus 83 ~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ad 162 (439)
.+.. -|.++=..|.++|-+.+++.| |+|..+..+..+..+.|.+.......+.| -.+++.-.-+|+-|-.+.|+
T Consensus 173 ~NhG--NYvv~L~~~v~wLg~kAEe~G-vEiyPg~aaSevly~edgsVkGiaT~D~G---I~k~G~pKd~FerGme~hak 246 (621)
T KOG2415|consen 173 DNHG--NYVVSLGQLVRWLGEKAEELG-VEIYPGFAASEVLYDEDGSVKGIATNDVG---ISKDGAPKDTFERGMEFHAK 246 (621)
T ss_pred ccCC--cEEEEHHHHHHHHHHHHHhhC-ceeccccchhheeEcCCCcEeeEeecccc---ccCCCCccccccccceecce
Confidence 1112 378888999999999999998 99999999999988444333322221111 00122233345556789999
Q ss_pred EEEEecCCCchhhhhh----CCC--CCCCcCCCeEEEEEEEeec----CCceeEEE---EecC--CceEEeecCCCceEE
Q 013625 163 LVVGADGGKSRVRELA----GFK--TTGWSYSQNAIICTVEHNK----ENYCAWQR---FLPA--GPIALLPIGDNFSNI 227 (439)
Q Consensus 163 lvVgADG~~S~vR~~l----~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~--g~~~~~p~~~~~~~~ 227 (439)
+.|=|.|.|..+.+++ ... .++..|+. .+.-..+.+. +....+.. +..+ |-.+++-++++...+
T Consensus 247 ~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYgl-GlKEvWei~~~~~~pG~v~HT~GwPl~~~tYGGsFlYh~~d~~Vav 325 (621)
T KOG2415|consen 247 VTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGL-GLKEVWEIDPENHNPGEVAHTLGWPLDNDTYGGSFLYHFNDPLVAV 325 (621)
T ss_pred eEEEeccccchhHHHHHHHhCcccCCCcceecc-ccceeEecChhhcCCcceeeeccCcccCCccCceeEEEcCCCeEEE
Confidence 9999999999998876 222 22223321 1111122221 11222211 0111 334566777777766
Q ss_pred EEEcCccChhHhhCCCH-HHHHHHHHHhccCCCCCCCCCCCCCcccchhccccCccccccccccCCcceeeecccceeee
Q 013625 228 VWTMNPKDASDCKSMNE-DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP 306 (439)
Q Consensus 228 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (439)
.+++--+=. .. ..++ .+|.+ ++. +|. .-+-+-|... +..-.. -
T Consensus 326 GlVVgLdY~-NP-~lsP~~EFQk-~K~--------hP~--------i~~vleGgk~-------------i~YgAR----a 369 (621)
T KOG2415|consen 326 GLVVGLDYK-NP-YLSPYKEFQK-MKH--------HPS--------ISKVLEGGKR-------------IAYGAR----A 369 (621)
T ss_pred EEEEEecCC-CC-CCCHHHHHHH-hhc--------Ccc--------hhhhhcCcce-------------eeehhh----h
Confidence 666522111 11 1222 33332 111 111 0011111100 000000 0
Q ss_pred ccc---ccccccccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCCCChHHH--HHHHHHhhch
Q 013625 307 LSL---KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL--LKKYEAERKP 377 (439)
Q Consensus 307 ~~~---~~~~~~~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~--l~~Ye~~r~~ 377 (439)
++. +..++.+-..=+|||=+|+.|+---=-|..+||.++..+|+++-.+++...+. .... +..|++.-+.
T Consensus 370 LNEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~-k~~~~~~~~Ye~nlkd 444 (621)
T KOG2415|consen 370 LNEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQS-KMAGLDPTTYEENLKD 444 (621)
T ss_pred hccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccc-cccccChhhHHHhhhh
Confidence 110 01233343456899999999999889999999999999999999988654211 1111 4477775544
No 66
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.71 E-value=0.0023 Score=61.60 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=52.2
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEeCCCcEEEecEEEEec
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGAD 168 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~~~adlvVgAD 168 (439)
..++-..|...|.+.+.+.| ++++.+++|+++.. +++.+ .|...+| ++.||.||-|.
T Consensus 132 g~v~p~~l~~~l~~~~~~~g-~~~~~~~~v~~i~~--------------------~~~~~~~v~~~~g-~~~a~~vV~a~ 189 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLG-VEIIEHTEVQHIEI--------------------RGEKVTAIVTPSG-DVQADQVVLAA 189 (337)
T ss_pred ceEChHHHHHHHHHHHHHcC-CEEEccceEEEEEe--------------------eCCEEEEEEcCCC-EEECCEEEEcC
Confidence 34777999999999999997 99999999999976 33444 4666667 79999999999
Q ss_pred CCCchh
Q 013625 169 GGKSRV 174 (439)
Q Consensus 169 G~~S~v 174 (439)
|.+|.-
T Consensus 190 G~~~~~ 195 (337)
T TIGR02352 190 GAWAGE 195 (337)
T ss_pred Chhhhh
Confidence 998863
No 67
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.52 E-value=0.0068 Score=59.50 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=56.1
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
..++-..+.+.|.+.+.+.+ ++++++++|++++. +++.+.|.+.+| ++.+|.||.|.|
T Consensus 140 g~i~p~~~~~~l~~~~~~~g-~~~~~~~~V~~i~~--------------------~~~~~~v~~~~~-~i~a~~vV~aaG 197 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHG-ATVRDGTKVVEIEP--------------------TELLVTVKTTKG-SYQANKLVVTAG 197 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcC-CEEECCCeEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecC
Confidence 34677789999999988887 99999999999976 345677877766 789998777777
Q ss_pred CC-chhhhhhCCCC
Q 013625 170 GK-SRVRELAGFKT 182 (439)
Q Consensus 170 ~~-S~vR~~l~~~~ 182 (439)
.+ |.+++.++...
T Consensus 198 ~~~~~l~~~~g~~~ 211 (380)
T TIGR01377 198 AWTSKLLSPLGIEI 211 (380)
T ss_pred cchHHHhhhcccCC
Confidence 65 77888876543
No 68
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.34 E-value=0.0094 Score=59.18 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=68.9
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEec-EEEEecCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK-LVVGADGG 170 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ad-lvVgADG~ 170 (439)
++-..+...|.+.+.+.| ++++.+++|++++. . +++..+.|...+| ++.++ +||+|+|.
T Consensus 180 v~p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~---------~---------~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRG-VDIIQNCEVTGFIR---------R---------DGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE---------c---------CCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 555677788889998887 99999999999975 0 0123345777777 57776 67889998
Q ss_pred CchhhhhhCCCCCCCcCCCeEEEEEEEeecCCceeEEEEecCCceEEeecCCCceE
Q 013625 171 KSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSN 226 (439)
Q Consensus 171 ~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 226 (439)
.|.+++.++.......+....+. ..................+++.|..++...
T Consensus 240 ~~~l~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~p~~~g~~~ 292 (407)
T TIGR01373 240 SSVVAAMAGFRLPIESHPLQALV---SEPLKPIIDTVVMSNAVHFYVSQSDKGELV 292 (407)
T ss_pred hHHHHHHcCCCCCcCcccceEEE---ecCCCCCcCCeEEeCCCceEEEEcCCceEE
Confidence 88999888765433333222221 111111111111224455667777666433
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.28 E-value=0.0021 Score=62.18 Aligned_cols=71 Identities=27% Similarity=0.274 Sum_probs=57.5
Q ss_pred ceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeE-EEeCCCcEEEecEEEE
Q 013625 88 LGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVG 166 (439)
Q Consensus 88 ~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~dg~~~~adlvVg 166 (439)
.+..++-..|.+.|.+.+.+.| ++|+.+++|+++.. +++.++ |.+++|+ +.||.||-
T Consensus 140 ~~g~i~~~~l~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~v~gv~~~~g~-i~ad~vV~ 197 (358)
T PF01266_consen 140 EGGVIDPRRLIQALAAEAQRAG-VEIRTGTEVTSIDV--------------------DGGRVTGVRTSDGE-IRADRVVL 197 (358)
T ss_dssp TEEEEEHHHHHHHHHHHHHHTT--EEEESEEEEEEEE--------------------ETTEEEEEEETTEE-EEECEEEE
T ss_pred ccccccccchhhhhHHHHHHhh-hhccccccccchhh--------------------cccccccccccccc-cccceeEe
Confidence 3456889999999999999997 99999999999987 567787 9999998 99999999
Q ss_pred ecCCCchh-hhhhCC
Q 013625 167 ADGGKSRV-RELAGF 180 (439)
Q Consensus 167 ADG~~S~v-R~~l~~ 180 (439)
|.|.+|.- .+.++.
T Consensus 198 a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 198 AAGAWSPQLLPLLGL 212 (358)
T ss_dssp --GGGHHHHHHTTTT
T ss_pred cccccceeeeecccc
Confidence 99998865 333443
No 70
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.28 E-value=0.00082 Score=64.17 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=52.4
Q ss_pred ehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCc
Q 013625 93 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 172 (439)
Q Consensus 93 ~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 172 (439)
.=..+.++|+.++++.+ |+|+.+++|.+++. .+....|...+|+++.||-||-|-|-.|
T Consensus 109 kA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~--------------------~~~~f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 109 KASPIVDALLKELEALG-VTIRTRSRVSSVEK--------------------DDSGFRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred chHHHHHHHHHHHHHcC-cEEEecceEEeEEe--------------------cCceEEEEcCCCCEEEccEEEEecCCcC
Confidence 34788899999999997 99999999999987 4468999999999999999999999666
No 71
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.14 E-value=0.03 Score=55.64 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=50.7
Q ss_pred ehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC-----cEEEecEEEEe
Q 013625 93 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVGA 167 (439)
Q Consensus 93 ~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-----~~~~adlvVgA 167 (439)
+=..+...|.+.+++.| ++|+++++|++++. .++.+++...++ .+++||.||.|
T Consensus 195 ~~~~~~~~l~~~a~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~~~i~a~~vV~a 253 (410)
T PRK12409 195 DIHKFTTGLAAACARLG-VQFRYGQEVTSIKT--------------------DGGGVVLTVQPSAEHPSRTLEFDGVVVC 253 (410)
T ss_pred CHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------eCCEEEEEEEcCCCCccceEecCEEEEC
Confidence 33577888889998887 99999999999976 345566655433 37999999999
Q ss_pred cCCCch-hhhhhCC
Q 013625 168 DGGKSR-VRELAGF 180 (439)
Q Consensus 168 DG~~S~-vR~~l~~ 180 (439)
.|.+|. +.+.++.
T Consensus 254 ~G~~s~~l~~~~~~ 267 (410)
T PRK12409 254 AGVGSRALAAMLGD 267 (410)
T ss_pred CCcChHHHHHHhCC
Confidence 999985 4444443
No 72
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.12 E-value=0.0078 Score=59.50 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=58.1
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
..++...+.+.|.+.+.+.| ++++++++|++++. .++.+.|.+.+| ++.||.||.|+|
T Consensus 144 g~vd~~~l~~aL~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~~~~g-~i~ad~vV~A~G 201 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARG-GEIRLGAEVTALDE--------------------HANGVVVRTTQG-EYEARTLINCAG 201 (393)
T ss_pred eEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCC-EEEeCEEEECCC
Confidence 35778999999999999887 99999999999976 345577877777 799999999999
Q ss_pred CCc-hhhhhhCCC
Q 013625 170 GKS-RVRELAGFK 181 (439)
Q Consensus 170 ~~S-~vR~~l~~~ 181 (439)
.+| .+.+.++..
T Consensus 202 ~~s~~l~~~~g~~ 214 (393)
T PRK11728 202 LMSDRLAKMAGLE 214 (393)
T ss_pred cchHHHHHHhCCC
Confidence 998 466667654
No 73
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.10 E-value=0.02 Score=57.89 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
.|-+.|.+.+. .++|+++++|++|+. +++++.|.+.+|+++.||.||-|--
T Consensus 227 ~l~~~l~~~l~---~~~i~~~~~V~~I~~--------------------~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLT---ETVVKKGAVTTAVSK--------------------QGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhcc---cccEEcCCEEEEEEE--------------------cCCEEEEEECCCCEEEeCEEEECCC
Confidence 34444444443 257999999999987 4566889888999999999998873
No 74
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.08 E-value=0.0039 Score=61.76 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCc-
Q 013625 94 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS- 172 (439)
Q Consensus 94 R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S- 172 (439)
...+.+.|.+.+.+.+ ++|+++++|+++.. .++.+.|.+ ++.++.+|.||.|+|..|
T Consensus 104 a~~v~~~L~~~l~~~g-v~i~~~~~V~~i~~--------------------~~~~~~v~~-~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 104 AADVLDALLNELKELG-VEILTNSKVKSIKK--------------------DDNGFGVET-SGGEYEADKVILATGGLSY 161 (400)
T ss_pred HHHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------------cCCeEEEEE-CCcEEEcCEEEECCCCccc
Confidence 4778888999998886 99999999999976 335566766 566899999999999988
Q ss_pred ----------hhhhhhCCCCC
Q 013625 173 ----------RVRELAGFKTT 183 (439)
Q Consensus 173 ----------~vR~~l~~~~~ 183 (439)
.+.+.+|....
T Consensus 162 p~~gs~G~g~~la~~lG~~i~ 182 (400)
T TIGR00275 162 PQLGSTGDGYEIAESLGHTIV 182 (400)
T ss_pred CCCCCCcHHHHHHHHCCCCEe
Confidence 56667765543
No 75
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.99 E-value=0.023 Score=60.24 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=53.2
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++-..+.+.|.+.+.+ | ++|+++++|++++. .++.+.|.+.+|..+.+|.||.|+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-G-v~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~ad~VV~A~G~ 461 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-Q-LTIHFGHEVARLER--------------------EDDGWQLDFAGGTLASAPVVVLANGH 461 (662)
T ss_pred eeCHHHHHHHHHHhccc-C-cEEEeCCEeeEEEE--------------------eCCEEEEEECCCcEEECCEEEECCCC
Confidence 36778999999999988 6 99999999999976 34667888888888899999999999
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
+|.
T Consensus 462 ~s~ 464 (662)
T PRK01747 462 DAA 464 (662)
T ss_pred Ccc
Confidence 985
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.67 E-value=0.12 Score=51.38 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=47.3
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEeCCCcEEEecEEEEecCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~~~adlvVgADG~ 170 (439)
++-..+.+.|.+.+.+.| ++|+++++|++++. +++.+ .|..+++ ++.+|.||-|.|.
T Consensus 198 ~~p~~~~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~v~t~~~-~~~a~~VV~a~G~ 255 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLG-VKFRFNTPVDGLLV--------------------EGGRITGVQTGGG-VITADAYVVALGS 255 (416)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEEeCCc-EEeCCEEEECCCc
Confidence 344578888999888887 99999999999976 33443 4555544 7899999999999
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
+|.
T Consensus 256 ~~~ 258 (416)
T PRK00711 256 YST 258 (416)
T ss_pred chH
Confidence 985
No 77
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.64 E-value=0.019 Score=59.09 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=50.8
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++|..+...|.+.+.+.+++++. ...|+++.. +++....|.+.+|..+.|+.||.|+|.
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-------------------e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-------------------ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-------------------cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 588999999999999888778985 567888875 022445588889999999999999998
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
++.
T Consensus 156 FL~ 158 (618)
T PRK05192 156 FLR 158 (618)
T ss_pred chh
Confidence 764
No 78
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.62 E-value=0.013 Score=57.01 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=54.2
Q ss_pred ehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC-cEEEecEEEEecCCC
Q 013625 93 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGK 171 (439)
Q Consensus 93 ~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgADG~~ 171 (439)
.=.....+|..++++.+ |+|+++++|.+++. +...+.+.++ .++.||-||-|-|..
T Consensus 84 ~A~sVv~~L~~~l~~~g-V~i~~~~~V~~i~~----------------------~~~~v~~~~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQG-VQFHTRHRWIGWQG----------------------GTLRFETPDGQSTIEADAVVLALGGA 140 (376)
T ss_pred CHHHHHHHHHHHHHHCC-CEEEeCCEEEEEeC----------------------CcEEEEECCCceEEecCEEEEcCCCc
Confidence 34778889999999987 99999999999932 3466776543 579999999999987
Q ss_pred c-----------hhhhhhCCCCCCC
Q 013625 172 S-----------RVRELAGFKTTGW 185 (439)
Q Consensus 172 S-----------~vR~~l~~~~~~~ 185 (439)
| .+.+.+|....+.
T Consensus 141 s~p~~Gs~g~gy~la~~lGh~i~~~ 165 (376)
T TIGR03862 141 SWSQLGSDGAWQQVLDQRGVSVAPF 165 (376)
T ss_pred cccccCCCcHHHHHHHHCCCcccCC
Confidence 7 6677777554443
No 79
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.61 E-value=0.064 Score=54.87 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=52.0
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC----cEEEecEEEEe
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKLVVGA 167 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg----~~~~adlvVgA 167 (439)
++-..|...|...+.+.| ++++.+++|+++.. +++.+.|.+.++ .++.|++||.|
T Consensus 152 vd~~rl~~~l~~~a~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~g~~~~i~a~~VVnA 210 (502)
T PRK13369 152 VDDARLVVLNALDAAERG-ATILTRTRCVSARR--------------------EGGLWRVETRDADGETRTVRARALVNA 210 (502)
T ss_pred ecHHHHHHHHHHHHHHCC-CEEecCcEEEEEEE--------------------cCCEEEEEEEeCCCCEEEEEecEEEEC
Confidence 677888888999998887 99999999999987 345566776554 36999999999
Q ss_pred cCCCch-hhh
Q 013625 168 DGGKSR-VRE 176 (439)
Q Consensus 168 DG~~S~-vR~ 176 (439)
+|.+|. +.+
T Consensus 211 aG~wa~~l~~ 220 (502)
T PRK13369 211 AGPWVTDVIH 220 (502)
T ss_pred CCccHHHHHh
Confidence 999885 444
No 80
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.59 E-value=0.13 Score=51.85 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=34.5
Q ss_pred cEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 111 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 111 v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
++|+++++|++|+. ++++++|++++|+++.||.||-|--..
T Consensus 238 ~~i~~~~~V~~I~~--------------------~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSH--------------------RGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEe--------------------cCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 68999999999987 446688888899899999999986643
No 81
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.58 E-value=0.18 Score=51.51 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 94 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 94 R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
...+.+.|.+.+++.| ++|+++++|++|.. +++....|++.+|+++.||.||-|=|.+..
T Consensus 228 ~~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~-------------------~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 228 VGQIAESLVKGLEKHG-GQIRYRARVTKIIL-------------------ENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHHCC-CEEEeCCeeeEEEe-------------------cCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 3678888999999997 99999999999976 123556788889999999999999998888
Q ss_pred hhhhhC
Q 013625 174 VRELAG 179 (439)
Q Consensus 174 vR~~l~ 179 (439)
+++.+.
T Consensus 288 ~~~Ll~ 293 (493)
T TIGR02730 288 FGKLLK 293 (493)
T ss_pred HHHhCC
Confidence 877663
No 82
>PLN02612 phytoene desaturase
Probab=96.51 E-value=0.36 Score=50.14 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchhh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 175 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 175 (439)
.|.+.|.+.+++.| ++|+++++|++|+. ++ ++..+.+.+.+|+++.||.||-|... ...+
T Consensus 309 ~l~~~l~~~l~~~G-~~I~l~~~V~~I~~---------~~---------~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~ 368 (567)
T PLN02612 309 RLCMPIVDHFQSLG-GEVRLNSRIKKIEL---------ND---------DGTVKHFLLTNGSVVEGDVYVSATPV-DILK 368 (567)
T ss_pred HHHHHHHHHHHhcC-CEEEeCCeeeEEEE---------CC---------CCcEEEEEECCCcEEECCEEEECCCH-HHHH
Confidence 35566667776777 89999999999987 10 12335577788999999999999764 4444
Q ss_pred hhh
Q 013625 176 ELA 178 (439)
Q Consensus 176 ~~l 178 (439)
+.+
T Consensus 369 ~Ll 371 (567)
T PLN02612 369 LLL 371 (567)
T ss_pred HhC
Confidence 444
No 83
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.49 E-value=0.15 Score=49.88 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=49.0
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
++-..+...+.+.+.+.+ ++++++++|++++. .++.+.|..++| ++.+|.||.|+|.+
T Consensus 146 v~p~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 146 LRPELAIKAHLRLAREAG-AELLFNEPVTAIEA--------------------DGDGVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred EcHHHHHHHHHHHHHHCC-CEEECCCEEEEEEe--------------------eCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence 555667777777777776 99999999999987 345678888877 79999999999998
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
+.
T Consensus 204 ~~ 205 (376)
T PRK11259 204 VK 205 (376)
T ss_pred hh
Confidence 65
No 84
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.46 E-value=0.0096 Score=58.79 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 94 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 94 R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
-..+..+|.+.+++.+ |+|+++++|.+++. +++..+.|.++++.++.||-||-|-|..|-
T Consensus 108 a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~-------------------~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 108 ASSVVDALLEELKRLG-VEIHFNTRVKSIEK-------------------KEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHHHHHHHHHT--EEE-S--EEEEEE-------------------ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred HHHHHHHHHHHHHHcC-CEEEeCCEeeeeee-------------------cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 4778889999999987 99999999999987 123448888888889999999999998773
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.43 E-value=0.09 Score=53.84 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=48.7
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC---Cc--EEEecEEEE
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKLVVG 166 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g~--~~~adlvVg 166 (439)
++-..|...|...+.+.| ++++.+++|+++.. +++.+.|.+.+ |+ ++.|+.||.
T Consensus 152 vd~~rl~~~l~~~A~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~a~~VVn 210 (508)
T PRK12266 152 VDDARLVVLNARDAAERG-AEILTRTRVVSARR--------------------ENGLWHVTLEDTATGKRYTVRARALVN 210 (508)
T ss_pred cCHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEEcCCCCEEEEEcCEEEE
Confidence 566777778888888887 99999999999976 33556666653 53 799999999
Q ss_pred ecCCCch
Q 013625 167 ADGGKSR 173 (439)
Q Consensus 167 ADG~~S~ 173 (439)
|.|.+|.
T Consensus 211 AaG~wa~ 217 (508)
T PRK12266 211 AAGPWVK 217 (508)
T ss_pred CCCccHH
Confidence 9999884
No 86
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.40 E-value=0.42 Score=48.04 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=34.3
Q ss_pred EEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 112 KTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 112 ~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
+|+++++|++|+. .++++.|.+++|+++.||.||.|=-.+
T Consensus 235 ~i~~~~~V~~i~~--------------------~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 235 TIHKGTPVTKIDK--------------------SGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred eEEeCCEEEEEEE--------------------cCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 7999999999987 446688899999999999999996643
No 87
>PRK07233 hypothetical protein; Provisional
Probab=96.21 E-value=0.47 Score=47.33 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCc
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 172 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 172 (439)
.|.+.|.+.+.+.+ ++|+.+++|++|+. +++.+.+...+|.++.+|.||-|-..+.
T Consensus 199 ~l~~~l~~~l~~~g-~~v~~~~~V~~i~~--------------------~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 199 TLIDALAEAIEARG-GEIRLGTPVTSVVI--------------------DGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHhcC-ceEEeCCCeeEEEE--------------------cCCceEEEEeCCceEECCEEEECCCHHH
Confidence 46677778787776 89999999999987 3355655557788999999999887643
No 88
>PLN02676 polyamine oxidase
Probab=96.20 E-value=0.22 Score=50.61 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=37.8
Q ss_pred cEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 111 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 111 v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
..|++++.|++|.. ++++|+|++++|+++.||.||.|...+..
T Consensus 245 ~~I~l~~~V~~I~~--------------------~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 245 PRLKLNKVVREISY--------------------SKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred CceecCCEeeEEEE--------------------cCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 57999999999987 55779999999999999999999986544
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.14 E-value=0.019 Score=50.75 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=49.0
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
...+.++.+.|.+.+.+.+ ++++++++|++++. .++++.|+++++.+++||.||-|-|.
T Consensus 78 ~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~--------------------~~~~w~v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRR--------------------DGDGWTVTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEE--------------------ETTTEEEEETTS-EEEEEEEEE---S
T ss_pred cCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEE--------------------eccEEEEEEEecceeeeeeEEEeeec
Confidence 3778889999999998886 88999999999988 45669999999999999999999998
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
.|.
T Consensus 137 ~~~ 139 (203)
T PF13738_consen 137 YSH 139 (203)
T ss_dssp SCS
T ss_pred cCC
Confidence 766
No 90
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.13 E-value=0.048 Score=48.11 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=75.0
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
++|++|+|||++..+....+ .....-..+.++..+..+|+++|+ ++...
T Consensus 38 ~~g~kV~v~E~~~~~GGg~~---~Gg~lf~~iVVq~~a~~iL~elgi----------~y~~~------------------ 86 (230)
T PF01946_consen 38 KAGLKVAVIERKLSPGGGMW---GGGMLFNKIVVQEEADEILDELGI----------PYEEY------------------ 86 (230)
T ss_dssp HHTS-EEEEESSSS-BTTTT---S-CTT---EEEETTTHHHHHHHT-------------EE-------------------
T ss_pred HCCCeEEEEecCCCCCcccc---ccccccchhhhhhhHHHHHHhCCc----------eeEEe------------------
Confidence 35899999999988743322 011111246788889999999876 11110
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe----CC----
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL----SD---- 155 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~d---- 155 (439)
..+-|..+-..+...|...+.+.| ++|+....|+++...++ . .-.++.+.- ..
T Consensus 87 --~~g~~v~d~~~~~s~L~s~a~~aG-akifn~~~vEDvi~r~~-----------~-----rV~GvViNWt~V~~~glHv 147 (230)
T PF01946_consen 87 --GDGYYVADSVEFTSTLASKAIDAG-AKIFNLTSVEDVIVRED-----------D-----RVAGVVINWTPVEMAGLHV 147 (230)
T ss_dssp --SSEEEES-HHHHHHHHHHHHHTTT-EEEEETEEEEEEEEECS-----------C-----EEEEEEEEEHHHHTT--T-
T ss_pred --CCeEEEEcHHHHHHHHHHHHhcCC-CEEEeeeeeeeeEEEcC-----------C-----eEEEEEEEehHHhHhhcCC
Confidence 111266788999999999999976 99999999999987110 0 112333332 12
Q ss_pred -CcEEEecEEEEecCCCchhhhh
Q 013625 156 -GTSLYAKLVVGADGGKSRVREL 177 (439)
Q Consensus 156 -g~~~~adlvVgADG~~S~vR~~ 177 (439)
-.++++++||.|.|.-+.|-+.
T Consensus 148 DPl~i~ak~ViDaTGHda~v~~~ 170 (230)
T PF01946_consen 148 DPLTIRAKVVIDATGHDAEVVRV 170 (230)
T ss_dssp B-EEEEESEEEE---SSSSSTSH
T ss_pred CcceEEEeEEEeCCCCchHHHHH
Confidence 2489999999999988766444
No 91
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.01 E-value=0.03 Score=56.90 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=54.6
Q ss_pred eeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecE
Q 013625 89 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL 163 (439)
Q Consensus 89 ~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adl 163 (439)
+..++-..+.+.|.+.+++.++++|+++++|++++. . .++.+.+.. .+|. ++.|++
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~---------~----------~dg~~~v~~~~~~~G~~~~i~A~~ 237 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR---------N----------DDGSWTVTVKDLKTGEKRTVRAKF 237 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE---------C----------CCCCEEEEEEEcCCCceEEEEcCE
Confidence 356888999999999999886689999999999986 0 123355554 3454 699998
Q ss_pred EEEecCC-CchhhhhhCCC
Q 013625 164 VVGADGG-KSRVRELAGFK 181 (439)
Q Consensus 164 vVgADG~-~S~vR~~l~~~ 181 (439)
||.|.|. .+.+++.+|..
T Consensus 238 VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 238 VFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EEECCCcchHHHHHHcCCC
Confidence 7655554 56778888765
No 92
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.99 E-value=0.22 Score=45.42 Aligned_cols=47 Identities=26% Similarity=0.152 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc-EEEecEEEEe
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGA 167 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~-~~~adlvVgA 167 (439)
..|-++|.. +.+|+++++|+.+.. .++..+|+.++|. ...+|.||-|
T Consensus 108 salak~LAt------dL~V~~~~rVt~v~~--------------------~~~~W~l~~~~g~~~~~~d~vvla 155 (331)
T COG3380 108 SALAKFLAT------DLTVVLETRVTEVAR--------------------TDNDWTLHTDDGTRHTQFDDVVLA 155 (331)
T ss_pred HHHHHHHhc------cchhhhhhhhhhhee--------------------cCCeeEEEecCCCcccccceEEEe
Confidence 455555554 368899999999987 5789999998775 6677766654
No 93
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=95.83 E-value=0.076 Score=51.70 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=51.6
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
+.++|..+.+.+.+.+.+.++++|+. .+|+++.. +++....|.+.+|.++.+|.||-|+|
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-------------------e~~~v~GV~~~~g~~~~a~~vVlaTG 149 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-------------------ENGKVKGVVTKDGEEIEADAVVLATG 149 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-------------------CTTEEEEEEETTSEEEEECEEEE-TT
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-------------------cCCeEEEEEeCCCCEEecCEEEEecc
Confidence 57999999999999999999999975 68999976 13466778899999999999999999
Q ss_pred CC
Q 013625 170 GK 171 (439)
Q Consensus 170 ~~ 171 (439)
.+
T Consensus 150 tf 151 (392)
T PF01134_consen 150 TF 151 (392)
T ss_dssp TG
T ss_pred cc
Confidence 83
No 94
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.81 E-value=0.068 Score=52.94 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 94 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 94 R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
...+...+...+...+ .+|+++++|++|+. .+++++|.+.||+++.||.||-|=.....
T Consensus 208 ~g~~~~~~~~~~~~~g-~~i~l~~~V~~I~~--------------------~~~~v~v~~~~g~~~~ad~VI~a~p~~~l 266 (450)
T PF01593_consen 208 MGGLSLALALAAEELG-GEIRLNTPVTRIER--------------------EDGGVTVTTEDGETIEADAVISAVPPSVL 266 (450)
T ss_dssp TTTTHHHHHHHHHHHG-GGEESSEEEEEEEE--------------------ESSEEEEEETTSSEEEESEEEE-S-HHHH
T ss_pred ccchhHHHHHHHhhcC-ceeecCCcceeccc--------------------cccccccccccceEEecceeeecCchhhh
Confidence 3344444444444445 69999999999998 56889999999999999999988776555
Q ss_pred hh
Q 013625 174 VR 175 (439)
Q Consensus 174 vR 175 (439)
.+
T Consensus 267 ~~ 268 (450)
T PF01593_consen 267 KN 268 (450)
T ss_dssp HT
T ss_pred hh
Confidence 44
No 95
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.71 E-value=0.66 Score=45.97 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe-CCCcEEEecEEEEecCCC
Q 013625 98 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 98 ~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~~~~adlvVgADG~~ 171 (439)
.+.|.+.+++.+ ++|++|++|++|+. +++++++.. .+|+++.||.||-|--..
T Consensus 200 ~~~l~~~l~~~g-~~i~~~~~V~~i~~--------------------~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 200 PEPARRWLDSRG-GEVRLGTRVRSIEA--------------------NAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHcC-CEEEcCCeeeEEEE--------------------cCCcceEEEecCCccccCCEEEEcCCHH
Confidence 344666666666 89999999999987 334455544 478889999999986544
No 96
>PLN02568 polyamine oxidase
Probab=95.53 E-value=1 Score=46.38 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
.|.+.|.+.+. ...|+++++|+.|.. .++++.|++.||+++.||.||.|=-
T Consensus 243 ~Li~~La~~L~---~~~I~ln~~V~~I~~--------------------~~~~v~V~~~dG~~~~aD~VIvTvP 293 (539)
T PLN02568 243 SVIEALASVLP---PGTIQLGRKVTRIEW--------------------QDEPVKLHFADGSTMTADHVIVTVS 293 (539)
T ss_pred HHHHHHHhhCC---CCEEEeCCeEEEEEE--------------------eCCeEEEEEcCCCEEEcCEEEEcCC
Confidence 46667777663 247999999999987 4577999999999999999999754
No 97
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.40 E-value=0.0056 Score=61.17 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=0.0
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC--CC-cEEEecEEEE
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DG-TSLYAKLVVG 166 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg-~~~~adlvVg 166 (439)
+.+++..+..+|.+.+.+.+ ++|++++.|+++..+ .+....|.+. +| .++.|+++|.
T Consensus 85 ~~~~~~~~~~~l~~~l~e~g-v~v~~~t~v~~v~~~-------------------~~~i~~V~~~~~~g~~~i~A~~~ID 144 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAG-VEVLLGTRVVDVIRD-------------------GGRITGVIVETKSGRKEIRAKVFID 144 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc-ccccccccccccccc-------------------ccccccccccccccccccccccccc
Confidence 45777778888888887766 999999999999871 1123334443 34 5999999999
Q ss_pred ecCCCchhhhhhCC
Q 013625 167 ADGGKSRVRELAGF 180 (439)
Q Consensus 167 ADG~~S~vR~~l~~ 180 (439)
|+| ...+-...|.
T Consensus 145 aTG-~g~l~~~aG~ 157 (428)
T PF12831_consen 145 ATG-DGDLAALAGA 157 (428)
T ss_dssp --------------
T ss_pred ccc-cccccccccc
Confidence 999 4555555543
No 98
>PLN02976 amine oxidase
Probab=95.29 E-value=1 Score=50.91 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=46.6
Q ss_pred ccCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCCC-CChHHHHHHHHHhhchhhHHHHHHHHH
Q 013625 316 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD-IGEASLLKKYEAERKPANIVMMAVLDG 388 (439)
Q Consensus 316 ~~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~-~~~~~~l~~Ye~~r~~~~~~~~~~~~~ 388 (439)
..+||++.|+|.+...|-+-+| |++++...|..|...+..+.+ ....++++.+++.....-..+-.....
T Consensus 1149 VggRLFFAGEATS~~~pGTVHG---AIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 1219 (1713)
T PLN02976 1149 VENCLFFAGEATCKEHPDTVGG---AMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSESERDEVRDITKR 1219 (1713)
T ss_pred CCCcEEEEehhhhCCCcchHHH---HHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhhhHHHHHHHHHh
Confidence 4578999999988777766555 688888888888887776644 234567777766544443333333333
No 99
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.25 E-value=0.053 Score=53.32 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=53.4
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++-..+...|.+.+.+ | ++|++++.|++++. +++.+.|.+.+|.++.||.||-|.|.
T Consensus 131 ~idp~~~~~~l~~~~~~-G-~~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~a~~vV~a~G~ 188 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-R-LTLHFNTEITSLER--------------------DGEGWQLLDANGEVIAASVVVLANGA 188 (381)
T ss_pred ccChHHHHHHHHhccCC-C-cEEEeCCEEEEEEE--------------------cCCeEEEEeCCCCEEEcCEEEEcCCc
Confidence 46778999999999988 6 99999999999986 44568888899988999999999999
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
+|.
T Consensus 189 ~~~ 191 (381)
T TIGR03197 189 QAG 191 (381)
T ss_pred ccc
Confidence 885
No 100
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.16 Score=44.87 Aligned_cols=125 Identities=17% Similarity=0.150 Sum_probs=80.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCchhhhhhhcCccceEEEEeCCCcceeEEeccCC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDV 83 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (439)
++|++|+|+||+-.+-.... ....--..+.+...+.++|+++|+. +..
T Consensus 51 k~g~kV~i~E~~ls~GGG~w---~GGmlf~~iVv~~~a~~iL~e~gI~----------ye~------------------- 98 (262)
T COG1635 51 KAGLKVAIFERKLSFGGGIW---GGGMLFNKIVVREEADEILDEFGIR----------YEE------------------- 98 (262)
T ss_pred hCCceEEEEEeecccCCccc---ccccccceeeecchHHHHHHHhCCc----------cee-------------------
Confidence 56899999999887721111 0000001345556677777777761 111
Q ss_pred CCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---------C
Q 013625 84 NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---------S 154 (439)
Q Consensus 84 ~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---------~ 154 (439)
....-|..+-..+..-|..++.+.| ++|..+..|.++...++. .-.++.+.- -
T Consensus 99 -~e~g~~v~ds~e~~skl~~~a~~aG-aki~n~~~veDvi~r~~~----------------rVaGvVvNWt~V~~~~lhv 160 (262)
T COG1635 99 -EEDGYYVADSAEFASKLAARALDAG-AKIFNGVSVEDVIVRDDP----------------RVAGVVVNWTPVQMAGLHV 160 (262)
T ss_pred -cCCceEEecHHHHHHHHHHHHHhcC-ceeeecceEEEEEEecCC----------------ceEEEEEecchhhhccccc
Confidence 1111266778899999999999998 999999999999871110 012233321 1
Q ss_pred CCcEEEecEEEEecCCCchhhhhh
Q 013625 155 DGTSLYAKLVVGADGGKSRVRELA 178 (439)
Q Consensus 155 dg~~~~adlvVgADG~~S~vR~~l 178 (439)
|--++++++||.|.|.--.|-+.+
T Consensus 161 DPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 161 DPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred CcceeeEEEEEeCCCCchHHHHHH
Confidence 334899999999999988887666
No 101
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.11 E-value=0.075 Score=52.40 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=59.1
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc-eeEEEeCCCcE-EEecEEEEe
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSDGTS-LYAKLVVGA 167 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~dg~~-~~adlvVgA 167 (439)
..++-..+...|.+.+.+.| ++|+++++|++++. +++ ...+.+.+|++ ++|++||-|
T Consensus 148 giV~~~~~t~~l~e~a~~~g-~~i~ln~eV~~i~~--------------------~~dg~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 148 GIVDPGELTRALAEEAQANG-VELRLNTEVTGIEK--------------------QSDGVFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred ceEcHHHHHHHHHHHHHHcC-CEEEecCeeeEEEE--------------------eCCceEEEEecCCcEEEEeeEEEEC
Confidence 45888899999999999996 99999999999988 334 67777888876 999999999
Q ss_pred cCCCchh-hhhhCCCC
Q 013625 168 DGGKSRV-RELAGFKT 182 (439)
Q Consensus 168 DG~~S~v-R~~l~~~~ 182 (439)
-|..|.- .+..|...
T Consensus 207 AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 207 AGLYADPLAQMAGIPE 222 (429)
T ss_pred CchhHHHHHHHhCCCc
Confidence 9987754 55555554
No 102
>PLN02268 probable polyamine oxidase
Probab=95.10 E-value=1.5 Score=43.98 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=34.3
Q ss_pred cEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 111 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 111 v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
++|++++.|++|.. .++++.|++.+|.++.||.||.|--
T Consensus 211 ~~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~~~ad~VIva~P 249 (435)
T PLN02268 211 LDIRLNHRVTKIVR--------------------RYNGVKVTVEDGTTFVADAAIIAVP 249 (435)
T ss_pred CceeCCCeeEEEEE--------------------cCCcEEEEECCCcEEEcCEEEEecC
Confidence 68999999999987 4567899999999999999999963
No 103
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.84 E-value=0.14 Score=50.28 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCc--h
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS--R 173 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S--~ 173 (439)
.+...+.+.+.+.+ ++++++++|+++.. ++..+.+.+.+|+++.+|+||.|.|..+ .
T Consensus 184 ~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------------~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~ 242 (377)
T PRK04965 184 EVSSRLQHRLTEMG-VHLLLKSQLQGLEK--------------------TDSGIRATLDSGRSIEVDAVIAAAGLRPNTA 242 (377)
T ss_pred HHHHHHHHHHHhCC-CEEEECCeEEEEEc--------------------cCCEEEEEEcCCcEEECCEEEECcCCCcchH
Confidence 45566777787776 99999999999976 3356778899999999999999999865 4
Q ss_pred hhhhhCCC
Q 013625 174 VRELAGFK 181 (439)
Q Consensus 174 vR~~l~~~ 181 (439)
+.+..+..
T Consensus 243 l~~~~gl~ 250 (377)
T PRK04965 243 LARRAGLA 250 (377)
T ss_pred HHHHCCCC
Confidence 55555544
No 104
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.83 E-value=0.1 Score=52.89 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=54.6
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEE
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLV 164 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlv 164 (439)
..++-..+.+.|.+.+.+.| ++|+++++|++++. +.++.+.+.. .+|. +++||+|
T Consensus 173 g~Vdp~~l~~aL~~~a~~~G-v~i~~~t~V~~i~~-------------------~~~~~v~v~~~~~~~g~~~~i~A~~V 232 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNG-TTIRFGHEVRNLKR-------------------QSDGSWTVTVKNTRTGGKRTLNTRFV 232 (483)
T ss_pred EEECHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-------------------cCCCeEEEEEeeccCCceEEEECCEE
Confidence 45888999999999999887 99999999999976 0123455543 3342 6899988
Q ss_pred -EEecCCCchhhhhhCCC
Q 013625 165 -VGADGGKSRVRELAGFK 181 (439)
Q Consensus 165 -VgADG~~S~vR~~l~~~ 181 (439)
|+|+|..+.+++.+|..
T Consensus 233 V~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 233 FVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 56666677788888766
No 105
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.83 E-value=0.15 Score=51.76 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=54.2
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCccccccc-CceeEEEe---CCCc--EEEecE
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK-GHLAKLDL---SDGT--SLYAKL 163 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~---~dg~--~~~adl 163 (439)
..++...|.+.|.+.+.+.++++|+++++|+++.. . ++.+++.. .+|. ++.||+
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~--------------------~~d~~w~v~v~~t~~g~~~~i~Ad~ 238 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER--------------------LSDGGWEVTVKDRNTGEKREQVADY 238 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--------------------CCCCCEEEEEEecCCCceEEEEcCE
Confidence 46889999999999997654599999999999976 2 35566653 3453 689999
Q ss_pred EEEecCCCc-hhhhhhCCC
Q 013625 164 VVGADGGKS-RVRELAGFK 181 (439)
Q Consensus 164 vVgADG~~S-~vR~~l~~~ 181 (439)
||-|-|.+| .+.+.+|..
T Consensus 239 VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 239 VFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred EEECCCcchHHHHHHcCCC
Confidence 976666655 577777765
No 106
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.81 E-value=0.68 Score=48.71 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=53.0
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEE
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVV 165 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvV 165 (439)
.++-..|...|...+.+.| ++|+.+++|+++.. +.+ ++..+.|.. .+|. ++.+|.||
T Consensus 228 ~vdp~rl~~al~~~A~~~G-a~i~~~~~V~~l~~---------~~~--------~g~v~gV~v~d~~tg~~~~i~a~~VV 289 (627)
T PLN02464 228 QMNDSRLNVALACTAALAG-AAVLNYAEVVSLIK---------DES--------TGRIVGARVRDNLTGKEFDVYAKVVV 289 (627)
T ss_pred EEcHHHHHHHHHHHHHhCC-cEEEeccEEEEEEE---------ecC--------CCcEEEEEEEECCCCcEEEEEeCEEE
Confidence 3677899999999999997 99999999999976 000 012223333 2343 68999999
Q ss_pred EecCCCch-hhhhhCCC
Q 013625 166 GADGGKSR-VRELAGFK 181 (439)
Q Consensus 166 gADG~~S~-vR~~l~~~ 181 (439)
-|.|.+|. +++.++..
T Consensus 290 nAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 290 NAAGPFCDEVRKMADGK 306 (627)
T ss_pred ECCCHhHHHHHHhccCc
Confidence 99999986 66666533
No 107
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.53 E-value=0.46 Score=47.61 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCcEEEecEEEEecCCCch
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~~~~adlvVgADG~~S~ 173 (439)
..+...|.+.+++.+ ++|+++++|+++..+ ++ .+..+.|... ++.++.++.||-|.|..+.
T Consensus 123 ~~l~~~L~~~a~~~G-v~i~~~~~v~~l~~~---------~~--------~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLG-VEIRYGIAVDRIPPE---------AF--------DGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEec---------CC--------CCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 468888999998887 999999999999761 00 1123334443 3358999999999998876
Q ss_pred hhhh
Q 013625 174 VREL 177 (439)
Q Consensus 174 vR~~ 177 (439)
-++.
T Consensus 185 n~~~ 188 (432)
T TIGR02485 185 NRDW 188 (432)
T ss_pred CHHH
Confidence 5443
No 108
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=94.50 E-value=0.28 Score=50.61 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=52.5
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
..++|..+...|.+.+.+.++++++.+ .|+++.. + +++..+.|.+.+|..+.|+.||.|.|
T Consensus 91 aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~---------e---------~~g~V~GV~t~~G~~I~Ad~VILATG 151 (617)
T TIGR00136 91 AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLIL---------E---------DNDEIKGVVTQDGLKFRAKAVIITTG 151 (617)
T ss_pred HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEE---------e---------cCCcEEEEEECCCCEEECCEEEEccC
Confidence 468999999999999999987888765 7888765 0 02355678889999999999999999
Q ss_pred CCch
Q 013625 170 GKSR 173 (439)
Q Consensus 170 ~~S~ 173 (439)
.++.
T Consensus 152 tfL~ 155 (617)
T TIGR00136 152 TFLR 155 (617)
T ss_pred cccC
Confidence 9974
No 109
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=94.11 E-value=0.39 Score=48.84 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=56.5
Q ss_pred eeehHHHHHHHHHHhhc----CC-CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEE
Q 013625 91 VVENKVLHSSLLSCMQN----TE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVV 165 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~----~~-~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvV 165 (439)
.++-..|.+.|.+.+.+ .| .++|+++++|++++. ..++.+.|.+.+| ++.||.||
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-------------------~~~~~~~V~T~~G-~i~A~~VV 266 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-------------------SNDSLYKIHTNRG-EIRARFVV 266 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-------------------cCCCeEEEEECCC-EEEeCEEE
Confidence 57778899999999988 54 278999999999987 1245677888777 69999999
Q ss_pred EecCCCch-hhhhhCCC
Q 013625 166 GADGGKSR-VRELAGFK 181 (439)
Q Consensus 166 gADG~~S~-vR~~l~~~ 181 (439)
-|-|.+|. +.+.+|..
T Consensus 267 vaAG~~S~~La~~~Gi~ 283 (497)
T PTZ00383 267 VSACGYSLLFAQKMGYG 283 (497)
T ss_pred ECcChhHHHHHHHhCCC
Confidence 99999985 56666653
No 110
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=94.06 E-value=0.42 Score=44.97 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=58.3
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
-.+.-..-..+|.+.+++.| +.++.|.+|+.+... + +.+..+.|.+.+|+.+.|+=+|-|-|
T Consensus 148 Gvi~a~kslk~~~~~~~~~G-~i~~dg~~v~~~~~~----------~-------e~~~~v~V~Tt~gs~Y~akkiI~t~G 209 (399)
T KOG2820|consen 148 GVINAAKSLKALQDKARELG-VIFRDGEKVKFIKFV----------D-------EEGNHVSVQTTDGSIYHAKKIIFTVG 209 (399)
T ss_pred cEeeHHHHHHHHHHHHHHcC-eEEecCcceeeEeec----------c-------CCCceeEEEeccCCeeecceEEEEec
Confidence 34777888889999999998 999999999999861 1 14588999999999999999999999
Q ss_pred C--CchhhhhhC
Q 013625 170 G--KSRVRELAG 179 (439)
Q Consensus 170 ~--~S~vR~~l~ 179 (439)
+ ++.++..++
T Consensus 210 aWi~klL~~~~~ 221 (399)
T KOG2820|consen 210 AWINKLLPTSLA 221 (399)
T ss_pred HHHHhhcCcccc
Confidence 7 455555443
No 111
>PLN02576 protoporphyrinogen oxidase
Probab=93.81 E-value=4 Score=41.60 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=29.2
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhh
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 357 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 357 (439)
+++.++||... |-|++-||++|..+|+.|...+.
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHHHh
Confidence 68999999985 55999999999999999987654
No 112
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.56 E-value=1.7 Score=42.81 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
......+.+.+.+.| ++|+|+++|.+++. +++....|..++|.++.+|.||-|=|..|.
T Consensus 173 ~~vvkni~~~l~~~G-~ei~f~t~VeDi~~-------------------~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLG-GEIRFNTEVEDIEI-------------------EDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcC-cEEEeeeEEEEEEe-------------------cCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 556677889999998 99999999999987 123457788899999999999999997664
No 113
>PLN02661 Putative thiazole synthesis
Probab=93.55 E-value=1.1 Score=43.15 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe----CC---C-----cEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL----SD---G-----TSLYAK 162 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~----~d---g-----~~~~ad 162 (439)
..+.+.|.+.+.+.++++++.++.|+++..+ .. .-.++.+.. .+ + ..+.|+
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~---------~g--------rVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak 234 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK---------GD--------RVGGVVTNWALVAQNHDTQSCMDPNVMEAK 234 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec---------CC--------EEEEEEeecchhhhccCCCCccceeEEECC
Confidence 5566778887776666999999999999871 00 112233211 11 1 268999
Q ss_pred EEEEecCCCchh
Q 013625 163 LVVGADGGKSRV 174 (439)
Q Consensus 163 lvVgADG~~S~v 174 (439)
.||-|-|..+.+
T Consensus 235 aVVlATGh~g~~ 246 (357)
T PLN02661 235 VVVSSCGHDGPF 246 (357)
T ss_pred EEEEcCCCCCcc
Confidence 999999966643
No 114
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.46 E-value=1.5 Score=44.56 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=90.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCC---chhhhhhh---------cCccce-EEEEe
Q 013625 3 LTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA---WQYVQQHR---------HAYFDK-MQVWD 69 (439)
Q Consensus 3 ~~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl---~~~l~~~~---------~~~~~~-~~~~~ 69 (439)
..+|++|+|+|++... ....++...|-+.+++.|++..+ .+.+.+.. +.+... +-+++
T Consensus 32 A~RGl~v~LvE~~D~A---------sGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~v~p~~~~lp~~~ 102 (532)
T COG0578 32 AGRGLKVALVEKGDLA---------SGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHLVEPLPFLLPHLP 102 (532)
T ss_pred HhCCCeEEEEecCccc---------CcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccccccCcCeEeccC
Confidence 4689999999999987 24566777888889999888642 23333321 111111 11122
Q ss_pred ----------------CCCcc------eeEEeccC-------CCC-------ccceeeeehHHHHHHHHHHhhcCCCcEE
Q 013625 70 ----------------YTGLG------YTKYNARD-------VNK-------EILGCVVENKVLHSSLLSCMQNTEFQKT 113 (439)
Q Consensus 70 ----------------~~~~~------~~~~~~~~-------~~~-------~~~~~~i~R~~l~~~L~~~~~~~~~v~v 113 (439)
..+.. ...++... +.. .+.-+.++=..|.-.+...+.+.| .++
T Consensus 103 ~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~~a~~A~~~G-a~i 181 (532)
T COG0578 103 GLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAANARDAAEHG-AEI 181 (532)
T ss_pred CcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHHHHHHHHhcc-cch
Confidence 00010 11111110 000 011134666778888888888888 899
Q ss_pred EcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC---Cc--EEEecEEEEecCCCchh-hhhhC
Q 013625 114 IYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKLVVGADGGKSRV-RELAG 179 (439)
Q Consensus 114 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g~--~~~adlvVgADG~~S~v-R~~l~ 179 (439)
+..++|+++.. +++.+.|..+| |+ +++|+.||=|-|.++-= ++..+
T Consensus 182 l~~~~v~~~~r--------------------e~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~ 233 (532)
T COG0578 182 LTYTRVESLRR--------------------EGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAG 233 (532)
T ss_pred hhcceeeeeee--------------------cCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhc
Confidence 99999999987 33445566654 32 79999999999999864 55553
No 115
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.27 E-value=0.27 Score=48.51 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=64.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCch-hhhhhhcCccceEEEEeCCCcceeEEeccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ-YVQQHRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
.+|++|+|+|+++.....+. .......+.+.++..+..++...|++. ++...+. ..+...+ .
T Consensus 23 r~Gl~V~LiE~rp~~~s~a~--~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs-----l~~~aad----------~ 85 (436)
T PRK05335 23 KRGVPVELYEMRPVKKTPAH--HTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS-----LIMEAAD----------A 85 (436)
T ss_pred hCCCcEEEEEccCccCcccc--cCccccccccchhhhhhhHHhcCCchHHHHHHhcc-----hheeccc----------c
Confidence 47999999999887643211 001122356667777888999999886 4433222 1111100 0
Q ss_pred CCCccce-eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEe
Q 013625 83 VNKEILG-CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 122 (439)
Q Consensus 83 ~~~~~~~-~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i 122 (439)
..-+..+ ..++|..|.+.|.+.+.+.++++++ ..+|+++
T Consensus 86 ~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l 125 (436)
T PRK05335 86 HRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI 125 (436)
T ss_pred cCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence 0112222 4689999999999999999999998 4588887
No 116
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.25 E-value=0.32 Score=49.20 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
.++...|.+.+++.+ ++++.+++|++++. .++.+.+.+.+|+++.+|.||-|.|.+...
T Consensus 216 ~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 216 DEISDALSYHLRDSG-VTIRHNEEVEKVEG--------------------GDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHHHHHHHHHcC-CEEEECCEEEEEEE--------------------eCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 356677888888776 99999999999975 335677888889999999999999988765
Q ss_pred h
Q 013625 175 R 175 (439)
Q Consensus 175 R 175 (439)
.
T Consensus 275 ~ 275 (461)
T PRK05249 275 D 275 (461)
T ss_pred c
Confidence 4
No 117
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.02 E-value=0.34 Score=49.80 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=51.8
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
....++.+.|.+.+++.+ ++++.+++|+++.. .++...|.+.+|.++.+|.||.|+|.+
T Consensus 263 ~~~~~l~~~l~~~~~~~g-v~i~~~~~V~~I~~--------------------~~~~~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYD-VDIMNLQRASKLEP--------------------AAGLIEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCCCEEEcCEEEECCCCC
Confidence 456788899999999887 99999999999976 335678888889999999999999997
Q ss_pred c
Q 013625 172 S 172 (439)
Q Consensus 172 S 172 (439)
+
T Consensus 322 ~ 322 (517)
T PRK15317 322 W 322 (517)
T ss_pred c
Confidence 6
No 118
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.86 E-value=0.24 Score=36.47 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG 156 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg 156 (439)
..+...+.+.+++.+ +++++++++.+++. ++.+++|+++||
T Consensus 40 ~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~--------------------~~~~~~V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRG-VEVHTNTKVKEIEK--------------------DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESEEEEEEEE--------------------ETTSEEEEEETS
T ss_pred HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------------eCCEEEEEEecC
Confidence 667777888888886 99999999999987 334477999887
No 119
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=92.42 E-value=0.48 Score=47.88 Aligned_cols=61 Identities=20% Similarity=0.109 Sum_probs=50.1
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
..++-..+.+.|.+.+.+.| ++|+.++.|++++. ++.+.|.+++| ++.||.||-|-|
T Consensus 178 g~i~P~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~---------------------~~~~~v~t~~g-~v~A~~VV~Atg 234 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELG-VEIHENTPMTGLEE---------------------GQPAVVRTPDG-QVTADKVVLALN 234 (460)
T ss_pred eEECHHHHHHHHHHHHHHcC-CEEECCCeEEEEee---------------------CCceEEEeCCc-EEECCEEEEccc
Confidence 34677889999999999987 99999999999964 23466777777 689999999999
Q ss_pred CCch
Q 013625 170 GKSR 173 (439)
Q Consensus 170 ~~S~ 173 (439)
.+|.
T Consensus 235 a~s~ 238 (460)
T TIGR03329 235 AWMA 238 (460)
T ss_pred cccc
Confidence 8864
No 120
>PRK06116 glutathione reductase; Validated
Probab=92.29 E-value=0.51 Score=47.53 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC-ceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
++...|.+.+++.+ ++++++++|.+++. ++ +.+.+.+.+|+++.+|.||-|-|....+
T Consensus 209 ~~~~~l~~~L~~~G-V~i~~~~~V~~i~~--------------------~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 209 DIRETLVEEMEKKG-IRLHTNAVPKAVEK--------------------NADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHHHHHHHHHHHCC-cEEECCCEEEEEEE--------------------cCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 45667777887776 99999999999976 22 3377888899999999999999987654
Q ss_pred h
Q 013625 175 R 175 (439)
Q Consensus 175 R 175 (439)
.
T Consensus 268 ~ 268 (450)
T PRK06116 268 D 268 (450)
T ss_pred C
Confidence 3
No 121
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=92.07 E-value=13 Score=36.35 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=52.2
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++-..+.+.|.+.+.+.|...+..++.+..+.. ....+.|.+.+|+ +.||.||-|-|.
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--------------------~~~~~~v~t~~g~-i~a~~vv~a~G~ 210 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLER--------------------DGRVVGVETDGGT-IEADKVVLAAGA 210 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEe--------------------cCcEEEEEeCCcc-EEeCEEEEcCch
Confidence 3566788899999999998667777999999976 1145778888887 999999999999
Q ss_pred Cchhh
Q 013625 171 KSRVR 175 (439)
Q Consensus 171 ~S~vR 175 (439)
+|..-
T Consensus 211 ~~~~l 215 (387)
T COG0665 211 WAGEL 215 (387)
T ss_pred HHHHH
Confidence 98754
No 122
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=91.80 E-value=0.66 Score=45.80 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=49.7
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeE-EEeCCC--cEEEecEEEEec
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDG--TSLYAKLVVGAD 168 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~dg--~~~~adlvVgAD 168 (439)
+.=..|.+.|.+.+++.| ++++.+.+|+++.. .++.++ |...++ .++.||-+|-|.
T Consensus 260 v~G~RL~~aL~~~~~~~G-g~il~g~~V~~i~~--------------------~~~~v~~V~t~~g~~~~l~AD~vVLAa 318 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLG-GVMLPGDRVLRAEF--------------------EGNRVTRIHTRNHRDIPLRADHFVLAS 318 (419)
T ss_pred CcHHHHHHHHHHHHHHCC-CEEEECcEEEEEEe--------------------eCCeEEEEEecCCccceEECCEEEEcc
Confidence 555788888999999998 89999999999976 335455 444665 489999999999
Q ss_pred CCC-ch
Q 013625 169 GGK-SR 173 (439)
Q Consensus 169 G~~-S~ 173 (439)
|.+ |.
T Consensus 319 Gaw~S~ 324 (419)
T TIGR03378 319 GSFFSN 324 (419)
T ss_pred CCCcCH
Confidence 999 76
No 123
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=91.17 E-value=0.61 Score=48.61 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee---E-EEeCCCc--EEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA---K-LDLSDGT--SLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v---~-v~~~dg~--~~~adlvVgAD 168 (439)
..+...|++.+.+.++++++.++.++++.. +++.+ . +...+|. .+.|+.||.|+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~--------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVIlAT 192 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILV--------------------DDGHVRGLVAMNMMEGTLVQIRANAVVMAT 192 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEE--------------------eCCEEEEEEEEEcCCCcEEEEECCEEEECC
Confidence 467888888888766699999999999986 12222 2 3445674 78999999999
Q ss_pred CCCchhh
Q 013625 169 GGKSRVR 175 (439)
Q Consensus 169 G~~S~vR 175 (439)
|..|.+-
T Consensus 193 GG~~~l~ 199 (582)
T PRK09231 193 GGAGRVY 199 (582)
T ss_pred CCCcCCC
Confidence 9999763
No 124
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.05 E-value=0.83 Score=45.15 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
.+...+.+.+.+.+ ++++++++|++++. ++.+.+.+.+|+++.+|+||.|-|.....
T Consensus 187 ~~~~~l~~~l~~~G-V~i~~~~~V~~i~~---------------------~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 187 PVQRYLLQRHQQAG-VRILLNNAIEHVVD---------------------GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred HHHHHHHHHHHHCC-CEEEeCCeeEEEEc---------------------CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 45566777777776 99999999999963 24567888999999999999999986543
No 125
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.88 E-value=0.83 Score=42.89 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=47.9
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
+...++...|.+.+.+.+ +++++ .+|++++. .+..+.+...+|.++.+|.||-|.|.+
T Consensus 54 ~~~~~~~~~l~~~~~~~g-v~~~~-~~v~~v~~--------------------~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFG-AEIIY-EEVIKVDL--------------------SDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred CChHHHHHHHHHHHHHcC-CeEEE-EEEEEEEe--------------------cCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 444577778888888876 89998 89999976 345677888888999999999999986
Q ss_pred c
Q 013625 172 S 172 (439)
Q Consensus 172 S 172 (439)
.
T Consensus 112 ~ 112 (300)
T TIGR01292 112 A 112 (300)
T ss_pred c
Confidence 4
No 126
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.68 E-value=0.92 Score=46.59 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=50.4
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
.....+...|.+.+++.+ ++++.+++|+++.. .++.+.+.+++|.++.+|.||.|.|.+
T Consensus 264 ~~~~~l~~~l~~~l~~~g-v~i~~~~~V~~I~~--------------------~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 264 TTGSQLAANLEEHIKQYP-IDLMENQRAKKIET--------------------EDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCHHHHHHHHHHHHHHhC-CeEEcCCEEEEEEe--------------------cCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 345778888888888876 99999999999976 345678888889999999999999987
Q ss_pred c
Q 013625 172 S 172 (439)
Q Consensus 172 S 172 (439)
.
T Consensus 323 ~ 323 (515)
T TIGR03140 323 W 323 (515)
T ss_pred c
Confidence 4
No 127
>PLN03000 amine oxidase
Probab=90.67 E-value=12 Score=40.80 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=29.1
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhh
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 357 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 357 (439)
.|||.+.|++.+...|-+-+ =|++++...|+.|...++
T Consensus 587 ~GRIfFAGEaTs~~~~GTVh---GAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 587 DGRLFFAGEATTRRYPATMH---GAFVTGLREAANMAQSAK 624 (881)
T ss_pred CCcEEEeehHHhCCCCeeHH---HHHHHHHHHHHHHHHHhh
Confidence 58999999999888774444 467888888877776654
No 128
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=90.41 E-value=11 Score=40.83 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=30.4
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 359 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 359 (439)
.|||.+.|++.+...|-+ +.=|++++...|+.|...++..
T Consensus 643 ~GRL~FAGEaTs~~~~Gt---VhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 643 DGRVFFAGEATNKQYPAT---MHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred CCCEEEEEhhHhCCCCeE---hHHHHHHHHHHHHHHHHHHhhc
Confidence 589999999987765533 4457888888888888776643
No 129
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.14 E-value=1.2 Score=45.09 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
..+...|.+.+.+.+ ++++.+++|.+++. +++.+.+.+.+|+++.+|.||-|-|.....
T Consensus 218 ~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------------~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 218 ADAAEVLEEVFARRG-MTVLKRSRAESVER--------------------TGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHHHHHHHHHCC-cEEEcCCEEEEEEE--------------------eCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 345566777777776 99999999999975 335677888889999999999999987665
Q ss_pred h
Q 013625 175 R 175 (439)
Q Consensus 175 R 175 (439)
.
T Consensus 277 ~ 277 (466)
T PRK07845 277 A 277 (466)
T ss_pred C
Confidence 3
No 130
>PLN02507 glutathione reductase
Probab=90.08 E-value=1.1 Score=45.74 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
.++.+.+.+.+.+.+ ++|+.+++|.+++. .++.+.+.+.+|+++.+|.||-|-|.....
T Consensus 244 ~~~~~~l~~~l~~~G-I~i~~~~~V~~i~~--------------------~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 244 DEMRAVVARNLEGRG-INLHPRTNLTQLTK--------------------TEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 345566666777776 99999999999975 335677888889999999999999987665
No 131
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=90.05 E-value=0.95 Score=46.30 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
..+.+.|.+.+++.| ++|++++.|++|.. +.+..+.|.+++|+++.||.||-|=+....+
T Consensus 219 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~-------------------~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLG-GELRLNAEVIRIET-------------------EGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCeEEEEEe-------------------eCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 678888999998887 89999999999986 1224467888999999999999988877777
Q ss_pred hhhh
Q 013625 175 RELA 178 (439)
Q Consensus 175 R~~l 178 (439)
.+.+
T Consensus 279 ~~l~ 282 (502)
T TIGR02734 279 RRLL 282 (502)
T ss_pred HHhc
Confidence 6555
No 132
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=89.46 E-value=1.2 Score=44.90 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC--cEEEecEEEEecCCCc
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKS 172 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg--~~~~adlvVgADG~~S 172 (439)
..+...+.+.+++.+ ++++.+++|.+++. +++.+.+.+.+| .++.+|.||-|-|...
T Consensus 211 ~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKG-VKILTNTKVTAVEK--------------------NDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 456777888888876 99999999999976 345677777777 5899999999999887
Q ss_pred hhh
Q 013625 173 RVR 175 (439)
Q Consensus 173 ~vR 175 (439)
.+.
T Consensus 270 ~~~ 272 (461)
T TIGR01350 270 NTE 272 (461)
T ss_pred cCC
Confidence 654
No 133
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=89.34 E-value=0.86 Score=46.45 Aligned_cols=62 Identities=15% Similarity=0.135 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc-eeEEEeCC-C--cEEEecEEEEecCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSD-G--TSLYAKLVVGADGG 170 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~d-g--~~~~adlvVgADG~ 170 (439)
..+...|.+.+.+..+++|++++.|+++.. +++ .+.|...+ + ..+.++.||.|+|.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~--------------------~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLI--------------------ETGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeec--------------------cCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 578889999998754599999999999976 122 22244332 3 37899999999999
Q ss_pred Cchhhh
Q 013625 171 KSRVRE 176 (439)
Q Consensus 171 ~S~vR~ 176 (439)
.|.+..
T Consensus 188 ~~~~~~ 193 (488)
T TIGR00551 188 AGKLYQ 193 (488)
T ss_pred ccCCCC
Confidence 998644
No 134
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.13 E-value=1.2 Score=44.95 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC---cEEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg---~~~~adlvVgADG~~ 171 (439)
..+...+.+.+.+.+ ++++.+++|++++. +++.+.+.+++| +++.+|.||-|-|..
T Consensus 213 ~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------------~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 213 KEISKLAERALKKRG-IKIKTGAKAKKVEQ--------------------TDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 356677778888777 99999999999976 335677777766 689999999999987
Q ss_pred chh
Q 013625 172 SRV 174 (439)
Q Consensus 172 S~v 174 (439)
..+
T Consensus 272 p~~ 274 (462)
T PRK06416 272 PNT 274 (462)
T ss_pred cCC
Confidence 654
No 135
>PRK09897 hypothetical protein; Provisional
Probab=89.11 E-value=1.3 Score=45.41 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=38.7
Q ss_pred HHHHhhcCC-CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC-CcEEEecEEEEecCC
Q 013625 101 LLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GTSLYAKLVVGADGG 170 (439)
Q Consensus 101 L~~~~~~~~-~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~~~~adlvVgADG~ 170 (439)
|.+.+.+.| .++++.+++|++++. .++++.|++.+ |.++.+|.||.|+|.
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~--------------------~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQI--------------------TNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEE--------------------eCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 344455554 378889999999977 45678888865 478999999999995
No 136
>PRK07804 L-aspartate oxidase; Provisional
Probab=88.97 E-value=1 Score=46.48 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc--eeEEE-----eCCC-cEEEecEEEE
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLD-----LSDG-TSLYAKLVVG 166 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~-----~~dg-~~~~adlvVg 166 (439)
..+.+.|.+.+.+.+ ++|+.++.|+++..+ . ++. ++.+. ..++ ..+.|+.||.
T Consensus 144 ~~i~~~L~~~~~~~g-V~i~~~~~v~~Li~~---------~---------~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIl 204 (541)
T PRK07804 144 AEVQRALDAAVRADP-LDIREHALALDLLTD---------G---------TGAVAGVTLHVLGEGSPDGVGAVHAPAVVL 204 (541)
T ss_pred HHHHHHHHHHHHhCC-CEEEECeEeeeeEEc---------C---------CCeEEEEEEEeccCCCCCcEEEEEcCeEEE
Confidence 568888999998887 999999999999761 0 112 33333 2333 3789999999
Q ss_pred ecCCCchhh
Q 013625 167 ADGGKSRVR 175 (439)
Q Consensus 167 ADG~~S~vR 175 (439)
|+|..|.++
T Consensus 205 ATGG~~~~~ 213 (541)
T PRK07804 205 ATGGLGQLY 213 (541)
T ss_pred CCCCCCCCC
Confidence 999999764
No 137
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.68 E-value=1.6 Score=43.90 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
.++...+.+.+.+.+ ++++.+++|.+++. .++.+.+.+.+|+++.+|.||-|-|....+
T Consensus 207 ~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------------~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 207 DDMRALLARNMEGRG-IRIHPQTSLTSITK--------------------TDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------------cCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 345556777777776 99999999999975 335577788889999999999999986553
No 138
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.60 E-value=1.1 Score=45.70 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
..|-+.|.+.+++.| ++|+++++|..|.. +++.+++++..+|..+.+|.||.+=..
T Consensus 224 ~al~~aL~~~~~~~G-g~I~~~~~V~~I~v-------------------~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHG-GEIRTGAEVSQILV-------------------EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcC-CEEECCCceEEEEE-------------------eCCcceEEeccccceeccceeEecCch
Confidence 788899999999998 99999999999987 123468888888888999998877555
No 139
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=88.51 E-value=0.47 Score=49.25 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC--Cchhhhh
Q 013625 100 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG--KSRVREL 177 (439)
Q Consensus 100 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~--~S~vR~~ 177 (439)
+|...+.+.| ++++.++..+.+.. .+....++|+||+.+.||+||-|+|+ +.-+.+.
T Consensus 192 lL~~~le~~G-i~~~l~~~t~ei~g--------------------~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~ 250 (793)
T COG1251 192 LLRRKLEDLG-IKVLLEKNTEEIVG--------------------EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKE 250 (793)
T ss_pred HHHHHHHhhc-ceeecccchhhhhc--------------------CcceeeEeecCCCcccceeEEEecccccccHhHHh
Confidence 4556666666 99999988888865 45678899999999999999999997 5566666
Q ss_pred hCCCCC
Q 013625 178 AGFKTT 183 (439)
Q Consensus 178 l~~~~~ 183 (439)
.|+...
T Consensus 251 aGlavn 256 (793)
T COG1251 251 AGLAVN 256 (793)
T ss_pred cCcCcC
Confidence 666544
No 140
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=88.43 E-value=2.2 Score=44.17 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=51.6
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEe---CCC--cEEEecEE
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDL---SDG--TSLYAKLV 164 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~---~dg--~~~~adlv 164 (439)
.++-..|...|...+.+.| ++|+.+++|+++.. +++.+ .|.+ .+| .++.|+.|
T Consensus 145 ~vdp~rl~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~d~~~g~~~~i~A~~V 203 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHG-AQILTYHEVTGLIR--------------------EGDTVCGVRVRDHLTGETQEIHAPVV 203 (546)
T ss_pred EECHHHHHHHHHHHHHhCC-CEEEeccEEEEEEE--------------------cCCeEEEEEEEEcCCCcEEEEECCEE
Confidence 4777888888888898887 99999999999976 22332 2443 233 37999999
Q ss_pred EEecCCCch-hhhhhCC
Q 013625 165 VGADGGKSR-VRELAGF 180 (439)
Q Consensus 165 VgADG~~S~-vR~~l~~ 180 (439)
|-|-|.+|. +.+..+.
T Consensus 204 VnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 204 VNAAGIWGQHIAEYADL 220 (546)
T ss_pred EECCChhHHHHHHhcCC
Confidence 999999985 4454443
No 141
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=87.98 E-value=33 Score=34.83 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc--eeEEEeCCC---cEEEecEEEEecCCC
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLDLSDG---TSLYAKLVVGADGGK 171 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~dg---~~~~adlvVgADG~~ 171 (439)
+.+.|.+.+++.| ++|+.+++|++|+.+.+ + ++. ...|.+.+| +++.+|.||-|=..+
T Consensus 221 l~~pl~~~L~~~G-g~i~~~~~V~~I~~~~~---------~-------~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 221 LTKPILEYIEARG-GKFHLRHKVREIKYEKS---------S-------DGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHHHHHCC-CEEECCCEEEEEEEecC---------C-------CCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 4566777888877 89999999999986100 0 011 233445444 568999999998876
Q ss_pred chhhhhh
Q 013625 172 SRVRELA 178 (439)
Q Consensus 172 S~vR~~l 178 (439)
.+++.+
T Consensus 284 -~~~~Ll 289 (474)
T TIGR02732 284 -GIKRLL 289 (474)
T ss_pred -HHHhhC
Confidence 334444
No 142
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=87.98 E-value=1.9 Score=41.95 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=45.8
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++-..+...|.+.+.+..+++|+.+++|++++. . .|.+.+|+ +.||.||-|.|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----------------------~--~v~t~~g~-i~a~~VV~A~G~ 195 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET----------------------G--TVRTSRGD-VHADQVFVCPGA 195 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec----------------------C--eEEeCCCc-EEeCEEEECCCC
Confidence 4666788888988877652399999999999964 2 56666664 689999999999
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
+|.
T Consensus 196 ~s~ 198 (365)
T TIGR03364 196 DFE 198 (365)
T ss_pred Chh
Confidence 874
No 143
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=87.78 E-value=1.8 Score=43.74 Aligned_cols=61 Identities=7% Similarity=0.040 Sum_probs=48.4
Q ss_pred eehHHHHHHHHHHhhcCCCcE--EEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC--c--EEEecEEE
Q 013625 92 VENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--T--SLYAKLVV 165 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~--v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg--~--~~~adlvV 165 (439)
.++.++.+.|.+.+...+ +. |+++++|++++. .++.++|+..++ . +..+|.||
T Consensus 108 p~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~--------------------~~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 108 PSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEP--------------------VDGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEee--------------------cCCeEEEEEEcCCCceEEEEcCEEE
Confidence 467889999999998876 66 999999999976 346678877543 2 46799999
Q ss_pred EecCCCch
Q 013625 166 GADGGKSR 173 (439)
Q Consensus 166 gADG~~S~ 173 (439)
-|.|..+.
T Consensus 167 vAtG~~~~ 174 (461)
T PLN02172 167 VCNGHYTE 174 (461)
T ss_pred EeccCCCC
Confidence 99998754
No 144
>PLN02529 lysine-specific histone demethylase 1
Probab=87.57 E-value=41 Score=36.14 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=29.2
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhh
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 357 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 357 (439)
.||+.+.||+.+...|-+-+| |++++...|+.|...+.
T Consensus 562 ~grL~FAGEaTs~~~pgtVeG---Ai~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATMHG---AFLSGLREASRILHVAR 599 (738)
T ss_pred CCCEEEEEHHHhCCCCeEeHH---HHHHHHHHHHHHHHHHh
Confidence 589999999998887755555 67778877777776654
No 145
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=87.50 E-value=15 Score=37.68 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=52.2
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEe---CCC--cEEEecEE
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDL---SDG--TSLYAKLV 164 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~---~dg--~~~~adlv 164 (439)
.++-..|...|...+.+.| ++|+.+++|+++.. .++.+ .|.+ .+| .++.|+.|
T Consensus 124 ~vdp~~l~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~~~~~g~~~~i~a~~V 182 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHG-ARIFTYTKVTGLIR--------------------EGGRVTGVKVEDHKTGEEERIEAQVV 182 (516)
T ss_pred EECHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------ECCEEEEEEEEEcCCCcEEEEEcCEE
Confidence 5778889999999999998 99999999999976 23332 2443 234 37999999
Q ss_pred EEecCCCchh-hhhhCC
Q 013625 165 VGADGGKSRV-RELAGF 180 (439)
Q Consensus 165 VgADG~~S~v-R~~l~~ 180 (439)
|-|-|.+|.- .+.++.
T Consensus 183 VnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 183 INAAGIWAGRIAEYAGL 199 (516)
T ss_pred EECCCcchHHHHHhcCC
Confidence 9999998863 444454
No 146
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=87.49 E-value=1.9 Score=44.92 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-E---EEeCCCc--EEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-K---LDLSDGT--SLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~---v~~~dg~--~~~adlvVgAD 168 (439)
..+...|.+.+.+.++++++.++.++++.. +++.| . +...+|+ .+.|+.||.|+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~--------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVILAT 191 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLV--------------------DDGRVCGLVAIEMAEGRLVTILADAVVLAT 191 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEe--------------------eCCEEEEEEEEEcCCCcEEEEecCEEEEcC
Confidence 568888998887766699999999999986 12222 2 2345674 78999999999
Q ss_pred CCCchh
Q 013625 169 GGKSRV 174 (439)
Q Consensus 169 G~~S~v 174 (439)
|..|.+
T Consensus 192 GG~~~~ 197 (580)
T TIGR01176 192 GGAGRV 197 (580)
T ss_pred CCCccc
Confidence 999975
No 147
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=87.41 E-value=1.8 Score=46.88 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
+.+.|.+.+.+.| |+|+.+++++++.. ++....|.+.||+++.+|+||-|-|.+..
T Consensus 184 ~~~~l~~~l~~~G-V~v~~~~~v~~i~~--------------------~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 184 AGRLLQRELEQKG-LTFLLEKDTVEIVG--------------------ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHcC-CEEEeCCceEEEEc--------------------CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 3455666777776 99999999999965 33456688899999999999999998643
No 148
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=87.31 E-value=1.6 Score=43.27 Aligned_cols=73 Identities=19% Similarity=0.230 Sum_probs=55.5
Q ss_pred eeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC---C--cEEEecE
Q 013625 89 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKL 163 (439)
Q Consensus 89 ~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g--~~~~adl 163 (439)
|.-|+-..|-+.|.+.+.+.++++++++++|+++.. ..++.+.|...| | .++.|++
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r-------------------~~dg~W~v~~~~~~~~~~~~v~a~F 235 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR-------------------NGDGRWEVKVKDLKTGEKREVRAKF 235 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE-------------------CCCCCEEEEEEecCCCCeEEEECCE
Confidence 445888999999999999997799999999999988 133557776632 3 4899999
Q ss_pred EEEecCCCch-hhhhhCC
Q 013625 164 VVGADGGKSR-VRELAGF 180 (439)
Q Consensus 164 vVgADG~~S~-vR~~l~~ 180 (439)
|+-.-|..|. +-+..|+
T Consensus 236 VfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 236 VFVGAGGGALPLLQKSGI 253 (488)
T ss_pred EEECCchHhHHHHHHcCC
Confidence 8777776665 3455554
No 149
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=87.19 E-value=2.1 Score=42.97 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
..|-+.|.+.+...| .+++.++.|.+|.. + + ++..+.|++.+|+++.|+.||......
T Consensus 232 g~L~qal~r~~a~~G-g~~~L~~~V~~I~~---------~--~-------~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 232 GGLPQAFSRLCAIYG-GTYMLNTPVDEVVF---------D--E-------NGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHHcC-cEEEcCCeEEEEEE---------c--C-------CCeEEEEEECCCcEEECCEEEECcccc
Confidence 467777887777777 79999999999987 0 0 124478999999999999999966654
No 150
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=87.02 E-value=28 Score=34.91 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEe
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGA 167 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgA 167 (439)
.|.+.|.+.+ . ++|+++++|+.+.. +..+..+.+.+|.++.+|-||-+
T Consensus 216 ~l~~al~~~l---~-~~i~~~~~V~~i~~--------------------~~~~~~~~~~~g~~~~~D~VI~t 263 (444)
T COG1232 216 SLIEALAEKL---E-AKIRTGTEVTKIDK--------------------KGAGKTIVDVGGEKITADGVIST 263 (444)
T ss_pred HHHHHHHHHh---h-hceeecceeeEEEE--------------------cCCccEEEEcCCceEEcceEEEc
Confidence 3444444444 3 66999999999988 45678899999999888888865
No 151
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=86.61 E-value=0.89 Score=44.01 Aligned_cols=64 Identities=25% Similarity=0.242 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC--Cc
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG--KS 172 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~--~S 172 (439)
..|-++-.+.++..| |.|+.+..|.++.. ....+.+.+.||.++..|+||.|-|. ||
T Consensus 393 eyls~wt~ekir~~G-V~V~pna~v~sv~~--------------------~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGG-VDVRPNAKVESVRK--------------------CCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcC-ceeccchhhhhhhh--------------------hccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 445555566666665 99999999999987 55779999999999999999999995 77
Q ss_pred hhhhhhC
Q 013625 173 RVRELAG 179 (439)
Q Consensus 173 ~vR~~l~ 179 (439)
-+.+.-|
T Consensus 452 ela~~sg 458 (659)
T KOG1346|consen 452 ELAEASG 458 (659)
T ss_pred hhccccc
Confidence 7766544
No 152
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=86.30 E-value=2.1 Score=44.56 Aligned_cols=61 Identities=20% Similarity=0.115 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCce-eEEE---eCCCc--EEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLD---LSDGT--SLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~---~~dg~--~~~adlvVgAD 168 (439)
..+...|.+.+.+.+ ++|++++.++++.. +++. +.|. ..+|+ .+.|+.||.|+
T Consensus 129 ~~i~~~L~~~~~~~g-v~i~~~~~v~~L~~--------------------~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 187 (566)
T TIGR01812 129 HALLHTLYEQCLKLG-VSFFNEYFALDLIH--------------------DDGRVRGVVAYDLKTGEIVFFRAKAVVLAT 187 (566)
T ss_pred HHHHHHHHHHHHHcC-CEEEeccEEEEEEE--------------------eCCEEEEEEEEECCCCcEEEEECCeEEECC
Confidence 357788888888876 99999999999976 2222 2232 34665 68999999999
Q ss_pred CCCchhhh
Q 013625 169 GGKSRVRE 176 (439)
Q Consensus 169 G~~S~vR~ 176 (439)
|..|.+..
T Consensus 188 GG~~~~~~ 195 (566)
T TIGR01812 188 GGYGRIYK 195 (566)
T ss_pred CcccCCCC
Confidence 99997654
No 153
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.06 E-value=2.4 Score=42.91 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC--CCc--EEEecEEEEecCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DGT--SLYAKLVVGADGG 170 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg~--~~~adlvVgADG~ 170 (439)
.++...|.+.+++.+ ++|+.+++|++++. .+..+.+.+. +|+ ++.+|.||-|-|.
T Consensus 213 ~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------------~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYKKLG-VKILTGTKVESIDD--------------------NGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------------eCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 356777888888876 99999999999975 3344555554 663 7999999999998
Q ss_pred Cchh
Q 013625 171 KSRV 174 (439)
Q Consensus 171 ~S~v 174 (439)
...+
T Consensus 272 ~pn~ 275 (466)
T PRK07818 272 APRV 275 (466)
T ss_pred ccCC
Confidence 7665
No 154
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=85.96 E-value=2.8 Score=42.01 Aligned_cols=62 Identities=16% Similarity=0.008 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCCCc
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS 172 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S 172 (439)
..+.+.|.+.+.+.+ ++|+++++|+++..+ ++ + .-.++.+...+++ .+.++.||-|.|..|
T Consensus 130 ~~l~~~l~~~~~~~g-v~i~~~~~v~~l~~~---------~~--g-----~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEG-IDTRLNSKVEDLIQD---------DQ--G-----TVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEeeEeEEC---------CC--C-----cEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 568888999999887 999999999999861 00 0 1123444444554 578999999999888
Q ss_pred h
Q 013625 173 R 173 (439)
Q Consensus 173 ~ 173 (439)
.
T Consensus 193 ~ 193 (439)
T TIGR01813 193 S 193 (439)
T ss_pred C
Confidence 7
No 155
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=85.76 E-value=3.1 Score=42.37 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
.++.+.+.+.+++.+ ++++++++|+++.. +.++.+.+.+.+|+++.+|.||-|-|.....
T Consensus 231 ~~~~~~l~~~L~~~G-I~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 231 STLRKELTKQLRANG-INIMTNENPAKVTL-------------------NADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHHHHcC-CEEEcCCEEEEEEE-------------------cCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 456677788888776 99999999999975 0123366777888899999999999987665
Q ss_pred h
Q 013625 175 R 175 (439)
Q Consensus 175 R 175 (439)
.
T Consensus 291 ~ 291 (486)
T TIGR01423 291 Q 291 (486)
T ss_pred c
Confidence 4
No 156
>PTZ00052 thioredoxin reductase; Provisional
Probab=85.63 E-value=3.1 Score=42.52 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchhh
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 175 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 175 (439)
+.+.+.+.+++.| ++++.++++.+++. .++.+.+.+.+|+++.+|.||-|=|....+.
T Consensus 224 ~~~~l~~~l~~~G-V~i~~~~~v~~v~~--------------------~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 224 CSEKVVEYMKEQG-TLFLEGVVPINIEK--------------------MDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred HHHHHHHHHHHcC-CEEEcCCeEEEEEE--------------------cCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 4567777777776 99999999999975 2345677888899999999999999877654
No 157
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=85.13 E-value=2.8 Score=41.89 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
.+...+.+.+.+.| ++++++++|.++.. + +.+ +.+.+|+++.+|.||-|-|.+..
T Consensus 180 ~~~~~~~~~l~~~g-V~v~~~~~v~~i~~--------------------~-~~~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 180 EMNQIVEEELKKHE-INLRLNEEVDSIEG--------------------E-ERV-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHHHHHHHHHHHcC-CEEEeCCEEEEEec--------------------C-CCE-EEEcCCCEEEeCEEEECCCccCC
Confidence 45566777777776 99999999999965 2 223 56678999999999999998654
No 158
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=85.13 E-value=4 Score=34.38 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=30.7
Q ss_pred cCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 115 YPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 115 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
...+|+++.. .+++..|.+.||.++.+|.||-|-|.
T Consensus 120 ~~~~V~~i~~--------------------~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 120 VRAEVVDIRR--------------------DDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EeeEEEEEEE--------------------cCCcEEEEECCCCEEEeCEEEECCCC
Confidence 3559999987 55668899999999999999999984
No 159
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=85.01 E-value=3 Score=41.65 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCc
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 172 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 172 (439)
.+.+.+.+.+.+.+ |+|+.+++|+++.. + .|.++||+++.+|+||-|-|...
T Consensus 229 ~~~~~~~~~L~~~g-V~v~~~~~v~~v~~----------------------~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLG-VDIRTKTAVKEVLD----------------------K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCC-CEEEeCCeEEEEeC----------------------C--EEEECCCCEEEccEEEEccCCCC
Confidence 56777788888887 99999999999954 3 35678999999999999999643
No 160
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=84.42 E-value=3 Score=42.32 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC--C--cEEEecEEEEecCCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD--G--TSLYAKLVVGADGGK 171 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d--g--~~~~adlvVgADG~~ 171 (439)
++...+.+.+.+.+ ++|+.+++|++++. ++..+.+.+.+ | .++.+|.||-|-|..
T Consensus 225 ~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 225 QVAKEAAKAFTKQG-LDIHLGVKIGEIKT--------------------GGKGVSVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHcC-cEEEeCcEEEEEEE--------------------cCCEEEEEEEeCCCceeEEEcCEEEEccCCc
Confidence 45666777777776 99999999999976 33456666654 3 479999999999987
Q ss_pred chhh
Q 013625 172 SRVR 175 (439)
Q Consensus 172 S~vR 175 (439)
..+.
T Consensus 284 p~~~ 287 (475)
T PRK06327 284 PNTD 287 (475)
T ss_pred cCCC
Confidence 7643
No 161
>PLN02487 zeta-carotene desaturase
Probab=84.40 E-value=56 Score=34.05 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCcEEEecEEEEecCCCch
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~~~~adlvVgADG~~S~ 173 (439)
|-.-+.+.+++.| ++|+++++|.+|+.+ .++++ ......|.+ .+++++.+|.||-|=+.. .
T Consensus 297 l~~pl~~~L~~~G-g~V~l~~~V~~I~~~---------~~~~g-----~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~-~ 360 (569)
T PLN02487 297 LSGPIAKYITDRG-GRFHLRWGCREILYD---------KSPDG-----ETYVTGLKVSKATEKEIVKADAYVAACDVP-G 360 (569)
T ss_pred HHHHHHHHHHHcC-CEEEeCCceEEEEEe---------cCCCC-----ceeEEEEEEecCCCceEEECCEEEECCCHH-H
Confidence 5566677777887 899999999999871 10000 001234555 334578999999999977 4
Q ss_pred hhhhh
Q 013625 174 VRELA 178 (439)
Q Consensus 174 vR~~l 178 (439)
+.+.+
T Consensus 361 ~~~Ll 365 (569)
T PLN02487 361 IKRLL 365 (569)
T ss_pred HHHhC
Confidence 45554
No 162
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=84.28 E-value=4.1 Score=41.16 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC-cEEEecEEEEecCCCch
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSR 173 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgADG~~S~ 173 (439)
.++.+.|.+.+.+.+ ++|+++++|++++. .+..+.+...++ .++.+|+||-|.|....
T Consensus 211 ~e~~~~l~~~L~~~G-I~i~~~~~V~~i~~--------------------~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDG-VKIFTGAALKGLNS--------------------YKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------------cCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 356677788888776 99999999999975 223444443322 37999999999998776
Q ss_pred h
Q 013625 174 V 174 (439)
Q Consensus 174 v 174 (439)
+
T Consensus 270 ~ 270 (458)
T PRK06912 270 V 270 (458)
T ss_pred C
Confidence 5
No 163
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=83.80 E-value=4.4 Score=40.68 Aligned_cols=58 Identities=7% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
..+.+.|.+.+++.+ ++++++++|.+++. +++.+.+..++| ++.+|.||-|-|.....
T Consensus 199 ~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~--------------------~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQG-VDIILNAHVERISH--------------------HENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------cCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 456667777888776 99999999999976 335566766665 58899999999987654
No 164
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=83.57 E-value=3.8 Score=44.76 Aligned_cols=58 Identities=10% Similarity=0.140 Sum_probs=45.3
Q ss_pred HHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 98 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 98 ~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
...|.+.+.+.| |+|+.+++++++.. +. .+....+.+.||+++.+|+||-|-|.+...
T Consensus 190 ~~~l~~~L~~~G-V~v~~~~~v~~I~~---------~~---------~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 190 GEQLRRKIESMG-VRVHTSKNTLEIVQ---------EG---------VEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHHCC-CEEEcCCeEEEEEe---------cC---------CCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 456777777777 99999999999964 00 124567888999999999999999986553
No 165
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=83.22 E-value=4.5 Score=40.77 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC-cEEEecEEEEecCCCchh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgADG~~S~v 174 (439)
.+...+.+.+.+.+ ++++.+++|++++. +.++.+.+.+++| +++.+|.||-|=|....+
T Consensus 208 ~~~~~~~~~l~~~g-I~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 208 MISETITEEYEKEG-INVHKLSKPVKVEK-------------------TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHHHHHHHHcC-CEEEcCCEEEEEEE-------------------eCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 45667777777776 99999999999975 0123367788888 579999999999987665
No 166
>PRK07846 mycothione reductase; Reviewed
Probab=83.19 E-value=4.6 Score=40.67 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
+.+.|.+. .+.+ ++++.+++|++++. +++.+.+.+.+|+++.+|.||-|-|.+..+
T Consensus 209 ~~~~l~~l-~~~~-v~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 209 ISERFTEL-ASKR-WDVRLGRNVVGVSQ--------------------DGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HHHHHHHH-HhcC-eEEEeCCEEEEEEE--------------------cCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 33444332 3444 99999999999976 335678888889999999999999987664
No 167
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=83.04 E-value=3.9 Score=41.03 Aligned_cols=54 Identities=7% Similarity=0.162 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
++...+.+.+.+.+ ++++++++|++++. . .+.+++|+++.+|+||-|-|.+...
T Consensus 190 ~~~~~l~~~l~~~g-I~i~~~~~v~~i~~----------------------~--~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 190 DMNQPILDELDKRE-IPYRLNEEIDAING----------------------N--EVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred HHHHHHHHHHHhcC-CEEEECCeEEEEeC----------------------C--EEEECCCCEEEeCEEEECcCCCcCh
Confidence 45567777787776 99999999999953 2 4667788899999999999986543
No 168
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=82.50 E-value=3.9 Score=39.75 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCc
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 172 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 172 (439)
.+...+.+.+.+.+ |+++.+++|.++.. + .+.+++|.++.+|+||-|-|...
T Consensus 192 ~~~~~~~~~l~~~g-V~v~~~~~v~~i~~----------------------~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRG-IEVHEGAPVTRGPD----------------------G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCC-CEEEeCCeeEEEcC----------------------C--eEEeCCCCEEecCEEEEccCCCh
Confidence 45667777787776 99999999998854 3 46778899999999999999754
No 169
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=82.19 E-value=4.4 Score=41.02 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC---CC--cEEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DG--TSLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg--~~~~adlvVgADG 169 (439)
.++...|.+.+.+.+ ++|+.+++|.+++. +++.+.+.+. +| +++.+|.||-|-|
T Consensus 215 ~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------------~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 215 TETAKTLQKALTKQG-MKFKLGSKVTGATA--------------------GADGVSLTLEPAAGGAAETLQADYVLVAIG 273 (466)
T ss_pred HHHHHHHHHHHHhcC-CEEEECcEEEEEEE--------------------cCCeEEEEEEEcCCCceeEEEeCEEEEccC
Confidence 356777888888876 99999999999975 2344555442 23 5799999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
....+
T Consensus 274 ~~pn~ 278 (466)
T PRK06115 274 RRPYT 278 (466)
T ss_pred Ccccc
Confidence 87654
No 170
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=82.17 E-value=7.8 Score=38.59 Aligned_cols=102 Identities=11% Similarity=0.069 Sum_probs=56.5
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEeeCHhHHHHHHHCCCch-hhhhhhcCccceEEEEeCCCcceeEEeccC
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ-YVQQHRHAYFDKMQVWDYTGLGYTKYNARD 82 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~L~~lGl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (439)
..|++|+|+|+++...+... .....-......+..+..+++..|++. ++...+ ...+...+.. .
T Consensus 21 r~G~~V~LiE~rp~~~~p~~--~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg-----~l~~~~ad~~--------~ 85 (433)
T TIGR00137 21 QAGVPVILYEMRPEKLTPAH--HTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLS-----SLIITAADRH--------A 85 (433)
T ss_pred hCCCcEEEEeccccccCchh--hhhhhhhhcccccccchhHHhccCcHHHHHhhcC-----eeeeehhhhh--------C
Confidence 46999999999887422110 000000122334445677888888764 332222 1111111110 1
Q ss_pred CCCccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEe
Q 013625 83 VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 122 (439)
Q Consensus 83 ~~~~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i 122 (439)
+. ...++.++|..+.+.|.+.+.+.+++++. ...|.++
T Consensus 86 Ip-agg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL 123 (433)
T TIGR00137 86 VP-AGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEI 123 (433)
T ss_pred CC-CCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEE
Confidence 11 11246789999999999999988877766 5566655
No 171
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=82.00 E-value=5.1 Score=40.19 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
..+.+.|.+.+++.+ ++|+.+++|+++.. ++....+..+ +.++.+|+||-|-|....
T Consensus 191 ~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------------~~~~~~v~~~-~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENG-VELHLNEFVKSLIG--------------------EDKVEGVVTD-KGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCEEEEEec--------------------CCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence 456667777888877 99999999999954 2233334444 457999999999998643
No 172
>PRK14694 putative mercuric reductase; Provisional
Probab=81.92 E-value=5.5 Score=40.34 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
.++...+.+.+++.| ++++.+++|.+++. +++.+.+.+.++ ++.+|.||-|-|.....
T Consensus 218 ~~~~~~l~~~l~~~G-I~v~~~~~v~~i~~--------------------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 PAVGEAIEAAFRREG-IEVLKQTQASEVDY--------------------NGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------cCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 456777888888776 99999999999976 334556666544 69999999999987765
No 173
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=81.89 E-value=5.8 Score=39.84 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCCCc
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS 172 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S 172 (439)
.++.+.|.+.+.+. .++++.+++|+.++. .++++.+++++|. ++++|.|+-|=|+.-
T Consensus 214 ~ei~~~~~~~l~~~-gv~i~~~~~v~~~~~--------------------~~~~v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 214 PEISKELTKQLEKG-GVKILLNTKVTAVEK--------------------KDDGVLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHHHHHHHhC-CeEEEccceEEEEEe--------------------cCCeEEEEEecCCCCEEEeeEEEEccCCcc
Confidence 67888888888884 499999999999986 3344999999887 799999999999765
Q ss_pred hhh
Q 013625 173 RVR 175 (439)
Q Consensus 173 ~vR 175 (439)
.+-
T Consensus 273 n~~ 275 (454)
T COG1249 273 NTD 275 (454)
T ss_pred CCC
Confidence 443
No 174
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.79 E-value=5.7 Score=39.78 Aligned_cols=62 Identities=8% Similarity=0.046 Sum_probs=50.2
Q ss_pred eeeehHHHHHHHHHHhhcCC-CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC-ceeEEEeCCC----cEEEecE
Q 013625 90 CVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDG----TSLYAKL 163 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~-~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~dg----~~~~adl 163 (439)
+..++.++.+.|.+-|++.+ ...|+++++|..+.. .. +.+.|.+.++ ....+|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--------------------~~~gkW~V~~~~~~~~~~~~ifd~ 144 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS--------------------IDKGKWRVTTKDNGTQIEEEIFDA 144 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEee--------------------ccCCceeEEEecCCcceeEEEeeE
Confidence 44667799999999999874 237999999999976 33 6788888665 3778999
Q ss_pred EEEecCCC
Q 013625 164 VVGADGGK 171 (439)
Q Consensus 164 vVgADG~~ 171 (439)
||.|.|-+
T Consensus 145 VvVctGh~ 152 (448)
T KOG1399|consen 145 VVVCTGHY 152 (448)
T ss_pred EEEcccCc
Confidence 99999988
No 175
>PRK06370 mercuric reductase; Validated
Probab=81.17 E-value=6.1 Score=39.93 Aligned_cols=58 Identities=7% Similarity=0.070 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe--CC-CcEEEecEEEEecCCCc
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SD-GTSLYAKLVVGADGGKS 172 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~d-g~~~~adlvVgADG~~S 172 (439)
++.+.+.+.+++.+ ++++++++|.+++. .++.+.+.+ .+ +.++.+|.||-|-|...
T Consensus 213 ~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 213 DVAAAVREILEREG-IDVRLNAECIRVER--------------------DGDGIAVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------cCCEEEEEEEeCCCceEEEeCEEEECcCCCc
Confidence 45667777787776 99999999999976 223344443 33 45899999999999765
Q ss_pred hh
Q 013625 173 RV 174 (439)
Q Consensus 173 ~v 174 (439)
..
T Consensus 272 n~ 273 (463)
T PRK06370 272 NT 273 (463)
T ss_pred CC
Confidence 54
No 176
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=81.16 E-value=22 Score=33.98 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=54.9
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccc-cCceeEEEeCCCc--EEEecEEEEec
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFT-KGHLAKLDLSDGT--SLYAKLVVGAD 168 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~--~~~adlvVgAD 168 (439)
++--.|.+.+.+.+...| +.+..| +|++++...+.. ++.-.+...+.... .=.++.|...|+. +++++++|-|-
T Consensus 240 fdpw~LLs~~rrk~~~lG-v~f~~G-eV~~Fef~sqr~-v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aA 316 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLG-VQFVKG-EVVGFEFESQRA-VHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAA 316 (509)
T ss_pred cCHHHHHHHHHHHhhhhc-ceEecc-eEEEEEEecccc-eeeecccchhhhhhcccceeEEecCchhcCceeEEEEEecc
Confidence 566677888899998887 777655 899998732221 11111111000000 1145777777774 89999999999
Q ss_pred CCCch-hhhhhCCC
Q 013625 169 GGKSR-VRELAGFK 181 (439)
Q Consensus 169 G~~S~-vR~~l~~~ 181 (439)
|++|- |.+..|+.
T Consensus 317 Ga~s~QvArlAgIG 330 (509)
T KOG2853|consen 317 GAWSGQVARLAGIG 330 (509)
T ss_pred CccHHHHHHHhccC
Confidence 99985 56666655
No 177
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=80.57 E-value=6.1 Score=39.34 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE-eCCCc--EEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~dg~--~~~adlvVgADG~~ 171 (439)
.++.+.|.+.+++.| ++|+.+++|++++. .++.+.+. ..+|. ++.+|.||-|-|..
T Consensus 259 ~rL~~aL~~~l~~~G-v~I~~g~~V~~v~~--------------------~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLG-GRIMPGDEVLGAEF--------------------EGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 468889999998887 99999999999986 33445443 34553 68999999999964
No 178
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=80.36 E-value=7 Score=39.41 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
+...|.+. .+.+ ++++.+++|.+++. +++.+.+.+.+|+++.+|.||-|-|.+...
T Consensus 212 ~~~~l~~~-~~~g-I~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 212 ISDRFTEI-AKKK-WDIRLGRNVTAVEQ--------------------DGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HHHHHHHH-HhcC-CEEEeCCEEEEEEE--------------------cCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 33444433 3344 99999999999976 335577888888899999999999976543
No 179
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=80.25 E-value=7 Score=39.81 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC---cEEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg---~~~~adlvVgADG~~ 171 (439)
.++...+.+.+++.+ ++|+.++.++++.. .++.+.|.+.+| .++.+|.||-|=|..
T Consensus 220 ~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------------~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 220 QDCANKVGEHMEEHG-VKFKRQFVPIKVEQ--------------------IEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCceEEEEEE--------------------cCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 345566777777776 99999999999975 234566777665 379999999999976
Q ss_pred chh
Q 013625 172 SRV 174 (439)
Q Consensus 172 S~v 174 (439)
..+
T Consensus 279 pn~ 281 (484)
T TIGR01438 279 ACT 281 (484)
T ss_pred cCC
Confidence 543
No 180
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=80.03 E-value=6.2 Score=39.62 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCC-CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcE--EEecEEEEecCCCch
Q 013625 97 LHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS--LYAKLVVGADGGKSR 173 (439)
Q Consensus 97 l~~~L~~~~~~~~-~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~--~~adlvVgADG~~S~ 173 (439)
+...+.+.+.+.+ ..+|++++.|..+.. + +++...+|+.++|.+ +.+|.||-|.|..|.
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~-----------~-------~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADW-----------D-------EDTKRWTVTTSDGGTGELTADFVVVATGHLSE 145 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEe-----------c-------CCCCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence 5555555555442 247788888888766 1 134689999998875 559999999998554
No 181
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=79.64 E-value=7.7 Score=38.86 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
..+...+.+.+++.+ ++++.+++|++++. ++..+.+.. +|+++.+|.||-|-|.....
T Consensus 198 ~~~~~~~~~~l~~~G-I~i~~~~~V~~i~~--------------------~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 198 PSVAALAKQYMEEDG-ITFLLNAHTTEVKN--------------------DGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHHcC-CEEEcCCEEEEEEe--------------------cCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 456677777777776 99999999999975 334455543 56789999999999987653
No 182
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=79.63 E-value=6.5 Score=39.70 Aligned_cols=58 Identities=7% Similarity=0.181 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC--C-CcEEEecEEEEecCCCc
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--D-GTSLYAKLVVGADGGKS 172 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--d-g~~~~adlvVgADG~~S 172 (439)
++...+.+.+.+.+ ++++++++|++++. +++.+.+.+. + +.++.+|.||-|-|...
T Consensus 208 ~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 208 EISAAVEEALAEEG-IEVVTSAQVKAVSV--------------------RGGGKIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------cCCEEEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 45566777777776 99999999999976 2234445543 2 35899999999999766
Q ss_pred hh
Q 013625 173 RV 174 (439)
Q Consensus 173 ~v 174 (439)
..
T Consensus 267 ~~ 268 (463)
T TIGR02053 267 NT 268 (463)
T ss_pred CC
Confidence 54
No 183
>PRK14727 putative mercuric reductase; Provisional
Probab=79.34 E-value=7 Score=39.73 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchhh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 175 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 175 (439)
.+...|.+.+++.+ ++++.+++|++++. +++.+.+.+.++ ++.+|.||-|-|....+.
T Consensus 229 ~~~~~l~~~L~~~G-V~i~~~~~V~~i~~--------------------~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 229 LLGETLTACFEKEG-IEVLNNTQASLVEH--------------------DDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHHHHHHhCC-CEEEcCcEEEEEEE--------------------eCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 45566777777776 99999999999975 335566776665 588999999999987653
No 184
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=79.28 E-value=5.6 Score=39.29 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=34.1
Q ss_pred cEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEe
Q 013625 111 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGA 167 (439)
Q Consensus 111 v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgA 167 (439)
-.|+++.+|.+|.+ ++++|+|++.+..++.+|++|.+
T Consensus 221 ~~I~~~~~V~rI~q--------------------~~~gV~Vt~~~~~~~~ad~~i~t 257 (450)
T COG1231 221 TRILLNEPVRRIDQ--------------------DGDGVTVTADDVGQYVADYVLVT 257 (450)
T ss_pred ceEEecCceeeEEE--------------------cCCeEEEEeCCcceEEecEEEEe
Confidence 68999999999998 77999999999789999999987
No 185
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=79.18 E-value=5.5 Score=40.61 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc-eeEEEeCCC-----cEEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSDG-----TSLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~dg-----~~~~adlvVgAD 168 (439)
..|-..|.+.+++.| ++|+++++|++|.. +++ ...+...+| +++.||.||-+=
T Consensus 232 ~~l~~aL~~~~~~~G-~~i~~~~~V~~I~~--------------------~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~ 290 (492)
T TIGR02733 232 QTLSDRLVEALKRDG-GNLLTGQRVTAIHT--------------------KGGRAGWVVVVDSRKQEDLNVKADDVVANL 290 (492)
T ss_pred HHHHHHHHHHHHhcC-CEEeCCceEEEEEE--------------------eCCeEEEEEEecCCCCceEEEECCEEEECC
Confidence 567788888888877 89999999999987 222 223444343 578999988876
Q ss_pred CCC
Q 013625 169 GGK 171 (439)
Q Consensus 169 G~~ 171 (439)
..+
T Consensus 291 ~~~ 293 (492)
T TIGR02733 291 PPQ 293 (492)
T ss_pred CHH
Confidence 653
No 186
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=79.01 E-value=6.8 Score=39.41 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc-----EEEecEEEEecCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-----SLYAKLVVGADGG 170 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~-----~~~adlvVgADG~ 170 (439)
.|-+.|.+.+.+.| ++|+.|+.|++|+. .. ++..+.|.+.+|+ ++.||-||-|-..
T Consensus 214 ~l~~~l~~~l~~~g-~~i~l~~~V~~I~~---------~~---------~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 214 RLCQPIVDYITSRG-GEVRLNSRLKEIVL---------NE---------DGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHhcC-CEEeCCCeeEEEEE---------CC---------CCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45567777777776 89999999999975 00 1123456666655 7899999998876
Q ss_pred Cchhhhhh
Q 013625 171 KSRVRELA 178 (439)
Q Consensus 171 ~S~vR~~l 178 (439)
+. +++.+
T Consensus 275 ~~-~~~lL 281 (453)
T TIGR02731 275 DI-FKLLL 281 (453)
T ss_pred HH-HHhhC
Confidence 54 55555
No 187
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=78.80 E-value=8.5 Score=39.44 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc---eeEEEeCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH---LAKLDLSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~v~~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ ++|+++++|+++.. +++ ++.+...+|+ ++.++.||-|.|
T Consensus 190 ~~l~~~L~~~~~~~g-v~i~~~t~v~~l~~--------------------~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 190 GYLVDGLLKNVQERK-IPLFVNADVTKITE--------------------KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHHcC-CeEEeCCeeEEEEe--------------------cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 356777888888876 99999999999976 222 3444445543 789999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.-
T Consensus 249 G~~~n 253 (506)
T PRK06481 249 GFGAN 253 (506)
T ss_pred CcccC
Confidence 77653
No 188
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=78.43 E-value=7 Score=41.04 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=45.6
Q ss_pred ehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEE---EeCCCc--EEEecEEEEe
Q 013625 93 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL---DLSDGT--SLYAKLVVGA 167 (439)
Q Consensus 93 ~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~dg~--~~~adlvVgA 167 (439)
.-..+.+.|.+.+++.++++|+.++.|+++..+ ++..+.| ...+|+ ++.|+.||-|
T Consensus 130 ~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-------------------~g~v~Gv~~~~~~~g~~~~i~AkaVILA 190 (608)
T PRK06854 130 NGESYKPIVAEAAKKALGDNVLNRVFITDLLVD-------------------DNRIAGAVGFSVRENKFYVFKAKAVIVA 190 (608)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-------------------CCEEEEEEEEEccCCcEEEEECCEEEEC
Confidence 345788889888888766999999999999750 1122222 234554 7899999999
Q ss_pred cCCCch
Q 013625 168 DGGKSR 173 (439)
Q Consensus 168 DG~~S~ 173 (439)
.|..+.
T Consensus 191 TGG~~~ 196 (608)
T PRK06854 191 TGGAAG 196 (608)
T ss_pred CCchhh
Confidence 998775
No 189
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=78.30 E-value=7.6 Score=40.51 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCce--eE-EEeCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL--AK-LDLSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--v~-v~~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ |+|+.++.|+++..+ ++.. +. +...+|+ .+.|+.||.|.|
T Consensus 135 ~~i~~~L~~~~~~~g-i~i~~~t~v~~L~~~-------------------~g~v~Gv~~~~~~~g~~~~i~AkaVVlATG 194 (575)
T PRK05945 135 HAILHELVNNLRRYG-VTIYDEWYVMRLILE-------------------DNQAKGVVMYHIADGRLEVVRAKAVMFATG 194 (575)
T ss_pred HHHHHHHHHHHhhCC-CEEEeCcEEEEEEEE-------------------CCEEEEEEEEEcCCCeEEEEECCEEEECCC
Confidence 467788888888765 999999999999760 1122 22 2345664 689999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 195 G~~~~ 199 (575)
T PRK05945 195 GYGRV 199 (575)
T ss_pred CCcCC
Confidence 99875
No 190
>PRK06175 L-aspartate oxidase; Provisional
Probab=77.71 E-value=8.7 Score=38.48 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE-eCCCc--EEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~dg~--~~~adlvVgADG~~ 171 (439)
..+.+.|.+.+.+..+|+|+++++|+++..+ ++..+.|. ..++. ++.|+-||-|.|..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-------------------~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-------------------DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-------------------CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4577888888876545999999999999760 11222222 23443 68999999999987
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
+.
T Consensus 189 ~~ 190 (433)
T PRK06175 189 GG 190 (433)
T ss_pred cc
Confidence 64
No 191
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.68 E-value=6.6 Score=40.97 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEE---EeCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL---DLSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+..+++|+.++.++++..+ ++..+.+ ...+|+ .+.|+.||-|+|
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-------------------~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-------------------NGVFKGVTAIDLKRGEFKVFQAKAGIIATG 197 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-------------------CCEEEEEEEEEcCCCeEEEEECCcEEEcCc
Confidence 3477788888876545999999999999760 1122222 335665 689999999999
Q ss_pred CCchhhh
Q 013625 170 GKSRVRE 176 (439)
Q Consensus 170 ~~S~vR~ 176 (439)
..+.+..
T Consensus 198 G~~~~~~ 204 (577)
T PRK06069 198 GAGRLYG 204 (577)
T ss_pred hhcccCC
Confidence 9986543
No 192
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=77.53 E-value=7 Score=39.49 Aligned_cols=59 Identities=25% Similarity=0.315 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe--CCC--cEEEecEEEEecCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDG--TSLYAKLVVGADGG 170 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg--~~~~adlvVgADG~ 170 (439)
..+...|.+.+.+.+ ++|+++++|+++..+ ++..+.|.. .+| .++.++.||-|.|.
T Consensus 131 ~~l~~~l~~~~~~~g-v~i~~~t~v~~l~~~-------------------~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLG-VEIRYDAPVTALELD-------------------DGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCEEEEEEec-------------------CCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 567788888888886 999999999999760 112233443 344 36899999999997
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
.+.
T Consensus 191 ~~~ 193 (466)
T PRK08274 191 FES 193 (466)
T ss_pred CCC
Confidence 654
No 193
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=76.64 E-value=9.8 Score=39.17 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=50.0
Q ss_pred eeehHHHHHHHHHHhhcCCC-cEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC-Cc--EEEecEEEE
Q 013625 91 VVENKVLHSSLLSCMQNTEF-QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GT--SLYAKLVVG 166 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~-v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~--~~~adlvVg 166 (439)
..++.++.+.|.+.+...+= -.|+++++|++++..++.+ ..+..+|+.++ |+ +..+|.||-
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~---------------~~~~W~V~~~~~g~~~~~~fD~Vvv 144 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFS---------------ATGKWEVTTENDGKEETEEFDAVVV 144 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT----------------ETEEEEEETTTTEEEEEEECEEEE
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccC---------------CCceEEEEeecCCeEEEEEeCeEEE
Confidence 47899999999999987641 3799999999998722111 12568888754 43 567899999
Q ss_pred ecCCCch
Q 013625 167 ADGGKSR 173 (439)
Q Consensus 167 ADG~~S~ 173 (439)
|-|.++.
T Consensus 145 atG~~~~ 151 (531)
T PF00743_consen 145 ATGHFSK 151 (531)
T ss_dssp EE-SSSC
T ss_pred cCCCcCC
Confidence 9999884
No 194
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=74.96 E-value=12 Score=39.20 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc--eeEEEeCCCc-EEEe-cEEEEecCCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLDLSDGT-SLYA-KLVVGADGGK 171 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~dg~-~~~a-dlvVgADG~~ 171 (439)
.|.+.|.+.+.+.| ++|+++++|+++..+ ++. +|.+...++. ++.+ +.||-|-|..
T Consensus 218 ~l~~~L~~~a~~~G-v~i~~~t~v~~l~~~-------------------~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 218 ALVARLLKSAEDLG-VRIWESAPARELLRE-------------------DGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHhCC-CEEEcCCEEEEEEEe-------------------CCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 46678889998887 999999999999760 122 2333334444 6889 8888888887
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
+.
T Consensus 278 ~~ 279 (581)
T PRK06134 278 PH 279 (581)
T ss_pred cc
Confidence 74
No 195
>PRK07121 hypothetical protein; Validated
Probab=74.18 E-value=12 Score=38.10 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCc--EEEe-cEEEEecCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYA-KLVVGADGG 170 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~a-dlvVgADG~ 170 (439)
..+...|.+.+++.+ ++|+++++|+++..+ . ++..+.|... ++. ++.+ +.||-|.|.
T Consensus 177 ~~~~~~L~~~~~~~g-v~i~~~~~v~~l~~~---------~---------~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALG-VQIRYDTRATRLIVD---------D---------DGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEEC---------C---------CCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 467888999998886 999999999999861 0 1123334332 333 6889 999999998
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
.+.
T Consensus 238 ~~~ 240 (492)
T PRK07121 238 FAM 240 (492)
T ss_pred cCc
Confidence 875
No 196
>PRK08401 L-aspartate oxidase; Provisional
Probab=73.98 E-value=10 Score=38.30 Aligned_cols=59 Identities=25% Similarity=0.153 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEeCCCcEEEecEEEEecCCCch
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
..+.+.|.+.+.+.+ ++++.+ .++.+.. +++.+ .+.. +|..+.++-||-|.|..|.
T Consensus 120 ~~i~~~L~~~~~~~g-v~i~~~-~v~~l~~--------------------~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELG-VNFIRG-FAEELAI--------------------KNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcC-CEEEEe-EeEEEEe--------------------eCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 468888999888876 899876 7888865 22333 3444 5678999999999999998
Q ss_pred hhh
Q 013625 174 VRE 176 (439)
Q Consensus 174 vR~ 176 (439)
...
T Consensus 177 ~~~ 179 (466)
T PRK08401 177 LFK 179 (466)
T ss_pred CCC
Confidence 654
No 197
>PRK13748 putative mercuric reductase; Provisional
Probab=73.71 E-value=13 Score=38.68 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
++...|.+.+++.| ++|+.+++|++++. +++.+.+.+.++ ++.+|.||-|-|.....
T Consensus 311 ~~~~~l~~~l~~~g-I~i~~~~~v~~i~~--------------------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 311 AIGEAVTAAFRAEG-IEVLEHTQASQVAH--------------------VDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 45566777777776 99999999999975 335566766665 69999999999976554
No 198
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=73.63 E-value=20 Score=33.86 Aligned_cols=76 Identities=18% Similarity=0.067 Sum_probs=51.2
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++++.+..-+-+.-.+.+ .++..+-+|.++.+ +.+ ...+..++|.-..|++++..+||.|-|.
T Consensus 192 IvD~~~v~ls~~edF~~~g-g~i~~n~~l~g~~~---------n~~------~~~~Ypivv~ngk~ee~r~~~~vtc~gl 255 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMG-GRIYTNFRLQGIAQ---------NKE------ATFSYPIVVLNGKGEEKRTKNVVTCAGL 255 (453)
T ss_pred eeehHHHHHHHHHHHHHhc-ccccccceeccchh---------ccC------CCCCCceEEecCccceeEEeEEEEeccc
Confidence 4777777777777777776 68999999999976 111 0122344454444789999999999998
Q ss_pred Cchhhh-hhCCCC
Q 013625 171 KSRVRE-LAGFKT 182 (439)
Q Consensus 171 ~S~vR~-~l~~~~ 182 (439)
.|.-=. .-|...
T Consensus 256 ~sdr~aa~sgc~~ 268 (453)
T KOG2665|consen 256 QSDRCAALSGCEL 268 (453)
T ss_pred cHhHHHHHhCCCC
Confidence 775433 334433
No 199
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=73.03 E-value=10 Score=37.72 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
..+.+.+.+...+.+ |++..++.+.+++. ++ .+....|.+.||+++.||+||-.=|+.+.+
T Consensus 255 ~~i~~~~~~y~e~kg-Vk~~~~t~~s~l~~---------~~---------~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKG-VKFYLGTVVSSLEG---------NS---------DGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HHHHHHHHHHHHhcC-eEEEEecceeeccc---------CC---------CCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 667777777788887 99999999999976 11 347788999999999999999999987654
No 200
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=72.49 E-value=15 Score=37.28 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCCCch
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 173 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~ 173 (439)
.+.+.+.+.+.+.| ++++.+++|++++. .+ .+....+.+.+|+ ++.+|.||-|-|....
T Consensus 222 ~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------~~---------~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 222 ELSKEVARLLKKLG-VRVVTGAKVLGLTL---------KK---------DGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHHHHHHhcC-CEEEeCcEEEEEEE---------ec---------CCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 35566777777776 99999999999963 00 1122334456664 7999999999998765
Q ss_pred h
Q 013625 174 V 174 (439)
Q Consensus 174 v 174 (439)
+
T Consensus 283 ~ 283 (472)
T PRK05976 283 T 283 (472)
T ss_pred C
Confidence 4
No 201
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=71.80 E-value=11 Score=37.35 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=44.4
Q ss_pred ehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEEEe
Q 013625 93 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGA 167 (439)
Q Consensus 93 ~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgA 167 (439)
.-..+...|.+.+++.+ ++|+++++++++..+ ++..+.+.. .+|+ ++.|+-||-|
T Consensus 139 ~g~~~~~~l~~~~~~~g-v~i~~~~~~~~Li~e-------------------~g~V~Gv~~~~~~~g~~~~i~A~aVIlA 198 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAG-VDIRFNTRVTDLITE-------------------DGRVTGVVAENPADGEFVRIKAKAVILA 198 (417)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEESEEEEEEEEE-------------------TTEEEEEEEEETTTCEEEEEEESEEEE-
T ss_pred cHHHHHHHHHHHHhhcC-eeeeccceeeeEEEe-------------------CCceeEEEEEECCCCeEEEEeeeEEEec
Confidence 45788899999999998 999999999999871 223333443 3565 7889999999
Q ss_pred cCCCch
Q 013625 168 DGGKSR 173 (439)
Q Consensus 168 DG~~S~ 173 (439)
.|..+.
T Consensus 199 tGG~~~ 204 (417)
T PF00890_consen 199 TGGFGG 204 (417)
T ss_dssp ---BGG
T ss_pred cCcccc
Confidence 999985
No 202
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=71.23 E-value=9.4 Score=36.87 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=31.9
Q ss_pred hhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC-ceeEEEeCCC-----cEEEecEEEEecCC
Q 013625 105 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDG-----TSLYAKLVVGADGG 170 (439)
Q Consensus 105 ~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~dg-----~~~~adlvVgADG~ 170 (439)
+...+.++|+.+++|++++. .+ +++.|++.+. .++.+|.||-|.|.
T Consensus 288 v~g~~~~~l~~~~~v~~~~~--------------------~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 288 VSGRGRLRLLPNTEVTSAEQ--------------------DGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp HHT---SEEETTEEEEEEEE--------------------ES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred hcCCCCeEEeCCCEEEEEEE--------------------CCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 33345689999999999987 33 5788888652 48999999999995
No 203
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.23 E-value=16 Score=37.10 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC----cEEEecEEEEecCCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKLVVGADGGK 171 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg----~~~~adlvVgADG~~ 171 (439)
++.+.+.+.+.+. ++++++++|++++. .++.+.+.+.++ +++.+|.||-|-|..
T Consensus 216 ~~~~~~~~~l~~~--v~i~~~~~v~~i~~--------------------~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 216 DIVKVFTKRIKKQ--FNIMLETKVTAVEA--------------------KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred HHHHHHHHHHhhc--eEEEcCCEEEEEEE--------------------cCCEEEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 4455666666554 89999999999975 335566766543 369999999999987
Q ss_pred chhh
Q 013625 172 SRVR 175 (439)
Q Consensus 172 S~vR 175 (439)
..+.
T Consensus 274 pn~~ 277 (471)
T PRK06467 274 PNGK 277 (471)
T ss_pred ccCC
Confidence 7654
No 204
>PTZ00058 glutathione reductase; Provisional
Probab=70.08 E-value=17 Score=37.75 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC-cEEEecEEEEecCCCchh
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgADG~~S~v 174 (439)
++.+.+.+.+++.| ++++++++|.+++. +.++.+.+.+.++ +++.+|.||-|-|....+
T Consensus 279 ~i~~~l~~~L~~~G-V~i~~~~~V~~I~~-------------------~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 279 TIINELENDMKKNN-INIITHANVEEIEK-------------------VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred HHHHHHHHHHHHCC-CEEEeCCEEEEEEe-------------------cCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 45667777787776 99999999999975 0123466666554 589999999999976543
No 205
>PLN02546 glutathione reductase
Probab=69.62 E-value=17 Score=37.68 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=42.9
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchhh
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 175 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 175 (439)
+...+.+.+++.| |+++.+++++++.. ..++.+.+.+.+++...+|.||-|-|......
T Consensus 295 ~~~~l~~~L~~~G-V~i~~~~~v~~i~~-------------------~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 295 VRDFVAEQMSLRG-IEFHTEESPQAIIK-------------------SADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred HHHHHHHHHHHCC-cEEEeCCEEEEEEE-------------------cCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 3455667777776 99999999999975 02244566666665556899999999887654
No 206
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=69.39 E-value=14 Score=38.08 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCc-----EEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT-----SLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~-----~~~adlvVgAD 168 (439)
..|..-|.+.+++.| |+|+++++|+++..+++.+ ......|... +|. ....|+||-|-
T Consensus 226 eSLV~PL~~~Le~~G-V~f~~~t~VtdL~~~~d~~---------------~~~VtgI~~~~~~~~~~I~l~~~DlVivTn 289 (576)
T PRK13977 226 ESLVLPLIKYLEDHG-VDFQYGTKVTDIDFDITGG---------------KKTATAIHLTRNGKEETIDLTEDDLVFVTN 289 (576)
T ss_pred hHHHHHHHHHHHhCC-CEEEeCCEEEEEEEcCCCC---------------ceEEEEEEEEeCCceeEEEecCCCEEEEeC
Confidence 456677888899998 9999999999998721100 1122333332 232 45679999999
Q ss_pred CC
Q 013625 169 GG 170 (439)
Q Consensus 169 G~ 170 (439)
|.
T Consensus 290 Gs 291 (576)
T PRK13977 290 GS 291 (576)
T ss_pred Cc
Confidence 85
No 207
>PRK09077 L-aspartate oxidase; Provisional
Probab=68.23 E-value=15 Score=37.95 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.++++|+.++.++++..+.+. .. +++..+.|.+ .+|+ .+.++.||.|.|
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~-------~~------~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATG 204 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKL-------GL------PGRRVVGAYVLNRNKERVETIRAKFVVLATG 204 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccc-------cC------CCCEEEEEEEEECCCCcEEEEecCeEEECCC
Confidence 4688889998887767999999999999761000 00 0123333443 3454 689999999999
Q ss_pred CCchhhh
Q 013625 170 GKSRVRE 176 (439)
Q Consensus 170 ~~S~vR~ 176 (439)
..+.+..
T Consensus 205 G~~~~~~ 211 (536)
T PRK09077 205 GASKVYL 211 (536)
T ss_pred CCCCCCC
Confidence 9997654
No 208
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=67.48 E-value=15 Score=36.29 Aligned_cols=59 Identities=19% Similarity=0.140 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc-EEEecEEEEecCC-Cc
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGG-KS 172 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~-~~~adlvVgADG~-~S 172 (439)
..|.....+.+.+.| |+|+.++.|++++. ++ |++.+|. ++.++.+|=|-|. -|
T Consensus 209 ~~l~~~a~~~L~~~G-V~v~l~~~Vt~v~~----------------------~~--v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 209 PKLSKYAERALEKLG-VEVLLGTPVTEVTP----------------------DG--VTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCceEEECC----------------------Cc--EEEccCCeeEecCEEEEcCCCcCC
Confidence 667777777888887 99999999999965 43 4555565 6999999999997 35
Q ss_pred hhhhhh
Q 013625 173 RVRELA 178 (439)
Q Consensus 173 ~vR~~l 178 (439)
++-+.+
T Consensus 264 ~~~~~l 269 (405)
T COG1252 264 PLLKDL 269 (405)
T ss_pred hhhhhc
Confidence 555554
No 209
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=67.16 E-value=13 Score=36.76 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=35.5
Q ss_pred CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 110 FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 110 ~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
+++++.++.|+.+.. ....|.+++|.++.+|.||-|-|.+..
T Consensus 72 ~i~~~~g~~V~~id~----------------------~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGR----------------------DTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEEC----------------------CCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 499999999999976 334567788999999999999999864
No 210
>PRK10262 thioredoxin reductase; Provisional
Probab=66.70 E-value=96 Score=29.35 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=40.7
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
++-..+.+.+.+.+...+ ++++.+ +|++++. ..+.++++.+++ .+.+|.||-|-|.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~v~~--------------------~~~~~~v~~~~~-~~~~d~vilAtG~~ 116 (321)
T PRK10262 60 LTGPLLMERMHEHATKFE-TEIIFD-HINKVDL--------------------QNRPFRLTGDSG-EYTCDALIIATGAS 116 (321)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEee-EEEEEEe--------------------cCCeEEEEecCC-EEEECEEEECCCCC
Confidence 445666777777777665 677776 5777765 335566665443 78999999999987
Q ss_pred c
Q 013625 172 S 172 (439)
Q Consensus 172 S 172 (439)
.
T Consensus 117 ~ 117 (321)
T PRK10262 117 A 117 (321)
T ss_pred C
Confidence 5
No 211
>PRK08275 putative oxidoreductase; Provisional
Probab=66.59 E-value=19 Score=37.39 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE---eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 169 (439)
..+.+.|.+.+.+.+ ++|+.++.|+++.. ++ ++..+.+. ..+|+ .+.|+.||-|.|
T Consensus 137 ~~i~~~L~~~~~~~g-v~i~~~~~v~~Li~---------~~---------~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (554)
T PRK08275 137 HDIKKVLYRQLKRAR-VLITNRIMATRLLT---------DA---------DGRVAGALGFDCRTGEFLVIRAKAVILCCG 197 (554)
T ss_pred HHHHHHHHHHHHHCC-CEEEcceEEEEEEE---------cC---------CCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence 467888999888776 99999999999976 10 11222232 34665 688999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 198 G~~~~ 202 (554)
T PRK08275 198 AAGRL 202 (554)
T ss_pred Ccccc
Confidence 98764
No 212
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=65.35 E-value=26 Score=35.32 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC-ceeEEEeCCC--cEEEecEEEEecCCCc
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDG--TSLYAKLVVGADGGKS 172 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~dg--~~~~adlvVgADG~~S 172 (439)
++...+.+.+++. ++|+++++|++++. ++ ..+++.+.+| .++.+|.||.|-|...
T Consensus 211 ~~~~~~~~~l~~~--I~i~~~~~v~~i~~--------------------~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 211 EVSKQAQKILSKE--FKIKLGAKVTSVEK--------------------SGDEKVEELEKGGKTETIEADYVLVATGRRP 268 (460)
T ss_pred HHHHHHHHHHhhc--cEEEcCCEEEEEEE--------------------cCCceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence 3445555556544 89999999999975 22 2455554444 4799999999999865
Q ss_pred hhh
Q 013625 173 RVR 175 (439)
Q Consensus 173 ~vR 175 (439)
.+.
T Consensus 269 ~~~ 271 (460)
T PRK06292 269 NTD 271 (460)
T ss_pred CCC
Confidence 543
No 213
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=63.66 E-value=14 Score=36.69 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
..+-..+.+.+++.| .+|.+.+.|.+|.. +.+..+.|.++||+.+.++.||-=-+.+=+.
T Consensus 264 Gavs~aia~~~~~~G-aeI~tka~Vq~Ill-------------------d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAG-AEIFTKATVQSILL-------------------DSGKAVGVRLADGTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hHHHHHHHHHHHhcc-ceeeehhhhhheec-------------------cCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence 567788999999998 89999999999988 1346788999999999999999887777666
Q ss_pred hhhh
Q 013625 175 RELA 178 (439)
Q Consensus 175 R~~l 178 (439)
-+.+
T Consensus 324 ~kLl 327 (561)
T KOG4254|consen 324 EKLL 327 (561)
T ss_pred HHhC
Confidence 5555
No 214
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=63.45 E-value=25 Score=32.64 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC---CC--cEEEecEEEEecCCCc
Q 013625 98 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DG--TSLYAKLVVGADGGKS 172 (439)
Q Consensus 98 ~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg--~~~~adlvVgADG~~S 172 (439)
...+.+.+.+..++++++++++.+++. ++....+.+. +| .++.+|+||-|-|.+.
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVG--------------------DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEc--------------------cCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 344556666663499999999999975 2222233332 23 4799999999999654
Q ss_pred h
Q 013625 173 R 173 (439)
Q Consensus 173 ~ 173 (439)
.
T Consensus 239 ~ 239 (300)
T TIGR01292 239 N 239 (300)
T ss_pred C
Confidence 4
No 215
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.23 E-value=22 Score=36.79 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc-eeEEE---eCCCc--EEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLD---LSDGT--SLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~---~~dg~--~~~adlvVgAD 168 (439)
..+...|.+.+.+.+ ++|++++.++++..+ ++. .+.+. ..+|+ .+.|+-||-|.
T Consensus 134 ~~i~~~L~~~~~~~g-v~i~~~t~v~~Li~~-------------------~~~~v~Gv~~~~~~~g~~~~i~AkaVIlAT 193 (543)
T PRK06263 134 HEMMMGLMEYLIKER-IKILEEVMAIKLIVD-------------------ENREVIGAIFLDLRNGEIFPIYAKATILAT 193 (543)
T ss_pred HHHHHHHHHHHhcCC-CEEEeCeEeeeeEEe-------------------CCcEEEEEEEEECCCCcEEEEEcCcEEECC
Confidence 457777888887765 999999999999761 112 23333 25664 68999999999
Q ss_pred CCCch
Q 013625 169 GGKSR 173 (439)
Q Consensus 169 G~~S~ 173 (439)
|..+.
T Consensus 194 GG~~~ 198 (543)
T PRK06263 194 GGAGQ 198 (543)
T ss_pred CCCCC
Confidence 99875
No 216
>PRK10262 thioredoxin reductase; Provisional
Probab=63.21 E-value=25 Score=33.45 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC-ceeEEEeCCC------cEEEecEEEEecC
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDG------TSLYAKLVVGADG 169 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~dg------~~~~adlvVgADG 169 (439)
+.+.+.+.+++.+ ++++.+++++++.. ++ ....|++.++ +++.+|.||-|-|
T Consensus 187 ~~~~~~~~l~~~g-V~i~~~~~v~~v~~--------------------~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G 245 (321)
T PRK10262 187 LIKRLMDKVENGN-IILHTNRTLEEVTG--------------------DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 245 (321)
T ss_pred HHHHHHhhccCCC-eEEEeCCEEEEEEc--------------------CCccEEEEEEEEcCCCCeEEEEECCEEEEEeC
Confidence 5566666676665 99999999999965 21 2223444321 3799999999999
Q ss_pred CCch
Q 013625 170 GKSR 173 (439)
Q Consensus 170 ~~S~ 173 (439)
....
T Consensus 246 ~~p~ 249 (321)
T PRK10262 246 HSPN 249 (321)
T ss_pred CccC
Confidence 6544
No 217
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=61.76 E-value=13 Score=36.02 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
+..-+.+.+.+.+ ++++.+ +|++++. ..-.|.+++|+++.+|.||-|-|.....
T Consensus 56 ~~~~~~~~~~~~g-v~~~~~-~v~~id~----------------------~~~~V~~~~g~~~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 56 IRIDLRRLARQAG-ARFVIA-EATGIDP----------------------DRRKVLLANRPPLSYDVLSLDVGSTTPL 109 (364)
T ss_pred hcccHHHHHHhcC-CEEEEE-EEEEEec----------------------ccCEEEECCCCcccccEEEEccCCCCCC
Confidence 3333445555555 898876 8999965 2236778899999999999999987653
No 218
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=61.70 E-value=32 Score=35.85 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc-eeEEEe--CCCc-EEEec-EEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDL--SDGT-SLYAK-LVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~--~dg~-~~~ad-lvVgADG 169 (439)
..+...|.+.+.+.+ ++|+.++.|+++.. +++ .+.|.. .++. .+.++ -||-|-|
T Consensus 214 ~~l~~~L~~~~~~~G-v~i~~~~~v~~l~~--------------------~~g~V~GV~~~~~~~~~~i~a~k~VVlAtG 272 (574)
T PRK12842 214 NALAARLAKSALDLG-IPILTGTPARELLT--------------------EGGRVVGARVIDAGGERRITARRGVVLACG 272 (574)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEe--------------------eCCEEEEEEEEcCCceEEEEeCCEEEEcCC
Confidence 346677888888876 99999999999986 223 223443 3443 57785 6777778
Q ss_pred CCc
Q 013625 170 GKS 172 (439)
Q Consensus 170 ~~S 172 (439)
..+
T Consensus 273 g~~ 275 (574)
T PRK12842 273 GFS 275 (574)
T ss_pred Ccc
Confidence 776
No 219
>PRK07512 L-aspartate oxidase; Provisional
Probab=61.00 E-value=22 Score=36.55 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe--CCCc-EEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT-SLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~-~~~adlvVgADG~~ 171 (439)
..+...|.+.+.+.++++|+.++.|+++.. +++..+.+.. .++. .+.|+-||-|.|..
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLV-------------------DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheee-------------------cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 467788888887764599999999999875 0122233333 2232 68999999999997
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
+.
T Consensus 197 ~~ 198 (513)
T PRK07512 197 GG 198 (513)
T ss_pred cC
Confidence 74
No 220
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=60.50 E-value=34 Score=35.80 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE---eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ |+|+.++.|+++..+ .+.+ ++..+.+. ..+|+ .+.|+-||-|.|
T Consensus 140 ~~i~~~L~~~~~~~g-v~i~~~~~v~~Li~~---------~~~~------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 203 (583)
T PRK08205 140 HMILQTLYQNCVKHG-VEFFNEFYVLDLLLT---------ETPS------GPVAAGVVAYELATGEIHVFHAKAVVFATG 203 (583)
T ss_pred HHHHHHHHHHHHhcC-CEEEeCCEEEEEEec---------CCcc------CCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence 467788999888776 999999999999761 0000 02223332 34564 688999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 204 G~~~~ 208 (583)
T PRK08205 204 GSGRV 208 (583)
T ss_pred CCccc
Confidence 98864
No 221
>PRK07208 hypothetical protein; Provisional
Probab=60.37 E-value=26 Score=35.42 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCce-e-EEEe--CCCc--EEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-A-KLDL--SDGT--SLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-v-~v~~--~dg~--~~~adlvVgAD 168 (439)
..|-..|.+.+.+.| ++|+++++|++|.. ++++ + .+.. .+|. ++.||.||-|=
T Consensus 218 ~~l~~~L~~~l~~~g-~~i~~~~~V~~I~~--------------------~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~ 276 (479)
T PRK07208 218 GQLWETAAEKLEALG-GKVVLNAKVVGLHH--------------------DGDGRIAVVVVNDTDGTEETVTADQVISSM 276 (479)
T ss_pred chHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------cCCcEEEEEEEEcCCCCEEEEEcCEEEECC
Confidence 355667777787776 89999999999987 2222 2 2333 3454 68899999876
Q ss_pred CCCchh
Q 013625 169 GGKSRV 174 (439)
Q Consensus 169 G~~S~v 174 (439)
-.+...
T Consensus 277 p~~~l~ 282 (479)
T PRK07208 277 PLRELV 282 (479)
T ss_pred CHHHHH
Confidence 554444
No 222
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=60.29 E-value=16 Score=36.32 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=38.4
Q ss_pred hhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 105 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 105 ~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++.+ +++++++.|+.++. ..-+|.+.+|+++..+.||-|-|.
T Consensus 137 Yke~g-Ie~~~~t~v~~~D~----------------------~~K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 137 YKEKG-IELILGTSVVKADL----------------------ASKTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred HhhcC-ceEEEcceeEEeec----------------------cccEEEeCCCceeecceEEEeecC
Confidence 34445 99999999999987 667899999999999999999998
No 223
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=59.92 E-value=17 Score=39.47 Aligned_cols=47 Identities=9% Similarity=0.025 Sum_probs=37.6
Q ss_pred HhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 104 CMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 104 ~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
.+.+.+ ++++.+++|++++. ..-.|.+.+|+++.+|.||-|-|.+..
T Consensus 63 ~~~~~g-v~~~~g~~V~~Id~----------------------~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 63 WYEKHG-ITLYTGETVIQIDT----------------------DQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred HHHHCC-CEEEcCCeEEEEEC----------------------CCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 344445 99999999999976 334677788999999999999997643
No 224
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=59.31 E-value=38 Score=32.98 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC---C--cEEEecEEEEecCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGG 170 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g--~~~~adlvVgADG~ 170 (439)
++.....+-+..++ ++++.+++|++.+. +.++.+.|..+| | ++++||++.-|=|+
T Consensus 253 Eisk~~qr~L~kQg-ikF~l~tkv~~a~~-------------------~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 253 EISKAFQRVLQKQG-IKFKLGTKVTSATR-------------------NGDGPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHHHHHHHHHhcC-ceeEeccEEEEeec-------------------cCCCceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 34444444444455 99999999999987 123478887754 3 38999999999996
Q ss_pred CchhhhhhC
Q 013625 171 KSRVRELAG 179 (439)
Q Consensus 171 ~S~vR~~l~ 179 (439)
+= .-+-||
T Consensus 313 rP-~t~GLg 320 (506)
T KOG1335|consen 313 RP-FTEGLG 320 (506)
T ss_pred cc-cccCCC
Confidence 53 334443
No 225
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=58.89 E-value=34 Score=33.44 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeE---EEeCCCcEEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK---LDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~---v~~~dg~~~~adlvVgADG~~ 171 (439)
..+-..+.+.+.+.+ ++++.+.++++++. ..+.+. +...++..+.+|+++-+-|.+
T Consensus 178 ~~~~~~~~~~l~~~g-i~~~~~~~~~~i~~--------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 178 PEVAEELAELLEKYG-VELLLGTKVVGVEG--------------------KGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHHHHHHHCC-cEEEeCCceEEEEc--------------------ccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 678888999999888 99999999999976 222222 688889999999999999976
Q ss_pred c
Q 013625 172 S 172 (439)
Q Consensus 172 S 172 (439)
-
T Consensus 237 p 237 (415)
T COG0446 237 P 237 (415)
T ss_pred c
Confidence 5
No 226
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=58.13 E-value=39 Score=32.07 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=46.3
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
+.=.+|.+.+.+.+...+ +++.. ..|.+++. .++...|.+++|+ ++++.||-|-|..
T Consensus 58 ~~g~~L~~~~~~~a~~~~-~~~~~-~~v~~v~~--------------------~~~~F~v~t~~~~-~~ak~vIiAtG~~ 114 (305)
T COG0492 58 ILGPELMEQMKEQAEKFG-VEIVE-DEVEKVEL--------------------EGGPFKVKTDKGT-YEAKAVIIATGAG 114 (305)
T ss_pred CchHHHHHHHHHHHhhcC-eEEEE-EEEEEEee--------------------cCceEEEEECCCe-EEEeEEEECcCCc
Confidence 455788888888887666 78777 67777765 2227899999998 9999999999986
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
.+
T Consensus 115 ~~ 116 (305)
T COG0492 115 AR 116 (305)
T ss_pred cc
Confidence 64
No 227
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=57.58 E-value=38 Score=34.80 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEec--EEEEecCC-
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAK--LVVGADGG- 170 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~ad--lvVgADG~- 170 (439)
.|...|++.+.+..+++|+++++|+++..+ + + .-.+|.+.. +|. .+.|+ +|+++.|.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~----------~--g-----~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVE----------D--G-----RVVGAVVER-GGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEec----------C--C-----EEEEEEEEE-CCcEEEEEeCceEEEeCCCcc
Confidence 355556666666545999999999999761 0 0 112333333 443 68886 88888886
Q ss_pred -Cchhhhhh
Q 013625 171 -KSRVRELA 178 (439)
Q Consensus 171 -~S~vR~~l 178 (439)
+...++.+
T Consensus 236 ~n~~m~~~~ 244 (513)
T PRK12837 236 QNDDMRARY 244 (513)
T ss_pred CCHHHHHHh
Confidence 44455544
No 228
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.97 E-value=34 Score=36.22 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEEEecCCCc
Q 013625 98 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADGGKS 172 (439)
Q Consensus 98 ~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG~~S 172 (439)
.+.|.+.+.+.+ |+|++++.++++..+ ++..+.|.. .+|. .+.|+.||-|.|..+
T Consensus 173 ~~~L~~~~~~~g-V~i~~~t~v~~Li~d-------------------~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGT-VKMYTRTEMLDLVVV-------------------DGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcC-CEEEeceEEEEEEEe-------------------CCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 456666776665 999999999999760 122333433 3564 689999999999988
Q ss_pred hh
Q 013625 173 RV 174 (439)
Q Consensus 173 ~v 174 (439)
.+
T Consensus 233 ~~ 234 (640)
T PRK07573 233 NV 234 (640)
T ss_pred cC
Confidence 64
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=56.22 E-value=33 Score=35.20 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEeCC---C--cEEEecEEEEecCCCc
Q 013625 99 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSD---G--TSLYAKLVVGADGGKS 172 (439)
Q Consensus 99 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~d---g--~~~~adlvVgADG~~S 172 (439)
+.+.+.+.+..+++|++++.++++.. +++.+ .|.+.+ | +++.+|.||-|-|...
T Consensus 391 ~~l~~~l~~~~gV~i~~~~~v~~i~~--------------------~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 391 KVLQDKLKSLPNVDILTSAQTTEIVG--------------------DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred HHHHHHHhcCCCCEEEECCeeEEEEc--------------------CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 44566666543499999999999965 22333 355543 3 3789999999999654
No 230
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=55.59 E-value=37 Score=35.74 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE---eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ ++|+.++.++++..+ + ++..+.|. ..+|+ .+.|+-||-|.|
T Consensus 166 ~~i~~~L~~~a~~~g-v~i~~~~~~~~Li~~---------~---------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYD-CNFFIEYFALDLIMD---------E---------DGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCC-CEEEeceEEEEEEEC---------C---------CCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 478889999888876 999999999998750 0 12233333 34664 788999999999
Q ss_pred CCch
Q 013625 170 GKSR 173 (439)
Q Consensus 170 ~~S~ 173 (439)
..+.
T Consensus 227 G~~~ 230 (617)
T PTZ00139 227 GYGR 230 (617)
T ss_pred CCcc
Confidence 8765
No 231
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=54.97 E-value=44 Score=34.88 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCc--EEEe-cEEEEecCCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYA-KLVVGADGGK 171 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~a-dlvVgADG~~ 171 (439)
.|...|.+.+++.+ ++|+.+++|+++.. +++..+.|... +|+ ++.+ +-||-|-|..
T Consensus 222 ~l~~aL~~~~~~~G-v~i~~~t~v~~Li~-------------------~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~ 281 (578)
T PRK12843 222 ALIGRLLYSLRARG-VRILTQTDVESLET-------------------DHGRVIGATVVQGGVRRRIRARGGVVLATGGF 281 (578)
T ss_pred HHHHHHHHHHHhCC-CEEEeCCEEEEEEe-------------------eCCEEEEEEEecCCeEEEEEccceEEECCCCc
Confidence 57778888888887 99999999999975 01233334443 343 5776 6788898988
Q ss_pred chh
Q 013625 172 SRV 174 (439)
Q Consensus 172 S~v 174 (439)
+.-
T Consensus 282 ~~n 284 (578)
T PRK12843 282 NRH 284 (578)
T ss_pred ccC
Confidence 774
No 232
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=54.44 E-value=19 Score=39.42 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=37.1
Q ss_pred hhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 105 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 105 ~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
+.+.+ ++++.+++|+++.. ..-.|.+.+|+++.+|.||-|-|.+..+
T Consensus 69 ~~~~g-I~~~~g~~V~~Id~----------------------~~~~V~~~~G~~i~yD~LVIATGs~p~~ 115 (847)
T PRK14989 69 YEKHG-IKVLVGERAITINR----------------------QEKVIHSSAGRTVFYDKLIMATGSYPWI 115 (847)
T ss_pred HHhCC-CEEEcCCEEEEEeC----------------------CCcEEEECCCcEEECCEEEECCCCCcCC
Confidence 34444 99999999999965 3345677889999999999999986543
No 233
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=53.95 E-value=44 Score=35.34 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ ++|+.++.++++.. +. ++..+.+.. .+|+ .+.|+-||-|.|
T Consensus 187 ~~i~~~L~~~a~~~g-v~i~~~~~~~~Li~---------~~---------~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 187 HAMLHTLYGQAMKHN-TQFFVEYFALDLIM---------DS---------DGACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHhCC-CEEEEeeEEEEEEE---------cC---------CCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 567888888888775 99999999999876 00 123333333 4564 789999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+..
T Consensus 248 G~g~~ 252 (635)
T PLN00128 248 GYGRA 252 (635)
T ss_pred CCccc
Confidence 98753
No 234
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=53.93 E-value=20 Score=34.63 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=45.1
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC----CCcEEEecEEEE
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS----DGTSLYAKLVVG 166 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~----dg~~~~adlvVg 166 (439)
...|.++.+.|.-.+.+.+ -.++++.+|++|+.. .+. ....++|... ++.++.|+-||-
T Consensus 91 ~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~---------~~~-------~~~~~~V~~~~~~g~~~~~~ar~vVl 153 (341)
T PF13434_consen 91 FPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPD---------DDG-------DEDLFRVTTRDSDGDGETYRARNVVL 153 (341)
T ss_dssp S-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEE---------EET-------TEEEEEEEEEETTS-EEEEEESEEEE
T ss_pred CCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEe---------cCC-------CccEEEEEEeecCCCeeEEEeCeEEE
Confidence 4789999999988888886 459999999999871 100 1135777773 346999999999
Q ss_pred ecCCCchhhhhh
Q 013625 167 ADGGKSRVRELA 178 (439)
Q Consensus 167 ADG~~S~vR~~l 178 (439)
|-|..-.+-+.+
T Consensus 154 a~G~~P~iP~~~ 165 (341)
T PF13434_consen 154 ATGGQPRIPEWF 165 (341)
T ss_dssp ----EE---GGG
T ss_pred CcCCCCCCCcch
Confidence 999444443333
No 235
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=53.72 E-value=27 Score=35.05 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc-ee-EEEe--CCC--cEEEecEEEEec
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LA-KLDL--SDG--TSLYAKLVVGAD 168 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~v-~v~~--~dg--~~~~adlvVgAD 168 (439)
..+.+.|.+.+++.++++|+.++.+.++.. +++ .+ .|.. .++ .++.++.||-|.
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~--------------------~~~~~~~Gv~~~~~~~~~~~~~a~~vVLAT 192 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLII--------------------EDGIGVAGVLVLNRNGELGTFRAKAVVLAT 192 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhh--------------------cCCceEeEEEEecCCCeEEEEecCeEEEec
Confidence 678889999999999999999999999976 223 33 3443 444 488899999999
Q ss_pred CCCchhhh
Q 013625 169 GGKSRVRE 176 (439)
Q Consensus 169 G~~S~vR~ 176 (439)
|.-+.+=+
T Consensus 193 GG~g~ly~ 200 (518)
T COG0029 193 GGLGGLYA 200 (518)
T ss_pred CCCccccc
Confidence 98776633
No 236
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=53.61 E-value=26 Score=35.02 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=36.4
Q ss_pred HHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe-CCCcEEE--ecEEEEecCCCch
Q 013625 103 SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGTSLY--AKLVVGADGGKSR 173 (439)
Q Consensus 103 ~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~~~~--adlvVgADG~~S~ 173 (439)
+.+.+.+ ++++.+++|++++. ++..+++.- .+|.++. +|.||-|-|.+..
T Consensus 64 ~~~~~~g-v~~~~~~~V~~id~--------------------~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 64 EEFIKSG-IDVKTEHEVVKVDA--------------------KNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred HHHHHCC-CeEEecCEEEEEEC--------------------CCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 4444555 99999999999976 345566653 3466666 9999999998654
No 237
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=53.45 E-value=39 Score=31.61 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=46.2
Q ss_pred eeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC---C-CcEEEecEEE
Q 013625 90 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---D-GTSLYAKLVV 165 (439)
Q Consensus 90 ~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---d-g~~~~adlvV 165 (439)
-.+|-..|.+++++.+++.++|++.+| +|+++..+ +.....+..+ + +.....+.+|
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dE-------------------k~r~n~v~~ae~~~ti~~~d~~~iv 201 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDE-------------------KHRINSVPKAEAEDTIIKADVHKIV 201 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecc-------------------cccccccchhhhcCceEEeeeeEEE
Confidence 468889999999999999999999999 67777420 1111111111 2 3467889999
Q ss_pred EecCCCch
Q 013625 166 GADGGKSR 173 (439)
Q Consensus 166 gADG~~S~ 173 (439)
-|-|.++.
T Consensus 202 vsaGPWTs 209 (380)
T KOG2852|consen 202 VSAGPWTS 209 (380)
T ss_pred EecCCCch
Confidence 99999876
No 238
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=52.80 E-value=27 Score=34.89 Aligned_cols=57 Identities=21% Similarity=0.127 Sum_probs=39.5
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcC--------CeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecE
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYP--------SRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~--------~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adl 163 (439)
..-.-+..+|...+...+...+.+| ++|..|.. +..+.|.|++.||+.+.||.
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~-------------------~~~~~v~l~c~dg~v~~adh 277 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINW-------------------KNTGEVKLRCSDGEVFHADH 277 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeecc-------------------CCCCcEEEEEeCCcEEeccE
Confidence 4444455555555444444455555 99999987 12378999999999999999
Q ss_pred EEEe
Q 013625 164 VVGA 167 (439)
Q Consensus 164 vVgA 167 (439)
||-.
T Consensus 278 VIvT 281 (498)
T KOG0685|consen 278 VIVT 281 (498)
T ss_pred EEEE
Confidence 9864
No 239
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=51.76 E-value=56 Score=33.94 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeee
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMAL 124 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~ 124 (439)
.+...|.+.+.+.+ ++|+++++|+++..
T Consensus 209 ~~~~~L~~~~~~~g-v~v~~~t~v~~l~~ 236 (557)
T PRK07843 209 ALAAGLRIGLQRAG-VPVLLNTPLTDLYV 236 (557)
T ss_pred HHHHHHHHHHHcCC-CEEEeCCEEEEEEE
Confidence 46667777787776 99999999999986
No 240
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.88 E-value=52 Score=34.49 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 169 (439)
..|...|.+.+.+.+ ++|+.++.++++.. ++ ++..+.|.. .+|. .+.++-||-|.|
T Consensus 148 ~~l~~~L~~~~~~~g-i~i~~~~~~~~Li~---------~~---------~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 148 HALLHTLYQQNVAAK-TQFFVEWMALDLIR---------DA---------DGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred HHHHHHHHHHHHhcC-CEEEeCcEEEEEEE---------cC---------CCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 468888888888776 99999999999986 10 122333332 4564 688999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 209 G~~~~ 213 (591)
T PRK07057 209 GAGRI 213 (591)
T ss_pred Ccccc
Confidence 98864
No 241
>PRK12839 hypothetical protein; Provisional
Probab=49.85 E-value=67 Score=33.52 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc-EEEe-cEEEEecCCC
Q 013625 94 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYA-KLVVGADGGK 171 (439)
Q Consensus 94 R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~-~~~a-dlvVgADG~~ 171 (439)
-..|...|.+.+.+.+ ++|+.++.++++..+ ++ + .-.+|.+...+|+ .+.+ +-||-|-|..
T Consensus 213 g~~l~~~L~~~a~~~G-v~i~~~t~v~~Li~~---------~~--g-----~V~GV~~~~~~g~~~i~aak~VVLAtGGf 275 (572)
T PRK12839 213 GTALTGRLLRSADDLG-VDLRVSTSATSLTTD---------KN--G-----RVTGVRVQGPDGAVTVEATRGVVLATGGF 275 (572)
T ss_pred HHHHHHHHHHHHHHCC-CEEEcCCEEEEEEEC---------CC--C-----cEEEEEEEeCCCcEEEEeCCEEEEcCCCc
Confidence 4566778888888887 999999999999751 00 0 1123444444554 4445 6666666666
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
+.
T Consensus 276 ~~ 277 (572)
T PRK12839 276 PN 277 (572)
T ss_pred cc
Confidence 65
No 242
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=48.51 E-value=63 Score=33.57 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=43.7
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
+....+...+.+.+.+.+ ++++ +++|+++.. .+....|...+| .+.++.||-|.|.+
T Consensus 57 ~~~~~l~~~l~~~~~~~g-v~~~-~~~V~~i~~--------------------~~~~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 57 TTGPELMQEMRQQAQDFG-VKFL-QAEVLDVDF--------------------DGDIKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred CCHHHHHHHHHHHHHHcC-CEEe-ccEEEEEEe--------------------cCCEEEEEecCC-EEEEeEEEECCCCc
Confidence 344677778888887776 8875 678988865 234456666665 58899999999997
Q ss_pred chh
Q 013625 172 SRV 174 (439)
Q Consensus 172 S~v 174 (439)
...
T Consensus 114 p~~ 116 (555)
T TIGR03143 114 PRK 116 (555)
T ss_pred cCC
Confidence 643
No 243
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=48.47 E-value=49 Score=33.97 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCcee-EEEeC---CCc--EEEecEEEEecCCC
Q 013625 98 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLS---DGT--SLYAKLVVGADGGK 171 (439)
Q Consensus 98 ~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~---dg~--~~~adlvVgADG~~ 171 (439)
...|.+.+.+..++++++++.++++.. +++.+ .+.+. +|+ ++.+|.|+-|-|..
T Consensus 389 ~~~l~~~l~~~~gI~i~~~~~v~~i~~--------------------~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 389 DQVLQDKLRSLPNVTIITNAQTTEVTG--------------------DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred cHHHHHHHhcCCCcEEEECcEEEEEEc--------------------CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 345666666555699999999999975 22222 24443 343 69999999999876
Q ss_pred c
Q 013625 172 S 172 (439)
Q Consensus 172 S 172 (439)
.
T Consensus 449 p 449 (517)
T PRK15317 449 P 449 (517)
T ss_pred c
Confidence 4
No 244
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=48.07 E-value=58 Score=33.90 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ |+|+.++.++++.. +++..+.|.. .+|+ .+.|+-||-|.|
T Consensus 136 ~~i~~~L~~~~~~~g-v~i~~~~~~~~Li~-------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 136 MALLHTLFERTSGLN-VDFYNEWFSLDLVT-------------------DNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCcEEEEEEE-------------------ECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 357777888887775 99999999999987 0223333443 2443 688999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 196 G~~~l 200 (566)
T PRK06452 196 GMGML 200 (566)
T ss_pred ccccc
Confidence 88854
No 245
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.04 E-value=32 Score=32.97 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=51.7
Q ss_pred ehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 93 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 93 ~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
.=..|-..|.+++++.+ |+|+...+.++++. .. +.++-.+|++++|-..+++-||-|.|++
T Consensus 264 eGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~---------a~--------~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 264 EGPKLAAALEAHVKQYD-VDVMNLQRASKLEP---------AA--------VEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cchHHHHHHHHHHhhcC-chhhhhhhhhccee---------cC--------CCCccEEEEecCCceeccceEEEecCcc
Confidence 34789999999999987 99999999999876 11 1357799999999999999999999975
No 246
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.93 E-value=55 Score=34.37 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE---eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ ++|+.++.++++..+ . ++..+.|. ..+|. .+.|+-||-|.|
T Consensus 149 ~~i~~~L~~~~~~~g-i~i~~~~~v~~Li~~---------~---------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 209 (598)
T PRK09078 149 HAILHTLYQQSLKHN-AEFFIEYFALDLIMD---------D---------GGVCRGVVAWNLDDGTLHRFRAHMVVLATG 209 (598)
T ss_pred HHHHHHHHHHHhhcC-CEEEEeEEEEEEEEc---------C---------CCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 357888888888776 999999999999861 0 11233333 34665 788999999999
Q ss_pred CCch
Q 013625 170 GKSR 173 (439)
Q Consensus 170 ~~S~ 173 (439)
..+.
T Consensus 210 G~~~ 213 (598)
T PRK09078 210 GYGR 213 (598)
T ss_pred CCcc
Confidence 8875
No 247
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.91 E-value=72 Score=33.38 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe-CCCc--EEEec-EEEEecCCCc
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAK-LVVGADGGKS 172 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~--~~~ad-lvVgADG~~S 172 (439)
|...|.+.+.+.+ ++|+++++++++..+ + ++..+.|.. .+|. .+.|+ -||-|.|..+
T Consensus 215 ~~~~l~~~~~~~g-v~i~~~~~~~~Li~d---------~---------~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 215 LVARLRLALKDAG-VPLWLDSPMTELITD---------P---------DGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHhCC-ceEEeCCEEEEEEEC---------C---------CCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 4445666666655 999999999999871 1 112223333 2443 57886 4777777766
Q ss_pred h
Q 013625 173 R 173 (439)
Q Consensus 173 ~ 173 (439)
.
T Consensus 276 ~ 276 (584)
T PRK12835 276 H 276 (584)
T ss_pred C
Confidence 4
No 248
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=47.63 E-value=18 Score=31.39 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=35.3
Q ss_pred HHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc-----eeEE---EeCCCcEEEecEEEEecCCCc
Q 013625 101 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-----LAKL---DLSDGTSLYAKLVVGADGGKS 172 (439)
Q Consensus 101 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v---~~~dg~~~~adlvVgADG~~S 172 (439)
+.+.+...+ ++++.++++.++.. ... .+.+ ...++.++.+|.||-|.|.++
T Consensus 64 ~~~~~~~~~-v~~~~~~~v~~i~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 64 LVDQLKNRG-VEIRLNAKVVSIDP--------------------ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp HHHHHHHHT-HEEEHHHTEEEEEE--------------------STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred cccccccce-EEEeeccccccccc--------------------cccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 343444444 99999999999976 222 1222 234556999999999999664
Q ss_pred h
Q 013625 173 R 173 (439)
Q Consensus 173 ~ 173 (439)
.
T Consensus 123 ~ 123 (201)
T PF07992_consen 123 R 123 (201)
T ss_dssp E
T ss_pred c
Confidence 4
No 249
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=47.59 E-value=73 Score=33.16 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE---eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ |+|+.++.++++.. +++..+.+. ..+|+ .+.|+-||-|.|
T Consensus 119 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~-------------------~~g~v~Ga~~~~~~~g~~~~i~AkaVILATG 178 (565)
T TIGR01816 119 HAILHTLYQQNLKAD-TSFFNEYFALDLLM-------------------EDGECRGVIAYCLETGEIHRFRAKAVVLATG 178 (565)
T ss_pred HHHHHHHHHHHHhCC-CEEEeccEEEEEEe-------------------eCCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence 468888889888776 99999999999986 022333333 34565 688999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 179 G~~~~ 183 (565)
T TIGR01816 179 GYGRI 183 (565)
T ss_pred Ccccc
Confidence 98764
No 250
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=46.08 E-value=22 Score=25.80 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=29.6
Q ss_pred EEcccccccCCcccccchhcHHHHH-HHHHHHHHh
Q 013625 322 LIGDAAHTVHPLAGQGVNLGFGDAS-TLSRIIAEG 355 (439)
Q Consensus 322 LvGDAAh~~~P~~g~G~~~al~da~-~La~~L~~~ 355 (439)
.||-|-+.|+|..=+.++.|++||. .|..+....
T Consensus 18 mvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~a 52 (79)
T PF10819_consen 18 MVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHA 52 (79)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999998 787777664
No 251
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=45.86 E-value=62 Score=30.18 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc----EEEecEEEEecCC-
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT----SLYAKLVVGADGG- 170 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~----~~~adlvVgADG~- 170 (439)
.....|. .+.+.++++|+.+++|++|..+ .++ ..-.+|++...++. .+.++.||-|=|+
T Consensus 194 ~~~~~L~-~a~~~~n~~l~~~~~V~~i~~~---------~~~------~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai 257 (296)
T PF00732_consen 194 AATTYLP-PALKRPNLTLLTNARVTRIIFD---------GDG------GRATGVEYVDNDGGVQRRIVAAKEVILAAGAI 257 (296)
T ss_dssp HHHHHHH-HHTTTTTEEEEESEEEEEEEEE---------TTS------TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHH
T ss_pred hhhcccc-hhhccCCccEEcCcEEEEEeee---------ccc------cceeeeeeeecCCcceeeeccceeEEeccCCC
Confidence 4444444 4446667999999999999661 010 02244555555554 5678999999885
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
.|+
T Consensus 258 ~Tp 260 (296)
T PF00732_consen 258 GTP 260 (296)
T ss_dssp HHH
T ss_pred CCh
Confidence 443
No 252
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=45.82 E-value=75 Score=32.12 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCcEEEcCCeeEEee--eCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCCCch
Q 013625 100 SLLSCMQNTEFQKTIYPSRLTSMA--LLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 173 (439)
Q Consensus 100 ~L~~~~~~~~~v~v~~~~~v~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~ 173 (439)
.+.+.+...+ ++++.+. ++.++ . +...++|...+|. ++.+|.||-|-|.+..
T Consensus 97 ~~~~~l~~~g-V~~~~g~-~~~~~~~~--------------------~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 97 DIRARLEREG-VRVIAGR-GRLIDPGL--------------------GPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHCC-CEEEEEE-EEEeeccc--------------------CCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 4455555555 9998884 33332 2 3367888888886 7999999999999764
No 253
>PRK08071 L-aspartate oxidase; Provisional
Probab=45.64 E-value=52 Score=33.76 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe--CCCc--EEEecEEEEecCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT--SLYAKLVVGADGG 170 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~--~~~adlvVgADG~ 170 (439)
..+.+.|.+.+. . +|+|+.++.++++..+ ++..+.+.. .+|+ .+.|+.||-|.|.
T Consensus 130 ~~i~~~L~~~~~-~-gV~i~~~~~v~~Li~~-------------------~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 130 KNLLEHLLQELV-P-HVTVVEQEMVIDLIIE-------------------NGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHHh-c-CCEEEECeEhhheeec-------------------CCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 356777888775 3 4999999999999750 122233333 3444 6889999999999
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
.+.
T Consensus 189 ~~~ 191 (510)
T PRK08071 189 CGG 191 (510)
T ss_pred Ccc
Confidence 885
No 254
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=45.23 E-value=62 Score=32.47 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCc
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 172 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 172 (439)
+.+.+.+.+...+ ++++.+ +++.+.. ..+.+. .+|.++.+|.||-|.|.+-
T Consensus 92 ~~~~~~~~l~~~g-V~~~~g-~~~~v~~----------------------~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 92 LSGLYKRLLANAG-VELLEG-RARLVGP----------------------NTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHHHhCC-cEEEEE-EEEEecC----------------------CEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 3444555555555 898887 6666643 445554 4677899999999999764
No 255
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=44.78 E-value=77 Score=33.32 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhc---CCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CCCc--EEEecEEEEe
Q 013625 96 VLHSSLLSCMQN---TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGA 167 (439)
Q Consensus 96 ~l~~~L~~~~~~---~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgA 167 (439)
.+...|.+.+.+ .++|+|++++.++++..+ . ++..+.|.. .+|. .+.|+.||-|
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~d---------d---------~grV~GV~~~~~~~g~~~~i~AkaVVLA 191 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVV---------D---------GNRARGIIARNLVTGEIETHSADAVILA 191 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEc---------C---------CCEEEEEEEEECCCCcEEEEEcCEEEEC
Confidence 344445554433 245999999999999761 0 112333433 2554 6889999999
Q ss_pred cCCCchh
Q 013625 168 DGGKSRV 174 (439)
Q Consensus 168 DG~~S~v 174 (439)
.|..+.+
T Consensus 192 TGG~g~~ 198 (603)
T TIGR01811 192 TGGYGNV 198 (603)
T ss_pred CCCCcCc
Confidence 9997754
No 256
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=43.55 E-value=33 Score=33.68 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=46.2
Q ss_pred ccceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEE
Q 013625 86 EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVV 165 (439)
Q Consensus 86 ~~~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvV 165 (439)
.+.++.++-.+|..+. .|+|-|..|.+|+.+.. ..-.|.++||++|.+|=..
T Consensus 253 epd~FfvspeDLp~~~------nGGvAvl~G~kvvkid~----------------------~d~~V~LnDG~~I~YdkcL 304 (659)
T KOG1346|consen 253 EPDGFFVSPEDLPKAV------NGGVAVLRGRKVVKIDE----------------------EDKKVILNDGTTIGYDKCL 304 (659)
T ss_pred cCCcceeChhHCcccc------cCceEEEeccceEEeec----------------------ccCeEEecCCcEeehhhee
Confidence 3456778877776532 25699999999999976 4556788999999999888
Q ss_pred EecCCCch
Q 013625 166 GADGGKSR 173 (439)
Q Consensus 166 gADG~~S~ 173 (439)
-|.|.+-+
T Consensus 305 IATG~~Pk 312 (659)
T KOG1346|consen 305 IATGVRPK 312 (659)
T ss_pred eecCcCcc
Confidence 88887643
No 257
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=42.71 E-value=75 Score=31.80 Aligned_cols=44 Identities=2% Similarity=-0.102 Sum_probs=33.1
Q ss_pred CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC-Cc--EEEecEEEEecCCCch
Q 013625 110 FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GT--SLYAKLVVGADGGKSR 173 (439)
Q Consensus 110 ~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~--~~~adlvVgADG~~S~ 173 (439)
+++++.+++|++|.. +...|.+...+ +. ++.+|.||-|-|.+..
T Consensus 72 ~i~v~~~~~V~~Id~--------------------~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 72 QITVKTYHEVIAIND--------------------ERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred CCEEEeCCEEEEEEC--------------------CCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 499999999999976 34556665532 23 4689999999998764
No 258
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=42.04 E-value=56 Score=31.87 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=33.5
Q ss_pred hhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 105 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 105 ~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
+.+.+ ++++.+++|+++.. ... .|.. +|.++.+|.||-|-|....
T Consensus 68 ~~~~g-v~~~~~~~V~~id~--------------------~~~--~v~~-~~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 68 AEQFN-LRLFPHTWVTDIDA--------------------EAQ--VVKS-QGNQWQYDKLVLATGASAF 112 (377)
T ss_pred HHhCC-CEEECCCEEEEEEC--------------------CCC--EEEE-CCeEEeCCEEEECCCCCCC
Confidence 34445 99999999999975 222 3343 5678999999999998653
No 259
>PLN02507 glutathione reductase
Probab=41.31 E-value=83 Score=32.16 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCCCch
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 173 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~ 173 (439)
+...+.+.+...+ +++..+ +++.+.. ..+.|+..+|+ ++.+|.||-|-|.+..
T Consensus 126 ~~~~~~~~l~~~g-V~~i~g-~a~~vd~----------------------~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 126 LNGIYKRLLANAG-VKLYEG-EGKIVGP----------------------NEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred HHHHHHHHHHhCC-cEEEEE-EEEEecC----------------------CEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 3333444444445 888887 5555533 67888888886 6899999999998654
No 260
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=41.30 E-value=62 Score=36.30 Aligned_cols=64 Identities=9% Similarity=-0.043 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC--ceeEEEeC--CCcEEEecEEEEecCCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG--HLAKLDLS--DGTSLYAKLVVGADGGK 171 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~~~--dg~~~~adlvVgADG~~ 171 (439)
.+...+.+.+++.+ |+|+.++.|+.+.. ++ ..+++... +++++.+|.|+-+-|..
T Consensus 352 ~~~~~l~~~L~~~G-V~i~~~~~v~~i~g--------------------~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 352 DVSPEARAEARELG-IEVLTGHVVAATEG--------------------GKRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred chhHHHHHHHHHcC-CEEEcCCeEEEEec--------------------CCcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 34455667777776 99999999999964 22 23444422 45689999999999986
Q ss_pred chh--hhhhCC
Q 013625 172 SRV--RELAGF 180 (439)
Q Consensus 172 S~v--R~~l~~ 180 (439)
..+ -+.++.
T Consensus 411 Pnt~L~~~lg~ 421 (985)
T TIGR01372 411 PVVHLFSQRGG 421 (985)
T ss_pred chhHHHHhcCC
Confidence 554 344443
No 261
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=41.28 E-value=63 Score=32.69 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=20.3
Q ss_pred HHHHhhcCCCcEEEcCCeeEEeeeCC
Q 013625 101 LLSCMQNTEFQKTIYPSRLTSMALLP 126 (439)
Q Consensus 101 L~~~~~~~~~v~v~~~~~v~~i~~~~ 126 (439)
|.+.++++| |+++++++|++++.++
T Consensus 213 l~~~L~~~G-V~F~~~t~V~di~~~~ 237 (500)
T PF06100_consen 213 LIRYLKSQG-VDFRFNTKVTDIDFDI 237 (500)
T ss_pred HHHHHHHCC-CEEECCCEEEEEEEEc
Confidence 456666776 9999999999999843
No 262
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=41.19 E-value=99 Score=32.13 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeee
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMAL 124 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~ 124 (439)
..|...|.+.+++.+ ++|+++++|+++..
T Consensus 208 ~~l~~~l~~~~~~~g-v~i~~~~~v~~Li~ 236 (557)
T PRK12844 208 AALIGRMLEAALAAG-VPLWTNTPLTELIV 236 (557)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE
Confidence 356677888888886 99999999999986
No 263
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.04 E-value=1.1e+02 Score=31.83 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE---eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ |+|+.++.++++.. ++ ++..+.+. ..+|+ .+.|+-||-|.|
T Consensus 126 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~---------~~---------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLKNG-TTFLNEWYAVDLVK---------NQ---------DGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhccC-CEEEECcEEEEEEE---------cC---------CCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 568888998888776 99999999999986 10 12333343 35665 688999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 187 G~~~~ 191 (570)
T PRK05675 187 GAGRI 191 (570)
T ss_pred Ccccc
Confidence 98864
No 264
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=40.91 E-value=1e+02 Score=32.75 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=38.9
Q ss_pred HHHHHHHHh-hcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC-------C--------cEEE
Q 013625 97 LHSSLLSCM-QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-------G--------TSLY 160 (439)
Q Consensus 97 l~~~L~~~~-~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-------g--------~~~~ 160 (439)
+...+.+.+ ++.| |+|+.+++|.+++. ++ ....+.+.+.+ + +++.
T Consensus 355 is~~l~~~ll~~~G-V~I~~~~~V~~I~~-----------~~-------~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~ 415 (659)
T PTZ00153 355 VAKYFERVFLKSKP-VRVHLNTLIEYVRA-----------GK-------GNQPVIIGHSERQTGESDGPKKNMNDIKETY 415 (659)
T ss_pred HHHHHHHHHhhcCC-cEEEcCCEEEEEEe-----------cC-------CceEEEEEEeccccccccccccccccceEEE
Confidence 445555554 3455 99999999999975 00 11235555421 1 3799
Q ss_pred ecEEEEecCCCchh
Q 013625 161 AKLVVGADGGKSRV 174 (439)
Q Consensus 161 adlvVgADG~~S~v 174 (439)
+|.||-|-|..-.+
T Consensus 416 aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 416 VDSCLVATGRKPNT 429 (659)
T ss_pred cCEEEEEECcccCC
Confidence 99999999986554
No 265
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.97 E-value=1.2e+02 Score=31.86 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEE---eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 169 (439)
..|...|.+.+.+.+ ++|+.++.++++..+ + ++..+.+. ..+|+ .+.|+-||-|.|
T Consensus 143 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~~---------~---------~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 203 (588)
T PRK08958 143 HALLHTLYQQNLKNH-TTIFSEWYALDLVKN---------Q---------DGAVVGCTAICIETGEVVYFKARATVLATG 203 (588)
T ss_pred HHHHHHHHHHhhhcC-CEEEeCcEEEEEEEC---------C---------CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 467788888887765 999999999999861 0 12333333 34665 688999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 204 G~~~~ 208 (588)
T PRK08958 204 GAGRI 208 (588)
T ss_pred Ccccc
Confidence 98864
No 266
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=39.72 E-value=87 Score=33.31 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCce--eEEE-eCCCc--EEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL--AKLD-LSDGT--SLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--v~v~-~~dg~--~~~adlvVgADG 169 (439)
..+...|.+.+.+.+ ++|+.++.++++..+ ++.. +.+. ..+|+ .+.|+-||-|.|
T Consensus 158 ~~l~~~L~~~~~~~g-v~i~~~~~~~~Li~~-------------------~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 158 HTMLYAVDNEAIKLG-VPVHDRKEAIALIHD-------------------GKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHHHHHHHHHhCC-CEEEeeEEEEEEEEE-------------------CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 346667888887776 999999999999860 1222 3343 24675 578999999999
Q ss_pred CCchh
Q 013625 170 GKSRV 174 (439)
Q Consensus 170 ~~S~v 174 (439)
..+.+
T Consensus 218 G~g~~ 222 (657)
T PRK08626 218 GYGRI 222 (657)
T ss_pred cccCC
Confidence 87764
No 267
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.45 E-value=1e+02 Score=30.30 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=36.8
Q ss_pred CCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC-ceeEEEeC---CC--cEEEecEEEEecCCCchhhhhh
Q 013625 109 EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLS---DG--TSLYAKLVVGADGGKSRVRELA 178 (439)
Q Consensus 109 ~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~---dg--~~~~adlvVgADG~~S~vR~~l 178 (439)
+.+.++-+++|++++. .+ +.+.+++. .| ++++.|.||-|.|.+=.+-..+
T Consensus 291 ~~v~l~~~~ev~~~~~--------------------~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 291 PDVRLLSLSEVQSVEP--------------------AGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCeeeccccceeeeec--------------------CCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 5689999999999976 33 33777763 23 4899999999999985444444
No 268
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=39.13 E-value=77 Score=32.08 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=28.1
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhc
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 358 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 358 (439)
.+|+.+||+++. | .-+..|+.++..+|..+.+.+.+
T Consensus 431 ~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 431 PKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhc
Confidence 569999999972 1 13567999999999999888764
No 269
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=38.91 E-value=1.1e+02 Score=31.83 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe-CCC-c-EEEe-cEEEEecCCC
Q 013625 96 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDG-T-SLYA-KLVVGADGGK 171 (439)
Q Consensus 96 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg-~-~~~a-dlvVgADG~~ 171 (439)
.|...|.+.+.+.+ ++|+++++|+++..+ ++..+.|.. .+| + .+.+ +-||-|.|-.
T Consensus 218 ~l~~~L~~~~~~~G-v~i~~~t~v~~Li~~-------------------~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 218 ALAAGLFAGVLRAG-IPIWTETSLVRLTDD-------------------GGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred HHHHHHHHHHHHCC-CEEEecCEeeEEEec-------------------CCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 35567888888876 999999999999760 122233322 234 3 4566 5788888888
Q ss_pred chhh
Q 013625 172 SRVR 175 (439)
Q Consensus 172 S~vR 175 (439)
+.-.
T Consensus 278 ~~n~ 281 (564)
T PRK12845 278 DHDM 281 (564)
T ss_pred cccH
Confidence 8653
No 270
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=38.89 E-value=41 Score=34.37 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=44.3
Q ss_pred eeeehHHHHHHHH-----HHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccC-ceeEEEeCCCcEEEecE
Q 013625 90 CVVENKVLHSSLL-----SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDGTSLYAKL 163 (439)
Q Consensus 90 ~~i~R~~l~~~L~-----~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~dg~~~~adl 163 (439)
..-.|.+.++.|+ +.+.+.+|.+|+.+ .|+++.. +++ ..+.|.+.+|..+.|+.
T Consensus 90 Vra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-------------------e~~~~v~GV~t~~G~~~~a~a 149 (621)
T COG0445 90 VRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-------------------EEGQRVVGVVTADGPEFHAKA 149 (621)
T ss_pred hcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-------------------cCCCeEEEEEeCCCCeeecCE
Confidence 4445555555555 45555688888776 6777765 122 36788899999999999
Q ss_pred EEEecCCCc
Q 013625 164 VVGADGGKS 172 (439)
Q Consensus 164 vVgADG~~S 172 (439)
||-+.|..-
T Consensus 150 VVlTTGTFL 158 (621)
T COG0445 150 VVLTTGTFL 158 (621)
T ss_pred EEEeecccc
Confidence 999999643
No 271
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=38.47 E-value=74 Score=31.61 Aligned_cols=46 Identities=2% Similarity=-0.014 Sum_probs=34.1
Q ss_pred hcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCcEEE--ecEEEEecCCCc
Q 013625 106 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGTSLY--AKLVVGADGGKS 172 (439)
Q Consensus 106 ~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~~~~--adlvVgADG~~S 172 (439)
.+.+ ++++.+++|+++.. .+..+.+... ++.++. +|.||-|-|.+.
T Consensus 55 ~~~g-v~~~~~~~V~~id~--------------------~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRG-IDVKTNHEVIEVND--------------------ERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HhcC-CeEEecCEEEEEEC--------------------CCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 4445 89999999999975 3455666543 345777 999999999854
No 272
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=37.40 E-value=79 Score=32.59 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCC-Cc---EEEecEEEEecC
Q 013625 94 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GT---SLYAKLVVGADG 169 (439)
Q Consensus 94 R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~---~~~adlvVgADG 169 (439)
|......++..+.+.++++|+.+++|.+|..+ .+..+.|.+.+ |. ...++.||-|-|
T Consensus 192 r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-------------------~~ra~GV~~~~~~~~~~~~~ak~VIlaAG 252 (532)
T TIGR01810 192 RVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-------------------GNRATGVEFKKGGRKEHTEANKEVILSAG 252 (532)
T ss_pred EEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-------------------CCeEEEEEEEeCCcEEEEEEeeeEEEccC
Confidence 43434444455555678999999999999871 11223344422 22 357888888888
Q ss_pred C-Cch
Q 013625 170 G-KSR 173 (439)
Q Consensus 170 ~-~S~ 173 (439)
. +|+
T Consensus 253 ai~SP 257 (532)
T TIGR01810 253 AINSP 257 (532)
T ss_pred CCCCH
Confidence 7 665
No 273
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=35.89 E-value=65 Score=33.84 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=50.5
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++-.-+.+.|...|...| +.|..++.|+++.. .++....|.+.-| .+++..+|-|-|.
T Consensus 183 ~~DP~~lC~ala~~A~~~G-A~viE~cpV~~i~~-------------------~~~~~~gVeT~~G-~iet~~~VNaaGv 241 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALG-ALVIENCPVTGLHV-------------------ETDKFGGVETPHG-SIETECVVNAAGV 241 (856)
T ss_pred ccCHHHHHHHHHHHHHhcC-cEEEecCCcceEEe-------------------ecCCccceeccCc-ceecceEEechhH
Confidence 4778999999999999998 99999999999976 1234445666555 5889999999999
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
+-+
T Consensus 242 WAr 244 (856)
T KOG2844|consen 242 WAR 244 (856)
T ss_pred HHH
Confidence 874
No 274
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=34.43 E-value=1.2e+02 Score=30.63 Aligned_cols=54 Identities=6% Similarity=0.003 Sum_probs=35.1
Q ss_pred HHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCC--cEEEecEEEEecCCCch
Q 013625 103 SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKSR 173 (439)
Q Consensus 103 ~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg--~~~~adlvVgADG~~S~ 173 (439)
+.+.+.+ +++..+ +++.+..... + ..++.+.|...+| .++.+|.||-|-|.+..
T Consensus 100 ~~~~~~g-v~~~~g-~a~~i~~~~~--------~-------~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 100 ALLKKGK-IDVFHG-IGRILGPSIF--------S-------PMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHhCC-CEEEEE-EEEEeCCCCC--------c-------CCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 3344444 999988 4555543000 0 0234788888887 48999999999998653
No 275
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=34.10 E-value=42 Score=23.86 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=22.2
Q ss_pred HHHHHHCCCchhhhhhhcCccceEEEE
Q 013625 42 ISFFKEIGAWQYVQQHRHAYFDKMQVW 68 (439)
Q Consensus 42 ~~~L~~lGl~~~l~~~~~~~~~~~~~~ 68 (439)
++.|+++|+.+.|.+.|....+.+.+.
T Consensus 37 ~~~L~~~Gv~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 37 ARKLKKLGVEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHCCHHHHHHHcCCCCCCEEEEc
Confidence 678899999999999999767666554
No 276
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.93 E-value=1.3e+02 Score=31.72 Aligned_cols=61 Identities=21% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhcC--------C----CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEE---EeCCCc--
Q 013625 95 KVLHSSLLSCMQNT--------E----FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL---DLSDGT-- 157 (439)
Q Consensus 95 ~~l~~~L~~~~~~~--------~----~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~dg~-- 157 (439)
..+...|.+.+.+. + +|+|+.++.|+++..+ ++..+.+ ...+|+
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-------------------~g~v~Gv~~~~~~~g~~~ 198 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-------------------GGRIAGAFGYWRESGRFV 198 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-------------------CCEEEEEEEEECCCCeEE
Confidence 45777788877665 3 4999999999999760 1122222 234564
Q ss_pred EEEecEEEEecCCCchh
Q 013625 158 SLYAKLVVGADGGKSRV 174 (439)
Q Consensus 158 ~~~adlvVgADG~~S~v 174 (439)
.+.|+-||-|.|..+..
T Consensus 199 ~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 199 LFEAPAVVLATGGIGKS 215 (626)
T ss_pred EEEcCeEEECCCcccCC
Confidence 68999999999985543
No 277
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=32.55 E-value=36 Score=23.94 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=13.0
Q ss_pred CCCcEEEEEcCCCCC
Q 013625 4 TKHLSVAIIDSNPAL 18 (439)
Q Consensus 4 ~~G~~V~viE~~~~~ 18 (439)
++|++|+|+|+.+.+
T Consensus 17 ~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 17 KAGYRVTVFEKNDRL 31 (68)
T ss_dssp HTTSEEEEEESSSSS
T ss_pred HCCCcEEEEecCccc
Confidence 358999999999987
No 278
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.08 E-value=1.2e+02 Score=30.09 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=30.0
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhc
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 358 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 358 (439)
..+|+.+||++..-.+-...-...|+..|..+|..|...+..
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 468999999998633212223456888999999999887753
No 279
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=31.90 E-value=89 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhh
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 357 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 357 (439)
.+|..+||+++. |. -+..|+.+|..+|..|...+.
T Consensus 316 ~~vyaiGD~~~~--~~---~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 316 EGVFAAGDVVTG--PS---KIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCEEEEcccccC--cc---hHHHHHHHHHHHHHHHHHHHh
Confidence 569999999873 21 257888899888888877653
No 280
>PRK06116 glutathione reductase; Validated
Probab=31.61 E-value=1.2e+02 Score=30.48 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=24.3
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHH
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 354 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 354 (439)
..+|..+||++... | -...|+..|..+|+-|..
T Consensus 295 ~~~IyA~GD~~~~~-~----~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 295 VPGIYAVGDVTGRV-E----LTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCEEEEeecCCCc-C----cHHHHHHHHHHHHHHHhC
Confidence 47899999998542 2 245788888888887753
No 281
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=30.97 E-value=1.6e+02 Score=30.44 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=35.5
Q ss_pred cCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-CCc--EEEecEEEEecCCCchhhhhh
Q 013625 107 NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYAKLVVGADGGKSRVRELA 178 (439)
Q Consensus 107 ~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~adlvVgADG~~S~vR~~l 178 (439)
+.++++|+.++.|++|+.+.+ +.+ .-..|++... +|+ ++.|++||-|-|.=-..|=.+
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~---------~~~-----~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNET---------NES-----EIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCC---------CCc-----eeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 567899999999999987211 000 1122333332 454 689998888888544444333
No 282
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=30.53 E-value=1.7e+02 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=28.6
Q ss_pred ceeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeee
Q 013625 88 LGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL 124 (439)
Q Consensus 88 ~~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~ 124 (439)
|...=|-.-|..-....+...+|+++...+.|+++..
T Consensus 150 YVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLiv 186 (328)
T KOG2960|consen 150 YVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIV 186 (328)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhc
Confidence 3344556677788888888889999988888888876
No 283
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=30.34 E-value=1.6e+02 Score=29.54 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCCCch
Q 013625 99 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 173 (439)
Q Consensus 99 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~ 173 (439)
..+.+.+.+.+ ++++.++ +..+. ...++|...+|. ++.+|.||-|-|....
T Consensus 98 ~~~~~~~~~~~-v~~~~g~-~~~~~----------------------~~~~~v~~~~g~~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 98 EVRRGQYERNR-VDLIQGR-ARFVD----------------------PHTVEVECPDGEVETLTADKIVIATGSRPY 150 (461)
T ss_pred HHHHHHHHHCC-CEEEEEE-EEEec----------------------CCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 34455555555 8998874 44443 266788877775 7999999999997643
No 284
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=30.32 E-value=92 Score=21.04 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=21.1
Q ss_pred cEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEE
Q 013625 111 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 160 (439)
Q Consensus 111 v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ 160 (439)
-...+..+|+++.. .....+|.++||++..
T Consensus 19 s~lYYe~kV~~~d~--------------------~~~~y~V~Y~DGtel~ 48 (55)
T PF09465_consen 19 SSLYYEGKVLSYDS--------------------KSDRYTVLYEDGTELE 48 (55)
T ss_dssp TS-EEEEEEEEEET--------------------TTTEEEEEETTS-EEE
T ss_pred CCcEEEEEEEEecc--------------------cCceEEEEEcCCCEEE
Confidence 34556778888865 5688999999998654
No 285
>PLN02815 L-aspartate oxidase
Probab=30.11 E-value=1.5e+02 Score=31.10 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCc---eeEEEe---CCCc--EEEecEEEE
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH---LAKLDL---SDGT--SLYAKLVVG 166 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~v~v~~---~dg~--~~~adlvVg 166 (439)
..+...|.+.+.+.++++|+.++.++++..+ . +++ .+.+.+ .+|+ .+.|+-||-
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~---------~---------~g~~~~v~Gv~~~~~~~g~~~~i~AkaVIL 216 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTS---------Q---------DGGSIVCHGADVLDTRTGEVVRFISKVTLL 216 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeee---------c---------CCCccEEEEEEEEEcCCCeEEEEEeceEEE
Confidence 4577888888877766999999999999861 0 111 233433 4564 678999999
Q ss_pred ecCCCch
Q 013625 167 ADGGKSR 173 (439)
Q Consensus 167 ADG~~S~ 173 (439)
|.|-.+.
T Consensus 217 ATGG~g~ 223 (594)
T PLN02815 217 ASGGAGH 223 (594)
T ss_pred cCCccee
Confidence 9998775
No 286
>PRK07395 L-aspartate oxidase; Provisional
Probab=30.00 E-value=1.1e+02 Score=31.86 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe-CCCc--EEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~--~~~adlvVgADG~~ 171 (439)
..+...|.+.+.+..+++|++++.++++..+ .+ ++..+.|.. .+|. .+.|+-||-|.|..
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~---------~~--------~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLE---------PE--------TGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheec---------CC--------CCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 4577788888876655999999999999761 00 112222322 3554 47899999999986
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
+.
T Consensus 197 ~~ 198 (553)
T PRK07395 197 GQ 198 (553)
T ss_pred cc
Confidence 54
No 287
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=29.57 E-value=1.7e+02 Score=29.19 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=22.6
Q ss_pred ceeEEEeCCCc-EEEecEEEEecCCCch
Q 013625 147 HLAKLDLSDGT-SLYAKLVVGADGGKSR 173 (439)
Q Consensus 147 ~~v~v~~~dg~-~~~adlvVgADG~~S~ 173 (439)
+.+.|...+|. ++.+|.||-|-|.+..
T Consensus 105 ~~~~v~~~~g~~~~~~d~lviATGs~p~ 132 (441)
T PRK08010 105 HSLRVHRPEGNLEIHGEKIFINTGAQTV 132 (441)
T ss_pred CEEEEEeCCCeEEEEeCEEEEcCCCcCC
Confidence 66888888885 7999999999998764
No 288
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.04 E-value=1.5e+02 Score=29.91 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.5
Q ss_pred ceeEEEeCCC--cEEEecEEEEecCCCc
Q 013625 147 HLAKLDLSDG--TSLYAKLVVGADGGKS 172 (439)
Q Consensus 147 ~~v~v~~~dg--~~~~adlvVgADG~~S 172 (439)
..+.|...+| .++.+|.||-|-|.+.
T Consensus 121 ~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 121 NTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred CEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 6678887777 4799999999999764
No 289
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=28.18 E-value=2.1e+02 Score=29.61 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=41.5
Q ss_pred HHHHHHHHHhh---cCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEe---CC--------------
Q 013625 96 VLHSSLLSCMQ---NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SD-------------- 155 (439)
Q Consensus 96 ~l~~~L~~~~~---~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~d-------------- 155 (439)
.+...|.+.+. +.++++|+++++++++..+ ++..+.|.. ++
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-------------------~g~V~Gv~~~~~~~~~~~~~~~~~~~~~ 209 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-------------------DGAVTGVRGTVLEPSDAERGEASSREVV 209 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-------------------CCEEEEEEEEeccccccccccccccccc
Confidence 35566665554 2345999999999999861 122333332 11
Q ss_pred C-cEEEecEEEEecCCCchhhhhh
Q 013625 156 G-TSLYAKLVVGADGGKSRVRELA 178 (439)
Q Consensus 156 g-~~~~adlvVgADG~~S~vR~~l 178 (439)
+ ..+.|+-||-|.|-.+.-.+.+
T Consensus 210 ~~~~i~AkaVILATGGf~~n~em~ 233 (549)
T PRK12834 210 GEFELRAQAVIVTSGGIGGNHELV 233 (549)
T ss_pred ceEEEecCEEEEeCCCcccCHHHH
Confidence 2 2688999999999988765443
No 290
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=27.76 E-value=1.3e+02 Score=30.33 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhc
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 358 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 358 (439)
.+|+.+||++.. ..-+..|+.+|..+|..+...+.+
T Consensus 418 ~~VfA~GD~~~~-----~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 418 PGVFAGGDIVTG-----AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCEEEeCCcCCC-----chHHHHHHHHHHHHHHHHHHHHhc
Confidence 569999999842 124568999999999999888764
No 291
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=27.33 E-value=63 Score=32.39 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=24.0
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHH
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 352 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L 352 (439)
+|+.+.||.-..--| | ++.-|++++..+|+.+
T Consensus 421 ~~l~~AG~~~a~~~~--g-~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 421 PNFFLAGDYTKQKYL--A-SMEGAVLSGKLCAQAI 452 (453)
T ss_pred CCEEEeehhccCccc--c-cHHHHHHHHHHHHHHh
Confidence 789999988543322 2 8888899998888765
No 292
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=27.16 E-value=1.8e+02 Score=28.92 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=36.8
Q ss_pred CcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCC--Cchhhhhh
Q 013625 110 FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGG--KSRVRELA 178 (439)
Q Consensus 110 ~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~--~S~vR~~l 178 (439)
+++++.++.|..+.. ..+.+...||+ ++..-++|.|-|. +..++..+
T Consensus 287 ~I~~~~~t~Vk~V~~----------------------~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm 337 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTE----------------------KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLM 337 (491)
T ss_pred cceeecccEEEeecC----------------------cEEEEEcCCCceeeecceEEEecCCCCCchhhhhHh
Confidence 499999999999955 67778777885 7889999999996 33344444
No 293
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=26.53 E-value=1.2e+02 Score=29.96 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=44.3
Q ss_pred eeehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCC
Q 013625 91 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 170 (439)
Q Consensus 91 ~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 170 (439)
.++..+...-+.+.+...+++++..+ +|++|+. ..-+|.++++..+.+|+||-|=|.
T Consensus 53 ~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~----------------------~~k~V~~~~~~~i~YD~LVvalGs 109 (405)
T COG1252 53 TLSESEIAIPLRALLRKSGNVQFVQG-EVTDIDR----------------------DAKKVTLADLGEISYDYLVVALGS 109 (405)
T ss_pred CCChhheeccHHHHhcccCceEEEEE-EEEEEcc----------------------cCCEEEeCCCccccccEEEEecCC
Confidence 35555555556666665556888776 8999976 555677777889999999999997
Q ss_pred Cch
Q 013625 171 KSR 173 (439)
Q Consensus 171 ~S~ 173 (439)
...
T Consensus 110 ~~~ 112 (405)
T COG1252 110 ETN 112 (405)
T ss_pred cCC
Confidence 664
No 294
>PRK14694 putative mercuric reductase; Provisional
Probab=26.32 E-value=1.7e+02 Score=29.59 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=32.7
Q ss_pred CCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCc--EEEecEEEEecCCCch
Q 013625 108 TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 173 (439)
Q Consensus 108 ~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~ 173 (439)
..++++..+ +++.++. +.+.|++.+|. ++++|.||-|-|.+..
T Consensus 109 ~~~v~~~~g-~v~~id~----------------------~~~~V~~~~g~~~~~~~d~lViATGs~p~ 153 (468)
T PRK14694 109 NAAITVLNG-EARFVDE----------------------RTLTVTLNDGGEQTVHFDRAFIGTGARPA 153 (468)
T ss_pred CCCeEEEEE-EEEEecC----------------------CEEEEEecCCCeEEEECCEEEEeCCCCCC
Confidence 334888887 5777744 56888888774 7999999999998653
No 295
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=25.09 E-value=66 Score=22.86 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=18.9
Q ss_pred HHHHHHCCCchhhhhhhcCccceEEE
Q 013625 42 ISFFKEIGAWQYVQQHRHAYFDKMQV 67 (439)
Q Consensus 42 ~~~L~~lGl~~~l~~~~~~~~~~~~~ 67 (439)
++.|+.+|+.+.|.++|....+.+.+
T Consensus 37 ~~~L~~~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 37 QRKLKKMGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHHTTHHHHHHTTT--TT-EEEE
T ss_pred HHHHHHCCHHHHHHHcCCCCCCEEEE
Confidence 67889999999999999966666544
No 296
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=24.47 E-value=1.1e+02 Score=29.50 Aligned_cols=38 Identities=34% Similarity=0.499 Sum_probs=33.6
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 359 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 359 (439)
+.||.++| ++|+.|+|-.++-|+...+.-++.+..+.+
T Consensus 207 ~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~~G 244 (336)
T PRK05312 207 SPRLAVAG-----LNPHAGEGGALGREDIDIIAPAIEQLRAEG 244 (336)
T ss_pred CCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 46898888 999999999999999999999999976554
No 297
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=3.6e+02 Score=24.45 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=40.7
Q ss_pred eehHHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCC
Q 013625 92 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 171 (439)
Q Consensus 92 i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 171 (439)
+.=.+|...+.+...+.| .+|.. ..|.++.. ......|.. |...+.+|-||-|.|+.
T Consensus 67 i~G~~l~d~mrkqs~r~G-t~i~t-EtVskv~~--------------------sskpF~l~t-d~~~v~~~avI~atGAs 123 (322)
T KOG0404|consen 67 ITGPELMDKMRKQSERFG-TEIIT-ETVSKVDL--------------------SSKPFKLWT-DARPVTADAVILATGAS 123 (322)
T ss_pred cccHHHHHHHHHHHHhhc-ceeee-eehhhccc--------------------cCCCeEEEe-cCCceeeeeEEEecccc
Confidence 556888888888887776 55544 36666665 335555555 66789999999999964
No 298
>PLN02487 zeta-carotene desaturase
Probab=24.09 E-value=69 Score=33.37 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=29.5
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHh
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG 355 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~ 355 (439)
.+++|.||=-..--| .+++-|+.++..+|+.|...
T Consensus 518 ~nl~LAGD~t~~~yP---at~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 518 SNFFLAGSYTKQDYI---DSMEGATLSGRQAAAYICEA 552 (569)
T ss_pred CCEEEeCcccccCCc---chHHHHHHHHHHHHHHHHHH
Confidence 589999998887777 48888999999999888765
No 299
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=24.08 E-value=2.3e+02 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=24.4
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHH
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 354 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 354 (439)
..+|..+||+++. | .-...|+.+|..+|..|..
T Consensus 301 ~~~VyAiGD~~~~--~---~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 301 VPNIYAIGDIVGG--P---MLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCCEEEeeecCCC--c---chHHHHHHHHHHHHHHHcC
Confidence 4689999999863 1 2356788888888877754
No 300
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=23.95 E-value=2.8e+02 Score=27.90 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 169 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 169 (439)
.+|-|...+.+.-.| .++..++.|.++.. ++ ++..+.|. .+|++++|+.||+...
T Consensus 232 GELpQ~FcRl~AV~G-G~Y~L~~~i~~i~~---------~~---------~g~~~gV~-s~ge~v~~k~vI~dps 286 (438)
T PF00996_consen 232 GELPQAFCRLSAVYG-GTYMLNRPIDEIVV---------DE---------DGKVIGVK-SEGEVVKAKKVIGDPS 286 (438)
T ss_dssp THHHHHHHHHHHHTT--EEESS--EEEEEE---------ET---------TTEEEEEE-ETTEEEEESEEEEEGG
T ss_pred ccHHHHHHHHhhhcC-cEEEeCCccceeee---------ec---------CCeEEEEe-cCCEEEEcCEEEECCc
Confidence 688888888777777 79999999999976 11 12334444 4889999999997654
No 301
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=23.43 E-value=84 Score=30.80 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCC--C--CCCcE---EeeCHhHHHHHHHCCCchhhh
Q 013625 4 TKHLSVAIIDSNPALGKSNFIKKED--P--PDPRV---STVTPATISFFKEIGAWQYVQ 55 (439)
Q Consensus 4 ~~G~~V~viE~~~~~~~~~~~~~~~--~--~~~~~---~~l~p~~~~~L~~lGl~~~l~ 55 (439)
.+|++|+|+|+++.+-......... . ....+ ....++..++++++|+...+.
T Consensus 8 ~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 66 (419)
T TIGR03467 8 RAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQ 66 (419)
T ss_pred hCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhh
Confidence 4699999999999764443211111 1 11112 234588899999999876543
No 302
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=23.35 E-value=81 Score=30.19 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=27.9
Q ss_pred eeeeehHHHHHHHHHHhhcCCCcEEEcCCeeEEe
Q 013625 89 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 122 (439)
Q Consensus 89 ~~~i~R~~l~~~L~~~~~~~~~v~v~~~~~v~~i 122 (439)
+..++|..|-+.+.+.+.+++.|+|+.+ +|+.+
T Consensus 94 ALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i 126 (439)
T COG1206 94 ALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI 126 (439)
T ss_pred eeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence 3789999999999999999998988775 55555
No 303
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=23.24 E-value=1.3e+02 Score=28.93 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=33.6
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 359 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 359 (439)
+.||.+.| ++|+.|+|-.++-|+-..+.-++.+..+.+
T Consensus 202 ~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~~G 239 (332)
T PRK00232 202 EPRIAVCG-----LNPHAGEGGHFGREEIDIIIPALEELRAEG 239 (332)
T ss_pred CCcEEEEe-----eCCCCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 46898888 999999999999999999999999976554
No 304
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=23.18 E-value=1.2e+02 Score=29.09 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=33.5
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 359 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 359 (439)
+.||.++| ++|+.|+|-.++-|+...+.-++.+..+.+
T Consensus 198 ~PrIaV~G-----LNPHAGE~G~~G~EE~~iI~PAi~~~~~~G 235 (329)
T PRK01909 198 APRILVTG-----LNPHAGENGYLGREEIDVIEPALARARAAG 235 (329)
T ss_pred CCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 46898888 999999999999999999999999876543
No 305
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=22.85 E-value=1.2e+02 Score=28.88 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=33.5
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 359 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 359 (439)
+.||.++| ++|+.|+|-.++-|+...+.-++.+..+.+
T Consensus 195 ~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAI~~~~~~G 232 (320)
T TIGR00557 195 RPRIAVAG-----LNPHAGEGGHLGREEIDIIIPALEALRAEG 232 (320)
T ss_pred CCCEEEEe-----cCCCCCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 47898888 999999999999999999999999876543
No 306
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=22.76 E-value=2.4e+02 Score=28.28 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=24.3
Q ss_pred CCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHh
Q 013625 318 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG 355 (439)
Q Consensus 318 ~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~ 355 (439)
.+|+.+||+++. | .-+..|+.++..+|..+.+.
T Consensus 416 ~~VfA~GD~~~g--~---~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 416 PGVFAGGDIILG--A---ATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CCEEEecCCCCC--c---HHHHHHHHHHHHHHHHHHhh
Confidence 459999999852 1 23567888888888888764
No 307
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=22.61 E-value=1.2e+02 Score=28.96 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.3
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 359 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 359 (439)
+.||.+.| ++|+.|+|-.++-|+...+.-++.+..+.+
T Consensus 201 ~PrIaV~g-----LNPHAGE~G~~G~EE~~iI~PAi~~~~~~G 238 (326)
T PRK03371 201 KPRIAVAG-----VNPHAGENGLFGDEEIRIVTPAIEAMRAKG 238 (326)
T ss_pred CCCEEEEe-----eCCCCCCCCCCcHHHHHHHHHHHHHHHHCC
Confidence 46798888 999999999999999999999998876543
No 308
>PLN02546 glutathione reductase
Probab=22.52 E-value=2.2e+02 Score=29.66 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCch
Q 013625 97 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 173 (439)
Q Consensus 97 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 173 (439)
+...+.+.+.+.+ |+++.| +++.+.. ..+.+ +|+++.+|.||-|-|.+..
T Consensus 180 l~~~~~~~l~~~g-V~~i~G-~a~~vd~----------------------~~V~v---~G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 180 LTGIYKNILKNAG-VTLIEG-RGKIVDP----------------------HTVDV---DGKLYTARNILIAVGGRPF 229 (558)
T ss_pred HHHHHHHHHHhCC-cEEEEe-EEEEccC----------------------CEEEE---CCEEEECCEEEEeCCCCCC
Confidence 4455555566665 898876 4444432 44444 6788999999999997653
No 309
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=22.01 E-value=3.1e+02 Score=28.99 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEE-EeCCCc--EEEecEEEEecCCC
Q 013625 95 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGGK 171 (439)
Q Consensus 95 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~dg~--~~~adlvVgADG~~ 171 (439)
+.+.+.|...+.+.+ ++|+.++.++++..+ .+.++ .-.+|.+ ...+|+ .+.|+-||-|.|..
T Consensus 126 ~~~~r~l~~~l~~~~-~~i~~~~~v~~Ll~d---------~~~~G-----rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 126 ESYKPIVAEAAKNAL-GDIFERIFIVKLLLD---------KNTPN-----RIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hhHHHHHHHHHHhCC-CeEEcccEEEEEEec---------CCCCC-----eEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 345556666666654 799999999999861 00000 1123333 234565 68899999999998
Q ss_pred ch
Q 013625 172 SR 173 (439)
Q Consensus 172 S~ 173 (439)
+.
T Consensus 191 ~~ 192 (614)
T TIGR02061 191 VN 192 (614)
T ss_pred cc
Confidence 74
No 310
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=21.51 E-value=1.7e+02 Score=29.68 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=40.2
Q ss_pred eehHHHHHHHHHH-----hhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEE
Q 013625 92 VENKVLHSSLLSC-----MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVG 166 (439)
Q Consensus 92 i~R~~l~~~L~~~-----~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVg 166 (439)
=.|+.+++-|++. +...++.+|+.+ .|.++.. ...+++ +-....|.+.||+.+.|+-||-
T Consensus 116 g~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv---------~~~~~~-----~~~~~gV~l~dgt~v~a~~Vil 180 (679)
T KOG2311|consen 116 GLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIV---------EDPDDG-----HCVVSGVVLVDGTVVYAESVIL 180 (679)
T ss_pred ChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheee---------ccCCCC-----ceEEEEEEEecCcEeccceEEE
Confidence 3455555555554 444567788776 5666654 111111 1124557789999999999999
Q ss_pred ecCCC
Q 013625 167 ADGGK 171 (439)
Q Consensus 167 ADG~~ 171 (439)
..|..
T Consensus 181 TTGTF 185 (679)
T KOG2311|consen 181 TTGTF 185 (679)
T ss_pred eeccc
Confidence 99853
No 311
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=21.24 E-value=1.4e+02 Score=28.45 Aligned_cols=39 Identities=31% Similarity=0.467 Sum_probs=34.3
Q ss_pred cCCEEEEcccccccCCcccccchhcHHHHHHHHHHHHHhhhcCC
Q 013625 317 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA 360 (439)
Q Consensus 317 ~~rvvLvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~ 360 (439)
..|+...| ++|+.|+|..++-|+-..+.-++.+.-+.+-
T Consensus 201 ~PriaVaG-----LNPHaGE~G~lG~EE~diI~Paie~aR~~Gi 239 (332)
T COG1995 201 EPRIAVAG-----LNPHAGEGGLLGREEIDIIIPAIEEARAEGI 239 (332)
T ss_pred CcceEEec-----cCCCCCcCCCCCchhHHHHHHHHHHHHHhCC
Confidence 46898888 9999999999999999999999988766543
No 312
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=21.00 E-value=1.7e+02 Score=31.34 Aligned_cols=49 Identities=6% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHhhcCCCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeCCCcEEEecEEEEecCCCchh
Q 013625 103 SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 174 (439)
Q Consensus 103 ~~~~~~~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 174 (439)
+...+++ ++++.+++|+.+.. ..-.|+.++|.++.+|=||-|.|..=.+
T Consensus 67 dwy~~~~-i~L~~~~~v~~idr----------------------~~k~V~t~~g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 67 DWYEENG-ITLYTGEKVIQIDR----------------------ANKVVTTDAGRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred hhHHHcC-cEEEcCCeeEEecc----------------------CcceEEccCCcEeecceeEEecCccccc
Confidence 4456666 99999999999976 6667888999999999999999976544
No 313
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=20.04 E-value=3.4e+02 Score=31.20 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcC--CCcEEEcCCeeEEeeeCCCCCCcccCCCCCcccccccCceeEEEeC-----CCc--EEEecEEEE
Q 013625 96 VLHSSLLSCMQNT--EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-----DGT--SLYAKLVVG 166 (439)
Q Consensus 96 ~l~~~L~~~~~~~--~~v~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-----dg~--~~~adlvVg 166 (439)
.+...|.+.+.+. .+++|+++++++++..+.+.. ++++ .....+.|..+ +|+ .+.|+-||-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~------~~G~----~~~~V~Gv~~~~~~~~~g~~~~i~AkaVIL 614 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSAR------PDGV----REIRVTGVRYKQASDASGQVMDLLADAVIL 614 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcc------cCCC----ccceEEEEEEEecccCCCcEEEEEeceEEE
Confidence 3455566665543 349999999999998721100 0000 00122333332 564 688999999
Q ss_pred ecCCCch
Q 013625 167 ADGGKSR 173 (439)
Q Consensus 167 ADG~~S~ 173 (439)
|.|-.+.
T Consensus 615 ATGGf~~ 621 (1167)
T PTZ00306 615 ATGGFSN 621 (1167)
T ss_pred ecCCccc
Confidence 9998775
Done!