BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013626
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/439 (82%), Positives = 397/439 (90%), Gaps = 3/439 (0%)
Query: 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
M + SS + +K +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AI
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
Query: 301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360
G+YDMCHRYLKERKQFGAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG
Sbjct: 301 GIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQ 360
Query: 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420
ASLGK+WI+++ARET +LGRELLGGNGIL+DFLVAKAFCD+EPIYTYEGTYDINTLVTGR
Sbjct: 361 ASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGR 420
Query: 421 EVTGIASFKPVALATRSRL 439
EVTGIASFKP ATRSRL
Sbjct: 421 EVTGIASFKP---ATRSRL 436
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/439 (82%), Positives = 397/439 (90%), Gaps = 3/439 (0%)
Query: 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
M + SS + +K +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AI
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
Query: 301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360
G+YDMCHRYLKERKQFGAPLAAFQ+NQQKLVQMLGN+QAM L+GWRLCKLYE G MTPG
Sbjct: 301 GIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQ 360
Query: 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420
ASLGK+WI+++ARET +LGRELLGGNGIL+DFLVAKAFCD+EPIYTYEGTYDINTLVTGR
Sbjct: 361 ASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGR 420
Query: 421 EVTGIASFKPVALATRSRL 439
EVTGIASFKP ATRSRL
Sbjct: 421 EVTGIASFKP---ATRSRL 436
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/384 (36%), Positives = 216/384 (56%), Gaps = 3/384 (0%)
Query: 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK 106
D+Y +DLLT EE+ V+ R +EKE P + ++WE+ FP H+IP+ L G T+
Sbjct: 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62
Query: 107 -GYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
YG G S + E+ RVD+ +F+ V SSL M I GSEEQK+++LP LA+
Sbjct: 63 PEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLAR 122
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFARNTTT 224
+ C+ LTEP GSD T + EG W+L G K WI N A + VI+A++
Sbjct: 123 GEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEG- 181
Query: 225 NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL 284
++ G+LV D PG +++ K+ LR +++L++V VP+ RLP + L
Sbjct: 182 GEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCL 241
Query: 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVG 344
+R +AW +G VY+ + K R FG PLA Q+ Q KL +ML +L+
Sbjct: 242 TQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLA 301
Query: 345 WRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPI 404
WRL +L ++G +TP SL K +A + + R++LGG+GI ++ + ++E +
Sbjct: 302 WRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLETV 361
Query: 405 YTYEGTYDINTLVTGREVTGIASF 428
YTYEGT+D++TLV GRE+TG+ +F
Sbjct: 362 YTYEGTHDVHTLVLGREITGLNAF 385
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 206/386 (53%), Gaps = 3/386 (0%)
Query: 45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIP-KLGALRVAGG 103
A D + +L++EE+ +R VR +++ I P +A ++E E P + +LG L + G
Sbjct: 20 ADDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGM 79
Query: 104 TIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
+KGYGC G S +A E+ D+ + + V SLAM I GS+EQK ++LP +
Sbjct: 80 HLKGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDM 139
Query: 164 AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223
A + I C+ LTEP +GSD + + T AT+ WIL G K WI N + ADV V++AR T
Sbjct: 140 ASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWAR--T 197
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKV 283
I G++V D PG T I++K+ LR +++L V +PD RLPG S +
Sbjct: 198 DEGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLGAPLRC 257
Query: 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILV 343
L +R + + +G + + Y R+QF P+ FQ+ QQKL M L+
Sbjct: 258 LNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLL 317
Query: 344 GWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEP 403
L + + G + P SLGK A E R +LG +GI ++ V + ++E
Sbjct: 318 ALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLES 377
Query: 404 IYTYEGTYDINTLVTGREVTGIASFK 429
+ TYEGT +++TL+ G+ +TG+ +F+
Sbjct: 378 VLTYEGTSEMHTLIIGQALTGVGAFR 403
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 210/386 (54%), Gaps = 3/386 (0%)
Query: 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
D D L +E+ VR + ++AP + E + + ++G + + G TI
Sbjct: 13 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTI 72
Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
+ YG PG + E+ RVD+ + + V SSL M+ I GS+ QK+KYLP LA
Sbjct: 73 PEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLA 132
Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NT 222
I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS ADV V++A+
Sbjct: 133 TGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDED 192
Query: 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
++I G++++K GL+ I K+GLR G+I+L + FVP+E+ LP V +
Sbjct: 193 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT 252
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
L +R +AW +G + + + +Y+ +RKQFG PLAA Q+ Q+KL M I +
Sbjct: 253 CLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQ 312
Query: 343 VGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402
RL ++ ++G S+ K +A + L R++LGGNGI +F VA+ ++E
Sbjct: 313 GVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLE 372
Query: 403 PIYTYEGTYDINTLVTGREVTGIASF 428
+ TYEGT+DI+ L+ GR TGI +F
Sbjct: 373 VVNTYEGTHDIHALILGRAQTGIQAF 398
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 210/386 (54%), Gaps = 3/386 (0%)
Query: 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
D D L +E+ VR + ++AP + E + + ++G + + G TI
Sbjct: 10 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTI 69
Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
+ YG PG + E+ RVD+ + + V SSL M+ I GS+ QK+KYLP LA
Sbjct: 70 PEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLA 129
Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NT 222
I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS ADV V++A+
Sbjct: 130 TGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDED 189
Query: 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
++I G++++K GL+ I K+GLR G+I+L + FVP+E+ LP V +
Sbjct: 190 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT 249
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
L +R +AW +G + + + +Y+ +RKQFG PLAA Q+ Q+KL M I +
Sbjct: 250 CLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQ 309
Query: 343 VGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402
RL ++ ++G S+ K +A + L R++LGGNGI +F VA+ ++E
Sbjct: 310 GVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLE 369
Query: 403 PIYTYEGTYDINTLVTGREVTGIASF 428
+ TYEGT+DI+ L+ GR TGI +F
Sbjct: 370 VVNTYEGTHDIHALILGRAQTGIQAF 395
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 210/386 (54%), Gaps = 3/386 (0%)
Query: 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI 105
D D L +E+ VR + ++AP + E + + ++G + + G TI
Sbjct: 9 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTI 68
Query: 106 -KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA 164
+ YG PG + E+ RVD+ + + V SSL M+ I GS+ QK+KYLP LA
Sbjct: 69 PEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLA 128
Query: 165 QLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR--NT 222
I C+ LTEP +GSD ++ T A KV GG+ L G K WI NS ADV V++A+
Sbjct: 129 TGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDED 188
Query: 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282
++I G++++K GL+ I K+GLR G+I+L + FVP+E+ LP V +
Sbjct: 189 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT 248
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
L +R +AW +G + + + +Y+ +RKQFG PLAA Q+ Q+KL M I +
Sbjct: 249 CLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQ 308
Query: 343 VGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402
RL ++ ++G S+ K +A + L R++LGGNGI +F VA+ ++E
Sbjct: 309 GVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLE 368
Query: 403 PIYTYEGTYDINTLVTGREVTGIASF 428
+ TYEGT+DI+ L+ GR TGI +F
Sbjct: 369 VVNTYEGTHDIHALILGRAQTGIQAF 394
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 202/380 (53%), Gaps = 3/380 (0%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
++ LT++E +R R ++ + P + F +I ++G L V G TIKGYGC
Sbjct: 12 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G S + E+ RVD+ + + V SSL M I GSEEQ+QKYLP LA+ +
Sbjct: 72 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
C+ LTEP GSD S++ T A + L G K WI NS AD+ V++AR I
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSR 288
G+L++K GL+ +I+ K LR G I++ V VP+E+ LPG +S L +R
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNAR 250
Query: 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348
+AW +G S +Y +R QFG PLA Q+ Q+KL ML I + +L
Sbjct: 251 YGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLG 310
Query: 349 KLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYE 408
+L ++ P SL K +A + R++LGGNGI ++ V + ++E + TYE
Sbjct: 311 RLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYE 370
Query: 409 GTYDINTLVTGREVTGIASF 428
GT+DI+ L+ GR +TGI +F
Sbjct: 371 GTHDIHALILGRAITGIQAF 390
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 202/380 (53%), Gaps = 3/380 (0%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
++ LT++E +R R ++ + P + F +I ++G L V G TIKGYGC
Sbjct: 10 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 69
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G S + E+ RVD+ + + V SSL M I GSEEQ+QKYLP LA+ +
Sbjct: 70 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
C+ LTEP GSD S++ T A + L G K WI NS AD+ V++AR I
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSR 288
G+L++K GL+ +I+ K LR G I++ V VP+E+ LPG +S L +R
Sbjct: 189 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNAR 248
Query: 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348
+AW +G S +Y +R QFG PLA Q+ Q+KL ML I + +L
Sbjct: 249 YGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLG 308
Query: 349 KLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYE 408
+L ++ P SL K +A + R++LGGNGI ++ V + ++E + TYE
Sbjct: 309 RLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYE 368
Query: 409 GTYDINTLVTGREVTGIASF 428
GT+DI+ L+ GR +TGI +F
Sbjct: 369 GTHDIHALILGRAITGIQAF 388
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 136/380 (35%), Positives = 202/380 (53%), Gaps = 3/380 (0%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGC 110
++ LT++E +R R ++ + P + F +I ++G L V G TIKGYGC
Sbjct: 12 LEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGC 71
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G S + E+ RVD+ + + V SSL M I GSEEQ+QKYLP LA+ +
Sbjct: 72 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 131
Query: 171 CWALTEPAYGSDASALNTTA--TKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQIN 228
C+ LTEP GSD S++ T A + L G K WI NS AD+ V++AR I
Sbjct: 132 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR-CEDGCIR 190
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSR 288
G+L++K GL+ +I+ K LR G I++ V VP+E+ LPG +S L +R
Sbjct: 191 GFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNAR 250
Query: 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348
+AW +G S +Y +R QFG PLA Q+ Q+KL ML I + +L
Sbjct: 251 YGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLG 310
Query: 349 KLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYE 408
+L ++ P SL K +A + R++LGGNGI ++ V + ++E + TY+
Sbjct: 311 RLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYD 370
Query: 409 GTYDINTLVTGREVTGIASF 428
GT+DI+ L+ GR +TGI +F
Sbjct: 371 GTHDIHALILGRAITGIQAF 390
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 214 bits (546), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 204/396 (51%), Gaps = 8/396 (2%)
Query: 37 PASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLG 96
P+ K + + D LL +E+ + VR+ ++ + P + ++E A P + + G
Sbjct: 8 PSKKSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFG 67
Query: 97 ALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156
L V G ++GYGC G + +A E+ D+ +F+ V SL+M +I GSEEQK
Sbjct: 68 NLGVLGMHLQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQK 127
Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216
++LP LA + I C+ LTEP +GS+ + + T A + WIL G K WI N ADV
Sbjct: 128 NEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVAT 187
Query: 217 IFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS 276
++A+ T + I G+LV D PG T +I K+ LR +++L V +P +LP
Sbjct: 188 VWAQ--TDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEG 245
Query: 277 FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGN 336
L +R + + +G + + Y + R+ F PL+ +Q+ Q+KL M
Sbjct: 246 LSAPLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVE 305
Query: 337 IQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRE---LLGGNGILSDFL 393
+ +L+ L ++ + + P SLGK RE +A+ RE LLGG+GI ++
Sbjct: 306 LGKGMLLAIHLGRIKDAEGVRPEQISLGK---LNNVREAIAIARECRTLLGGSGITLEYS 362
Query: 394 VAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFK 429
+ ++E + TYEGT +++ L G+ +TG A+F+
Sbjct: 363 PLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAFR 398
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 183/369 (49%), Gaps = 7/369 (1%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
L Q +R R+ EKE+ PI A+ ++ FP + K+G L + + + G
Sbjct: 10 LPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGL 69
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
+IA+ EI+R AS + V++SL + I GS +QKQ+++ + I C+A
Sbjct: 70 DYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFA 129
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ---INGY 230
L+EP GSDA A +TTA + W+L G K WI NS A V+FA + Q I+ +
Sbjct: 130 LSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAF 189
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGVNSFQDTSKVLAVSR 288
LV PGLT+ K E+K+G+R +++ + +P E+ L PG+ F+ + L + R
Sbjct: 190 LVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMG-FKIAMQTLDMGR 248
Query: 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348
+ +A Q +GI+ D +Y + R FGAPL Q Q KL M +++ L+ WR
Sbjct: 249 IGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLTWRAA 308
Query: 349 KLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYE 408
L + +++ K + A ++LGG G +++ + + D YE
Sbjct: 309 MLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITEIYE 368
Query: 409 GTYDINTLV 417
GT +I LV
Sbjct: 369 GTSEIQRLV 377
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/377 (33%), Positives = 179/377 (47%), Gaps = 17/377 (4%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI----KGYGC 110
L E A+R +R EKEIAP AE EKA FP L AL +G + + YG
Sbjct: 19 LPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA---LAALNSSGFSAIHVPEEYGG 75
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G I I E+ARVD S S V+ L + + L GSEE K++ LP++A +A
Sbjct: 76 QGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI---GNSTFADVLVIFARNTTTNQI 227
+AL+E GSDA+++ T A WIL G K WI G ST+ V+ + + N I
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL---PGVNSFQDTSKVL 284
+ ++V KD G TV E K+G++ ++ + +P DR+ PG F+ L
Sbjct: 195 SAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPG-DRIIGEPGTG-FKTALATL 252
Query: 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVG 344
+R + Q +GI+ G D Y KERKQFG P++ Q Q L M I+A L+
Sbjct: 253 DHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMV 312
Query: 345 WRLCKLYEKGAMTPGHASLG-KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEP 403
+ E+G G S K + + A E +L GG G DF V + D +
Sbjct: 313 YSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKI 372
Query: 404 IYTYEGTYDINTLVTGR 420
YEGT I +V R
Sbjct: 373 TQIYEGTNQIQRVVMSR 389
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 180/369 (48%), Gaps = 7/369 (1%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
L Q + R+ EKE+ PI A+ ++ FP + K+G L + + + G G
Sbjct: 6 LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGL 65
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
AIA+ EI+R AS + V++SL + I GS+EQKQ ++ + I C+A
Sbjct: 66 DYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFA 125
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQINGY 230
L+EP GSDA A +TTA W+L G K WI N+ A V+FA R I+ +
Sbjct: 126 LSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAF 185
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGVNSFQDTSKVLAVSR 288
LV PGLT+ K E+K+G+R +++ + +P + L PG+ F+ + L + R
Sbjct: 186 LVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMG-FKIAMQTLDMGR 244
Query: 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348
+ +A Q +GI+ D Y + R FGAPL Q+ Q KL M +++ L+ WR
Sbjct: 245 IGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAA 304
Query: 349 KLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYE 408
L + A++ K + A ++LGG G +++ + + D YE
Sbjct: 305 MLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYE 364
Query: 409 GTYDINTLV 417
GT +I LV
Sbjct: 365 GTSEIQRLV 373
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 190/378 (50%), Gaps = 8/378 (2%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
D LT E++ ++ R ++ I P+ EY EK E P+ VI KL + + I + YG
Sbjct: 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G + I E+A T I + S L + + L G+EEQK+++L L + +
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGIYT-IPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
A +AL+EP GSDA+AL T A + ++L G K WI N A+ +V+FA + G
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKG 179
Query: 230 ---YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLA 285
+V++ PG KI K+G R +++ + V VP E+RL F+ + L
Sbjct: 180 VVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN 239
Query: 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGW 345
+R+ VA +G++ D +Y KER+ FG P+A FQ Q KLV ML I+ + +
Sbjct: 240 KTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTY 299
Query: 346 RLCKLYEKGAMTPGHAS-LGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPI 404
L ++G + HAS + K++ + A E ++ GG G + +F V K D++
Sbjct: 300 YAAWLADQG-LPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLN 358
Query: 405 YTYEGTYDINTLVTGREV 422
YEGT +I L+ R +
Sbjct: 359 QIYEGTNEIQRLIIARHI 376
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 181/365 (49%), Gaps = 6/365 (1%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGH 113
T EE ++ V++ +++IAP+++ E ++ VI L + G + YG G
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGA 88
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
S + I E+A+VDAS + F + ++L I G+EEQK YLP L + +
Sbjct: 89 SFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFC 147
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT---NQINGY 230
L+E GSD+ AL T A K ++L G K WI ++ A + ++ A T I +
Sbjct: 148 LSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSF 207
Query: 231 LVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289
LV +D PGL + K ENK+GLR + + V VP+ + L + + ++ L R+
Sbjct: 208 LVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRI 267
Query: 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCK 349
+A Q +G++ G +D Y+KER QFG L FQ Q ++ + ++A L+ + +
Sbjct: 268 GIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAAR 327
Query: 350 LYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEG 409
L E G AS+ K + + A +T + E +GG G D+ V K F D + YEG
Sbjct: 328 LLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEG 387
Query: 410 TYDIN 414
+I
Sbjct: 388 ASNIQ 392
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 124/376 (32%), Positives = 190/376 (50%), Gaps = 16/376 (4%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGH 113
LT E++ V VR + + P+ EY KAE+P+ + L L + G T + +G G
Sbjct: 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGL 62
Query: 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWA 173
A+A+ E+A D S + + V S L + GSE QK++YL LA+ I +
Sbjct: 63 DSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFC 122
Query: 174 LTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK 233
LTEP GSDA +L A +V+GG++L G K WI ++ A + V+ AR T I+ +LV+
Sbjct: 123 LTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMAR--TEKGISAFLVE 180
Query: 234 KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVS------ 287
K PGL+ + E K+GL ++ L++VFVP+E N + + LA +
Sbjct: 181 KGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEE------NLLGEEGRGLAYALAGLDS 234
Query: 288 -RVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWR 346
RV VA Q +GI+ G +++ Y +ER+QFG L Q K+ M I A +
Sbjct: 235 GRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLE 294
Query: 347 LCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYT 406
+ ++G AS K + +A A E ++LGG G D+ V + + D +
Sbjct: 295 AARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEI 354
Query: 407 YEGTYDINTLVTGREV 422
YEGT +I LV RE+
Sbjct: 355 YEGTSEIQRLVIAREL 370
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 180/375 (48%), Gaps = 9/375 (2%)
Query: 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSV 115
+EE+ V RE ++ E+AP AE FP+ ++ KL V G + + YG G S
Sbjct: 9 AEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLST 68
Query: 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALT 175
A + IA D + + + H+SLA I L GSE QK+ +LP LA + W LT
Sbjct: 69 RLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLT 128
Query: 176 EPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFAR-------NTTTNQIN 228
EP GSDA+AL T A KVEGGW L G K++I + A V V+ AR I+
Sbjct: 129 EPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGIS 188
Query: 229 GYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVS 287
+ + GL V + E K+GL ++L+ +FVP+E L F D +VL
Sbjct: 189 AFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGG 248
Query: 288 RVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRL 347
R+ +A +G+ D Y K R+ FG P+A F+ KL + ++A L+ +
Sbjct: 249 RIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKA 308
Query: 348 CKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTY 407
+L + G A+ K + + A + ++LGG G + D+ V + + D
Sbjct: 309 AELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIG 368
Query: 408 EGTYDINTLVTGREV 422
EGT +I LV R +
Sbjct: 369 EGTSEILKLVIARRL 383
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/388 (28%), Positives = 182/388 (46%), Gaps = 28/388 (7%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHV--IPKLGALRVAGGTI-KGYGCP 111
+SE + + + + E+ P + EY E+ EF V + + G L + G + + YG
Sbjct: 33 FSSEHKXIAKTTEDFIVNEVLPEL-EYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
G +A+ + +R T H + L I L G+EEQK+KYLP LA +A
Sbjct: 92 GLDKVSSALIAEKFSRAGGFAITH-GAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 172 WALTEPAYGSDASALNTTAT-KVEG-GWILEGQKRWIGNSTFADVLVIFARNTTTNQING 229
+ALTEP GSDA TTA EG ++L G+K+WI NS FADV +++A+ +
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAK-IDGEHFSA 209
Query: 230 YLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS-KVLAVSR 288
++V+KD G++ + E K G++ ++L+ VP E+ L + + +L + R
Sbjct: 210 FIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGR 269
Query: 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348
+ +G + ++ +Y +R+QF P+A F + Q+KL A +R
Sbjct: 270 YKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYAAESSVYRTV 329
Query: 349 KLYEKGAMT-------PGHA------------SLGKSWITARARETVALGRELLGGNGIL 389
L+E T G A SL K + + TV G ++ GG G
Sbjct: 330 GLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFX 389
Query: 390 SDFLVAKAFCDIEPIYTYEGTYDINTLV 417
+++ + + + D +EGT +IN L+
Sbjct: 390 AEYEIERXYRDSRINRIFEGTNEINRLI 417
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 180/389 (46%), Gaps = 24/389 (6%)
Query: 49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHV--IPKLGALRVAGGTI- 105
Y +D S ++ R R +E+E+ P++ E E E +V + K G L + +
Sbjct: 23 YTPEDFDESVKEIART-TRTFVEREVLPLL-ERMEHGELELNVPLMRKAGELGLLAIDVP 80
Query: 106 KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
+ YG + + E++ T+ H+S+ L + G+EEQK+KYLP LA
Sbjct: 81 EEYGGLDLPKVISTVVAEELSGSGGFSVTYG-AHTSIGTLPLVYFGTEEQKRKYLPKLAS 139
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTT 223
IA + LTEP GSDA A T AT E G +IL G K+WI N+ FA + +FA+
Sbjct: 140 GEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAK-VD 198
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTS-K 282
+LV++D PGL+ E K+G++ ++L+ V VP E+ L + +
Sbjct: 199 GEHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFN 258
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
VL V R + +G + ++ +Y +R QFG P+ F + QQKL +M I A
Sbjct: 259 VLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAES 318
Query: 343 VGWRLCKLYEK---GAMTPGHASLGKSWITARARETVALGRELL-----------GGNGI 388
+R L ++ G P G A LG E+L GG G
Sbjct: 319 AVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGY 378
Query: 389 LSDFLVAKAFCDIEPIYTYEGTYDINTLV 417
++ + +A+ D +EGT +IN L+
Sbjct: 379 SQEYPIERAYRDARINRIFEGTNEINRLL 407
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 174/376 (46%), Gaps = 11/376 (2%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTIK-GYGCP 111
L+ E++ +R + + +++ +AP E EF +LG L V G T YG
Sbjct: 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 112 GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171
G + + EI+R + HS+L + + G+E QK+KYLP L I
Sbjct: 73 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 172 WALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT-----TTNQ 226
A++EP GSD ++ A K +IL G K WI N ADVL+++A+ +
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVLA 285
I ++V+K PG + +K +K+G+R +++ + +P + L N L
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLD 252
Query: 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGW 345
+ R+++A P+G+ V D YL R+ FG + FQ+ Q K+ M + A +
Sbjct: 253 LERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVY 312
Query: 346 RLCKLYEKGAMTPGHASLGKSWITARARETVAL-GRELLGGNGILSDFLVAKAFCDIEPI 404
+ K ++G T + G +A VAL G + GGNG ++DF + + D +
Sbjct: 313 NVAKACDEGHCTAKDCA-GVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLY 371
Query: 405 YTYEGTYDINTLVTGR 420
GT ++ LV GR
Sbjct: 372 EIGAGTSEVRRLVIGR 387
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 186/386 (48%), Gaps = 21/386 (5%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH-VIPKLGALRVAGGTI-KGYGCPG 112
L+ E Q ++ +VR + K+I P ++ + FP+ + +G L G I + YG G
Sbjct: 5 LSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEG 64
Query: 113 --HSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
A I EIAR ++ + + TI GSE K+KY+P L+ +
Sbjct: 65 MDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA---RNTTTNQI 227
+ +TEP GSD A+++TA W+L G K WI N+ ADVL+ +A + + +
Sbjct: 125 GFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGL 184
Query: 228 NGYLVK-KDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--PGVNSFQDTSKV- 283
+ ++++ ++ PG+ + +E K+G G++ L V VP E+ L PG D +++
Sbjct: 185 SAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPG-----DGARIV 238
Query: 284 ---LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAM 340
L +R+ A +G++ D +Y ER+QFG P+ FQ+NQ + QM ++A
Sbjct: 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAA 298
Query: 341 ILVGWRLCKLYEKGAMTPG-HASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFC 399
L+ ++ ++G + G ++ K + +LG G +++ VA+ +
Sbjct: 299 RLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYR 358
Query: 400 DIEPIYTYEGTYDINTLVTGREVTGI 425
D Y EG+ +I ++ + G+
Sbjct: 359 DAPTYYMVEGSANICKMIIALDQLGV 384
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 176/375 (46%), Gaps = 11/375 (2%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK----GYGC 110
LT +Q + EK++AP + E K + +I +L +L + G + G G
Sbjct: 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGD 64
Query: 111 PGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIA 170
G V +A+ E+A+ DA + + SL I G+E QK+K+L L + +
Sbjct: 65 DGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLG 124
Query: 171 CWALTEPAYGSDASALNTTATKVEGG-WILEGQKRWIGNSTFADVLVIFA---RNTTTNQ 226
+ LTEP G+DAS T ATK + G + L G K +I N AD+ ++FA ++ +
Sbjct: 125 AFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHG 184
Query: 227 INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLA 285
I ++++ PG T K E+K+G+ Q +++ + V VP E+ L F+ L
Sbjct: 185 ITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLD 244
Query: 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMI-LVG 344
R+ VA Q +GI+ Y K+R QFG PL FQ KL M I+A LV
Sbjct: 245 GGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVY 304
Query: 345 WRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPI 404
CK E T A++ K + A ++ GG G ++ VA+ D +
Sbjct: 305 KAACKKQEGKPFTV-DAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKIT 363
Query: 405 YTYEGTYDINTLVTG 419
YEGT ++ +VTG
Sbjct: 364 QIYEGTNEVQLMVTG 378
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 9/379 (2%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F T +++ + R+ +EI P+ AEY + E+P +I + L + I + G
Sbjct: 37 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 96
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G A + E+A T I +SL + I + G+++QK+KYL + + +
Sbjct: 97 GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 155
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 156 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 215
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSK 282
G++V+ D PG+ + + E +G R I+ + V VP E+ L G + F+
Sbjct: 216 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG 275
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
+R +VA +G++ D +Y ERK FG L Q L +M ++ +
Sbjct: 276 AFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARM 335
Query: 343 VGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402
R + G +AS+ K++ A + ++LGGNG +++ V K D +
Sbjct: 336 SYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAK 395
Query: 403 PIYTYEGTYDINTLVTGRE 421
YEGT I L+ RE
Sbjct: 396 IYQIYEGTSQIQRLIVARE 414
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 179/402 (44%), Gaps = 19/402 (4%)
Query: 31 AFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH 90
A PQ P S F F+ LT +++ + R+ +EI P+ AEY E+P
Sbjct: 2 AVPQCEPGSGF--------SFE--LTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVP 51
Query: 91 VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL 149
++ + L + I + +G G + + + E+A T I ++ L + + +
Sbjct: 52 LLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLII 110
Query: 150 CGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209
G+ +Q++KYL + + + + +TEP GSD + + T A K +I+ GQK WI N
Sbjct: 111 GGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 170
Query: 210 TFADVLVIFARNT------TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKV 263
A+ + AR+ + G++V+ D PG+ + + E +G R I+ + V
Sbjct: 171 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDV 230
Query: 264 FVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAA 322
VP E+ L G + F+ +R VA +G++ D +Y ERK FG LA
Sbjct: 231 RVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAE 290
Query: 323 FQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGREL 382
Q L M ++ L R + G +AS+ K++ A + ++
Sbjct: 291 HQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQV 350
Query: 383 LGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424
GGNG +++ V K D + YEGT I ++ RE G
Sbjct: 351 FGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIG 392
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 9/379 (2%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F T +++ + R+ +EI P+ AEY + E+P +I + L + I + G
Sbjct: 12 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G A + E+A T I +SL + I + G+++QK+KYL + + +
Sbjct: 72 GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSK 282
G++V+ D PG+ + + E +G R I+ + V VP E+ L G + F+
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG 250
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
+R +VA +G++ D +Y ERK FG L Q L +M ++ +
Sbjct: 251 AFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARM 310
Query: 343 VGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402
R + G +AS+ K++ A + ++LGGNG +++ V K D +
Sbjct: 311 SYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAK 370
Query: 403 PIYTYEGTYDINTLVTGRE 421
YEGT I L+ RE
Sbjct: 371 IYQIYEGTSQIQRLIVARE 389
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 172/382 (45%), Gaps = 9/382 (2%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F LT +++ + R+ +EI P+ AEY E+P ++ + L + I + +G
Sbjct: 2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 61
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G + + + E+A T I ++ L + + + G+ +Q++KYL + + +
Sbjct: 62 GLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLM 120
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 180
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSK 282
+ G++V+ D PG+ + + E +G R I+ + V VP E+ L G + F+
Sbjct: 181 SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMG 240
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
+R VA +G++ D +Y ERK FG LA Q L M ++ L
Sbjct: 241 TFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELARL 300
Query: 343 VGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402
R + G +AS+ K++ A + ++ GGNG +++ V K D +
Sbjct: 301 SYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAK 360
Query: 403 PIYTYEGTYDINTLVTGREVTG 424
YEGT I ++ RE G
Sbjct: 361 IYQIYEGTAQIQRIIIAREHIG 382
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 169/379 (44%), Gaps = 9/379 (2%)
Query: 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYG 109
F T +++ + R+ +EI P+ AEY + E+P +I + L + I + G
Sbjct: 12 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
Query: 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169
G A + E+A T I +SL + I + G+++QK+KYL + + +
Sbjct: 72 GLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT------T 223
+ +TEP GSD + + T A K +I+ GQK WI N A+ + AR+
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSK 282
G++V+ D PG+ + + E +G R I+ + V VP E+ L G + F+
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG 250
Query: 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMIL 342
R +VA +G++ D +Y ERK FG L Q L +M ++ +
Sbjct: 251 AFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARM 310
Query: 343 VGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402
R + G +AS+ K++ A + ++LGGNG +++ V K D +
Sbjct: 311 SYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAK 370
Query: 403 PIYTYEGTYDINTLVTGRE 421
Y GT I L+ RE
Sbjct: 371 IYQIYGGTSQIQRLIVARE 389
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 170/382 (44%), Gaps = 22/382 (5%)
Query: 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP--- 111
L E R R+ +EKE P ++ ++ P K+G G+ CP
Sbjct: 10 LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGE--------NGFLCPWVD 61
Query: 112 ----GHSVTGA-AIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL 166
G + A ++ I E S I +H+ + IA G+EEQKQK+LP
Sbjct: 62 EKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTG 121
Query: 167 NTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQ 226
I A+TEP GSD + ++TTA K +I+ GQK +I N AD++V+ + +
Sbjct: 122 ELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAK 181
Query: 227 -----INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRL-PGVNSFQDT 280
I+ +V++D PG T + K+GL ++ + VP + L F
Sbjct: 182 PPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYL 241
Query: 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAM 340
+ L R++VA + ++ + +Y+K+R FG ++ FQ Q +L +M I
Sbjct: 242 MEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALG 301
Query: 341 ILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCD 400
R+ + + G S+ K WIT A+ A +L GG G + ++ +A+ + D
Sbjct: 302 RTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRD 361
Query: 401 IEPIYTYEGTYDINTLVTGREV 422
I Y GT ++ + R++
Sbjct: 362 IPVSAIYAGTNEMMKTIIARQL 383
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 179/396 (45%), Gaps = 20/396 (5%)
Query: 37 PASKFPPCASDYYQFDDLLTSEEQAVRMKV-RECMEKEIAPIMAEYWEKAEFPFHVIPKL 95
P S P A D LL S+E A +++ RE +K + PI+ + + +P V +L
Sbjct: 2 PGSMIHPMA-----VDRLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQL 56
Query: 96 GALRVAG-GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEE 154
GA + + +G G + EIA AS + + VHS L+ + + G+EE
Sbjct: 57 GAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEE 115
Query: 155 QKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADV 214
QK+++LP + I ++L+EP GSDA+AL AT +GG+++ G K WI + AD
Sbjct: 116 QKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADF 175
Query: 215 LVIFARNTTTNQ-INGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273
+FAR ++ ++ +LV D PGL+ K E K+GL V + D DR G
Sbjct: 176 YTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARI-DADRRIG 234
Query: 274 V--NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLV 331
Q L R+ +A G++ D Y ER FG + I+ Q L
Sbjct: 235 EEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKI----IDHQGLG 290
Query: 332 QMLGNIQAMILVGWRL----CKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNG 387
+L ++ A + + ++G AS+ K T A + ++ GG G
Sbjct: 291 FLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVG 350
Query: 388 ILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 423
D+ V + + + + +EGT I LV R +T
Sbjct: 351 YTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT 386
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 168/372 (45%), Gaps = 7/372 (1%)
Query: 57 SEEQAVRMKVR-ECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIK-GYGCPGHS 114
+EEQ KV + +E+AP MAE+ +K FP V+ K L G I+ G G S
Sbjct: 20 NEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLS 79
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
++ +A S + +I +H+ A + + G+EEQ+ K+ P L + A + L
Sbjct: 80 RLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSF-GNEEQRHKFCPPLCTMEKFASYCL 138
Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTNQINGYLV 232
TEP GSDA++L T+A K +IL G K +I + +D+ V+ R I+ +V
Sbjct: 139 TEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGPKGISCIVV 198
Query: 233 KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMV 291
+K PGL+ K E K+G ++ + VP +R+ F + L R+ +
Sbjct: 199 EKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINI 258
Query: 292 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGN-IQAMILVGWRLCKL 350
A +G + + +L RKQFG PLA+ Q Q L M + A ++V L
Sbjct: 259 ASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVAL 318
Query: 351 YEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGT 410
E+ S+ K + T ++ GG G L D+ V + D EG+
Sbjct: 319 QEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGS 378
Query: 411 YDINTLVTGREV 422
++ ++ R +
Sbjct: 379 NEVMRILISRSL 390
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 20/309 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
H S+ I L G++ QK+KYLP LA T+A + LTEP+ GSDA+++ T+A G
Sbjct: 113 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 172
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
+ L G K WI N AD+ +FA+ T+ +I ++V++ G+T E K+
Sbjct: 173 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 232
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCH 307
G++ ++ V VP E+ L V S F+ +L R +A G G+
Sbjct: 233 GIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAV 292
Query: 308 RYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-PGHASLGKS 366
+ R QFG + F + Q+KL +M+ + + + ++GA A++ K
Sbjct: 293 DHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKI 352
Query: 367 WITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVT-------- 418
+ + A + +++GG G + + V + D+ +EGT DI L
Sbjct: 353 FGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 412
Query: 419 GREVTGIAS 427
G+E++G+ S
Sbjct: 413 GKELSGLGS 421
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 20/309 (6%)
Query: 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGG-- 196
H S+ I L G++ QK+KYLP LA T+A + LTEP+ GSDA+++ T+A G
Sbjct: 133 HQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKY 192
Query: 197 WILEGQKRWIGNSTFADVLVIFARNTTTN--------QINGYLVKKDAPGLTVTKIENKI 248
+ L G K WI N AD+ +FA+ T+ +I ++V++ G+T E K+
Sbjct: 193 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 252
Query: 249 GLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCH 307
G++ ++ V VP E+ L V S F+ +L R +A G G+
Sbjct: 253 GIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAV 312
Query: 308 RYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-PGHASLGKS 366
+ R QFG + F + Q+KL +M+ + + + ++GA A++ K
Sbjct: 313 DHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKI 372
Query: 367 WITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVT-------- 418
+ + A + +++GG G + + V + D+ +EGT DI L
Sbjct: 373 FGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDK 432
Query: 419 GREVTGIAS 427
G+E++G+ S
Sbjct: 433 GKELSGLGS 441
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/378 (23%), Positives = 162/378 (42%), Gaps = 17/378 (4%)
Query: 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCP---- 111
T E +A+ R +E+EIAP +AE+ E P + L A V + G G P
Sbjct: 30 TPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDL--HLNAAEVG---LLGIGFPEEVG 84
Query: 112 ---GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYL-PSLAQLN 167
G+++ A + A +A ++ L +A+ IA GS+ ++Y+ P+LA
Sbjct: 85 GSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAG-K 143
Query: 168 TIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT--N 225
I +TEP GSD + L T A + +++ G K +I + AD + R
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYG 203
Query: 226 QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVL 284
++ ++ K++PG V++ +K+G R ++ V VP ++ + NS F +
Sbjct: 204 GVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF 263
Query: 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVG 344
R+ +A Q + D+ + +ER+ FG PL QI + KL +M +
Sbjct: 264 QAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYT 323
Query: 345 WRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPI 404
+ + + G S+ K+ V ++ GG G + + + + + D +
Sbjct: 324 RAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRIL 383
Query: 405 YTYEGTYDINTLVTGREV 422
GT +I V + +
Sbjct: 384 GIGGGTNEIMNEVIAKRI 401
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 116/291 (39%), Gaps = 13/291 (4%)
Query: 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTIKGYGCPGHS 114
T+E +A+R VR E+E+ P A WE+A E P + K L + G
Sbjct: 27 TAEREALRKTVRAFAEREVLP-HAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGG 85
Query: 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIAL-----CGSEEQKQKYLPSLAQLNTI 169
+ I E S V++SL IA+ G + Y+ + I
Sbjct: 86 DGADPVVICEEMHYAGSPGG---VYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKI 142
Query: 170 ACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--TTNQI 227
A+TEP GSD L T A +++ G K +I + AD +V AR +
Sbjct: 143 GALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAGGV 202
Query: 228 NGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNS-FQDTSKVLAV 286
+ +V K PG VT+ +K+G R ++ V VP + + N+ F +
Sbjct: 203 SLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVA 262
Query: 287 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNI 337
RV +A Q + D+ + + R FG PL + Q Q L M I
Sbjct: 263 ERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRI 313
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 21/273 (7%)
Query: 64 MKVRECMEKEIAPIMAEYWE-KAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAI 122
M R+ + ++ A W+ E P ++ +LGA G C + + +
Sbjct: 1 MPERDALLTDLVGDRAAEWDTSGELPRDLLVRLGA--------DGLLCAEVAAEHGGLGL 52
Query: 123 AE------IARVDASCSTF--ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWAL 174
A V + CS+ ++ +A T+ G Q+ +L L +A
Sbjct: 53 GSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTS-GKLAAVGF 111
Query: 175 TEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKK 234
+E GSD SA+ T +++G K W + +AD LV+F + +V
Sbjct: 112 SERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSGAV-VVVPA 170
Query: 235 DAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQD--TSKVLAVSRVMVA 292
D PG+ V ++ G R + D+ L +V VP L G + + LA R VA
Sbjct: 171 DTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVA 230
Query: 293 WQPIGISMGVYDMCHRYLKERKQFGAPLAAFQI 325
W +GI + + R+QFG PL Q+
Sbjct: 231 WGCVGILRACRTAAVAHARTREQFGRPLGDHQL 263
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 148/364 (40%), Gaps = 74/364 (20%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
F +H + + I G+++Q++K+LP ++ I C+A TE +GS+ L TTAT
Sbjct: 117 FTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDP 176
Query: 192 ----KVEGGWILEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVK------- 233
V L K W G ST A V++AR T + +NG++V+
Sbjct: 177 QTDEFVIHSPTLTSSKWWPGGLGKVSTHA---VVYARLITDGKDYGVNGFIVQLRSLEDH 233
Query: 234 KDAPGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK-------- 282
K PG+TV I K G + NG + V +P + L V+ K
Sbjct: 234 KPLPGVTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPR 293
Query: 283 ------VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAAFQINQQK 329
++ V + +VA + +S V + RY R+QFG+ + ++ Q +
Sbjct: 294 QLLYGTMVYVRQSIVADASLAMSRAVC-IATRYSAVRRQFGSQNGGQETQVIDYKTQQNR 352
Query: 330 LVQMLGNIQAMILVGWRLCKLY----------EKGAMTPGHASLG--KSWITARARETVA 377
L +L + A VG L LY + + HA KS T+ + +
Sbjct: 353 LFPLLASAYAFRFVGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIE 412
Query: 378 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEG-------------TYDINTLVTGREVTG 424
R+L GG+G L + + F P TYEG I+ L TG++ G
Sbjct: 413 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTISQLGTGKKPVG 472
Query: 425 IASF 428
S+
Sbjct: 473 TVSY 476
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 20/286 (6%)
Query: 151 GSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGW-ILEGQKRWIGN 208
GS+EQK+ +L L + + + + +TEP SDA+ + TA VEG ++ G+K W
Sbjct: 125 GSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAV-VEGDEVVINGRKWWSTG 183
Query: 209 STFADVLVIFARNTTTNQINGY------LVKKDAPGLTVTKIENKIGLRIVQNGD--ILL 260
D VI T + Y LV D PG+TV ++ +G G +
Sbjct: 184 VGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSF 243
Query: 261 KKVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGIS-MGVYDMCHRYLKERKQFGA 318
V +P + + G F+ L RV A + IG++ + + C R L +R FG
Sbjct: 244 DNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGL-DRTAFGK 302
Query: 319 PLAAFQINQQKLVQMLGNI-QAMILV---GWRLCKLYEKGAMTPGHASLGKSWITARARE 374
PL N++++ I Q +LV W L + GA++ S K A++
Sbjct: 303 PLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSA--VSEIKVAAPNMAQQ 360
Query: 375 TVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420
+ + ++ GG G+ +DF +A A+ + + +G +++ V R
Sbjct: 361 VIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVAR 406
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 139/332 (41%), Gaps = 61/332 (18%)
Query: 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT--- 191
++ +H + + I G+EEQ++K+L ++ I C+A TE +GS+ L TTAT
Sbjct: 98 YVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDP 157
Query: 192 KVEGGWI----LEGQKRWIGN----STFADVLVIFARNTTTNQ---INGYLVKKDA---- 236
K + I K W G ST A V++AR T + I+G++V+ +
Sbjct: 158 KTDEFVIHTPTQTASKWWPGGLGKVSTHA---VVYARLITNGKDYGIHGFIVQLRSLEDH 214
Query: 237 ---PGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGVNSF--------QDTSK 282
P +TV I K+G + NG ++ V +P + L ++ D K
Sbjct: 215 SPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPK 274
Query: 283 VLA------VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAAFQINQQK 329
L V + +VA +S V + RY R+QFGA + ++ Q +
Sbjct: 275 QLVYGTMVYVRQTIVADASNALSRAVC-IATRYSAVRRQFGAHNGGIETQVIDYKTQQNR 333
Query: 330 LVQMLGNIQAMILVG----WRLCKLYEKGA------MTPGHASLG--KSWITARARETVA 377
L +L + A VG W + E+ A + HA KS T + +
Sbjct: 334 LFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIE 393
Query: 378 LGRELLGGNGILSDFLVAKAFCDIEPIYTYEG 409
R+L GG+G L + + F P TYEG
Sbjct: 394 ECRKLCGGHGYLWCSGLPELFAVYVPACTYEG 425
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 16/196 (8%)
Query: 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP-AYGSDASALNTTATKVEGGWILEGQ 202
M + L GSEEQK+++L L Q N +C+ +TEP SDA+ + + + E +++ G+
Sbjct: 124 MEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGK 183
Query: 203 KRW---IGNSTFADVLVIFARNTTTN-----QINGYLVKKDAPGLTVTKIENKIGLRIVQ 254
K W GN + ++ R T+ Q + LV + PG+ + + + G
Sbjct: 184 KWWSSGAGNPK-CKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNF 242
Query: 255 NG---DILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGIS-MGVYDMCHRY 309
+G +I +V VP + + G F+ + L R+ + +G++ + MC R
Sbjct: 243 HGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCER- 301
Query: 310 LKERKQFGAPLAAFQI 325
+R F L A ++
Sbjct: 302 ATQRIAFKKKLYAHEV 317
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 19/226 (8%)
Query: 108 YGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167
YG G A + EIA D S H + A + I L GS+EQ++ +AQ N
Sbjct: 86 YGGWGADWPTAIEVVREIAAADGSLGHLFGYHLTNAPM-IELIGSQEQEEHLYTQIAQNN 144
Query: 168 TIACWALTEPAYGSDASALN--TTATKVE-GGWILEGQKRWIGNSTFADVLVIFARNTTT 224
W + +++ L+ +AT E GG++L G K + + +D+L +F
Sbjct: 145 ----WWTGNASSENNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDD 200
Query: 225 NQINGYLVKKDAP----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSF--- 277
+ G ++ P G+T IG+R +G V V ++ L N+F
Sbjct: 201 SPQQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPNAFVLA 260
Query: 278 ----QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP 319
+ S +++++ A +GI+ G D Y + + + P
Sbjct: 261 FIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTP 306
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 184 SALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTN---QINGYLVKKDAPGLT 240
+A+ T GGW+L G+K + + VI AR T+ ++ +V +D PG T
Sbjct: 150 TAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFT 209
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLA---VSRVMVAWQPIG 297
V + +G+R DI+ +P + L VLA VS V V +G
Sbjct: 210 VLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVG 269
Query: 298 ISMGVYDMCHRYLKERKQ 315
++ YD L+ R +
Sbjct: 270 VAQAAYDTAVAALERRPE 287
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/357 (21%), Positives = 128/357 (35%), Gaps = 73/357 (20%)
Query: 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTIKGY 108
D L++ ++ R + P Y + + F A V+ G +KG
Sbjct: 4 DFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQ 63
Query: 109 GCPGHSVTG-----AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL 163
P H TG +AI + E V+ S + I + L + I L + + P L
Sbjct: 64 ISPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPINLAAGPQHAEFLAPFL 122
Query: 164 A-QLNTIACWALTEPAYGSDASALNT------TATKVEGG-WILEGQKRWIGNST----- 210
+ + + +A +EP G A+AL T ++EG W++ G+K W N
Sbjct: 123 SGEGSPLASLVFSEP--GGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFK 180
Query: 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDI---------LLK 261
D+ + R+ TT G ENK+ + +V D+ +L+
Sbjct: 181 GCDLACVVCRDATTPLEEG------------QDPENKVMIILVTRADLDRNGEGSFEVLR 228
Query: 262 KVFVPDEDRLPG-----VNSFQDTSKVLAV--------------SRVMVAWQPIGISMGV 302
V P + G N T VL S V+V +G+
Sbjct: 229 HVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAA 288
Query: 303 YDMCHRYLKERKQFGA-PLAAFQINQQKLVQMLGNI----QAMILVGWRLCKLYEKG 354
+D ++ KE + GA PL + +Q +L + +A + W+ E G
Sbjct: 289 FDAALKFAKEDNRGGAVPL----LERQAFADLLSGVKIQTEAARALTWKAAHAMENG 341
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 117/332 (35%), Gaps = 49/332 (14%)
Query: 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK----- 192
+H + + T+ + EQ++++ L +A TE +G+ L TTAT
Sbjct: 102 LHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQ 161
Query: 193 --VEGGWILEGQKRWIG----NSTFADVLVIFARNTTTNQINGYLV-------KKDAPGL 239
+ + K W G S A VL ++ ++V K PG+
Sbjct: 162 EFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGI 221
Query: 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRL--------------PGVNSFQDTSKVLA 285
TV I K G + NG + + +P E+ L P N + V
Sbjct: 222 TVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFV 281
Query: 286 VSRVM-VAWQPIGISMGV---YDMCHRYLKERKQFGAP-LAAFQINQQKLVQMLGNIQAM 340
S ++ A Q + + + Y R + ++ P + FQ Q KL +L A
Sbjct: 282 RSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAF 341
Query: 341 ILVGWRLCKLYEKGAMTPGHASLG------------KSWITARARETVALGRELLGGNGI 388
VG + + Y + + G L K++ T A + R GG+G
Sbjct: 342 HFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGY 401
Query: 389 LSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420
+ + P T+EG + L T R
Sbjct: 402 SHSSGIPNIYVTFTPACTFEGENTVMMLQTAR 433
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 67 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 118
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 119 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 102 GGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLP 161
GGT++ S+ +I + E+ V+ + S I V ++L ++ + LC S ++K+L
Sbjct: 66 GGTME-------SLVHESIILEELFAVEPATSITI-VATALGLMPVILCDSPSLQEKFLK 117
Query: 162 SL--AQLNTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+ +A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 118 PFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 172
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 109 GCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL--AQL 166
G S+ +I + E+ V+ + S I V ++L + + LC S ++K+L +
Sbjct: 67 GGTXESLVHESIILEELFAVEPATSITI-VATALGLXPVILCDSPSLQEKFLKPFISGEG 125
Query: 167 NTIACWALTEPAYGSD-----ASALNTTATKVEGGWILEGQKRWIGNS 209
+A +EP ++ L TTA KV W++ G+K W NS
Sbjct: 126 EPLASLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNS 173
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTT-ATKVEGGWILEGQKRWIGNSTFADVL 215
++ L ++A+ C AL DA + T + GGW+L G+K + + A
Sbjct: 117 ERLLRAMAEGEAAVCGAL------KDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHF 170
Query: 216 VIFARNTTTNQ---INGYLVKKDAPGLTVTKIENKIGLR 251
+ A+ + + +V +DAPGLTV + +G+R
Sbjct: 171 FVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMR 209
>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|6 Chain 6, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 181
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYG 109
S QA M V + K++AP+M WE+ P VI +GA +GG Y
Sbjct: 71 SPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVI-SMGACASSGGMFNNYA 122
>pdb|1VMI|A Chain A, Crystal Structure Of Putative Phosphate Acetyltransferase
(Np_416953.1) From Escherichia Coli K12 At 2.32 A
Resolution
Length = 355
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 83 EKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVT-GAAI-AIAEIARVDA-SCSTFILVH 139
E + + +LG R G I+G P H ++ G ++ I E+A V A T +
Sbjct: 283 EAGNIGYKIAQRLGGYRAVGPLIQGLAAPXHDLSRGCSVQEIIELALVAAVPRQTEVNRE 342
Query: 140 SSLAMLTIALCG 151
SSL L LCG
Sbjct: 343 SSLQTLVEGLCG 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,654,554
Number of Sequences: 62578
Number of extensions: 500282
Number of successful extensions: 1128
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 57
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)