Query 013626
Match_columns 439
No_of_seqs 306 out of 1541
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 1.2E-81 2.5E-86 574.2 23.6 360 52-412 34-398 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 4.8E-80 1E-84 554.2 28.4 373 52-425 25-405 (408)
3 KOG0138 Glutaryl-CoA dehydroge 100.0 6.4E-78 1.4E-82 539.1 30.3 408 23-430 23-432 (432)
4 KOG0141 Isovaleryl-CoA dehydro 100.0 3E-78 6.6E-83 542.9 27.9 370 54-423 40-418 (421)
5 PLN02526 acyl-coenzyme A oxida 100.0 1.5E-72 3.3E-77 565.6 46.1 409 30-439 4-412 (412)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 6.8E-70 1.5E-74 543.2 45.0 374 51-425 9-383 (386)
7 cd01157 MCAD Medium chain acyl 100.0 2.1E-66 4.5E-71 517.1 42.0 369 55-424 1-377 (378)
8 PRK03354 crotonobetainyl-CoA d 100.0 3.2E-66 6.9E-71 515.5 42.4 371 51-424 1-377 (380)
9 PLN02519 isovaleryl-CoA dehydr 100.0 5.4E-66 1.2E-70 517.5 43.5 373 52-424 23-402 (404)
10 PRK12341 putative acyl-CoA deh 100.0 5.2E-66 1.1E-70 514.3 42.7 370 51-424 1-378 (381)
11 cd01162 IBD Isobutyryl-CoA deh 100.0 9E-66 1.9E-70 511.7 42.7 369 55-424 1-374 (375)
12 TIGR03203 pimD_small pimeloyl- 100.0 3E-66 6.6E-71 514.0 38.9 364 53-421 2-375 (378)
13 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 6.5E-66 1.4E-70 512.2 41.1 364 55-421 1-370 (372)
14 cd01156 IVD Isovaleryl-CoA deh 100.0 1.4E-65 3E-70 510.9 43.1 370 55-424 2-376 (376)
15 PLN02636 acyl-coenzyme A oxida 100.0 3E-66 6.4E-71 541.3 40.0 416 2-424 9-485 (686)
16 PTZ00461 isovaleryl-CoA dehydr 100.0 1.3E-65 2.9E-70 515.6 41.8 370 53-424 35-407 (410)
17 cd01160 LCAD Long chain acyl-C 100.0 1.7E-65 3.8E-70 509.5 41.8 365 57-422 1-371 (372)
18 cd01161 VLCAD Very long chain 100.0 3.8E-65 8.2E-70 512.4 41.2 375 48-425 20-407 (409)
19 PRK09463 fadE acyl-CoA dehydro 100.0 1.5E-63 3.2E-68 521.6 41.9 362 54-418 78-466 (777)
20 cd01158 SCAD_SBCAD Short chain 100.0 5E-63 1.1E-67 492.1 41.2 367 58-424 2-373 (373)
21 PLN02312 acyl-CoA oxidase 100.0 1.5E-63 3.2E-68 519.8 38.3 421 1-424 1-487 (680)
22 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 9E-63 2E-67 493.0 39.4 365 59-423 3-393 (394)
23 TIGR03204 pimC_large pimeloyl- 100.0 7.3E-62 1.6E-66 485.6 42.1 367 53-425 2-395 (395)
24 PRK13026 acyl-CoA dehydrogenas 100.0 6.8E-62 1.5E-66 507.2 40.9 358 55-418 78-465 (774)
25 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.6E-61 3.5E-66 484.4 39.5 376 53-428 3-392 (393)
26 cd01153 ACAD_fadE5 Putative ac 100.0 9.8E-60 2.1E-64 472.6 39.3 355 63-422 2-406 (407)
27 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.5E-59 3.3E-64 467.6 35.6 360 57-424 1-380 (380)
28 PLN02876 acyl-CoA dehydrogenas 100.0 4.8E-59 1E-63 503.0 40.6 373 53-425 400-819 (822)
29 PTZ00456 acyl-CoA dehydrogenas 100.0 1E-58 2.3E-63 480.4 40.8 367 57-427 58-483 (622)
30 KOG0137 Very-long-chain acyl-C 100.0 5.9E-59 1.3E-63 451.6 25.6 376 46-421 67-457 (634)
31 cd01163 DszC Dibenzothiophene 100.0 1.5E-57 3.3E-62 453.1 32.9 353 65-424 2-373 (377)
32 cd01154 AidB Proteins involved 100.0 1.9E-55 4.1E-60 442.1 38.2 347 67-423 38-417 (418)
33 cd01159 NcnH Naphthocyclinone 100.0 1.3E-53 2.8E-58 423.7 28.0 342 66-424 3-370 (370)
34 PRK11561 isovaleryl CoA dehydr 100.0 2.8E-52 6.1E-57 423.3 36.2 326 90-426 90-443 (538)
35 PTZ00460 acyl-CoA dehydrogenas 100.0 5.8E-53 1.3E-57 438.7 31.3 297 129-425 88-432 (646)
36 cd01150 AXO Peroxisomal acyl-C 100.0 7.4E-53 1.6E-57 438.5 31.3 312 114-425 80-445 (610)
37 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.4E-51 3E-56 402.7 37.1 320 58-420 2-327 (327)
38 PLN02443 acyl-coenzyme A oxida 100.0 1.2E-49 2.6E-54 414.5 34.9 289 136-424 99-440 (664)
39 PTZ00457 acyl-CoA dehydrogenas 100.0 1.8E-47 3.8E-52 385.7 35.2 287 94-415 58-362 (520)
40 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 1E-46 2.2E-51 363.0 20.6 378 45-425 29-465 (661)
41 KOG1469 Predicted acyl-CoA deh 100.0 1.3E-43 2.7E-48 313.9 15.8 328 94-423 35-381 (392)
42 KOG0136 Acyl-CoA oxidase [Lipi 100.0 1E-30 2.2E-35 258.3 16.7 293 132-424 107-448 (670)
43 TIGR02309 HpaB-1 4-hydroxyphen 100.0 5.5E-26 1.2E-30 229.1 27.4 235 148-390 119-391 (477)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.7E-23 3.6E-28 180.8 17.5 149 275-423 2-150 (150)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 1.2E-18 2.6E-23 142.9 9.1 112 56-167 1-113 (113)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 9.5E-16 2.1E-20 129.7 12.6 123 289-411 1-133 (134)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 6.5E-16 1.4E-20 107.3 7.0 52 171-222 1-52 (52)
48 COG2368 Aromatic ring hydroxyl 99.4 1.4E-10 3.1E-15 113.2 21.8 238 150-392 125-401 (493)
49 TIGR02310 HpaB-2 4-hydroxyphen 99.3 1.7E-10 3.8E-15 116.5 20.4 220 154-385 136-398 (519)
50 PF11794 HpaB_N: 4-hydroxyphen 98.5 4.3E-07 9.3E-12 84.4 9.8 117 155-271 124-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 95.1 1.5 3.2E-05 39.6 15.7 71 320-390 44-119 (205)
52 PTZ00457 acyl-CoA dehydrogenas 92.6 1.5 3.2E-05 45.5 11.9 74 316-390 429-503 (520)
53 PF14749 Acyl-CoA_ox_N: Acyl-c 91.6 0.17 3.8E-06 41.7 3.1 34 136-169 92-125 (125)
54 KOG0137 Very-long-chain acyl-C 89.4 4.4 9.5E-05 41.7 11.2 70 316-385 533-603 (634)
55 PRK09463 fadE acyl-CoA dehydro 52.2 1.9E+02 0.0042 31.8 12.1 101 316-423 559-661 (777)
56 PF13051 DUF3912: Protein of u 37.5 55 0.0012 22.5 3.3 36 197-232 2-37 (68)
57 PF01726 LexA_DNA_bind: LexA D 33.9 1.4E+02 0.003 21.4 5.3 50 54-103 3-58 (65)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-81 Score=574.25 Aligned_cols=360 Identities=33% Similarity=0.493 Sum_probs=348.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCC
Q 013626 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (439)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (439)
-..|++.+..+++.+++|+++.+.|.+.++|++..+|..+++.+.++|++++.+ ++|||.|+++..+..++|||++.|+
T Consensus 34 l~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~ 113 (398)
T KOG0139|consen 34 LQILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDA 113 (398)
T ss_pred hhhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCc
Confidence 346899999999999999999999999999999999999999999999999988 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCC
Q 013626 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (439)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~ 210 (439)
|++.++.+|+.+...+|..||+++||++|+|.+ .|+.+++||+|||+.|||+..+.|+|+++||.|+|||.|.||||+.
T Consensus 114 sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~ 192 (398)
T KOG0139|consen 114 SVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAG 192 (398)
T ss_pred cceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCc
Confidence 999999999999999999999999999888875 7888999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHH
Q 013626 211 FADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (439)
Q Consensus 211 ~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~ 286 (439)
.|+|++|+|.++.. .++++|+||++.||+++.+..+|+|||++.++.++||||+||.+++||+. .|+++....++.
T Consensus 193 ~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~ 272 (398)
T KOG0139|consen 193 EADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNA 272 (398)
T ss_pred ccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCc
Confidence 99999999998653 68999999999999999999999999999999999999999999999997 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHH
Q 013626 287 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKS 366 (439)
Q Consensus 287 ~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~ 366 (439)
+|++++++++|++++|+|.++.|+++|.|||++|.++|.+||+||+|.++++++|+++|+++++-+.|.+.-.+++|||+
T Consensus 273 gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl 352 (398)
T KOG0139|consen 273 GRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKL 352 (398)
T ss_pred cceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHH
Q 013626 367 WITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYD 412 (439)
Q Consensus 367 ~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~ 412 (439)
++++.+..+++.|+|+.||.||++++|++|||||++...+|||+++
T Consensus 353 ~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 353 YASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred hhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 9999999999999999999999999999999999999999999863
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-80 Score=554.24 Aligned_cols=373 Identities=30% Similarity=0.425 Sum_probs=361.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCC
Q 013626 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (439)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (439)
++.|+++|.++++.+++|.++++.|.+.++|+.++||.+++++..++||....+ +.|||+|++..+.+.+.|+|+.+|.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCt 104 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCT 104 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccch
Confidence 578999999999999999999999999999999999999999999999999977 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCC
Q 013626 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (439)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~ 210 (439)
++...+..|. ++.++|..+|+++||++||++++....+++.++|||++|||+.++.|+|++.+|.|+|||+|.||||++
T Consensus 105 g~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G 183 (408)
T KOG0140|consen 105 GIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAG 183 (408)
T ss_pred hHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCC
Confidence 9998888886 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEecCC------CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHH
Q 013626 211 FADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (439)
Q Consensus 211 ~ad~~~v~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~ 283 (439)
+|+|++|+||++++ .++.+|+|+.++||++..+.+.+||.|.+++..|+|+||+||.+|+|+.+ .||+..+..
T Consensus 184 ~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~ 263 (408)
T KOG0140|consen 184 HANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGG 263 (408)
T ss_pred ccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhh
Confidence 99999999999764 46899999999999999999999999999999999999999999999886 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhh
Q 013626 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (439)
Q Consensus 284 ~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 363 (439)
++..|..+|+.++|++.++++++.+|+.+|++||+||+++|.+|.+||||.++++.+|++++++++.+|++......+++
T Consensus 264 fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSi 343 (408)
T KOG0140|consen 264 FDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASI 343 (408)
T ss_pred ccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 364 GKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 364 aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
+|.++++.|.+++..++|++||+||..|||+++++||+++.++||||+++++.+|+|.++..
T Consensus 344 AK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~ 405 (408)
T KOG0140|consen 344 AKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQK 405 (408)
T ss_pred HHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999764
No 3
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-78 Score=539.07 Aligned_cols=408 Identities=40% Similarity=0.599 Sum_probs=393.8
Q ss_pred CccccccccCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccC
Q 013626 23 LPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAG 102 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~ 102 (439)
.|.+.+....++...++..|+-..|++.+++.|++|+..+++.+|+++++++.|+..++++...||++++.+|...|+++
T Consensus 23 l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG 102 (432)
T KOG0138|consen 23 LAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLG 102 (432)
T ss_pred CchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhcccccc
Confidence 45556665666666777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCC
Q 013626 103 GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSD 182 (439)
Q Consensus 103 ~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd 182 (439)
..++.||..|+|...+..+..|+.|.|.+....+.+|+++++.+|..+|+|+||++|||.+++|++++||++|||++|||
T Consensus 103 ~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSd 182 (432)
T KOG0138|consen 103 PTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSD 182 (432)
T ss_pred CcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEEEeCCE--EEEEeEEEeecCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEE
Q 013626 183 ASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILL 260 (439)
Q Consensus 183 ~~~~~t~A~~~~~g--~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f 260 (439)
+.+++|+|++++.+ |.|||+|.||+|++.||+++||||.+.++.+..|||+++.+|++.-++..|+++|.+.++.|-+
T Consensus 183 psgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilm 262 (432)
T KOG0138|consen 183 PSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILM 262 (432)
T ss_pred cccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeecccCceee
Confidence 99999999999887 9999999999999999999999999878899999999999999999999999999999999999
Q ss_pred cceecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHH
Q 013626 261 KKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAM 340 (439)
Q Consensus 261 ~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~ 340 (439)
|||+||++++|+...++......++..|+++||..+|+++.+++.+.+|+..|+|||+|++.+|.+|.+|++|+.++..+
T Consensus 263 d~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lg 342 (432)
T KOG0138|consen 263 DGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLG 342 (432)
T ss_pred cCCcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999899889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHH
Q 013626 341 ILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420 (439)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r 420 (439)
..+++++.++.|+++..++.+++.|.+.+-.++++++.++++.||+|+..++.+.|++-|.....+||||.+++.+++||
T Consensus 343 l~~clrl~rLkd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGR 422 (432)
T KOG0138|consen 343 LQACLRLGRLKDQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGR 422 (432)
T ss_pred HHHHHHhhhhhhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCc
Q 013626 421 EVTGIASFKP 430 (439)
Q Consensus 421 ~~lg~~~~~~ 430 (439)
.++|+.+|.|
T Consensus 423 aiTGia~F~~ 432 (432)
T KOG0138|consen 423 AITGIAAFKP 432 (432)
T ss_pred hhhhhhhcCC
Confidence 9999999875
No 4
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=3e-78 Score=542.90 Aligned_cols=370 Identities=28% Similarity=0.436 Sum_probs=358.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCC--HHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCC
Q 013626 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP--FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (439)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (439)
-+++|+..+++.+++|+++++.|.+.++|+.++|+ +++|++|.++|+++++. ++|||.|.++...+.++||++++.+
T Consensus 40 g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g 119 (421)
T KOG0141|consen 40 GLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASG 119 (421)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcC
Confidence 38999999999999999999999999999999994 78999999999999988 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCC
Q 013626 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (439)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~ 210 (439)
+++..++.|+++++.-|.+.|+++||++|||.+.+|+.++++|||||++|||+.++.++|++++++|+|||.|.||||++
T Consensus 120 ~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~ 199 (421)
T KOG0141|consen 120 GVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGP 199 (421)
T ss_pred CcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEecCC-----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHH
Q 013626 211 FADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (439)
Q Consensus 211 ~ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~ 284 (439)
.||.++|.|+++.. .|+++|||+++.||++..+..+|+||||++++++.|+|++||+.++|+.. .++.+++..+
T Consensus 200 ~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgL 279 (421)
T KOG0141|consen 200 DADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGL 279 (421)
T ss_pred CCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCC
Confidence 99999999999643 68999999999999999999999999999999999999999999999987 5777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhH
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 364 (439)
+..|+.+++..+|++++++|.+..|+++|++||++|+.||.+|.++|||++.+.+.|+.++.+++.-|++..+...++.+
T Consensus 280 d~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~ 359 (421)
T KOG0141|consen 280 DLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGV 359 (421)
T ss_pred ChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHh
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 423 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~l 423 (439)
++|+++.+.+|+-+|+|++||.||.+++|+.|++||++...++.||+++.+..|||.+.
T Consensus 360 il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~ 418 (421)
T KOG0141|consen 360 ILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELN 418 (421)
T ss_pred hhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999874
No 5
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.5e-72 Score=565.59 Aligned_cols=409 Identities=88% Similarity=1.394 Sum_probs=380.8
Q ss_pred ccCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCccccCC
Q 013626 30 VAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYG 109 (439)
Q Consensus 30 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~G 109 (439)
+.+++.++.+-+||+..+.+.|+..++++++++++.+++|+.+++.|...+.++...+|.++|++|.+.||+++.+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v~~~G 83 (412)
T PLN02526 4 VAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTIKGYG 83 (412)
T ss_pred cccccCCCCCCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcccccC
Confidence 45777888888999988999999999999999999999999999998887777778899999999999999998779999
Q ss_pred CCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceE
Q 013626 110 CPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTT 189 (439)
Q Consensus 110 G~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~ 189 (439)
|.|+++.+...+++++++.|+++++++.+|..++...|..+|+++||++|||++.+|+.++++++|||++|||+..+.|+
T Consensus 84 G~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~ 163 (412)
T PLN02526 84 CPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTT 163 (412)
T ss_pred CCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeE
Confidence 99999999999999999999998777777776666689999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEEeEEEeecCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCC
Q 013626 190 ATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDED 269 (439)
Q Consensus 190 A~~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~ 269 (439)
|++++|||+|||+|.||||+..|||++|++++++++++.+|+||.+.|||++.+.|+++|+|++++++|+|+||+||+++
T Consensus 164 a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~ 243 (412)
T PLN02526 164 ATKVEGGWILNGQKRWIGNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDED 243 (412)
T ss_pred EEEECCEEEEEEEEeeecCCCccCEEEEEEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHH
Confidence 99999999999999999999999999999998755678899999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 270 RLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCK 349 (439)
Q Consensus 270 ~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~ 349 (439)
+|+...++......++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|+++++|.+++++++++++++++
T Consensus 244 ~l~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~ 323 (412)
T PLN02526 244 RLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCK 323 (412)
T ss_pred hCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99766667677778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCCCC
Q 013626 350 LYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFK 429 (439)
Q Consensus 350 ~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~~~ 429 (439)
.+|.+.......+++|+++++.+.++++.++|+|||+||+++++++|+|||+++..+++|++++++..++|.++|++.++
T Consensus 324 ~~d~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~~~~~ 403 (412)
T PLN02526 324 LYESGKMTPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGIASFK 403 (412)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcCcccC
Confidence 99876655566889999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchhhhccCC
Q 013626 430 PVALATRSRL 439 (439)
Q Consensus 430 ~~~~~~~~~~ 439 (439)
|.. .++|+|
T Consensus 404 ~~~-~~~~~~ 412 (412)
T PLN02526 404 PAA-STRSRL 412 (412)
T ss_pred ccc-cccccC
Confidence 544 477765
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=6.8e-70 Score=543.17 Aligned_cols=374 Identities=42% Similarity=0.712 Sum_probs=355.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccC
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (439)
|++.++++++++++.+++|+++++.|.+.+.++.+.+|.++|++|.+.||+++ + ++|||.|+++.+...++++|++.|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~ 87 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVD 87 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhC
Confidence 77789999999999999999999999988888888999999999999999999 8 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCC
Q 013626 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (439)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a 209 (439)
+++++.+.+|..++...+..+|+++||++|++++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 88 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~ 167 (386)
T cd01151 88 SGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNS 167 (386)
T ss_pred hhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCC
Confidence 99888777776666667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCCChHHHHHHHHHHHH
Q 013626 210 TFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRV 289 (439)
Q Consensus 210 ~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~~~~r~ 289 (439)
..|||++|++++++++++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++++...++......++..|+
T Consensus 168 ~~Ad~~lv~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~~~g~~~~~~~~~~~r~ 247 (386)
T cd01151 168 PIADVFVVWARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLRGPFKCLNNARY 247 (386)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCccccHHHHHHHHHHHHH
Confidence 99999999999876677899999999999999999999999999999999999999999999876777777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHH
Q 013626 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWIT 369 (439)
Q Consensus 290 ~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~ 369 (439)
.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++++.......+++|.+++
T Consensus 248 ~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~ 327 (386)
T cd01151 248 GIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNC 327 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887666677899999999
Q ss_pred HHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 370 ARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 370 ~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
+.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++.++|+
T Consensus 328 ~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 328 GKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred HHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999987
No 7
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2.1e-66 Score=517.09 Aligned_cols=369 Identities=28% Similarity=0.419 Sum_probs=341.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchh
Q 013626 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (439)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (439)
+++++.++++.+++|+++.+.|.+.+.|+.+.+|.++|++|.+.||+++.+ ++|||.|+++.+...++|++++.|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 80 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQ 80 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHH
Confidence 478899999999999999999988888888899999999999999999987 9999999999999999999999999877
Q ss_pred HHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCC
Q 013626 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad 213 (439)
+.+..+. ++...+..+|+++||++||+++.+|+.++++++|||+.|||...+.|++++++|||+|||+|.||||+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (378)
T cd01157 81 TAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN 159 (378)
T ss_pred HHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence 6654443 444566778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC------CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHH
Q 013626 214 VLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAV 286 (439)
Q Consensus 214 ~~~v~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~ 286 (439)
|++|+++++++ .++.+|+||++.|||++.+.|+++|+++++++++.||||+||++++|+.. .++......+..
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 239 (378)
T cd01157 160 WYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDK 239 (378)
T ss_pred EEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhh
Confidence 99999997542 35789999999999999999999999999999999999999999999865 577777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHH
Q 013626 287 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKS 366 (439)
Q Consensus 287 ~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~ 366 (439)
.|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.++.+.......+++|+
T Consensus 240 ~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~ 319 (378)
T cd01157 240 TRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKA 319 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988876544556788999
Q ss_pred HHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 367 WITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 367 ~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
++++.+.++++.++++|||.||+++++++|+|||++...+++|++++++..|++.++|
T Consensus 320 ~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 320 FAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999876
No 8
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.2e-66 Score=515.47 Aligned_cols=371 Identities=25% Similarity=0.348 Sum_probs=340.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhc-cccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEI-APIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
|++.+|++++++++.+++|+++++ .+...+.++.+.||.++|++|++.||+++.+ ++|||.|+++.++..++++++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~ 80 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRL 80 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 566799999999999999999875 5666778888899999999999999999987 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecC
Q 013626 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (439)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~ 208 (439)
|+|+++.+.++. ....+..+|+++||++|||++.+|+.++|+++|||+.|||+..+.|+|++++|||+|||+|.||||
T Consensus 81 ~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~ 158 (380)
T PRK03354 81 GAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITS 158 (380)
T ss_pred CcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcC
Confidence 999876655543 245678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHH
Q 013626 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (439)
Q Consensus 209 a~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~ 284 (439)
+.+|||++|+|+++.+ .++.+|+||++.|||++. .|+++|+|++++++|.||||+||++++++.. +++......+
T Consensus 159 ~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~ 237 (380)
T PRK03354 159 SAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEF 237 (380)
T ss_pred CCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHH
Confidence 9999999999997432 356789999999999986 6999999999999999999999999999875 4666556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhH
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 364 (439)
+..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.++.+.......+++
T Consensus 238 ~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~a 317 (380)
T PRK03354 238 DHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMC 317 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999888766556678899
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
|+++++.+.++++.+++++||.||+++++++|+|||+++..+++|++++++..++|.+++
T Consensus 318 K~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (380)
T PRK03354 318 KYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLK 377 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998853
No 9
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=5.4e-66 Score=517.47 Aligned_cols=373 Identities=26% Similarity=0.440 Sum_probs=349.0
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHH--HHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
++.+++++.++++.+++|+++++.|.+.+.|+.+.+|.+ +|++|++.||+++.+ ++|||.|+++.+...+++++++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~ 102 (404)
T PLN02519 23 SLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRA 102 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhh
Confidence 456889999999999999999999998888888888876 799999999999987 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecC
Q 013626 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (439)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~ 208 (439)
|+++++.+.+|...+...+..+|+++||++|||++.+|+.++|+++|||++|||...+.|+|++++|||+|||+|+|+||
T Consensus 103 ~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~ 182 (404)
T PLN02519 103 SGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTN 182 (404)
T ss_pred cccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecC
Confidence 99999888888766666788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHH
Q 013626 209 STFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (439)
Q Consensus 209 a~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~ 284 (439)
+..||+++|+|+++++ .++.+|+||.+.|||++.+.|+++|+++++++++.|+||+||++++++.. .++......+
T Consensus 183 a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~ 262 (404)
T PLN02519 183 GPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGL 262 (404)
T ss_pred CCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHH
Confidence 9999999999997642 46889999999999999999999999999999999999999999999875 5676667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhH
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 364 (439)
+..|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++|++|.+++++++++++++++.++.+.......+.+
T Consensus 263 ~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~a 342 (404)
T PLN02519 263 DLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGV 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876556677889
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
|+++++.+.+++..++++|||.||+++++++|+|||++...+++|++++++..+++.+++
T Consensus 343 k~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~ 402 (404)
T PLN02519 343 ILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFK 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998865
No 10
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.2e-66 Score=514.29 Aligned_cols=370 Identities=22% Similarity=0.324 Sum_probs=339.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhcc-ccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIA-PIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
|++.+++++..+++.+++|+++.+. +...++++.+.+|+++|++|+++||+++.+ ++|||.|+++.+...+++++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~ 80 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKC 80 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhc
Confidence 5677899999999999999999875 466777888899999999999999999987 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhh-hcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeec
Q 013626 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSL-AQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (439)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l-~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is 207 (439)
|.+ .+.+ +..++...+..+|+++||++||+++ .+|+.++++++|||++|||+..+.|+|++++|||+|||+|+|||
T Consensus 81 ~~~-~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is 157 (381)
T PRK12341 81 GAP-AFLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFIT 157 (381)
T ss_pred Chh-HHHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEc
Confidence 987 3333 3334555678899999999999998 59998899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEecCC----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHH
Q 013626 208 NSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSK 282 (439)
Q Consensus 208 ~a~~ad~~~v~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~ 282 (439)
|+..||+++|+|+++++ .++.+|+||++.|||++. .|+++|++++++++|+|+||+||++++|+.. .++.....
T Consensus 158 ~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~~-~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 236 (381)
T PRK12341 158 GAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKIN-PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMY 236 (381)
T ss_pred CCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceeec-ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHH
Confidence 99999999999997542 357899999999999994 6999999999999999999999999999875 56666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhh
Q 013626 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHAS 362 (439)
Q Consensus 283 ~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 362 (439)
.++.+|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++++++.++++......++
T Consensus 237 ~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~ 316 (381)
T PRK12341 237 NFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAA 316 (381)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999998888766556788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 363 LGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 363 ~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
++|+++++.+.++++.+++++||.||.++++++|+|||+++..+++|++++++..+++.+++
T Consensus 317 ~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 317 LAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 11
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=9e-66 Score=511.72 Aligned_cols=369 Identities=30% Similarity=0.463 Sum_probs=345.2
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchh
Q 013626 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (439)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (439)
+++++.++++.+++|+++++.|.+.++|..+.+|+++|+.|++.||+++.+ ++|||.|+++.+...++++++++|++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~ 80 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTA 80 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHH
Confidence 478899999999999999999998888888899999999999999999987 9999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCC
Q 013626 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad 213 (439)
+++.+|. .+...+..+|+++||++|+|++.+|+.++++++|||++|||...+.|++++++|||+|||+|+||||+..||
T Consensus 81 ~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad 159 (375)
T cd01162 81 AYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159 (375)
T ss_pred HHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence 7777775 455678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC--CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHH
Q 013626 214 VLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVM 290 (439)
Q Consensus 214 ~~~v~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~ 290 (439)
+++|+++++++ .++.+|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++......+...|+.
T Consensus 160 ~~~v~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~ 239 (375)
T cd01162 160 VYVVMARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLN 239 (375)
T ss_pred EEEEEEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 99999997542 46889999999999999999999999999999999999999999999875 5677777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhhhHHHHHH
Q 013626 291 VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGKSWIT 369 (439)
Q Consensus 291 ~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~aK~~~~ 369 (439)
+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++.+++.++++.. .....+++|++++
T Consensus 240 ~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~ 319 (375)
T cd01162 240 IASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFAT 319 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988643 3345778999999
Q ss_pred HHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 370 ARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 370 ~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
+.+.++++.++++|||.||+.+++++|+|||++...+++|++++++..+++.++|
T Consensus 320 ~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 320 DECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred HHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999876
No 12
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=3e-66 Score=514.01 Aligned_cols=364 Identities=20% Similarity=0.238 Sum_probs=327.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHH--HHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccC
Q 013626 53 DLLTSEEQAVRMKVRECMEKEIAPIMAE--YWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (439)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (439)
+.++++|+++++.+++|+.+++.+...+ .++.+.||+++|++|.+.||+++.+ ++|||.|+++.+.+.++|++++.+
T Consensus 2 ~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 2 FDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 4578999999999999999988765433 3566789999999999999999987 999999999999999999999977
Q ss_pred CchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCC
Q 013626 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (439)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a 209 (439)
.+.. .+ .+..++...+..+|+++||++|||++.+|+.++++++|||++|||...+.|+|++++|+|+|||+|.||+|+
T Consensus 82 ~~~~-~~-~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEP-YL-ATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchH-HH-HHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 5433 22 222244567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecC----CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHH
Q 013626 210 TFADVLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (439)
Q Consensus 210 ~~ad~~~v~a~~~~----~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~ 284 (439)
..||+++|+|++++ .+++++|+||++.|||++.+.+.++|+ ++++|.||||+||++++++.. +++......+
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l 236 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVV 236 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHH
Confidence 99999999999853 257899999999999999887777776 468999999999999999875 6778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CChhhhh
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA--MTPGHAS 362 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~ 362 (439)
+..|+.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.++++++|++++++++..+.+. .....++
T Consensus 237 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a 316 (378)
T TIGR03203 237 DDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIA 316 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998776532 3345688
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHH
Q 013626 363 LGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGRE 421 (439)
Q Consensus 363 ~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~ 421 (439)
++|+++++.+.++++.|+|+|||+||+++++++|+|||++...+++|++++++..++..
T Consensus 317 ~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 317 AAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA 375 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999883
No 13
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=6.5e-66 Score=512.20 Aligned_cols=364 Identities=26% Similarity=0.334 Sum_probs=337.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchh
Q 013626 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (439)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (439)
|++++.++++.+++|+++.+.|...+.++.+.+|.++|++|.+.||+++.+ ++|||.|+++.+...+++++++.|++++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~ 80 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS 80 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 578899999999999999999998888888899999999999999999987 8999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCC
Q 013626 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad 213 (439)
+....+ .+++..+..+|+++||++|||++.+|+.++++++|||++|||...+.|+|++++|||+|||+|.||||+..||
T Consensus 81 ~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad 159 (372)
T TIGR03207 81 YVNLLA-SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD 159 (372)
T ss_pred HHHHhh-hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence 654433 3455678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecC----CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHH
Q 013626 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (439)
Q Consensus 214 ~~~v~a~~~~----~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r 288 (439)
|++|++++++ ..++.+|+||++.|||++. .|+++|++++++++|.|+||+||++++++.. .++......++..|
T Consensus 160 ~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 238 (372)
T TIGR03207 160 AAVVFARTGSEAEGARGISAFLVPMDLPGITRN-RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR 238 (372)
T ss_pred EEEEEEEcCCCCCCCCceEEEEEcCCCCCeecC-cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH
Confidence 9999999853 2367899999999999975 6999999999999999999999999999875 57777778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHH
Q 013626 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWI 368 (439)
Q Consensus 289 ~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~ 368 (439)
+.+++.++|+++++++.+++|+++|+|||+||.++|.+|++|++|.+++++++++++++++.++.+.......+++|+++
T Consensus 239 ~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~ 318 (372)
T TIGR03207 239 ALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWA 318 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887655555688999999
Q ss_pred HHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHH
Q 013626 369 TARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGRE 421 (439)
Q Consensus 369 ~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~ 421 (439)
++.+.++++.++|+|||.||..+ +++|+|||++...+++|++++++.+|++.
T Consensus 319 ~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 319 PKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999 99999999999999999999999999874
No 14
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.4e-65 Score=510.92 Aligned_cols=370 Identities=31% Similarity=0.478 Sum_probs=346.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchh
Q 013626 55 LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCS 133 (439)
Q Consensus 55 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~ 133 (439)
++++++++++.+++|+++++.|.+.+.|+.+.+|.++|+.|++.||+++.+ ++|||.|+++.+...++++|++.|++++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~ 81 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVA 81 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHH
Confidence 578999999999999999999988888888889999999999999999987 9999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCC
Q 013626 134 TFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (439)
Q Consensus 134 ~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad 213 (439)
+.+..|..++...|..+|+++||++|+|++.+|+.++++++|||.+|||...+.|+|++++|||+|||+|+|+||+..||
T Consensus 82 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~ 161 (376)
T cd01156 82 LSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD 161 (376)
T ss_pred HHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence 87777766666678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHH
Q 013626 214 VLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (439)
Q Consensus 214 ~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~ 289 (439)
+++|+++++++ .++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++|+.. .++......+...|+
T Consensus 162 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 241 (376)
T cd01156 162 TLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERL 241 (376)
T ss_pred EEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHH
Confidence 99999997643 46789999999999999999999999999999999999999999999875 567777788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHH
Q 013626 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWIT 369 (439)
Q Consensus 290 ~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~ 369 (439)
.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.++.+.......+.+|.+++
T Consensus 242 ~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~ 321 (376)
T cd01156 242 VLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAA 321 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887655556788999999
Q ss_pred HHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 370 ARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 370 ~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
+.+.++++.++++|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 322 ~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 322 EKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999998753
No 15
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=3e-66 Score=541.32 Aligned_cols=416 Identities=20% Similarity=0.246 Sum_probs=362.4
Q ss_pred CCCCCCCchhhhhHHhhcCCCCccccccccCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHHHHhhc---cccH
Q 013626 2 TIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEI---APIM 78 (439)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~~ 78 (439)
..+++.....||+..|++||....... .....+.+......+++|+..|...+++++.++++.+++|+.+.. .|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~l~~~l~~~~~~~r~~v~~~~~~~~~~~~~~~ 87 (686)
T PLN02636 9 RAEDDGEIAARRIQRLSLHLSPVPLPK-EEQLSRLVCARSIKLSVNTEKLSLYMRGKHRDIQEKIYEFFNSRPDLQTPVE 87 (686)
T ss_pred ccccchhHHHHHHHHHHHhcCcCCCCC-cccCCcccccccccCCCCHHHHHhhcCCcHHHHHHHHHHHHHhCccccCCch
Confidence 456677888999999999998544332 112222222234456778888999999999999999999998763 5666
Q ss_pred HHHHHhcCCC-HHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHH
Q 013626 79 AEYWEKAEFP-FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQK 156 (439)
Q Consensus 79 ~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk 156 (439)
..+++.++++ .++++.+.+.|++++.+ ++ ++.++..+.|++++.|++++..+.+|.++++..|..+||++||
T Consensus 88 ~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk 161 (686)
T PLN02636 88 ISKDEHRELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHR 161 (686)
T ss_pred hhHHHhhhhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHH
Confidence 6677778888 88999999999999866 44 7889999999999999988888889988888899999999999
Q ss_pred hhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEE-----eEEEeecCCCC-CCEEEEEEEecC-----
Q 013626 157 QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNSTF-ADVLVIFARNTT----- 223 (439)
Q Consensus 157 ~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~Ln-----G~K~~is~a~~-ad~~~v~a~~~~----- 223 (439)
++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+||+|++. ||+++|+|++..
T Consensus 162 ~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~ 241 (686)
T PLN02636 162 DKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDS 241 (686)
T ss_pred HHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCc
Confidence 9999999999999999999999999999999999998 7899999 99999999976 999999999851
Q ss_pred ----CCCeEEEEEeCC-------CCCeeeeccccccccccccceeEEEcceecCCCCCCCC-----------------CC
Q 013626 224 ----TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG-----------------VN 275 (439)
Q Consensus 224 ----~~~~~~flV~~~-------~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~-----------------~~ 275 (439)
+.|+++|+||.+ .|||++.++++|+|+++++++.|.||||+||.+++|+. ..
T Consensus 242 ~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~ 321 (686)
T PLN02636 242 KGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINK 321 (686)
T ss_pred cCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcch
Confidence 348999999987 59999999999999999999999999999999999952 13
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc------cccchhHHHHHHHHHHHHHHHH----HHHH
Q 013626 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP------LAAFQINQQKLVQMLGNIQAMI----LVGW 345 (439)
Q Consensus 276 ~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~p------i~~~~~vq~~la~~~~~~~a~~----~~~~ 345 (439)
+|......+..+|+.+++.++|++++|++++++|+++|+|||+| |++||.+|++|++|.+.+++++ .+++
T Consensus 322 gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~ 401 (686)
T PLN02636 322 RFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVE 401 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999999999999999999999999999999999 9999999999999999999965 5555
Q ss_pred HHHHHHHcCC-----CChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHH
Q 013626 346 RLCKLYEKGA-----MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420 (439)
Q Consensus 346 ~~~~~~~~~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r 420 (439)
.+++..+.+. ..+..++++|+++++.+.+++++|+|+|||+||+.+++++++|||++...++||++++++.+++|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr 481 (686)
T PLN02636 402 RYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAA 481 (686)
T ss_pred HHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHH
Confidence 5555554433 24556889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 013626 421 EVTG 424 (439)
Q Consensus 421 ~~lg 424 (439)
.+++
T Consensus 482 ~ll~ 485 (686)
T PLN02636 482 DLLK 485 (686)
T ss_pred HHHH
Confidence 8865
No 16
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-65 Score=515.58 Aligned_cols=370 Identities=24% Similarity=0.347 Sum_probs=344.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCc
Q 013626 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (439)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s 131 (439)
+.+++++.++++.+++|+++++.|.+.+.|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|++++.|++
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 114 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPG 114 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCch
Confidence 46899999999999999999999999888888899999999999999999977 99999999999999999999999998
Q ss_pred hhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCC-EEEEEeEEEeecCCC
Q 013626 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQKRWIGNST 210 (439)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~-g~~LnG~K~~is~a~ 210 (439)
+++.+.+|..+....+..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++| ||+|||+|.||||+.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~ 194 (410)
T PTZ00461 115 FCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGT 194 (410)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCc
Confidence 8776666755555677889999999999999999999999999999999999999999999764 799999999999999
Q ss_pred CCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHH
Q 013626 211 FADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRV 289 (439)
Q Consensus 211 ~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~ 289 (439)
.|||++|.|+++ +++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.. .++......++..|+
T Consensus 195 ~Ad~~lv~a~~~--~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~ 272 (410)
T PTZ00461 195 VADVFLIYAKVD--GKITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERV 272 (410)
T ss_pred cCCEEEEEEEeC--CceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHH
Confidence 999999999975 45889999999999999999999999999999999999999999999875 567666777889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHH
Q 013626 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWIT 369 (439)
Q Consensus 290 ~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~ 369 (439)
.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.++.+.......+++|.+++
T Consensus 273 ~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~ 352 (410)
T PTZ00461 273 TLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFAT 352 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988776544556778999999
Q ss_pred HHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 370 ARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 370 ~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
+.+.++++.++|+|||+||+.+++++|+|||++...+++|++++++..+++.+++
T Consensus 353 ~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~ 407 (410)
T PTZ00461 353 PIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLK 407 (410)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998754
No 17
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.7e-65 Score=509.46 Aligned_cols=365 Identities=27% Similarity=0.407 Sum_probs=340.2
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHH
Q 013626 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTF 135 (439)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~ 135 (439)
++++++++.+++|+.+++.|.+.++|+.+.+|+++|++|+++||+++.+ ++|||.|+++.+...+++++++.+.+ ++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~ 79 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPG 79 (372)
T ss_pred ChHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHH
Confidence 3678999999999999999988888888899999999999999999987 99999999999999999999996654 666
Q ss_pred HHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEE
Q 013626 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVL 215 (439)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~ 215 (439)
+.+|..++...+..+|+++||++|||++.+|+.++|+++|||++|||...+.|++++++|||+|||+|.||||+..||++
T Consensus 80 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~ 159 (372)
T cd01160 80 LSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVV 159 (372)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEE
Confidence 77776566678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHH
Q 013626 216 VIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVM 290 (439)
Q Consensus 216 ~v~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~ 290 (439)
+|.++++++ +++.+|+||++.||+++.+.|+++||+++++++|.|+||+||++++|+.. .++......++..|+.
T Consensus 160 ~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~ 239 (372)
T cd01160 160 IVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLL 239 (372)
T ss_pred EEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHH
Confidence 999998643 46889999999999999999999999999999999999999999999876 5677777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHH
Q 013626 291 VAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITA 370 (439)
Q Consensus 291 ~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~ 370 (439)
+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++.+++.++.+......++++|+++++
T Consensus 240 ~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~ 319 (372)
T cd01160 240 IAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATE 319 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888776556678899999999
Q ss_pred HHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHH
Q 013626 371 RARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 422 (439)
Q Consensus 371 ~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~ 422 (439)
.+.++++.++++|||+||+++++++|+|||+++..+++|++++++..|++.+
T Consensus 320 ~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 320 LQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999875
No 18
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=3.8e-65 Score=512.36 Aligned_cols=375 Identities=26% Similarity=0.359 Sum_probs=345.0
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHh
Q 013626 48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (439)
Q Consensus 48 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (439)
|..|++.+++++.++++.+++|+++++.|. ++++.+.+|.++|++|++.||+++.+ ++|||.|+++.+...++|+++
T Consensus 20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~ 97 (409)
T cd01161 20 PSVLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG 97 (409)
T ss_pred ccccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHh
Confidence 455777889999999999999999988875 35667789999999999999999987 999999999999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEEeEEE
Q 013626 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQKR 204 (439)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~LnG~K~ 204 (439)
+ |+++++.+.+|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||...+.|+|+++ +|||+|||+|.
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~ 176 (409)
T cd01161 98 M-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKI 176 (409)
T ss_pred h-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEE
Confidence 9 99988888788665555678899999999999999999999999999999999999999999994 55799999999
Q ss_pred eecCCCCCCEEEEEEEecC---C----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CC
Q 013626 205 WIGNSTFADVLVIFARNTT---T----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NS 276 (439)
Q Consensus 205 ~is~a~~ad~~~v~a~~~~---~----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~ 276 (439)
||||+..|||++|+|+++. + +++.+|+||.+.|||++.++|+++|++++++++|.|+||+||++++++.. ++
T Consensus 177 ~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g 256 (409)
T cd01161 177 WITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDG 256 (409)
T ss_pred eecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChH
Confidence 9999999999999999752 1 46789999999999999999999999999999999999999999999875 56
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 013626 277 FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM 356 (439)
Q Consensus 277 ~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~ 356 (439)
+......++.+|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++++++.++++..
T Consensus 257 ~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~ 336 (409)
T cd01161 257 FKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLK 336 (409)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred --ChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 357 --TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 357 --~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
....++++|+++++.+.++++.++++|||.||.++++++|+|||+++..+++|++++++.+|++..|+.
T Consensus 337 ~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 337 AEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 345678999999999999999999999999999999999999999999999999999999999998764
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-63 Score=521.64 Aligned_cols=362 Identities=25% Similarity=0.299 Sum_probs=324.4
Q ss_pred CCCHHHHHHHHH-HHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCc
Q 013626 54 LLTSEEQAVRMK-VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (439)
Q Consensus 54 ~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s 131 (439)
.|++|++++++. +++|++. + ....+.++.+.+|+++|+.|++.||+++.+ ++|||.|++..+...++|++++.|++
T Consensus 78 ~Ls~ee~~~~d~~v~~l~~~-~-~~~~~~~~~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s 155 (777)
T PRK09463 78 TLTAEEQAFLDGPVEELCRM-V-NDWQITHELADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGT 155 (777)
T ss_pred CCCHHHHHHHHHHHHHHHHH-H-HHHHHhccccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcc
Confidence 389999999996 7777764 2 112222234689999999999999999987 99999999999999999999999988
Q ss_pred hhHHHHHHhhHHH-HHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEE-----EEeCC---EEEEEeE
Q 013626 132 CSTFILVHSSLAM-LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTA-----TKVEG---GWILEGQ 202 (439)
Q Consensus 132 ~~~~~~~~~~~~~-~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A-----~~~~~---g~~LnG~ 202 (439)
++..+.+|.+++. .+|..+|+++||++|||++++|+.++|+++|||++|||+.++.|++ +++++ ||+|||+
T Consensus 156 ~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~ 235 (777)
T PRK09463 156 LAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWN 235 (777)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEE
Confidence 8777777776653 4788999999999999999999999999999999999999888654 34555 6999999
Q ss_pred EEeecCCCCCCEEEEEEEe-cC--------CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCC
Q 013626 203 KRWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (439)
Q Consensus 203 K~~is~a~~ad~~~v~a~~-~~--------~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~ 273 (439)
|.||||++.||+++|++++ ++ +.++++|+||.+.|||++.+.++++|++ ..+++++|+||+||.+++||.
T Consensus 236 K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~ 314 (777)
T PRK09463 236 KRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGG 314 (777)
T ss_pred EEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhccc
Confidence 9999999999999999985 21 2478999999999999999999999999 569999999999999999986
Q ss_pred ----CCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 274 ----VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348 (439)
Q Consensus 274 ----~~~~~~~~~~~~~~r-~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~ 348 (439)
..++...+..++.+| +.+++.++|+++++++.+++|+++|+|||+||++||.||++|++|.+++++++++.+.++
T Consensus 315 ~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a 394 (777)
T PRK09463 315 PKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTT 394 (777)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999 899999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCc--CcHHHHhhccCCcccccchHHHHHHHH
Q 013626 349 KLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSD--FLVAKAFCDIEPIYTYEGTYDINTLVT 418 (439)
Q Consensus 349 ~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~--~~~~r~~rD~~~~~~~~G~~~~~~~~i 418 (439)
+.+|.+......++++|+++++.+.+++++|+|+|||+||+.+ ++++|+|||++...+++|++++++..+
T Consensus 395 ~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 395 AAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 8888876556678899999999999999999999999999997 999999999999999999999999876
No 20
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=5e-63 Score=492.12 Aligned_cols=367 Identities=38% Similarity=0.563 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHH
Q 013626 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (439)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~ 136 (439)
++.++++.+++|+++++.+.+.+.++.+.+|.+.|+.|++.||+++.+ ++|||.|.++.+...++++++++|+|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~ 81 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIV 81 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHH
Confidence 678999999999999898888888888889999999999999999987 9999999999999999999999999999988
Q ss_pred HHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEE
Q 013626 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLV 216 (439)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~ 216 (439)
.+|..++...+..+|+++|+++|++++.+|+.++++++|||.+|||...+.+++++++|||+|||+|.|+||+..|||++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~l 161 (373)
T cd01158 82 SVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYI 161 (373)
T ss_pred HHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEE
Confidence 88876666788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHH
Q 013626 217 IFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (439)
Q Consensus 217 v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~a 292 (439)
|.++++++ .++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++++.. .++......+...|+.++
T Consensus 162 v~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~ 241 (373)
T cd01158 162 VFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIA 241 (373)
T ss_pred EEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99997543 35789999999999999999999999999999999999999999999875 466666777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHH
Q 013626 293 WQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARA 372 (439)
Q Consensus 293 a~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a 372 (439)
+.++|+++++++.+++|+++|.+||+|+.++|.+|+++++|.+++++++++++++++.++.+.......+++|+++++.+
T Consensus 242 a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a 321 (373)
T cd01158 242 AQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVA 321 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876655567789999999999
Q ss_pred HHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 373 RETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 373 ~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
.++++.+++++||.||.++++++|+|||++...+++|++++++..+++.+++
T Consensus 322 ~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 322 MRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999864
No 21
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1.5e-63 Score=519.82 Aligned_cols=421 Identities=21% Similarity=0.254 Sum_probs=358.3
Q ss_pred CCCCCCCCchhhhhHHhhcCCCCccccccccCCCCCCCC-CCCC-----CCCCccccccCCCHHHHHHHHHHHHHHHhhc
Q 013626 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPAS-KFPP-----CASDYYQFDDLLTSEEQAVRMKVRECMEKEI 74 (439)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~-----~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 74 (439)
|..+.+++.++||+.+|+.||..|.+. ..+...+.+.. +.|| .++|+..|...|..+..+.++++++++.+.-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sf~~~~l~~~l~g~~~~~r~~~~~~~~~~p 79 (680)
T PLN02312 1 MMAGMSPSAAARRAHVLANHLAQSPPS-PNSSLTPSPCLQYSPPELNESYAFDVKEMRKLLDGHNLEDRDWLFGLMMQSD 79 (680)
T ss_pred CCCccchhHHHHHHHHHHHhccCCCCC-CcccCCchhhhhcCCccccccCCCCHHHHHHHhCCccHHHHHHHHHHHhcCc
Confidence 678899999999999999999864322 22222222211 1222 3556666777777777778888888876431
Q ss_pred --c-----------ccH-HHHHHhcCCCHHHHHHHHhccccCCccccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHh
Q 013626 75 --A-----------PIM-AEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHS 140 (439)
Q Consensus 75 --~-----------~~~-~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~ 140 (439)
. |.. ...++..+++.+.++++.+.|+++..+++. |.+ ++.....++|++++.|++++..+.+|.
T Consensus 80 ~f~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~pe~-g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~ 157 (680)
T PLN02312 80 LFNSKRRGGRVFVSPDYNQTMEQQREITMKRILYLLERGVFRGWLTET-GPE-AELRKLALLEVIGIYDHSLAIKLGVHF 157 (680)
T ss_pred cccccccccccccCCccCCCHHHHHHhHHHHHHHHHHhhhcCCCCCCC-CCc-cHHHHHHHHHHHHHhcchHHHHHHhhh
Confidence 1 111 123556788899999999999999877442 333 688889999999999998887788998
Q ss_pred hHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEE-----eEEEeecCC-CCC
Q 013626 141 SLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGNS-TFA 212 (439)
Q Consensus 141 ~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~Ln-----G~K~~is~a-~~a 212 (439)
++++..|..+||++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+||+|+ ..|
T Consensus 158 ~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A 237 (680)
T PLN02312 158 FLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHA 237 (680)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccC
Confidence 88888999999999999999999999999999999999999999999999997 5789999 799999998 789
Q ss_pred CEEEEEEEecC---CCCeEEEEEeC---C---CCCeeeeccccccccccccceeEEEcceecCCCCCCCC----------
Q 013626 213 DVLVIFARNTT---TNQINGYLVKK---D---APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG---------- 273 (439)
Q Consensus 213 d~~~v~a~~~~---~~~~~~flV~~---~---~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~---------- 273 (439)
|+++|+|++.. +.|+++|+||. + .|||++.++++|+|+++++++.|.||||+||++++|+.
T Consensus 238 ~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y 317 (680)
T PLN02312 238 THTIVFSQLHINGKNEGVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKY 317 (680)
T ss_pred CEEEEEEEECCCCCCCCeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCce
Confidence 99999999853 25899999983 3 89999999999999999999999999999999999974
Q ss_pred -------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc----c---cccchhHHHHHHHHHHHHHH
Q 013626 274 -------VNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA----P---LAAFQINQQKLVQMLGNIQA 339 (439)
Q Consensus 274 -------~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~----p---i~~~~~vq~~la~~~~~~~a 339 (439)
..++......+..+|+.+++.++|++++|++.+++|+++|+|||+ | |++||.+|++|++|.+++++
T Consensus 318 ~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a 397 (680)
T PLN02312 318 VSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYA 397 (680)
T ss_pred ecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHH
Confidence 245677778899999999999999999999999999999999995 4 99999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-----CChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHH
Q 013626 340 MILVGWRLCKLYEKGA-----MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDIN 414 (439)
Q Consensus 340 ~~~~~~~~~~~~~~~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~ 414 (439)
++.....+.+.++++. ..+..++++|+++++.+.+++++|+|+|||+||+.+++++++|||++...++||+++++
T Consensus 398 ~~~~a~~l~~~~~~~~~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl 477 (680)
T PLN02312 398 MSFAANDLKMIYVKRTPESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVL 477 (680)
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHH
Confidence 9888888888776543 24567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 013626 415 TLVTGREVTG 424 (439)
Q Consensus 415 ~~~i~r~~lg 424 (439)
+.+++|.+++
T Consensus 478 ~~~iAr~ll~ 487 (680)
T PLN02312 478 MQQVSKALLA 487 (680)
T ss_pred HHHHHHHHHH
Confidence 9999998865
No 22
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=9e-63 Score=492.99 Aligned_cols=365 Identities=19% Similarity=0.226 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHh-----------cCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHh
Q 013626 59 EQAVRMKVRECMEKEIAPIMAEYWEK-----------AEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (439)
Q Consensus 59 ~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (439)
.+++++.+++|+++++.|...++++. .++++++|+.++++||+++.+ ++|||.|+++.+...++|+++
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~ 82 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETG 82 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHh
Confidence 57899999999999999987777643 123358899999999999987 999999999999999999999
Q ss_pred ccCCc-hhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCC-CCCCcCCcceEEEEeCCEEEEEeEEE
Q 013626 127 RVDAS-CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTATKVEGGWILEGQKR 204 (439)
Q Consensus 127 ~~d~s-~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~t~A~~~~~g~~LnG~K~ 204 (439)
+++.. .++....+...+...+..+|+++||++|||++.+|+.++++++|||+ .|||...+.|++++++|||+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~ 162 (394)
T cd01155 83 RSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKW 162 (394)
T ss_pred hhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEE
Confidence 98633 22212222222345788999999999999999999999999999997 58999999999999999999999999
Q ss_pred eecCCCC--CCEEEEEEEecCC-----CCeEEEEEeCCCCCeeeecccccccccc--ccceeEEEcceecCCCCCCCCC-
Q 013626 205 WIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRI--VQNGDILLKKVFVPDEDRLPGV- 274 (439)
Q Consensus 205 ~is~a~~--ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~Glrg--~~~~~v~f~~v~Vp~~~~l~~~- 274 (439)
|+||+.+ +|+++|+++++++ .++.+|+||++.||+++.+.|+++|+|+ +++++|.|+||+||++++++..
T Consensus 163 ~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~ 242 (394)
T cd01155 163 WSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEG 242 (394)
T ss_pred EEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCC
Confidence 9999955 7899999997532 3688999999999999999999999997 6789999999999999999765
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 013626 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (439)
Q Consensus 275 ~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~ 354 (439)
.++......++..|+..++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++++
T Consensus 243 ~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~ 322 (394)
T cd01155 243 RGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV 322 (394)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56777777888899999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CC--ChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHh
Q 013626 355 AM--TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 423 (439)
Q Consensus 355 ~~--~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~l 423 (439)
.. .....+++|+++++.+.++++.++++|||+||+++++++|+|||++...+++|++++++.+|++.++
T Consensus 323 ~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 323 GNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 32 3466889999999999999999999999999999999999999999999999999999999999874
No 23
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=7.3e-62 Score=485.64 Aligned_cols=367 Identities=23% Similarity=0.277 Sum_probs=323.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHH-HhcCCCH----HHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHh
Q 013626 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYW-EKAEFPF----HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIA 126 (439)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la 126 (439)
+.++++|+++++.+++|+.+++.|...+.+ +...+|. ++|++|.++||+++.+ ++|||.|+++.+...++|+++
T Consensus 2 ~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg 81 (395)
T TIGR03204 2 LAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQ 81 (395)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998888765433 3335664 8999999999999987 999999999999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEee
Q 013626 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206 (439)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~i 206 (439)
+++.+.++.+.++ ++...|..+|+++||++|||++.+|+.++++++|||++|||+..+.|+|++++|+|+|||+|.||
T Consensus 82 ~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~v 159 (395)
T TIGR03204 82 SAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWT 159 (395)
T ss_pred hcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEee
Confidence 9998876543332 33456888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEecCC----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHH
Q 013626 207 GNSTFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (439)
Q Consensus 207 s~a~~ad~~~v~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (439)
+|+..||+++|+++++++ .++++|+||.+.|||++.+...+.| ++++++|.|+||+||++++|+.. .++....
T Consensus 160 t~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~ 237 (395)
T TIGR03204 160 TLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAK 237 (395)
T ss_pred cCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 999999999999997532 4689999999999999987666655 67899999999999999999875 5777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC-CChh
Q 013626 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE-KGA-MTPG 359 (439)
Q Consensus 282 ~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~ 359 (439)
..++..|+++++ +|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|+++++++.... .+. ....
T Consensus 238 ~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~ 315 (395)
T TIGR03204 238 FLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNP 315 (395)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 888999999876 899999999999999999999999999999999999999999999999999975432 222 2335
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH----------hCcccccCc----CcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 360 HASLGKSWITARARETVALGREL----------LGGNGILSD----FLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 360 ~~~~aK~~~~~~a~~~~~~a~~~----------~Gg~g~~~~----~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
.++++|.++++.+.++++.++|+ |||+||+.+ ++++++|||++...+++|++++++.+|+|.++|+
T Consensus 316 ~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~~ 395 (395)
T TIGR03204 316 ASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLGL 395 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcCC
Confidence 78999999999999999999985 889999965 4799999999999999999999999999998863
No 24
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=6.8e-62 Score=507.16 Aligned_cols=358 Identities=25% Similarity=0.304 Sum_probs=314.8
Q ss_pred CCHHHHHHHH-HHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCch
Q 013626 55 LTSEEQAVRM-KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASC 132 (439)
Q Consensus 55 l~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~ 132 (439)
|++|++++.+ .+++++.. + ......++.+.+|+++|+.|++.||+++.+ ++|||.|++..+...++|++++.+.++
T Consensus 78 l~~eeq~fl~~~v~~l~~~-~-~e~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~ 155 (774)
T PRK13026 78 LTAEEQAFIDNEVETLLTM-L-DDWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSA 155 (774)
T ss_pred cCHHHHHHHHHHHHHHHhh-h-hhhhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccch
Confidence 7777766655 56777552 2 223333557899999999999999999987 999999999999999999999988888
Q ss_pred hHHHHHHhhHH-HHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEE-----EeCC---EEEEEeEE
Q 013626 133 STFILVHSSLA-MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTAT-----KVEG---GWILEGQK 203 (439)
Q Consensus 133 ~~~~~~~~~~~-~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~-----~~~~---g~~LnG~K 203 (439)
+..+.+|.+++ +.+|..+|+++||++|||++++|+.++|+++|||++|||+.++.|+++ ++++ ||+|||+|
T Consensus 156 a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K 235 (774)
T PRK13026 156 AVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDK 235 (774)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEE
Confidence 77677776655 357889999999999999999999999999999999999999986654 4666 69999999
Q ss_pred EeecCCCCCCEEEEEEEe-cC--------CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCC-
Q 013626 204 RWIGNSTFADVLVIFARN-TT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG- 273 (439)
Q Consensus 204 ~~is~a~~ad~~~v~a~~-~~--------~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~- 273 (439)
.||||++.||+++|.+++ ++ ..++++|+||.+.|||++.+.++++|+++. +++++||||+||.+++||.
T Consensus 236 ~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~ 314 (774)
T PRK13026 236 RYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGP 314 (774)
T ss_pred EeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCc
Confidence 999999999999887764 22 247899999999999999999999999974 6899999999999999986
Q ss_pred ---CCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHH---HHHHHHHHHHH
Q 013626 274 ---VNSFQDTSKVLAVSR-VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLG---NIQAMILVGWR 346 (439)
Q Consensus 274 ---~~~~~~~~~~~~~~r-~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~---~~~a~~~~~~~ 346 (439)
+.++...+..++.+| +.+++.++|+++.+++.+++|+++|+|||+||++||.||++|++|.+ .++++|.++++
T Consensus 315 ~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~ 394 (774)
T PRK13026 315 DYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTT 394 (774)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999 89999999999999999999999999999999999999999999999 68899998887
Q ss_pred HHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCc--CcHHHHhhccCCcccccchHHHHHHHH
Q 013626 347 LCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSD--FLVAKAFCDIEPIYTYEGTYDINTLVT 418 (439)
Q Consensus 347 ~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~--~~~~r~~rD~~~~~~~~G~~~~~~~~i 418 (439)
++ |.+......++++|+++++.+.+++++++|+|||.||+++ ++++|+|||++...+++|++++++..+
T Consensus 395 a~---D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ 465 (774)
T PRK13026 395 GL---DLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLM 465 (774)
T ss_pred HH---HCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 64 5555445678999999999999999999999999999998 999999999999999999999999753
No 25
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.6e-61 Score=484.35 Aligned_cols=376 Identities=35% Similarity=0.512 Sum_probs=342.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHH---hcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWE---KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
+.+++++.++++.+++|+.+.+.|...+.++ .+.+|+++++++.+.|++++.+ ++|||.|.++.+...+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~ 82 (393)
T COG1960 3 FDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARA 82 (393)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhh
Confidence 3445888999999999999988888777775 6889999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhH---HHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcc-eEEEEeCCEEEEEeEEE
Q 013626 129 DASCSTFILVHSSL---AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALN-TTATKVEGGWILEGQKR 204 (439)
Q Consensus 129 d~s~~~~~~~~~~~---~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~-t~A~~~~~g~~LnG~K~ 204 (439)
|++.+..+.++... ....+..+|+++||++|||++.+|+.++|+++|||.+|||+..+. |++++.+|+|+|||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~ 162 (393)
T COG1960 83 DAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKI 162 (393)
T ss_pred CcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEE
Confidence 98877655554422 223567799999999999999999999999999999999999987 77777666699999999
Q ss_pred eecCCCCCCEEEEEEEecCC----CCeEEEEEeCC-CCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChH
Q 013626 205 WIGNSTFADVLVIFARNTTT----NQINGYLVKKD-APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQ 278 (439)
Q Consensus 205 ~is~a~~ad~~~v~a~~~~~----~~~~~flV~~~-~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~ 278 (439)
||||++.|||++|+|+++++ .++++|+||++ .||+++.+.|++.|+|+++++++.|+||+||.+++++.. .++.
T Consensus 163 ~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~ 242 (393)
T COG1960 163 WISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFK 242 (393)
T ss_pred EEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHH
Confidence 99999999999999999753 47999999999 599999999864499999999999999999999999865 6889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 013626 279 DTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP 358 (439)
Q Consensus 279 ~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~ 358 (439)
.....++.+|+.+++.++|+++++++.+++|+++|++||+|++++|.+|++|++|.+++++++++++++++..+.+....
T Consensus 243 ~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~ 322 (393)
T COG1960 243 IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAG 322 (393)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888775444
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCCC
Q 013626 359 GHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASF 428 (439)
Q Consensus 359 ~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~~ 428 (439)
..++++|.++++.+.++++.++|+|||+||+.+++++|+|||++...+++|++++++..+++.+++.+..
T Consensus 323 ~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~~~ 392 (393)
T COG1960 323 AEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLPAG 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999998643
No 26
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=9.8e-60 Score=472.64 Aligned_cols=355 Identities=23% Similarity=0.287 Sum_probs=318.8
Q ss_pred HHHHHHHHHhhccccHHHHHHhcC--------CC---HHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCC
Q 013626 63 RMKVRECMEKEIAPIMAEYWEKAE--------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (439)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (439)
++.+++|+.+++.|.+.++|+... || .++|++|+++||+++.+ ++|||.|.++.+...++++++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678999999999998888877654 99 67899999999999987 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe-CCEEEEEeEEEeecCC
Q 013626 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNS 209 (439)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~LnG~K~~is~a 209 (439)
++++.+.+|. +...+..+|+++||++|+|++.+|+.++|+++|||++|||+..+.|+++++ +|||+|||+|.|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9888776654 345678889999999999999999999999999999999999999999998 5789999999999999
Q ss_pred CCC----CEEEEEEEecCC----CCeEEEEEeCCC-----CCeeeeccccccccccccceeEEEcceecCCCCCCCCC-C
Q 013626 210 TFA----DVLVIFARNTTT----NQINGYLVKKDA-----PGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-N 275 (439)
Q Consensus 210 ~~a----d~~~v~a~~~~~----~~~~~flV~~~~-----pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~ 275 (439)
.+| ++++|+++++++ .++++|+||++. |||++.+.|+++|++++++++|.|+||+|| +|+.. .
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 886 578899987531 368899999987 899999999999999999999999999999 67654 5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc--------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q 013626 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP--------LAAFQINQQKLVQMLGNIQAMILVGWRL 347 (439)
Q Consensus 276 ~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~p--------i~~~~~vq~~la~~~~~~~a~~~~~~~~ 347 (439)
++......++..|+.+++.++|+++++++.+++|+++|++||+| +.++|.+|++|++|.+++++++++++++
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~a 316 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYT 316 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888999999999999999999999999999999999999 7889999999999999999999999999
Q ss_pred HHHHHcCCCC--------------hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHH
Q 013626 348 CKLYEKGAMT--------------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDI 413 (439)
Q Consensus 348 ~~~~~~~~~~--------------~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~ 413 (439)
++.++.+... ....+++|+++++.+.++++.++++|||.||.++++++|+|||+++..+++|++++
T Consensus 317 a~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~ 396 (407)
T cd01153 317 ATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGI 396 (407)
T ss_pred HHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHH
Confidence 9988765311 22346899999999999999999999999999999999999999999999999998
Q ss_pred HHH-HHHHHH
Q 013626 414 NTL-VTGREV 422 (439)
Q Consensus 414 ~~~-~i~r~~ 422 (439)
+++ .++|.+
T Consensus 397 ~~~~~~~~~~ 406 (407)
T cd01153 397 QALDLIGRKI 406 (407)
T ss_pred HHHHHhhccc
Confidence 886 556543
No 27
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.5e-59 Score=467.64 Aligned_cols=360 Identities=27% Similarity=0.364 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHH-----HHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCC
Q 013626 57 SEEQAVRMKVRECMEKEIAPIMAEY-----WEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (439)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (439)
+||+++++.+++|+++++.|...+. ++.+.+|.++++.|++.||+++.+ ++|||.|.++.+.+.+++++++.|.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 3678999999999999988866432 345678999999999999999987 9999999999999999999999999
Q ss_pred chhHH-HHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCC
Q 013626 131 SCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (439)
Q Consensus 131 s~~~~-~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a 209 (439)
++++. +.++ .+...+..+|+++|+++||+++.+|+.++++++|||++|||...+.|++++++|||+|||+|.||||+
T Consensus 81 ~~~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~ 158 (380)
T cd01152 81 PVPFNQIGID--LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGA 158 (380)
T ss_pred CcccchhhHH--HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCc
Confidence 88865 3332 34457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHH
Q 013626 210 TFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVL 284 (439)
Q Consensus 210 ~~ad~~~v~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~ 284 (439)
..+|+++|+++++++ +++.+|+||++.||+++.+.|+++| +++++++.|+||+||++++|+.. .++......+
T Consensus 159 ~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l 236 (380)
T cd01152 159 HYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTL 236 (380)
T ss_pred cccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHH
Confidence 999999999997542 3688999999999999999998888 67889999999999999999875 5666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhH
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 364 (439)
...|+.+++ ++.++++.+++|+++|.+||+||.++|.+|++|++|.+++++++++++++++.++++......++++
T Consensus 237 ~~~r~~~~~----~~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~a 312 (380)
T cd01152 237 NFERVSIGG----SAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIA 312 (380)
T ss_pred Hhcccccch----hhhHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 777777654 4555556777899999999999999999999999999999999999999999998876545568899
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCc--------CcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 365 KSWITARARETVALGRELLGGNGILSD--------FLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~--------~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
|+++++.+.++++.+++++||.||.++ ++++|+|||++...+++|++++++..+++.++|
T Consensus 313 K~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 313 KLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988 799999999999999999999999999999886
No 28
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=4.8e-59 Score=503.01 Aligned_cols=373 Identities=18% Similarity=0.213 Sum_probs=330.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhc-------CCC-HHHHHHHH-hccccCCcc-cc---------------
Q 013626 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-------EFP-FHVIPKLG-ALRVAGGTI-KG--------------- 107 (439)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~-~~Gl~~~~~-~~--------------- 107 (439)
+.+++++.++++++++|+.+++.|...++++.. .+| .+.|+++. ++||+++.+ ++
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 568999999999999999999888776665422 377 68888886 999999987 53
Q ss_pred ---------CCCCCCCHHHHHHHHHHHhccCCchhHH-HHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCC
Q 013626 108 ---------YGCPGHSVTGAAIAIAEIARVDASCSTF-ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEP 177 (439)
Q Consensus 108 ---------~GG~g~~~~~~~~v~e~la~~d~s~~~~-~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp 177 (439)
|||.|+++.+...++|++++++.+...+ ...+....+..|..+|+++||++||+++++|+.++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999986442211 112222334578899999999999999999999999999999
Q ss_pred C-CCCCcCCcceEEEEeCCEEEEEeEEEeecCC--CCCCEEEEEEEecCC----CCeEEEEEeCCCCCeeeecccccccc
Q 013626 178 A-YGSDASALNTTATKVEGGWILEGQKRWIGNS--TFADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGL 250 (439)
Q Consensus 178 ~-~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a--~~ad~~~v~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Gl 250 (439)
+ +|||+.++.|+|++++|||+|||+|+||||+ +.||+++|+++++++ +++++|+||.+.|||++.+.|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999999 579999999997532 46789999999999999999999999
Q ss_pred ccc--cceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHH
Q 013626 251 RIV--QNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQ 327 (439)
Q Consensus 251 rg~--~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq 327 (439)
+++ ++++|.||||+||++++|+.. .++......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq 719 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFL 719 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHH
Confidence 984 588999999999999999765 57777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-C-CChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcc
Q 013626 328 QKLVQMLGNIQAMILVGWRLCKLYEKG-A-MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIY 405 (439)
Q Consensus 328 ~~la~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~ 405 (439)
++|++|.++++++|++++++++.++.. . .....++++|.++++.+.++++.|+|+|||+||+.+++++|+|||+++.+
T Consensus 720 ~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~ 799 (822)
T PLN02876 720 SDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLR 799 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcc
Confidence 999999999999999999999998873 2 23456889999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCC
Q 013626 406 TYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 406 ~~~G~~~~~~~~i~r~~lg~ 425 (439)
+++|++++++..+++.+++.
T Consensus 800 i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 800 IADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred cccChHHHHHHHHHHHHHHh
Confidence 99999999999999999764
No 29
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-58 Score=480.36 Aligned_cols=367 Identities=18% Similarity=0.202 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHhcCC---------C---HHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHH
Q 013626 57 SEEQAVRMKVRECMEKEIAPIMAEYWEKAEF---------P---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (439)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (439)
+.-.++++.+++|+++++.|...+.|+++.+ | .+.|+++.+.||+++.+ ++|||.|++......+.|
T Consensus 58 ~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E 137 (622)
T PTZ00456 58 ELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRE 137 (622)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHH
Confidence 3457889999999999999988888876543 5 58999999999999987 999999999875555555
Q ss_pred HHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCC-EEEEEeE
Q 013626 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG-GWILEGQ 202 (439)
Q Consensus 124 ~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~-g~~LnG~ 202 (439)
.++..+++++.....+. .+...|..+|+++||++|||++.+|++++++++|||++|||+..+.|+|++++| +|+|||+
T Consensus 138 ~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~ 216 (622)
T PTZ00456 138 LMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGT 216 (622)
T ss_pred HHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeE
Confidence 56677776654433332 234678999999999999999999999999999999999999999999999887 5999999
Q ss_pred EEeecCCCCC----CEEEEEEEecC----CCCeEEEEEeCCC----------CCeeeeccccccccccccceeEEEccee
Q 013626 203 KRWIGNSTFA----DVLVIFARNTT----TNQINGYLVKKDA----------PGLTVTKIENKIGLRIVQNGDILLKKVF 264 (439)
Q Consensus 203 K~~is~a~~a----d~~~v~a~~~~----~~~~~~flV~~~~----------pGv~v~~~~~~~Glrg~~~~~v~f~~v~ 264 (439)
|.|||++.++ ++++|+||+++ .+++++|+||++. +||++.++++++|++++++++|.|||+
T Consensus 217 K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~- 295 (622)
T PTZ00456 217 KIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS- 295 (622)
T ss_pred EEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh-
Confidence 9999999863 68899999864 2579999999864 478888889999999999999999994
Q ss_pred cCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------------CcccccchhHHHHHH
Q 013626 265 VPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF------------GAPLAAFQINQQKLV 331 (439)
Q Consensus 265 Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~f------------g~pi~~~~~vq~~la 331 (439)
.+++||.. .++......++.+|+.+++.++|+++++++.+++|+++|+|| ++||+++|.||++|+
T Consensus 296 --~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~ 373 (622)
T PTZ00456 296 --VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNIL 373 (622)
T ss_pred --hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHH
Confidence 67899876 578888899999999999999999999999999999999984 788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--C-----------hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHh
Q 013626 332 QMLGNIQAMILVGWRLCKLYEKGAM--T-----------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAF 398 (439)
Q Consensus 332 ~~~~~~~a~~~~~~~~~~~~~~~~~--~-----------~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~ 398 (439)
+|.+.++++|+++++++..+|.+.. . ...++++|+++++.+.++++.++|+|||+||+++++++|+|
T Consensus 374 ~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~ 453 (622)
T PTZ00456 374 FAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQIL 453 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHH
Confidence 9999999999999999998886421 1 12467999999999999999999999999999999999999
Q ss_pred hccCCcccccchHHHHH-HHHHHHHhCCCC
Q 013626 399 CDIEPIYTYEGTYDINT-LVTGREVTGIAS 427 (439)
Q Consensus 399 rD~~~~~~~~G~~~~~~-~~i~r~~lg~~~ 427 (439)
||++...+|+|+++++. ..++|.++|.+.
T Consensus 454 RDari~~i~eGt~~iq~~dli~rkllg~~~ 483 (622)
T PTZ00456 454 RDARIGTLYEGTTGIQALDFIGRKVLSLKG 483 (622)
T ss_pred HHhhcccccCChHHHHHHHHHHHHhhCCCC
Confidence 99999999999999997 599999987654
No 30
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-59 Score=451.63 Aligned_cols=376 Identities=26% Similarity=0.366 Sum_probs=341.6
Q ss_pred CCccccccCCCHHHHHHHHHHHHHHHhhccc--cHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHH
Q 013626 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAP--IMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAI 122 (439)
Q Consensus 46 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~ 122 (439)
.|.+.+.+.+++|+.++.+.+-.-++..+.. .....|+....++..++.|+++|+|++.+ ++|||.|+...++..+.
T Consensus 67 k~v~~yPev~~~e~~~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~ 146 (634)
T KOG0137|consen 67 KDVFPYPEVITSEQKELLEQFVLPLERFFEEVNDSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLF 146 (634)
T ss_pred hhhcCCcccCcHHHHHHHHhhhhhHHHhhhccchhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHh
Confidence 3567788889999877665444333332221 23456777899999999999999999988 99999999999999999
Q ss_pred HHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeC--CEEEEE
Q 013626 123 AEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE 200 (439)
Q Consensus 123 e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~--~g~~Ln 200 (439)
|.++.+|.++.+.+..|..++.-.|..+|+++||++|||++++|+.+++|++|||..|||+.+..|+|+... +.|+||
T Consensus 147 e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN 226 (634)
T KOG0137|consen 147 EIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN 226 (634)
T ss_pred hccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEc
Confidence 999998999888888887677778999999999999999999999999999999999999999999999844 559999
Q ss_pred eEEEeecCCCCCCEEEEEEEecCC-------CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCC
Q 013626 201 GQKRWIGNSTFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (439)
Q Consensus 201 G~K~~is~a~~ad~~~v~a~~~~~-------~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~ 273 (439)
|.|.||+|+..||+++|+|+++.+ +++++|||+++..|++-.+...++|++|+.+++|+|++|.||.+++||.
T Consensus 227 G~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~ 306 (634)
T KOG0137|consen 227 GSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGK 306 (634)
T ss_pred CeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCC
Confidence 999999999999999999998732 5799999999999999999999999999999999999999999999999
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 274 V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE 352 (439)
Q Consensus 274 ~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~ 352 (439)
+ +|++..+.+++.+|+..++..+|.++++++++.+|+..|.|||+++.+|..+|.++++|...++++.+++|..+..+|
T Consensus 307 ~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D 386 (634)
T KOG0137|consen 307 PGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMD 386 (634)
T ss_pred CCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7 799999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cC--CCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHH
Q 013626 353 KG--AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGRE 421 (439)
Q Consensus 353 ~~--~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~ 421 (439)
+. .....++++.|+++++.+..++++++|++||+||+.+++++|.+||++.+.+++|++++.+..|+..
T Consensus 387 ~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAlt 457 (634)
T KOG0137|consen 387 EVGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALT 457 (634)
T ss_pred cccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHH
Confidence 83 3445678999999999999999999999999999999999999999999999999999999888754
No 31
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.5e-57 Score=453.09 Aligned_cols=353 Identities=17% Similarity=0.211 Sum_probs=309.5
Q ss_pred HHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHH
Q 013626 65 KVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLA 143 (439)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~ 143 (439)
+++++.+. +.+.+.++|+.+.+|.+.|+.|++.||+++.+ ++|||.|+++.+...+++++++.|+++++.+.+|...
T Consensus 2 ~~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~- 79 (377)
T cd01163 2 RARPLAAR-IAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGF- 79 (377)
T ss_pred hHHHHHHH-HhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 35666665 77888889999999999999999999999987 9999999999999999999999999999887777643
Q ss_pred HHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEEEEEecC
Q 013626 144 MLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT 223 (439)
Q Consensus 144 ~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~~ 223 (439)
...+..+|+++||++|++++.+|++++ .++|||++|+ ...+.+++++++|||+|||+|.||||+..|||++|++++++
T Consensus 80 ~~~l~~~g~~~~~~~~l~~~~~g~~~~-~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~ 157 (377)
T cd01163 80 VEALLLAGPEQFRKRWFGRVLNGWIFG-NAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE 157 (377)
T ss_pred HHHHHhcCcHHHHHHHHHHHhCCCeEE-EeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC
Confidence 467888999999999999999999665 6999999876 66777788888999999999999999999999999999754
Q ss_pred CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 224 TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-SFQDTSKVLAVSRVMVAWQPIGISMGV 302 (439)
Q Consensus 224 ~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r~~~aa~~lG~a~~a 302 (439)
+++.+|+||.+.|||++.+.|+++||+++++++|+|+||+||++++++... ++. ....+...++.+++.++|+++++
T Consensus 158 -~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~a 235 (377)
T cd01163 158 -GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAA 235 (377)
T ss_pred -CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999998753 332 23345678899999999999999
Q ss_pred HHHHHHHHhhhh-hcCc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ChhhhhhHH
Q 013626 303 YDMCHRYLKERK-QFGA----PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM------------TPGHASLGK 365 (439)
Q Consensus 303 l~~a~~y~~~R~-~fg~----pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~aK 365 (439)
++.+++|+++|+ +||+ ++.++|.+|++|++|.+++++++++++++++.++++.. ....++++|
T Consensus 236 l~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK 315 (377)
T cd01163 236 LDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAK 315 (377)
T ss_pred HHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 999999999995 7876 47899999999999999999999999999998876411 123467899
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 366 SWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 366 ~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
+++++.+.++++.++|+|||+||+++++++|+|||+++..+|.... ....++|.+++.
T Consensus 316 ~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~ 373 (377)
T cd01163 316 VVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALN 373 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcC
Confidence 9999999999999999999999999999999999999999888764 445566776654
No 32
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.9e-55 Score=442.12 Aligned_cols=347 Identities=21% Similarity=0.280 Sum_probs=302.8
Q ss_pred HHHHHhhccccHHHHHHhcC------CC---HHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHH
Q 013626 67 RECMEKEIAPIMAEYWEKAE------FP---FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFI 136 (439)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~ 136 (439)
.++++.+ .|...++|+.+. +| .++++.+.+.||+++ + .++||.| ......+.+.++..+.+.+..+
T Consensus 38 ~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~ 113 (418)
T cd01154 38 ARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPL 113 (418)
T ss_pred HHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcH
Confidence 3455554 777888888777 78 778999999999998 5 5666554 3344455666776666555555
Q ss_pred HHHhhHHHHHHhhcCCHHHHhhhhhhhhcCc----ceeEEEecCCCCCCCcCCcceEEEEe-CCEEEEEeEEEeecCCCC
Q 013626 137 LVHSSLAMLTIALCGSEEQKQKYLPSLAQLN----TIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTF 211 (439)
Q Consensus 137 ~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~----~~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~LnG~K~~is~a~~ 211 (439)
.+|. .+...|..+|+++|| +|||++++|+ .++|+++|||++|||+..+.|+|+++ +|+|+|||+|+|+||+ .
T Consensus 114 ~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~ 190 (418)
T cd01154 114 TMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-L 190 (418)
T ss_pred HHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-c
Confidence 5555 366788999998875 6999999997 89999999999999999999999999 8999999999999999 9
Q ss_pred CCEEEEEEEecCC----CCeEEEEEeCCCC-----CeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHH
Q 013626 212 ADVLVIFARNTTT----NQINGYLVKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (439)
Q Consensus 212 ad~~~v~a~~~~~----~~~~~flV~~~~p-----Gv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (439)
||+++|+|+++++ .++++|+||++.| ||++.+.|+++|+|++++++|.|+||+ ++++|.. .++....
T Consensus 191 Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~ 267 (418)
T cd01154 191 ADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYIL 267 (418)
T ss_pred cCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHH
Confidence 9999999998642 5799999999875 999999999999999999999999983 6788875 6888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----
Q 013626 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT---- 357 (439)
Q Consensus 282 ~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~---- 357 (439)
..++.+|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.+++++++++++++++.++.+...
T Consensus 268 ~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~ 347 (418)
T cd01154 268 EMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVE 347 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988864211
Q ss_pred ----hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHh
Q 013626 358 ----PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 423 (439)
Q Consensus 358 ----~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~l 423 (439)
...++++|+++++.+.++++.|+|++||.||..+++++|+|||+++..+++|++++++..+.|.+.
T Consensus 348 ~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 348 AHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 124577999999999999999999999999999999999999999999999999999999999763
No 33
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.3e-53 Score=423.68 Aligned_cols=342 Identities=17% Similarity=0.156 Sum_probs=296.3
Q ss_pred HHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHHH
Q 013626 66 VRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAM 144 (439)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~ 144 (439)
++++++. +.+.+.+.|+++.||.++|+.|++.||+++.+ ++|||.|+++.+...+++++++.|+|+++++..+. ...
T Consensus 3 ~~~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~ 80 (370)
T cd01159 3 AEDLAPL-IRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THS 80 (370)
T ss_pred HHHHHHH-HHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHH
Confidence 4556665 78888899999999999999999999999987 99999999999999999999999999887655543 344
Q ss_pred HHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEEEEEecC-
Q 013626 145 LTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTT- 223 (439)
Q Consensus 145 ~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~~- 223 (439)
..+..+++++|++.|++.. .+. .+ | ...+.|+|++++|||+|||+|.||||+..+||++|.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~--~~--------g--~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~ 147 (370)
T cd01159 81 RMLAAFPPEAQEEVWGDGP-DTL--LA--------G--SYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDD 147 (370)
T ss_pred HHHHhCCHHHHHHHhCCCC-Cce--EE--------e--eecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCC
Confidence 5677889999999888742 111 11 1 13456799999999999999999999999999999999753
Q ss_pred --CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCC-------ChH---HHHHHHHHHHHHH
Q 013626 224 --TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN-------SFQ---DTSKVLAVSRVMV 291 (439)
Q Consensus 224 --~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~-------~~~---~~~~~~~~~r~~~ 291 (439)
..++++|+||++ ||++.+.|+++||+++++++|+|+||+||++++|+..+ ++. ........+++.+
T Consensus 148 ~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 225 (370)
T cd01159 148 DGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSF 225 (370)
T ss_pred CCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHH
Confidence 246899999987 99999999999999999999999999999999997432 211 2233556788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----C---hhh
Q 013626 292 AWQPIGISMGVYDMCHRYLKERKQF---GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-----T---PGH 360 (439)
Q Consensus 292 aa~~lG~a~~al~~a~~y~~~R~~f---g~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~-----~---~~~ 360 (439)
++.++|+++++++.+++|+++|.+| |+||+++|.+|++|++|.+++++++++++++++.++++.. . ...
T Consensus 226 aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~ 305 (370)
T cd01159 226 AAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERAR 305 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999999999999999999997 7889999999999999999999999999999998886421 1 224
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchH-HHHHHHHHHHHhC
Q 013626 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTY-DINTLVTGREVTG 424 (439)
Q Consensus 361 ~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~-~~~~~~i~r~~lg 424 (439)
++++|+++++.+.++++.+++++||+||.++++++|+|||+++..+|+|++ ++++..++|.+||
T Consensus 306 ~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 306 IRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 678999999999999999999999999999999999999999999999999 9999999999986
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-52 Score=423.29 Aligned_cols=326 Identities=20% Similarity=0.225 Sum_probs=277.6
Q ss_pred HHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHH-hccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCc
Q 013626 90 HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI-ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (439)
Q Consensus 90 ~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l-a~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~ 167 (439)
++++.+.+.||.++.. +++| . ...-...+.+-+ +..++.....+.+ +.+...+..+++++||++|||++.+|+
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~~~l~~~~~~g~~cp~~m--T~~a~~~l~~~~~e~~~~~lp~l~sg~ 164 (538)
T PRK11561 90 LLMQGLCANRVHNLAWEEDAR-S--GAFVARAARFMLHAQVEAGTLCPITM--TFAATPLLLQMLPAPFQDWLTPLLSDR 164 (538)
T ss_pred HHHHHHHHcCCccCCCCCccC-c--hHHHHHHHHHHHHhhhhHHhhchHHH--HHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 4556667789988766 5665 2 222222222333 3333322222222 234456667789999999999999997
Q ss_pred -------------ceeEEEecCCCCCCCcCCcceEEEE-eCCEEEEEeEEEeecCCCCCCEEEEEEEecCCCCeEEEEEe
Q 013626 168 -------------TIACWALTEPAYGSDASALNTTATK-VEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVK 233 (439)
Q Consensus 168 -------------~~~~~a~tEp~~Gsd~~~~~t~A~~-~~~g~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~ 233 (439)
.++++++|||++|||+..+.|+|++ ++|+|+|||+|+||| ++.||+++|+||++ +++++|+||
T Consensus 165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~--~Gls~FlVp 241 (538)
T PRK11561 165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK--GGLSCFFVP 241 (538)
T ss_pred cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC--CceEEEEEE
Confidence 4669999999999999999999999 467899999999999 58899999999996 689999999
Q ss_pred CCCC-----CeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 234 KDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCH 307 (439)
Q Consensus 234 ~~~p-----Gv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~ 307 (439)
++.| ||++.+.++|+|+|++++++|.|+||. +++||.. .|+......++..|+.+++.++|+++++++.++
T Consensus 242 ~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~ 318 (538)
T PRK11561 242 RFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAI 318 (538)
T ss_pred CCCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988 799999999999999999999999993 6788876 688888899999999999999999999999999
Q ss_pred HHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh------hhhhhHHHHHHHHHHHHHHHHHH
Q 013626 308 RYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP------GHASLGKSWITARARETVALGRE 381 (439)
Q Consensus 308 ~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~~~~aK~~~~~~a~~~~~~a~~ 381 (439)
+|+++|++||+||+++|.+|++|++|.+++++++++++++++.+|.+.... ...+++|.++++.+.+++++|+|
T Consensus 319 ~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amq 398 (538)
T PRK11561 319 YHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAME 398 (538)
T ss_pred HHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764221 23457999999999999999999
Q ss_pred HhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCC
Q 013626 382 LLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIA 426 (439)
Q Consensus 382 ~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~ 426 (439)
+|||+||+++++++|+|||+++..+++|+++++.+.+.|.+.+.|
T Consensus 399 v~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~~~ 443 (538)
T PRK11561 399 VLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQP 443 (538)
T ss_pred hcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999999998753
No 35
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.8e-53 Score=438.66 Aligned_cols=297 Identities=23% Similarity=0.308 Sum_probs=267.0
Q ss_pred CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEE-----e
Q 013626 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----G 201 (439)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~Ln-----G 201 (439)
+++....+.+|.++....|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 34444445677777777899999999999999999999999999999999999999999999995 6889998 9
Q ss_pred EEEeecC-CCCCCEEEEEEEecC---CCCeEEEEEeCC-------CCCeeeeccccccccccccceeEEEcceecCCCCC
Q 013626 202 QKRWIGN-STFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDR 270 (439)
Q Consensus 202 ~K~~is~-a~~ad~~~v~a~~~~---~~~~~~flV~~~-------~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~ 270 (439)
+|+||+| +..||+++|+|++.. +.|+++|+||.. .|||++.++++++|+++++++.+.||||+||++++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 678999999999853 258999999942 49999999999999999999999999999999999
Q ss_pred CCC------CC-----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc------ccccchhHHHHHHH
Q 013626 271 LPG------VN-----S-FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA------PLAAFQINQQKLVQ 332 (439)
Q Consensus 271 l~~------~~-----~-~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~------pi~~~~~vq~~la~ 332 (439)
|+. .. + +......+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||.+|++|++
T Consensus 248 Lg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa~ 327 (646)
T PTZ00460 248 LARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLLP 327 (646)
T ss_pred CCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHHH
Confidence 975 11 2 566677888999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC------CC------ChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhc
Q 013626 333 MLGNIQAMILVGWRLCKLYEKG------AM------TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCD 400 (439)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~------~~------~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD 400 (439)
|.+++++++.+++++++.+++. .. .+..++++|+++++.+.+++++|+|+|||+||+.+++++++|||
T Consensus 328 ~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rd 407 (646)
T PTZ00460 328 LLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFD 407 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHH
Confidence 9999999999999999888753 11 13467899999999999999999999999999999999999999
Q ss_pred cCCcccccchHHHHHHHHHHHHhCC
Q 013626 401 IEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 401 ~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
++...+++|++++++.+++|.+++.
T Consensus 408 a~~~~t~eG~n~vl~~~iar~ll~~ 432 (646)
T PTZ00460 408 MSPNITLEGENQIMYLQLARYLLKQ 432 (646)
T ss_pred hccceeecCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 36
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=7.4e-53 Score=438.49 Aligned_cols=312 Identities=25% Similarity=0.293 Sum_probs=279.5
Q ss_pred CHHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe
Q 013626 114 SVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV 193 (439)
Q Consensus 114 ~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~ 193 (439)
++.+...+.|++++.|++++..+.+|.++++..|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67888899999999999887777888888888999999999999999999999999999999999999999999999998
Q ss_pred C--CEEEEE-----eEEEeecCCCC-CCEEEEEEEecC---CCCeEEEEEeCC-------CCCeeeeccccccccccccc
Q 013626 194 E--GGWILE-----GQKRWIGNSTF-ADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQN 255 (439)
Q Consensus 194 ~--~g~~Ln-----G~K~~is~a~~-ad~~~v~a~~~~---~~~~~~flV~~~-------~pGv~v~~~~~~~Glrg~~~ 255 (439)
+ |+|+|| |+|+||+|++. |++++|+|++.. +.|+++|+||.. .|||++.++++++|++++++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 899999 99999999864 999999999742 358999999963 39999999999999999999
Q ss_pred eeEEEcceecCCCCCCCC----------------C-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc
Q 013626 256 GDILLKKVFVPDEDRLPG----------------V-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA 318 (439)
Q Consensus 256 ~~v~f~~v~Vp~~~~l~~----------------~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~ 318 (439)
+.+.||||+||.+++|+. . .++......+..+|+.+++.++|.++++++.+++|++.|+|||+
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999975 1 24456667888999999999999999999999999999999999
Q ss_pred c-------cccchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCC-----CChhhhhhHHHHHHHHHHHHHHHH
Q 013626 319 P-------LAAFQINQQKLVQMLGNIQAMILVGWRLCK-------LYEKGA-----MTPGHASLGKSWITARARETVALG 379 (439)
Q Consensus 319 p-------i~~~~~vq~~la~~~~~~~a~~~~~~~~~~-------~~~~~~-----~~~~~~~~aK~~~~~~a~~~~~~a 379 (439)
| |++||.+|++|++|.+..++++.....+.. ..+++. ..+..++++|+++++.+.+++++|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999988755544332 233332 224567899999999999999999
Q ss_pred HHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 380 RELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 380 ~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
+|+|||+||+.++++++++||++...++||+++++...++|.+++.
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~ 445 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKK 445 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998764
No 37
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.4e-51 Score=402.73 Aligned_cols=320 Identities=34% Similarity=0.518 Sum_probs=290.5
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCccccCCCCCCCHHHHHHHHHHHhccCCchhHHHH
Q 013626 58 EEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFIL 137 (439)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~ 137 (439)
++.++++.+++|+.+++.+.....+. ++...|+.|.+.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~------------------------------------ 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPEEPWELLAELGLL------------------------------------ 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCCCCHHHHHHHHHH------------------------------------
Confidence 57889999999999988888775554 344556666677776
Q ss_pred HHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEE
Q 013626 138 VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (439)
Q Consensus 138 ~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v 217 (439)
+++.+|..+|+++||++||+.+.+|+.++++++|||++|||...+.+++++++|||+|||+|.|+||+..|||++|
T Consensus 43 ----~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv 118 (327)
T cd00567 43 ----LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV 118 (327)
T ss_pred ----hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE
Confidence 2345677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHH
Q 013626 218 FARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVA 292 (439)
Q Consensus 218 ~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~a 292 (439)
+++++++ +++.+|+||++.|||++.+.|+++|+++++++.+.|+||+||++++++.. .++......+...++.++
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~a 198 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLA 198 (327)
T ss_pred EEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHH
Confidence 9998642 46889999999999999999999999999999999999999999999875 456667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhhhHHHHHHHH
Q 013626 293 WQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLGKSWITAR 371 (439)
Q Consensus 293 a~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~aK~~~~~~ 371 (439)
+.++|+++++++.+++|+++|.+||+|+.++|.+|++|++|.+++++++++++.+++.++++.. .....+++|.++++.
T Consensus 199 a~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~ 278 (327)
T cd00567 199 AVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEA 278 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 455678999999999
Q ss_pred HHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHH
Q 013626 372 ARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420 (439)
Q Consensus 372 a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r 420 (439)
+.++++.++++|||+||..+++++|+|||+++..+++|++++++..+++
T Consensus 279 a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 279 AREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999887753
No 38
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.2e-49 Score=414.46 Aligned_cols=289 Identities=27% Similarity=0.366 Sum_probs=256.6
Q ss_pred HHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEE-----eEEEeecC
Q 013626 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE-----GQKRWIGN 208 (439)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~Ln-----G~K~~is~ 208 (439)
+.+|.++.+..|..+||++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 4567667777899999999999999999999999999999999999999999999998 6889998 99999999
Q ss_pred C-CCCCEEEEEEEecC---CCCeEEEEEeCC-------CCCeeeeccccccc---cccccceeEEEcceecCCCCCCCCC
Q 013626 209 S-TFADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIG---LRIVQNGDILLKKVFVPDEDRLPGV 274 (439)
Q Consensus 209 a-~~ad~~~v~a~~~~---~~~~~~flV~~~-------~pGv~v~~~~~~~G---lrg~~~~~v~f~~v~Vp~~~~l~~~ 274 (439)
+ ..||+++|+|++.. +.|+++|+||.+ .|||++.++++|+| +++++++.|.||||+||.+++|+..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 7 68999999999742 358999999975 89999999999999 6679999999999999999999752
Q ss_pred -----CCh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccc-------cchhHHHHHHHHH
Q 013626 275 -----NSF--------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLA-------AFQINQQKLVQML 334 (439)
Q Consensus 275 -----~~~--------~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~-------~~~~vq~~la~~~ 334 (439)
++. ......+..+|+.+++.++|++++|++++++|+++|+|||+|++ +||.+|++|+++.
T Consensus 259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~l 338 (664)
T PLN02443 259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLL 338 (664)
T ss_pred cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHH
Confidence 111 23346778889999999999999999999999999999999987 4555599999999
Q ss_pred HHHHHHHHHHHHHHHHHHc-------CCC-----ChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccC
Q 013626 335 GNIQAMILVGWRLCKLYEK-------GAM-----TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402 (439)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~~-------~~~-----~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~ 402 (439)
+.+++++.+.+++++.+++ +.. .+..++++|+++++.+.+++++|+|+|||+||+.++++++++||++
T Consensus 339 a~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~ 418 (664)
T PLN02443 339 ASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYV 418 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhh
Confidence 9999999999999887764 111 1224789999999999999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHhC
Q 013626 403 PIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 403 ~~~~~~G~~~~~~~~i~r~~lg 424 (439)
...++||++++++.+++|.+++
T Consensus 419 ~~~t~EGdn~Vl~~~iar~ll~ 440 (664)
T PLN02443 419 PACTYEGDNVVLLLQVARFLMK 440 (664)
T ss_pred cceeecCcHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 39
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-47 Score=385.66 Aligned_cols=287 Identities=21% Similarity=0.250 Sum_probs=258.9
Q ss_pred HHHhc-cccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeE
Q 013626 94 KLGAL-RVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIAC 171 (439)
Q Consensus 94 ~l~~~-Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~ 171 (439)
.++++ ||+++.+ ++|||.|+++.++..++|++++.+.+++..+..|..++...+..+|+++||++|||++++|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 47799 9999987 999999999999999999999988777655556765666778889999999999999999999999
Q ss_pred EEecCCCCCCCcCCcceEEEEe-CCEEEEEeEEEeecCCCCCCEEEEEEEecC----------CCCeEEEEEeCCCCCee
Q 013626 172 WALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTT----------TNQINGYLVKKDAPGLT 240 (439)
Q Consensus 172 ~a~tEp~~Gsd~~~~~t~A~~~-~~g~~LnG~K~~is~a~~ad~~~v~a~~~~----------~~~~~~flV~~~~pGv~ 240 (439)
++++| ++|||+..+.|+|+++ +|+|+|||+|.|+ |+..||+++|+|++++ .+++++|+||.+.|||+
T Consensus 138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt 215 (520)
T PTZ00457 138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215 (520)
T ss_pred EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence 99988 8999999999999986 5589999999976 8999999999999742 13689999999999999
Q ss_pred eeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcc
Q 013626 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAP 319 (439)
Q Consensus 241 v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~p 319 (439)
+.. ++|+|||| |.+++||.. ++++.....++.+|+.+++.++|+++++++.+++|++
T Consensus 216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-------- 273 (520)
T PTZ00457 216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-------- 273 (520)
T ss_pred Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 863 69999997 999999876 7888889999999999999999999999999999986
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChhhhhhHHHHHH---HHHHHHHHHHHHHhCcccccCcCcHH
Q 013626 320 LAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA-MTPGHASLGKSWIT---ARARETVALGRELLGGNGILSDFLVA 395 (439)
Q Consensus 320 i~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~aK~~~~---~~a~~~~~~a~~~~Gg~g~~~~~~~~ 395 (439)
+|.+|++|++|.++++++|++++++++.+|++. +...+++++|+|++ +.+.+++++++| +++|+|
T Consensus 274 ---~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E 342 (520)
T PTZ00457 274 ---EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLE 342 (520)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHH
Confidence 489999999999999999999999999999874 45778999999999 888888888876 899999
Q ss_pred HHhhccCCcccccchHHHHH
Q 013626 396 KAFCDIEPIYTYEGTYDINT 415 (439)
Q Consensus 396 r~~rD~~~~~~~~G~~~~~~ 415 (439)
|++||++...+++|++++++
T Consensus 343 ~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 343 KCFANARLFLSMMESRDFLY 362 (520)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999988
No 40
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-46 Score=362.98 Aligned_cols=378 Identities=24% Similarity=0.317 Sum_probs=319.6
Q ss_pred CCCccccccCCCHH--HHHHHHHHHHHHHhhc----cccHH-HHHHhcCCCHHHHHHHHhccccCCccccCCCCCCCHHH
Q 013626 45 ASDYYQFDDLLTSE--EQAVRMKVRECMEKEI----APIMA-EYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTG 117 (439)
Q Consensus 45 ~~~~~~~~~~l~~~--~~~l~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~ 117 (439)
.+|-..|...++.| ...++.++.+.++..- .|... ..++.+++-...|..|.+.|.+..+..+-| + -+...
T Consensus 29 ~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~r~~~l~~~gv~~~~~~~~~-~-~~~~k 106 (661)
T KOG0135|consen 29 TFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMKRIKRLVELGVFKFWLVEDG-P-EAELK 106 (661)
T ss_pred CCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHHHHHHHHHhccCcceeecCc-h-HHHHH
Confidence 45556666666655 3566777777776532 12221 234566666677888888888876552221 1 14557
Q ss_pred HHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CC
Q 013626 118 AAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EG 195 (439)
Q Consensus 118 ~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~ 195 (439)
...++|.++.+|.|++..+++|..+++..+..+||+.+++ |+..+.+-+.++||||||.+||||+.+++|+|+++ .+
T Consensus 107 ~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~ 185 (661)
T KOG0135|consen 107 KFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTE 185 (661)
T ss_pred HHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCC
Confidence 8889999999999999999999999999999999999998 99999999999999999999999999999999997 68
Q ss_pred EEEEE-----eEEEeecCCC-CCCEEEEEEEec---CCCCeEEEEEeCC-------CCCeeeeccccccccccccceeEE
Q 013626 196 GWILE-----GQKRWIGNST-FADVLVIFARNT---TTNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDIL 259 (439)
Q Consensus 196 g~~Ln-----G~K~~is~a~-~ad~~~v~a~~~---~~~~~~~flV~~~-------~pGv~v~~~~~~~Glrg~~~~~v~ 259 (439)
.|+|| ..|+||+|++ +|++.+|+|+.. .+.|++.|||+.. .|||+|.++.+|.|++|++|+.++
T Consensus 186 EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG~l~ 265 (661)
T KOG0135|consen 186 EFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNGFLW 265 (661)
T ss_pred eeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCceEE
Confidence 89999 6999999965 689999999973 2468999999874 689999999999999999999999
Q ss_pred EcceecCCCCCCCCC-----CC------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc----
Q 013626 260 LKKVFVPDEDRLPGV-----NS------------FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA---- 318 (439)
Q Consensus 260 f~~v~Vp~~~~l~~~-----~~------------~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~---- 318 (439)
|+||+||.+|+|... +| +......+..+|++++..++|.++-++.+|++|+..|+|||.
T Consensus 266 F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~~~g 345 (661)
T KOG0135|consen 266 FDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPTKNG 345 (661)
T ss_pred EecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCCCCC
Confidence 999999999999542 11 123345677899999999999999999999999999999984
Q ss_pred ---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CCChhhhhhHHHHHHHHHHHHHHHHHHHhCc
Q 013626 319 ---PLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG----------AMTPGHASLGKSWITARARETVALGRELLGG 385 (439)
Q Consensus 319 ---pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg 385 (439)
||.+||..|+||-.+++..++++.....+...+.+. +..+..++..|.++|+...++.++|++.|||
T Consensus 346 eEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREAcGG 425 (661)
T KOG0135|consen 346 EEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREACGG 425 (661)
T ss_pred CcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHHhcc
Confidence 588999999999999999999999888888777651 2334567789999999999999999999999
Q ss_pred ccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 386 NGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 386 ~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
+||..++.+..+--|-....+|||+|.++..++++.+|+.
T Consensus 426 hGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~ 465 (661)
T KOG0135|consen 426 HGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQ 465 (661)
T ss_pred chHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998875
No 41
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.3e-43 Score=313.94 Aligned_cols=328 Identities=18% Similarity=0.230 Sum_probs=286.8
Q ss_pred HHHhccccCCcc----ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHH--HhhHHHHHHhhcCCHHHHhhhhhhhhcCc
Q 013626 94 KLGALRVAGGTI----KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV--HSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (439)
Q Consensus 94 ~l~~~Gl~~~~~----~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~--~~~~~~~~l~~~g~~~qk~~~l~~l~~g~ 167 (439)
..+..|++.+++ +.|| .|++..++..++|.+++.-...- .+.. ...-.+..|.++|+++||.+||-++..|+
T Consensus 35 ~aK~eGlWNLFlp~~~qkyg-~GLtnveYa~icElmGrs~~APe-VfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~ 112 (392)
T KOG1469|consen 35 MAKVEGLWNLFLPAVSQKYG-AGLTNVEYAHICELMGRSFFAPE-VFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGN 112 (392)
T ss_pred HHHhcchHHhhhHHHHHhhc-cCccchhHHHHHHHhccccccch-hccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCC
Confidence 334589999865 3455 89999999999999998643211 1111 12234568999999999999999999999
Q ss_pred ceeEEEecCCCC-CCCcCCcceEEEEeCCEEEEEeEEEeecCCC--CCCEEEEEEEecCC-----CCeEEEEEeCCCCCe
Q 013626 168 TIACWALTEPAY-GSDASALNTTATKVEGGWILEGQKRWIGNST--FADVLVIFARNTTT-----NQINGYLVKKDAPGL 239 (439)
Q Consensus 168 ~~~~~a~tEp~~-Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~--~ad~~~v~a~~~~~-----~~~~~flV~~~~pGv 239 (439)
+..||+||||+. .||..++++..++++|.|+|||+|||+||+. .+.+.++..+++.. .+-++.+||+++|||
T Consensus 113 irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGv 192 (392)
T KOG1469|consen 113 IRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGV 192 (392)
T ss_pred ceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCe
Confidence 999999999995 8899999999999999999999999999984 58888999888653 356899999999999
Q ss_pred eeeccccccccccc--cceeEEEcceecCCCCCC-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013626 240 TVTKIENKIGLRIV--QNGDILLKKVFVPDEDRL-PGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 316 (439)
Q Consensus 240 ~v~~~~~~~Glrg~--~~~~v~f~~v~Vp~~~~l-~~~~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~f 316 (439)
.|.++....|.... +..+|+|+||+||..|++ |++.||...+.-+.-+|+..|.-.+|.++++++...+-+.+|..|
T Consensus 193 kiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaF 272 (392)
T KOG1469|consen 193 KIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAF 272 (392)
T ss_pred eEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 99988888887654 457899999999999886 556888888888889999999999999999999999999999999
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcH
Q 013626 317 GAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK--GAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLV 394 (439)
Q Consensus 317 g~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~ 394 (439)
|+++..+..+.+.+|+...+++.+|+++..+++.+|. .+......+|.|+.+...+.++.+.++|.+||.|...+.++
T Consensus 273 gk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~l 352 (392)
T KOG1469|consen 273 GKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPL 352 (392)
T ss_pred cchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCcee
Confidence 9999999999999999999999999999999999986 24455678899999999999999999999999999999999
Q ss_pred HHHhhccCCcccccchHHHHHHHHHHHHh
Q 013626 395 AKAFCDIEPIYTYEGTYDINTLVTGREVT 423 (439)
Q Consensus 395 ~r~~rD~~~~~~~~G~~~~~~~~i~r~~l 423 (439)
.++|.-+++.++..|..+++...+++.-+
T Consensus 353 a~l~~~~r~lriadgPd~vhL~ai~~le~ 381 (392)
T KOG1469|consen 353 ANLYAIARVLRIADGPDEVHLSAIAKLEL 381 (392)
T ss_pred eEEEEEeeeEEeccCCCccchhhhhhhhH
Confidence 99999999999999999999998887543
No 42
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=258.34 Aligned_cols=293 Identities=23% Similarity=0.278 Sum_probs=243.2
Q ss_pred hhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeC--CEEEEE-----eEEE
Q 013626 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILE-----GQKR 204 (439)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~--~g~~Ln-----G~K~ 204 (439)
-+..+.+|.++....|..-|++||.++||++-.+.++++|+|.||.+||+++.+++|+|+++. +.|+|| ..||
T Consensus 107 ~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KW 186 (670)
T KOG0136|consen 107 EGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKW 186 (670)
T ss_pred CCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecc
Confidence 344567888888889999999999999999999999999999999999999999999999965 679998 7999
Q ss_pred eecCCC-CCCEEEEEEEecC---CCCeEEEEEeCC-------CCCeeeeccccccccccccceeEEEcceecCCCCCCCC
Q 013626 205 WIGNST-FADVLVIFARNTT---TNQINGYLVKKD-------APGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (439)
Q Consensus 205 ~is~a~-~ad~~~v~a~~~~---~~~~~~flV~~~-------~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~ 273 (439)
|.+|-+ .+.|.+|.|+.-- .-|++.|+||.. .|||+|+++..|||.+|++++-+-||||+||.+++|-.
T Consensus 187 WPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr 266 (670)
T KOG0136|consen 187 WPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMR 266 (670)
T ss_pred cCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhh
Confidence 999954 5899999999732 358999999974 68999999999999999999999999999999999843
Q ss_pred C-----CCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC----c---ccccchhHHHHHHHHH
Q 013626 274 V-----NSF-------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG----A---PLAAFQINQQKLVQML 334 (439)
Q Consensus 274 ~-----~~~-------~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg----~---pi~~~~~vq~~la~~~ 334 (439)
- +|. ......+-..|..+.....-....|..+|++|+.-|+|+. . .|.|||..|+||-...
T Consensus 267 ~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlFP~L 346 (670)
T KOG0136|consen 267 HAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLFPQL 346 (670)
T ss_pred hheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHhHHH
Confidence 1 121 1111122223434444444455567889999999999984 2 3899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------cCC-----CChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccC
Q 013626 335 GNIQAMILVGWRLCKLYE-------KGA-----MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIE 402 (439)
Q Consensus 335 ~~~~a~~~~~~~~~~~~~-------~~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~ 402 (439)
+..++-+.....+.+.+. .+. +.+...+..|+.+++.+.+-++.|+..|||+||+.-+.+.-.|-.+-
T Consensus 347 A~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v 426 (670)
T KOG0136|consen 347 ARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAV 426 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeee
Confidence 999988777766666554 232 22445678999999999999999999999999999999999999999
Q ss_pred CcccccchHHHHHHHHHHHHhC
Q 013626 403 PIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 403 ~~~~~~G~~~~~~~~i~r~~lg 424 (439)
..-+|||.|.++.++++|.+.+
T Consensus 427 ~~CTYEGEN~VmlLQ~ARfLmK 448 (670)
T KOG0136|consen 427 GACTYEGENTVLLLQVARFLVK 448 (670)
T ss_pred eeeeeeccceeehHHHHHHHHH
Confidence 9999999999999999997754
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.95 E-value=5.5e-26 Score=229.08 Aligned_cols=235 Identities=19% Similarity=0.196 Sum_probs=194.1
Q ss_pred hhcCCH--HHHhhhhhhhhcCcceeEEEecCCCC-CCC----cCCcc---eEEEEeCCEEEEEeEEEeecCCCCCCEEEE
Q 013626 148 ALCGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GSD----ASALN---TTATKVEGGWILEGQKRWIGNSTFADVLVI 217 (439)
Q Consensus 148 ~~~g~~--~qk~~~l~~l~~g~~~~~~a~tEp~~-Gsd----~~~~~---t~A~~~~~g~~LnG~K~~is~a~~ad~~~v 217 (439)
..++++ +--.+|+..+...++..+.+++.|.. -|. ...+. -..++++|||+|||.|.|+||+ .||+++|
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V 197 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILI 197 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEE
Confidence 444444 33468999999999999999999975 221 11222 2344588999999999999996 9999999
Q ss_pred EEEecCC----CC--eEEEEEeCCCCCeeeeccccccccccc-----------cceeEEEcceecCCCCC--CCCC---C
Q 013626 218 FARNTTT----NQ--INGYLVKKDAPGLTVTKIENKIGLRIV-----------QNGDILLKKVFVPDEDR--LPGV---N 275 (439)
Q Consensus 218 ~a~~~~~----~~--~~~flV~~~~pGv~v~~~~~~~Glrg~-----------~~~~v~f~~v~Vp~~~~--l~~~---~ 275 (439)
++++... ++ ..+|+||.++||+++....+++|.++. ..+.|.||||+||.+++ ++.. +
T Consensus 198 ~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~ 277 (477)
T TIGR02309 198 FPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCN 277 (477)
T ss_pred eccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHH
Confidence 9997532 22 688999999999999998899999876 67999999999999999 6653 1
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 013626 276 -SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (439)
Q Consensus 276 -~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~ 354 (439)
++.. ...++..++.++|.+.+++|.++.|++. .+|+.++.++|.||++|++|.+.++++++++++++...+.+
T Consensus 278 ~~f~~-----~~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~ 351 (477)
T TIGR02309 278 NAYAA-----TGAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKEN 351 (477)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 2211 1234667899999999999999999999 99999999999999999999999999999999999988774
Q ss_pred C-----CChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccC
Q 013626 355 A-----MTPGHASLGKSWITARARETVALGRELLGGNGILS 390 (439)
Q Consensus 355 ~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 390 (439)
. +....++++|.++++...++. .++|++||.|+..
T Consensus 352 ~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 352 AYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 3 346678999999999999995 9999999999985
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.91 E-value=1.7e-23 Score=180.76 Aligned_cols=149 Identities=25% Similarity=0.420 Sum_probs=144.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 013626 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (439)
Q Consensus 275 ~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~ 354 (439)
+||......+..+|+.+++.++|.++.+++.+.+|+++|++||+|+.++|.++++|+++.++++++++++++++..++++
T Consensus 2 ~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~ 81 (150)
T PF00441_consen 2 QGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAG 81 (150)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhccccccccccccc
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHh
Q 013626 355 AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 423 (439)
Q Consensus 355 ~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~l 423 (439)
.......+++|+++++.+.++++.+++++|+.||..+++++++|||++...+++|++++++..|+|.+|
T Consensus 82 ~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 82 QNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred cccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 888888999999999999999999999999999999999999999999999999999999999999885
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.77 E-value=1.2e-18 Score=142.94 Aligned_cols=112 Identities=45% Similarity=0.544 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhH
Q 013626 56 TSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCST 134 (439)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~ 134 (439)
|++++++++.+++|+++++.|...++|+++.+|+++|++|++.||+++.+ ++|||.|+++.+.+.++++++++|.++++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~ 80 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAF 80 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccc
Confidence 68999999999999999999999999888899999999999999999987 99999999999999999999999999988
Q ss_pred HHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCc
Q 013626 135 FILVHSSLAMLTIALCGSEEQKQKYLPSLAQLN 167 (439)
Q Consensus 135 ~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~ 167 (439)
.+.+|.++++..|..+|+++||++|||++++||
T Consensus 81 ~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 81 ALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 888888777789999999999999999999996
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.66 E-value=9.5e-16 Score=129.68 Aligned_cols=123 Identities=23% Similarity=0.231 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCC-h---
Q 013626 289 VMVAWQPIGISMGVYDMCHRYLKERKQ--FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE----KGAMT-P--- 358 (439)
Q Consensus 289 ~~~aa~~lG~a~~al~~a~~y~~~R~~--fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~----~~~~~-~--- 358 (439)
+.+++.++|+++++++.++++++.|.. .+.++.+.|.+|.+|+++...+++++++++++++.++ .+... .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 468899999999999999999999987 6789999999999999999999999999999999854 34432 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchH
Q 013626 359 GHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTY 411 (439)
Q Consensus 359 ~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~ 411 (439)
......|.++.+.|.++++.+++++||.++...+|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 23456799999999999999999999999999999999999999998887654
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.64 E-value=6.5e-16 Score=107.32 Aligned_cols=52 Identities=44% Similarity=0.742 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEEEEEec
Q 013626 171 CWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (439)
Q Consensus 171 ~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~ 222 (439)
|+|+|||++|+|+..++|+|+++++||+|||+|+||+|++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999973
No 48
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.36 E-value=1.4e-10 Score=113.17 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=155.0
Q ss_pred cCCH--HHHhhhhhhhhcCcceeEEEecCCCC-CCCc----C--CcceEE-EEeCCEEEEEeEEEeecCCCCCCEEEEE-
Q 013626 150 CGSE--EQKQKYLPSLAQLNTIACWALTEPAY-GSDA----S--ALNTTA-TKVEGGWILEGQKRWIGNSTFADVLVIF- 218 (439)
Q Consensus 150 ~g~~--~qk~~~l~~l~~g~~~~~~a~tEp~~-Gsd~----~--~~~t~A-~~~~~g~~LnG~K~~is~a~~ad~~~v~- 218 (439)
++++ +--.+|+..+...++..+-|+|.|.. -|.. . .+-.+. +..+||.+++|.|..+||++.+|..+|+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~P 204 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLP 204 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEee
Confidence 5555 34467999999999999999999874 2221 1 122333 3478999999999999999999999888
Q ss_pred EEe--cCC-CCeEEEEEeCCCCCeeeeccc---cccccccccc------------eeEEEcceecCCCCCCCCCC-----
Q 013626 219 ARN--TTT-NQINGYLVKKDAPGLTVTKIE---NKIGLRIVQN------------GDILLKKVFVPDEDRLPGVN----- 275 (439)
Q Consensus 219 a~~--~~~-~~~~~flV~~~~pGv~v~~~~---~~~Glrg~~~------------~~v~f~~v~Vp~~~~l~~~~----- 275 (439)
.+. +++ +--..|.+|.++|||.+.-.. ..-|+-+.+. +-|.||||+||.++++--.+
T Consensus 205 t~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~ 284 (493)
T COG2368 205 TRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAY 284 (493)
T ss_pred ccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHH
Confidence 333 222 334569999999999875332 2222222332 33999999999999984321
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013626 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGA 355 (439)
Q Consensus 276 ~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~ 355 (439)
.+.....+....|...+..-.+-.+-.+-.+..-++ . .-+.+|+.||.+|+||.+-.+.++++...++.......
T Consensus 285 ~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~---~--~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~ 359 (493)
T COG2368 285 AWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAE---T--NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNP 359 (493)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH---h--hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 111111122222322222222222211111111111 0 23578999999999999999999999988887544322
Q ss_pred -----CChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcC
Q 013626 356 -----MTPGHASLGKSWITARARETVALGRELLGGNGILSDF 392 (439)
Q Consensus 356 -----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 392 (439)
+....+...|.++...-.++.+.+.++.||.-.+..+
T Consensus 360 ~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lPS 401 (493)
T COG2368 360 NGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITLPS 401 (493)
T ss_pred CCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeecCc
Confidence 4455677899999999999999999998886555433
No 49
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.31 E-value=1.7e-10 Score=116.51 Aligned_cols=220 Identities=9% Similarity=0.062 Sum_probs=142.9
Q ss_pred HHHhhhhhhhhcCcceeEEEecCCCC-CCCc----CCcce-EEEEeCCEEEEEeEEEeecCCCCCCEEEE-EEEe---cC
Q 013626 154 EQKQKYLPSLAQLNTIACWALTEPAY-GSDA----SALNT-TATKVEGGWILEGQKRWIGNSTFADVLVI-FARN---TT 223 (439)
Q Consensus 154 ~qk~~~l~~l~~g~~~~~~a~tEp~~-Gsd~----~~~~t-~A~~~~~g~~LnG~K~~is~a~~ad~~~v-~a~~---~~ 223 (439)
+--.+|+..+.+.++..+.+++.|.. -|-. ..+-. ..+++++|.+|+|.|...|+++.+|.++| .... .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 33467999999999999999999874 2211 11222 33457899999999999999999999888 4443 12
Q ss_pred CCC-eEEEEEeCCCCCeeeecccccc----ccc-----------cccceeEEEcceecCCCCCCCCCC-----ChHHHHH
Q 013626 224 TNQ-INGYLVKKDAPGLTVTKIENKI----GLR-----------IVQNGDILLKKVFVPDEDRLPGVN-----SFQDTSK 282 (439)
Q Consensus 224 ~~~-~~~flV~~~~pGv~v~~~~~~~----Glr-----------g~~~~~v~f~~v~Vp~~~~l~~~~-----~~~~~~~ 282 (439)
+.. -..|.||.++|||++......- +.. +-.-+-+.||||+||.|+++--.+ .+.....
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~ 295 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGG 295 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhh
Confidence 333 3569999999999987433211 000 112256889999999999983322 1111111
Q ss_pred HHHHH-H------HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Q 013626 283 VLAVS-R------VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG- 354 (439)
Q Consensus 283 ~~~~~-r------~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~- 354 (439)
....+ + +..+=..+|++..+.+. .-+..++.||.+|++|....+.++++...+.......
T Consensus 296 ~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~------------~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~ 363 (519)
T TIGR02310 296 FARLFPMQACTRLAVKLDFITGLLHKALQC------------TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWK 363 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence 11111 1 11111223333322221 2356789999999999999999999888776543321
Q ss_pred ----CCChhhhhhHHHHHHHHHHHHHHHHHHHhCc
Q 013626 355 ----AMTPGHASLGKSWITARARETVALGRELLGG 385 (439)
Q Consensus 355 ----~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg 385 (439)
.+....+..+|.+..+.--++.+.+.++.||
T Consensus 364 ~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 364 NGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred CCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 1334456789999999999999988866654
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.54 E-value=4.3e-07 Score=84.35 Aligned_cols=117 Identities=19% Similarity=0.326 Sum_probs=75.6
Q ss_pred HHhhhhhhhhcCcceeEEEecCCCC-CC-Cc-C---CcceEEE-EeCCEEEEEeEEEeecCCCCCCEEEEEEEec---CC
Q 013626 155 QKQKYLPSLAQLNTIACWALTEPAY-GS-DA-S---ALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNT---TT 224 (439)
Q Consensus 155 qk~~~l~~l~~g~~~~~~a~tEp~~-Gs-d~-~---~~~t~A~-~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~---~~ 224 (439)
--.+|+..+.+.++..+.+++.|.. -| .+ . .+-.+.+ ++++|.+|+|.|...|+++.+|.++|+-... ++
T Consensus 124 n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d 203 (264)
T PF11794_consen 124 NIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGD 203 (264)
T ss_dssp HHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCC
T ss_pred HHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCC
Confidence 3457889999999999999999974 22 11 1 1333444 4789999999999999999999999986442 12
Q ss_pred -CCeEEEEEeCCCCCeeeecccccccccc--c----------cceeEEEcceecCCCCCC
Q 013626 225 -NQINGYLVKKDAPGLTVTKIENKIGLRI--V----------QNGDILLKKVFVPDEDRL 271 (439)
Q Consensus 225 -~~~~~flV~~~~pGv~v~~~~~~~Glrg--~----------~~~~v~f~~v~Vp~~~~l 271 (439)
+--.+|.||.++||+++.........+. . .-+-|.||||+||.++++
T Consensus 204 ~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 204 EDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp GGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 2345799999999999875443322221 1 126789999999999875
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=95.14 E-value=1.5 Score=39.63 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=56.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--CCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccC
Q 013626 320 LAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---G--AMTPGHASLGKSWITARARETVALGRELLGGNGILS 390 (439)
Q Consensus 320 i~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 390 (439)
+..++.||++|+||....+.+++++..+...... | .++......+|.+..+..-++++.+.+++||.=++.
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 5679999999999999999999999877654332 1 134456778999999999999999999988876664
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=92.64 E-value=1.5 Score=45.47 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=61.9
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChh-hhhhHHHHHHHHHHHHHHHHHHHhCcccccC
Q 013626 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPG-HASLGKSWITARARETVALGRELLGGNGILS 390 (439)
Q Consensus 316 fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 390 (439)
+|+.|.+.|.+..||+++.+.+++|.+.+-++...+.++.+... +..+++.||.+...++-..+-+++.. ++..
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~ 503 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTA 503 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 57889999999999999999999999999999888877654432 35689999999999998888888876 5544
No 53
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=91.56 E-value=0.17 Score=41.73 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=28.6
Q ss_pred HHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcce
Q 013626 136 ILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTI 169 (439)
Q Consensus 136 ~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~ 169 (439)
+.+|.++...+|...||+||+++|||...+.++|
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 4589888999999999999999999998887753
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=89.42 E-value=4.4 Score=41.73 Aligned_cols=70 Identities=20% Similarity=0.145 Sum_probs=60.3
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-hhhhhhHHHHHHHHHHHHHHHHHHHhCc
Q 013626 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-PGHASLGKSWITARARETVALGRELLGG 385 (439)
Q Consensus 316 fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~aK~~~~~~a~~~~~~a~~~~Gg 385 (439)
+|+.|.+.|.+-++||+..+++++|.+.+-++.+.+..+-+. .-+...++++|++...++-..+-++.++
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 688999999999999999999999999999999999887543 4467888999999888888887776665
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=52.15 E-value=1.9e+02 Score=31.84 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=63.1
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHH
Q 013626 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVA 395 (439)
Q Consensus 316 fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~ 395 (439)
+|..|...|.+..||+|+.+.++++.+.+.+.- +++..... ..+++.++.+...++-+..-++..... ...+.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEAD-LPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 477788999999999999999999988777665 44544333 456666666655555444444443332 12244
Q ss_pred HHhhccCC--cccccchHHHHHHHHHHHHh
Q 013626 396 KAFCDIEP--IYTYEGTYDINTLVTGREVT 423 (439)
Q Consensus 396 r~~rD~~~--~~~~~G~~~~~~~~i~r~~l 423 (439)
..+|-+-. ...+.+.+|-+...+++.++
T Consensus 632 ~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~ 661 (777)
T PRK09463 632 GLLRVLVFPLGRRYRAPSDKLDHQVAKLLQ 661 (777)
T ss_pred HHHHHeeeCCCCCCCCCCHHHHHHHHHHHh
Confidence 44443321 23455666777777777664
No 56
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=37.48 E-value=55 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=25.9
Q ss_pred EEEEeEEEeecCCCCCCEEEEEEEecCCCCeEEEEE
Q 013626 197 WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLV 232 (439)
Q Consensus 197 ~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV 232 (439)
|-|.|+|.|+-.+++-.-+-+.-+.+...+.++++|
T Consensus 2 fdi~gqkayikdgp~rnrigivk~~e~q~~~~f~iv 37 (68)
T PF13051_consen 2 FDIVGQKAYIKDGPYRNRIGIVKKNEKQLESHFAIV 37 (68)
T ss_pred ccccccEeeeccCCccceeEEEecchhhcCCcEEEE
Confidence 457899999999999887766655554445555555
No 57
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=33.91 E-value=1.4e+02 Score=21.35 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHhh-ccccHHHHHHhcCCC-----HHHHHHHHhccccCC
Q 013626 54 LLTSEEQAVRMKVRECMEKE-IAPIMAEYWEKAEFP-----FHVIPKLGALRVAGG 103 (439)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~Gl~~~ 103 (439)
.|++.|.++++-+.++..++ ..|-..++-+.-.+. ...++.|.+.|++.-
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCccC
Confidence 47899999999999998875 456666655543343 346778888888763
Done!