Query 013626
Match_columns 439
No_of_seqs 306 out of 1541
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 14:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix5_A Acyl-coenzyme A oxidase 100.0 2.8E-77 9.7E-82 602.7 44.3 402 35-439 35-436 (436)
2 3sf6_A Glutaryl-COA dehydrogen 100.0 3.8E-74 1.3E-78 575.7 41.8 382 46-429 21-403 (403)
3 3swo_A Glutaryl-COA dehydrogen 100.0 5.9E-74 2E-78 573.8 40.7 383 46-430 17-399 (399)
4 3ii9_A Glutaryl-COA dehydrogen 100.0 1.4E-74 5E-79 577.6 34.9 384 46-429 10-396 (396)
5 3p4t_A Putative acyl-COA dehyd 100.0 6.2E-73 2.1E-77 566.9 42.2 382 45-427 16-403 (403)
6 2eba_A Putative glutaryl-COA d 100.0 9.7E-73 3.3E-77 562.5 42.1 380 47-427 3-384 (385)
7 2d29_A Acyl-COA dehydrogenase; 100.0 3.1E-72 1E-76 559.3 42.8 375 50-424 2-385 (387)
8 3pfd_A Acyl-COA dehydrogenase; 100.0 1.3E-72 4.4E-77 563.0 37.4 377 47-424 11-393 (393)
9 1ukw_A Acyl-COA dehydrogenase; 100.0 6.4E-72 2.2E-76 555.5 41.7 373 51-424 1-378 (379)
10 1siq_A GCD, glutaryl-COA dehyd 100.0 7.4E-72 2.5E-76 557.5 40.6 383 47-430 6-390 (392)
11 2jif_A Short/branched chain sp 100.0 1.3E-71 4.6E-76 557.0 42.3 378 46-424 20-402 (404)
12 1buc_A Butyryl-COA dehydrogena 100.0 1.2E-71 4.1E-76 554.4 41.3 374 51-424 1-383 (383)
13 2dvl_A Acyl-COA dehydrogenase; 100.0 1.5E-71 5E-76 551.5 41.0 369 54-424 2-372 (372)
14 3r7k_A Probable acyl COA dehyd 100.0 1.4E-71 4.8E-76 557.1 40.3 374 49-422 23-401 (403)
15 1egd_A Medium chain acyl-COA d 100.0 2.5E-71 8.7E-76 554.2 40.6 376 49-425 10-393 (396)
16 2vig_A Short-chain specific ac 100.0 3.2E-71 1.1E-75 552.5 40.6 375 51-425 2-381 (391)
17 3nf4_A Acyl-COA dehydrogenase; 100.0 3.5E-71 1.2E-75 551.8 39.8 371 52-423 13-386 (387)
18 2pg0_A Acyl-COA dehydrogenase; 100.0 2E-70 6.7E-75 545.9 43.0 370 51-422 5-383 (385)
19 1ivh_A Isovaleryl-COA dehydrog 100.0 7.5E-71 2.6E-75 550.4 39.3 372 53-424 11-391 (394)
20 1rx0_A Acyl-COA dehydrogenase 100.0 2E-70 6.7E-75 547.1 41.6 374 50-424 14-392 (393)
21 3mpi_A Glutaryl-COA dehydrogen 100.0 1.8E-70 6.1E-75 548.5 36.2 376 51-429 1-388 (397)
22 1r2j_A Protein FKBI; polyketid 100.0 2.3E-70 7.8E-75 541.7 35.2 360 64-426 2-365 (366)
23 4hr3_A Putative acyl-COA dehyd 100.0 3.2E-70 1.1E-74 549.7 33.9 378 48-425 2-411 (415)
24 3owa_A Acyl-COA dehydrogenase; 100.0 3.1E-69 1E-73 561.4 37.9 373 51-425 29-425 (597)
25 2z1q_A Acyl-COA dehydrogenase; 100.0 6.7E-68 2.3E-72 551.5 37.2 370 54-425 27-415 (577)
26 3mkh_A Nitroalkane oxidase; ox 100.0 1.5E-67 5E-72 534.0 33.7 375 50-426 2-418 (438)
27 2wbi_A Acyl-COA dehydrogenase 100.0 6E-67 2E-71 527.4 30.5 377 47-425 15-419 (428)
28 2uxw_A VERY-long-chain specifi 100.0 6E-66 2.1E-70 538.1 38.7 368 51-420 42-426 (607)
29 2c12_A Nitroalkane oxidase; ox 100.0 7.4E-66 2.5E-70 521.5 38.0 378 51-430 2-424 (439)
30 3mxl_A Nitrososynthase; flavin 100.0 9.7E-64 3.3E-68 499.6 31.0 367 49-426 3-395 (395)
31 2or0_A Hydroxylase; APC7385, r 100.0 6.6E-63 2.3E-67 496.3 29.3 363 51-430 14-407 (414)
32 3m9v_A FAD-dependent oxidoredu 100.0 2.6E-62 8.8E-67 495.6 33.8 371 47-428 12-408 (439)
33 2rfq_A 3-HSA hydroxylase, oxyg 100.0 2.4E-61 8.3E-66 482.1 34.5 352 60-428 10-390 (394)
34 2jbr_A P-hydroxyphenylacetate 100.0 4.4E-61 1.5E-65 484.1 30.1 352 60-428 38-418 (422)
35 1w07_A Acyl-COA oxidase; oxido 100.0 5E-57 1.7E-61 475.5 28.1 372 46-426 16-442 (659)
36 3djl_A Protein AIDB; alpha hel 100.0 3.9E-54 1.4E-58 442.5 30.1 327 89-427 89-444 (541)
37 2ddh_A Acyl-COA oxidase; beta 100.0 1E-53 3.4E-58 449.7 31.4 367 46-425 14-438 (661)
38 2yyk_A 4-hydroxyphenylacetate- 100.0 8.2E-41 2.8E-45 339.2 22.8 313 80-422 69-422 (481)
39 1u8v_A Gamma-aminobutyrate met 100.0 3.9E-40 1.3E-44 334.7 25.4 257 145-409 118-413 (490)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 5.5E-34 1.9E-38 288.8 26.2 235 150-391 127-392 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 100.0 2.8E-27 9.6E-32 240.1 22.6 241 154-401 134-401 (517)
42 3owa_A Acyl-COA dehydrogenase; 93.7 0.44 1.5E-05 49.1 11.9 107 316-424 482-591 (597)
43 2uxw_A VERY-long-chain specifi 86.9 6.1 0.00021 40.6 12.8 68 316-383 506-574 (607)
44 2z1q_A Acyl-COA dehydrogenase; 65.8 89 0.003 31.5 13.9 102 316-427 468-572 (577)
No 1
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=2.8e-77 Score=602.68 Aligned_cols=402 Identities=86% Similarity=1.379 Sum_probs=375.3
Q ss_pred CCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCccccCCCCCCC
Q 013626 35 ATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHS 114 (439)
Q Consensus 35 ~~~~~~~p~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~ 114 (439)
.++++.+|+...|+++|++.+++|++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+++|||.|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~pe~GG~G~~ 114 (436)
T 2ix5_A 35 ATPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLS 114 (436)
T ss_dssp SCCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHTTTCTTTTCCSTTCCCCC
T ss_pred cCCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHHcCCCcCcCCCCCCCCCC
Confidence 34557788888899999999999999999999999999998888777888899999999999999999976799999999
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeC
Q 013626 115 VTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE 194 (439)
Q Consensus 115 ~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~ 194 (439)
+.+...++|+++++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++
T Consensus 115 ~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~g 194 (436)
T 2ix5_A 115 ITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVE 194 (436)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred HHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeC
Confidence 99999999999999999887777787667788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeEEEeecCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC
Q 013626 195 GGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV 274 (439)
Q Consensus 195 ~g~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~ 274 (439)
|||+|||+|.||||+..|||++|+|++++++++++|+||++.|||++.+.|+++|++++++++|+||||+||++++|+..
T Consensus 195 dg~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~ 274 (436)
T 2ix5_A 195 GGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV 274 (436)
T ss_dssp TEEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC
T ss_pred CEEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc
Confidence 99999999999999999999999999975567999999999999999999999999999999999999999999999877
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 013626 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (439)
Q Consensus 275 ~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~ 354 (439)
+++......++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++
T Consensus 275 ~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g 354 (436)
T 2ix5_A 275 NSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETG 354 (436)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78888888899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCCCCcchhh
Q 013626 355 AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFKPVALA 434 (439)
Q Consensus 355 ~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~~~~~~~~ 434 (439)
......++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.+++|.++|+++|.+ .
T Consensus 355 ~~~~~~as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llgl~~~~~---~ 431 (436)
T 2ix5_A 355 QMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKP---A 431 (436)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSCCCCSC---C
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhCCccccc---h
Confidence 7666778999999999999999999999999999999999999999999999999999999999999999998874 3
Q ss_pred hccCC
Q 013626 435 TRSRL 439 (439)
Q Consensus 435 ~~~~~ 439 (439)
.+|+|
T Consensus 432 ~~~~~ 436 (436)
T 2ix5_A 432 TRSRL 436 (436)
T ss_dssp -----
T ss_pred hhccC
Confidence 45553
No 2
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.8e-74 Score=575.72 Aligned_cols=382 Identities=34% Similarity=0.612 Sum_probs=366.3
Q ss_pred CCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCC-HHHHHHHHhccccCCccccCCCCCCCHHHHHHHHHH
Q 013626 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAE 124 (439)
Q Consensus 46 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~ 124 (439)
.|...|++.++++++++++.+++|+++++.|.+.+.++.+.+| +++|++|++.||+++.+++|||.|+++.+...++|+
T Consensus 21 ~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~ee 100 (403)
T 3sf6_A 21 DDLIGINAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVAYGLACLE 100 (403)
T ss_dssp HHHHTCGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTSCSTTCCCCCHHHHHHHHHH
T ss_pred cchhccCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccchhhCCCCCCHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999 999999999999999559999999999999999999
Q ss_pred HhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEE
Q 013626 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR 204 (439)
Q Consensus 125 la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~ 204 (439)
++++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus 101 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 180 (403)
T 3sf6_A 101 LEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKM 180 (403)
T ss_dssp HHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEE
T ss_pred HHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEE
Confidence 99999999888888876777889999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCCChHHHHHHH
Q 013626 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL 284 (439)
Q Consensus 205 ~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~ 284 (439)
||||+..||+++|+|+++ +++++|+||++.|||++.+.|+++|+|++++++|+||||+||++++|+...++......+
T Consensus 181 ~is~a~~Ad~~~v~ar~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l 258 (403)
T 3sf6_A 181 WITNGSVADVAVVWARTD--EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLGAPLRCL 258 (403)
T ss_dssp EEETGGGCSEEEEEEEET--TEEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred eecCCcccCEEEEEEEeC--CceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCCChhHHHHHHHH
Confidence 999999999999999986 469999999999999999999999999999999999999999999998867888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhH
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 364 (439)
+.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+......++++
T Consensus 259 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~a 338 (403)
T 3sf6_A 259 NEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLG 338 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888777889999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCCCC
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFK 429 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~~~ 429 (439)
|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.+++|.++|+|+|+
T Consensus 339 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llgl~~~~ 403 (403)
T 3sf6_A 339 KLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGVGAFR 403 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 3
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.9e-74 Score=573.80 Aligned_cols=383 Identities=31% Similarity=0.569 Sum_probs=366.4
Q ss_pred CCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCccccCCCCCCCHHHHHHHHHHH
Q 013626 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEI 125 (439)
Q Consensus 46 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~l 125 (439)
.|.++|++.++++++++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++.+++|||.|+++.+...++|++
T Consensus 17 ~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~e~GG~g~~~~~~~~v~eel 96 (399)
T 3swo_A 17 LELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVSYGLACMEL 96 (399)
T ss_dssp HHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTSCSTTCCCCCHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCChhhhCCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999999999998888899999999999999999999995599999999999999999999
Q ss_pred hccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEe
Q 013626 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (439)
Q Consensus 126 a~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~ 205 (439)
+++|+++++.+.+|.+++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~ 176 (399)
T 3swo_A 97 EAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMW 176 (399)
T ss_dssp HHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEE
T ss_pred HHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEe
Confidence 99999988888888767778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCCChHHHHHHHH
Q 013626 206 IGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLA 285 (439)
Q Consensus 206 is~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~~ 285 (439)
|||+..|||++|+|+++ +++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++++...++......++
T Consensus 177 vs~a~~Ad~~~v~a~~~--~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l~ 254 (399)
T 3swo_A 177 ITNGNLADVATVWAQTD--DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSCLN 254 (399)
T ss_dssp EETTTTCSEEEEEEBCT--TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHHHH
T ss_pred ECCCCccCEEEEEEEeC--CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHHHH
Confidence 99999999999999986 5699999999999999999999999999999999999999999999988678888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHH
Q 013626 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (439)
Q Consensus 286 ~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK 365 (439)
.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+......++++|
T Consensus 255 ~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK 334 (399)
T 3swo_A 255 EARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGK 334 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877778899999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCCCCc
Q 013626 366 SWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFKP 430 (439)
Q Consensus 366 ~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~~~~ 430 (439)
.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..++|.++|+|+|.+
T Consensus 335 ~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg~p~~~~ 399 (399)
T 3swo_A 335 LNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAFRS 399 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSCCCCC-
T ss_pred HHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999998753
No 4
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=1.4e-74 Score=577.64 Aligned_cols=384 Identities=36% Similarity=0.596 Sum_probs=360.3
Q ss_pred CCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHH
Q 013626 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAE 124 (439)
Q Consensus 46 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~ 124 (439)
.|++.|++.+++|++++++.+++|+++++.|.+.+.++.+.+|.++|++|++.||+++.+ ++|||.|+++.+...++|+
T Consensus 10 ~~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ee 89 (396)
T 3ii9_A 10 DDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIARE 89 (396)
T ss_dssp TSTTCGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHH
T ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 468899999999999999999999999899998889999999999999999999999977 9999999999999999999
Q ss_pred HhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEE
Q 013626 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR 204 (439)
Q Consensus 125 la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~ 204 (439)
++++|+++++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 169 (396)
T 3ii9_A 90 VERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKM 169 (396)
T ss_dssp HHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEE
T ss_pred HHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEE
Confidence 99999998888887766666778999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCEEEEEEEecCC--CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCCChHHHHH
Q 013626 205 WIGNSTFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSK 282 (439)
Q Consensus 205 ~is~a~~ad~~~v~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~~~~~~~~ 282 (439)
||||+..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||++++|+...++.....
T Consensus 170 ~vs~a~~Ad~~~v~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~~~g~~~~~~ 249 (396)
T 3ii9_A 170 WITNSPIADVFVVWAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGLRGPFT 249 (396)
T ss_dssp EEETGGGCSEEEEEEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTTCCSTHHHHH
T ss_pred eECCCccCCEEEEEEEecCCCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCCChHHHHHHH
Confidence 99999999999999998532 3589999999999999999999999999999999999999999999987778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhh
Q 013626 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHAS 362 (439)
Q Consensus 283 ~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 362 (439)
.++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++++......++
T Consensus 250 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~ 329 (396)
T 3ii9_A 250 CLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITS 329 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877777899
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCCCC
Q 013626 363 LGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFK 429 (439)
Q Consensus 363 ~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~~~ 429 (439)
++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.+|+|.++|+|+|.
T Consensus 330 ~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llglp~~~ 396 (396)
T 3ii9_A 330 IMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGIQAFF 396 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 5
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=6.2e-73 Score=566.94 Aligned_cols=382 Identities=22% Similarity=0.288 Sum_probs=357.8
Q ss_pred CCCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHH
Q 013626 45 ASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (439)
Q Consensus 45 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (439)
..++..|++.+++++.++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|
T Consensus 16 ~~~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~e 95 (403)
T 3p4t_A 16 TQGPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICE 95 (403)
T ss_dssp -------CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHH
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999977 999999999999999999
Q ss_pred HHhccCCch-hHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeE
Q 013626 124 EIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQ 202 (439)
Q Consensus 124 ~la~~d~s~-~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~ 202 (439)
+++++|+++ ++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+
T Consensus 96 el~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~ 175 (403)
T 3p4t_A 96 EMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGA 175 (403)
T ss_dssp HHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEE
T ss_pred HHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEE
Confidence 999999998 7777777666777899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCEEEEEEEecCC--CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHH
Q 013626 203 KRWIGNSTFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQD 279 (439)
Q Consensus 203 K~~is~a~~ad~~~v~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~ 279 (439)
|.||||+..||+++|+|+++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++..
T Consensus 176 K~~vs~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~ 255 (403)
T 3p4t_A 176 KTYITSGVRADYVVTAARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQ 255 (403)
T ss_dssp EEEEETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHH
T ss_pred EEEecCCcccCEEEEEEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHH
Confidence 9999999999999999998653 57899999999999999999999999999999999999999999999876 56778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-h
Q 013626 280 TSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT-P 358 (439)
Q Consensus 280 ~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 358 (439)
....++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.+++++++++++++++.++.+... .
T Consensus 256 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~ 335 (403)
T 3p4t_A 256 IAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLI 335 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCch
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999988766 6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCC
Q 013626 359 GHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIAS 427 (439)
Q Consensus 359 ~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~ 427 (439)
..++++|+++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.++++.+ |+|.
T Consensus 336 ~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l-glps 403 (403)
T 3p4t_A 336 AEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL-GFQS 403 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH-TTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc-CCCC
Confidence 7789999999999999999999999999999999999999999999999999999999999998 8863
No 6
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=9.7e-73 Score=562.52 Aligned_cols=380 Identities=37% Similarity=0.674 Sum_probs=356.5
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHH
Q 013626 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 125 (439)
Q Consensus 47 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 125 (439)
|++.|++.++++++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel 82 (385)
T 2eba_A 3 DFYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYEL 82 (385)
T ss_dssp CTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHH
Confidence 45668888999999999999999999899988888888899999999999999999977 99999999999999999999
Q ss_pred hccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCc-CCcceEEEEeCCEEEEEeEEE
Q 013626 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDA-SALNTTATKVEGGWILEGQKR 204 (439)
Q Consensus 126 a~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~-~~~~t~A~~~~~g~~LnG~K~ 204 (439)
+++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+ ..+.|+|++++|||+|||+|.
T Consensus 83 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~ 162 (385)
T 2eba_A 83 ERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKM 162 (385)
T ss_dssp HHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEE
T ss_pred HHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeee
Confidence 9999999988888876667788899999999999999999999999999999999999 999999999999999999999
Q ss_pred eecCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCCChHHHHHHH
Q 013626 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL 284 (439)
Q Consensus 205 ~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~ 284 (439)
||||+..|||++|+|++++. .+++|+||++.|||++.+.|+++|++++++++|.||||+||++++|....++......+
T Consensus 163 ~~s~~~~Ad~~~v~a~~~~g-~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l~~~~g~~~~~~~l 241 (385)
T 2eba_A 163 WITNGNLAHLAVIWAKDEGG-EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALGLKAPLSCL 241 (385)
T ss_dssp EEETTTTCSEEEEEEECC----EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBCTTCCSTHHHHHHH
T ss_pred ccCCCcccCEEEEEEEeCCC-cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHccCCCchHHHHHHHH
Confidence 99999999999999998632 38899999999999999999999999999999999999999999994447788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhH
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 364 (439)
+..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++++......++++
T Consensus 242 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~a 321 (385)
T 2eba_A 242 TQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLA 321 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCeeHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887767778999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCC
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIAS 427 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~ 427 (439)
|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++.++|+|.
T Consensus 322 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llgl~~ 384 (385)
T 2eba_A 322 KRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITGLNA 384 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 7
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=3.1e-72 Score=559.31 Aligned_cols=375 Identities=32% Similarity=0.463 Sum_probs=354.8
Q ss_pred ccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
.|++.+++++.++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|+++++
T Consensus 2 ~m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 81 (387)
T 2d29_A 2 GLWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY 81 (387)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 47888999999999999999998899988888888999999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecC
Q 013626 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (439)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~ 208 (439)
|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 161 (387)
T 2d29_A 82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ 161 (387)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence 99998877777556677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEecCC-------CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHH
Q 013626 209 STFADVLVIFARNTTT-------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (439)
Q Consensus 209 a~~ad~~~v~a~~~~~-------~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~ 280 (439)
+..|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||++++|+.. .++...
T Consensus 162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 241 (387)
T 2d29_A 162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV 241 (387)
T ss_dssp TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence 9999999999998633 26899999999999999999999999999999999999999999999875 567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 013626 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360 (439)
Q Consensus 281 ~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 360 (439)
...++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++.+......
T Consensus 242 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~ 321 (387)
T 2d29_A 242 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLE 321 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999987766677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 361 ~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++.+++
T Consensus 322 ~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~ 385 (387)
T 2d29_A 322 AAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLE 385 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999999999876
No 8
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=1.3e-72 Score=563.03 Aligned_cols=377 Identities=31% Similarity=0.419 Sum_probs=345.8
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHH
Q 013626 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 125 (439)
Q Consensus 47 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 125 (439)
++..|++.+++++.++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|++
T Consensus 11 ~p~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel 90 (393)
T 3pfd_A 11 NPSFELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEV 90 (393)
T ss_dssp -----------CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999977 99999999999999999999
Q ss_pred hccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEe
Q 013626 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (439)
Q Consensus 126 a~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~ 205 (439)
+++|+++++.+..|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus 91 a~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 169 (393)
T 3pfd_A 91 ARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCW 169 (393)
T ss_dssp HTTCHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEE
T ss_pred HhhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEE
Confidence 999999988766664 4556788999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHH
Q 013626 206 IGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (439)
Q Consensus 206 is~a~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (439)
+||+..|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++....
T Consensus 170 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~ 249 (393)
T 3pfd_A 170 ITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTAL 249 (393)
T ss_dssp EETTTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred ecCCcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHH
Confidence 9999999999999998643 57899999999999999999999999999999999999999999999875 5778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-Chhh
Q 013626 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGH 360 (439)
Q Consensus 282 ~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 360 (439)
..++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++.. ....
T Consensus 250 ~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~ 329 (393)
T 3pfd_A 250 ATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFI 329 (393)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999999998765 5567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 361 ~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.+|+|.++|
T Consensus 330 ~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 330 SAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999999999999999999999999976
No 9
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=6.4e-72 Score=555.49 Aligned_cols=373 Identities=31% Similarity=0.474 Sum_probs=353.3
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccC
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (439)
|++.+++++.++++.+++|+++++.|.+.+.++.+.+|+++|++|.+.||+++.+ ++|||.|+++.+...++|+++++|
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~ 80 (379)
T 1ukw_A 1 IDFSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (379)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 6677899999999999999988899988888888999999999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCC
Q 013626 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (439)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a 209 (439)
+++++.+.+|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 81 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 159 (379)
T 1ukw_A 81 MGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG 159 (379)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence 99888777773 56778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHH
Q 013626 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLA 285 (439)
Q Consensus 210 ~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~ 285 (439)
..|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++......++
T Consensus 160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~ 239 (379)
T 1ukw_A 160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLN 239 (379)
T ss_dssp TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHH
T ss_pred CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHH
Confidence 999999999998642 47899999999999999999999999999999999999999999999875 56777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHH
Q 013626 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (439)
Q Consensus 286 ~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK 365 (439)
.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+......++++|
T Consensus 240 ~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK 319 (379)
T 1ukw_A 240 KTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAK 319 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776667889999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 366 SWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 366 ~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..|++.+++
T Consensus 320 ~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 320 AYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999875
No 10
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=7.4e-72 Score=557.48 Aligned_cols=383 Identities=36% Similarity=0.570 Sum_probs=360.1
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCccccCCCCCCCHHHHHHHHHHHh
Q 013626 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIA 126 (439)
Q Consensus 47 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la 126 (439)
+++.|++.+++|++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+++|||.|+++.+...++|+++
T Consensus 6 ~~~~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~~~~GG~g~~~~~~~~~~eel~ 85 (392)
T 1siq_A 6 DPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELE 85 (392)
T ss_dssp STTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTCEETTEECCCHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccHHhhCCCCCCHHHHHHHHHHHH
Confidence 56678889999999999999999998898888888888899999999999999999955999999999999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEEeEEE
Q 013626 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQKR 204 (439)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~LnG~K~ 204 (439)
++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|+++ +|||+|||+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~ 165 (392)
T 1siq_A 86 RVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKT 165 (392)
T ss_dssp TTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEE
T ss_pred HhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEE
Confidence 9999988777677655567788999999999999999999999999999999999999999999999 99999999999
Q ss_pred eecCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCCCChHHHHHHH
Q 013626 205 WIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVL 284 (439)
Q Consensus 205 ~is~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~~~~~~~~~~~ 284 (439)
||||+..|||++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|+||||+||++++++...++......+
T Consensus 166 ~vs~~~~Ad~~~v~a~~~~-g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~l 244 (392)
T 1siq_A 166 WITNSPMADLFVVWARCED-GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCL 244 (392)
T ss_dssp EEETGGGCSEEEEEEEETT-SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCCSSHHHHHHH
T ss_pred eecCCcccCEEEEEEEECC-CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcccCHHHHHHHH
Confidence 9999999999999999863 458999999999999999999999999999999999999999999998767777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhH
Q 013626 285 AVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLG 364 (439)
Q Consensus 285 ~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 364 (439)
+..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.++++......++++
T Consensus 245 ~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~~~~~~~~~~~a 324 (392)
T 1siq_A 245 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLL 324 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999877666778999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCCCCc
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIASFKP 430 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~~~~ 430 (439)
|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++.++|+|.+..
T Consensus 325 K~~~~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llgl~~~~~ 390 (392)
T 1siq_A 325 KRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTA 390 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999987643
No 11
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=1.3e-71 Score=557.04 Aligned_cols=378 Identities=30% Similarity=0.445 Sum_probs=353.2
Q ss_pred CCccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHH
Q 013626 46 SDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAE 124 (439)
Q Consensus 46 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~ 124 (439)
.+...|.+.+++|+.++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|+
T Consensus 20 ~~~~~~~~~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~ee 99 (404)
T 2jif_A 20 FQSMAPLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEE 99 (404)
T ss_dssp ----CCTTCCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHH
Confidence 345567778999999999999999999999988888888999999999999999999977 9999999999999999999
Q ss_pred HhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEE
Q 013626 125 IARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKR 204 (439)
Q Consensus 125 la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~ 204 (439)
++++|+++++.+.+|..++..+|..+|+++||++|||++.+|+ ++|+++|||++|||+..+.|+|++++|||+|||+|.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~ 178 (404)
T 2jif_A 100 LAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKM 178 (404)
T ss_dssp HHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEE
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEE
Confidence 9999999988888887666778899999999999999999986 889999999999999999999999999999999999
Q ss_pred eecCCCCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHH
Q 013626 205 WIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (439)
Q Consensus 205 ~is~a~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~ 280 (439)
||||+..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++...
T Consensus 179 ~is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~ 258 (404)
T 2jif_A 179 WISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYA 258 (404)
T ss_dssp EEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred eecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHH
Confidence 99999999999999998532 46899999999999999999999999999999999999999999999875 567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 013626 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360 (439)
Q Consensus 281 ~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 360 (439)
...++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++.+......
T Consensus 259 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~ 338 (404)
T 2jif_A 259 IGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKE 338 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999988766667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 361 ~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.+|++.+++
T Consensus 339 ~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~~~ 402 (404)
T 2jif_A 339 ASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDA 402 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999999999999999998864
No 12
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.2e-71 Score=554.37 Aligned_cols=374 Identities=29% Similarity=0.407 Sum_probs=354.4
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCC---CCHHHHHHHHHHHh
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG---HSVTGAAIAIAEIA 126 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g---~~~~~~~~v~e~la 126 (439)
|++.+++++.++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++.+ ++|||.| +++.+...++|+++
T Consensus 1 M~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~ 80 (383)
T 1buc_A 1 MDFNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELA 80 (383)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHH
Confidence 6677999999999999999998899998888899999999999999999999977 9999999 99999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe-CCEEEEEeEEEe
Q 013626 127 RVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRW 205 (439)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~LnG~K~~ 205 (439)
++|+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|+++ +|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~ 160 (383)
T 1buc_A 81 KYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIF 160 (383)
T ss_dssp HHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEE
T ss_pred hhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEec
Confidence 9999998877788656778899999999999999999999999999999999999999999999999 999999999999
Q ss_pred ecCCCCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHH
Q 013626 206 IGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (439)
Q Consensus 206 is~a~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (439)
|||+..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++....
T Consensus 161 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~ 240 (383)
T 1buc_A 161 ITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAM 240 (383)
T ss_dssp EETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHH
T ss_pred cCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHH
Confidence 9999999999999998643 46899999999999999999999999999999999999999999999875 5677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhh
Q 013626 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHA 361 (439)
Q Consensus 282 ~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (439)
..++..|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++.+......+
T Consensus 241 ~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~ 320 (383)
T 1buc_A 241 MTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDA 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999887667788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 362 SLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 362 ~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
+++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++.++|
T Consensus 321 ~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 383 (383)
T 1buc_A 321 AIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999875
No 13
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-71 Score=551.55 Aligned_cols=369 Identities=33% Similarity=0.491 Sum_probs=350.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCch
Q 013626 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASC 132 (439)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~ 132 (439)
.+++|+.++++.+++|+++++.|.+.+.++.+.+|+++|++|.+.||+++.+ ++|||.|+++.+...++|+++++|+++
T Consensus 2 ~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~ 81 (372)
T 2dvl_A 2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSV 81 (372)
T ss_dssp -CCHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHH
Confidence 4789999999999999998888888888888999999999999999999977 999999999999999999999999998
Q ss_pred hHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCC
Q 013626 133 STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFA 212 (439)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~a 212 (439)
++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+..|
T Consensus 82 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~A 161 (372)
T 2dvl_A 82 AVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHA 161 (372)
T ss_dssp HHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred HHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcC
Confidence 88888775466778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHH
Q 013626 213 DVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMV 291 (439)
Q Consensus 213 d~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~ 291 (439)
||++|+|++++ ++++|+||++.|||++.+.|+++|++++++++|.||||+||++++++.. .++......++.+|+.+
T Consensus 162 d~~~v~a~~~~--g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~ 239 (372)
T 2dvl_A 162 HLYVVMARTEK--GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGV 239 (372)
T ss_dssp SEEEEEEEETT--EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCC--CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999864 7899999999999999999999999999999999999999999999875 56777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHH
Q 013626 292 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITAR 371 (439)
Q Consensus 292 aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~ 371 (439)
++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.+++++++++++++++.++.+.+....++++|.++++.
T Consensus 240 aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~ 319 (372)
T 2dvl_A 240 AAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAA 319 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998876667789999999999
Q ss_pred HHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 372 ARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 372 a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.+|++.+++
T Consensus 320 a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 320 AVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp HHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999875
No 14
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=1.4e-71 Score=557.12 Aligned_cols=374 Identities=21% Similarity=0.315 Sum_probs=353.8
Q ss_pred cccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhc
Q 013626 49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIAR 127 (439)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~ 127 (439)
..++..+++|++++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|++++
T Consensus 23 ~~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~ 102 (403)
T 3r7k_A 23 VAPEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILA 102 (403)
T ss_dssp --CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 445677899999999999999999999999889999999999999999999999977 9999999999999999999999
Q ss_pred c-CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEee
Q 013626 128 V-DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206 (439)
Q Consensus 128 ~-d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~i 206 (439)
+ |+++++.+.+|..++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~v 182 (403)
T 3r7k_A 103 AGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFI 182 (403)
T ss_dssp TTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEE
T ss_pred cCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEcc
Confidence 8 888887776565567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEecCC--CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHH
Q 013626 207 GNSTFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (439)
Q Consensus 207 s~a~~ad~~~v~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~ 283 (439)
||+..|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||++++++.. .++......
T Consensus 183 s~a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 262 (403)
T 3r7k_A 183 TSGVRADFVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQ 262 (403)
T ss_dssp ETTTTCSEEEEEEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHT
T ss_pred cCCccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHH
Confidence 999999999999998652 47899999999999999999999999999999999999999999999876 567888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhh
Q 013626 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (439)
Q Consensus 284 ~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 363 (439)
++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.+++++++++++++++.++++......+++
T Consensus 263 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~ 342 (403)
T 3r7k_A 263 FQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSM 342 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777778999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHH
Q 013626 364 GKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 422 (439)
Q Consensus 364 aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~ 422 (439)
+|.++++.+.++++.++|+|||+||+++++++|+|||+++..+++|++++++.+|+|.+
T Consensus 343 aK~~a~~~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 343 AKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999976
No 15
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=2.5e-71 Score=554.20 Aligned_cols=376 Identities=27% Similarity=0.402 Sum_probs=354.4
Q ss_pred cccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhc
Q 013626 49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIAR 127 (439)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~ 127 (439)
..|++.+++++.++++.+++|+++++.|...+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|++++
T Consensus 10 ~~m~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~ 89 (396)
T 1egd_A 10 LGFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAY 89 (396)
T ss_dssp CEEECCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHh
Confidence 358888999999999999999998899888888888999999999999999999977 9999999999999999999999
Q ss_pred cCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeec
Q 013626 128 VDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (439)
Q Consensus 128 ~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is 207 (439)
+|+++++.+ .|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|||
T Consensus 90 ~~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s 168 (396)
T 1egd_A 90 GCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWIT 168 (396)
T ss_dssp HCHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred hCccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEccc
Confidence 999988776 6665666678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEecCC------CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHH
Q 013626 208 NSTFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (439)
Q Consensus 208 ~a~~ad~~~v~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~ 280 (439)
|+..|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++...
T Consensus 169 ~~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~ 248 (396)
T 1egd_A 169 NGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 248 (396)
T ss_dssp TTTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHH
T ss_pred CCcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHH
Confidence 99999999999998643 46889999999999999999999999999999999999999999999875 567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 013626 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGH 360 (439)
Q Consensus 281 ~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 360 (439)
...++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.++.+......
T Consensus 249 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~ 328 (396)
T 1egd_A 249 MGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYY 328 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999987766677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 361 ASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 361 ~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..|++.+++.
T Consensus 329 ~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~ 393 (396)
T 1egd_A 329 ASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999874
No 16
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=3.2e-71 Score=552.52 Aligned_cols=375 Identities=30% Similarity=0.440 Sum_probs=351.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccC
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (439)
|++.+++++.++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|+++++|
T Consensus 2 ~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 81 (391)
T 2vig_A 2 QSVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGC 81 (391)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhc
Confidence 5667899999999999999998899988888888999999999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCC
Q 013626 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (439)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a 209 (439)
+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 161 (391)
T 2vig_A 82 ASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNA 161 (391)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCC
Confidence 99988888875456678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHH
Q 013626 210 TFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLA 285 (439)
Q Consensus 210 ~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~ 285 (439)
..|||++|+|+++++ .++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++|+.. .++......++
T Consensus 162 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 241 (391)
T 2vig_A 162 WEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLD 241 (391)
T ss_dssp TTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHH
T ss_pred CcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHH
Confidence 999999999998632 37899999999999999999999999999999999999999999999875 56777778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHH
Q 013626 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGK 365 (439)
Q Consensus 286 ~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK 365 (439)
.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.++.+......++++|
T Consensus 242 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK 321 (391)
T 2vig_A 242 MGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAK 321 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776666789999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 366 SWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 366 ~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++.+++.
T Consensus 322 ~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~~ 381 (391)
T 2vig_A 322 LAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRS 381 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998764
No 17
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=3.5e-71 Score=551.80 Aligned_cols=371 Identities=27% Similarity=0.379 Sum_probs=346.3
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCC
Q 013626 52 DDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDA 130 (439)
Q Consensus 52 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~ 130 (439)
++.++++++++++.+++|+++++.|.+.+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|+++++|+
T Consensus 13 ~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~ 92 (387)
T 3nf4_A 13 RLLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWA 92 (387)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCc
Confidence 566899999999999999999899999999999999999999999999999977 9999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCC
Q 013626 131 SCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNST 210 (439)
Q Consensus 131 s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~ 210 (439)
++++.+.+|. ++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|+||+.
T Consensus 93 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 171 (387)
T 3nf4_A 93 SVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGG 171 (387)
T ss_dssp HHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTT
T ss_pred hHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCc
Confidence 9998887776 566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEecC-CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHH
Q 013626 211 FADVLVIFARNTT-TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (439)
Q Consensus 211 ~ad~~~v~a~~~~-~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r 288 (439)
.||+++|+|++++ .+++++|+||++.|||++.+.|+++|++++++++|.||||+||++++++.. .++......++.+|
T Consensus 172 ~Ad~~~v~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r 251 (387)
T 3nf4_A 172 KADFYTLFARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGR 251 (387)
T ss_dssp TCSEEEEEEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH
T ss_pred ccCEEEEEEEeCCCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 9999999999863 367999999999999999999999999999999999999999999999876 56777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHH
Q 013626 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWI 368 (439)
Q Consensus 289 ~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~ 368 (439)
+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.++++......++++|.++
T Consensus 252 ~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~aK~~a 331 (387)
T 3nf4_A 252 LGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTA 331 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877777889999999
Q ss_pred HHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHh
Q 013626 369 TARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVT 423 (439)
Q Consensus 369 ~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~l 423 (439)
++.+.++++.++|+|||+||+++++++|+|||+++..+++|++++++.+|+|.++
T Consensus 332 ~~~a~~~~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~ 386 (387)
T 3nf4_A 332 TDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT 386 (387)
T ss_dssp HHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhCcHhhcCCCcHHHHHhHhhcCeeecChHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999875
No 18
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=2e-70 Score=545.90 Aligned_cols=370 Identities=26% Similarity=0.381 Sum_probs=347.9
Q ss_pred cc-cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 51 FD-DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 51 ~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
|+ +.+++++.++++.+++|+.+++.|.+.+.++.+.+|+++|++|.+.||+++.+ ++|||.|+++.+...++|+++++
T Consensus 5 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~ 84 (385)
T 2pg0_A 5 MTARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKV 84 (385)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 55 66899999999999999999899988888888999999999999999999977 99999999999999999999999
Q ss_pred C-CchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeec
Q 013626 129 D-ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIG 207 (439)
Q Consensus 129 d-~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is 207 (439)
| +++++.+ |..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|||
T Consensus 85 ~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s 162 (385)
T 2pg0_A 85 GSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFIT 162 (385)
T ss_dssp CGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEET
T ss_pred CCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEeccc
Confidence 9 8887654 655566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEecCC-----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHH
Q 013626 208 NSTFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTS 281 (439)
Q Consensus 208 ~a~~ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~ 281 (439)
|+..|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++....
T Consensus 163 ~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~ 242 (385)
T 2pg0_A 163 NGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLM 242 (385)
T ss_dssp TTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHH
T ss_pred CCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHH
Confidence 99999999999998633 26899999999999999999999999999999999999999999999875 5677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhh
Q 013626 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHA 361 (439)
Q Consensus 282 ~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 361 (439)
..++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++++......+
T Consensus 243 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~ 322 (385)
T 2pg0_A 243 EKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEV 322 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999887667788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHH
Q 013626 362 SLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREV 422 (439)
Q Consensus 362 ~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~ 422 (439)
+++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++.+
T Consensus 323 ~~aK~~a~e~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 323 SMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999964
No 19
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.5e-71 Score=550.43 Aligned_cols=372 Identities=27% Similarity=0.415 Sum_probs=353.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCH--HHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccC
Q 013626 53 DLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPF--HVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (439)
Q Consensus 53 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (439)
+.+++|+.++++.+++|+++++.|.+.+.++.+.+|. ++|++|.+.||+++.+ ++|||.|+++.+...++|+++++|
T Consensus 11 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~ 90 (394)
T 1ivh_A 11 NGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRAS 90 (394)
T ss_dssp GTCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhc
Confidence 5689999999999999999989998888888899999 9999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCC
Q 013626 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (439)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a 209 (439)
+++++.+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||+
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~ 170 (394)
T 1ivh_A 91 GAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170 (394)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETG
T ss_pred hhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCC
Confidence 99998888876566788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC-----CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHH
Q 013626 210 TFADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKV 283 (439)
Q Consensus 210 ~~ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~ 283 (439)
..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++......
T Consensus 171 ~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 250 (394)
T 1ivh_A 171 PDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSG 250 (394)
T ss_dssp GGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHH
T ss_pred CcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHH
Confidence 999999999998643 36899999999999999999999999999999999999999999999875 567777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhh
Q 013626 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASL 363 (439)
Q Consensus 284 ~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 363 (439)
++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+......+++
T Consensus 251 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~ 330 (394)
T 1ivh_A 251 LDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAG 330 (394)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999988766677899
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 364 GKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 364 aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
+|.++++.+.++++.++|+|||+||+++++++|+|||+++..+++|++++++..+++.+++
T Consensus 331 aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~ 391 (394)
T 1ivh_A 331 VILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNA 391 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999876
No 20
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2e-70 Score=547.07 Aligned_cols=374 Identities=26% Similarity=0.368 Sum_probs=350.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
.|++.+++|+.++++.+++|+.+++.|.+.+.++.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|+++++
T Consensus 14 ~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 93 (393)
T 1rx0_A 14 DPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATG 93 (393)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence 34566899999999999999999998988888888999999999999999999977 99999999999999999999999
Q ss_pred CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecC
Q 013626 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGN 208 (439)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~ 208 (439)
|+++++.+.+|. ++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++|||+|||+|.||||
T Consensus 94 ~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 172 (393)
T 1rx0_A 94 CTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISG 172 (393)
T ss_dssp CHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecC
Confidence 999888777775 5667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEecCC--CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHH
Q 013626 209 STFADVLVIFARNTTT--NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLA 285 (439)
Q Consensus 209 a~~ad~~~v~a~~~~~--~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~ 285 (439)
+..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++......+.
T Consensus 173 a~~Ad~~~v~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~ 252 (393)
T 1rx0_A 173 AGESDIYVVMCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLN 252 (393)
T ss_dssp TTTCSEEEEEEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred CccCCEEEEEEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHH
Confidence 9999999999998642 36899999999999999999999999999999999999999999999875 56777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ChhhhhhH
Q 013626 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM-TPGHASLG 364 (439)
Q Consensus 286 ~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~a 364 (439)
.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.. ....++++
T Consensus 253 ~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~a 332 (393)
T 1rx0_A 253 GGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMA 332 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999988643 34568899
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhC
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTG 424 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg 424 (439)
|.++++.+.++++.++|+|||+||+++++++|+|||+++..+++|++++++.+|+|.+++
T Consensus 333 K~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 392 (393)
T 1rx0_A 333 KLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeeecCCChHHHHHHhccCceecCChHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999874
No 21
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=1.8e-70 Score=548.50 Aligned_cols=376 Identities=27% Similarity=0.451 Sum_probs=354.6
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCC-HHHHHHHHhccccCCcc-ccCCCCCC--CHHHHHHHHHHHh
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFP-FHVIPKLGALRVAGGTI-KGYGCPGH--SVTGAAIAIAEIA 126 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gl~~~~~-~~~GG~g~--~~~~~~~v~e~la 126 (439)
|++.++++++++++.+++|+++++.|.+.+.++.+.+| +++|++|++.||+++.+ ++|||.|+ ++.+...++|+++
T Consensus 1 M~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela 80 (397)
T 3mpi_A 1 MDFNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIA 80 (397)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999 99999999999999977 99999999 9999999999999
Q ss_pred ccCCchhHHHHHHhhHHHH-HHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEe
Q 013626 127 RVDASCSTFILVHSSLAML-TIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRW 205 (439)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~-~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~ 205 (439)
++|+++++.+.+|. ++.. .|..+|+++||++|||++.+|+.++|+++|||++|||+..+.|+|++++|||+|||+|.|
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~ 159 (397)
T 3mpi_A 81 RGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTW 159 (397)
T ss_dssp HHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEE
T ss_pred hhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEe
Confidence 99999998888774 4555 889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCEEEEEEEecCC---CCeEEEEE-eCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHH
Q 013626 206 IGNSTFADVLVIFARNTTT---NQINGYLV-KKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT 280 (439)
Q Consensus 206 is~a~~ad~~~v~a~~~~~---~~~~~flV-~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~ 280 (439)
+||+..|||++|+|+++++ .++.+|+| |++.|||++ +.|+++|++++++++|.||||+||++++++.. .++...
T Consensus 160 ~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~ 238 (397)
T 3mpi_A 160 ISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238 (397)
T ss_dssp EETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHH
T ss_pred eCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHH
Confidence 9999999999999998642 47899999 999999999 99999999999999999999999999999876 567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCChh
Q 013626 281 SKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-AMTPG 359 (439)
Q Consensus 281 ~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 359 (439)
...++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++++++++++++++.++.+ .....
T Consensus 239 ~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~ 318 (397)
T 3mpi_A 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGL 318 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999987 55566
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHH-HHHhCCCCCC
Q 013626 360 HASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTG-REVTGIASFK 429 (439)
Q Consensus 360 ~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~-r~~lg~~~~~ 429 (439)
.++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++.+|+ |.+ |+|..+
T Consensus 319 ~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l-gl~~~~ 388 (397)
T 3mpi_A 319 DVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL-GVRKAN 388 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH-TSSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc-CCCccc
Confidence 789999999999999999999999999999999999999999999999999999999999 766 987653
No 22
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=2.3e-70 Score=541.69 Aligned_cols=360 Identities=21% Similarity=0.286 Sum_probs=331.7
Q ss_pred HHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhH
Q 013626 64 MKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSL 142 (439)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~ 142 (439)
+.+++|+++++.|.+.+.|+.+.+|+++|++|.+.||+++.+ ++|||.|+++.+...++|+++++|+++++.+.+|..+
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~ 81 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA 81 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 567899999999988888888999999999999999999977 9999999999999999999999999998887777655
Q ss_pred HHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEEEEEec
Q 013626 143 AMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT 222 (439)
Q Consensus 143 ~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~ 222 (439)
+...|. +|+++||++|||++.+|+ ++|+++|||++|||+..+.|+|++++|||+|||+|.||||+..|||++|+|+++
T Consensus 82 ~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~ 159 (366)
T 1r2j_A 82 AWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQE 159 (366)
T ss_dssp HHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCS
T ss_pred HHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeC
Confidence 667788 999999999999999999 999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHH-HHHHHHHHHHHHHHHHHHHH
Q 013626 223 TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDT-SKVLAVSRVMVAWQPIGISM 300 (439)
Q Consensus 223 ~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~-~~~~~~~r~~~aa~~lG~a~ 300 (439)
+ +++++|+||++.|||++.+.|+++|+|++++++|.||||+||++++++.. .++... ...++.+|+.+++.++|+++
T Consensus 160 ~-~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~ 238 (366)
T 1r2j_A 160 D-GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILR 238 (366)
T ss_dssp S-SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4 37899999999999999999999999999999999999999999999865 567666 77888999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCChhhhhhHHHHHHHHHHHHHHHH
Q 013626 301 GVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-AMTPGHASLGKSWITARARETVALG 379 (439)
Q Consensus 301 ~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~aK~~~~~~a~~~~~~a 379 (439)
++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++++ ......++++|.++++.+.++++.+
T Consensus 239 ~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~~~aK~~a~~~a~~~~~~a 318 (366)
T 1r2j_A 239 ACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATA 318 (366)
T ss_dssp HHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876 5556678999999999999999999
Q ss_pred HHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCC
Q 013626 380 RELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIA 426 (439)
Q Consensus 380 ~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~ 426 (439)
+|+|||+||+++++++|+|||+++..+++|++++++..+++.++|+|
T Consensus 319 ~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lgl~ 365 (366)
T 1r2j_A 319 AQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALALP 365 (366)
T ss_dssp HHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCC
T ss_pred HHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999986
No 23
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=3.2e-70 Score=549.65 Aligned_cols=378 Identities=20% Similarity=0.226 Sum_probs=341.6
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhc------------------CCCHHHHHHHHhccccCCcc-ccC
Q 013626 48 YYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA------------------EFPFHVIPKLGALRVAGGTI-KGY 108 (439)
Q Consensus 48 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~Gl~~~~~-~~~ 108 (439)
|..|++.+++++.++++.+++|+++++.|...+.++.. .+|+++|++|++.||+++.+ ++|
T Consensus 2 ~~~M~~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~ 81 (415)
T 4hr3_A 2 PGSMDFAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPE 81 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHH
Confidence 44588899999999999999999998888877766543 26789999999999999987 999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCchhHHHH-HHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCC-CCCCcCCc
Q 013626 109 GCPGHSVTGAAIAIAEIARVDASCSTFIL-VHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASAL 186 (439)
Q Consensus 109 GG~g~~~~~~~~v~e~la~~d~s~~~~~~-~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~ 186 (439)
||.|+++.+...++|+++++|.+..++.. .+...+...|..+|+++||++|||++++|+.++|+++|||+ +|||+..+
T Consensus 82 GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~ 161 (415)
T 4hr3_A 82 LGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNM 161 (415)
T ss_dssp TSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGC
T ss_pred CCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhC
Confidence 99999999999999999998755433221 12222346789999999999999999999999999999999 99999999
Q ss_pred ceEEEEeCCEEEEEeEEEeecCCCC--CCEEEEEEEecCC----CCeEEEEEeCCCCCeeeecccccccccccc--ceeE
Q 013626 187 NTTATKVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ--NGDI 258 (439)
Q Consensus 187 ~t~A~~~~~g~~LnG~K~~is~a~~--ad~~~v~a~~~~~----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~--~~~v 258 (439)
.|+|++++|||+|||+|.||||+.+ |||++|+|+++++ +++++|+||++.|||++.+.|+++|+++++ +++|
T Consensus 162 ~t~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v 241 (415)
T 4hr3_A 162 AATAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVV 241 (415)
T ss_dssp CCEEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEE
T ss_pred eeEEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEE
Confidence 9999999999999999999999966 9999999998643 579999999999999999999999999987 9999
Q ss_pred EEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHH
Q 013626 259 LLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNI 337 (439)
Q Consensus 259 ~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~ 337 (439)
.||||+||++++|+.. .++......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+++
T Consensus 242 ~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~ 321 (415)
T 4hr3_A 242 SFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARIAI 321 (415)
T ss_dssp EEEEEEEEGGGBSSCTTCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSTTHHHHHHHHHHHH
T ss_pred EEccEEECHHHcCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHhHHHHHHHHHHHHHH
Confidence 9999999999999876 577778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc--CCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHH
Q 013626 338 QAMILVGWRLCKLYEK--GAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINT 415 (439)
Q Consensus 338 ~a~~~~~~~~~~~~~~--~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~ 415 (439)
++++++++++++.+++ +......++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++
T Consensus 322 ~aar~~~~~aa~~~d~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~ 401 (415)
T 4hr3_A 322 NQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHR 401 (415)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHHHH
Confidence 9999999999999987 44556678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 013626 416 LVTGREVTGI 425 (439)
Q Consensus 416 ~~i~r~~lg~ 425 (439)
.++++.++|.
T Consensus 402 ~~ia~~~l~~ 411 (415)
T 4hr3_A 402 GVVARIELAK 411 (415)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 24
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=3.1e-69 Score=561.38 Aligned_cols=373 Identities=26% Similarity=0.433 Sum_probs=344.1
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhc-CCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhcc
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKA-EFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARV 128 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~ 128 (439)
....+++||+++++.+++|+++++.|...+.++.+ .+|+++|++|++.||+++.+ ++|||.|+++.+...++|+++++
T Consensus 29 ~p~~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~ 108 (597)
T 3owa_A 29 TPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRA 108 (597)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGG
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHcc
Confidence 34568999999999999999999999888777654 68899999999999999977 99999999999999999999998
Q ss_pred CCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEEeEEEee
Q 013626 129 DASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILEGQKRWI 206 (439)
Q Consensus 129 d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~LnG~K~~i 206 (439)
+ +.+..+..|.+++...|..+|+++||++|||++++|+.++|+++|||++|||+.+++|+|+++ +|+|+|||+|.||
T Consensus 109 ~-~~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~i 187 (597)
T 3owa_A 109 G-GFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWI 187 (597)
T ss_dssp T-HHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEE
T ss_pred c-hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEe
Confidence 6 444555666666666788999999999999999999999999999999999999999999995 4569999999999
Q ss_pred cCCCCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHH
Q 013626 207 GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLA 285 (439)
Q Consensus 207 s~a~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~ 285 (439)
||+..|||++|+|++++ +++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+.. .++......++
T Consensus 188 s~a~~Ad~~lV~Art~~-~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~ 266 (597)
T 3owa_A 188 TNSAFADVFIVYAKIDG-EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILN 266 (597)
T ss_dssp ETTTTCSEEEEEEEETT-TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHH
T ss_pred CCCccCCEEEEEEEeCC-CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhH
Confidence 99999999999999864 57999999999999999999999999999999999999999999999876 57788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------
Q 013626 286 VSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAM--------- 356 (439)
Q Consensus 286 ~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~--------- 356 (439)
.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.+++++++++++++++.+|++..
T Consensus 267 ~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~ 346 (597)
T 3owa_A 267 IGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKD 346 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998886421
Q ss_pred ----------ChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 357 ----------TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 357 ----------~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
....++++|.++++.+.++++.++|+|||+||+.++|++|+|||+++..+++|++++++..+++.+++.
T Consensus 347 ~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~Ia~~ll~~ 425 (597)
T 3owa_A 347 GKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRK 425 (597)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHHHHHHHHH
Confidence 234578999999999999999999999999999999999999999999999999999999999988864
No 25
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=6.7e-68 Score=551.51 Aligned_cols=370 Identities=28% Similarity=0.410 Sum_probs=342.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHH-hcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCc
Q 013626 54 LLTSEEQAVRMKVRECMEKEIAPIMAEYWE-KAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDAS 131 (439)
Q Consensus 54 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s 131 (439)
.+++|++++++.+++|+++++.|...+.+. ...+|+++|++|++.||+++.+ ++|||.|+++.+...++|++ ..|++
T Consensus 27 ~~~~e~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s 105 (577)
T 2z1q_A 27 DFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGG 105 (577)
T ss_dssp GCCHHHHHHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCT
T ss_pred CCCHHHHHHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhccc
Confidence 368999999999999999988877544432 2378999999999999999977 99999999999999999999 77999
Q ss_pred hhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEE--eCCEEEEEeEEEeecCC
Q 013626 132 CSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATK--VEGGWILEGQKRWIGNS 209 (439)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~--~~~g~~LnG~K~~is~a 209 (439)
+++.+.+|.+++..+|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++ ++|+|+|||+|+||||+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a 185 (577)
T 2z1q_A 106 FSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNA 185 (577)
T ss_dssp HHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETT
T ss_pred HHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCC
Confidence 9988888876666789999999999999999999999999999999999999999999999 45689999999999999
Q ss_pred CCCCEEEEEEEecCCCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHH
Q 013626 210 TFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSR 288 (439)
Q Consensus 210 ~~ad~~~v~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r 288 (439)
+.||+++|+|++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||.+++|+.. .++......++.+|
T Consensus 186 ~~Ad~~~V~Ar~~g-~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R 264 (577)
T 2z1q_A 186 GFAHLFTVFAKVDG-EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGR 264 (577)
T ss_dssp TTCSEEEEEEEETT-TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHH
T ss_pred CccCEEEEEEEeCC-CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHH
Confidence 99999999999964 67999999999999999999999999999999999999999999999875 68888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------
Q 013626 289 VMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG-------------- 354 (439)
Q Consensus 289 ~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~-------------- 354 (439)
+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.+++++++++++++++.+|.+
T Consensus 265 ~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~ 344 (577)
T 2z1q_A 265 YKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGI 344 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCBCSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 355 AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 355 ~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
......++++|+++++.+.++++.|+|+|||+||+.+++++|+|||+++..+++|++++++.++++.+++.
T Consensus 345 ~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~~~l~~ 415 (577)
T 2z1q_A 345 EEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415 (577)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTTTSCHHHHHHHTTGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCChHHHHHhhCcceeeeCcHHHHHHHHHHHHHHHH
Confidence 12334678999999999999999999999999999999999999999999999999999999999988754
No 26
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=1.5e-67 Score=533.95 Aligned_cols=375 Identities=18% Similarity=0.229 Sum_probs=342.1
Q ss_pred ccccCCCHHHHHHHHHHHHHHHhhccccHHHHHH----hc-CCC--HHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHH
Q 013626 50 QFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWE----KA-EFP--FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIA 121 (439)
Q Consensus 50 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v 121 (439)
.|++.+++||+++++.+++|+++++.|...++++ .+ .+| +++|++|++.||+++.+ ++|||.|+++.+...+
T Consensus 2 ~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v 81 (438)
T 3mkh_A 2 AIDFHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAIL 81 (438)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHH
Confidence 5888999999999999999999999887766543 22 565 89999999999999977 9999999999999999
Q ss_pred HHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcC--cceeEEEecCCCCCC-----CcCCcceEEEEeC
Q 013626 122 IAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQL--NTIACWALTEPAYGS-----DASALNTTATKVE 194 (439)
Q Consensus 122 ~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g--~~~~~~a~tEp~~Gs-----d~~~~~t~A~~~~ 194 (439)
+|++++.|+++++.+..+. ++...|..+|+++ |++|||++++| +.++|+++|||++|| |+..++|+|++++
T Consensus 82 ~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g 159 (438)
T 3mkh_A 82 VEECYSVEPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEG 159 (438)
T ss_dssp HHHHHHHCHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEET
T ss_pred HHHHHhhChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeC
Confidence 9999999999887665553 4556778899999 99999999986 589999999999998 6889999999999
Q ss_pred CEEEEEeEEEeecCCC-----CCCEEEEEEEecC---------CCCeEEEEEeCCC-----CC-eeeecccccccccccc
Q 013626 195 GGWILEGQKRWIGNST-----FADVLVIFARNTT---------TNQINGYLVKKDA-----PG-LTVTKIENKIGLRIVQ 254 (439)
Q Consensus 195 ~g~~LnG~K~~is~a~-----~ad~~~v~a~~~~---------~~~~~~flV~~~~-----pG-v~v~~~~~~~Glrg~~ 254 (439)
|||+|||+|.||||+. .||+++|+|+++. .+++++|+||++. || |++.+.|+++|+|+++
T Consensus 160 ~g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~ 239 (438)
T 3mkh_A 160 DEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVS 239 (438)
T ss_dssp TEEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCC
T ss_pred CEEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCC
Confidence 9999999999999997 7999999999853 1468999999875 98 9999999999999999
Q ss_pred ceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-cccccchhHHHHHHH
Q 013626 255 NGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFG-APLAAFQINQQKLVQ 332 (439)
Q Consensus 255 ~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg-~pi~~~~~vq~~la~ 332 (439)
+++|.||||+||++++|+.. .++......++.+|+.+++.++|+++++++.+++|+++|+||| +||++||.+|++|++
T Consensus 240 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~la~ 319 (438)
T 3mkh_A 240 GPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSG 319 (438)
T ss_dssp CCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHHHHH
T ss_pred ceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeeccccHHHHHHHHH
Confidence 99999999999999999876 5777888889999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC----hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCccccc
Q 013626 333 MLGNIQAMILVGWRLCKLYEKGAMT----PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYE 408 (439)
Q Consensus 333 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~ 408 (439)
|.++++++|++++++++.++++... ...++++|+++++.+.++++.++|+|||+||+.+++++|+|||+++..+++
T Consensus 320 ~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i~~ 399 (438)
T 3mkh_A 320 VKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFD 399 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeeeec
Confidence 9999999999999999999987543 223678999999999999999999999999999999999999999999999
Q ss_pred chH-HHHHHHHHHHHhCCC
Q 013626 409 GTY-DINTLVTGREVTGIA 426 (439)
Q Consensus 409 G~~-~~~~~~i~r~~lg~~ 426 (439)
|++ ++++.+++|.+++..
T Consensus 400 Gt~~~v~~~~i~r~ll~~~ 418 (438)
T 3mkh_A 400 GGNVGIRRRHLQQLMLKPT 418 (438)
T ss_dssp SCTTTTHHHHHHHHHHSTT
T ss_pred CChHHHHHHHHHHHHHhcc
Confidence 999 999999999999974
No 27
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=6e-67 Score=527.44 Aligned_cols=377 Identities=19% Similarity=0.239 Sum_probs=329.9
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHhhccccHH---HHHHh-----cC-----CCHHHHHHHHhccccCCccccCCCCCC
Q 013626 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMA---EYWEK-----AE-----FPFHVIPKLGALRVAGGTIKGYGCPGH 113 (439)
Q Consensus 47 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~-----~~-----~~~~~~~~l~~~Gl~~~~~~~~GG~g~ 113 (439)
+...|++.+++|+.++++.+++|+++++.|... +.++. .. +++++|++|++.||+++.+++ |.|+
T Consensus 15 ~~~~m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~--G~g~ 92 (428)
T 2wbi_A 15 DTTGQLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA--VSGL 92 (428)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH--HHCC
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC--CCCC
Confidence 455688889999999999999999998877655 44432 22 457899999999999998844 7899
Q ss_pred CHHHHHHHHHHHhccCCch-hHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCC-CCCCcCCcceEEE
Q 013626 114 SVTGAAIAIAEIARVDASC-STFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPA-YGSDASALNTTAT 191 (439)
Q Consensus 114 ~~~~~~~v~e~la~~d~s~-~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~-~Gsd~~~~~t~A~ 191 (439)
++.+...++|+++++|.+. ++....+..++...|..+|+++||++|||++++|+.++|+++|||+ +|||+..+.|+|+
T Consensus 93 ~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~ 172 (428)
T 2wbi_A 93 SHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQ 172 (428)
T ss_dssp CHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEE
T ss_pred CHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEE
Confidence 9999999999999988532 2211112224556788999999999999999999999999999999 9999999999999
Q ss_pred EeCCEEEEEeEEEeecCCCC--CCEEEEEEEecCC-----CCeEEEEEeCCCCCeeeecccccccccccc---ceeEEEc
Q 013626 192 KVEGGWILEGQKRWIGNSTF--ADVLVIFARNTTT-----NQINGYLVKKDAPGLTVTKIENKIGLRIVQ---NGDILLK 261 (439)
Q Consensus 192 ~~~~g~~LnG~K~~is~a~~--ad~~~v~a~~~~~-----~~~~~flV~~~~pGv~v~~~~~~~Glrg~~---~~~v~f~ 261 (439)
+++|||+|||+|.||||+.. |||++|+|+++++ .++++|+||++.|||++.+.|+++|+++++ +++|.||
T Consensus 173 ~~~~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd 252 (428)
T 2wbi_A 173 RDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFN 252 (428)
T ss_dssp EETTEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEE
T ss_pred EeCCEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeC
Confidence 99999999999999999988 9999999998643 268999999999999999999999999995 9999999
Q ss_pred ceecCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHH
Q 013626 262 KVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAM 340 (439)
Q Consensus 262 ~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~ 340 (439)
||+||++++|+.. .++......+..+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++
T Consensus 253 dv~VP~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aa 332 (428)
T 2wbi_A 253 QVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKI 332 (428)
T ss_dssp EEEEEGGGBCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHH
T ss_pred ceEECHHHhcCCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999875 567777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-C-CCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHH
Q 013626 341 ILVGWRLCKLYEK-G-AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVT 418 (439)
Q Consensus 341 ~~~~~~~~~~~~~-~-~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i 418 (439)
|++++++++.+++ + ......++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+
T Consensus 333 r~~~~~aa~~~d~~g~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~i 412 (428)
T 2wbi_A 333 RLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAI 412 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHHHH
Confidence 9999999998876 2 3345568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 013626 419 GREVTGI 425 (439)
Q Consensus 419 ~r~~lg~ 425 (439)
++.+++.
T Consensus 413 a~~~l~~ 419 (428)
T 2wbi_A 413 ATMELRD 419 (428)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 28
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=6e-66 Score=538.08 Aligned_cols=368 Identities=25% Similarity=0.356 Sum_probs=337.8
Q ss_pred cccCCCHHHHH----HHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHH
Q 013626 51 FDDLLTSEEQA----VRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEI 125 (439)
Q Consensus 51 ~~~~l~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~l 125 (439)
+...+++++++ +++.+++|+++.+.| .+.++...+|+++|++|++.||+++.+ ++|||.|+++.+...++|++
T Consensus 42 ~p~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l 119 (607)
T 2uxw_A 42 YPSVLNEEQTQFLKELVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIV 119 (607)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhcCH--HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHH
Confidence 34456777754 889999999997654 345677899999999999999999977 99999999999999999999
Q ss_pred hccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeC--CEEEEEeEE
Q 013626 126 ARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVE--GGWILEGQK 203 (439)
Q Consensus 126 a~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~--~g~~LnG~K 203 (439)
+++|+++++.+.+|.+++...|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|++++ ++|+|||+|
T Consensus 120 ~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K 199 (607)
T 2uxw_A 120 GMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSK 199 (607)
T ss_dssp HHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEE
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEE
Confidence 999999998888876555678899999999999999999999999999999999999999999999963 489999999
Q ss_pred EeecCCCCCCEEEEEEEecC--------CCCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC-
Q 013626 204 RWIGNSTFADVLVIFARNTT--------TNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV- 274 (439)
Q Consensus 204 ~~is~a~~ad~~~v~a~~~~--------~~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~- 274 (439)
+||||++.||+++|+|++++ ..++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++++..
T Consensus 200 ~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g 279 (607)
T 2uxw_A 200 LWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVG 279 (607)
T ss_dssp EEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred EeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCC
Confidence 99999999999999999852 136899999999999999999999999999999999999999999999876
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 013626 275 NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKG 354 (439)
Q Consensus 275 ~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~ 354 (439)
.++......++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.+.++++++++++++..+|.+
T Consensus 280 ~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~vq~~La~~~~~~eaaral~~~aa~~~d~~ 359 (607)
T 2uxw_A 280 SGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQG 359 (607)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 57888888899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC-ChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHH
Q 013626 355 AM-TPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGR 420 (439)
Q Consensus 355 ~~-~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r 420 (439)
.. ....++++|+++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++++++..+++
T Consensus 360 ~~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~~l~r~~Rda~~~~i~eGt~~i~~~~ia~ 426 (607)
T 2uxw_A 360 ATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVAL 426 (607)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSHHHHHHHHGGGGTSSSCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCccHHHHHHHhcccceeeCChHHHHHHHHHH
Confidence 43 3457889999999999999999999999999999999999999999999999999999988843
No 29
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=7.4e-66 Score=521.48 Aligned_cols=378 Identities=19% Similarity=0.251 Sum_probs=342.5
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHh----cCCC--HHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHH
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEK----AEFP--FHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIA 123 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e 123 (439)
|++.+++++.++++.+++|+++++.|...+.++. +.+| +++|++|++.||+++.+ ++|||.|+++.+...++|
T Consensus 2 M~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~e 81 (439)
T 2c12_A 2 VDFKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILE 81 (439)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHH
Confidence 6778999999999999999999998877665542 3565 89999999999999977 999999999999999999
Q ss_pred HHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhh--cCcceeEEEecCCCCCC-----CcCCcceEEEEeCCE
Q 013626 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLA--QLNTIACWALTEPAYGS-----DASALNTTATKVEGG 196 (439)
Q Consensus 124 ~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~--~g~~~~~~a~tEp~~Gs-----d~~~~~t~A~~~~~g 196 (439)
++++.|+++++.+.+|. ++...|..+|+++||++|||++. +|+.++|+++|||++|| |+..+.|+|++++||
T Consensus 82 ela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g 160 (439)
T 2c12_A 82 ELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNE 160 (439)
T ss_dssp HHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTE
T ss_pred HHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCE
Confidence 99999999998777764 55567889999999999999999 69999999999999998 578899999999999
Q ss_pred EEEEeEEEeecCCC-----CCCEEEEEEEe-c----CC-------CCeEEEEEeCCCC------Ceeeeccccccccccc
Q 013626 197 WILEGQKRWIGNST-----FADVLVIFARN-T----TT-------NQINGYLVKKDAP------GLTVTKIENKIGLRIV 253 (439)
Q Consensus 197 ~~LnG~K~~is~a~-----~ad~~~v~a~~-~----~~-------~~~~~flV~~~~p------Gv~v~~~~~~~Glrg~ 253 (439)
|+|||+|.||||+. .||+++|+|++ + ++ .++++|+||++.| |+++.+.|+++|+|++
T Consensus 161 ~~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~ 240 (439)
T 2c12_A 161 WVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITT 240 (439)
T ss_dssp EEEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTC
T ss_pred EEEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCC
Confidence 99999999999997 89999999998 5 21 3689999999998 8889999999999999
Q ss_pred cceeEEEcceecCCCCCCCCC-CChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCcccccchhHHHHH
Q 013626 254 QNGDILLKKVFVPDEDRLPGV-NSFQ-DTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKE-RKQFGAPLAAFQINQQKL 330 (439)
Q Consensus 254 ~~~~v~f~~v~Vp~~~~l~~~-~~~~-~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~-R~~fg~pi~~~~~vq~~l 330 (439)
++++|.||||+||++++|+.. .++. .....++..|+.+++.++|+++++++.+++|+++ |++||+||+++|.+|++|
T Consensus 241 ~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~l 320 (439)
T 2c12_A 241 SGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKL 320 (439)
T ss_dssp CCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHH
T ss_pred CceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCeehhccHHHHHHH
Confidence 999999999999999999875 4566 6778889999999999999999999999999996 788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC----hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCccc
Q 013626 331 VQMLGNIQAMILVGWRLCKLYEKGAMT----PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYT 406 (439)
Q Consensus 331 a~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~ 406 (439)
++|.++++++|++++++++.++.+... ...++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+
T Consensus 321 a~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i 400 (439)
T 2c12_A 321 IDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPL 400 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhccee
Confidence 999999999999999999999876543 2357899999999999999999999999999999999999999999999
Q ss_pred ccchH-HHHHHHHHHHHhCCCCCCc
Q 013626 407 YEGTY-DINTLVTGREVTGIASFKP 430 (439)
Q Consensus 407 ~~G~~-~~~~~~i~r~~lg~~~~~~ 430 (439)
++|++ ++++..+++. ++.|.+.+
T Consensus 401 ~~G~~~~~~~~~i~~~-l~~~~~~~ 424 (439)
T 2c12_A 401 FDGGNIGLRRRQMQRV-MALEDYEP 424 (439)
T ss_dssp SSSCTTTTHHHHHHHH-HTSTTCCT
T ss_pred ecCChHHHHHHHHHHH-Hhcccchh
Confidence 99988 7999999874 55777754
No 30
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=9.7e-64 Score=499.59 Aligned_cols=367 Identities=18% Similarity=0.189 Sum_probs=326.1
Q ss_pred cccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCC-CCHHHHHHHHHHHh
Q 013626 49 YQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG-HSVTGAAIAIAEIA 126 (439)
Q Consensus 49 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g-~~~~~~~~v~e~la 126 (439)
.+|...+++||+++++.+++|+++ +.|.+.+.|+++.+|+++|++|.+.||+++.+ ++|||.| .++.+...++|+++
T Consensus 3 ~~~~~~lt~e~~~~~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~ 81 (395)
T 3mxl_A 3 ADLRAPLTPAGRTVVDLLAGVIPR-ISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLA 81 (395)
T ss_dssp CSSSSCCSHHHHHHHHHHTTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHH-HhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHH
Confidence 357788999999999999999986 88999999999999999999999999999977 9999999 89999999999999
Q ss_pred ccCCchhHHHHHHhhHHHHHH--hhcCCHHHH---hhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEe
Q 013626 127 RVDASCSTFILVHSSLAMLTI--ALCGSEEQK---QKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEG 201 (439)
Q Consensus 127 ~~d~s~~~~~~~~~~~~~~~l--~~~g~~~qk---~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG 201 (439)
++|+++++.+.+|...+...+ ..+|+++|| ++|||++.+|+.++|+++|||++|+ ..+. ++++|||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~---t~~~~g~~lnG 156 (395)
T 3mxl_A 82 EADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELH---SDGAGGWLLSG 156 (395)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEE---ECSSSCEEEEE
T ss_pred hhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceE---EecCCEEEEee
Confidence 999999988887765554443 356999999 9999999999999999999998753 2222 23788999999
Q ss_pred EEEeecCCCCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCC--CC-C
Q 013626 202 QKRWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--GV-N 275 (439)
Q Consensus 202 ~K~~is~a~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~--~~-~ 275 (439)
+|.||||+..|||++|+|+++++ .++++|+||++.|||++.+.|+++|+|++++++|+||||+||++++++ .. .
T Consensus 157 ~K~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~ 236 (395)
T 3mxl_A 157 RKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGA 236 (395)
T ss_dssp EEEEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSC
T ss_pred EEEEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCc
Confidence 99999999999999999998653 357899999999999999999999999999999999999999999997 32 4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Q 013626 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK-- 353 (439)
Q Consensus 276 ~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~-- 353 (439)
++.........+|+.+++.++|+++++++.+++|++ |+||+++|.+|++|++|.++++++|++++++++.++.
T Consensus 237 g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~ 311 (395)
T 3mxl_A 237 RRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GRGGEPRAGARALVAGLDTRLYALRTTVGAALTNADAAS 311 (395)
T ss_dssp CCTTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 444444445668999999999999999999999998 5689999999999999999999999999999998875
Q ss_pred ----CCCC------hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcc-cccchHHHHHHHHHHHH
Q 013626 354 ----GAMT------PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIY-TYEGTYDINTLVTGREV 422 (439)
Q Consensus 354 ----~~~~------~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~-~~~G~~~~~~~~i~r~~ 422 (439)
+... ...++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++.. +|+|++++++..++|.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia~~~ 391 (395)
T 3mxl_A 312 VDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQA 391 (395)
T ss_dssp TTCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHHHHH
T ss_pred cccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 1111 134578899999999999999999999999999999999999999999 99999999999999999
Q ss_pred hCCC
Q 013626 423 TGIA 426 (439)
Q Consensus 423 lg~~ 426 (439)
||+|
T Consensus 392 Lglp 395 (395)
T 3mxl_A 392 LGLD 395 (395)
T ss_dssp SCC-
T ss_pred hCCC
Confidence 9986
No 31
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=6.6e-63 Score=496.29 Aligned_cols=363 Identities=13% Similarity=0.053 Sum_probs=322.2
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccC
Q 013626 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (439)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (439)
.++.+++++.++++.+++|+++ +.|.+.+.|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|+++++|
T Consensus 14 ~~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~ 92 (414)
T 2or0_A 14 RENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALD 92 (414)
T ss_dssp ---------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 4466789999999999999987 88888888888999999999999999999977 999999999999999999999999
Q ss_pred CchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCC
Q 013626 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (439)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a 209 (439)
+++++.+.+|. ++...|..+|+++||++|+| +|+.++|+++| | .|+|++++|||+|||+|.||||+
T Consensus 93 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a 158 (414)
T 2or0_A 93 GASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSGT 158 (414)
T ss_dssp HHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETTG
T ss_pred hHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCCC
Confidence 99988777764 56678899999999999999 79999999887 4 57999999999999999999999
Q ss_pred CCCCEEEEEEEecC---CC---CeEEEEEeCCCCCeeee-ccccccccccccceeEEEcceecCCCCCCCCC--------
Q 013626 210 TFADVLVIFARNTT---TN---QINGYLVKKDAPGLTVT-KIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-------- 274 (439)
Q Consensus 210 ~~ad~~~v~a~~~~---~~---~~~~flV~~~~pGv~v~-~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-------- 274 (439)
..|||++|+|++++ .. ++++|+||++ ||++. +.|+++|++++++++|.||||+||++++|+..
T Consensus 159 ~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~ 236 (414)
T 2or0_A 159 DHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQ 236 (414)
T ss_dssp GGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHH
T ss_pred chhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCCC
Confidence 99999999999863 22 7899999997 89999 99999999999999999999999999999641
Q ss_pred -----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-CcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 275 -----NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF-GAPLAAFQINQQKLVQMLGNIQAMILVGWRLC 348 (439)
Q Consensus 275 -----~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~f-g~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~ 348 (439)
.++......+..+|+.+++.++|+++++++.+++|+++|+|| |+||+++|.+|++|++|.++++++++++++++
T Consensus 237 g~~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~~i~~~q~vq~~la~~~~~~~aar~l~~~aa 316 (414)
T 2or0_A 237 KEAGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIETA 316 (414)
T ss_dssp HHHTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSCBGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123334456778999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHH----cCCCC----hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccc-hHHHHHHHHH
Q 013626 349 KLYE----KGAMT----PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEG-TYDINTLVTG 419 (439)
Q Consensus 349 ~~~~----~~~~~----~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G-~~~~~~~~i~ 419 (439)
+.++ .+... ...++++|.++++.+.++++.++|+|||+||+++++++|+|||+++..+++| ++++++..++
T Consensus 317 ~~~~~~~~~g~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ia 396 (414)
T 2or0_A 317 DRFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHASA 396 (414)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHHHH
Confidence 9998 55542 2357899999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhCCCCCCc
Q 013626 420 REVTGIASFKP 430 (439)
Q Consensus 420 r~~lg~~~~~~ 430 (439)
+.++|+++..+
T Consensus 397 ~~~lg~~~~~~ 407 (414)
T 2or0_A 397 LTQLGGEPQGM 407 (414)
T ss_dssp HHHTTCCCCGG
T ss_pred HHHhCCCCCCC
Confidence 99999975433
No 32
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=2.6e-62 Score=495.65 Aligned_cols=371 Identities=19% Similarity=0.224 Sum_probs=325.3
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCC-CCHHHHHHHHHH
Q 013626 47 DYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPG-HSVTGAAIAIAE 124 (439)
Q Consensus 47 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g-~~~~~~~~v~e~ 124 (439)
++..|++.++++++++++.+++|+++ +.|.+.+.++.+.+|.++|++|++.||+++.+ ++|||.| .++.++..++|+
T Consensus 12 ~~~~m~~~lt~e~~~l~~~~r~~~~~-~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~ee 90 (439)
T 3m9v_A 12 STTGLYAPVTPAGRVLLDRLAAHLPR-IRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLA 90 (439)
T ss_dssp CCSTTSSCSSHHHHHHHHHHHTTHHH-HHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH-HhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHH
Confidence 45569999999999999999999986 88888889999999999999999999999987 9999999 899999999999
Q ss_pred HhccCCchhHHHHHHhhHHHHH--HhhcCCHHH---HhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEE
Q 013626 125 IARVDASCSTFILVHSSLAMLT--IALCGSEEQ---KQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWIL 199 (439)
Q Consensus 125 la~~d~s~~~~~~~~~~~~~~~--l~~~g~~~q---k~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~L 199 (439)
+++.|+++++.+.+|....... +..+|+++| |++|||++.+|+.++|+++|||+++ ...+.| +++|||+|
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~--~~~~~t---~~~~g~vl 165 (439)
T 3m9v_A 91 VARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTA--VTTLRP---DGAGGWLL 165 (439)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTC--CCEEEE---CSSSCEEE
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCC--CCceee---ccCCEEEE
Confidence 9999999988887776544443 346799999 9999999999999999999999853 333332 37889999
Q ss_pred EeEEEeecCCCCCCEEEEEEEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCC--CC
Q 013626 200 EGQKRWIGNSTFADVLVIFARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLP--GV 274 (439)
Q Consensus 200 nG~K~~is~a~~ad~~~v~a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~--~~ 274 (439)
||+|+||||+.+|||++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|.||||+||++++|+ ..
T Consensus 166 nG~K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~ 245 (439)
T 3m9v_A 166 SGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPV 245 (439)
T ss_dssp EEEEEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC-
T ss_pred EeEEEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCC
Confidence 9999999999999999999998643 468999999999999999999999999999999999999999999997 32
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 013626 275 -NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK 353 (439)
Q Consensus 275 -~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~ 353 (439)
.++.........+|+.+++.++|+++++++.+++|++ ++||+++|.+|++|++|.+++++++++++++++.++.
T Consensus 246 g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~ 320 (439)
T 3m9v_A 246 GARNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE-----RRPEPPQAAALTLVAEIDSRLYALRATAGSALTAADA 320 (439)
T ss_dssp -CCCGGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3443333445568999999999999999999999999 4689999999999999999999999999998877664
Q ss_pred ---C---------CCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcc-cccchHHHHHHHHHH
Q 013626 354 ---G---------AMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIY-TYEGTYDINTLVTGR 420 (439)
Q Consensus 354 ---~---------~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~-~~~G~~~~~~~~i~r 420 (439)
+ ......++++|+++++.+.++++.++|+|||+||+.+++++|+|||+++.. +|+|+++++...+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ak~~a~~~a~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i~~ 400 (439)
T 3m9v_A 321 LSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSA 400 (439)
T ss_dssp HHHCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHHHH
T ss_pred hccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHHHH
Confidence 1 111234567899999999999999999999999999999999999999999 999999999999999
Q ss_pred HHhCCCCC
Q 013626 421 EVTGIASF 428 (439)
Q Consensus 421 ~~lg~~~~ 428 (439)
.++|++..
T Consensus 401 ~~lg~~~~ 408 (439)
T 3m9v_A 401 QALGIERD 408 (439)
T ss_dssp HHTTC---
T ss_pred HHhCCchh
Confidence 99999754
No 33
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=2.4e-61 Score=482.06 Aligned_cols=352 Identities=14% Similarity=0.115 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHH
Q 013626 60 QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 138 (439)
Q Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~ 138 (439)
.++++.+++|+++ +.|.+.+.|+.+.+|+++|++|++.||+++.+ ++|||.|+++.+...++|+++++|+++++.+.+
T Consensus 10 ~~l~~~~~~~~~~-~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~ 88 (394)
T 2rfq_A 10 HEVMQRLDALLPT-LRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSI 88 (394)
T ss_dssp SHHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHH
Confidence 3688999999986 88888888888999999999999999999977 999999999999999999999999999887776
Q ss_pred HhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEEE
Q 013626 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIF 218 (439)
Q Consensus 139 ~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v~ 218 (439)
|. ++...|..+|+++||++|+| +|+.++|+++| | .|+|++++|||+|||+|.||||+..|||++|+
T Consensus 89 ~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~ 154 (394)
T 2rfq_A 89 IG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVLG 154 (394)
T ss_dssp HH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred HH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEEe
Confidence 64 56678889999999999999 79999999987 4 57999999999999999999999999999999
Q ss_pred EEecCCC---CeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCC--------C-----CChHHHHH
Q 013626 219 ARNTTTN---QINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG--------V-----NSFQDTSK 282 (439)
Q Consensus 219 a~~~~~~---~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~--------~-----~~~~~~~~ 282 (439)
|++++++ ++++|+||++ ||++.+.|+++|++++++++|.||||+||++++|+. . .++.....
T Consensus 155 a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~ 232 (394)
T 2rfq_A 155 GPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMP 232 (394)
T ss_dssp EEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSC
T ss_pred eeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCcccccc
Confidence 9984222 6899999997 899999999999999999999999999999999964 1 12334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC
Q 013626 283 VLAVSRVMVAWQPIGISMGVYDMCHRYLKERK---QFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE----KGA 355 (439)
Q Consensus 283 ~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~---~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~----~~~ 355 (439)
.+..+|+.+++.++|+++++++.+++|+++|+ |||+||+++|.+|++|++|.+++++++++++++++.++ .+.
T Consensus 233 ~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~g~ 312 (394)
T 2rfq_A 233 WGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGE 312 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67789999999999999999999999999999 99999999999999999999999999999999999998 655
Q ss_pred CCh----hhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccc-hHHHHHHHHHHHHhCCCCC
Q 013626 356 MTP----GHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEG-TYDINTLVTGREVTGIASF 428 (439)
Q Consensus 356 ~~~----~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G-~~~~~~~~i~r~~lg~~~~ 428 (439)
... ..++++|.++++.+.++++.++|+|||+||+++++++|+|||+++..+++| ++++++..+++.++|+|+.
T Consensus 313 ~~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg~~~~ 390 (394)
T 2rfq_A 313 EVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGLPIT 390 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchhHHHHHHHHHhCCCCC
Confidence 422 257899999999999999999999999999999999999999999999999 9999999999999998753
No 34
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=4.4e-61 Score=484.09 Aligned_cols=352 Identities=14% Similarity=0.098 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCcc-ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHH
Q 013626 60 QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVDASCSTFILV 138 (439)
Q Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~ 138 (439)
.++++.+++|+++ +.|.+.+.++.+.+|+++|++|.+.||+++.+ ++|||.|+++.+...++|+++++|+++++.+..
T Consensus 38 ~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~ 116 (422)
T 2jbr_A 38 VSMLEKIQQILPQ-IAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSL 116 (422)
T ss_dssp CCHHHHHHHHHHH-HHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 3578999999984 88888888888999999999999999999977 999999999999999999999999998887766
Q ss_pred HhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEEE
Q 013626 139 HSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIF 218 (439)
Q Consensus 139 ~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v~ 218 (439)
|. ++...|..+|+++||++|+|+ |+.++|+++| | .|+|++++|||+|||+|.||||+..|||++|+
T Consensus 117 ~~-~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~ 182 (422)
T 2jbr_A 117 LC-THSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIVG 182 (422)
T ss_dssp HH-HHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEEE
T ss_pred HH-HHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEEE
Confidence 63 566788999999999999996 8989999987 4 57999999999999999999999999999999
Q ss_pred EEecCC---CCeEEEEEeCCCCCeeeeccccccccccccceeEEEcceecCCCCCCCCC---------CC-----hHHHH
Q 013626 219 ARNTTT---NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV---------NS-----FQDTS 281 (439)
Q Consensus 219 a~~~~~---~~~~~flV~~~~pGv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~---------~~-----~~~~~ 281 (439)
|+++++ .++++|+||++ ||++.+.|+++|++++++++|.||||+||++++|+.. .+ +....
T Consensus 183 a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~ 260 (422)
T 2jbr_A 183 FNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYT 260 (422)
T ss_dssp EEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSS
T ss_pred EEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCccccc
Confidence 998632 26889999997 8999999999999999999999999999999999642 22 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCC
Q 013626 282 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERK--QFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYE----KGA 355 (439)
Q Consensus 282 ~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~--~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~----~~~ 355 (439)
..+..+|+.+++.++|+++++++.+++|+++|+ |||+||+++|.+|++|++|.++++++|++++++++.++ .+.
T Consensus 261 ~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~g~ 340 (422)
T 2jbr_A 261 PYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQ 340 (422)
T ss_dssp CHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567889999999999999999999999999998 99999999999999999999999999999999999998 555
Q ss_pred CC----hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcccccchH-HHHHHHHHHHHhCCCCC
Q 013626 356 MT----PGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIYTYEGTY-DINTLVTGREVTGIASF 428 (439)
Q Consensus 356 ~~----~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~-~~~~~~i~r~~lg~~~~ 428 (439)
.. ...++++|.++++.+.++++.++|+|||+||+.+++++|+|||+++..+++|++ ++++..+++.++|+|+.
T Consensus 341 ~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg~~~~ 418 (422)
T 2jbr_A 341 YPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGRELMGMEPD 418 (422)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHHHHhCCCCC
Confidence 42 235789999999999999999999999999999999999999999999999999 99999999999999754
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=5e-57 Score=475.46 Aligned_cols=372 Identities=23% Similarity=0.260 Sum_probs=317.5
Q ss_pred CCccccc-cCCC-HHHHHHHHHHHHHHHhhccccHHHHHHhcCCCHHHHHHHHhccccCCccccCCCCCCCHHHHHHHHH
Q 013626 46 SDYYQFD-DLLT-SEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIA 123 (439)
Q Consensus 46 ~~~~~~~-~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e 123 (439)
+|...|. +.++ +|+.++++.+++|+.+..... ...+....++++.|+.|++.|++...+++|| .+..+...+.+
T Consensus 16 f~~~~l~~~~~~~~e~~~lr~~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~p~e~G---~~~~~~~~v~e 91 (659)
T 1w07_A 16 FDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFE-KSNRARLSRKELFKSTLRKCAHAFKRIIELR---LNEEEAGRLRH 91 (659)
T ss_dssp SCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGC-CTTTTSSCHHHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred CCHHHHHHHHCCChHHHHHHHHHHHHHhcCcccc-cCCccCCChHHHHHHHHHHHHHHHHhHHHhC---CCchHHHHHHH
Confidence 4555543 3445 889999999999998752221 1111223677899999999999886667787 35677766655
Q ss_pred HHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--CCEEEEE-
Q 013626 124 EIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--EGGWILE- 200 (439)
Q Consensus 124 ~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~Ln- 200 (439)
++ +.+++ +.+|..+++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|||+||
T Consensus 92 ~~---~~~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLnt 166 (659)
T 1w07_A 92 FI---DQPAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHT 166 (659)
T ss_dssp HH---CCCCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEC
T ss_pred Hh---ccchh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcC
Confidence 55 45554 6677667778899999999999999999999999999999999999999999999998 6899999
Q ss_pred ----eEEEeecC-CCCCCEEEEEEEecCC---CCeEEEEEeC-C------CCCeeeeccccccc---cccccceeEEEcc
Q 013626 201 ----GQKRWIGN-STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIG---LRIVQNGDILLKK 262 (439)
Q Consensus 201 ----G~K~~is~-a~~ad~~~v~a~~~~~---~~~~~flV~~-~------~pGv~v~~~~~~~G---lrg~~~~~v~f~~ 262 (439)
|+|+|||| +..|||++|+|+++.+ .|+++|+||. + .|||++.++|+++| +++++++.|.|||
T Consensus 167 P~~~G~K~~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~ 246 (659)
T 1w07_A 167 PTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDH 246 (659)
T ss_dssp CSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESS
T ss_pred CCCCeEEEeecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEecc
Confidence 99999999 7899999999998643 3789999995 4 69999999999999 9999999999999
Q ss_pred eecCCCCCCCC------C-CCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc-------cccc
Q 013626 263 VFVPDEDRLPG------V-NSF------QDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------PLAA 322 (439)
Q Consensus 263 v~Vp~~~~l~~------~-~~~------~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~-------pi~~ 322 (439)
|+||++++|+. . .++ ......+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++
T Consensus 247 VrVP~~~lLg~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~ 326 (659)
T 1w07_A 247 VRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVID 326 (659)
T ss_dssp EEEEGGGBCCSSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGG
T ss_pred EEECHHHhcCCcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCcccchhc
Confidence 99999999984 2 222 23445678899999999999999999999999999999998 8999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCC-----ChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccC
Q 013626 323 FQINQQKLVQMLGNIQAMILVGWRLCKLYE-------KGAM-----TPGHASLGKSWITARARETVALGRELLGGNGILS 390 (439)
Q Consensus 323 ~~~vq~~la~~~~~~~a~~~~~~~~~~~~~-------~~~~-----~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~ 390 (439)
||.+|++|++|.+++++++++++++++.++ .+.. ....++++|+++++.+.++++.|+|+|||+||+.
T Consensus 327 ~q~vq~rLa~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~GG~G~~~ 406 (659)
T 1w07_A 327 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLW 406 (659)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGBG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999999999999999999999988764 2332 1345789999999999999999999999999999
Q ss_pred cCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCC
Q 013626 391 DFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIA 426 (439)
Q Consensus 391 ~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~ 426 (439)
+++++|+|||+++..+++|++++++..+++.+++..
T Consensus 407 ~~~l~r~~rda~~~~~~eG~~~v~~~~iar~lL~~~ 442 (659)
T 1w07_A 407 CSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTV 442 (659)
T ss_dssp GGSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHhcceeEEEeCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998753
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=3.9e-54 Score=442.50 Aligned_cols=327 Identities=18% Similarity=0.198 Sum_probs=288.9
Q ss_pred HHHHHHHHhccccCCcc---ccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhc
Q 013626 89 FHVIPKLGALRVAGGTI---KGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165 (439)
Q Consensus 89 ~~~~~~l~~~Gl~~~~~---~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~ 165 (439)
.++++.+.+.||+++.+ ++|||.+.......... ..+.+......++.+ +...|..+| ++||++|||++.+
T Consensus 89 ~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~~----~~~~~~~~p~~~t~~-~~~~L~~~g-~eqk~~~lp~l~s 162 (541)
T 3djl_A 89 HLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLHA----QVEAGSLCPITMTFA-ATPLLLQML-PAPFQDWTTPLLS 162 (541)
T ss_dssp HHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHHH----HHCSTTHHHHHHHHH-HHHHHHHHC-CGGGGGGHHHHTC
T ss_pred HHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHHH----HHHHhhhcHHHHHHH-HHHHHHHcC-HHHHHHHHHHHhC
Confidence 57889999999999954 68996544443333332 233333333344543 456778888 9999999999999
Q ss_pred Ccc-------------eeEEEecCCCCCCCcCCcceEEEEe-CCEEEEEeEEEeecCCCCCCEEEEEEEecCCCCeEEEE
Q 013626 166 LNT-------------IACWALTEPAYGSDASALNTTATKV-EGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYL 231 (439)
Q Consensus 166 g~~-------------~~~~a~tEp~~Gsd~~~~~t~A~~~-~~g~~LnG~K~~is~a~~ad~~~v~a~~~~~~~~~~fl 231 (439)
|+. ++|+++|||++|||+..++|+|+++ +|+|+|||+|+|+| +..|||++|+|+++ +++++|+
T Consensus 163 ge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~--~Gis~fl 239 (541)
T 3djl_A 163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA--GGLSCFF 239 (541)
T ss_dssp SCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET--TEEEEEE
T ss_pred CCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC--CceEEEE
Confidence 998 7899999999999999999999999 78999999999999 89999999999995 6899999
Q ss_pred EeCCCC-----CeeeeccccccccccccceeEEEcceecCCCCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 232 VKKDAP-----GLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDM 305 (439)
Q Consensus 232 V~~~~p-----Gv~v~~~~~~~Glrg~~~~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~ 305 (439)
||++.| ||++.++|+++|+|++++++|.||||+ +++++.. .++......++.+|+.+++.++|+++++++.
T Consensus 240 Vp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~ 316 (541)
T 3djl_A 240 VPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSL 316 (541)
T ss_dssp EESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 999999999999999999999999996 6888875 5788888899999999999999999999999
Q ss_pred HHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------hhhhhhHHHHHHHHHHHHHHHH
Q 013626 306 CHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMT------PGHASLGKSWITARARETVALG 379 (439)
Q Consensus 306 a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~aK~~~~~~a~~~~~~a 379 (439)
+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.++.+... ...++++|+++++.+.++++.+
T Consensus 317 a~~ya~~R~~fG~~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a 396 (541)
T 3djl_A 317 AIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEA 396 (541)
T ss_dssp HHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccCCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886432 2346789999999999999999
Q ss_pred HHHhCcccccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCCCC
Q 013626 380 RELLGGNGILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGIAS 427 (439)
Q Consensus 380 ~~~~Gg~g~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~ 427 (439)
+|+|||+||+.+++++|+|||+++..+++|++++++..++|.+++.+.
T Consensus 397 ~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~~~~~ 444 (541)
T 3djl_A 397 MEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAG 444 (541)
T ss_dssp HHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCTT
T ss_pred HHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999999999999999987753
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=1e-53 Score=449.66 Aligned_cols=367 Identities=20% Similarity=0.272 Sum_probs=299.1
Q ss_pred CCccccccCC--CHHHHHHHHHHHHHHHhhccccHHH--H-----HHhcCCCHHHHHHHHhccccCCccccCCCCCCCHH
Q 013626 46 SDYYQFDDLL--TSEEQAVRMKVRECMEKEIAPIMAE--Y-----WEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVT 116 (439)
Q Consensus 46 ~~~~~~~~~l--~~~~~~l~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~ 116 (439)
+|...|...| +++..++++++++++.+. |.... . ++..+...+..+.|.+. +++|||.+ ..
T Consensus 14 f~~~~l~~~l~g~~~~~~~r~~~~~~l~~~--p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~------~~~~~~~~--~~ 83 (661)
T 2ddh_A 14 FNPELITHILDGSPENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATMVKK------MREYGISD--PE 83 (661)
T ss_dssp SCHHHHHHHHHTSHHHHHHHHHHHHHHHTC--GGGCCSCGGGSCHHHHHHHHHHHHHHHHHH------HHHTTCCC--HH
T ss_pred CCHHHHHHHHCCChhHHHHHHHHHHHHhcC--cccccCCcCCCCHHHHHHHHHHHHHHHHHH------HHHcCCCC--ch
Confidence 4666676444 467889999999999874 32110 0 01111111222333332 26788765 33
Q ss_pred HHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcCCHHHHhhhhhhhhcCcceeEEEecCCCCCCCcCCcceEEEEe--C
Q 013626 117 GAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKV--E 194 (439)
Q Consensus 117 ~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~ 194 (439)
+. .+.+++...+ ++..+.+|..+++..|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|+++ +
T Consensus 84 ~~-~~~~~~~~~~--~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~ 160 (661)
T 2ddh_A 84 EI-MWFKNSVHRG--HPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKT 160 (661)
T ss_dssp HH-HHHHHHHHTT--CCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTT
T ss_pred HH-HHHHHHhccc--hhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCC
Confidence 33 3366765433 23445678767888999999999999999999999999999999999999999999999998 8
Q ss_pred CEEEEE-----eEEEeecC-CCCCCEEEEEEEecCC---CCeEEEEEeC-C------CCCeeeeccccccccccccceeE
Q 013626 195 GGWILE-----GQKRWIGN-STFADVLVIFARNTTT---NQINGYLVKK-D------APGLTVTKIENKIGLRIVQNGDI 258 (439)
Q Consensus 195 ~g~~Ln-----G~K~~is~-a~~ad~~~v~a~~~~~---~~~~~flV~~-~------~pGv~v~~~~~~~Glrg~~~~~v 258 (439)
|||+|| |+|+|||| +..|||++|+|++..+ .|+++|+||. + .|||++.++|+++|++++++++|
T Consensus 161 ~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v 240 (661)
T 2ddh_A 161 QEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYL 240 (661)
T ss_dssp TEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEE
T ss_pred CeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEE
Confidence 999999 99999999 7899999999998532 3789999995 4 79999999999999999999999
Q ss_pred EEcceecCCCCCCCCC-----CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc-------c
Q 013626 259 LLKKVFVPDEDRLPGV-----NS-------FQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGA-------P 319 (439)
Q Consensus 259 ~f~~v~Vp~~~~l~~~-----~~-------~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~-------p 319 (439)
.||||+||++++|+.. .+ +......+..+|+.+++.++|+++++++.+++|+++|+|||+ |
T Consensus 241 ~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~ 320 (661)
T 2ddh_A 241 KMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQ 320 (661)
T ss_dssp EESSEEEEGGGBCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCB
T ss_pred EeccEEECHHHhcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCCCCcccc
Confidence 9999999999999863 23 355666778899999999999999999999999999999998 8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCC-----ChhhhhhHHHHHHHHHHHHHHHHHHHhCccc
Q 013626 320 LAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK-------GAM-----TPGHASLGKSWITARARETVALGRELLGGNG 387 (439)
Q Consensus 320 i~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~-------~~~-----~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g 387 (439)
|++||.+|++|++|.+++++++++++++++.+++ +.. ....++++|.++++.+.++++.|+++|||+|
T Consensus 321 i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q~~GG~G 400 (661)
T 2ddh_A 321 ILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHG 400 (661)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999998863 322 1345788999999999999999999999999
Q ss_pred ccCcCcHHHHhhccCCcccccchHHHHHHHHHHHHhCC
Q 013626 388 ILSDFLVAKAFCDIEPIYTYEGTYDINTLVTGREVTGI 425 (439)
Q Consensus 388 ~~~~~~~~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~ 425 (439)
|+.+++++|+|||+++..+++|++++++.++++.+++.
T Consensus 401 ~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~ 438 (661)
T 2ddh_A 401 YSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKI 438 (661)
T ss_dssp HSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998864
No 38
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=8.2e-41 Score=339.19 Aligned_cols=313 Identities=14% Similarity=0.093 Sum_probs=242.1
Q ss_pred HHHHhcCCCHHHHHHHHhccccCCccccCCCCCCCHHHHHHHHHHHhccCCchhHHHHHHhhHHHHHHhhcC-CHHHHhh
Q 013626 80 EYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCG-SEEQKQK 158 (439)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~g-~~~qk~~ 158 (439)
.++...+.+.++.++.+..|+++.. .+|..|.++.-...++-.+ +. ....++ .++||++
T Consensus 69 ~~~~~~~~~~dL~~~~~~~~lw~~~--~~g~~gRs~~~~~~~~~~~-----------------a~-~~~~~~~~~eqk~~ 128 (481)
T 2yyk_A 69 MSFLIPKTKEDLKRRGQAYKLWADQ--NLGMMGRSPDYLNAVVMAY-----------------AA-SADYFGEFAENVRN 128 (481)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHHHHH--TTTCCCCCTHHHHHHHHHH-----------------HH-TGGGGGGGHHHHHH
T ss_pred chhcCCCCHHHHHHHHHHHHHHhhc--CCcccccChhhHHHHHHhc-----------------cC-ChHHHHHHHHHHHH
Confidence 3444456677888888888888754 2443333321111111111 11 111122 4699999
Q ss_pred hhhhhhcCcceeEEEecCCCCC--------CCcCCcceEEE-EeCCEEEEEeEEEeecCCCCCCEEEEEEEecC--C--C
Q 013626 159 YLPSLAQLNTIACWALTEPAYG--------SDASALNTTAT-KVEGGWILEGQKRWIGNSTFADVLVIFARNTT--T--N 225 (439)
Q Consensus 159 ~l~~l~~g~~~~~~a~tEp~~G--------sd~~~~~t~A~-~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~~--~--~ 225 (439)
|||++++|++++|+++|||+.| ||+. +.++++ +++|||+|||+|+|||| +.||+++|+++++. + +
T Consensus 129 ~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~~~~~~~~ 206 (481)
T 2yyk_A 129 YYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSILLQAGSEK 206 (481)
T ss_dssp HHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSCCCTTCGG
T ss_pred HHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecCCCCCCCC
Confidence 9999999999999999999976 6764 666665 78999999999999999 99999999999852 1 3
Q ss_pred CeEEEEEeCCCCCeeee--ccccc--------ccccc-ccceeEEEcceecCCCCCC--CCC-CChHHH--HHHHHHHHH
Q 013626 226 QINGYLVKKDAPGLTVT--KIENK--------IGLRI-VQNGDILLKKVFVPDEDRL--PGV-NSFQDT--SKVLAVSRV 289 (439)
Q Consensus 226 ~~~~flV~~~~pGv~v~--~~~~~--------~Glrg-~~~~~v~f~~v~Vp~~~~l--~~~-~~~~~~--~~~~~~~r~ 289 (439)
++++|+||++.|||++. +.+.+ +|+|. .++++|.||||+||++++| +.. .++... ...+..+|+
T Consensus 207 ~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~~l~~~r~ 286 (481)
T 2yyk_A 207 YALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAH 286 (481)
T ss_dssp GCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHTHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhhcchhHHH
Confidence 58899999999999994 34432 56774 7789999999999999998 443 122222 456788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--CChhhhhhH
Q 013626 290 MVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---GA--MTPGHASLG 364 (439)
Q Consensus 290 ~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~---~~--~~~~~~~~a 364 (439)
..++..+|.++.++..+..++.. || |+++|.+|++|++|.++++++|++++++++..+. +. +....++++
T Consensus 287 ~~~~~~~g~a~~~lg~a~~~~~~---~g--i~~~q~vq~~laem~~~leaar~l~~~aa~~~d~~~~G~~~~~~~~~s~a 361 (481)
T 2yyk_A 287 QVVALKTAKTEAFLGVAALMAEG---IG--ADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRGALDGA 361 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---TT--GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTSCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCcCccHHHHHHH
Confidence 99999999999999999888864 54 9999999999999999999999999999998863 32 334568999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhccCCcc------cccchHHHHHHHHHHHH
Q 013626 365 KSWITARARETVALGRELLGGNGILSDFLVAKAFCDIEPIY------TYEGTYDINTLVTGREV 422 (439)
Q Consensus 365 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~~~~~------~~~G~~~~~~~~i~r~~ 422 (439)
|+++++.+.++++.++|++||.|+. +|++|+| |.+... ...|++++++..+.|.+
T Consensus 362 K~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e~~~-~~~i~~~l~~~l~~~g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 362 RNLYPRLYPRIREILEQIGASGLIT--LPSEKDF-KGPLGPFLEKFLQGAALEAKERVALFRLA 422 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGSC--CCCHHHH-HSTTHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccc--CccHHHh-ChhhhHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999998887 8999999 886543 23588899998888754
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.9e-40 Score=334.68 Aligned_cols=257 Identities=18% Similarity=0.136 Sum_probs=208.3
Q ss_pred HHHhhcCC--HHHHhhhhhhhhcCcceeEEEecCCCCC--------CCc-CCcceEEEEeCCEEEEEeEEEeecCCCCCC
Q 013626 145 LTIALCGS--EEQKQKYLPSLAQLNTIACWALTEPAYG--------SDA-SALNTTATKVEGGWILEGQKRWIGNSTFAD 213 (439)
Q Consensus 145 ~~l~~~g~--~~qk~~~l~~l~~g~~~~~~a~tEp~~G--------sd~-~~~~t~A~~~~~g~~LnG~K~~is~a~~ad 213 (439)
..+..+|+ ++||++|||++++|++++|+++|||+.| ||+ ..++ ++++++|||+|||+|+|+||++.||
T Consensus 118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad 196 (490)
T 1u8v_A 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH 196 (490)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence 34568999 9999999999999999999999999874 675 3444 8999999999999999999999999
Q ss_pred EEEEEEEecC----CCCeEEEEEeCCCCCeeee---ccccc----------ccc-cc-ccceeEEEcceecCCCCCC--C
Q 013626 214 VLVIFARNTT----TNQINGYLVKKDAPGLTVT---KIENK----------IGL-RI-VQNGDILLKKVFVPDEDRL--P 272 (439)
Q Consensus 214 ~~~v~a~~~~----~~~~~~flV~~~~pGv~v~---~~~~~----------~Gl-rg-~~~~~v~f~~v~Vp~~~~l--~ 272 (439)
+++|+++++. .+++++|+||.+.|||++. +.+++ +|+ |. .++++|.||||+||++++| +
T Consensus 197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g 276 (490)
T 1u8v_A 197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ 276 (490)
T ss_dssp EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence 9999999742 1357899999999999994 45554 676 64 6778999999999999998 4
Q ss_pred CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013626 273 GV-NSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLY 351 (439)
Q Consensus 273 ~~-~~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~ 351 (439)
.. .++......+...|+.+++..+|.++.++..+..... .|| |+++|.+|++|++|.++++++|++++++++..
T Consensus 277 ~~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~---~~g--i~~~q~vq~~laem~~~leaar~l~~~aa~~~ 351 (490)
T 1u8v_A 277 EYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAAD---YNG--AQKASHVKDKLIEMTHLNETLYCCGIACSAEG 351 (490)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC--chhcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 43 3455555666778887777666666666665544332 244 89999999999999999999999999999987
Q ss_pred Hc---CC--CChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhcc-CCcccccc
Q 013626 352 EK---GA--MTPGHASLGKSWITARARETVALGRELLGGNGILSDFLVAKAFCDI-EPIYTYEG 409 (439)
Q Consensus 352 ~~---~~--~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~-~~~~~~~G 409 (439)
+. +. +....++++|+++++.+.++++.++|+|||.|++ +|++|+|||. ++..++|.
T Consensus 352 d~~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~er~~rd~~~~~~~~~~ 413 (490)
T 1u8v_A 352 YPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT--MPSEADFKSETVVGRDGET 413 (490)
T ss_dssp EECTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH--CCCHHHHTCCCBCSTTSCB
T ss_pred cccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc--ChHHHHHhCchhccccchh
Confidence 63 32 3345689999999999999999999999999998 7777777777 44444443
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=100.00 E-value=5.5e-34 Score=288.79 Aligned_cols=235 Identities=13% Similarity=0.130 Sum_probs=181.1
Q ss_pred cCC--HHHHhhhhhhhhcCcceeEEEecCCCC--------CCCcCCcceEEEEeCCEEEEEeEEEeecCCCCCCEEEEEE
Q 013626 150 CGS--EEQKQKYLPSLAQLNTIACWALTEPAY--------GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFA 219 (439)
Q Consensus 150 ~g~--~~qk~~~l~~l~~g~~~~~~a~tEp~~--------Gsd~~~~~t~A~~~~~g~~LnG~K~~is~a~~ad~~~v~a 219 (439)
+|+ .+|+++|||++++|++++|+++|||++ |||+ .++++ .+++|||+|||+|.||||+..||+++|++
T Consensus 127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a 204 (515)
T 3hwc_A 127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGC 204 (515)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECC
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEE
Confidence 554 588899999999999999999999986 4787 44433 45789999999999999999999999999
Q ss_pred Ee-cCC--CCeEEEEEeCCCCCeeeecccccccc-----cc-----ccceeEEEcceecCCCCCC--CCC-CChHHHHHH
Q 013626 220 RN-TTT--NQINGYLVKKDAPGLTVTKIENKIGL-----RI-----VQNGDILLKKVFVPDEDRL--PGV-NSFQDTSKV 283 (439)
Q Consensus 220 ~~-~~~--~~~~~flV~~~~pGv~v~~~~~~~Gl-----rg-----~~~~~v~f~~v~Vp~~~~l--~~~-~~~~~~~~~ 283 (439)
++ +.. ..+++|+||.+.|||++...|.++|. +. ..+++|.||||+||.+++| |.. .++......
T Consensus 205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~ 284 (515)
T 3hwc_A 205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI 284 (515)
T ss_dssp CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence 97 321 23889999999999999877777663 22 3378999999999999999 554 345443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CC--CCh
Q 013626 284 LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---GA--MTP 358 (439)
Q Consensus 284 ~~~~r~~~aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~---~~--~~~ 358 (439)
+...+.......+|.+..++..+..++. .|| |++||.||++|++|.+.++++|++++++++..+. +. +..
T Consensus 285 ~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~g--I~~fQ~Vq~kLAem~~~lEaaR~l~~~Aa~~~d~~~~G~~~p~~ 359 (515)
T 3hwc_A 285 FDWVHYHILIRQVLRAELIVGLAILITE---HIG--TSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNP 359 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCH
Confidence 2222211112334444444444433332 244 9999999999999999999999999999988764 32 345
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCcccccCc
Q 013626 359 GHASLGKSWITARARETVALGRELLGGNGILSD 391 (439)
Q Consensus 359 ~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~ 391 (439)
..++++|.++++.+.++++.++|+|||.+++..
T Consensus 360 ~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~P 392 (515)
T 3hwc_A 360 LIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIP 392 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCC
Confidence 568999999999999999999999999999853
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.95 E-value=2.8e-27 Score=240.06 Aligned_cols=241 Identities=14% Similarity=0.088 Sum_probs=186.9
Q ss_pred HHHhhhhhhhhcCcceeEEEecCCCCC-CC----cCCcceE-EEEeCCEEEEEeEEEeecCCCCCCEEEEEEEecCC---
Q 013626 154 EQKQKYLPSLAQLNTIACWALTEPAYG-SD----ASALNTT-ATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTT--- 224 (439)
Q Consensus 154 ~qk~~~l~~l~~g~~~~~~a~tEp~~G-sd----~~~~~t~-A~~~~~g~~LnG~K~~is~a~~ad~~~v~a~~~~~--- 224 (439)
+...+|+..+..+++..+.++|+|... |. ...+..+ .++++|||+|||.|.|+||++.||+++|++++...
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~ 213 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG 213 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence 455689999999999999999999752 11 1122233 44578999999999999999999999999987542
Q ss_pred CCeEEEEEeCCCCCeeeecccc---------ccccccc-cceeEEEcceecCCCCCC--CCCC-ChHHHHHHHHHHHHHH
Q 013626 225 NQINGYLVKKDAPGLTVTKIEN---------KIGLRIV-QNGDILLKKVFVPDEDRL--PGVN-SFQDTSKVLAVSRVMV 291 (439)
Q Consensus 225 ~~~~~flV~~~~pGv~v~~~~~---------~~Glrg~-~~~~v~f~~v~Vp~~~~l--~~~~-~~~~~~~~~~~~r~~~ 291 (439)
++..+|+||.++|||++..... +++.++. ..+.|.||||+||.+++| +... ++......+...+...
T Consensus 214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~ 293 (517)
T 4g5e_A 214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHA 293 (517)
T ss_dssp GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHH
Confidence 4578899999999999854333 3333333 237799999999999987 4432 3455566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C--CCChhhhhhHHH
Q 013626 292 AWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK---G--AMTPGHASLGKS 366 (439)
Q Consensus 292 aa~~lG~a~~al~~a~~y~~~R~~fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~---~--~~~~~~~~~aK~ 366 (439)
++..+|.++.++..+..+++. +| |.+||.||++|++|.+.++++++++++++..... | .+....++++|.
T Consensus 294 ~~~~~~~~~~~~g~a~~~ae~---~G--i~~fq~Vq~kLaEm~~~~E~~ral~~aaa~~a~~~~~G~~~P~~~~a~~aK~ 368 (517)
T 4g5e_A 294 LIRQSVRAELMAGLAILITEH---IG--TNKIPAVQTRVAKLIGFHQAMLAHIVASEELGFHTPGGAYKPNILIYDFGRA 368 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcCHHHHHHHHH
Confidence 888888899888888888753 44 8899999999999999999999999888764322 2 134557889999
Q ss_pred HHHHHHHHHHHHHHHHhCcccccCcCcHHHHhhcc
Q 013626 367 WITARARETVALGRELLGGNGILSDFLVAKAFCDI 401 (439)
Q Consensus 367 ~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~rD~ 401 (439)
++++...+++++++|++||.|++. |-++.|+|-
T Consensus 369 ~a~~~~~rv~~eaiqi~GG~g~~~--Pse~d~~~~ 401 (517)
T 4g5e_A 369 LYLENFSQMIYELVDLSGRSALIF--ASEDQWNDE 401 (517)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTCC--CCHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhCCccccC--CCHHHhcCh
Confidence 999999999999999999999983 444555544
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=93.74 E-value=0.44 Score=49.06 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=79.2
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-hhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCc
Q 013626 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEK-GAMT-PGHASLGKSWITARARETVALGRELLGGNGILSDFL 393 (439)
Q Consensus 316 fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~-~~~~-~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~ 393 (439)
+|+.|.+.|.+..+|+++.+++++|.+.+.++.+.+.. +.+. .....+++.||.+...++-..+.++. ..+.++-.
T Consensus 482 ~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 559 (597)
T 3owa_A 482 YGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEIEAHAKETL--IAVENGDM 559 (597)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccchH
Confidence 67889999999999999999999999999999988875 6544 44678999999999999999998888 45555555
Q ss_pred HHHHhhccCCcccccchH-HHHHHHHHHHHhC
Q 013626 394 VAKAFCDIEPIYTYEGTY-DINTLVTGREVTG 424 (439)
Q Consensus 394 ~~r~~rD~~~~~~~~G~~-~~~~~~i~r~~lg 424 (439)
+..++..++-+..+...+ .-.+..|++.++.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 591 (597)
T 3owa_A 560 LRMMLSSLRKLTRHTPLNVIPKKREIAAKILE 591 (597)
T ss_dssp HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 544444454444443322 3444566666644
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=86.93 E-value=6.1 Score=40.61 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=56.3
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCh-hhhhhHHHHHHHHHHHHHHHHHHHh
Q 013626 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTP-GHASLGKSWITARARETVALGRELL 383 (439)
Q Consensus 316 fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~aK~~~~~~a~~~~~~a~~~~ 383 (439)
.|..+.+.|.+..+|+++...++++.+.+.++.+.++.|.... .+..+++.|+.+...++-..+.++.
T Consensus 506 ~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 574 (607)
T 2uxw_A 506 HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQ 574 (607)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888999999999999999999999999888777776553 3477899999888888888777743
No 44
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=65.75 E-value=89 Score=31.54 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=71.0
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhhhhHHHHHHHHHHHHHHHHHHHhCcccccCcCcH-
Q 013626 316 FGAPLAAFQINQQKLVQMLGNIQAMILVGWRLCKLYEKGAMTPGHASLGKSWITARARETVALGRELLGGNGILSDFLV- 394 (439)
Q Consensus 316 fg~pi~~~~~vq~~la~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~- 394 (439)
+|..+...|.+-.+++++.+.++.+.+.+.++.+. .+. ...+++.|+.+...++...+.+++- ++..+.|.
T Consensus 468 ~~~~l~~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 539 (577)
T 2z1q_A 468 YGQGVEEEQEVLGAVADILIDAYAAESALLRARRL--GGL----APVLARIYLAQALDRAQAGALSVLP--RLVEGDEAR 539 (577)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTT----HHHHHHHHHHHHHHHHHHHHHHHGG--GTCCTTTTH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCchh
Confidence 35666677889999999999999999988888765 222 6778999999988888888777763 34444332
Q ss_pred --HHHhhccCCcccccchHHHHHHHHHHHHhCCCC
Q 013626 395 --AKAFCDIEPIYTYEGTYDINTLVTGREVTGIAS 427 (439)
Q Consensus 395 --~r~~rD~~~~~~~~G~~~~~~~~i~r~~lg~~~ 427 (439)
...+|.. ...+..+++-+...|++.++....
T Consensus 540 ~~~~~~~~~--~~~~~~~~~~~~~~ia~~~~~~~~ 572 (577)
T 2z1q_A 540 VVYSAARRL--TKREPGDLVALRRQAAEAVLEAGG 572 (577)
T ss_dssp HHHHHHHHH--TCCCCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHh--cccCCCChHHHHHHHHHHHHhcCC
Confidence 2223332 233444667778888888865443
Done!