BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013627
         (439 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1
           SV=1
          Length = 1004

 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 114/160 (71%), Gaps = 1/160 (0%)

Query: 281 TQKTPSFAQLYHSLTKQVEKKD-LPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADI 339
             + P   + Y SL K+  KK+  PS ++      S A ++++GEI+NRS  LLA+KAD+
Sbjct: 718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query: 340 ETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMR 399
           ET+G F+ SL  +V A+++T+IEDLL FV WLD+ELS L DERAVLKHF WPE KADA+R
Sbjct: 778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837

Query: 400 EAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK 439
           EAA EY+DL +LE +++S+ DD N+    ALKKM  LL+K
Sbjct: 838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEK 877


>sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980 OS=Arabidopsis thaliana
           GN=At4g04980 PE=2 SV=1
          Length = 724

 Score = 44.3 bits (103), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 15/152 (9%)

Query: 282 QKTPSFAQLYHSLTKQVEKKDLP----------SPVNQKRPAVSIAHSSI---VGEIQNR 328
           +++   A LY +L  ++E + +           + V +K P V +A S +   + E+  R
Sbjct: 435 RRSAQIANLYWALKGKLEGRGVEGKTKKASKGQNSVAEKSP-VKVARSGMADALAEMTKR 493

Query: 329 SAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF 388
           S++   I+ D++     I  L   + +    ++++LLEF   ++  L  L DE  VL  F
Sbjct: 494 SSYFQQIEEDVQKYAKSIEELKSSIHSFQTKDMKELLEFHSKVESILEKLTDETQVLARF 553

Query: 389 K-WPEKKADAMREAAVEYRDLKQLENEISSYR 419
           + +PEKK + +R A   Y+ L  +  E+ +++
Sbjct: 554 EGFPEKKLEVIRTAGALYKKLDGILVELKNWK 585


>sp|P16862|K6PF2_YEAST 6-phosphofructokinase subunit beta OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=PFK2 PE=1 SV=4
          Length = 959

 Score = 35.8 bits (81), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 245 PIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLP 304
           P+ N  GV     A  + P P   PP P   A +  + K  S+  L + +        LP
Sbjct: 133 PLGNVVGVTSTKNAVSTKPTP---PPAPEASAESGLSSKVHSYTDLAYRMKTTDTYPSLP 189

Query: 305 SPVNQKRPAVSIAHSS 320
            P+N+ + A+++  S 
Sbjct: 190 KPLNRPQKAIAVMTSG 205


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.126    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,061,426
Number of Sequences: 539616
Number of extensions: 6719663
Number of successful extensions: 67466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 1051
Number of HSP's that attempted gapping in prelim test: 51372
Number of HSP's gapped (non-prelim): 10218
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)