Query 013627
Match_columns 439
No_of_seqs 167 out of 195
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:46:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 98.9 3.7E-09 8.1E-14 115.7 8.2 31 269-299 582-619 (1102)
2 KOG1924 RhoA GTPase effector D 98.1 1.2E-05 2.5E-10 89.1 10.9 18 139-156 468-485 (1102)
3 PF05308 Mito_fiss_reg: Mitoch 97.7 0.00049 1.1E-08 68.1 11.7 22 174-195 123-144 (253)
4 PF06005 DUF904: Protein of un 95.9 0.1 2.2E-06 42.9 9.6 62 132-193 5-66 (72)
5 KOG1923 Rac1 GTPase effector F 95.8 0.037 8E-07 62.1 9.1 40 375-414 504-543 (830)
6 PRK13729 conjugal transfer pil 95.6 0.19 4.2E-06 54.1 13.0 71 120-193 54-124 (475)
7 COG3883 Uncharacterized protei 94.7 0.2 4.3E-06 50.5 9.6 62 130-191 37-98 (265)
8 PF06156 DUF972: Protein of un 94.4 0.27 5.8E-06 43.2 8.6 55 133-187 3-57 (107)
9 PRK15422 septal ring assembly 93.6 0.81 1.8E-05 38.7 9.5 58 132-189 5-69 (79)
10 PRK13169 DNA replication intia 93.6 0.45 9.9E-06 42.2 8.5 54 133-186 3-56 (110)
11 COG4026 Uncharacterized protei 93.4 0.39 8.5E-06 47.8 8.6 62 133-194 137-198 (290)
12 COG3883 Uncharacterized protei 93.0 0.65 1.4E-05 46.8 9.5 80 130-214 30-109 (265)
13 PRK10884 SH3 domain-containing 92.1 0.82 1.8E-05 44.3 8.7 38 157-194 123-160 (206)
14 PRK11637 AmiB activator; Provi 92.1 1.8 3.8E-05 45.3 11.8 60 131-190 47-106 (428)
15 KOG1923 Rac1 GTPase effector F 92.0 0.42 9E-06 54.1 7.3 9 380-388 489-497 (830)
16 PF07106 TBPIP: Tat binding pr 91.8 1.1 2.4E-05 41.2 8.8 57 133-194 81-137 (169)
17 PF11932 DUF3450: Protein of u 91.7 1.3 2.9E-05 43.1 9.7 63 132-194 36-98 (251)
18 PF08826 DMPK_coil: DMPK coile 91.7 2.3 5.1E-05 34.2 9.4 58 136-193 2-59 (61)
19 PF07888 CALCOCO1: Calcium bin 91.7 2.6 5.6E-05 46.5 12.8 170 10-189 9-194 (546)
20 KOG4603 TBP-1 interacting prot 90.9 1.5 3.2E-05 42.2 8.8 91 126-216 81-175 (201)
21 COG5185 HEC1 Protein involved 90.9 15 0.00033 40.3 17.2 62 372-435 500-562 (622)
22 PF07106 TBPIP: Tat binding pr 90.9 1.1 2.3E-05 41.2 7.8 60 138-197 72-133 (169)
23 PF12718 Tropomyosin_1: Tropom 90.9 3.1 6.6E-05 38.1 10.6 58 133-190 9-66 (143)
24 PRK13729 conjugal transfer pil 90.8 0.62 1.3E-05 50.4 7.0 66 124-189 62-127 (475)
25 PRK11637 AmiB activator; Provi 90.8 1.5 3.3E-05 45.8 9.7 60 134-193 57-116 (428)
26 PF05667 DUF812: Protein of un 90.6 25 0.00054 39.3 19.2 59 131-189 321-379 (594)
27 PRK10884 SH3 domain-containing 90.4 2.1 4.5E-05 41.6 9.5 47 148-194 121-167 (206)
28 KOG2391 Vacuolar sorting prote 90.2 13 0.00027 39.3 15.4 16 204-219 120-135 (365)
29 PF08172 CASP_C: CASP C termin 90.0 3.1 6.8E-05 41.4 10.7 76 131-215 6-133 (248)
30 TIGR02894 DNA_bind_RsfA transc 89.8 2.2 4.7E-05 40.4 8.8 56 138-193 90-145 (161)
31 PF08614 ATG16: Autophagy prot 89.1 3.8 8.2E-05 38.7 10.1 55 135-189 106-160 (194)
32 PF06005 DUF904: Protein of un 89.0 4.3 9.3E-05 33.5 9.0 51 138-188 4-54 (72)
33 COG3074 Uncharacterized protei 88.9 8.4 0.00018 32.3 10.6 41 132-172 5-45 (79)
34 KOG2675 Adenylate cyclase-asso 88.8 0.42 9.2E-06 51.2 3.8 15 283-297 260-274 (480)
35 PRK04406 hypothetical protein; 88.5 3.6 7.8E-05 34.1 8.3 54 131-184 4-57 (75)
36 PF08317 Spc7: Spc7 kinetochor 87.9 4 8.7E-05 41.5 10.0 63 127-189 205-267 (325)
37 PF05667 DUF812: Protein of un 87.8 45 0.00097 37.4 18.7 65 129-193 326-390 (594)
38 PRK09039 hypothetical protein; 87.8 4.3 9.2E-05 42.0 10.3 56 135-190 120-175 (343)
39 PF02183 HALZ: Homeobox associ 87.6 2 4.3E-05 32.5 5.8 41 149-189 2-42 (45)
40 smart00787 Spc7 Spc7 kinetocho 87.3 4.5 9.8E-05 41.5 10.0 64 127-190 200-263 (312)
41 PF14197 Cep57_CLD_2: Centroso 87.3 7.1 0.00015 31.9 9.3 61 131-191 5-65 (69)
42 COG4026 Uncharacterized protei 87.2 3.7 8.1E-05 41.1 9.0 42 148-189 138-179 (290)
43 PF00170 bZIP_1: bZIP transcri 86.6 3.2 6.9E-05 32.5 6.7 37 152-188 26-62 (64)
44 PF09304 Cortex-I_coil: Cortex 86.3 8 0.00017 34.5 9.7 66 131-196 9-74 (107)
45 PF10224 DUF2205: Predicted co 86.1 8.2 0.00018 32.6 9.2 46 143-188 21-66 (80)
46 PF04102 SlyX: SlyX; InterPro 86.0 4.3 9.3E-05 32.8 7.3 50 137-186 3-52 (69)
47 KOG2264 Exostosin EXT1L [Signa 85.9 3.5 7.6E-05 46.0 8.7 67 131-197 86-152 (907)
48 PF07888 CALCOCO1: Calcium bin 85.8 6.6 0.00014 43.4 10.8 63 131-193 150-212 (546)
49 PF13851 GAS: Growth-arrest sp 85.7 7.9 0.00017 37.2 10.2 82 131-218 27-108 (201)
50 smart00338 BRLZ basic region l 85.2 3.6 7.9E-05 32.2 6.4 34 153-186 27-60 (65)
51 PF10146 zf-C4H2: Zinc finger- 84.9 20 0.00044 35.5 12.8 22 147-168 34-55 (230)
52 PF00170 bZIP_1: bZIP transcri 84.7 8.9 0.00019 30.0 8.4 34 148-181 29-62 (64)
53 PF14282 FlxA: FlxA-like prote 84.6 4.6 0.0001 35.1 7.4 22 172-193 50-71 (106)
54 PF00038 Filament: Intermediat 84.5 14 0.00031 36.5 11.7 38 142-179 213-250 (312)
55 PRK02119 hypothetical protein; 84.1 7.8 0.00017 31.9 8.1 51 134-184 5-55 (73)
56 PF08614 ATG16: Autophagy prot 83.4 12 0.00025 35.4 10.1 62 132-193 110-171 (194)
57 PF11932 DUF3450: Protein of u 83.3 9.5 0.00021 37.2 9.8 53 142-194 39-91 (251)
58 smart00338 BRLZ basic region l 83.2 18 0.00038 28.3 9.5 36 147-182 28-63 (65)
59 PF15290 Syntaphilin: Golgi-lo 83.1 12 0.00025 38.6 10.4 26 134-159 78-103 (305)
60 PF01213 CAP_N: Adenylate cycl 82.7 0.39 8.4E-06 49.2 0.0 13 284-296 259-271 (312)
61 PF05308 Mito_fiss_reg: Mitoch 82.6 11 0.00023 37.9 9.9 23 164-186 120-142 (253)
62 KOG3671 Actin regulatory prote 82.5 2.2 4.9E-05 46.6 5.5 9 317-325 494-502 (569)
63 PF11544 Spc42p: Spindle pole 82.4 13 0.00028 31.4 8.8 49 133-181 7-55 (76)
64 TIGR03185 DNA_S_dndD DNA sulfu 82.2 10 0.00022 42.0 10.6 44 149-192 425-468 (650)
65 PF08826 DMPK_coil: DMPK coile 82.0 11 0.00024 30.4 8.0 46 133-185 13-58 (61)
66 PF10473 CENP-F_leu_zip: Leuci 82.0 14 0.0003 34.2 9.7 30 135-164 7-36 (140)
67 COG4942 Membrane-bound metallo 81.9 82 0.0018 34.1 19.7 31 317-347 158-188 (420)
68 PRK00295 hypothetical protein; 81.6 12 0.00027 30.3 8.2 32 154-185 21-52 (68)
69 KOG0709 CREB/ATF family transc 81.5 2.5 5.4E-05 45.7 5.4 64 130-193 255-320 (472)
70 PRK00888 ftsB cell division pr 81.5 4.7 0.0001 35.2 6.2 39 147-185 29-67 (105)
71 PF02183 HALZ: Homeobox associ 81.4 6.7 0.00015 29.7 6.2 41 143-183 3-43 (45)
72 KOG2675 Adenylate cyclase-asso 81.4 1.1 2.4E-05 48.1 2.7 17 277-293 258-274 (480)
73 PF10805 DUF2730: Protein of u 81.1 13 0.00027 32.4 8.7 59 131-189 35-95 (106)
74 COG2433 Uncharacterized conser 81.0 13 0.00028 41.8 10.6 48 126-173 417-464 (652)
75 PRK04325 hypothetical protein; 81.0 12 0.00027 30.8 8.1 50 136-185 7-56 (74)
76 PF10211 Ax_dynein_light: Axon 81.0 13 0.00029 35.4 9.6 10 88-97 67-76 (189)
77 PF08006 DUF1700: Protein of u 80.8 2.3 4.9E-05 39.4 4.3 60 341-400 2-62 (181)
78 PRK02793 phi X174 lysis protei 80.7 12 0.00026 30.7 7.9 49 136-184 6-54 (72)
79 PF06156 DUF972: Protein of un 80.6 8.6 0.00019 33.9 7.6 48 146-193 9-56 (107)
80 KOG1962 B-cell receptor-associ 80.5 6.7 0.00014 38.7 7.5 59 136-194 149-207 (216)
81 PF10473 CENP-F_leu_zip: Leuci 79.6 34 0.00073 31.7 11.3 46 149-194 56-101 (140)
82 PF04111 APG6: Autophagy prote 79.6 14 0.0003 37.9 9.8 47 133-179 45-91 (314)
83 PF07889 DUF1664: Protein of u 79.3 30 0.00065 31.5 10.8 66 131-196 47-112 (126)
84 PF04156 IncA: IncA protein; 78.9 17 0.00038 33.5 9.5 61 131-191 88-148 (191)
85 KOG4571 Activating transcripti 78.8 5 0.00011 41.2 6.3 35 148-182 251-285 (294)
86 PF00769 ERM: Ezrin/radixin/mo 78.6 6.3 0.00014 38.9 6.8 61 133-193 35-95 (246)
87 PF02403 Seryl_tRNA_N: Seryl-t 78.5 14 0.00031 31.3 8.1 55 135-189 40-97 (108)
88 PF04859 DUF641: Plant protein 78.3 7.5 0.00016 35.6 6.7 51 131-181 80-130 (131)
89 PF12777 MT: Microtubule-bindi 78.0 21 0.00046 36.6 10.6 62 133-194 230-291 (344)
90 PRK00736 hypothetical protein; 77.9 16 0.00035 29.6 7.8 45 133-184 7-51 (68)
91 PF06810 Phage_GP20: Phage min 77.9 12 0.00026 34.7 8.1 46 138-183 20-68 (155)
92 PF11559 ADIP: Afadin- and alp 77.7 23 0.0005 31.9 9.7 45 149-193 63-107 (151)
93 KOG4797 Transcriptional regula 77.7 11 0.00023 34.0 7.2 50 131-180 45-95 (123)
94 PF04111 APG6: Autophagy prote 77.5 17 0.00038 37.2 9.8 47 147-193 45-91 (314)
95 COG4467 Regulator of replicati 77.3 14 0.0003 33.3 7.8 52 133-184 3-54 (114)
96 PF09304 Cortex-I_coil: Cortex 77.1 22 0.00048 31.8 9.0 46 148-193 12-57 (107)
97 PRK10803 tol-pal system protei 77.1 17 0.00037 36.2 9.4 47 389-435 209-262 (263)
98 PF12329 TMF_DNA_bd: TATA elem 77.0 22 0.00048 29.3 8.5 57 137-193 4-67 (74)
99 PF04156 IncA: IncA protein; 76.5 22 0.00049 32.8 9.5 42 149-190 120-161 (191)
100 PRK09039 hypothetical protein; 76.4 16 0.00036 37.7 9.4 7 210-216 179-185 (343)
101 PF07889 DUF1664: Protein of u 76.3 24 0.00053 32.1 9.3 63 131-193 61-123 (126)
102 PF12329 TMF_DNA_bd: TATA elem 76.3 33 0.00071 28.2 9.3 51 144-194 4-54 (74)
103 PRK10803 tol-pal system protei 76.2 87 0.0019 31.2 20.4 44 150-193 45-88 (263)
104 PRK00846 hypothetical protein; 76.1 21 0.00045 30.1 8.2 50 137-186 12-61 (77)
105 PRK15422 septal ring assembly 75.9 44 0.00095 28.5 10.0 54 140-193 6-59 (79)
106 COG1579 Zn-ribbon protein, pos 75.8 24 0.00053 35.3 10.0 14 285-298 174-187 (239)
107 PRK13169 DNA replication intia 75.6 21 0.00047 31.7 8.6 46 147-192 10-55 (110)
108 PF04102 SlyX: SlyX; InterPro 75.6 17 0.00036 29.4 7.3 50 144-193 3-52 (69)
109 PF03962 Mnd1: Mnd1 family; I 75.5 22 0.00047 34.0 9.2 62 131-193 69-130 (188)
110 KOG4005 Transcription factor X 75.3 17 0.00037 36.8 8.7 56 138-193 90-145 (292)
111 KOG1925 Rac1 GTPase effector F 75.1 2.6 5.6E-05 46.4 3.2 8 287-294 306-313 (817)
112 PF05266 DUF724: Protein of un 74.6 27 0.00058 33.6 9.6 41 133-173 112-152 (190)
113 PRK03918 chromosome segregatio 74.5 27 0.00058 39.4 11.1 7 181-187 681-687 (880)
114 PF14662 CCDC155: Coiled-coil 74.5 46 0.001 32.5 11.2 49 144-192 66-114 (193)
115 KOG4005 Transcription factor X 74.4 19 0.00041 36.5 8.7 59 131-189 90-148 (292)
116 PF11559 ADIP: Afadin- and alp 74.3 57 0.0012 29.3 11.3 50 144-193 51-100 (151)
117 PF08537 NBP1: Fungal Nap bind 73.6 18 0.0004 37.7 8.8 68 126-193 170-239 (323)
118 PF14916 CCDC92: Coiled-coil d 73.0 5.7 0.00012 32.0 4.0 37 136-172 1-41 (60)
119 PF04977 DivIC: Septum formati 72.5 10 0.00023 29.8 5.4 30 149-178 21-50 (80)
120 PF05911 DUF869: Plant protein 72.4 19 0.0004 41.5 9.3 62 126-187 584-645 (769)
121 PF12325 TMF_TATA_bd: TATA ele 72.0 76 0.0016 28.6 11.4 20 132-151 17-36 (120)
122 PHA02562 46 endonuclease subun 71.9 19 0.00041 38.3 8.8 14 134-147 309-322 (562)
123 KOG0964 Structural maintenance 71.8 21 0.00045 42.3 9.4 64 131-194 678-741 (1200)
124 COG1579 Zn-ribbon protein, pos 71.8 31 0.00067 34.6 9.6 41 133-173 91-131 (239)
125 PF00261 Tropomyosin: Tropomyo 71.7 69 0.0015 31.2 11.9 23 136-158 132-154 (237)
126 PF10211 Ax_dynein_light: Axon 71.7 36 0.00077 32.5 9.7 57 134-190 123-180 (189)
127 PF11068 YlqD: YlqD protein; 71.6 29 0.00063 31.7 8.7 71 123-193 12-87 (131)
128 PRK04406 hypothetical protein; 71.5 34 0.00074 28.4 8.3 46 144-189 10-55 (75)
129 KOG4674 Uncharacterized conser 71.5 2.7E+02 0.0058 35.6 18.9 99 318-416 914-1021(1822)
130 COG2433 Uncharacterized conser 71.4 23 0.0005 39.9 9.4 49 141-189 418-466 (652)
131 PF04899 MbeD_MobD: MbeD/MobD 71.3 26 0.00057 28.9 7.6 42 148-189 24-65 (70)
132 PF06120 Phage_HK97_TLTM: Tail 71.1 54 0.0012 33.9 11.4 35 131-165 74-108 (301)
133 PF01166 TSC22: TSC-22/dip/bun 71.1 7.2 0.00016 31.4 4.1 30 152-181 14-43 (59)
134 PF10226 DUF2216: Uncharacteri 71.0 33 0.00071 33.6 9.3 39 144-182 40-78 (195)
135 TIGR00634 recN DNA repair prot 71.0 24 0.00051 38.5 9.4 63 127-189 297-362 (563)
136 PF07798 DUF1640: Protein of u 71.0 43 0.00094 31.3 10.0 51 132-182 45-96 (177)
137 PF12325 TMF_TATA_bd: TATA ele 70.7 48 0.001 29.9 9.7 56 131-186 30-88 (120)
138 PF09738 DUF2051: Double stran 70.5 26 0.00056 36.1 9.0 47 148-194 108-154 (302)
139 KOG4571 Activating transcripti 70.4 54 0.0012 34.0 11.1 81 97-190 205-286 (294)
140 KOG0250 DNA repair protein RAD 70.0 35 0.00076 40.6 10.8 62 133-194 353-422 (1074)
141 KOG2391 Vacuolar sorting prote 70.0 33 0.00072 36.3 9.7 94 124-218 211-311 (365)
142 KOG1962 B-cell receptor-associ 69.9 24 0.00051 35.0 8.2 39 150-188 170-208 (216)
143 COG4942 Membrane-bound metallo 69.5 31 0.00067 37.2 9.6 50 138-187 38-87 (420)
144 PF11365 DUF3166: Protein of u 69.4 49 0.0011 29.0 9.2 42 149-190 5-46 (96)
145 PF10186 Atg14: UV radiation r 69.4 57 0.0012 31.5 10.8 23 389-411 276-298 (302)
146 PF08581 Tup_N: Tup N-terminal 69.4 64 0.0014 27.2 9.6 53 130-182 7-62 (79)
147 PF06637 PV-1: PV-1 protein (P 69.3 51 0.0011 35.5 10.9 28 146-173 286-313 (442)
148 PRK10869 recombination and rep 69.3 25 0.00054 38.6 9.2 63 127-189 292-357 (553)
149 PF04899 MbeD_MobD: MbeD/MobD 69.2 50 0.0011 27.3 8.7 52 144-195 13-64 (70)
150 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.2 47 0.001 29.6 9.4 31 159-189 59-89 (132)
151 cd00632 Prefoldin_beta Prefold 69.1 17 0.00038 31.0 6.4 42 130-171 62-103 (105)
152 smart00787 Spc7 Spc7 kinetocho 69.0 43 0.00093 34.5 10.3 27 146-172 173-199 (312)
153 TIGR02894 DNA_bind_RsfA transc 69.0 23 0.00051 33.6 7.7 33 157-189 102-134 (161)
154 PF00261 Tropomyosin: Tropomyo 68.8 63 0.0014 31.5 10.9 21 131-151 141-161 (237)
155 PF05008 V-SNARE: Vesicle tran 68.5 26 0.00057 28.0 7.0 28 131-158 25-52 (79)
156 PF09730 BicD: Microtubule-ass 68.2 36 0.00079 39.0 10.3 64 133-196 29-92 (717)
157 PF09755 DUF2046: Uncharacteri 68.0 68 0.0015 33.5 11.4 12 208-219 183-194 (310)
158 PF13851 GAS: Growth-arrest sp 67.8 47 0.001 32.0 9.7 32 151-182 99-130 (201)
159 PRK02119 hypothetical protein; 67.7 44 0.00095 27.5 8.2 45 144-188 8-52 (73)
160 PF10805 DUF2730: Protein of u 67.5 31 0.00068 30.0 7.7 57 137-193 34-92 (106)
161 KOG0964 Structural maintenance 67.1 35 0.00075 40.6 9.9 84 134-219 400-486 (1200)
162 PRK00295 hypothetical protein; 66.7 45 0.00097 27.1 8.0 48 146-193 6-53 (68)
163 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.7 62 0.0014 28.8 9.7 64 131-194 3-80 (132)
164 PF05565 Sipho_Gp157: Siphovir 66.5 43 0.00093 31.0 8.9 53 131-183 33-85 (162)
165 PRK11020 hypothetical protein; 66.2 18 0.00038 32.8 6.0 57 146-204 6-62 (118)
166 COG5178 PRP8 U5 snRNP spliceos 66.1 5.1 0.00011 48.0 3.2 11 358-368 96-106 (2365)
167 PF06103 DUF948: Bacterial pro 66.0 75 0.0016 26.2 9.6 62 132-193 20-81 (90)
168 COG3074 Uncharacterized protei 66.0 62 0.0014 27.3 8.7 47 147-193 13-59 (79)
169 PF14282 FlxA: FlxA-like prote 66.0 47 0.001 28.9 8.5 60 130-192 18-77 (106)
170 PRK04325 hypothetical protein; 65.9 47 0.001 27.4 8.0 46 144-189 8-53 (74)
171 PF03938 OmpH: Outer membrane 65.8 97 0.0021 27.6 10.8 31 132-162 37-67 (158)
172 PF05377 FlaC_arch: Flagella a 65.6 22 0.00049 28.3 5.8 35 141-175 3-37 (55)
173 PRK02793 phi X174 lysis protei 65.5 50 0.0011 27.1 8.1 50 143-192 6-55 (72)
174 TIGR02449 conserved hypothetic 65.4 57 0.0012 26.7 8.3 33 157-189 19-51 (65)
175 KOG0243 Kinesin-like protein [ 65.4 46 0.00099 39.7 10.6 27 132-158 442-468 (1041)
176 PF05377 FlaC_arch: Flagella a 65.4 28 0.00061 27.7 6.3 36 147-182 2-37 (55)
177 PF01213 CAP_N: Adenylate cycl 65.1 2.1 4.5E-05 44.0 0.0 8 335-342 282-289 (312)
178 PF05700 BCAS2: Breast carcino 65.0 58 0.0012 31.6 9.8 38 153-190 176-213 (221)
179 PRK08475 F0F1 ATP synthase sub 65.0 1.1E+02 0.0023 28.5 11.2 93 130-222 52-149 (167)
180 PF06008 Laminin_I: Laminin Do 65.0 1.5E+02 0.0032 29.2 18.0 36 318-355 132-167 (264)
181 PHA01750 hypothetical protein 64.7 38 0.00082 28.2 7.1 34 150-183 40-73 (75)
182 PF04977 DivIC: Septum formati 64.4 20 0.00044 28.1 5.6 32 154-185 19-50 (80)
183 PF09726 Macoilin: Transmembra 64.4 37 0.00079 38.7 9.5 31 164-194 543-573 (697)
184 PRK09841 cryptic autophosphory 64.2 74 0.0016 36.0 11.8 39 134-172 256-294 (726)
185 PF10481 CENP-F_N: Cenp-F N-te 64.0 34 0.00074 35.3 8.2 45 153-197 61-105 (307)
186 PF05701 WEMBL: Weak chloropla 64.0 52 0.0011 35.9 10.3 79 138-218 295-380 (522)
187 PRK00736 hypothetical protein; 63.9 46 0.001 27.0 7.5 49 145-193 5-53 (68)
188 TIGR02338 gimC_beta prefoldin, 63.8 28 0.00061 30.1 6.7 41 130-170 66-106 (110)
189 KOG3433 Protein involved in me 63.6 51 0.0011 32.3 8.9 65 130-194 80-144 (203)
190 PRK09343 prefoldin subunit bet 63.6 28 0.0006 30.9 6.8 38 130-167 70-107 (121)
191 PF10146 zf-C4H2: Zinc finger- 63.0 82 0.0018 31.3 10.5 28 133-160 3-30 (230)
192 KOG0971 Microtubule-associated 62.9 35 0.00076 40.3 8.9 27 130-156 416-442 (1243)
193 PHA03211 serine/threonine kina 62.9 5.6 0.00012 42.2 2.7 12 394-405 342-353 (461)
194 KOG0946 ER-Golgi vesicle-tethe 62.6 60 0.0013 38.0 10.6 27 374-403 905-935 (970)
195 PRK00888 ftsB cell division pr 62.3 20 0.00043 31.3 5.5 34 153-186 28-61 (105)
196 KOG4343 bZIP transcription fac 62.0 59 0.0013 36.4 10.1 85 128-219 275-362 (655)
197 PHA03011 hypothetical protein; 62.0 66 0.0014 28.9 8.6 62 132-193 58-119 (120)
198 KOG0250 DNA repair protein RAD 62.0 3.6E+02 0.0078 32.7 19.6 57 319-378 357-413 (1074)
199 PF07200 Mod_r: Modifier of ru 61.8 50 0.0011 29.6 8.2 42 148-189 30-71 (150)
200 KOG2129 Uncharacterized conser 61.4 54 0.0012 35.8 9.4 53 152-219 165-217 (552)
201 TIGR02168 SMC_prok_B chromosom 61.2 65 0.0014 36.8 10.7 24 327-350 993-1016(1179)
202 PF04849 HAP1_N: HAP1 N-termin 61.2 91 0.002 32.5 10.8 53 133-185 215-267 (306)
203 TIGR03185 DNA_S_dndD DNA sulfu 61.1 40 0.00086 37.4 8.9 60 134-193 394-462 (650)
204 PF10883 DUF2681: Protein of u 61.1 26 0.00057 30.1 5.9 36 161-196 25-60 (87)
205 PF14197 Cep57_CLD_2: Centroso 61.0 57 0.0012 26.7 7.6 52 143-194 3-54 (69)
206 PF06657 Cep57_MT_bd: Centroso 61.0 62 0.0014 27.0 8.0 26 168-193 52-77 (79)
207 PF09726 Macoilin: Transmembra 60.8 47 0.001 37.9 9.4 61 134-194 428-495 (697)
208 PF04728 LPP: Lipoprotein leuc 60.5 82 0.0018 25.2 8.1 19 142-160 7-25 (56)
209 TIGR01005 eps_transp_fam exopo 60.4 52 0.0011 36.9 9.7 20 131-150 288-307 (754)
210 PF10152 DUF2360: Predicted co 60.3 1.4E+02 0.0031 27.5 11.6 33 162-194 17-49 (148)
211 PRK05431 seryl-tRNA synthetase 60.2 46 0.001 35.4 8.9 20 171-190 71-90 (425)
212 PF15195 TMEM210: TMEM210 fami 60.0 6.2 0.00013 34.9 2.0 11 260-270 104-114 (116)
213 KOG0946 ER-Golgi vesicle-tethe 59.8 51 0.0011 38.5 9.4 57 137-193 649-705 (970)
214 PF03915 AIP3: Actin interacti 59.5 84 0.0018 34.0 10.6 64 130-193 205-273 (424)
215 PRK11519 tyrosine kinase; Prov 59.4 86 0.0019 35.4 11.2 36 135-170 257-292 (719)
216 PRK14161 heat shock protein Gr 59.2 70 0.0015 30.6 9.0 16 210-225 105-120 (178)
217 PF04728 LPP: Lipoprotein leuc 59.2 85 0.0018 25.1 8.0 42 146-187 4-45 (56)
218 PTZ00446 vacuolar sorting prot 59.0 93 0.002 30.2 9.9 86 108-194 5-102 (191)
219 PF04880 NUDE_C: NUDE protein, 58.7 15 0.00033 34.9 4.5 44 135-182 4-47 (166)
220 PF15619 Lebercilin: Ciliary p 58.6 74 0.0016 30.7 9.2 6 153-158 126-131 (194)
221 PRK00846 hypothetical protein; 58.6 56 0.0012 27.5 7.3 51 143-193 11-61 (77)
222 PRK11546 zraP zinc resistance 58.5 50 0.0011 30.8 7.7 67 127-193 43-109 (143)
223 PRK12704 phosphodiesterase; Pr 58.3 1.1E+02 0.0024 33.7 11.5 34 319-352 320-353 (520)
224 COG1196 Smc Chromosome segrega 58.1 94 0.002 37.1 11.7 34 389-422 1055-1088(1163)
225 PF10779 XhlA: Haemolysin XhlA 57.9 66 0.0014 25.9 7.5 41 153-193 7-47 (71)
226 PF04012 PspA_IM30: PspA/IM30 57.8 89 0.0019 29.6 9.6 16 135-150 55-70 (221)
227 KOG3119 Basic region leucine z 57.8 63 0.0014 32.5 8.9 72 117-194 179-250 (269)
228 PF12777 MT: Microtubule-bindi 57.8 31 0.00068 35.4 6.9 67 124-190 212-280 (344)
229 TIGR02449 conserved hypothetic 57.5 1.1E+02 0.0023 25.2 9.2 36 156-191 4-39 (65)
230 PRK13182 racA polar chromosome 57.2 78 0.0017 30.2 8.9 62 131-194 85-146 (175)
231 PF05278 PEARLI-4: Arabidopsis 57.0 79 0.0017 32.4 9.4 48 146-193 194-241 (269)
232 PRK11448 hsdR type I restricti 56.8 80 0.0017 37.9 10.9 62 131-192 149-210 (1123)
233 PF09730 BicD: Microtubule-ass 56.8 51 0.0011 37.8 8.9 60 128-187 262-321 (717)
234 PF13094 CENP-Q: CENP-Q, a CEN 56.8 87 0.0019 28.5 9.0 14 174-187 63-76 (160)
235 PF11365 DUF3166: Protein of u 56.7 41 0.00089 29.5 6.4 63 134-196 4-85 (96)
236 KOG2077 JNK/SAPK-associated pr 56.7 46 0.00099 37.6 8.2 16 326-342 513-528 (832)
237 PF09738 DUF2051: Double stran 56.4 80 0.0017 32.6 9.5 34 149-182 102-135 (302)
238 PF05529 Bap31: B-cell recepto 56.3 57 0.0012 30.5 7.9 26 169-194 157-182 (192)
239 PRK10698 phage shock protein P 56.2 1.2E+02 0.0025 29.7 10.2 20 134-153 55-74 (222)
240 TIGR03017 EpsF chain length de 56.1 1.6E+02 0.0036 30.5 11.9 13 135-147 258-270 (444)
241 PF10779 XhlA: Haemolysin XhlA 56.1 60 0.0013 26.2 6.9 42 148-189 9-50 (71)
242 PF13815 Dzip-like_N: Iguana/D 55.4 49 0.0011 29.1 6.9 41 148-188 76-116 (118)
243 PRK14127 cell division protein 55.4 34 0.00075 30.5 5.9 8 208-215 90-97 (109)
244 KOG0995 Centromere-associated 55.2 44 0.00096 37.4 7.9 18 281-298 417-434 (581)
245 TIGR01843 type_I_hlyD type I s 55.1 90 0.002 31.5 9.6 20 175-194 205-224 (423)
246 KOG2129 Uncharacterized conser 54.9 3.3E+02 0.0072 30.1 15.6 34 126-159 241-274 (552)
247 PF03961 DUF342: Protein of un 54.9 79 0.0017 33.6 9.5 26 138-163 334-359 (451)
248 COG0497 RecN ATPase involved i 54.4 72 0.0016 35.7 9.4 67 127-193 293-369 (557)
249 TIGR02977 phageshock_pspA phag 54.3 1.4E+02 0.003 28.9 10.3 20 135-154 56-75 (219)
250 KOG0804 Cytoplasmic Zn-finger 54.2 80 0.0017 34.7 9.3 45 146-190 376-420 (493)
251 PF14662 CCDC155: Coiled-coil 54.1 80 0.0017 30.9 8.6 51 140-190 90-140 (193)
252 PRK14160 heat shock protein Gr 54.0 87 0.0019 30.9 8.9 44 154-197 56-99 (211)
253 KOG0161 Myosin class II heavy 53.8 1.1E+02 0.0024 39.0 11.6 66 131-196 1449-1514(1930)
254 TIGR02209 ftsL_broad cell divi 53.7 44 0.00095 27.0 5.9 11 212-222 63-73 (85)
255 PF10234 Cluap1: Clusterin-ass 53.5 80 0.0017 32.2 8.9 24 150-173 195-218 (267)
256 TIGR02231 conserved hypothetic 53.5 96 0.0021 33.5 10.0 37 129-165 69-105 (525)
257 PF05615 THOC7: Tho complex su 53.3 1.4E+02 0.0031 26.5 9.6 66 128-193 43-108 (139)
258 PF03961 DUF342: Protein of un 53.3 73 0.0016 33.8 9.0 29 131-159 334-362 (451)
259 TIGR03319 YmdA_YtgF conserved 53.2 1.5E+02 0.0032 32.7 11.4 34 320-353 315-348 (514)
260 PF05266 DUF724: Protein of un 53.1 1E+02 0.0022 29.8 9.1 12 147-158 133-144 (190)
261 PLN02678 seryl-tRNA synthetase 53.1 71 0.0015 34.6 8.9 16 174-189 79-94 (448)
262 PF04201 TPD52: Tumour protein 52.9 38 0.00083 32.2 6.1 40 126-165 24-63 (162)
263 TIGR02209 ftsL_broad cell divi 52.8 48 0.001 26.8 6.0 32 148-179 27-58 (85)
264 PRK10780 periplasmic chaperone 52.7 1.8E+02 0.0038 26.8 10.4 13 206-218 119-131 (165)
265 TIGR03752 conj_TIGR03752 integ 52.6 98 0.0021 34.0 9.8 9 317-325 249-257 (472)
266 PRK03947 prefoldin subunit alp 52.5 59 0.0013 28.9 7.0 53 120-173 84-136 (140)
267 KOG3809 Microtubule-binding pr 52.2 1.2E+02 0.0026 33.5 10.2 39 132-170 480-525 (583)
268 TIGR00414 serS seryl-tRNA synt 52.2 82 0.0018 33.5 9.1 8 384-391 310-317 (418)
269 KOG3671 Actin regulatory prote 52.2 33 0.00072 37.9 6.2 8 328-335 495-502 (569)
270 PF07307 HEPPP_synt_1: Heptapr 52.1 59 0.0013 32.0 7.5 79 345-433 105-183 (212)
271 KOG1830 Wiskott Aldrich syndro 52.1 20 0.00044 38.9 4.6 10 283-292 369-378 (518)
272 PF01920 Prefoldin_2: Prefoldi 52.1 65 0.0014 26.6 6.8 38 130-167 61-98 (106)
273 KOG3397 Acetyltransferases [Ge 51.9 25 0.00053 34.5 4.7 6 74-79 77-82 (225)
274 COG1340 Uncharacterized archae 51.8 98 0.0021 32.1 9.2 46 148-193 203-248 (294)
275 KOG1853 LIS1-interacting prote 51.7 1.4E+02 0.0031 30.8 10.1 9 277-285 235-243 (333)
276 KOG1103 Predicted coiled-coil 51.4 2E+02 0.0043 31.1 11.5 53 142-194 242-294 (561)
277 PF10267 Tmemb_cc2: Predicted 51.2 1.3E+02 0.0028 32.3 10.4 30 130-159 211-240 (395)
278 PF10168 Nup88: Nuclear pore c 51.1 1.1E+02 0.0024 35.1 10.4 19 200-218 604-622 (717)
279 PF10234 Cluap1: Clusterin-ass 51.1 1.1E+02 0.0025 31.1 9.5 69 148-218 172-240 (267)
280 PF06810 Phage_GP20: Phage min 51.1 1.2E+02 0.0027 28.1 9.1 38 132-169 28-68 (155)
281 PF04380 BMFP: Membrane fusoge 51.0 51 0.0011 27.4 5.9 30 158-187 49-78 (79)
282 PF06476 DUF1090: Protein of u 51.0 55 0.0012 29.2 6.5 14 131-144 24-37 (115)
283 COG1196 Smc Chromosome segrega 50.9 84 0.0018 37.5 9.8 45 131-175 376-420 (1163)
284 PF05130 FlgN: FlgN protein; 50.8 1.5E+02 0.0033 24.9 9.4 85 333-417 8-102 (143)
285 PF04012 PspA_IM30: PspA/IM30 50.8 1.7E+02 0.0036 27.8 10.2 45 143-187 96-140 (221)
286 PF03962 Mnd1: Mnd1 family; I 50.5 78 0.0017 30.2 7.9 63 131-194 62-124 (188)
287 PF02994 Transposase_22: L1 tr 50.5 34 0.00074 35.8 5.9 52 315-369 282-343 (370)
288 KOG4825 Component of synaptic 50.4 4.1E+02 0.0088 29.8 21.8 92 328-420 430-525 (666)
289 PRK14127 cell division protein 50.3 50 0.0011 29.5 6.0 10 180-189 58-67 (109)
290 PF00769 ERM: Ezrin/radixin/mo 50.3 1.6E+02 0.0035 29.2 10.3 63 131-193 5-67 (246)
291 TIGR00606 rad50 rad50. This fa 50.2 5.6E+02 0.012 31.3 19.1 193 133-419 890-1088(1311)
292 COG1842 PspA Phage shock prote 50.1 1.9E+02 0.0042 28.6 10.7 12 137-148 58-69 (225)
293 PF10243 MIP-T3: Microtubule-b 49.9 5.4 0.00012 43.3 0.0 22 149-170 460-481 (539)
294 cd00632 Prefoldin_beta Prefold 49.8 78 0.0017 27.0 7.1 35 148-182 66-100 (105)
295 KOG2264 Exostosin EXT1L [Signa 49.6 1E+02 0.0022 35.1 9.5 78 128-207 73-153 (907)
296 PF05278 PEARLI-4: Arabidopsis 49.4 79 0.0017 32.4 8.1 36 159-194 200-235 (269)
297 PF02899 Phage_int_SAM_1: Phag 49.4 27 0.00059 27.1 3.9 54 337-390 21-79 (84)
298 KOG4603 TBP-1 interacting prot 49.3 1.6E+02 0.0034 28.8 9.6 59 136-194 84-144 (201)
299 PRK14158 heat shock protein Gr 49.2 1.1E+02 0.0023 29.8 8.6 43 129-171 38-80 (194)
300 PF01920 Prefoldin_2: Prefoldi 49.0 46 0.001 27.5 5.4 37 146-182 63-99 (106)
301 TIGR01554 major_cap_HK97 phage 48.9 86 0.0019 32.2 8.5 19 134-152 2-20 (378)
302 KOG0996 Structural maintenance 48.9 1.2E+02 0.0026 36.9 10.4 62 133-194 523-584 (1293)
303 KOG4643 Uncharacterized coiled 48.8 1.1E+02 0.0025 36.6 10.1 42 132-173 185-226 (1195)
304 COG1382 GimC Prefoldin, chaper 48.7 1.2E+02 0.0027 27.5 8.3 54 131-184 54-109 (119)
305 PF03233 Cauli_AT: Aphid trans 48.3 84 0.0018 30.1 7.5 60 126-189 99-158 (163)
306 PF02403 Seryl_tRNA_N: Seryl-t 48.1 1.3E+02 0.0029 25.4 8.2 63 131-193 29-94 (108)
307 KOG0288 WD40 repeat protein Ti 47.9 1.7E+02 0.0038 31.9 10.6 50 133-182 15-64 (459)
308 PF11285 DUF3086: Protein of u 47.9 3.4E+02 0.0073 28.1 12.5 27 148-174 7-33 (283)
309 KOG0483 Transcription factor H 47.9 55 0.0012 31.9 6.5 63 128-190 75-150 (198)
310 PF10224 DUF2205: Predicted co 47.9 1.7E+02 0.0037 24.8 8.6 47 147-193 18-64 (80)
311 PF13863 DUF4200: Domain of un 47.6 1.8E+02 0.004 25.0 9.3 20 174-193 82-101 (126)
312 PF07716 bZIP_2: Basic region 47.6 57 0.0012 24.8 5.3 28 152-179 25-52 (54)
313 PF09744 Jnk-SapK_ap_N: JNK_SA 47.6 1.8E+02 0.0038 27.5 9.5 20 164-183 94-113 (158)
314 KOG4010 Coiled-coil protein TP 47.5 44 0.00096 32.8 5.7 45 138-182 37-81 (208)
315 KOG0161 Myosin class II heavy 47.3 1.6E+02 0.0035 37.7 11.6 37 136-172 913-949 (1930)
316 PRK14162 heat shock protein Gr 47.0 2.3E+02 0.0051 27.5 10.5 48 123-170 31-78 (194)
317 KOG0996 Structural maintenance 46.8 89 0.0019 37.9 8.9 63 131-193 935-997 (1293)
318 PRK13923 putative spore coat p 46.4 1.1E+02 0.0024 29.4 8.1 63 131-193 55-145 (170)
319 KOG0933 Structural maintenance 46.2 6.4E+02 0.014 30.8 20.6 99 319-418 846-946 (1174)
320 PF05529 Bap31: B-cell recepto 46.1 1.1E+02 0.0023 28.7 8.0 26 164-189 159-184 (192)
321 PF08647 BRE1: BRE1 E3 ubiquit 46.0 1.3E+02 0.0028 25.6 7.8 47 139-185 4-50 (96)
322 COG1382 GimC Prefoldin, chaper 45.9 79 0.0017 28.7 6.7 40 130-169 69-108 (119)
323 PF13805 Pil1: Eisosome compon 45.9 91 0.002 31.9 7.9 25 169-193 168-192 (271)
324 PF07989 Microtub_assoc: Micro 45.7 1.2E+02 0.0027 25.1 7.4 59 135-193 4-63 (75)
325 PRK11546 zraP zinc resistance 45.7 73 0.0016 29.7 6.7 55 131-185 54-108 (143)
326 KOG0976 Rho/Rac1-interacting s 45.7 1.5E+02 0.0032 35.2 10.1 38 133-170 101-138 (1265)
327 PF13870 DUF4201: Domain of un 45.3 1.8E+02 0.004 26.8 9.3 19 136-154 54-72 (177)
328 PF04108 APG17: Autophagy prot 45.2 4.1E+02 0.0088 28.3 16.0 44 130-173 254-301 (412)
329 PF01763 Herpes_UL6: Herpesvir 45.2 75 0.0016 35.5 7.7 47 142-188 360-406 (557)
330 COG2919 Septum formation initi 45.1 61 0.0013 28.6 5.9 33 149-181 54-86 (117)
331 PTZ00454 26S protease regulato 45.1 72 0.0016 33.7 7.4 28 130-157 14-41 (398)
332 KOG0977 Nuclear envelope prote 45.0 77 0.0017 35.4 7.8 50 144-193 140-189 (546)
333 KOG0977 Nuclear envelope prote 44.8 1.3E+02 0.0027 33.8 9.3 51 139-189 142-192 (546)
334 PF03904 DUF334: Domain of unk 44.5 2.2E+02 0.0049 28.6 10.1 71 140-222 38-108 (230)
335 PF15188 CCDC-167: Coiled-coil 44.4 1E+02 0.0023 26.5 6.9 28 167-194 37-64 (85)
336 PHA02109 hypothetical protein 44.3 43 0.00094 32.7 5.1 21 93-113 138-158 (233)
337 TIGR02132 phaR_Bmeg polyhydrox 44.1 1.4E+02 0.0031 29.1 8.5 97 319-439 38-139 (189)
338 PRK10636 putative ABC transpor 44.1 1.1E+02 0.0023 34.2 8.8 7 208-214 620-626 (638)
339 PRK04863 mukB cell division pr 44.0 1.2E+02 0.0026 37.7 9.8 52 330-381 520-573 (1486)
340 PF10498 IFT57: Intra-flagella 43.9 2.7E+02 0.0059 29.4 11.3 20 150-169 239-258 (359)
341 PRK04863 mukB cell division pr 43.8 1.2E+02 0.0026 37.7 9.8 12 285-296 516-527 (1486)
342 PRK02224 chromosome segregatio 43.8 1.1E+02 0.0025 34.7 9.1 7 418-424 816-822 (880)
343 PF10205 KLRAQ: Predicted coil 43.7 1.2E+02 0.0026 27.0 7.3 23 161-183 49-71 (102)
344 TIGR00219 mreC rod shape-deter 43.5 65 0.0014 32.5 6.5 13 170-182 95-107 (283)
345 PF03670 UPF0184: Uncharacteri 43.1 1.3E+02 0.0027 26.0 7.1 46 144-189 25-70 (83)
346 PTZ00454 26S protease regulato 42.9 1E+02 0.0023 32.5 8.1 47 148-194 18-64 (398)
347 PF06160 EzrA: Septation ring 42.8 95 0.0021 34.2 8.1 89 349-437 294-385 (560)
348 PRK10698 phage shock protein P 42.7 1.8E+02 0.004 28.4 9.3 36 153-188 100-135 (222)
349 PF12808 Mto2_bdg: Micro-tubul 42.5 87 0.0019 24.7 5.6 39 148-186 11-49 (52)
350 PF12128 DUF3584: Protein of u 42.5 2.1E+02 0.0045 34.5 11.4 40 135-174 604-643 (1201)
351 TIGR01730 RND_mfp RND family e 42.2 1.8E+02 0.0038 28.2 9.0 29 136-164 62-90 (322)
352 PF07412 Geminin: Geminin; In 42.1 99 0.0021 30.4 7.2 55 131-193 115-169 (200)
353 PRK03992 proteasome-activating 42.0 85 0.0018 32.7 7.3 27 163-189 19-45 (389)
354 PLN02320 seryl-tRNA synthetase 41.8 1.2E+02 0.0026 33.5 8.6 23 371-393 357-380 (502)
355 PF08232 Striatin: Striatin fa 41.6 1.2E+02 0.0025 27.6 7.2 65 130-194 3-74 (134)
356 PF09755 DUF2046: Uncharacteri 41.6 2.9E+02 0.0063 28.9 10.8 16 148-163 109-124 (310)
357 TIGR02977 phageshock_pspA phag 41.5 2.2E+02 0.0047 27.5 9.5 38 144-181 98-135 (219)
358 PRK09343 prefoldin subunit bet 41.5 1.3E+02 0.0029 26.7 7.4 23 167-189 86-108 (121)
359 PF06428 Sec2p: GDP/GTP exchan 41.4 18 0.0004 31.6 2.0 59 135-193 12-78 (100)
360 PF03980 Nnf1: Nnf1 ; InterPr 41.4 1.5E+02 0.0032 25.4 7.5 28 159-186 80-107 (109)
361 PF15290 Syntaphilin: Golgi-lo 41.4 1.5E+02 0.0033 30.8 8.7 63 104-182 55-117 (305)
362 PF13870 DUF4201: Domain of un 41.4 2.2E+02 0.0047 26.3 9.2 49 137-185 83-131 (177)
363 PF02388 FemAB: FemAB family; 41.3 1.4E+02 0.003 31.4 8.8 35 124-158 235-269 (406)
364 PF13815 Dzip-like_N: Iguana/D 41.2 1E+02 0.0022 27.1 6.6 38 156-193 77-114 (118)
365 PRK14950 DNA polymerase III su 41.2 57 0.0012 36.0 6.1 33 317-352 459-491 (585)
366 KOG4657 Uncharacterized conser 40.9 2.7E+02 0.0059 28.2 10.1 9 288-296 221-229 (246)
367 KOG4010 Coiled-coil protein TP 40.9 95 0.0021 30.6 6.8 35 160-194 45-79 (208)
368 COG1340 Uncharacterized archae 40.8 2.6E+02 0.0057 29.0 10.3 60 135-194 17-76 (294)
369 PF05276 SH3BP5: SH3 domain-bi 40.8 1.6E+02 0.0035 29.5 8.7 40 125-165 2-41 (239)
370 COG5185 HEC1 Protein involved 40.6 1.4E+02 0.0031 33.2 8.7 33 321-356 474-506 (622)
371 KOG0614 cGMP-dependent protein 40.6 5.8E+02 0.013 29.3 13.4 48 142-189 21-68 (732)
372 KOG4643 Uncharacterized coiled 40.5 2.6E+02 0.0055 33.9 11.2 11 317-327 788-798 (1195)
373 PRK04778 septation ring format 40.4 5.4E+02 0.012 28.4 19.0 23 386-408 510-533 (569)
374 PF06818 Fez1: Fez1; InterPro 40.3 1.1E+02 0.0023 30.3 7.1 60 130-189 9-68 (202)
375 KOG0963 Transcription factor/C 40.2 1.6E+02 0.0034 33.5 9.2 56 135-190 282-341 (629)
376 PF04350 PilO: Pilus assembly 40.2 27 0.00058 30.4 2.8 60 149-218 3-65 (144)
377 PF15233 SYCE1: Synaptonemal c 40.1 3E+02 0.0066 25.6 9.5 38 132-169 21-58 (134)
378 KOG0976 Rho/Rac1-interacting s 39.9 1.3E+02 0.0029 35.5 8.7 56 134-189 95-150 (1265)
379 COG4985 ABC-type phosphate tra 39.9 1.8E+02 0.0039 29.7 8.7 87 116-212 149-254 (289)
380 COG3206 GumC Uncharacterized p 39.7 2.3E+02 0.005 30.0 10.1 39 130-168 327-365 (458)
381 PF05911 DUF869: Plant protein 39.6 1.4E+02 0.003 34.7 9.0 50 139-188 618-667 (769)
382 COG1842 PspA Phage shock prote 39.5 2.1E+02 0.0046 28.3 9.2 45 149-193 96-140 (225)
383 KOG0243 Kinesin-like protein [ 39.4 1.6E+02 0.0036 35.3 9.6 26 130-155 447-472 (1041)
384 TIGR03007 pepcterm_ChnLen poly 39.4 3.7E+02 0.0081 28.5 11.6 22 153-174 318-339 (498)
385 PF05103 DivIVA: DivIVA protei 39.3 22 0.00047 30.7 2.1 42 147-188 34-75 (131)
386 PF02050 FliJ: Flagellar FliJ 39.3 2.1E+02 0.0045 23.2 8.6 56 135-190 16-76 (123)
387 PF07200 Mod_r: Modifier of ru 39.3 2.5E+02 0.0054 25.1 8.9 31 159-189 55-85 (150)
388 KOG0971 Microtubule-associated 39.2 1.8E+02 0.004 34.8 9.7 31 358-388 730-762 (1243)
389 PTZ00464 SNF-7-like protein; P 39.2 2.7E+02 0.0058 27.3 9.7 64 131-194 18-89 (211)
390 PF05546 She9_MDM33: She9 / Md 39.1 2.5E+02 0.0055 27.8 9.5 57 131-187 9-67 (207)
391 PF12709 Kinetocho_Slk19: Cent 39.0 1.8E+02 0.0038 25.3 7.4 39 152-190 34-73 (87)
392 PRK14160 heat shock protein Gr 39.0 1.4E+02 0.0031 29.4 7.8 24 148-171 57-80 (211)
393 PRK13922 rod shape-determining 39.0 81 0.0017 31.0 6.3 21 163-183 73-93 (276)
394 PF10046 BLOC1_2: Biogenesis o 38.9 2.5E+02 0.0054 24.0 9.0 58 135-192 24-85 (99)
395 COG3352 FlaC Putative archaeal 38.6 1.5E+02 0.0033 28.2 7.6 69 121-189 34-102 (157)
396 COG3352 FlaC Putative archaeal 38.6 2.2E+02 0.0047 27.2 8.6 45 126-170 67-111 (157)
397 PF03670 UPF0184: Uncharacteri 38.4 2.5E+02 0.0055 24.2 8.2 51 124-174 19-69 (83)
398 KOG0980 Actin-binding protein 38.3 2.3E+02 0.0049 33.8 10.2 53 137-189 350-402 (980)
399 TIGR01242 26Sp45 26S proteasom 38.2 70 0.0015 32.6 5.9 33 153-185 7-39 (364)
400 PRK03947 prefoldin subunit alp 38.1 1.6E+02 0.0035 26.1 7.5 51 131-181 87-137 (140)
401 PLN02678 seryl-tRNA synthetase 38.1 2.3E+02 0.005 30.8 9.9 49 146-194 41-92 (448)
402 PF05600 DUF773: Protein of un 37.9 2E+02 0.0044 31.6 9.6 46 149-194 436-481 (507)
403 PRK00106 hypothetical protein; 37.8 3.6E+02 0.0078 30.2 11.5 36 319-354 335-370 (535)
404 KOG4196 bZIP transcription fac 37.6 1.1E+02 0.0024 28.4 6.4 23 169-191 77-99 (135)
405 PF15035 Rootletin: Ciliary ro 37.6 2.6E+02 0.0055 26.8 9.1 54 136-189 65-118 (182)
406 PRK09413 IS2 repressor TnpA; R 37.5 1.5E+02 0.0033 25.8 7.1 59 131-189 30-101 (121)
407 PHA03395 p10 fibrous body prot 37.5 1.1E+02 0.0024 26.6 5.9 48 331-378 5-54 (87)
408 PF07407 Seadorna_VP6: Seadorn 37.5 48 0.001 35.1 4.5 31 159-189 32-62 (420)
409 PF09789 DUF2353: Uncharacteri 37.1 2.3E+02 0.0051 29.7 9.4 70 126-195 121-218 (319)
410 PF08286 Spc24: Spc24 subunit 37.0 11 0.00024 33.0 0.0 8 288-295 64-71 (118)
411 PF09177 Syntaxin-6_N: Syntaxi 37.0 1.7E+02 0.0036 24.7 7.1 59 131-190 5-63 (97)
412 PF04849 HAP1_N: HAP1 N-termin 36.8 3.2E+02 0.0069 28.6 10.3 26 133-158 162-187 (306)
413 PF14257 DUF4349: Domain of un 36.7 1.8E+02 0.0039 28.4 8.3 23 170-192 166-188 (262)
414 KOG3270 Uncharacterized conser 36.6 2.2E+02 0.0047 28.9 8.8 31 159-189 115-145 (244)
415 PF11382 DUF3186: Protein of u 36.6 1.1E+02 0.0024 31.3 7.0 48 142-189 29-76 (308)
416 PF06216 RTBV_P46: Rice tungro 36.3 1.6E+02 0.0035 30.4 7.9 54 136-189 62-115 (389)
417 KOG0933 Structural maintenance 36.2 2.5E+02 0.0055 33.9 10.3 44 147-190 817-860 (1174)
418 PF07989 Microtub_assoc: Micro 36.2 1.2E+02 0.0027 25.1 5.9 28 159-186 43-70 (75)
419 PF10481 CENP-F_N: Cenp-F N-te 36.1 1.2E+02 0.0026 31.4 7.0 56 132-187 19-81 (307)
420 PRK05431 seryl-tRNA synthetase 36.1 2.6E+02 0.0056 29.9 9.8 25 164-188 71-95 (425)
421 KOG2751 Beclin-like protein [S 36.0 2.1E+02 0.0045 31.4 9.0 40 149-188 180-219 (447)
422 KOG3215 Uncharacterized conser 36.0 62 0.0013 32.2 4.8 42 115-158 82-123 (222)
423 PRK14143 heat shock protein Gr 35.8 2.1E+02 0.0046 28.6 8.6 42 129-170 65-106 (238)
424 PF01025 GrpE: GrpE; InterPro 35.8 1.1E+02 0.0024 27.6 6.2 42 129-170 9-50 (165)
425 cd00890 Prefoldin Prefoldin is 35.7 1.5E+02 0.0032 25.4 6.7 40 131-170 87-126 (129)
426 PRK14154 heat shock protein Gr 35.7 1.8E+02 0.0039 28.7 7.9 40 134-173 55-94 (208)
427 KOG0963 Transcription factor/C 35.6 6E+02 0.013 29.2 12.7 10 219-228 429-438 (629)
428 PF07798 DUF1640: Protein of u 35.5 3.2E+02 0.0069 25.5 9.3 8 207-214 150-157 (177)
429 PRK06975 bifunctional uroporph 35.5 2.4E+02 0.0052 31.9 9.9 46 148-193 367-412 (656)
430 PF15254 CCDC14: Coiled-coil d 35.4 2.4E+02 0.0051 33.2 9.8 91 131-221 441-557 (861)
431 PF04201 TPD52: Tumour protein 35.3 4.1E+02 0.0089 25.5 10.7 43 140-182 24-66 (162)
432 PF12795 MscS_porin: Mechanose 35.0 2.6E+02 0.0057 27.1 9.0 66 128-193 75-140 (240)
433 TIGR00998 8a0101 efflux pump m 35.0 2.8E+02 0.0062 27.4 9.4 65 141-218 76-140 (334)
434 KOG4196 bZIP transcription fac 34.8 1.5E+02 0.0033 27.5 6.8 33 157-189 79-111 (135)
435 KOG4001 Axonemal dynein light 34.7 2.7E+02 0.0058 28.0 8.9 18 171-188 197-214 (259)
436 PF06785 UPF0242: Uncharacteri 34.6 3.8E+02 0.0083 28.7 10.5 28 130-157 88-118 (401)
437 PF12999 PRKCSH-like: Glucosid 34.5 2.6E+02 0.0056 27.1 8.6 38 149-186 136-173 (176)
438 PRK01156 chromosome segregatio 34.3 1.8E+02 0.004 33.3 8.9 6 178-183 700-705 (895)
439 PF08581 Tup_N: Tup N-terminal 34.2 2.9E+02 0.0062 23.3 8.1 49 145-193 4-52 (79)
440 PF10018 Med4: Vitamin-D-recep 34.1 2.5E+02 0.0054 26.5 8.4 17 283-299 125-141 (188)
441 PF04420 CHD5: CHD5-like prote 34.0 1.2E+02 0.0027 28.1 6.3 51 139-193 41-93 (161)
442 PF03980 Nnf1: Nnf1 ; InterPr 33.8 1.1E+02 0.0023 26.2 5.5 34 146-179 74-107 (109)
443 PF14988 DUF4515: Domain of un 33.8 2.7E+02 0.0059 27.1 8.8 24 134-157 50-73 (206)
444 PRK03992 proteasome-activating 33.8 1.3E+02 0.0028 31.4 7.1 35 152-186 15-49 (389)
445 PF09787 Golgin_A5: Golgin sub 33.7 1.3E+02 0.0029 32.7 7.4 9 135-143 218-226 (511)
446 PRK15396 murein lipoprotein; P 33.7 2.4E+02 0.0053 23.8 7.4 7 152-158 32-38 (78)
447 KOG1830 Wiskott Aldrich syndro 33.7 87 0.0019 34.3 5.8 10 398-407 494-503 (518)
448 PF07334 IFP_35_N: Interferon- 33.7 82 0.0018 26.7 4.5 29 161-189 2-30 (76)
449 PF02388 FemAB: FemAB family; 33.7 1.1E+02 0.0024 32.2 6.6 41 149-189 246-289 (406)
450 PF06717 DUF1202: Protein of u 33.6 1.6E+02 0.0035 30.7 7.4 56 149-207 135-190 (308)
451 PF10018 Med4: Vitamin-D-recep 33.6 3.8E+02 0.0082 25.3 9.6 30 160-189 30-59 (188)
452 PRK04778 septation ring format 33.5 1.6E+02 0.0036 32.3 8.1 49 358-406 309-358 (569)
453 PF15619 Lebercilin: Ciliary p 33.4 1.7E+02 0.0038 28.2 7.4 33 160-192 76-108 (194)
454 KOG0018 Structural maintenance 33.3 9.9E+02 0.022 29.3 17.2 102 316-422 338-460 (1141)
455 TIGR00570 cdk7 CDK-activating 33.3 5.5E+02 0.012 26.9 11.3 41 132-172 91-140 (309)
456 PF10205 KLRAQ: Predicted coil 33.2 3.5E+02 0.0077 24.1 10.6 64 146-218 6-69 (102)
457 cd00890 Prefoldin Prefoldin is 32.9 2E+02 0.0042 24.6 7.0 35 136-170 85-119 (129)
458 PF05700 BCAS2: Breast carcino 32.8 4E+02 0.0086 25.9 9.8 33 162-194 178-210 (221)
459 COG1729 Uncharacterized protei 32.8 1.1E+02 0.0023 31.3 6.0 42 147-189 58-99 (262)
460 KOG4360 Uncharacterized coiled 32.8 1.8E+02 0.0039 32.7 8.0 9 288-296 408-416 (596)
461 KOG0837 Transcriptional activa 32.8 2.4E+02 0.0053 29.1 8.5 14 12-26 80-93 (279)
462 KOG0995 Centromere-associated 32.5 3.3E+02 0.0071 30.9 10.1 22 335-356 444-465 (581)
463 PF05103 DivIVA: DivIVA protei 32.5 40 0.00086 29.1 2.7 39 133-171 27-65 (131)
464 KOG4460 Nuclear pore complex, 32.5 3.6E+02 0.0077 30.8 10.3 35 139-173 603-637 (741)
465 PF05384 DegS: Sensor protein 32.4 4.4E+02 0.0095 24.9 10.0 57 133-189 15-71 (159)
466 TIGR01069 mutS2 MutS2 family p 32.3 3.4E+02 0.0074 31.4 10.6 89 127-215 493-581 (771)
467 COG2960 Uncharacterized protei 32.3 2.6E+02 0.0056 25.0 7.5 50 141-190 37-90 (103)
468 PF10174 Cast: RIM-binding pro 32.3 2.3E+02 0.005 33.0 9.2 63 133-195 324-386 (775)
469 KOG1029 Endocytic adaptor prot 32.2 2.4E+02 0.0053 33.3 9.2 64 129-192 526-589 (1118)
470 PF12128 DUF3584: Protein of u 32.1 2.6E+02 0.0057 33.7 10.1 82 133-215 609-690 (1201)
471 PF10458 Val_tRNA-synt_C: Valy 32.0 1.7E+02 0.0037 23.2 5.9 57 130-186 3-66 (66)
472 PF04949 Transcrip_act: Transc 32.0 4.6E+02 0.01 25.1 10.5 75 126-215 79-153 (159)
473 PRK13922 rod shape-determining 31.9 1.8E+02 0.0039 28.6 7.4 46 145-190 62-110 (276)
474 PRK14148 heat shock protein Gr 31.7 2.3E+02 0.0049 27.7 7.8 57 121-177 30-86 (195)
475 PF08702 Fib_alpha: Fibrinogen 31.6 2.6E+02 0.0056 25.9 7.9 60 130-191 77-136 (146)
476 PF05384 DegS: Sensor protein 31.5 3.5E+02 0.0075 25.6 8.8 57 137-193 76-132 (159)
477 PF10212 TTKRSYEDQ: Predicted 31.5 3E+02 0.0066 30.7 9.6 65 129-193 411-475 (518)
478 PF09728 Taxilin: Myosin-like 31.4 4.5E+02 0.0098 27.1 10.4 84 130-218 42-125 (309)
479 PF12709 Kinetocho_Slk19: Cent 31.1 1.5E+02 0.0032 25.7 5.8 35 144-178 48-82 (87)
480 PF14739 DUF4472: Domain of un 31.1 2.5E+02 0.0055 25.2 7.4 57 137-193 3-69 (108)
481 KOG3397 Acetyltransferases [Ge 31.1 44 0.00095 32.8 2.9 34 242-275 163-196 (225)
482 PF01486 K-box: K-box region; 31.1 3.1E+02 0.0067 23.2 7.8 56 126-183 44-99 (100)
483 PF07304 SRA1: Steroid recepto 31.1 1.9E+02 0.0042 26.9 7.0 110 241-384 3-114 (157)
484 PF04912 Dynamitin: Dynamitin 31.0 3.1E+02 0.0067 28.7 9.3 60 134-193 325-388 (388)
485 PF03938 OmpH: Outer membrane 31.0 3.1E+02 0.0067 24.4 8.2 87 134-221 32-123 (158)
486 PF01519 DUF16: Protein of unk 30.9 3.7E+02 0.0079 24.1 8.3 59 135-203 41-101 (102)
487 KOG2236 Uncharacterized conser 30.8 56 0.0012 35.8 3.9 45 241-285 431-481 (483)
488 PRK13855 type IV secretion sys 30.8 88 0.0019 33.5 5.3 62 215-285 46-114 (376)
489 KOG2010 Double stranded RNA bi 30.8 2.4E+02 0.0052 30.1 8.2 86 127-214 115-207 (405)
490 KOG0239 Kinesin (KAR3 subfamil 30.7 2.7E+02 0.0059 31.9 9.3 84 131-215 227-312 (670)
491 PF14235 DUF4337: Domain of un 30.6 2.9E+02 0.0063 25.8 8.2 58 131-188 48-109 (157)
492 PRK14148 heat shock protein Gr 30.6 3.5E+02 0.0076 26.4 8.9 70 134-221 27-98 (195)
493 PF02994 Transposase_22: L1 tr 30.6 1.9E+02 0.0042 30.3 7.7 59 131-189 130-188 (370)
494 PF10046 BLOC1_2: Biogenesis o 30.5 3.5E+02 0.0075 23.2 9.4 61 132-192 36-99 (99)
495 TIGR01000 bacteriocin_acc bact 30.5 2.9E+02 0.0064 29.3 9.2 62 131-192 165-262 (457)
496 PF07058 Myosin_HC-like: Myosi 30.3 1E+02 0.0022 32.4 5.5 44 146-189 1-51 (351)
497 PRK14140 heat shock protein Gr 30.3 1.3E+02 0.0028 29.2 5.9 80 137-216 15-94 (191)
498 PF07058 Myosin_HC-like: Myosi 30.3 3.3E+02 0.0071 28.9 9.0 85 124-211 1-102 (351)
499 KOG0241 Kinesin-like protein [ 30.2 2.7E+02 0.0059 33.9 9.2 66 120-185 353-430 (1714)
500 PF15397 DUF4618: Domain of un 30.1 4.3E+02 0.0093 27.0 9.7 87 131-222 67-153 (258)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=3.7e-09 Score=115.69 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=23.3
Q ss_pred CCCCCCcccccCCCCCchhh-------HHhHHhhhhcc
Q 013627 269 PPPPRPPARAAATQKTPSFA-------QLYHSLTKQVE 299 (439)
Q Consensus 269 PpPp~p~~g~~~~~rsP~vv-------eLY~sLk~K~~ 299 (439)
||||||+.|+.|+...|+.. -|+++|++|+.
T Consensus 582 ppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkpKK~ 619 (1102)
T KOG1924|consen 582 PPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKPKKV 619 (1102)
T ss_pred CCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCcccc
Confidence 45555557787777777665 78999999985
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.15 E-value=1.2e-05 Score=89.13 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=8.2
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFA 156 (439)
Q Consensus 139 kLe~sEnlIkeLqSELea 156 (439)
+.++++..-.+|+.+++.
T Consensus 468 k~eeseqkA~e~~kk~~k 485 (1102)
T KOG1924|consen 468 KAEESEQKAAELEKKFDK 485 (1102)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444455554443
No 3
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=97.65 E-value=0.00049 Score=68.10 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhchh
Q 013627 174 QNKKLVEDLVAAEAKIASLSSR 195 (439)
Q Consensus 174 EnkELr~ELa~aeaQI~sL~s~ 195 (439)
++..|+.||..|++||+.+..+
T Consensus 123 KIsALEdELs~LRaQIA~IV~~ 144 (253)
T PF05308_consen 123 KISALEDELSRLRAQIAKIVAA 144 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666677777888777653
No 4
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.85 E-value=0.1 Score=42.93 Aligned_cols=62 Identities=26% Similarity=0.257 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.-.+|+.++...=..|.-|+.++..|+.++..+.+.|..|+.+|..|+++.......|.+|=
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888999999999999888888999999999988888877777765443
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.80 E-value=0.037 Score=62.09 Aligned_cols=40 Identities=8% Similarity=0.045 Sum_probs=21.4
Q ss_pred hhhhhHHHHHHhhcCCCcccHHHHHHHHHHhhhHhhHHHH
Q 013627 375 LSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENE 414 (439)
Q Consensus 375 Ls~L~DEr~VLk~F~wPekK~dalReAa~~Y~~L~~l~~e 414 (439)
++.|+||..++-.|.-=|.-.+.|-.-.+.|.-+++++..
T Consensus 504 me~Ls~edkFml~lskIErle~klatM~~m~nF~dsv~ll 543 (830)
T KOG1923|consen 504 MENLSEEDKFMLSLSKIERLEEKLATMEFMGNFPDSVQLL 543 (830)
T ss_pred hhhcccchhhhhhhhhhhhhHHHHHHHHHHHhchhhhhhh
Confidence 5667777776666622223333333344666666665543
No 6
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.55 E-value=0.19 Score=54.08 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=52.8
Q ss_pred CCCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 120 NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 120 ~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
-+++|..+.|++. =+-+|++.+....+|+.+|+.++.|++.+.....++|.++++|+.++.+++.|+..+.
T Consensus 54 ~~~vV~~~FddkV---nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 54 MTGVVDTTFDDKV---RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred ccceecchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666665552 2456777777788888899988888888888888888888888888888888874333
No 7
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.2 Score=50.45 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s 191 (439)
++.++++++.+.-.++.|+.|..++..+..+...++.++++++.+++.|++++..++..|.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666665533
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=94.41 E-value=0.27 Score=43.23 Aligned_cols=55 Identities=31% Similarity=0.303 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
|++|=+.|...+..+..|..++..|+..+..+.+.|..|+-||..|+..|...+.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788899999999999999999999999999999999999999999999988776
No 9
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.62 E-value=0.81 Score=38.66 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE-------LEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE-------LEkEnkELr~ELa~aeaQI 189 (439)
+-.+|++|++.+=..|.-|+.+|+.|++++..+.+.++. |+.+|..|+++-..-..-+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888889999998888888888877766 5555555555554444443
No 10
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.59 E-value=0.45 Score=42.16 Aligned_cols=54 Identities=33% Similarity=0.252 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
|++|=+.|...+..+..+..++..|+..+..+.+.|..|+-||..|+..|...+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999999999999999999999999999998764
No 11
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.44 E-value=0.39 Score=47.78 Aligned_cols=62 Identities=27% Similarity=0.289 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..++.+||++...+..+|..++..+..+++..+++...|+.|+..|+..+..+..++..|+.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 45667777777777777777888888888888888888888888777777777776665554
No 12
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.98 E-value=0.65 Score=46.84 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhh
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~ 209 (439)
.+.+..-+-+|...++..++++.+|+.|...+..++...++++.++.+++.++..++.+|..+.. .+.+|+-.+-
T Consensus 30 ~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~-----~I~~r~~~l~ 104 (265)
T COG3883 30 SDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE-----NIVERQELLK 104 (265)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 34478888999999999999999999999999999999999999999999999999999988885 2334444444
Q ss_pred HHHHH
Q 013627 210 KDVQK 214 (439)
Q Consensus 210 KkIQk 214 (439)
++.+-
T Consensus 105 ~raRA 109 (265)
T COG3883 105 KRARA 109 (265)
T ss_pred HHHHH
Confidence 44433
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.14 E-value=0.82 Score=44.29 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 157 LkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
++.++..+.+...+|+.+|.+|++++..++.++..+..
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666666666666655554
No 14
>PRK11637 AmiB activator; Provisional
Probab=92.07 E-value=1.8 Score=45.31 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
..+++++++++..++.++++++++..+..++..+..+...++.++..++.++..++.+|.
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~ 106 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID 106 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666665555555555555555555444444444444444444444444443
No 15
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.97 E-value=0.42 Score=54.09 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=4.1
Q ss_pred HHHHHHhhc
Q 013627 380 DERAVLKHF 388 (439)
Q Consensus 380 DEr~VLk~F 388 (439)
+|+..++.|
T Consensus 489 ~E~kl~~~~ 497 (830)
T KOG1923|consen 489 AEVKLLREY 497 (830)
T ss_pred HHHHHHHHh
Confidence 344444444
No 16
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.81 E-value=1.1 Score=41.17 Aligned_cols=57 Identities=33% Similarity=0.407 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+.+|+++|...+..++.|+.+|..|...+ .+++|..++..|+.++..++..+..|.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555443 2344455555555555555555555443
No 17
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.69 E-value=1.3 Score=43.11 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+....+++++.-..+.++|..++..+..|++.+...|+.|++.+..+++++..++.++.++..
T Consensus 36 ~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 36 AAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777788888888888888888888888888888888888887766654
No 18
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.69 E-value=2.3 Score=34.17 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=39.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
||.-|+.--.-++.++.+|...+..+-.+..++.+-+..|.+|..+|..++.++..++
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555545556666667667767777777777777777777778877777765554
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.68 E-value=2.6 Score=46.48 Aligned_cols=170 Identities=21% Similarity=0.171 Sum_probs=81.3
Q ss_pred ccCCccccccCccc--cccccccCCCCCcccccccCcccCcc--hhccccc-cCcccccccccccchhhccCC---CCCC
Q 013627 10 TNNMSHSTAATTTF--RLRANSKTRESPKQEAGINGVSLSPE--LKARAKS-VPADVKTNNISKSRRALILNK---PKSA 81 (439)
Q Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s-~~~~~~~~~~sk~~rs~~lnk---pk~~ 81 (439)
.||+..+--|.+.- .........-++..-+||-.|..++- .-+-.-+ +|.+.. +.+-....|..+. ||.+
T Consensus 9 F~nV~~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~rdY~Tf~Wa~~p~~~~--~~s~~~~~V~F~ayyLPk~~ 86 (546)
T PF07888_consen 9 FNNVAKSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSSTRDYYTFVWAPVPENYV--EGSAVNCQVQFQAYYLPKDD 86 (546)
T ss_pred EeccccccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCchhheeeEEeeccCcccc--CCCccceEEEECcccCCCCC
Confidence 35666665555543 44455555677788888877766551 1111122 233333 5555666888886 8875
Q ss_pred CCc-CCCCCCcccceeeeecCccchhcccCccccccccCCCCcccc--CcchH-----HHHHHHHHHHHhHHHHHHHHHH
Q 013627 82 EGA-VGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIED--GLMDK-----KKKEFEEKLMLSENLVKDLQSE 153 (439)
Q Consensus 82 ~~~-~gs~~~e~~~~~~~s~~R~~v~qf~~~r~~~~~~~~~~~~~~--~~d~~-----~k~eLqEkLe~sEnlIkeLqSE 153 (439)
.+. ..---+-.+.|++.|.| =||..|++ .+ --+.++| +.+|- .-.-||.+|+..+.+..+|...
T Consensus 87 ~e~YqfcYv~~~g~V~G~S~p----Fqf~~~~p---~e-eLvtle~e~~~~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~ 158 (546)
T PF07888_consen 87 DEFYQFCYVDQKGEVRGASTP----FQFRAPKP---LE-ELVTLEDEDGNSDMLVVTTKAQLLQNQLEECQKEKEELLKE 158 (546)
T ss_pred CCeEEEEEECCCccEEEecCC----cccCCCCc---cc-cceeecccCCCcceEEEehhHHHHHHHHHHHHHHHHHHHHH
Confidence 432 11111122335555543 25555442 11 1122222 11110 0122455666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
...|.+++..++.+++.|+.+....+.+...++.+.
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555544444444444443333
No 20
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=90.92 E-value=1.5 Score=42.20 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=68.5
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhc
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEF--VKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGE 203 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkEl--ekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E 203 (439)
+.+.+..+..|+++++.....|...+.+|..|.+-+ .++|+..++|.+++.+.+..|..+++-+.....-+++..-.+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~ 160 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYRE 160 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 456677788999999999999999999998888654 457778888888888888888888877766666554444444
Q ss_pred cC--ChhhHHHHHHH
Q 013627 204 YQ--SPKFKDVQKLI 216 (439)
Q Consensus 204 ~q--s~~~KkIQkli 216 (439)
|| ...|+++.++.
T Consensus 161 y~~~~~~wrk~krmf 175 (201)
T KOG4603|consen 161 YQKYCKEWRKRKRMF 175 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44 45788888743
No 21
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.91 E-value=15 Score=40.35 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHhhhhhHH-HHHHhhcCCCcccHHHHHHHHHHhhhHhhHHHHhccccCCCCCcHHHHHHHHHh
Q 013627 372 DKELSSLADE-RAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMAS 435 (439)
Q Consensus 372 d~eLs~L~DE-r~VLk~F~wPekK~dalReAa~~Y~~L~~l~~e~~~~~d~p~~p~~~aL~K~~~ 435 (439)
-++|+.|.+| +.+++.| -.+|..+=|+--.---+.+.||.||...+.--...+-++=+++++
T Consensus 500 ~~~l~~~e~~L~~a~s~~--~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs 562 (622)
T COG5185 500 TQILEKLELELSEANSKF--ELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQS 562 (622)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHH
Confidence 3444455444 3355555 245566666666666677889999988887777666555555443
No 22
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.88 E-value=1.1 Score=41.22 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=49.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhchhhh
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK--QNKKLVEDLVAAEAKIASLSSREQ 197 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk--EnkELr~ELa~aeaQI~sL~s~~~ 197 (439)
++|......|.+|+.++..+..++..+......|.. =+.+|..++..++.++..+..+..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667888888888888888888888888888 478899999999999988887554
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.87 E-value=3.1 Score=38.08 Aligned_cols=58 Identities=28% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
+...+++.+..+..+++|+.+...+..++..|+..+..||.++..+..+|..++..+.
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777777777777777777777777776663
No 24
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=90.83 E-value=0.62 Score=50.37 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=56.1
Q ss_pred cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 124 ~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.++++.+...+-|+++.+.|+.+..|+.+++.+......+++++++|+.||..|+.++..+..+.
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 446677888888888999999999999999998888888888899999999999999987666664
No 25
>PRK11637 AmiB activator; Provisional
Probab=90.76 E-value=1.5 Score=45.76 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
++++.++...++.+.+++.+|..+..++..+....+.++.++..++.++..++.+|..+.
T Consensus 57 ~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 57 AAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555555555555555554444
No 26
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.56 E-value=25 Score=39.31 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
....+-+++|+..+..++++..++..+..++..+.....+++.+..+.+.+...++.++
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555444444444444444433333
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.38 E-value=2.1 Score=41.58 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.+++.++......+..+.++|.+|..|+..++.++..+++++..++.
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666667777766766777777666666666553
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=13 Score=39.27 Aligned_cols=16 Identities=31% Similarity=0.113 Sum_probs=11.7
Q ss_pred cCChhhHHHHHHHHhh
Q 013627 204 YQSPKFKDVQKLIANK 219 (439)
Q Consensus 204 ~qs~~~KkIQklia~~ 219 (439)
.+|.+.--||.+|+--
T Consensus 120 pssdLv~Liq~l~a~f 135 (365)
T KOG2391|consen 120 PSSDLVGLIQELIAAF 135 (365)
T ss_pred ccchHHHHHHHHHHHh
Confidence 3556777899988873
No 29
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=90.01 E-value=3.1 Score=41.40 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------------------------------------------
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAE-------------------------------------------------- 160 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkE-------------------------------------------------- 160 (439)
+...+++.+++..+.+|..|+..|..++..
T Consensus 6 ~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpIVt 85 (248)
T PF08172_consen 6 KELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPIVT 85 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHHHH
Confidence 345677888888999999999888876633
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHH
Q 013627 161 --FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKL 215 (439)
Q Consensus 161 --lekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQkl 215 (439)
-+..+++|.+||.|+..+.+++..++.+|.+|+.-+.+ |.+||.=+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k---------LYEKiRyl 133 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK---------LYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 23467889999999999999999999999999964332 67777655
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=89.75 E-value=2.2 Score=40.38 Aligned_cols=56 Identities=30% Similarity=0.256 Sum_probs=42.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.|.........++++...+..++..|+++|+.|+.|+..|..++...+.....|-
T Consensus 90 q~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 90 QNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555445556777888888888888888888888888888888888777775554
No 31
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.07 E-value=3.8 Score=38.66 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+++.++......+..|+.++..|..++..+.....++++-+..|+.++..+.-++
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444433
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.96 E-value=4.3 Score=33.49 Aligned_cols=51 Identities=22% Similarity=0.222 Sum_probs=31.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
|-++.-+..|+.+=.-+..|+.|+..+++.|..|..++..|+.+..+++.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666666666666666666666666643
No 33
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.89 E-value=8.4 Score=32.31 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELE 172 (439)
+-.+|++|++.+=..|.-|+.+++.|++++..+.+....++
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 56778888888888888888887777766555444443333
No 34
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=88.80 E-value=0.42 Score=51.15 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=8.6
Q ss_pred CCchhhHHhHHhhhh
Q 013627 283 KTPSFAQLYHSLTKQ 297 (439)
Q Consensus 283 rsP~vveLY~sLk~K 297 (439)
....+..||..|..-
T Consensus 260 ~k~~~~AlFaqlNqG 274 (480)
T KOG2675|consen 260 NKGGRGALFAQLNQG 274 (480)
T ss_pred ccccHHHHHHHHhcc
Confidence 334556677766544
No 35
>PRK04406 hypothetical protein; Provisional
Probab=88.46 E-value=3.6 Score=34.09 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ 184 (439)
+.+..++++|...|..+...+.=|+.|++.+...+..++.|+++++.|..++..
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556677766666666666666666666666666666666666666555544
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.87 E-value=4 Score=41.53 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.|......+.++|......+...+.++..++.++..+....+++..+..++..++..++..+
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666555555555555555555555555555555555555555555443
No 37
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.85 E-value=45 Score=37.39 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
......+|+++|+.....|..++.++..+..++.++.+...+.+.++.+++.++...+.-+.-|.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666666666666666666666666666666666666666666666666665555444343
No 38
>PRK09039 hypothetical protein; Validated
Probab=87.84 E-value=4.3 Score=41.95 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=22.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
.|+.+|.....++.+...++..|+.++..|+.++..|+.++..++.+...++.+|.
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~ 175 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433333333333333333
No 39
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.60 E-value=2 Score=32.49 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+|+.....|+...+.+...++.|.+|+..|+.++..+...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555556666666666666666666666665543
No 40
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.33 E-value=4.5 Score=41.49 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=44.1
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
+.|++.-+.++++|......+...+.++..++.++..+....++...+..+++++++.++..+.
T Consensus 200 ~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 200 DCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777777777776677777777777666553
No 41
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.33 E-value=7.1 Score=31.92 Aligned_cols=61 Identities=16% Similarity=0.066 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s 191 (439)
..+.-|++.|+...+.+.-.+..+..|..|......++.....++.+|+.++..++.++..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888887777888888777777777777777778888888777776543
No 42
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.20 E-value=3.7 Score=41.12 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.+++.+|+.+.+|...|.+.+.+||.+..+++..|..++...
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544444444444443333
No 43
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.60 E-value=3.2 Score=32.51 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
..+..|..++..+...|..|..++..|..++..+..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444555555555555555554444
No 44
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.35 E-value=8 Score=34.48 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~ 196 (439)
..+.+++.+|.-.+..+..++.....|.++.+.|...+..|+.++..+.+.+..++++|..+....
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888877788888888888888888888888888888888887666543
No 45
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=86.06 E-value=8.2 Score=32.65 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
.-+.+..||..|..|-.+++..++.++.|+.||..|+.=+..+-+.
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999998887776443
No 46
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.01 E-value=4.3 Score=32.77 Aligned_cols=50 Identities=22% Similarity=0.145 Sum_probs=22.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
+++|...|..+..++.-|+.|+..+...+..++.|+++++.|..+|..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444444444555555555555555555555555555544443
No 47
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.88 E-value=3.5 Score=46.01 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~ 197 (439)
-|+.-.-.+|.+.|...++|+++|+.++..++++++...+-+.|...|++++.+++.+..+|..+++
T Consensus 86 RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 4555556778888888889999999999888888888888888888899999999888877766544
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.77 E-value=6.6 Score=43.42 Aligned_cols=63 Identities=29% Similarity=0.297 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+.+|.......+..+..|+.++..|..++...++.+..|+.+++++......+..+...|.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~ 212 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLK 212 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666666666666666666665555544444444444443333
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.72 E-value=7.9 Score=37.22 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFK 210 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~K 210 (439)
..++.|.+++..........+..+..+..|+..+.+.+..++.++.+|+.++...+..-.+|..... +...+.+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~------rl~~~ek 100 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA------RLKELEK 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 4566777777777777777777778888888888888888888888888888777666655553211 2222455
Q ss_pred HHHHHHHh
Q 013627 211 DVQKLIAN 218 (439)
Q Consensus 211 kIQklia~ 218 (439)
.|..+-|.
T Consensus 101 ~l~~Lk~e 108 (201)
T PF13851_consen 101 ELKDLKWE 108 (201)
T ss_pred HHHHHHHH
Confidence 55555554
No 50
>smart00338 BRLZ basic region leucin zipper.
Probab=85.22 E-value=3.6 Score=32.21 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
.+..|..++..+...|.+|..++..|+.++..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444333
No 51
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.92 E-value=20 Score=35.48 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLN 168 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerN 168 (439)
+.+|+.+...|..|-..+.+.+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444433333
No 52
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=84.67 E-value=8.9 Score=29.99 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
.+|+.++..|..++..|...+..|+.++..|..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444433
No 53
>PF14282 FlxA: FlxA-like protein
Probab=84.60 E-value=4.6 Score=35.10 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 013627 172 EKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 172 EkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+...|+.+|..+++||..|.
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554444
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.48 E-value=14 Score=36.49 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr 179 (439)
....++..++.++..+..++..++..|..|+..+.+++
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 33344444555555555555555555555555444443
No 55
>PRK02119 hypothetical protein; Provisional
Probab=84.06 E-value=7.8 Score=31.88 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ 184 (439)
..++++|...|..+...+.-|+.|+..+...+..++.|++++..|..++..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555555554444444433
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.40 E-value=12 Score=35.44 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
........|...+..+..|+.++..+..++......++.|..|+.-|+-++..++.++..|.
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666666666666665555555555555555555555555555554
No 57
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.34 E-value=9.5 Score=37.23 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.++..+++|..+-..|..++..+..+.+.|+..|..++..+...+.++.+|..
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666666666666666666666666666666665554
No 58
>smart00338 BRLZ basic region leucin zipper.
Probab=83.19 E-value=18 Score=28.35 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+.+|+.++..|..++..|...+..|+.|+..|+.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555554443
No 59
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=83.10 E-value=12 Score=38.59 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKA 159 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkk 159 (439)
++-+.+|..-+.+|.+|++||..+++
T Consensus 78 kes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 78 KESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455666666677777777776663
No 60
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=82.74 E-value=0.39 Score=49.22 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=0.0
Q ss_pred CchhhHHhHHhhh
Q 013627 284 TPSFAQLYHSLTK 296 (439)
Q Consensus 284 sP~vveLY~sLk~ 296 (439)
+..+..||-.|.+
T Consensus 259 ~~~~~AlFaeLN~ 271 (312)
T PF01213_consen 259 SGGMSALFAELNQ 271 (312)
T ss_dssp -------------
T ss_pred cccHHHHHHHHhc
Confidence 4667777777754
No 61
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=82.55 E-value=11 Score=37.89 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~ae 186 (439)
..++...||.|+..|+.|++..-
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777888888888886543
No 62
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=82.54 E-value=2.2 Score=46.56 Aligned_cols=9 Identities=11% Similarity=0.494 Sum_probs=3.5
Q ss_pred hhhhHHHHH
Q 013627 317 AHSSIVGEI 325 (439)
Q Consensus 317 a~~~mIgEI 325 (439)
++.++++-|
T Consensus 494 gR~~LmaqI 502 (569)
T KOG3671|consen 494 GRDALMAQI 502 (569)
T ss_pred cHHHHHHHH
Confidence 334444333
No 63
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=82.35 E-value=13 Score=31.36 Aligned_cols=49 Identities=27% Similarity=0.321 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
=++|..+|...+++|..|..-+..|+.++..+.+.|..|+.++..++..
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888999999999999999999999999999999988877666654
No 64
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.23 E-value=10 Score=41.96 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
.|+.++..+.+++..++.....++.++..++.++..++.++..+
T Consensus 425 ~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 425 QLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444555554555444433
No 65
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.03 E-value=11 Score=30.35 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
|+.|+++|.-+......++++| .....+|.+|+.++..|+.++..+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kL-------qeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKL-------QEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444433444443 334444444444444444444433
No 66
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=81.99 E-value=14 Score=34.18 Aligned_cols=30 Identities=33% Similarity=0.325 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekL 164 (439)
...++|..+++....|+..+.+|..++...
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 67
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.90 E-value=82 Score=34.14 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=17.9
Q ss_pred hhhhHHHHHhcchhhHHHHHHHHHhhhhhhH
Q 013627 317 AHSSIVGEIQNRSAHLLAIKADIETKGGFIN 347 (439)
Q Consensus 317 a~~~mIgEIenRSa~llaIk~DVe~~~~~I~ 347 (439)
++...|+.+++=-.-|.+++.+++....-+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655556666666665444433
No 68
>PRK00295 hypothetical protein; Provisional
Probab=81.61 E-value=12 Score=30.30 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
|+.|++.+...+..++.|++++..|..++...
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444455555555555544443
No 69
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=81.51 E-value=2.5 Score=45.69 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=54.9
Q ss_pred hHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 130 DKKKKEF--EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 130 ~~~k~eL--qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+|+++. ||.=.-.+.+|+-|+..+....+|+..|+++..+||.+|.-|-+||..+++.+.+..
T Consensus 255 RKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 255 RKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred HHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcc
Confidence 4677766 777777778888999999999999999999999999999999999999998886544
No 70
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=81.50 E-value=4.7 Score=35.15 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
..+++.++..++.++..++++|+.|+.|+..|+......
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyi 67 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAI 67 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 345666777777777777777777777666666543333
No 71
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.41 E-value=6.7 Score=29.66 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa 183 (439)
.|..+.-|+...+.|..++..++..|+.|..|+..|.+.+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46777888888899999999999999999998888888764
No 72
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=81.36 E-value=1.1 Score=48.08 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=9.2
Q ss_pred cccCCCCCchhhHHhHH
Q 013627 277 RAAATQKTPSFAQLYHS 293 (439)
Q Consensus 277 g~~~~~rsP~vveLY~s 293 (439)
-.....++-=+.+|-++
T Consensus 258 ~~~k~~~~AlFaqlNqG 274 (480)
T KOG2675|consen 258 DANKGGRGALFAQLNQG 274 (480)
T ss_pred ccccccHHHHHHHHhcc
Confidence 34455555555665554
No 73
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.11 E-value=13 Score=32.43 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFAL--KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaL--kkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.-..+|.+++...++-+..++.++..| ..++..++-...+++-+++.+.++++....+.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777776 66666655555555555555555555544443
No 74
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.04 E-value=13 Score=41.80 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=37.5
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
..+..+...++.+.++..+.+++.|+.++..++.+++.|..+.+++.+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888888888888888888888888887777654
No 75
>PRK04325 hypothetical protein; Provisional
Probab=81.01 E-value=12 Score=30.78 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=25.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
++++|...|..+...+.=|+.|++.+...+..++.|+++++.|..++..+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444555555555555555555555555544443
No 76
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.98 E-value=13 Score=35.37 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=4.1
Q ss_pred CCCcccceee
Q 013627 88 HKDDEVKVFG 97 (439)
Q Consensus 88 ~~~e~~~~~~ 97 (439)
-++|-.+.|+
T Consensus 67 ~F~ELIRQVT 76 (189)
T PF10211_consen 67 CFDELIRQVT 76 (189)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 77
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=80.82 E-value=2.3 Score=39.36 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=49.4
Q ss_pred hhhhhhHHHHHHHHhccccCHHHHHHHH-HHHHHHhhhhhHHHHHHhhcCCCcccHHHHHH
Q 013627 341 TKGGFINSLIQKVLAAAYTNIEDLLEFV-DWLDKELSSLADERAVLKHFKWPEKKADAMRE 400 (439)
Q Consensus 341 ~~~~~I~~L~~~i~~~~~~d~~evv~Fv-~wld~eLs~L~DEr~VLk~F~wPekK~dalRe 400 (439)
++.+|++.|...++...-.|.+|+..|. .+.|...+.=-+|.++.+.+|.|..-+..+..
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3568999999999999999999999988 57888777656788999999999766655553
No 78
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.68 E-value=12 Score=30.71 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ 184 (439)
++++|...|..+...+.=|+.|++.+...+..++.|+++++.|..++..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444555555555555555555555555554444
No 79
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=80.63 E-value=8.6 Score=33.89 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+.+++.+|..+..++..++....+|-.||..|+-+-..++..+..+.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888888888888888888888888877775544
No 80
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.54 E-value=6.7 Score=38.72 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
|+++.+......+-|+.++.....+++..+.....|+++..++..+++++-.+-..|+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 66666666666677777777777777777777777777777777777776666555543
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=79.59 E-value=34 Score=31.70 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.|+.+|..+..++..+......+.+++..|.++++....+|..|.+
T Consensus 56 ~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555566666666666666655554
No 82
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.59 E-value=14 Score=37.89 Aligned_cols=47 Identities=28% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr 179 (439)
...++++|...+.+.++|..+|..+.+|...+.++..+|+.|...|.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444444444444433333
No 83
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=79.33 E-value=30 Score=31.53 Aligned_cols=66 Identities=11% Similarity=0.161 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~ 196 (439)
++-+.|++--+....-++.|.+.|+.+...+++..+..+..+.|..+++..+.....++.++....
T Consensus 47 ~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 667778888888888888999999999999999999999999999999999999998887666543
No 84
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.93 E-value=17 Score=33.49 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s 191 (439)
...+.++++|+..++.+.++++++..++..+....+.....+.+...++..+..+..++..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655555554444444444444444444444444433
No 85
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=78.85 E-value=5 Score=41.20 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+.|..++..|.+++++|+.+..+||+|+.||++=+
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666666666544
No 86
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.62 E-value=6.3 Score=38.94 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...|.+++...+.....|+.+...+..+...|.......+.+...|.+++..+...|..|.
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE 95 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444444444444444444555555555555554444
No 87
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.55 E-value=14 Score=31.33 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKA---EFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkk---ElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+++.+++......+.+..++..+.. +...+..+...+..+++.++.++..++.++
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333332 233333333333334444444444443333
No 88
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=78.28 E-value=7.5 Score=35.58 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
...++++..|..-|..++.|+.++..-..|+..|++..+++.+.|..|..+
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445888899999999999999999999999999999999999988888764
No 89
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=78.00 E-value=21 Score=36.60 Aligned_cols=62 Identities=31% Similarity=0.356 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..+.++.|...+..+.+++.+|..|+.+++........|+.++...+..|.++..=+..|.+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 34566777777777777777777777777777777777777777777888888877777775
No 90
>PRK00736 hypothetical protein; Provisional
Probab=77.94 E-value=16 Score=29.63 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ 184 (439)
+.+|+.+|...+..|.+| +..+...+..++.|++++..|..++..
T Consensus 7 i~~LE~klafqe~tie~L-------n~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEEL-------SDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433 333444444445555555555554443
No 91
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=77.89 E-value=12 Score=34.68 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=25.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQS---LNAELEKQNKKLVEDLV 183 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqe---rNeELEkEnkELr~ELa 183 (439)
.+....+..++.|+.+|....+.+..|+. -|++|+.++..|+.++.
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 44444455555666666655555555555 45555555555555555
No 92
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.74 E-value=23 Score=31.86 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+.+++..+...+..++.+++++++++.-++.+...+..++..+.
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555554333
No 93
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.73 E-value=11 Score=34.05 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLV-KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlI-keLqSELeaLkkElekLqerNeELEkEnkELr~ 180 (439)
.|-+||++-|+++..-. =-.+.+++.|+..+..|.++|..||+||.-|+.
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888776644 456778888888888888888888888777664
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.50 E-value=17 Score=37.15 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.+++.++..+..|-..+.+.+.+||+|..+|..++..++.+...+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554443
No 95
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=77.35 E-value=14 Score=33.25 Aligned_cols=52 Identities=29% Similarity=0.216 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ 184 (439)
|++|=+.+...+..+..|-.++..|++.+..+.+.|.-|+-||..|+..|..
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 6788888888888899999999999999999999999999999999888865
No 96
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.10 E-value=22 Score=31.79 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+++++|..|..+++..+.-+.+|-+|...|+..+..+.+|-.++.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~ 57 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRN 57 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555444443
No 97
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.06 E-value=17 Score=36.16 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=26.9
Q ss_pred CCCc--ccHHHHHHHHHHhhhHhhHHHHhcccc----CCCCC-cHHHHHHHHHh
Q 013627 389 KWPE--KKADAMREAAVEYRDLKQLENEISSYR----DDTNV-PFGAALKKMAS 435 (439)
Q Consensus 389 ~wPe--kK~dalReAa~~Y~~L~~l~~e~~~~~----d~p~~-p~~~aL~K~~~ 435 (439)
.||. +..|+|-..+..|.+++....-...|+ ..|.- -...|.+++..
T Consensus 209 ~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~ 262 (263)
T PRK10803 209 NYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA 262 (263)
T ss_pred HCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence 4564 478888888888887755554444332 23332 34445555543
No 98
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=76.96 E-value=22 Score=29.26 Aligned_cols=57 Identities=32% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 137 EEKLMLSENLVKDLQSEVFALK-------AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLk-------kElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+|.+....|.+|..+-+.|. .-+..|...+.+++.++..|..++..++..+.+|.
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444433 44444555555555555555555555555554444
No 99
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.50 E-value=22 Score=32.77 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
.++..+....+++..+......+.++..++...+...+..+.
T Consensus 120 ~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 120 ELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555555555555555533333334443
No 100
>PRK09039 hypothetical protein; Validated
Probab=76.40 E-value=16 Score=37.73 Aligned_cols=7 Identities=0% Similarity=0.230 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 013627 210 KDVQKLI 216 (439)
Q Consensus 210 KkIQkli 216 (439)
++|+.++
T Consensus 179 ~~L~~a~ 185 (343)
T PRK09039 179 RRLNVAL 185 (343)
T ss_pred HHHHHHH
Confidence 3333333
No 101
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.34 E-value=24 Score=32.09 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.|++|.++|+-....+++...=...+++++..++.-......++..++.-+..++.+|.++.
T Consensus 61 ~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 61 STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777666666666555666667777777777777777777777777777776554
No 102
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=76.32 E-value=33 Score=28.25 Aligned_cols=51 Identities=22% Similarity=0.213 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
++.+.+--.+|..|.+|-+.|......+..-++.|+.++..++.++..+..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~ 54 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK 54 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666666666666655553
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.22 E-value=87 Score=31.22 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
|+..+..-..-+..++.++++|+.|+.+|+|+++...-++..+.
T Consensus 45 le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 45 LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333344455555555555556666655555554444
No 104
>PRK00846 hypothetical protein; Provisional
Probab=76.14 E-value=21 Score=30.07 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=22.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
+++|+..|..+...+.=|+.|+..+...+..++.|+++++.|..+|...+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333444444444444455555555555555554444
No 105
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.94 E-value=44 Score=28.50 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=32.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
|+.-|.-|+.-=.-|.-|+.|++.+++.|..|..++..+++.-..+..+...|+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444555555556667777777777777777776665555555555554444
No 106
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.80 E-value=24 Score=35.28 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=8.6
Q ss_pred chhhHHhHHhhhhc
Q 013627 285 PSFAQLYHSLTKQV 298 (439)
Q Consensus 285 P~vveLY~sLk~K~ 298 (439)
|.+..+|.-+++..
T Consensus 174 ~ell~~yeri~~~~ 187 (239)
T COG1579 174 PELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHHhcC
Confidence 45666666666644
No 107
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=75.63 E-value=21 Score=31.74 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
+.++++++..+.+++..++....+|-.||..|+-+-+.++..+..+
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777777777777777777777777776666554
No 108
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.58 E-value=17 Score=29.37 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.-+.+|+.+|.-+..-++.|.+...+.++++..|+.++..+..++.++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566677777777666666666666666666666666666666665444
No 109
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.48 E-value=22 Score=33.97 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
....+|+.+++..+..+.+|+.+|..+........++...| .++.+|+.++..++.++..+.
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l-~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELL-EELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666655543222222222211 234445555555555554333
No 110
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=75.33 E-value=17 Score=36.83 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=34.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+++++.+-.|++|..+-..|+.|.+.|+..|+-|=.+|.+|..++.-+...+.+++
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 44555556666666666666666666666666666666666666666666555554
No 111
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=75.14 E-value=2.6 Score=46.45 Aligned_cols=8 Identities=50% Similarity=0.629 Sum_probs=3.9
Q ss_pred hhHHhHHh
Q 013627 287 FAQLYHSL 294 (439)
Q Consensus 287 vveLY~sL 294 (439)
-..|+.+|
T Consensus 306 ~~t~W~s~ 313 (817)
T KOG1925|consen 306 CATLWASL 313 (817)
T ss_pred cchhhhcc
Confidence 34455544
No 112
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=74.59 E-value=27 Score=33.61 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.+++++++...+.+...+++++..|...+..++.+...+..
T Consensus 112 ~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~ 152 (190)
T PF05266_consen 112 RKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKE 152 (190)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444444444444444444444444333
No 113
>PRK03918 chromosome segregation protein; Provisional
Probab=74.47 E-value=27 Score=39.36 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013627 181 DLVAAEA 187 (439)
Q Consensus 181 ELa~aea 187 (439)
++..++.
T Consensus 681 ~~~~l~~ 687 (880)
T PRK03918 681 ELEELEK 687 (880)
T ss_pred HHHHHHH
Confidence 3333333
No 114
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.45 E-value=46 Score=32.53 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
+.+..+|+.-+..+.++...+..++..+|+|++-|..++..+..+-..+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344444444444444444455555555555555555555544444333
No 115
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=74.36 E-value=19 Score=36.50 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
-...|++.++.....+.+.|+.+-+.|+...+.|..+|.+|..+...++++|..++.|+
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 34567777777777788888999999999999999999999999999999998888877
No 116
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.34 E-value=57 Score=29.35 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+....|..++..+..++..+...+..|+.++..++.++..++.+...+.
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555555555555555555444444
No 117
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=73.65 E-value=18 Score=37.69 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=55.5
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhc
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK--QNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk--EnkELr~ELa~aeaQI~sL~ 193 (439)
.+++.+..--|+.+++..+..+.+++.+|+.+++.+.=.++.|..||. .-..+..++...+..|..|.
T Consensus 170 ~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD~~y~ksRR~i~Nl~ 239 (323)
T PF08537_consen 170 PSSNSDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANIDSEYVKSRRDIKNLQ 239 (323)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHhhhhccccc
Confidence 455556666788999999999999999999999999999999999998 55667777888888887775
No 118
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=73.03 E-value=5.7 Score=32.02 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSE----VFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSE----LeaLkkElekLqerNeELE 172 (439)
|+.++.-.++.|.+|+.+ |.+|..|++.|+.+|.+|.
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 356777788888888865 4455566666655555543
No 119
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=72.45 E-value=10 Score=29.81 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkEL 178 (439)
+++.++..+++++..+++.|++|+.++..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555544444
No 120
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.39 E-value=19 Score=41.52 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=53.6
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
+..+.....+|+++|+..+..+..|+..|.....+++.++.+..++|..+.+|+.+|..++.
T Consensus 584 dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 584 DEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888899999999999999999999999999999999988888888888888876554
No 121
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.97 E-value=76 Score=28.61 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQ 151 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLq 151 (439)
+...|+-.|-..+.++..|+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQ 36 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 122
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.85 E-value=19 Score=38.27 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=5.3
Q ss_pred HHHHHHHHHhHHHH
Q 013627 134 KEFEEKLMLSENLV 147 (439)
Q Consensus 134 ~eLqEkLe~sEnlI 147 (439)
+.|+.++...+..+
T Consensus 309 ~~l~~~l~~l~~~i 322 (562)
T PHA02562 309 KELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 123
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.80 E-value=21 Score=42.29 Aligned_cols=64 Identities=17% Similarity=0.293 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+.-++|++.|+..++.|.+--++++++..++.+++........++..|..++.....+...+..
T Consensus 678 ~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~ 741 (1200)
T KOG0964|consen 678 SELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQE 741 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5567999999999999999999999999999999999999999999999999999998876663
No 124
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=71.78 E-value=31 Score=34.56 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
...|+-.++..+..+..|+.+|..+.++.+.++.....|..
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~ 131 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333
No 125
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.70 E-value=69 Score=31.18 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=9.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALK 158 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLk 158 (439)
.+++++..++-|.+|+.+|..+.
T Consensus 132 aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 132 AEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhHHHHHHHHHHHH
Confidence 33444444444444444444333
No 126
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.68 E-value=36 Score=32.50 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL-EKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeEL-EkEnkELr~ELa~aeaQI~ 190 (439)
.++++++...+..+.+|+.++..+....+.+...++++ +.+.+....++..++.+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443332 2234444444444444433
No 127
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=71.61 E-value=29 Score=31.67 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=48.9
Q ss_pred ccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 123 KIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFV-----KAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 123 ~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkEle-----kLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+|-+.......++|++.+...+.++++|+-+...+..|.. ....-...++.|..++..+...+..|+..+.
T Consensus 12 ivTe~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 12 IVTEKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp E--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555677888888888889999999988888888875 3444445566677777777777666665443
No 128
>PRK04406 hypothetical protein; Provisional
Probab=71.53 E-value=34 Score=28.39 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.-+.+|+.+|.-...-++.|-+...+.++++..|+.+|..+..++
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444444444444444444444444444443333
No 129
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=71.50 E-value=2.7e+02 Score=35.56 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=69.0
Q ss_pred hhhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHhcc---ccCHHHHHHHHHHHHHHhhhhhHHHHHHhhc------
Q 013627 318 HSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAA---YTNIEDLLEFVDWLDKELSSLADERAVLKHF------ 388 (439)
Q Consensus 318 ~~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~~~---~~d~~evv~Fv~wld~eLs~L~DEr~VLk~F------ 388 (439)
..+..++++.+-+..+++++-+...-..+..++.+...|. -.+|+.+.+|+.-++..|+.|-++-..|.--
T Consensus 914 ~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k 993 (1822)
T KOG4674|consen 914 ITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTK 993 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566777777777778888888888788888888777766 3677788888888888888888777766621
Q ss_pred CCCcccHHHHHHHHHHhhhHhhHHHHhc
Q 013627 389 KWPEKKADAMREAAVEYRDLKQLENEIS 416 (439)
Q Consensus 389 ~wPekK~dalReAa~~Y~~L~~l~~e~~ 416 (439)
|-=.+.+|+.++-+.+-.+++.+...++
T Consensus 994 ~~e~~~~~~~~e~~sl~ne~~~~~~~~s 1021 (1822)
T KOG4674|consen 994 GKEDKLLDLSREISSLQNELKSLLKAAS 1021 (1822)
T ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333456666666666666655544433
No 130
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=71.38 E-value=23 Score=39.88 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 141 e~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
....+.+..++..++.|..|+..|+..+.+|++++..|+.+|+.+...+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555444
No 131
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=71.31 E-value=26 Score=28.92 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
++|++....|+..+...+.+|..|..++..|..+|..+..++
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555554
No 132
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=71.12 E-value=54 Score=33.94 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
..+.++.+.|...++.|.+++.++..++.++..+.
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888888888888887776543
No 133
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=71.08 E-value=7.2 Score=31.43 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
.+++-|++.+..|+++|.+||.||.-|++.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666777777777777766654
No 134
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=71.03 E-value=33 Score=33.56 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
.+++++...+|.....|+..|++-|..|+.+|++|+.-.
T Consensus 40 g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 40 GRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888888888888888877643
No 135
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.03 E-value=24 Score=38.54 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=38.3
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKI 189 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk---EnkELr~ELa~aeaQI 189 (439)
+.||....+++++|.....++..+...++.+......++.+.+.++. ++.+|+.++..++.++
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l 362 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEEL 362 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 66788888899999888887776655555555555555555444432 3444444444444443
No 136
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.98 E-value=43 Score=31.26 Aligned_cols=51 Identities=27% Similarity=0.446 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALK-AEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLk-kElekLqerNeELEkEnkELr~EL 182 (439)
.|.+++.....-+..+.+|++++..+. .++..++..++.|+.++..|+++|
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666777777776544 556666666666666655555544
No 137
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.67 E-value=48 Score=29.89 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA---QSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekL---qerNeELEkEnkELr~ELa~ae 186 (439)
..+.-|++++.-.+...+.+..+|..+..+++.+ ......|+.++.+|+.++..+-
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444333 2233334445555555554443
No 138
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.50 E-value=26 Score=36.13 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..|.=+++-|+.++..+++.+.++.+++.+...++.+.+..+..|..
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777766666666666666655554
No 139
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=70.43 E-value=54 Score=33.95 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=51.1
Q ss_pred eeecCcc-chhcccCccccccccCCCCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 97 GRSLNRP-VVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (439)
Q Consensus 97 ~~s~~R~-~v~qf~~~r~~~~~~~~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEn 175 (439)
+.+.+-| ++++.+++..++ . +....+-++..-.+-+..+.-+-+-+++.-|++.|..+|++|..+.
T Consensus 205 ~~s~p~ps~ie~s~~~~~~~------------~-~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 205 VSSDPQPSQIEKSAHPYKTP------------E-KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred CCCCCCcccccccCCCCCCc------------h-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 566666655222 1 2223333333345777777777777788888888888888777777
Q ss_pred HHHHHHHHHHHHHHh
Q 013627 176 KKLVEDLVAAEAKIA 190 (439)
Q Consensus 176 kELr~ELa~aeaQI~ 190 (439)
.+|+.+++.++.-|.
T Consensus 272 ~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 272 SELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776553
No 140
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.97 E-value=35 Score=40.63 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ--------SLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq--------erNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+.+++++.-..++.|+.++..+..+.+.+..+. .+..+.+.++..|..++..++.++.+|..
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444444433333 23333444555666666666666655554
No 141
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.97 E-value=33 Score=36.26 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=52.7
Q ss_pred cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hchhh
Q 013627 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS-------LSSRE 196 (439)
Q Consensus 124 ~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s-------L~s~~ 196 (439)
|-..+++++....+|+++....++..|+.--+.+++-+.++....+.||.|...|+..++-+...+.+ +..-+
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~ 290 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALD 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCC
Confidence 33445567777777777776666666665555555555555555555566555555555555555432 33222
Q ss_pred hhhhhhccCChhhHHHHHHHHh
Q 013627 197 QREAVGEYQSPKFKDVQKLIAN 218 (439)
Q Consensus 197 ~~~~~~E~qs~~~KkIQklia~ 218 (439)
.+ .+++--.++-|.|=+..|+
T Consensus 291 ~D-~~~~~~~~l~kq~l~~~A~ 311 (365)
T KOG2391|consen 291 ID-EAIECTAPLYKQILECYAL 311 (365)
T ss_pred ch-hhhhccchHHHHHHHhhhh
Confidence 22 3455556666666665544
No 142
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.86 E-value=24 Score=34.96 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
.+++|+..++....++.+.+.+..|...|-++.+.+..|
T Consensus 170 ~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~ 208 (216)
T KOG1962|consen 170 KQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=69.47 E-value=31 Score=37.24 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=21.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
+.|+..+..|..++.+|....++..+|+....+++.++..++.+|.....
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444433333
No 144
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=69.44 E-value=49 Score=29.02 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
+|+.+|+=..+|-.-+.....+|+.+|+.|..+|.+.+....
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444444444455555555555555555555443
No 145
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.36 E-value=57 Score=31.47 Aligned_cols=23 Identities=13% Similarity=-0.159 Sum_probs=13.6
Q ss_pred CCCcccHHHHHHHHHHhhhHhhH
Q 013627 389 KWPEKKADAMREAAVEYRDLKQL 411 (439)
Q Consensus 389 ~wPekK~dalReAa~~Y~~L~~l 411 (439)
|++-..+|.+..-.-+|.-|..+
T Consensus 276 ~~~~~~l~~~~~l~nl~~~l~~l 298 (302)
T PF10186_consen 276 GIDVPLLDPRDTLGNLLNLLWSL 298 (302)
T ss_pred CCCCCcCCchhhHHHHHHHHhhh
Confidence 55555666666666666655554
No 146
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=69.36 E-value=64 Score=27.18 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLM---LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 130 ~~~k~eLqEkLe---~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+.|+.++..-.. .......+++.++.+-..|+..+++..-+||.....+++++
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665544333 33445568888888888888888888888988777777666
No 147
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=69.31 E-value=51 Score=35.51 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEk 173 (439)
+-..|+..|+....|+..|+.+..++|+
T Consensus 286 lar~Lr~~I~~VarENs~LqrQKle~e~ 313 (442)
T PF06637_consen 286 LARSLRAGIERVARENSDLQRQKLEAEQ 313 (442)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 148
>PRK10869 recombination and repair protein; Provisional
Probab=69.29 E-value=25 Score=38.60 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=38.1
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKI 189 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk---EnkELr~ELa~aeaQI 189 (439)
+.||..-.+++++|..-.+++..+-..++.+....+.++++.+.|+. ...+|+.++..++.++
T Consensus 292 ~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l 357 (553)
T PRK10869 292 DLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQA 357 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 67788889999999988888887665555554444444444444332 3444444444444443
No 149
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=69.21 E-value=50 Score=27.31 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~ 195 (439)
+.+-+++..+.......+..|+.....-..++.-|..++..+-.|+..|...
T Consensus 13 e~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 13 EELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666677777777766777777777777777777666653
No 150
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.15 E-value=47 Score=29.63 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.+..+++....++.++..|+.++..++..+
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444
No 151
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=69.14 E-value=17 Score=31.00 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeEL 171 (439)
+..+..|.++++..+..++.++.++..+.+++..++....++
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666655555544
No 152
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.04 E-value=43 Score=34.51 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELE 172 (439)
++..|......|+.|+..+++..++++
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333444445555555555555555543
No 153
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=69.01 E-value=23 Score=33.63 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 157 LkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+..|+..++..+.+|+.+|.+|+.++..++.++
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 154
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.76 E-value=63 Score=31.48 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQ 151 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLq 151 (439)
+...+|++.|....+.++.|+
T Consensus 141 ~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 141 SKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 344555666655555555444
No 155
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=68.45 E-value=26 Score=28.03 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALK 158 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLk 158 (439)
....+++..|++.++++++++-++..+-
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556777888888888888887777664
No 156
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=68.24 E-value=36 Score=38.99 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~ 196 (439)
=..+..+|...+.+++.++.++...+.|++.+...+.+|..++..++.+...++..|..++.+.
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE 92 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFRE 92 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888888777777777766666666666666666555443
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.02 E-value=68 Score=33.46 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=8.5
Q ss_pred hhHHHHHHHHhh
Q 013627 208 KFKDVQKLIANK 219 (439)
Q Consensus 208 ~~KkIQklia~~ 219 (439)
+||.+-+|.+.|
T Consensus 183 L~Kqm~~l~~eK 194 (310)
T PF09755_consen 183 LWKQMDKLEAEK 194 (310)
T ss_pred HHHHHHHHHHHH
Confidence 778777776663
No 158
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.75 E-value=47 Score=31.98 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 151 qSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+.+|..|.-|.+.+.++...++.|..+|...+
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 159
>PRK02119 hypothetical protein; Provisional
Probab=67.70 E-value=44 Score=27.52 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+.-+.+|+.++.-...-++.|-+...+.++++..|+.+|..+..+
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554444444444444444444444444444444333
No 160
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=67.47 E-value=31 Score=29.99 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=40.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKA--QSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekL--qerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+.++.....+......+..+..+++.+ .+....|+-++.++++++..+++++..+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555555566677777777777776 66677777788888888888888776554
No 161
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.08 E-value=35 Score=40.57 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhh---H
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF---K 210 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~---K 210 (439)
.+|...+.......+.|+.+++.+..++...-++..+|+..+.++++++..+.+.+++++. ..++...++--+| +
T Consensus 400 ~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~--~~del~~~Rk~lWREE~ 477 (1200)
T KOG0964|consen 400 EKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKR--ELDELQDKRKELWREEK 477 (1200)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3345556666666677888888888888888888888888888888888888888888774 3334455555566 6
Q ss_pred HHHHHHHhh
Q 013627 211 DVQKLIANK 219 (439)
Q Consensus 211 kIQklia~~ 219 (439)
+++-+|+..
T Consensus 478 ~l~~~i~~~ 486 (1200)
T KOG0964|consen 478 KLRSLIANL 486 (1200)
T ss_pred HHHHHHHHH
Confidence 777777764
No 162
>PRK00295 hypothetical protein; Provisional
Probab=66.72 E-value=45 Score=27.06 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
-|.+|+.++.-...-++.|-+...+.++++..|+.++..+..++.++.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777666666666666666666666666666666654443
No 163
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=66.70 E-value=62 Score=28.84 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK--------------QNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk--------------EnkELr~ELa~aeaQI~sL~s 194 (439)
+.+..|+.++......+.++..++..++.++........+.+. ++..|+.++..++.++..|+.
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777665555555432 355566666666666655554
No 164
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=66.50 E-value=43 Score=31.05 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa 183 (439)
++..++++|++-.-..|+.++..++++.+|...++++...++..+..|++-|.
T Consensus 33 ~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 33 SIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666777777777777766666666666665555555543
No 165
>PRK11020 hypothetical protein; Provisional
Probab=66.22 E-value=18 Score=32.80 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhcc
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEY 204 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~ 204 (439)
+|+.|-..|+.++-.+.....+.+. .-+.++..+++.+..+|.+|+.....+-+.|.
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~--~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~ 62 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDA--EKYAQFEKEKATLEAEIARLKEVQSQKLSKEA 62 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333322211 13555666666666666666654444433333
No 166
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=66.12 E-value=5.1 Score=47.96 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=4.7
Q ss_pred ccCHHHHHHHH
Q 013627 358 YTNIEDLLEFV 368 (439)
Q Consensus 358 ~~d~~evv~Fv 368 (439)
-.||..+..-+
T Consensus 96 ~sdm~s~~~~~ 106 (2365)
T COG5178 96 CSDMPSVLTKV 106 (2365)
T ss_pred cccchhhhhhh
Confidence 34444444333
No 167
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=66.04 E-value=75 Score=26.22 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...++.+-|+..++.++.++.+++.+..|...+....+++-....+-.+.+...-..+..+.
T Consensus 20 ~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 20 VLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45678888999999999999999999999888877777776665555555555555554444
No 168
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.03 E-value=62 Score=27.28 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
|++-=.-|.-|+-|++.+++.|+.|..|..++++....++..-.+|+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455666666666666666666666666665555544444
No 169
>PF14282 FlxA: FlxA-like protein
Probab=66.03 E-value=47 Score=28.87 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
++.++.|+.++...+..++.|...-. + --+..+.+...|+.++..|+.+|..+..+...-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~-~--~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSD-L--DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777776666666666654200 0 112334566677777777777777777776433
No 170
>PRK04325 hypothetical protein; Provisional
Probab=65.86 E-value=47 Score=27.36 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.-|.+|+.++.-...-++.|-+...+.++++..|+.++..+..++
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655555555555555555555555555555544444
No 171
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=65.76 E-value=97 Score=27.57 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFV 162 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkEle 162 (439)
..++|+++.+..+..++.++.++..+..++.
T Consensus 37 ~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~ 67 (158)
T PF03938_consen 37 AQAKLQEKFKALQKELQAKQKELQKLQQKLQ 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 172
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=65.64 E-value=22 Score=28.27 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (439)
Q Consensus 141 e~sEnlIkeLqSELeaLkkElekLqerNeELEkEn 175 (439)
.+.|+.+..+.+.+..+++|++.+.+..+.++.-+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554444444433
No 173
>PRK02793 phi X174 lysis protein; Provisional
Probab=65.53 E-value=50 Score=27.09 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
.+.-+.+|+.+|.-...-++.|-+...+.++++..|+.++..+..++.++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666655555555555555555555555555554333
No 174
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=65.43 E-value=57 Score=26.71 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 157 LkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
|+.|+..+.++...++.|...|.++...+...|
T Consensus 19 L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 19 LKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444443
No 175
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.42 E-value=46 Score=39.65 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALK 158 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLk 158 (439)
.+++..++|++.+..+..++.+|..++
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~ 468 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLT 468 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 176
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=65.36 E-value=28 Score=27.74 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+.+|++++..+...+..++.+|+++..++.++++.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555555555555555444444444
No 177
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=65.12 E-value=2.1 Score=44.02 Aligned_cols=8 Identities=25% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHhh
Q 013627 335 IKADIETK 342 (439)
Q Consensus 335 Ik~DVe~~ 342 (439)
|-.|-++|
T Consensus 282 V~~~~~TH 289 (312)
T PF01213_consen 282 VTKDMMTH 289 (312)
T ss_dssp --------
T ss_pred cCcchhcc
Confidence 44444443
No 178
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=65.04 E-value=58 Score=31.60 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
+|..|..+-..+-..|-+++..+.+|++++..++.+..
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555555554443
No 179
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=64.99 E-value=1.1e+02 Score=28.51 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH-HHHHHHHHhhhchhhhhhhhhcc
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVED-LVAAEAKIASLSSREQREAVGEY 204 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk----EnkELr~E-La~aeaQI~sL~s~~~~~~~~E~ 204 (439)
++..+.+.+.|+..++...+.+..+...+..+........++-. +-.....+ +..++.+...+...-...-..|+
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek 131 (167)
T PRK08475 52 KSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEV 131 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555555555554444322 22222222 24444444444433334444555
Q ss_pred CChhhHHHHHHHHhhhhc
Q 013627 205 QSPKFKDVQKLIANKLEH 222 (439)
Q Consensus 205 qs~~~KkIQklia~~le~ 222 (439)
+.....-.|+++.+.++.
T Consensus 132 ~~a~~elk~eii~~~~~~ 149 (167)
T PRK08475 132 RKMEREVVEEVLNELFES 149 (167)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555556666677776665
No 180
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.99 E-value=1.5e+02 Score=29.21 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=27.0
Q ss_pred hhhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 013627 318 HSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLA 355 (439)
Q Consensus 318 ~~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~ 355 (439)
...|+.||.+|. |...+..++.-...-..|-.+|..
T Consensus 132 a~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~ 167 (264)
T PF06008_consen 132 AQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQK 167 (264)
T ss_pred HHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999996 777777777766666666666665
No 181
>PHA01750 hypothetical protein
Probab=64.67 E-value=38 Score=28.24 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkELr~ELa 183 (439)
.+++|+.|..|++....+.+.|++++++++..++
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4577888888888888888888888888877664
No 182
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.42 E-value=20 Score=28.14 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+..++.++..++.++++++.++.+|+.++..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444
No 183
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.38 E-value=37 Score=38.72 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
++++-.+||.|++.|+.+|...+.++..+..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777665554
No 184
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=64.19 E-value=74 Score=35.96 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELE 172 (439)
..++.+.+...+-++.|+.+|..++.++...+...+...
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr 294 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYR 294 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777766666555555443
No 185
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.98 E-value=34 Score=35.30 Aligned_cols=45 Identities=31% Similarity=0.291 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~ 197 (439)
+...|+.|+..+.+..+.|++-...|..+|...+.||.-|.+..+
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~ 105 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLN 105 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 334566677778888888888888888888888888877776544
No 186
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=63.97 E-value=52 Score=35.90 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=43.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL-------EKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFK 210 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeEL-------EkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~K 210 (439)
..|+.....+..|+..+..|+.|+...+.....| ...+..|+.+|...+.++..+.... ....+-.+.++.
T Consensus 295 ~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e--~~~k~~~~~l~~ 372 (522)
T PF05701_consen 295 KELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE--EKAKEAMSELPK 372 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh--cchhhhHHHHHH
Confidence 3444444455555555555555555544444444 4467777777777777776555422 223344455777
Q ss_pred HHHHHHHh
Q 013627 211 DVQKLIAN 218 (439)
Q Consensus 211 kIQklia~ 218 (439)
.+|++-..
T Consensus 373 ~Lqql~~E 380 (522)
T PF05701_consen 373 ALQQLSSE 380 (522)
T ss_pred HHHHHHHH
Confidence 77775444
No 187
>PRK00736 hypothetical protein; Provisional
Probab=63.89 E-value=46 Score=26.99 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.-|.+|+.+|.-...-++.|-+.....++++..|+.+|..+..++.++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4477888888888777777777777777777777777777777765544
No 188
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=63.77 E-value=28 Score=30.08 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
++++..|..+++..+..++.|+.++..+.+++..++....+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777776666665555443
No 189
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=63.59 E-value=51 Score=32.30 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.+..++|+..|+....-+..|..+++..+.-.+...+++++|..+..-|+.++..++.++..+.-
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888888888888888888888888878888888888888777777777777777765553
No 190
>PRK09343 prefoldin subunit beta; Provisional
Probab=63.56 E-value=28 Score=30.93 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqer 167 (439)
+..+++|.++++..+..|+.|+.+...+.+.+..++..
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444444333
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.00 E-value=82 Score=31.28 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAE 160 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkE 160 (439)
+++|..++.+.+.+..++..++..+..|
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~e 30 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENE 30 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666655543
No 192
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.94 E-value=35 Score=40.30 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFA 156 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELea 156 (439)
..+|..|..+++..|..|.+|+.++++
T Consensus 416 ~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 416 RRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888888774
No 193
>PHA03211 serine/threonine kinase US3; Provisional
Probab=62.87 E-value=5.6 Score=42.17 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=5.0
Q ss_pred cHHHHHHHHHHh
Q 013627 394 KADAMREAAVEY 405 (439)
Q Consensus 394 K~dalReAa~~Y 405 (439)
+.|-+--...+|
T Consensus 342 ~sDvwSlGviL~ 353 (461)
T PHA03211 342 SVDIWSAGLVIF 353 (461)
T ss_pred hHHHHHHHHHHH
Confidence 344444444444
No 194
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.64 E-value=60 Score=38.00 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=16.5
Q ss_pred HhhhhhHHHH----HHhhcCCCcccHHHHHHHHH
Q 013627 374 ELSSLADERA----VLKHFKWPEKKADAMREAAV 403 (439)
Q Consensus 374 eLs~L~DEr~----VLk~F~wPekK~dalReAa~ 403 (439)
+...+.+|-. .++.| +.|..+|++|-.
T Consensus 905 ki~s~kqeqee~~v~~~~~---~~~i~alk~~l~ 935 (970)
T KOG0946|consen 905 KIVSNKQEQEELLVLLADQ---KEKIQALKEALE 935 (970)
T ss_pred cccchhhhHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 4445555544 23444 788889888753
No 195
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=62.32 E-value=20 Score=31.29 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
....++.++..++++|++|+.+|..|+.++..++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666666666666655554
No 196
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=62.01 E-value=59 Score=36.44 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhcc
Q 013627 128 LMDKKKKEFEEKLMLSENLVK---DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEY 204 (439)
Q Consensus 128 ~d~~~k~eLqEkLe~sEnlIk---eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~ 204 (439)
.|+++.+.-|-.+.--|.-++ .-+.=+.+|...+.++...|++|.+||.-|+.+|..+..+-..++- ...
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv-------psp 347 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV-------PSP 347 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc-------CCC
Confidence 456888877744433333332 1223345677778888888888888888888888777764433322 112
Q ss_pred CChhhHHHHHHHHhh
Q 013627 205 QSPKFKDVQKLIANK 219 (439)
Q Consensus 205 qs~~~KkIQklia~~ 219 (439)
--.+.|+|.+.++.+
T Consensus 348 ~~~~qKk~Rkvvaim 362 (655)
T KOG4343|consen 348 KGRNQKKKRKVVAIM 362 (655)
T ss_pred cccccccchhhhhHH
Confidence 223567888888875
No 197
>PHA03011 hypothetical protein; Provisional
Probab=61.98 E-value=66 Score=28.87 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
-++.+-+.|++.--..++|-.+-.-+..|...+..-..+-..++.-|+.|+++++.+++.+.
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~s 119 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANLS 119 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhccC
Confidence 35566666666555566666666666677666666666666789999999999999987654
No 198
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.97 E-value=3.6e+02 Score=32.70 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=41.5
Q ss_pred hhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHhccccCHHHHHHHHHHHHHHhhhh
Q 013627 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSL 378 (439)
Q Consensus 319 ~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~~~~~d~~evv~Fv~wld~eLs~L 378 (439)
-.-++|++| +..++|.++...-..|..+.+....--..+.+++..-++||..+.+.|
T Consensus 357 ~~~~~~~~n---~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~ 413 (1074)
T KOG0250|consen 357 KEEIREIEN---SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKL 413 (1074)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344566666 558889999888888888888886666777777777777766654433
No 199
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.83 E-value=50 Score=29.57 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.++..+..+..++..+-+.|-.++.++.+++.++...-..+
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~ 71 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEEL 71 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333444433333333
No 200
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=61.38 E-value=54 Score=35.80 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHhh
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANK 219 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~~ 219 (439)
.++..+..+-..-+..+++|.++..+|...+.+-+.-| +| .+||+|++|-++|
T Consensus 165 ~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEal------vN---------~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 165 NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEAL------VN---------SLWKRMDKLEQEK 217 (552)
T ss_pred HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHH------HH---------HHHHHHHHHHHHH
Confidence 44444433322223333667777777776666555433 13 3899999987764
No 201
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=61.17 E-value=65 Score=36.77 Aligned_cols=24 Identities=4% Similarity=-0.122 Sum_probs=10.5
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHH
Q 013627 327 NRSAHLLAIKADIETKGGFINSLI 350 (439)
Q Consensus 327 nRSa~llaIk~DVe~~~~~I~~L~ 350 (439)
.|-.|+..=..|++....-+...|
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i 1016 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAK 1016 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444444333333333
No 202
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=61.16 E-value=91 Score=32.46 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+..|.+.|..........+.+|..|..++..++.+...+=.|+.+|.+.|...
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444444555555555443
No 203
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.13 E-value=40 Score=37.43 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=24.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 134 KEFEEKLMLSENLVKDLQSEVF---------ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELe---------aLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.++..++...+.++.++..+|. .+.+++..+.....+++.++..+.+++..++.++..+.
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 462 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALR 462 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444332 23333333333334444444444444444444443333
No 204
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=61.12 E-value=26 Score=30.15 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~ 196 (439)
+.+++++|+.|..||..|+.+.+.++.|+...+.+.
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrq 60 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQ 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677788888888888888888886555433
No 205
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.00 E-value=57 Score=26.69 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.+..+..|+..++.+..++......+..|-.|....-.+|..+...+..|+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~ 54 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKE 54 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888888888777777777777777776665
No 206
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=61.00 E-value=62 Score=27.02 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 168 NAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 168 NeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
-..|+.++..|-.++.....||..|.
T Consensus 52 R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 52 RRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466677788888888888886654
No 207
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.80 E-value=47 Score=37.92 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=38.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFA-------LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELea-------LkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
++|+-.|..+...=++|+++|.. ++.++.+++..|++|+..+..|....++-+..+.+|.-
T Consensus 428 kkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk 495 (697)
T PF09726_consen 428 KKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK 495 (697)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554445578888653 44667777777777777777776666666655555543
No 208
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.48 E-value=82 Score=25.24 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=7.1
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 013627 142 LSENLVKDLQSEVFALKAE 160 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkE 160 (439)
...+.++.|.+++.+|..+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 209
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=60.44 E-value=52 Score=36.90 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDL 150 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeL 150 (439)
..+.+|..++...+..+.+|
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l 307 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADL 307 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777766654433
No 210
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=60.27 E-value=1.4e+02 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 162 VKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 162 ekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..+.+++.+++..+.+++..|..+++++.++.+
T Consensus 17 ~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpg 49 (148)
T PF10152_consen 17 SVCEEKLSDMEQRLQRLEATLNILEAKLSSIPG 49 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 346677888888888888889999998877764
No 211
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.24 E-value=46 Score=35.38 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013627 171 LEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 171 LEkEnkELr~ELa~aeaQI~ 190 (439)
|..+.++|+.++..++.++.
T Consensus 71 l~~~~~~l~~~~~~~~~~~~ 90 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELD 90 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554443
No 212
>PF15195 TMEM210: TMEM210 family
Probab=60.01 E-value=6.2 Score=34.92 Aligned_cols=11 Identities=64% Similarity=1.494 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 013627 260 PSMPAPLPPPP 270 (439)
Q Consensus 260 ~~~ppppppPp 270 (439)
|++|||||||+
T Consensus 104 p~~pppppP~~ 114 (116)
T PF15195_consen 104 PEEPPPPPPPP 114 (116)
T ss_pred CCCCCcCcCCC
Confidence 34444444433
No 213
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.79 E-value=51 Score=38.55 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=36.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+.++...+.+..|+..+..+.-+++.+++.+.+|+.|+.+|+.+|....++..+++
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~ 705 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLK 705 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666777776666666666666555544444
No 214
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=59.53 E-value=84 Score=33.98 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK-----AQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElek-----LqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.-+++|.+..+..-.-+.+||.-++.|++.+.. ...+.+.+.+++..+..+|..++.-|..++
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k 273 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK 273 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677888888887777888888888888876655 334444445555556666666655554444
No 215
>PRK11519 tyrosine kinase; Provisional
Probab=59.40 E-value=86 Score=35.39 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
.++.+.+.+++-+..|+.+|..++.+++..+...+.
T Consensus 257 ~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 257 NIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666665555444444
No 216
>PRK14161 heat shock protein GrpE; Provisional
Probab=59.18 E-value=70 Score=30.58 Aligned_cols=16 Identities=0% Similarity=0.065 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhhcccc
Q 013627 210 KDVQKLIANKLEHSIV 225 (439)
Q Consensus 210 KkIQklia~~le~s~~ 225 (439)
+-|++.+.+.|+.--.
T Consensus 105 ~mi~k~l~~vL~~~Gv 120 (178)
T PRK14161 105 QMTKDELDKVFHKHHI 120 (178)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4445555666765444
No 217
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=59.16 E-value=85 Score=25.15 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
.+.+|.+++..|..++.++....+-|..++...+++-.++..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444444444443
No 218
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=59.04 E-value=93 Score=30.23 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=47.5
Q ss_pred ccCccccccccCCCCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
Q 013627 108 FARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE------------LEKQN 175 (439)
Q Consensus 108 f~~~r~~~~~~~~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE------------LEkEn 175 (439)
||.++..++-..++..--+.+ ..-+-+|.+.++-.++-...|+.+++....+-..+-..+.. +|.+.
T Consensus 5 fgk~~~~~~~~~~~~~~~~~~-~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql 83 (191)
T PTZ00446 5 FGKKKNSSECSDNKKKNNDEI-YKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEI 83 (191)
T ss_pred cCCCCCCCcchhhhhccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 777775553121222222223 35567788888888888888988888766554432222221 23345
Q ss_pred HHHHHHHHHHHHHHhhhch
Q 013627 176 KKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 176 kELr~ELa~aeaQI~sL~s 194 (439)
..+.+++..++.++..+..
T Consensus 84 ~q~~~ql~nLEq~~~~iE~ 102 (191)
T PTZ00446 84 ENILNNRLTLEDNMINLEN 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544443
No 219
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=58.68 E-value=15 Score=34.88 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+++.+|-.+=+-...|+++| .|.+.|+..++.|..|..+|++|+
T Consensus 4 D~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555 334445555555555555555555
No 220
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=58.60 E-value=74 Score=30.68 Aligned_cols=6 Identities=17% Similarity=0.290 Sum_probs=2.1
Q ss_pred HHHHHH
Q 013627 153 EVFALK 158 (439)
Q Consensus 153 ELeaLk 158 (439)
+|..+.
T Consensus 126 kL~~~~ 131 (194)
T PF15619_consen 126 KLSQLE 131 (194)
T ss_pred HHHHHH
Confidence 333333
No 221
>PRK00846 hypothetical protein; Provisional
Probab=58.55 E-value=56 Score=27.54 Aligned_cols=51 Identities=8% Similarity=0.047 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+.-|.+|+.++.-...-++.|-+.....++++..|+.++..+..++.++.
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666555555566666666666666666554444
No 222
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.52 E-value=50 Score=30.80 Aligned_cols=67 Identities=7% Similarity=0.090 Sum_probs=35.0
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...+...+.++.=.+.-.....+|+.+|-+.+.|+..+...+.-=+..+..|.+|+..+..++.++.
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555566666666666555544333333456666666666666664433
No 223
>PRK12704 phosphodiesterase; Provisional
Probab=58.29 E-value=1.1e+02 Score=33.69 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=16.4
Q ss_pred hhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHH
Q 013627 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQK 352 (439)
Q Consensus 319 ~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~ 352 (439)
-.+||-++-|+.|-+.+-.++...+.+-..|+..
T Consensus 320 ~~ll~~l~~R~~~~qn~l~Hs~~Va~lA~~lA~~ 353 (520)
T PRK12704 320 IKLLGRLKYRTSYGQNVLQHSIEVAHLAGLMAAE 353 (520)
T ss_pred HHHHHHhhccCcCCCcHhHHHHHHHHHHHHHHHH
Confidence 4556666666666443333444444444444433
No 224
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=58.06 E-value=94 Score=37.10 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=18.0
Q ss_pred CCCcccHHHHHHHHHHhhhHhhHHHHhccccCCC
Q 013627 389 KWPEKKADAMREAAVEYRDLKQLENEISSYRDDT 422 (439)
Q Consensus 389 ~wPekK~dalReAa~~Y~~L~~l~~e~~~~~d~p 422 (439)
..|.++...|-.-+=+=..|-.|.==+.-|.-.|
T Consensus 1055 ~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~P 1088 (1163)
T COG1196 1055 RPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRP 1088 (1163)
T ss_pred ECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCC
Confidence 3466666655554444455544444455555555
No 225
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=57.93 E-value=66 Score=25.94 Aligned_cols=41 Identities=10% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+|..+..++..++++.+.||.-...++.++..++.++.++.
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444433344444444444444443
No 226
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=57.83 E-value=89 Score=29.65 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=6.2
Q ss_pred HHHHHHHHhHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDL 150 (439)
Q Consensus 135 eLqEkLe~sEnlIkeL 150 (439)
.|+.+++..+..+.+|
T Consensus 55 ~le~~~~~~~~~~~~~ 70 (221)
T PF04012_consen 55 RLERKLDEAEEEAEKW 70 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 227
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=57.79 E-value=63 Score=32.49 Aligned_cols=72 Identities=18% Similarity=0.042 Sum_probs=43.2
Q ss_pred ccCCCCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 117 VDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 117 ~~~~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.+..-..+.++.++..+.+..++=-++- +...+.-+....+.+.+..+|++||..|+.++.+++.++..|+.
T Consensus 179 ~K~~~~~~~~~~~~~~y~err~rNN~A~------~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 179 RKKSKLSSPVEKKDPEYKERRRRNNEAV------RKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred hhhccCCCchhcCCHHHHHHHHhhhHHH------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677777888877766533322 22222222233556667777777777777777777777766654
No 228
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.77 E-value=31 Score=35.38 Aligned_cols=67 Identities=22% Similarity=0.315 Sum_probs=46.6
Q ss_pred cccCcchHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 124 IEDGLMDKK--KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 124 ~~~~~d~~~--k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
|-..|.|.. ..++++.|...+......+.+|..+..++..++...++...+...|+.++...+..+.
T Consensus 212 v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 212 VNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344555533 3445667777777777777777777777777777777777777778877777776663
No 229
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.52 E-value=1.1e+02 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013627 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 156 aLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s 191 (439)
.|...++.+-....+|+.||..|++++..+.++=..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~ 39 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQ 39 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333
No 230
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=57.17 E-value=78 Score=30.16 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
....-|++.++.....+++|+..+..+-.++...+ +-+..+|+.++-.+|..++..|..+..
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYq--ll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQ--LLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555677777777777777777777766665543 223345888888888888888866554
No 231
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.01 E-value=79 Score=32.36 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.++....+|.....|++.+++...+.|++.++++.++...++.+..|.
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666677777777777777766666665554
No 232
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=56.85 E-value=80 Score=37.95 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
.....|+++|++.......++..+.+..+++..+.+...+++.++.+|+++|..++++....
T Consensus 149 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (1123)
T PRK11448 149 QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210 (1123)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777777788888888888888887788888888888888888877776543
No 233
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=56.84 E-value=51 Score=37.84 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 128 ~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
+.-+.+++|+++|..+++++..|-+.|...+..+...+......+..+.+|..+|.++..
T Consensus 262 l~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 262 LNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456889999999999999999999999988888888888888888888888888877776
No 234
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=56.77 E-value=87 Score=28.54 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 013627 174 QNKKLVEDLVAAEA 187 (439)
Q Consensus 174 EnkELr~ELa~aea 187 (439)
.+.+|+..+..+++
T Consensus 63 ~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 63 YLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334444433
No 235
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=56.69 E-value=41 Score=29.47 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhch
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ-------------------NKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkE-------------------nkELr~ELa~aeaQI~sL~s 194 (439)
.+|+..|+.++.+-.-|+.+|..+.+++..++...+.+..+ -..|+.+|..++.||..|+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~ 83 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSG 83 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhh
Confidence 47889999999999999988888888888888777776542 23467777777878877776
Q ss_pred hh
Q 013627 195 RE 196 (439)
Q Consensus 195 ~~ 196 (439)
..
T Consensus 84 kv 85 (96)
T PF11365_consen 84 KV 85 (96)
T ss_pred HH
Confidence 43
No 236
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=56.65 E-value=46 Score=37.64 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=10.1
Q ss_pred hcchhhHHHHHHHHHhh
Q 013627 326 QNRSAHLLAIKADIETK 342 (439)
Q Consensus 326 enRSa~llaIk~DVe~~ 342 (439)
++|--| .+++++|++-
T Consensus 513 qkREQY-rqVreHV~ke 528 (832)
T KOG2077|consen 513 QKREQY-RQVREHVQKE 528 (832)
T ss_pred HHHHHH-HHHHHHhhcc
Confidence 556666 6677777663
No 237
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.42 E-value=80 Score=32.62 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+|-++-..|.=++.-|+....+||..+..++.++
T Consensus 102 QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 102 QLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444
No 238
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.28 E-value=57 Score=30.52 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 169 AELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 169 eELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+.++.|+.+|+.+|..++.++..|+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666555555555543
No 239
>PRK10698 phage shock protein PspA; Provisional
Probab=56.22 E-value=1.2e+02 Score=29.70 Aligned_cols=20 Identities=15% Similarity=0.249 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSE 153 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSE 153 (439)
+.++.++...+..+.+|+.+
T Consensus 55 k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 55 KQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444433
No 240
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=56.14 E-value=1.6e+02 Score=30.50 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=5.0
Q ss_pred HHHHHHHHhHHHH
Q 013627 135 EFEEKLMLSENLV 147 (439)
Q Consensus 135 eLqEkLe~sEnlI 147 (439)
.|..+|...+...
T Consensus 258 ~l~~~l~~le~~l 270 (444)
T TIGR03017 258 NLKTDIARAESKL 270 (444)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 241
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=56.13 E-value=60 Score=26.18 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
...+.+++.+.+.+..+......++.+++.+..+|...+...
T Consensus 9 ~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 9 NRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555666666666666677777776666554
No 242
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=55.42 E-value=49 Score=29.05 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+.|..++..+.+++..+...+++|+..++++.+++..++.+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666666666666666655555555555555443
No 243
>PRK14127 cell division protein GpsB; Provisional
Probab=55.40 E-value=34 Score=30.45 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.6
Q ss_pred hhHHHHHH
Q 013627 208 KFKDVQKL 215 (439)
Q Consensus 208 ~~KkIQkl 215 (439)
+.|+|-+|
T Consensus 90 iLKRls~L 97 (109)
T PRK14127 90 ILKRLSNL 97 (109)
T ss_pred HHHHHHHH
Confidence 34554443
No 244
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.25 E-value=44 Score=37.38 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=11.8
Q ss_pred CCCCchhhHHhHHhhhhc
Q 013627 281 TQKTPSFAQLYHSLTKQV 298 (439)
Q Consensus 281 ~~rsP~vveLY~sLk~K~ 298 (439)
-.--|.++++..+.....
T Consensus 417 ~~V~~~l~el~~ei~~~~ 434 (581)
T KOG0995|consen 417 SYVKPLLKELLDEISEEL 434 (581)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 344567788887776654
No 245
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=55.08 E-value=90 Score=31.53 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhhch
Q 013627 175 NKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 175 nkELr~ELa~aeaQI~sL~s 194 (439)
...++.++..+++++.++..
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33444444555555544443
No 246
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=54.93 E-value=3.3e+02 Score=30.06 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=17.5
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkk 159 (439)
-|+..+.-..+.--++..++++..|++.|...++
T Consensus 241 ~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk 274 (552)
T KOG2129|consen 241 PDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQK 274 (552)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555666666666655443
No 247
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.93 E-value=79 Score=33.58 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=10.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVK 163 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElek 163 (439)
++++..++++++++.++..+++.+..
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~ 359 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKK 359 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444333
No 248
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.43 E-value=72 Score=35.67 Aligned_cols=67 Identities=24% Similarity=0.300 Sum_probs=42.8
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhc
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE----------LEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE----------LEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.||..-.+++++|.....++..|...+..+-+...+++++.+. |+.+...++.++..+..+++..+
T Consensus 293 e~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R 369 (557)
T COG0497 293 EFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIR 369 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999887776555554444444444444 44455555555555555554433
No 249
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=54.26 E-value=1.4e+02 Score=28.86 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=9.2
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEV 154 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSEL 154 (439)
.++.+++..+..+.+|+.+.
T Consensus 56 ~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 56 ELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444454444433
No 250
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.20 E-value=80 Score=34.68 Aligned_cols=45 Identities=22% Similarity=0.221 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
..+-.+..+.+++..+..++.+...++.+|+.|....+.-..++.
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~ 420 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLK 420 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333344444444444444444444444444444444444444443
No 251
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=54.08 E-value=80 Score=30.92 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
....+++.+.|-.++..|+.|+..+....+.|.+..++|..+-..+..||.
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~ 140 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLC 140 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHH
Confidence 333344444444444444444444444444444455555555555555553
No 252
>PRK14160 heat shock protein GrpE; Provisional
Probab=53.98 E-value=87 Score=30.88 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQ 197 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~ 197 (439)
+..+++++..+.+.+..|+.++.+++.++.++.+.+..++-+..
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555666666666666666666665555443
No 253
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=53.76 E-value=1.1e+02 Score=39.01 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~ 196 (439)
.+..+|...++..+..-..+..++..+...++.+.+..++|+++|+.+..++..+..++..+..+.
T Consensus 1449 ~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v 1514 (1930)
T KOG0161|consen 1449 KKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRV 1514 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777888888888888888888888888888888888888886655433
No 254
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=53.72 E-value=44 Score=26.96 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.1
Q ss_pred HHHHHHhhhhc
Q 013627 212 VQKLIANKLEH 222 (439)
Q Consensus 212 IQklia~~le~ 222 (439)
|++++.++|-.
T Consensus 63 Ie~~Ar~~lgM 73 (85)
T TIGR02209 63 IEKIAKKQLGM 73 (85)
T ss_pred HHHHHHHhcCC
Confidence 45555444433
No 255
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=53.50 E-value=80 Score=32.19 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEk 173 (439)
|..+|+..+.|++..+.+...|+.
T Consensus 195 Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 195 LEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555443
No 256
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.49 E-value=96 Score=33.48 Aligned_cols=37 Identities=22% Similarity=0.124 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
++....+|+++|+..+..+..++.++..+...+.-+.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888877777665554433
No 257
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=53.26 E-value=1.4e+02 Score=26.48 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 128 ~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.....+..+...|...+-.+..++.-+.+-..|.+.+...+.+++.++..++.++..++.++...+
T Consensus 43 ~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 43 ESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888899999999999999988888888888888886544
No 258
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=53.26 E-value=73 Score=33.83 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkk 159 (439)
...++|.+.+...++.+.+++..|..+.+
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33466777777777777888877776654
No 259
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=53.20 E-value=1.5e+02 Score=32.67 Aligned_cols=34 Identities=6% Similarity=0.103 Sum_probs=17.3
Q ss_pred hHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHH
Q 013627 320 SIVGEIQNRSAHLLAIKADIETKGGFINSLIQKV 353 (439)
Q Consensus 320 ~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i 353 (439)
.+||-+.-|..|-..+-.+.-..+.+-..|+..+
T Consensus 315 ~~l~~l~~r~~~~~~~l~Hs~~VA~lA~~LA~~l 348 (514)
T TIGR03319 315 KLLGRLKFRTSYGQNVLQHSIEVAHLAGIMAAEL 348 (514)
T ss_pred HHHHHhhccccCCccHHHHHHHHHHHHHHHHHHh
Confidence 4466677777774333344444444444444443
No 260
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.14 E-value=1e+02 Score=29.77 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALK 158 (439)
Q Consensus 147 IkeLqSELeaLk 158 (439)
|.+|+.+|..|+
T Consensus 133 i~~Le~ki~el~ 144 (190)
T PF05266_consen 133 IKELEMKILELQ 144 (190)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 261
>PLN02678 seryl-tRNA synthetase
Probab=53.10 E-value=71 Score=34.60 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 013627 174 QNKKLVEDLVAAEAKI 189 (439)
Q Consensus 174 EnkELr~ELa~aeaQI 189 (439)
+.+.|..++..++.++
T Consensus 79 ~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 79 ETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 262
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=52.85 E-value=38 Score=32.23 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=21.5
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
++.....+.+|+.+|...|.+|.-|++=|.+.......|+
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLK 63 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELK 63 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555566666666666666665555555444433333
No 263
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=52.78 E-value=48 Score=26.75 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr 179 (439)
.+++.++..++.++..++..|++|+.|+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555555555444443
No 264
>PRK10780 periplasmic chaperone; Provisional
Probab=52.75 E-value=1.8e+02 Score=26.80 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=7.8
Q ss_pred ChhhHHHHHHHHh
Q 013627 206 SPKFKDVQKLIAN 218 (439)
Q Consensus 206 s~~~KkIQklia~ 218 (439)
.++.++|++.|..
T Consensus 119 ~~i~~ki~~ai~~ 131 (165)
T PRK10780 119 NKILTRIQTAVKS 131 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 3566777776543
No 265
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.57 E-value=98 Score=34.04 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=5.5
Q ss_pred hhhhHHHHH
Q 013627 317 AHSSIVGEI 325 (439)
Q Consensus 317 a~~~mIgEI 325 (439)
||..+||++
T Consensus 249 aMTALIGRV 257 (472)
T TIGR03752 249 AMTALIGRV 257 (472)
T ss_pred HHHHHhccc
Confidence 566666654
No 266
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=52.45 E-value=59 Score=28.88 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=34.0
Q ss_pred CCCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 120 NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 120 ~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
+..-||-++ +..++.|..+++..+..++.|+.++..++++++.+.....++..
T Consensus 84 ~g~~vE~~~-~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 84 AGYSAEKDL-DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred CCEEEEecH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555 45666777777777777777777777777766666666555544
No 267
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=52.17 E-value=1.2e+02 Score=33.51 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSEN-------LVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 132 ~k~eLqEkLe~sEn-------lIkeLqSELeaLkkElekLqerNeE 170 (439)
.++.|+++|+-.-+ +....+..+++++.|+.-|...+-+
T Consensus 480 ~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq 525 (583)
T KOG3809|consen 480 KMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQ 525 (583)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34555555544322 2234456677777777777665544
No 268
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.16 E-value=82 Score=33.47 Aligned_cols=8 Identities=25% Similarity=0.796 Sum_probs=3.2
Q ss_pred HHhhcCCC
Q 013627 384 VLKHFKWP 391 (439)
Q Consensus 384 VLk~F~wP 391 (439)
+++.||.|
T Consensus 310 i~~~Lglp 317 (418)
T TIGR00414 310 ILQELELP 317 (418)
T ss_pred HHHHcCCc
Confidence 33444443
No 269
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=52.16 E-value=33 Score=37.92 Aligned_cols=8 Identities=38% Similarity=0.463 Sum_probs=3.7
Q ss_pred chhhHHHH
Q 013627 328 RSAHLLAI 335 (439)
Q Consensus 328 RSa~llaI 335 (439)
|.+-+-+|
T Consensus 495 R~~LmaqI 502 (569)
T KOG3671|consen 495 RDALMAQI 502 (569)
T ss_pred HHHHHHHH
Confidence 44444444
No 270
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=52.10 E-value=59 Score=32.00 Aligned_cols=79 Identities=30% Similarity=0.356 Sum_probs=62.5
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCcccHHHHHHHHHHhhhHhhHHHHhccccCCCCC
Q 013627 345 FINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNV 424 (439)
Q Consensus 345 ~I~~L~~~i~~~~~~d~~evv~Fv~wld~eLs~L~DEr~VLk~F~wPekK~dalReAa~~Y~~L~~l~~e~~~~~d~p~~ 424 (439)
-||+++..+-.-...+++++..-+..+|..|=. .+..+|+.++ +-+....|.-++.|..|...|...-.-
T Consensus 105 eiNE~K~~ly~~~~~~~e~~~~~~~~ies~l~~-----~~~~~f~~~~-----w~~l~~~~l~~~rL~~E~~~~~~~~~s 174 (212)
T PF07307_consen 105 EINELKMSLYQKKKETAEEYLESVVTIESALFQ-----SFAEHFGKPE-----WKELIEEFLLLKRLLKERELYQEGGNS 174 (212)
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHH-----HHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 378888888887788888888888877775532 2456675543 777888888999999999999888878
Q ss_pred cHHHHHHHH
Q 013627 425 PFGAALKKM 433 (439)
Q Consensus 425 p~~~aL~K~ 433 (439)
++..+++.+
T Consensus 175 ~l~~~~~~~ 183 (212)
T PF07307_consen 175 PLFEALKHI 183 (212)
T ss_pred HHHHHHHHH
Confidence 999999887
No 271
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=52.09 E-value=20 Score=38.88 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=6.3
Q ss_pred CCchhhHHhH
Q 013627 283 KTPSFAQLYH 292 (439)
Q Consensus 283 rsP~vveLY~ 292 (439)
-.+++++.|.
T Consensus 369 ~~~pl~~~~p 378 (518)
T KOG1830|consen 369 TNPPLCNPFP 378 (518)
T ss_pred CCCCCCCCCc
Confidence 4456677776
No 272
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=52.08 E-value=65 Score=26.58 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqer 167 (439)
+.++..|+++++..+..++.|+.++..+.+++..++..
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666655555555554443
No 273
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=51.88 E-value=25 Score=34.45 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.5
Q ss_pred ccCCCC
Q 013627 74 ILNKPK 79 (439)
Q Consensus 74 ~lnkpk 79 (439)
|+|+++
T Consensus 77 i~n~~~ 82 (225)
T KOG3397|consen 77 LPNRDH 82 (225)
T ss_pred CCCCCc
Confidence 444443
No 274
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.79 E-value=98 Score=32.09 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+++.+.+.++.++..+....++++.+...++.+|..+...|..|.
T Consensus 203 De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 203 DELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555555555555555444444443
No 275
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.68 E-value=1.4e+02 Score=30.83 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=4.9
Q ss_pred cccCCCCCc
Q 013627 277 RAAATQKTP 285 (439)
Q Consensus 277 g~~~~~rsP 285 (439)
++.+++-.|
T Consensus 235 ~~g~~pltp 243 (333)
T KOG1853|consen 235 FMGDVPLTP 243 (333)
T ss_pred ccCCCCCCc
Confidence 445555555
No 276
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.41 E-value=2e+02 Score=31.10 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.++++|.++.-+.+.|+.+++....+..-|..|+.-|+.-+..+++...-++.
T Consensus 242 qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 242 QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 45668888888888888888888888888888888888888888887755554
No 277
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.20 E-value=1.3e+02 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkk 159 (439)
...-+.+.++|.+..+....|+.+++.|+.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666655555554
No 278
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.15 E-value=1.1e+02 Score=35.10 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=13.6
Q ss_pred hhhccCChhhHHHHHHHHh
Q 013627 200 AVGEYQSPKFKDVQKLIAN 218 (439)
Q Consensus 200 ~~~E~qs~~~KkIQklia~ 218 (439)
.+.++|..+.+++++++-.
T Consensus 604 ~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 604 EAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777788888887654
No 279
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=51.13 E-value=1.1e+02 Score=31.14 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHh
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIAN 218 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~ 218 (439)
+.++.++..++..+..+......|+.++.+-+.+|.+.+.-+.+|++ .+-.-|+.=-.+...+|++...
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~--vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS--VRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555555555554443 1112222222345555555444
No 280
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=51.12 E-value=1.2e+02 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQS---EVFALKAEFVKAQSLNA 169 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqS---ELeaLkkElekLqerNe 169 (439)
.++.++.+|....+.|+.|+. ..+.|+.++..|+..|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 444555555555555555554 44445555555555554
No 281
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=51.01 E-value=51 Score=27.35 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 158 KAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 158 kkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
++|++.++.....++.++..|+.+|+.+++
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366666666666666666666666655553
No 282
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=50.98 E-value=55 Score=29.22 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhH
Q 013627 131 KKKKEFEEKLMLSE 144 (439)
Q Consensus 131 ~~k~eLqEkLe~sE 144 (439)
.....|+.+|+...
T Consensus 24 ~K~~~Ie~qI~~Ak 37 (115)
T PF06476_consen 24 AKEQAIEKQIEYAK 37 (115)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 283
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.90 E-value=84 Score=37.49 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEn 175 (439)
..+..+.+++......+.+++.++..++.++..+..+.+.+..++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~ 420 (1163)
T COG1196 376 ELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566655555555555555555555554444444444333
No 284
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=50.79 E-value=1.5e+02 Score=24.95 Aligned_cols=85 Identities=22% Similarity=0.312 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhccccCHHHHHHHHHHHHH---HhhhhhHHHH-HHhhcCCC--cccHHHH----HHHH
Q 013627 333 LAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDK---ELSSLADERA-VLKHFKWP--EKKADAM----REAA 402 (439)
Q Consensus 333 laIk~DVe~~~~~I~~L~~~i~~~~~~d~~evv~Fv~wld~---eLs~L~DEr~-VLk~F~wP--ekK~dal----ReAa 402 (439)
..++.+++-+..++.-+..+.....-.|+++|...+...+. +|..|-..|. ++..++.. +..+..+ .+..
T Consensus 8 ~~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l~ 87 (143)
T PF05130_consen 8 ELLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREELQ 87 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHHH
Confidence 34667778888888888888888888899999999987666 4445555555 66666544 2222222 2223
Q ss_pred HHhhhHhhHHHHhcc
Q 013627 403 VEYRDLKQLENEISS 417 (439)
Q Consensus 403 ~~Y~~L~~l~~e~~~ 417 (439)
..|.+|..+..+++.
T Consensus 88 ~~~~~l~~~~~~~~~ 102 (143)
T PF05130_consen 88 ALWRELRELLEELQE 102 (143)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555543
No 285
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=50.78 E-value=1.7e+02 Score=27.83 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
.+..+..|+.++..+...+..+.....+|+.++.+++.+...+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444433333
No 286
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.47 E-value=78 Score=30.22 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.....++.+++..++.+.+++.++..+..++...+....+= .+-..+-.++..++.++..|..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKK 124 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655543211111 2445566777777777766664
No 287
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=50.45 E-value=34 Score=35.79 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHh-cchhhHHHHHHHHHhhh---------hhhHHHHHHHHhccccCHHHHHHHHH
Q 013627 315 SIAHSSIVGEIQ-NRSAHLLAIKADIETKG---------GFINSLIQKVLAAAYTNIEDLLEFVD 369 (439)
Q Consensus 315 ~~a~~~mIgEIe-nRSa~llaIk~DVe~~~---------~~I~~L~~~i~~~~~~d~~evv~Fv~ 369 (439)
.....|+-.|+. .|..| ..|+.....++ .+.-.+.. ..-.|.|++++..|+.
T Consensus 282 I~if~DlS~~~l~kRr~~-~~i~~~Lr~~~i~~~~~YPakL~i~~~G--~~~~F~~~~~~~~fl~ 343 (370)
T PF02994_consen 282 IRIFPDLSPETLQKRRKF-NPIKKKLREKGIKYRLLYPAKLRITYNG--KTKSFTDPEEAKEFLK 343 (370)
T ss_dssp EEEECTSTHHHHHHHHHH-HHHHHHHHHTTS--EEETTTEEEEESSS--SEEEESSHHHHHHHHC
T ss_pred eEEeCCCCHHHHHHHHHH-HHHHHHHHHcCCCccccCcchhcceeCC--ceecCCCHHHHHHHHH
Confidence 344567777754 45555 66666666543 11112222 2336899999999985
No 288
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=50.44 E-value=4.1e+02 Score=29.80 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=56.4
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHHhccccCHHHHHHHHHHHHHHhhhhhHHHHHHhhc---CCCcccHHH-HHHHHH
Q 013627 328 RSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF---KWPEKKADA-MREAAV 403 (439)
Q Consensus 328 RSa~llaIk~DVe~~~~~I~~L~~~i~~~~~~d~~evv~Fv~wld~eLs~L~DEr~VLk~F---~wPekK~da-lReAa~ 403 (439)
.+.||...++-|+...+-|..|-+++.++.|.-+.=+.+.. --+..|+.|-|=--|-.|| --|...+++ +|.-|.
T Consensus 430 kedhfenlkagieeiReaIddisaekfqasfelikciiahl-ikehkfskledahclehhfctlllpngdleariqrtAa 508 (666)
T KOG4825|consen 430 KEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHL-IKEHKFSKLEDAHCLEHHFCTLLLPNGDLEARIQRTAA 508 (666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cchhhhhhhhHHHHHHHhhhhhhcCCCCHHHHHHHHHH
Confidence 34666667777888888888888888777776665554432 1233456664443355566 457776664 677777
Q ss_pred HhhhHhhHHHHhccccC
Q 013627 404 EYRDLKQLENEISSYRD 420 (439)
Q Consensus 404 ~Y~~L~~l~~e~~~~~d 420 (439)
++.....+-.+.+.-..
T Consensus 509 efieelAlfkeskekqi 525 (666)
T KOG4825|consen 509 EFIEELALFKESKEKQI 525 (666)
T ss_pred HHHHHHHHHHHhhhhcc
Confidence 77666555444444333
No 289
>PRK14127 cell division protein GpsB; Provisional
Probab=50.28 E-value=50 Score=29.46 Aligned_cols=10 Identities=0% Similarity=0.092 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 013627 180 EDLVAAEAKI 189 (439)
Q Consensus 180 ~ELa~aeaQI 189 (439)
.++..+++++
T Consensus 58 ~~l~e~~~~~ 67 (109)
T PRK14127 58 AQVDELTKQV 67 (109)
T ss_pred HHHHHHHHhh
Confidence 3333333333
No 290
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.26 E-value=1.6e+02 Score=29.16 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+++|+++|...+......+..|.........|.+....++.+-..|..+...++..+..|.
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888777777666655555555555555555444444444444444444443
No 291
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.19 E-value=5.6e+02 Score=31.28 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChh
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPK 208 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk----EnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~ 208 (439)
..+|.+.+......+++++.++..+..++..++...+++.. +..+++.++..+...+..|.. +
T Consensus 890 L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 956 (1311)
T TIGR00606 890 LVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG-------------Y 956 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H
Q ss_pred hHHHHHHHHhhhhcccccccccccCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCchhh
Q 013627 209 FKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFA 288 (439)
Q Consensus 209 ~KkIQklia~~le~s~~~~~~~~~~~~~~~~~p~p~p~p~~~~~~~k~~~~~~~ppppppPpPp~p~~g~~~~~rsP~vv 288 (439)
++.|+..+...... .+-
T Consensus 957 ~~~i~~y~~~~~~~---------------------------------------------------------------qL~ 973 (1311)
T TIGR00606 957 MKDIENKIQDGKDD---------------------------------------------------------------YLK 973 (1311)
T ss_pred HHHHHHHHHcCCHH---------------------------------------------------------------HHH
Q ss_pred HHhHHhhhhcccCCCCCCCCCCCCchhhhhhhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHhcc-ccCHHHHHHH
Q 013627 289 QLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAA-YTNIEDLLEF 367 (439)
Q Consensus 289 eLY~sLk~K~~~~~~~~~~~~~~~~~~~a~~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~~~-~~d~~evv~F 367 (439)
++=..|.. ......++=+|++.-..-+..++.++.........|...|.... ...+.++..=
T Consensus 974 ~~e~el~~-----------------~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~e 1036 (1311)
T TIGR00606 974 QKETELNT-----------------VNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEE 1036 (1311)
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhHHHHHHhhc-CCCcccHHHHHHHHHHhhhHhhHHHHhcccc
Q 013627 368 VDWLDKELSSLADERAVLKHF-KWPEKKADAMREAAVEYRDLKQLENEISSYR 419 (439)
Q Consensus 368 v~wld~eLs~L~DEr~VLk~F-~wPekK~dalReAa~~Y~~L~~l~~e~~~~~ 419 (439)
+..|+.+++.+ |=..+-... .|-+.....-+..+.+.-.++.|+.++....
T Consensus 1037 I~~l~~~~~~~-~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~ 1088 (1311)
T TIGR00606 1037 LKQHLKEMGQM-QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFK 1088 (1311)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 292
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.13 E-value=1.9e+02 Score=28.56 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=4.4
Q ss_pred HHHHHHhHHHHH
Q 013627 137 EEKLMLSENLVK 148 (439)
Q Consensus 137 qEkLe~sEnlIk 148 (439)
+.++......+.
T Consensus 58 e~~~~~~~~~~~ 69 (225)
T COG1842 58 ERKLEEAQARAE 69 (225)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 293
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=49.94 E-value=5.4 Score=43.30 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeE 170 (439)
.++..|++|+.|+..|...+..
T Consensus 460 ~iqEDid~M~~El~~W~~e~~~ 481 (539)
T PF10243_consen 460 YIQEDIDSMQKELEMWRSEYRQ 481 (539)
T ss_dssp ----------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 294
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=49.80 E-value=78 Score=27.04 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
..|...++.+..++..+....+.++++..+++.+|
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 295
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=49.65 E-value=1e+02 Score=35.07 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=46.2
Q ss_pred cchHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhcc
Q 013627 128 LMDKKKKEFEEK---LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEY 204 (439)
Q Consensus 128 ~d~~~k~eLqEk---Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~ 204 (439)
.+=++..-|.|. +..+.-+.-+|+.+-+.|+.|++++....++|.+++-.-+.+|.+++..|.+.+. .-++.+|+
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~--~~~El~~~ 150 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQR--QLEELRET 150 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH--HHHHHHhh
Confidence 333444444443 2333334456666666777777777777777777777777777777777755443 22234555
Q ss_pred CCh
Q 013627 205 QSP 207 (439)
Q Consensus 205 qs~ 207 (439)
+.+
T Consensus 151 n~p 153 (907)
T KOG2264|consen 151 NNP 153 (907)
T ss_pred cCC
Confidence 544
No 296
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=49.40 E-value=79 Score=32.36 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..+.......+.++.+.++.+.++..++.+|+..++
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~ 235 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITEMKG 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444443
No 297
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=49.36 E-value=27 Score=27.13 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=33.7
Q ss_pred HHHHhhhhhhHHHHH-HHHhccccCHHHHHHHHHHHHHH-h--hhhhHHHHHHhhc-CC
Q 013627 337 ADIETKGGFINSLIQ-KVLAAAYTNIEDLLEFVDWLDKE-L--SSLADERAVLKHF-KW 390 (439)
Q Consensus 337 ~DVe~~~~~I~~L~~-~i~~~~~~d~~evv~Fv~wld~e-L--s~L~DEr~VLk~F-~w 390 (439)
.=......|+.++.. .+..+...+..+|..|+.++..+ + +++.--.+.|++| .|
T Consensus 21 ~Y~~~l~~f~~~~~~~~~~~~~~i~~~~v~~f~~~~~~~~~s~~T~~~~~~alr~f~~~ 79 (84)
T PF02899_consen 21 SYRRDLRRFIRWLEEHGIIDWEDITEEDVRDFLEYLAKEGLSPSTINRRLSALRAFFRF 79 (84)
T ss_dssp HHHHHHHHHHHHHHHTTS-CGGG--HHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 333344556666666 66666677888999999888773 3 3465667788887 55
No 298
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=49.35 E-value=1.6e+02 Score=28.85 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSL--NAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqer--NeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
|-.++.--+..++.|+..+.....|+..|... ..+++.++.+|+.++..-+..+.++++
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444332 233444555555555555555544443
No 299
>PRK14158 heat shock protein GrpE; Provisional
Probab=49.22 E-value=1.1e+02 Score=29.83 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeEL 171 (439)
+......|+++|+..+..+.+|+.++..+..++++++.+...-
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE 80 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKE 80 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688999999999999999999999999999988776653
No 300
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=49.01 E-value=46 Score=27.48 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
.+..|+.++..+..++..+......++.+..+++.+|
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444444443
No 301
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=48.94 E-value=86 Score=32.23 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQS 152 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqS 152 (439)
++|++++.....++..|..
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4667777666666666665
No 302
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.87 E-value=1.2e+02 Score=36.88 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..+|+.+|+.++..+++.+..|..+..++..++....+.+++...++.+...+..++..+..
T Consensus 523 ~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rq 584 (1293)
T KOG0996|consen 523 VEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQ 584 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666677777776666666666666666666655555554443
No 303
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=48.81 E-value=1.1e+02 Score=36.58 Aligned_cols=42 Identities=21% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.+..|+++|++.-....+|+++|+.+.+|+..+++.+.++..
T Consensus 185 kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 185 KIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555433
No 304
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=48.72 E-value=1.2e+02 Score=27.53 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSE--NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (439)
Q Consensus 131 ~~k~eLqEkLe~sE--nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ 184 (439)
.+++....=|--+. ..+.+|+.+++.|..++..+..+...++.+..+|++.|..
T Consensus 54 ~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 54 PVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433322 2224444444444444444444444444444444444433
No 305
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=48.28 E-value=84 Score=30.07 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=40.7
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
-|+|-...-++-+.|++..+.+..|+.+...|...+ ..+.+++..++++...|...+..+
T Consensus 99 gg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~I----v~~~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 99 GGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNI----VTEKLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhc----cccHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555678888888888888888887776553 355666667777777776666554
No 306
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=48.07 E-value=1.3e+02 Score=25.41 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL---NAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqer---NeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+..-+|-++.-.....++.|+.+-..+.+++..++.. .++|-.+.+.+..++..++.++..+.
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555566666555542 44555567777777777777665554
No 307
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.94 E-value=1.7e+02 Score=31.89 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
--+|+++|...++-...|..|+..+..|-..+.....++|-++.+|+.+.
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~ 64 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEEN 64 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667666666666666666665555444444444443333333333
No 308
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=47.89 E-value=3.4e+02 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkE 174 (439)
++|+..-.+|..++++|..+-+++++|
T Consensus 7 ~eL~qrk~~Lq~eIe~LerR~~ri~~E 33 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLERRRERIEKE 33 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 309
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=47.87 E-value=55 Score=31.93 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 128 LMDKKKKEFEEKLMLSENLVK-------------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 128 ~d~~~k~eLqEkLe~sEnlIk-------------eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
..|..|..|=..|-+..+.|+ +|+.+-+.|+..+..+...+..|++++.+|..++..+..++.
T Consensus 75 L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 75 LEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred cChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 345667777777777777765 556666778888888888888888888888888887777664
No 310
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=47.85 E-value=1.7e+02 Score=24.82 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...|..++..|+.-+..+..+.+..+.|+..|+.+=.-+..=|..|-
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777666666665553
No 311
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=47.65 E-value=1.8e+02 Score=24.98 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q 013627 174 QNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 174 EnkELr~ELa~aeaQI~sL~ 193 (439)
++..|..+|..+...+..+.
T Consensus 82 ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444333
No 312
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=47.62 E-value=57 Score=24.81 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr 179 (439)
..+..|..++..|...|..|+.++..|+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444443
No 313
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=47.56 E-value=1.8e+02 Score=27.47 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa 183 (439)
+..+...|+.+++.|...+.
T Consensus 94 L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444433333
No 314
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=47.48 E-value=44 Score=32.78 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+...+++.+..+|+.+|..+.+|+.-|.+=+.--|+...+|+.+|
T Consensus 37 ~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 37 EFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777778888777777777776666666666555555444
No 315
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.26 E-value=1.6e+02 Score=37.66 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=14.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELE 172 (439)
++++++..+.....|+.+...+..++..+.+..+++|
T Consensus 913 ~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E 949 (1930)
T KOG0161|consen 913 LKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELE 949 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334333333344444444444333
No 316
>PRK14162 heat shock protein GrpE; Provisional
Probab=47.03 E-value=2.3e+02 Score=27.54 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=40.7
Q ss_pred ccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 123 KIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 123 ~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
+-+|....+....|+++++..+..+.+|+.++..+..++++++.+...
T Consensus 31 ~~~~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 31 KEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677788899999999999999999999999999998877655
No 317
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.79 E-value=89 Score=37.91 Aligned_cols=63 Identities=25% Similarity=0.282 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.-..+++.+|...++.|.+++.+++.|..++..+.+...+++.+.++-.+-+..+..++..+.
T Consensus 935 ~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k 997 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLK 997 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666666666666666666666655554444444444444443333
No 318
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=46.37 E-value=1.1e+02 Score=29.40 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH---------------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVF---------------------------A-LKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELe---------------------------a-LkkElekLqerNeELEkEnkELr~EL 182 (439)
.+.+..++.|+...+..++++..+. . +..++..+++.|+.|+.++..|+.+.
T Consensus 55 ~vrk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 55 VVRKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777763310 0 44677777778888888888887777
Q ss_pred HHHHHHHhhhc
Q 013627 183 VAAEAKIASLS 193 (439)
Q Consensus 183 a~aeaQI~sL~ 193 (439)
...+.....|-
T Consensus 135 ~~~~eDy~~Li 145 (170)
T PRK13923 135 AITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHH
Confidence 77776665444
No 319
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.18 E-value=6.4e+02 Score=30.80 Aligned_cols=99 Identities=23% Similarity=0.192 Sum_probs=47.3
Q ss_pred hhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHhccccCHHHHHHHHHHHHHHhhhhhHHHHHHhhc--CCCcccHH
Q 013627 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF--KWPEKKAD 396 (439)
Q Consensus 319 ~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~~~~~d~~evv~Fv~wld~eLs~L~DEr~VLk~F--~wPekK~d 396 (439)
+++..|+.+=-+-+..++.|+.+....|+...+.+...+ +.|..++.--+.+.++.+.+..|+.-|.|- -+++.+.+
T Consensus 846 ~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d-t~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~ 924 (1174)
T KOG0933|consen 846 SSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID-TEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKAN 924 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh-HHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHH
Confidence 444444444444444555666666666665555554321 124444444444555555555555555544 44444444
Q ss_pred HHHHHHHHhhhHhhHHHHhccc
Q 013627 397 AMREAAVEYRDLKQLENEISSY 418 (439)
Q Consensus 397 alReAa~~Y~~L~~l~~e~~~~ 418 (439)
+--++..+-.+..-|..|-..|
T Consensus 925 ~~k~v~~l~~k~~wi~~ek~~f 946 (1174)
T KOG0933|consen 925 ARKEVEKLLKKHEWIGDEKRLF 946 (1174)
T ss_pred HHHHHHHHHHhccchhHHHHhh
Confidence 4444444433434343333333
No 320
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.06 E-value=1.1e+02 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..+..++|++|+...+.++.+++.|+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444
No 321
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=46.05 E-value=1.3e+02 Score=25.64 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+|.-.+...+++...+..+..++..+.+....|+.|+..-.+++-.+
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~ 50 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAA 50 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443333
No 322
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.93 E-value=79 Score=28.73 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNe 169 (439)
+..+++|+++++..+.-++-|+++-..+++++..++..+.
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666655555554443
No 323
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=45.86 E-value=91 Score=31.94 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 169 AELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 169 eELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..||.|+..++.+..-+|+|+..++
T Consensus 168 ~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 168 VVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 3344455555555555555555444
No 324
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=45.74 E-value=1.2e+02 Score=25.08 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVK-AQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElek-LqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.++.|+...++.=.|+-+|.-|.+.+.. .-..+..+.++|.+|+.++..+..++..+.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~ 63 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKK 63 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555544443 233344455677777777777776665444
No 325
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.73 E-value=73 Score=29.72 Aligned_cols=55 Identities=16% Similarity=0.056 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+|.++...+.......+-.-+.+|.+|..-...=.+....|.+|+..|+++|...
T Consensus 54 ~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 54 KIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433344444443222222333444444444444444433
No 326
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=45.68 E-value=1.5e+02 Score=35.18 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
++.++-+|-+.++.+..|++++..|+.-+..+++...+
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke 138 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKE 138 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555444444444433
No 327
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=45.27 E-value=1.8e+02 Score=26.85 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEV 154 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSEL 154 (439)
|.+++++-..+...|+...
T Consensus 54 l~~kIeERn~eL~~Lk~~~ 72 (177)
T PF13870_consen 54 LNEKIEERNKELLKLKKKI 72 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444333
No 328
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=45.17 E-value=4.1e+02 Score=28.27 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKD----LQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIke----LqSELeaLkkElekLqerNeELEk 173 (439)
|++.++|++.++.+++.... |.++...+......+......|..
T Consensus 254 ~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~ 301 (412)
T PF04108_consen 254 PDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRK 301 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888777 666666666555555555555554
No 329
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=45.16 E-value=75 Score=35.53 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
.+.+.++=|+.+|..+=++++.|++.|+.+++++++++.+|.+.+.+
T Consensus 360 v~nsI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 360 VSNSINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999999999999888876
No 330
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=45.14 E-value=61 Score=28.62 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
.++.++.+++++++.+..++..|+.|++.|+..
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344445555566666666666666666665555
No 331
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.11 E-value=72 Score=33.74 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFAL 157 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaL 157 (439)
+-....+.+++...+..+..|+.+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (398)
T PTZ00454 14 THTERDLYEKLKELEKELEFLDIQEEYI 41 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444333333333333333
No 332
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=45.00 E-value=77 Score=35.39 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+..+.++..-|..+..|+.-++.+...|+.+++.|+.+..++..+|..++
T Consensus 140 re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 140 REKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33334444555555566666666666666666666666666666555444
No 333
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=44.84 E-value=1.3e+02 Score=33.80 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=25.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
++......+.+++.++..++..+..+.+....|.+||..|..+|..++.++
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555554444444
No 334
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=44.53 E-value=2.2e+02 Score=28.63 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=48.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHhh
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANK 219 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~~ 219 (439)
.-++..++++|+++..-+-+++...+++.+..+++.+++...|+.....+.-... ..-+|.+..+-..
T Consensus 38 ~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~------------k~~~dF~~~Lq~~ 105 (230)
T PF03904_consen 38 MSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTE------------KVHNDFQDILQDE 105 (230)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 3444557788888888888888888888888888888888877776666532221 2345666666666
Q ss_pred hhc
Q 013627 220 LEH 222 (439)
Q Consensus 220 le~ 222 (439)
|++
T Consensus 106 Lk~ 108 (230)
T PF03904_consen 106 LKD 108 (230)
T ss_pred HHh
Confidence 665
No 335
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.42 E-value=1e+02 Score=26.47 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 167 LNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 167 rNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.=..||+|...+.+++..-+.++..|..
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4455777888888888888888877774
No 336
>PHA02109 hypothetical protein
Probab=44.34 E-value=43 Score=32.69 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=13.5
Q ss_pred cceeeeecCccchhcccCccc
Q 013627 93 VKVFGRSLNRPVVEQFARPRR 113 (439)
Q Consensus 93 ~~~~~~s~~R~~v~qf~~~r~ 113 (439)
..|.-|.++|..++--+++|.
T Consensus 138 L~VL~R~R~~~~~E~k~r~~~ 158 (233)
T PHA02109 138 LAVLTRTRRIETIEKKTRVRP 158 (233)
T ss_pred chhhhhhhhhhhhhhhcCCCC
Confidence 344557777777777666663
No 337
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=44.12 E-value=1.4e+02 Score=29.10 Aligned_cols=97 Identities=21% Similarity=0.384 Sum_probs=0.0
Q ss_pred hhHHHHHhcchhhHHHHHHHHHh-hhhhhHHHHHHHHhccccCHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCcccHHH
Q 013627 319 SSIVGEIQNRSAHLLAIKADIET-KGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADA 397 (439)
Q Consensus 319 ~~mIgEIenRSa~llaIk~DVe~-~~~~I~~L~~~i~~~~~~d~~evv~Fv~wld~eLs~L~DEr~VLk~F~wPekK~da 397 (439)
+.+||.+-+ .|| ..++ .++........+.--+-.||.+|-+.|-.||..+..| +| .| +.+.|.
T Consensus 38 Sa~IG~vLd--~yL-----~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~l-ee-----~f---dd~~d~ 101 (189)
T TIGR02132 38 SALMGNVLD--LNL-----FYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLI-EE-----FF---DDKFDE 101 (189)
T ss_pred HHHHHHHHH--HHH-----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HH-----HH---HHHHHH
Q ss_pred HH----HHHHHhhhHhhHHHHhccccCCCCCcHHHHHHHHHhhhcC
Q 013627 398 MR----EAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDK 439 (439)
Q Consensus 398 lR----eAa~~Y~~L~~l~~e~~~~~d~p~~p~~~aL~K~~~l~dk 439 (439)
|+ .+..+-.++.+|+..|.+ ++.=+|||..|++.
T Consensus 102 l~~q~eq~~~~~~~v~~~~q~~~~--------l~~K~D~~L~llE~ 139 (189)
T TIGR02132 102 LEAQQEQAPALKKDVTKLKQDIKS--------LDKKLDKILELLEG 139 (189)
T ss_pred HHHHHhhCchHHhHHHHHHHHHHH--------HHHHHHHHHHHHhc
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.06 E-value=1.1e+02 Score=34.15 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=3.0
Q ss_pred hhHHHHH
Q 013627 208 KFKDVQK 214 (439)
Q Consensus 208 ~~KkIQk 214 (439)
.|..+..
T Consensus 620 ~w~~l~~ 626 (638)
T PRK10636 620 AWLEAQE 626 (638)
T ss_pred HHHHHHH
Confidence 3444443
No 339
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.01 E-value=1.2e+02 Score=37.71 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHH--HHhccccCHHHHHHHHHHHHHHhhhhhHH
Q 013627 330 AHLLAIKADIETKGGFINSLIQK--VLAAAYTNIEDLLEFVDWLDKELSSLADE 381 (439)
Q Consensus 330 a~llaIk~DVe~~~~~I~~L~~~--i~~~~~~d~~evv~Fv~wld~eLs~L~DE 381 (439)
..|...+.|.+.+.....-|... .....+.|.+++..+....+.+|+.|.++
T Consensus 520 ~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1486)
T PRK04863 520 MRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSES 573 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777766666655554 33456778888888887777777776654
No 340
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=43.86 E-value=2.7e+02 Score=29.40 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNA 169 (439)
Q Consensus 150 LqSELeaLkkElekLqerNe 169 (439)
.+.+|..+..++....++..
T Consensus 239 ~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 239 TKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 341
>PRK04863 mukB cell division protein MukB; Provisional
Probab=43.83 E-value=1.2e+02 Score=37.67 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=4.5
Q ss_pred chhhHHhHHhhh
Q 013627 285 PSFAQLYHSLTK 296 (439)
Q Consensus 285 P~vveLY~sLk~ 296 (439)
|++-.=+..|..
T Consensus 516 ~~~~~~~~~l~~ 527 (1486)
T PRK04863 516 QQLRMRLSELEQ 527 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 342
>PRK02224 chromosome segregation protein; Provisional
Probab=43.80 E-value=1.1e+02 Score=34.68 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=3.1
Q ss_pred ccCCCCC
Q 013627 418 YRDDTNV 424 (439)
Q Consensus 418 ~~d~p~~ 424 (439)
+-|+|..
T Consensus 816 ilDEp~~ 822 (880)
T PRK02224 816 ILDEPTV 822 (880)
T ss_pred EecCCcc
Confidence 3444443
No 343
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.71 E-value=1.2e+02 Score=26.98 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa 183 (439)
++.|.=+|++|.+.+..|+.++.
T Consensus 49 ~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 49 NDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555445555554
No 344
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=43.54 E-value=65 Score=32.52 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 013627 170 ELEKQNKKLVEDL 182 (439)
Q Consensus 170 ELEkEnkELr~EL 182 (439)
+|++||.+|++-|
T Consensus 95 ~l~~EN~rLr~LL 107 (283)
T TIGR00219 95 NLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHh
Confidence 3555555555544
No 345
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=43.07 E-value=1.3e+02 Score=25.97 Aligned_cols=46 Identities=17% Similarity=0.128 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.++..+.+.|++|..-+..+.++|+.|+.+..+|-+--.+.+.++
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888888888887776666654444444433
No 346
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=42.86 E-value=1e+02 Score=32.54 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..++.++..+..++..+..++..++.++..++.++..++.++..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 18 RDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555666666666666666666666666666666655554
No 347
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.82 E-value=95 Score=34.21 Aligned_cols=89 Identities=17% Similarity=0.382 Sum_probs=54.1
Q ss_pred HHHHHHhccc--cCHHHHHHHHHHHHHHhhhhhHHHH-HHhhcCCCcccHHHHHHHHHHhhhHhhHHHHhccccCCCCCc
Q 013627 349 LIQKVLAAAY--TNIEDLLEFVDWLDKELSSLADERA-VLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVP 425 (439)
Q Consensus 349 L~~~i~~~~~--~d~~evv~Fv~wld~eLs~L~DEr~-VLk~F~wPekK~dalReAa~~Y~~L~~l~~e~~~~~d~p~~p 425 (439)
|-+++.+.++ ..+..+..|+.++......|..|.. |=..|.+.+.-++..|.....-..|..--..+..--.+-..|
T Consensus 294 le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~ 373 (560)
T PF06160_consen 294 LEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVP 373 (560)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3445555443 6778888888899998888888876 555668887777777766644444422222222222223456
Q ss_pred HHHHHHHHHhhh
Q 013627 426 FGAALKKMASLL 437 (439)
Q Consensus 426 ~~~aL~K~~~l~ 437 (439)
.......+..+.
T Consensus 374 yS~i~~~l~~~~ 385 (560)
T PF06160_consen 374 YSEIQEELEEIE 385 (560)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 348
>PRK10698 phage shock protein PspA; Provisional
Probab=42.72 E-value=1.8e+02 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
++..|..++.......++|+.++..|+.+|..++.+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333334333333
No 349
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=42.53 E-value=87 Score=24.68 Aligned_cols=39 Identities=23% Similarity=0.205 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
..|+++-++=.-+-.....++.+|+.||..|+++|....
T Consensus 11 ~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 11 RKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444433334455667778888888888888887654
No 350
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.52 E-value=2.1e+02 Score=34.52 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkE 174 (439)
.|+++++..+..+..++.....+.+.+.......+.+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~ 643 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKRE 643 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444444444444444443333333333333333
No 351
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=42.16 E-value=1.8e+02 Score=28.21 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=14.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekL 164 (439)
++..+...+..+..++.++..++.++...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 90 (322)
T TIGR01730 62 YQLALQAALAQLAAAEAQLELAQRSFERA 90 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444443
No 352
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=42.10 E-value=99 Score=30.44 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
....-|.+-|++++.+ ...|..+.+|+..+++.|.+|.. |-.++..+..-|..|.
T Consensus 115 ~RR~AL~eaL~ENe~L----h~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~ 169 (200)
T PF07412_consen 115 ERRKALEEALEENEKL----HKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLT 169 (200)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 3445566666666654 44555677777777766666654 4444444444444443
No 353
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.02 E-value=85 Score=32.72 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 163 KAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 163 kLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.++..+.+|+.+...++.++..++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (389)
T PRK03992 19 QLELKLRDLEAENEKLERELERLKSEL 45 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 354
>PLN02320 seryl-tRNA synthetase
Probab=41.78 E-value=1.2e+02 Score=33.49 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=11.8
Q ss_pred HHHHhhhhh-HHHHHHhhcCCCcc
Q 013627 371 LDKELSSLA-DERAVLKHFKWPEK 393 (439)
Q Consensus 371 ld~eLs~L~-DEr~VLk~F~wPek 393 (439)
.+.+++.|. ....+++.||.|-.
T Consensus 357 s~~e~e~ll~~~e~i~~~LgLpyr 380 (502)
T PLN02320 357 SESFHEELIQIEEDLFTSLGLHFK 380 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeE
Confidence 334444433 33447777777643
No 355
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=41.61 E-value=1.2e+02 Score=27.63 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 130 DKKKKEFEEKLMLSENLVK-------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIk-------eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
|.++.=||.+=--.|.... +|+.+|..|.-|...+...+.+|-+-++-|+-.|.+-++++..+..
T Consensus 3 pGVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 3 PGVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3444445544444444433 5555555555555555555666666666666666666666655554
No 356
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=41.55 E-value=2.9e+02 Score=28.94 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVK 163 (439)
Q Consensus 148 keLqSELeaLkkElek 163 (439)
+.|..+|..|+.|...
T Consensus 109 n~L~rkl~qLr~EK~~ 124 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVE 124 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445444444433
No 357
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.53 E-value=2.2e+02 Score=27.50 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
+.....|+.++..+...+..++.+..+|+.++.+++.+
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 358
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.48 E-value=1.3e+02 Score=26.69 Aligned_cols=23 Identities=52% Similarity=0.541 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013627 167 LNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 167 rNeELEkEnkELr~ELa~aeaQI 189 (439)
+...|+++..+|+.++..++.++
T Consensus 86 ~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 86 RSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433333
No 359
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=41.43 E-value=18 Score=31.61 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 135 EFEEKLMLSENLVKDLQSEVF-ALK-------AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELe-aLk-------kElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+++...+..+.++.+|...|. ..+ .+...++.++..|+++.++.+..|..+..|+..|+
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554442 122 22233334444444444444444444444444333
No 360
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.37 E-value=1.5e+02 Score=25.35 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~ae 186 (439)
++...|....+.++.+|..|.++|...+
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555443
No 361
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.35 E-value=1.5e+02 Score=30.77 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=45.3
Q ss_pred chhcccCccccccccCCCCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 104 VVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 104 ~v~qf~~~r~~~~~~~~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
.-+||--|=-|+ .=-+--|.-+|.++++-..+-.++|..|+..+...++-- .|.|..++++||
T Consensus 55 ~PEQYLTPLQQK--------------EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQL 117 (305)
T PF15290_consen 55 NPEQYLTPLQQK--------------EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQL 117 (305)
T ss_pred CHHHhcChHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 557777766444 234678999999999999999999999999988866543 334444444444
No 362
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.35 E-value=2.2e+02 Score=26.34 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
.|+|.........++.+|......+..+......+..+...++.+...+
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333
No 363
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=41.29 E-value=1.4e+02 Score=31.43 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=21.5
Q ss_pred cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013627 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (439)
Q Consensus 124 ~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLk 158 (439)
|+.-.-+.-.+.|+++++..++.+.+|+.+|....
T Consensus 235 ~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 235 LAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333356667777777777777777776665543
No 364
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=41.20 E-value=1e+02 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 156 aLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.|...+..+++.+..+..++..++..+...+.++..++
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666677777777776666665554
No 365
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.15 E-value=57 Score=35.96 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=24.2
Q ss_pred hhhhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHH
Q 013627 317 AHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQK 352 (439)
Q Consensus 317 a~~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~ 352 (439)
+..+++.+|+. .| .+|..||..+..-+..|...
T Consensus 459 ~~~~~~~~~~~--~w-~~~~~~~~~~~~~~~~~~~~ 491 (585)
T PRK14950 459 ADGDVLEQLEA--IW-KQILRDVPPRSPAVQALLSS 491 (585)
T ss_pred CcchhHHHHHH--HH-HHHHHHHhhcCHHHHHHHhC
Confidence 45788888985 56 78999999877666555443
No 366
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.91 E-value=2.7e+02 Score=28.24 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=4.2
Q ss_pred hHHhHHhhh
Q 013627 288 AQLYHSLTK 296 (439)
Q Consensus 288 veLY~sLk~ 296 (439)
-+||..|+.
T Consensus 221 nnFs~FL~n 229 (246)
T KOG4657|consen 221 NNFSSFLEN 229 (246)
T ss_pred ccHHHHHHH
Confidence 345554443
No 367
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=40.87 E-value=95 Score=30.57 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 160 ElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
|-+.|...+..+|.||.-|++-|++.+.++.+|+.
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555554443
No 368
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.83 E-value=2.6e+02 Score=29.04 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.|.+-+....+...+|..++..+.++-..+-....++-.+..+|+.+......+|..++.
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555444444444444444555555555555555555553
No 369
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=40.78 E-value=1.6e+02 Score=29.46 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=33.9
Q ss_pred ccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 125 EDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 125 ~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
++++||-|..+| |+|-.+...|+.|+.+|+..+..+..+.
T Consensus 2 ~e~~dprVq~eL-e~LN~atd~IN~lE~~L~~ar~~fr~~l 41 (239)
T PF05276_consen 2 EEELDPRVQEEL-EKLNQATDEINRLENELDEARATFRRLL 41 (239)
T ss_pred ccccccHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899888777 6899999999999999999888877644
No 370
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.62 E-value=1.4e+02 Score=33.22 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=22.1
Q ss_pred HHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHhc
Q 013627 321 IVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAA 356 (439)
Q Consensus 321 mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~~ 356 (439)
-|-+++|.|-. .++||.+.-..|++|-..++..
T Consensus 474 ~~~~e~nksi~---Lee~i~~~~~~i~El~~~l~~~ 506 (622)
T COG5185 474 RIKTEENKSIT---LEEDIKNLKHDINELTQILEKL 506 (622)
T ss_pred HHHHHhcccee---HHHHhhhHHhHHHHHHHHHHHH
Confidence 34455666644 4688888888888887776643
No 371
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=40.56 E-value=5.8e+02 Score=29.30 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=36.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.++++-+|+..+....+|+.+.+....+|++++.++...++.+...+
T Consensus 21 ~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel 68 (732)
T KOG0614|consen 21 ELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNEL 68 (732)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456777788888888888888888888888888777777777766544
No 372
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=40.54 E-value=2.6e+02 Score=33.89 Aligned_cols=11 Identities=9% Similarity=0.018 Sum_probs=6.1
Q ss_pred hhhhHHHHHhc
Q 013627 317 AHSSIVGEIQN 327 (439)
Q Consensus 317 a~~~mIgEIen 327 (439)
.+...|-|+.+
T Consensus 788 es~rn~~e~s~ 798 (1195)
T KOG4643|consen 788 ESNRNIRENSA 798 (1195)
T ss_pred hhccchhhccc
Confidence 34555666665
No 373
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.44 E-value=5.4e+02 Score=28.39 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=15.9
Q ss_pred hhc-CCCcccHHHHHHHHHHhhhH
Q 013627 386 KHF-KWPEKKADAMREAAVEYRDL 408 (439)
Q Consensus 386 k~F-~wPekK~dalReAa~~Y~~L 408 (439)
.+| ..-..-..++.+|-.+|++.
T Consensus 510 nRfr~~~~~V~~~f~~Ae~lF~~~ 533 (569)
T PRK04778 510 NRYRSDNEEVAEALNEAERLFREY 533 (569)
T ss_pred hccCCCCHHHHHHHHHHHHHHHhC
Confidence 456 33357778888888888665
No 374
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.31 E-value=1.1e+02 Score=30.26 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
-..+.=|.+.|.++..++..--++|.+|+..+......+...+.++..|+..+......+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~EL 68 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLEL 68 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH
Confidence 455777888888888888877777777777777666666666666666666554444333
No 375
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=40.20 E-value=1.6e+02 Score=33.54 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=40.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 135 EFEEKLMLSENLVKDLQSEVFA----LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELea----LkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
.+...|...+++|.+|-.+++. +.++.+.+..+...||++++...+.+..++.++.
T Consensus 282 ~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 282 ALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677777777777664 4477788888888888887777777777766664
No 376
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=40.18 E-value=27 Score=30.37 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHh
Q 013627 149 DLQSEVFALKAEFVKAQSLNAEL---EKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIAN 218 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeEL---EkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~ 218 (439)
.++.++..++.++...+.....| +.+...++.++..+...+.. ......+..+|+.++..
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~----------~~~~~~ll~~l~~~A~~ 65 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPA----------EEEIPSLLEDLNRLAKK 65 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTG----------GGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC----------chhHHHHHHHHHHHHHH
Confidence 34445555555555544433333 33444455555544443321 11223356667775443
No 377
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=40.06 E-value=3e+02 Score=25.63 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNe 169 (439)
.|++..|.|-+++.+...|+.+|++|+.|...+.+-.+
T Consensus 21 aKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 21 AKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45666788888888889999999998766555544443
No 378
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=39.94 E-value=1.3e+02 Score=35.45 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..|++.|..-++.|..||+++..+..|+..+|....-++.+.++-+.+|..+.+.+
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srl 150 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRL 150 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56777777777777777777777777777777777777776555555554444333
No 379
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=39.85 E-value=1.8e+02 Score=29.72 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=53.0
Q ss_pred cccCCCCccccCcchHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 013627 116 IVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQ-----------SEVFALKAEFVKAQSLNAE--------LEKQNK 176 (439)
Q Consensus 116 ~~~~~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLq-----------SELeaLkkElekLqerNeE--------LEkEnk 176 (439)
+.+.|...+.- +..-.+||..|.+++.+..++. ++++.|+-+...+| .|.+ +-.|..
T Consensus 149 ~~~~ngq~l~G---d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQ-l~g~Ld~~~q~~~~ae~s 224 (289)
T COG4985 149 RFDSNGQELDG---DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQ-LNGQLDDEFQQHYVAEKS 224 (289)
T ss_pred eeccCCCcccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccHHHHHHHHHHHH
Confidence 56666666652 4577899999999888876442 44444443333322 2222 223678
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHH
Q 013627 177 KLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDV 212 (439)
Q Consensus 177 ELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkI 212 (439)
+|+.+++.++.++.+|.. ..+|++..|.|.
T Consensus 225 eLq~r~~~l~~~L~~L~~------e~~r~~l~~~Dm 254 (289)
T COG4985 225 ELQKRLAQLQTELDALRA------ELERQFLYLVDM 254 (289)
T ss_pred HHHHHHHHHHHHHHHHhh------hhhhceEEEEcc
Confidence 888888888888877774 234555555553
No 380
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=39.68 E-value=2.3e+02 Score=29.99 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN 168 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerN 168 (439)
..+..++.+-+....+.++-++++...|..++..++.+.
T Consensus 327 ~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~ 365 (458)
T COG3206 327 QQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRL 365 (458)
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443333
No 381
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=39.63 E-value=1.4e+02 Score=34.70 Aligned_cols=50 Identities=24% Similarity=0.261 Sum_probs=24.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
.|+.....+++++..|..|+.++..+++.+..+|.+++-.+..+..++.+
T Consensus 618 ~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~ 667 (769)
T PF05911_consen 618 QLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETR 667 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444445555555555555555555555555444444444333333
No 382
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.53 E-value=2.1e+02 Score=28.32 Aligned_cols=45 Identities=29% Similarity=0.301 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.|++.+..+...+..+.+..+.|+..+..|+.+|..++.+...+.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444333
No 383
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=39.41 E-value=1.6e+02 Score=35.29 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVF 155 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELe 155 (439)
...+++++++|+..++.+.+++..+.
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666665555
No 384
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=39.35 E-value=3.7e+02 Score=28.47 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkE 174 (439)
.+..+..++..++.+.+.|+++
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~ 339 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTAR 339 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 385
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=39.34 E-value=22 Score=30.70 Aligned_cols=42 Identities=29% Similarity=0.352 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+..|..++..|+.++..+...+..++.....|+..|..++..
T Consensus 34 ~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~ 75 (131)
T PF05103_consen 34 LERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQET 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhh
Confidence 333334444444444444444444444444444444444433
No 386
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=39.28 E-value=2.1e+02 Score=23.21 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALK-----AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLk-----kElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
...++|...+..+.++...+.... ..+..+..-..-|+..+..++.++..++.++.
T Consensus 16 ~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 76 (123)
T PF02050_consen 16 EAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVE 76 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444 44444444444455555555555555555553
No 387
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.28 E-value=2.5e+02 Score=25.10 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.++..++.+..++-.+.+.|+.++..+..+.
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~ 85 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKELESEYQEKEQQQ 85 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444433
No 388
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.18 E-value=1.8e+02 Score=34.76 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=17.0
Q ss_pred ccCHHHHHHHHHHHHHH-h-hhhhHHHHHHhhc
Q 013627 358 YTNIEDLLEFVDWLDKE-L-SSLADERAVLKHF 388 (439)
Q Consensus 358 ~~d~~evv~Fv~wld~e-L-s~L~DEr~VLk~F 388 (439)
...|...+.|+.++-+. | +.|-||.+.++..
T Consensus 730 ~e~i~k~l~yfq~m~s~hl~~qllde~q~~~d~ 762 (1243)
T KOG0971|consen 730 VEPITKALKYFQHLYSIHLAEQLLDETQQLADH 762 (1243)
T ss_pred cchHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 45577777777665552 2 3355665544433
No 389
>PTZ00464 SNF-7-like protein; Provisional
Probab=39.16 E-value=2.7e+02 Score=27.34 Aligned_cols=64 Identities=9% Similarity=0.168 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA--------QSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekL--------qerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+.++.|+.+++..+.-|+.+..++...++.+... +.++..+=+..+.++.++.++..+...|..
T Consensus 18 d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq 89 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQ 89 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458889999988888888888888777666433 334444445667777777777777655553
No 390
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=39.09 E-value=2.5e+02 Score=27.83 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQ--SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLq--SELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
..++.|++.+-....-++++. +.|+.|++.+..+.........+..+.+..|..+-.
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~ 67 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQ 67 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777766666666666 555555555444444444444444444444444433
No 391
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=39.04 E-value=1.8e+02 Score=25.30 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=22.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 152 SEVFALKAEF-VKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 152 SELeaLkkEl-ekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
.++.+|++-- ..++.+.++|+.++..|..++..++.++.
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554222 22566666666666666666666666663
No 392
>PRK14160 heat shock protein GrpE; Provisional
Probab=39.03 E-value=1.4e+02 Score=29.44 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAEL 171 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeEL 171 (439)
.+|+.++..+..++..+.+...+|
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~el 80 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEAL 80 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 393
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=39.02 E-value=81 Score=31.04 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 163 KAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 163 kLqerNeELEkEnkELr~ELa 183 (439)
.+.++|++|++|+.+|+.++.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 73 DLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 394
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.88 E-value=2.5e+02 Score=24.03 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhh
Q 013627 135 EFEEKLMLSENLV-KDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 135 eLqEkLe~sEnlI-keLqSELeaLkkElekLqerNeELEk---EnkELr~ELa~aeaQI~sL 192 (439)
+|-|+|-...... .++...+..+...+..+.++..+|+. ++..+..++..++.-+..|
T Consensus 24 ~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 24 NLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 395
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=38.62 E-value=1.5e+02 Score=28.21 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=37.1
Q ss_pred CCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 121 PGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 121 ~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
-..|+...|++-++-+.+.+...++.+..+.-.+....+-+....+..+.|+..++.|...|.-.-+.+
T Consensus 34 ~~rve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~ 102 (157)
T COG3352 34 HSRVENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDF 102 (157)
T ss_pred hcccccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344667777777777777777777777655444444444444444444444444444444444333333
No 396
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=38.59 E-value=2.2e+02 Score=27.19 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=32.1
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
++--.++.+.+.++|+..++.|++|.+..+.+..++.-+++++.+
T Consensus 67 ~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~q 111 (157)
T COG3352 67 IEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQ 111 (157)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHH
Confidence 333345666677888888888899988888877777776665543
No 397
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=38.37 E-value=2.5e+02 Score=24.16 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=32.2
Q ss_pred cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 124 ~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkE 174 (439)
-.|+.+...+..|.-.|+.-..-...|+.+-+.|..++..|.+-|.+...+
T Consensus 19 ~~~e~~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e 69 (83)
T PF03670_consen 19 EDDEFDEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLE 69 (83)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345555566666777777666666666666666666666666655555543
No 398
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.27 E-value=2.3e+02 Score=33.76 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.--+.+....|.++++++..+.-++...+..+++-..|...|+.+++.+.+.=
T Consensus 350 ~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r 402 (980)
T KOG0980|consen 350 ENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASR 402 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777888888888887777766666665555556666665555443
No 399
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=38.16 E-value=70 Score=32.64 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+++.|++++..++...+.+++|+.++++++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344445555555555333
No 400
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=38.10 E-value=1.6e+02 Score=26.07 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
-+...+.+-++..++-++.|+..+..+..++..++++.+.++....++..+
T Consensus 87 ~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 87 SAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888888888888888887777777777777766665544
No 401
>PLN02678 seryl-tRNA synthetase
Probab=38.07 E-value=2.3e+02 Score=30.84 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhch
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEk---EnkELr~ELa~aeaQI~sL~s 194 (439)
...+++.+++.|+.+...+..+...+.. +..+|..++..++.+|..+..
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~ 92 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEA 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433221 344555566666666655553
No 402
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=37.95 E-value=2e+02 Score=31.64 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.|-..|.+...-..++......++....+++.++..++.++..|..
T Consensus 436 rl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~ 481 (507)
T PF05600_consen 436 RLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVE 481 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444444444445555555555666666667777666665554
No 403
>PRK00106 hypothetical protein; Provisional
Probab=37.80 E-value=3.6e+02 Score=30.15 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=23.0
Q ss_pred hhHHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHH
Q 013627 319 SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVL 354 (439)
Q Consensus 319 ~~mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~ 354 (439)
-.+||=|.-|..|-+.+-.+.-..+.+-..|+..+.
T Consensus 335 ~~~lg~l~~r~sy~qnl~~HSv~VA~lA~~lA~~lg 370 (535)
T PRK00106 335 IKIMGRLQFRTSYGQNVLRHSVEVGKLAGILAGELG 370 (535)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 467888888888855555555555555555555554
No 404
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.64 E-value=1.1e+02 Score=28.41 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 013627 169 AELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 169 eELEkEnkELr~ELa~aeaQI~s 191 (439)
.+||+++.+|.+||..++..+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544433
No 405
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=37.58 E-value=2.6e+02 Score=26.85 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+--+|++-+.-+..|..--..|++.++.....|+.|..++..|.+++..+..++
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444444555555555555555555555555555544443
No 406
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=37.52 E-value=1.5e+02 Score=25.84 Aligned_cols=59 Identities=8% Similarity=-0.057 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFAL-------------KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaL-------------kkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
....++=.++.++.+.+-.|..+...- ...+..+++.+.+|++++.+|+-+.+.++..+
T Consensus 30 ~sv~evA~e~gIs~~tl~~W~r~y~~~~~~~~~~~~~~~~~~~~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 30 MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999998876531 12344455666667777777776666666544
No 407
>PHA03395 p10 fibrous body protein; Provisional
Probab=37.52 E-value=1.1e+02 Score=26.60 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcc--ccCHHHHHHHHHHHHHHhhhh
Q 013627 331 HLLAIKADIETKGGFINSLIQKVLAAA--YTNIEDLLEFVDWLDKELSSL 378 (439)
Q Consensus 331 ~llaIk~DVe~~~~~I~~L~~~i~~~~--~~d~~evv~Fv~wld~eLs~L 378 (439)
-|++|.+||....+=+..|-..|.... +.|++++-.+.+-+...|..+
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti 54 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTI 54 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHH
Confidence 478999999998888888888887655 678888888877777766555
No 408
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=37.50 E-value=48 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.|+..|++.|..|.+||.+|+.+|.++++..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666677777777777777777777665
No 409
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=37.05 E-value=2.3e+02 Score=29.67 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=47.8
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-----------------HHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN-----------AE-----------------LEKQNKK 177 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerN-----------eE-----------------LEkEnkE 177 (439)
...++..+..|=..|+.....+.+|+..+.++..|.+.+...- .+ |--||+|
T Consensus 121 ~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRy 200 (319)
T PF09789_consen 121 ARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRY 200 (319)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence 3444577888888888888888888888877776666543332 22 2236888
Q ss_pred HHHHHHHHHHHHhhhchh
Q 013627 178 LVEDLVAAEAKIASLSSR 195 (439)
Q Consensus 178 Lr~ELa~aeaQI~sL~s~ 195 (439)
|+++|.+++.+...++..
T Consensus 201 L~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 201 LKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777666653
No 410
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=37.04 E-value=11 Score=32.98 Aligned_cols=8 Identities=50% Similarity=0.742 Sum_probs=5.7
Q ss_pred hHHhHHhh
Q 013627 288 AQLYHSLT 295 (439)
Q Consensus 288 veLY~sLk 295 (439)
..||++|-
T Consensus 64 lkLYrsLG 71 (118)
T PF08286_consen 64 LKLYRSLG 71 (118)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 56777776
No 411
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=36.97 E-value=1.7e+02 Score=24.70 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
-.+.+++..|...+.++..+........ -...+.....+|+.-+..++.+|..++..|.
T Consensus 5 ~v~~ev~~sl~~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 5 VVKDEVQSSLDRLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888776544333 2223333444555555555555555555553
No 412
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=36.76 E-value=3.2e+02 Score=28.59 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALK 158 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLk 158 (439)
...|++||...+.+...|+++...|.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677777777777777776666555
No 413
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.71 E-value=1.8e+02 Score=28.42 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 013627 170 ELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 170 ELEkEnkELr~ELa~aeaQI~sL 192 (439)
++|+++.+++.+++++++++..|
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554333
No 414
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.64 E-value=2.2e+02 Score=28.94 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+..+.+++.-..|.++|-++.=.+..+..++
T Consensus 115 ~~~e~L~~~~e~l~r~nl~~~p~l~el~~~~ 145 (244)
T KOG3270|consen 115 KIQEKLVKSVEKLARENLEKEPALVELRNQA 145 (244)
T ss_pred HHHHHHHHHHHHhcccchhhccchHHHHhhh
Confidence 4555555555555555554444444444444
No 415
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=36.63 E-value=1.1e+02 Score=31.26 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=33.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+..+++..|+.++..|++|+..++.+++.++.++....+=+...-..+
T Consensus 29 l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 29 LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888877777777777777666666555555554
No 416
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=36.31 E-value=1.6e+02 Score=30.40 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=41.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
|-+-|...|.+++.+..+...|++.+.-|+.++.++..++.+.+..+..++..+
T Consensus 62 ~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~ 115 (389)
T PF06216_consen 62 ISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPV 115 (389)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 467777788888888888888888888888888777777777777777777655
No 417
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.19 E-value=2.5e+02 Score=33.90 Aligned_cols=44 Identities=32% Similarity=0.271 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
.+.|+.+++.+..++..++.+...++.++..|..++..+++.+.
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555555555553
No 418
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.16 E-value=1.2e+02 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~ae 186 (439)
+++-.++..+..|.+++++++..|..++
T Consensus 43 keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 43 KENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 419
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.10 E-value=1.2e+02 Score=31.43 Aligned_cols=56 Identities=25% Similarity=0.269 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE-------LEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE-------LEkEnkELr~ELa~aea 187 (439)
.+++|+..|+-..++.++-+-+|+.|..-+.+.++..++ |.+||..|-.....++.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 355566666666666666666666666555554433332 45566655555544443
No 420
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=36.08 E-value=2.6e+02 Score=29.90 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~aeaQ 188 (439)
++++..+|..++++|+.++..++.+
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433
No 421
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.01 E-value=2.1e+02 Score=31.40 Aligned_cols=40 Identities=35% Similarity=0.296 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
++..+++.+..|-.++-++..+|+++...|..++...+..
T Consensus 180 ~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 180 DLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666555666666666666555555555554443
No 422
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.95 E-value=62 Score=32.17 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=28.3
Q ss_pred ccccCCCCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 013627 115 RIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALK 158 (439)
Q Consensus 115 ~~~~~~~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLk 158 (439)
+...+|---+++++ .+|.+++.+++...+.|..|..+|..++
T Consensus 82 rv~e~nlre~e~~~--q~k~Eiersi~~a~~kie~lkkql~eaK 123 (222)
T KOG3215|consen 82 RVIEMNLREIENLV--QKKLEIERSIQKARNKIELLKKQLHEAK 123 (222)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445554 7888888888888888888877777554
No 423
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.85 E-value=2.1e+02 Score=28.62 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
+......|+++|+..+..+.+|+.++..+..++++++.+...
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668899999999999999999999999999998887754
No 424
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=35.82 E-value=1.1e+02 Score=27.62 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
......+++++|+..++.+++|+.++..+..+++++..+...
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~ 50 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEK 50 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777777777776655544
No 425
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.74 E-value=1.5e+02 Score=25.38 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
..++-|.++++..++.++.|+.++..+..++..++....+
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666665555544433
No 426
>PRK14154 heat shock protein GrpE; Provisional
Probab=35.73 E-value=1.8e+02 Score=28.68 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
..|+++|+..+..+.+|+.++..+..++++++.+...-..
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e 94 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKA 94 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888999999999999999999998877765443
No 427
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=35.62 E-value=6e+02 Score=29.18 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=5.4
Q ss_pred hhhccccccc
Q 013627 219 KLEHSIVMTD 228 (439)
Q Consensus 219 ~le~s~~~~~ 228 (439)
+||++.-+..
T Consensus 429 klE~dl~~~~ 438 (629)
T KOG0963|consen 429 KLEQDLLKVQ 438 (629)
T ss_pred HHHhhHhhcc
Confidence 4666655444
No 428
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.49 E-value=3.2e+02 Score=25.52 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.5
Q ss_pred hhhHHHHH
Q 013627 207 PKFKDVQK 214 (439)
Q Consensus 207 ~~~KkIQk 214 (439)
.+|.-|+-
T Consensus 150 ~K~~~lr~ 157 (177)
T PF07798_consen 150 LKWDTLRW 157 (177)
T ss_pred HHHHHHHH
Confidence 34444443
No 429
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=35.48 E-value=2.4e+02 Score=31.90 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+++.....+..-...+..+...||.+..+++.+...++..+..|.
T Consensus 367 ~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 367 AELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444445555555556655566666666665555444
No 430
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.40 E-value=2.4e+02 Score=33.16 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhchhh---
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK-----------QNKKLVEDLVAAEAKIASLSSRE--- 196 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk-----------EnkELr~ELa~aeaQI~sL~s~~--- 196 (439)
+--+|....++..++...+|-.-++.++.|+..+.....+.+. |..+++-+|..+-.++..++-..
T Consensus 441 ~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~s 520 (861)
T PF15254_consen 441 NQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEAS 520 (861)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456666666666666666666666666666665555444322 34444444444444443222111
Q ss_pred ------------hhhhhhccCChhhHHHHHHHHhhhh
Q 013627 197 ------------QREAVGEYQSPKFKDVQKLIANKLE 221 (439)
Q Consensus 197 ------------~~~~~~E~qs~~~KkIQklia~~le 221 (439)
+++..++|=--+.+.+|.+++..|-
T Consensus 521 ekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 521 EKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222333333366777777777543
No 431
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=35.34 E-value=4.1e+02 Score=25.48 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=34.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
-.+++.+.++|+.+|..+.+|+.-|.+-+.-.|+...+|+.+|
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566777888999999999998888888888888777777664
No 432
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=35.03 E-value=2.6e+02 Score=27.11 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 128 ~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...--..+|+.+|....+...+++..|......+..+..+-+.+...+.+.+.++.....++..+.
T Consensus 75 ~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~ 140 (240)
T PF12795_consen 75 LANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLP 140 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 333445666666666666666666666666666666666666666666666666666666555443
No 433
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=34.99 E-value=2.8e+02 Score=27.39 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHh
Q 013627 141 MLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIAN 218 (439)
Q Consensus 141 e~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~ 218 (439)
...+..+...+.++.++..++..++.....++.++..++.++..++.++...+. .+++.++|...
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~-------------~~~r~~~L~~~ 140 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAEL-------------DLRRRVPLFKK 140 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHC
No 434
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.78 E-value=1.5e+02 Score=27.54 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 157 LkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
|.++...|.++.+.|..||..++.+++..+..+
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555544
No 435
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=34.65 E-value=2.7e+02 Score=28.04 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013627 171 LEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 171 LEkEnkELr~ELa~aeaQ 188 (439)
||.++++|+.+++.++.+
T Consensus 197 le~~k~~Le~~ia~~k~K 214 (259)
T KOG4001|consen 197 LEDKKKELELKIAQLKKK 214 (259)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 333333333333333333
No 436
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=34.60 E-value=3.8e+02 Score=28.74 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHhHHHH---HHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLV---KDLQSEVFAL 157 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlI---keLqSELeaL 157 (439)
.+|..-++|.-.+++.+. +.|.++|...
T Consensus 88 r~i~es~~e~q~e~~qL~~qnqkL~nqL~~~ 118 (401)
T PF06785_consen 88 RKIRESVEERQQESEQLQSQNQKLKNQLFHV 118 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455555555554444443 3444454433
No 437
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=34.46 E-value=2.6e+02 Score=27.06 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
..+.-+...++-+...+....+++.++.+|+.++...+
T Consensus 136 ~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 136 IYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344444455555555555555555444
No 438
>PRK01156 chromosome segregation protein; Provisional
Probab=34.34 E-value=1.8e+02 Score=33.29 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.1
Q ss_pred HHHHHH
Q 013627 178 LVEDLV 183 (439)
Q Consensus 178 Lr~ELa 183 (439)
+.+++.
T Consensus 700 l~~~i~ 705 (895)
T PRK01156 700 LESTIE 705 (895)
T ss_pred HHHHHH
Confidence 333333
No 439
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=34.17 E-value=2.9e+02 Score=23.33 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+...++.+++.+..+...++...+++|.++...-+++...+.+|..|.
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE 52 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELE 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777765555555555555555444
No 440
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.10 E-value=2.5e+02 Score=26.55 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=10.9
Q ss_pred CCchhhHHhHHhhhhcc
Q 013627 283 KTPSFAQLYHSLTKQVE 299 (439)
Q Consensus 283 rsP~vveLY~sLk~K~~ 299 (439)
..|.--.|=.|+.....
T Consensus 125 PwP~Ed~mR~G~L~~~~ 141 (188)
T PF10018_consen 125 PWPQEDQMRRGMLAQLQ 141 (188)
T ss_pred CCCCHHHHHHhHHHhhh
Confidence 34666777777766664
No 441
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=34.00 E-value=1.2e+02 Score=28.09 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=26.0
Q ss_pred HHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 139 KLMLSENLVKDLQSEVFAL--KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaL--kkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+......++.+++.|+.++ +.|+.++- .|+|++..+..|++.++.+..+-+
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwa----Kl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWA----KLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHH----HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455444432 24444432 356666667777777666654333
No 442
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=33.85 E-value=1.1e+02 Score=26.22 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr 179 (439)
+...++..++.|...+..++..|..|..++..++
T Consensus 74 l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 74 LAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555555555666655555544
No 443
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=33.80 E-value=2.7e+02 Score=27.07 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFAL 157 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaL 157 (439)
.+|+..|-..++++..++.+|.+|
T Consensus 50 ~~Lq~qLlq~~k~~~~l~~eLq~l 73 (206)
T PF14988_consen 50 SELQDQLLQKEKEQAKLQQELQAL 73 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444433
No 444
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=33.79 E-value=1.3e+02 Score=31.42 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
.+++.++..+..+....+.++.++.++++++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444455555555554444
No 445
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=33.73 E-value=1.3e+02 Score=32.70 Aligned_cols=9 Identities=44% Similarity=0.604 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 013627 135 EFEEKLMLS 143 (439)
Q Consensus 135 eLqEkLe~s 143 (439)
++++.++..
T Consensus 218 e~~~~l~l~ 226 (511)
T PF09787_consen 218 ELQEQLELL 226 (511)
T ss_pred HHHHHHHHH
Confidence 333444433
No 446
>PRK15396 murein lipoprotein; Provisional
Probab=33.68 E-value=2.4e+02 Score=23.81 Aligned_cols=7 Identities=43% Similarity=0.529 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013627 152 SEVFALK 158 (439)
Q Consensus 152 SELeaLk 158 (439)
+++..|+
T Consensus 32 sqV~~L~ 38 (78)
T PRK15396 32 SDVQTLN 38 (78)
T ss_pred HHHHHHH
Confidence 3333333
No 447
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=33.67 E-value=87 Score=34.27 Aligned_cols=10 Identities=60% Similarity=0.820 Sum_probs=4.8
Q ss_pred HHHHHHHhhh
Q 013627 398 MREAAVEYRD 407 (439)
Q Consensus 398 lReAa~~Y~~ 407 (439)
+|..|++|++
T Consensus 494 sRRiaveysd 503 (518)
T KOG1830|consen 494 SRRIAVEYSD 503 (518)
T ss_pred HHHHHHHhcc
Confidence 3444555544
No 448
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=33.66 E-value=82 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+..+++.|.+|+.+++.|+.+|+......
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 449
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.65 E-value=1.1e+02 Score=32.23 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAE---LEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeE---LEkEnkELr~ELa~aeaQI 189 (439)
.|+.++..+.+++.++.+..++ .++++++++.++++++..+
T Consensus 246 ~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~ 289 (406)
T PF02388_consen 246 SLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRI 289 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHH
Confidence 4444444444444444333222 2234444555555444444
No 450
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=33.61 E-value=1.6e+02 Score=30.66 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCCh
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSP 207 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~ 207 (439)
...-+|..+..++...+.....|+.++++|+.++..++.+|....+. ..++.-++.
T Consensus 135 ~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgk---da~gk~~tR 190 (308)
T PF06717_consen 135 DFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGK---DANGKQLTR 190 (308)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCCCcccH
Confidence 44456667777777777777888888888888888888888877763 334444443
No 451
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.55 E-value=3.8e+02 Score=25.34 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 160 ElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
++..|+.....|+.+++.+-.+|..++..+
T Consensus 30 ~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L 59 (188)
T PF10018_consen 30 RIQQLRAEIEELDEQIRDILKQLKEARKEL 59 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444
No 452
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.46 E-value=1.6e+02 Score=32.34 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=31.7
Q ss_pred ccCHHHHHHHHHHHHHHhhhhhHHHH-HHhhcCCCcccHHHHHHHHHHhh
Q 013627 358 YTNIEDLLEFVDWLDKELSSLADERA-VLKHFKWPEKKADAMREAAVEYR 406 (439)
Q Consensus 358 ~~d~~evv~Fv~wld~eLs~L~DEr~-VLk~F~wPekK~dalReAa~~Y~ 406 (439)
-.++..+..|+.++...+..|..|.. |=..|...+.-.+..|.......
T Consensus 309 ek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~ 358 (569)
T PRK04778 309 EKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLE 358 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHH
Confidence 36677788888888888888888866 44445666555555554443333
No 453
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=33.45 E-value=1.7e+02 Score=28.20 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 160 ElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
.+..+++.+..+++.+++..+++...+.++..|
T Consensus 76 ~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 76 RLRKSQEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444333
No 454
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.34 E-value=9.9e+02 Score=29.33 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=56.0
Q ss_pred hhhhhHHHHHhcchh-hH--HHHH-HHHHhhhhh-------------hHHHHHHHHhccccC----HHHHHHHHHHHHHH
Q 013627 316 IAHSSIVGEIQNRSA-HL--LAIK-ADIETKGGF-------------INSLIQKVLAAAYTN----IEDLLEFVDWLDKE 374 (439)
Q Consensus 316 ~a~~~mIgEIenRSa-~l--laIk-~DVe~~~~~-------------I~~L~~~i~~~~~~d----~~evv~Fv~wld~e 374 (439)
.+..-+-.||++++- |. +.|+ .+|+.|..+ +...-.++...+..+ +.++.+-++|++..
T Consensus 338 ~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~s 417 (1141)
T KOG0018|consen 338 GAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKES 417 (1141)
T ss_pred HHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456777888888777 43 2233 333333222 112222333334444 78888888999998
Q ss_pred hhhhhHHHHHHhhcCCCcccHHHHHHHHHHhhhHhhHHHHhccccCCC
Q 013627 375 LSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDT 422 (439)
Q Consensus 375 Ls~L~DEr~VLk~F~wPekK~dalReAa~~Y~~L~~l~~e~~~~~d~p 422 (439)
++.+...++.|+.. --..-|.-+..-.+++.|+.....-+..|
T Consensus 418 ver~~~~~~~L~~~-----i~s~~~~~~e~~~d~~~l~~~~~~~~~~~ 460 (1141)
T KOG0018|consen 418 VERLDKRRNKLAAK-----ITSLSRSYEELKHDLDSLESLVSSAEEEP 460 (1141)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHhhcHHHHHHHHhhhhhhH
Confidence 88888887766543 11112333334445566665555555444
No 455
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.25 E-value=5.5e+02 Score=26.92 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQ---------SEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLq---------SELeaLkkElekLqerNeELE 172 (439)
...+-..=|+..|.+|=.|- .+|....+++......|....
T Consensus 91 ~l~~yNdYLE~vEdii~nL~~~~d~~~te~~l~~y~~~n~~~I~~n~~~~ 140 (309)
T TIGR00570 91 SLREYNDYLEEVEDIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKS 140 (309)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444455555665554443 444444444444444444433
No 456
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.18 E-value=3.5e+02 Score=24.09 Aligned_cols=64 Identities=30% Similarity=0.275 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHh
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIAN 218 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~ 218 (439)
+...|+.+..-|++=+-.-+..+..|..+++.-.+.|..++.++.+|.=++.. +.|+|..|-..
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~Q---------L~kRV~~LQ~E 69 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQ---------LTKRVEVLQEE 69 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 45567777777777777777778888888888888888888888777765542 66777666555
No 457
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.91 E-value=2e+02 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
+.+-++..++-+..++.++..+.+++..+..+...
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 119 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITE 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333444444444444444333333333333
No 458
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.82 E-value=4e+02 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 162 VKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 162 ekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..|..+-.++-..|-+++..+..++.+|..++.
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555556666666655553
No 459
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.82 E-value=1.1e+02 Score=31.26 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.+|+.+|..|+-+++.++. +.+++.++.....++......+
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~ 99 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARL 99 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666666666666655 5555555444444444333333
No 460
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.77 E-value=1.8e+02 Score=32.66 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=4.0
Q ss_pred hHHhHHhhh
Q 013627 288 AQLYHSLTK 296 (439)
Q Consensus 288 veLY~sLk~ 296 (439)
+++|..=+.
T Consensus 408 ~n~~~aETe 416 (596)
T KOG4360|consen 408 CNMYGAETE 416 (596)
T ss_pred HHHhhhhhh
Confidence 445544333
No 461
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=32.76 E-value=2.4e+02 Score=29.08 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=7.1
Q ss_pred CCccccccCcccccc
Q 013627 12 NMSHSTAATTTFRLR 26 (439)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (439)
|-.++|.+|+ +-+|
T Consensus 80 n~~~tttptp-~q~~ 93 (279)
T KOG0837|consen 80 NGYATTTPTP-MQYR 93 (279)
T ss_pred cceeeecCCC-cccc
Confidence 5555555555 4443
No 462
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.53 E-value=3.3e+02 Score=30.88 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHhc
Q 013627 335 IKADIETKGGFINSLIQKVLAA 356 (439)
Q Consensus 335 Ik~DVe~~~~~I~~L~~~i~~~ 356 (439)
.++++.....-|.+++..++..
T Consensus 444 Lq~~~~~~~~~i~E~~~~l~~~ 465 (581)
T KOG0995|consen 444 LQEHFSNKASTIEEKIQILGEI 465 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666543
No 463
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=32.50 E-value=40 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeEL 171 (439)
...|...++.....+..|+.++..|..++..+......|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l 65 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESL 65 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 334444444444444444444444444444443333333
No 464
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.46 E-value=3.6e+02 Score=30.81 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.|...+++++.++.--..|-+.+++..++.+.|++
T Consensus 603 ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~ 637 (741)
T KOG4460|consen 603 DLSYCREERKSLREMAERLADRYEEAKEKQEDLMN 637 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444443333444444444444444444
No 465
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.36 E-value=4.4e+02 Score=24.93 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
|.++=+=-+.+..++..++.+|..++.++.......+.|+..-...+..|...-..+
T Consensus 15 K~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 15 KEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333344445555566666666666666666666666665555555444443333
No 466
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.31 E-value=3.4e+02 Score=31.42 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCC
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQS 206 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs 206 (439)
++++++.+.-++-+......+.+|=.+|+..+.+++...+..+.+..|..+++.+|.....++..-+.....+.-.|.+.
T Consensus 493 Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~ 572 (771)
T TIGR01069 493 GIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572 (771)
T ss_pred CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHH
Q 013627 207 PKFKDVQKL 215 (439)
Q Consensus 207 ~~~KkIQkl 215 (439)
.+-+--.++
T Consensus 573 ~~~~a~~~~ 581 (771)
T TIGR01069 573 ALKALKKEV 581 (771)
T ss_pred HHHHHHHHH
No 467
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.30 E-value=2.6e+02 Score=25.04 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 141 MLSENLVKDLQSEVFALK----AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 141 e~sEnlIkeLqSELeaLk----kElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
++-.+....+++.|..|. +||+..++-+..-..++..|.+.+..++++++
T Consensus 37 evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 37 EVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 468
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.25 E-value=2.3e+02 Score=33.03 Aligned_cols=63 Identities=25% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~ 195 (439)
+..|++.|-..+..+.-|++++++|+.+++......+.....+..++.+...+...|..+..+
T Consensus 324 i~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~ 386 (775)
T PF10174_consen 324 IEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDM 386 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.18 E-value=2.4e+02 Score=33.33 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
+...+..|+-.+...+-+++.++.+++.+.+|.+.-.+..+.+..+.++|+..+....-++..+
T Consensus 526 ~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 526 TTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.15 E-value=2.6e+02 Score=33.69 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDV 212 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkI 212 (439)
.+.++..|....+.+++++.+|....+++..+......++.+.+..+.++..+..+..++. ........++.....+.+
T Consensus 609 l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l 687 (1201)
T PF12128_consen 609 LEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLK-QEIEEAKEERKEQIEEQL 687 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 013627 213 QKL 215 (439)
Q Consensus 213 Qkl 215 (439)
..+
T Consensus 688 ~~l 690 (1201)
T PF12128_consen 688 NEL 690 (1201)
T ss_pred HHH
No 471
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.98 E-value=1.7e+02 Score=23.19 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALK-------AEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLk-------kElekLqerNeELEkEnkELr~ELa~ae 186 (439)
+..+..|+-+|+-.+..+..++..|..-. +-++.-+....+++.++..|...|..+.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 472
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=31.97 E-value=4.6e+02 Score=25.07 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccC
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQ 205 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~q 205 (439)
+|+..+...-+.-+++......+.|..-.....+|...+.+..++..++...|-+.|..+-.+...++
T Consensus 79 ~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r------------ 146 (159)
T PF04949_consen 79 ADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR------------ 146 (159)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred ChhhHHHHHH
Q 013627 206 SPKFKDVQKL 215 (439)
Q Consensus 206 s~~~KkIQkl 215 (439)
.||+.+|
T Consensus 147 ---mKKLEEL 153 (159)
T PF04949_consen 147 ---MKKLEEL 153 (159)
T ss_pred ---HHHHHHH
No 473
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.93 E-value=1.8e+02 Score=28.62 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNK---KLVEDLVAAEAKIA 190 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnk---ELr~ELa~aeaQI~ 190 (439)
...-+.-..+..+.+|++.|++++.+|+.++. +++.|..+++..+.
T Consensus 62 ~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 62 SGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 474
>PRK14148 heat shock protein GrpE; Provisional
Probab=31.68 E-value=2.3e+02 Score=27.66 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 121 PGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKK 177 (439)
Q Consensus 121 ~~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkE 177 (439)
...+++-...+....|+++|+..+..+.+|+.++..+..++++++.+...=..+...
T Consensus 30 ~~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~ 86 (195)
T PRK14148 30 SGALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK 86 (195)
T ss_pred hhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=31.62 E-value=2.6e+02 Score=25.87 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s 191 (439)
+.+.....+.|+..- +-.++..+...-..+..|+.-...++.++++|+..++.+.+.+..
T Consensus 77 ~~i~~~~s~~l~~~~--~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~ 136 (146)
T PF08702_consen 77 DNIYNQYSKSLRKMI--IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKE 136 (146)
T ss_dssp HHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred ccHHHHHHHHHHHHH--HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
No 476
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.48 E-value=3.5e+02 Score=25.62 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
++.+..+=....+++-+|..++++-..|+.+-++||+..+.|..-+.+++.-+..+.
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~ 132 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIG 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.45 E-value=3e+02 Score=30.73 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
++-|+.-.+.++..--+.++...++...+..|-..+..+.+..|++..-+..+|..+...|..|.
T Consensus 411 E~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 411 EQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=31.35 E-value=4.5e+02 Score=27.07 Aligned_cols=84 Identities=27% Similarity=0.246 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhh
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~ 209 (439)
..-...++-+.+........+++++.....-...|....-+|+++|+.+..+.......-...+. ...++=....
T Consensus 42 ~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~-----el~~kFq~~L 116 (309)
T PF09728_consen 42 QKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRK-----ELSEKFQATL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_pred HHHHHHHHh
Q 013627 210 KDVQKLIAN 218 (439)
Q Consensus 210 KkIQklia~ 218 (439)
++|+..+..
T Consensus 117 ~dIq~~~ee 125 (309)
T PF09728_consen 117 KDIQAQMEE 125 (309)
T ss_pred HHHHHHHHh
No 479
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.14 E-value=1.5e+02 Score=25.74 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkEL 178 (439)
++.+.+|+.++..+..|++.|+.+.+--..|.++|
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=31.12 E-value=2.5e+02 Score=25.15 Aligned_cols=57 Identities=30% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 137 EEKLMLSENLVK----------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 137 qEkLe~sEnlIk----------eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
++||+++..++. ++++++..|+.++-.+..+.-+||-+.......++.+......+.
T Consensus 3 EeKLqISKeLVDLQIe~~rL~Eq~EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~ 69 (108)
T PF14739_consen 3 EEKLQISKELVDLQIETNRLREQHEAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQ 69 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHH
No 481
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=31.07 E-value=44 Score=32.77 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCCCCCc
Q 013627 242 PKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPP 275 (439)
Q Consensus 242 ~p~p~p~~~~~~~k~~~~~~~ppppppPpPp~p~ 275 (439)
.+.|.+..--.+-....++..|.|||+||||+.+
T Consensus 163 a~~p~~~~k~~~~~a~~~~~~~~~pp~pppp~~p 196 (225)
T KOG3397|consen 163 ASNPSFLSKIAQPSASSTVSASAPPPPPPPPMAP 196 (225)
T ss_pred cCCCCchhhcCCcccccccCCCCCCCcccCCCCc
No 482
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.06 E-value=3.1e+02 Score=23.16 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=0.0
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa 183 (439)
++...+--..|++.|+.+=.-|..-+.+ .+..++..++.....|+.+|..|+.+++
T Consensus 44 ~~Ls~~eL~~LE~~Le~aL~~VR~rK~~--~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 44 ESLSLKELQQLEQQLESALKRVRSRKDQ--LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred cccchHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 483
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=31.06 E-value=1.9e+02 Score=26.86 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHhHHhhhhcccCCCCCCCCCCCCchhhhhhh
Q 013627 241 EPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSS 320 (439)
Q Consensus 241 p~p~p~p~~~~~~~k~~~~~~~ppppppPpPp~p~~g~~~~~rsP~vveLY~sLk~K~~~~~~~~~~~~~~~~~~~a~~~ 320 (439)
|||+..|+.. .+++||.+....||.........-.|.....+..+.. ....
T Consensus 3 Ppp~~~P~s~---------~~~~Pp~~~~~~PP~~~~~~~~~~~p~~~~~i~~~~~--------------------~L~~ 53 (157)
T PF07304_consen 3 PPPPSLPPSQ---------APPPPPQPSGPVPPASPPVDPSSIPPEDEQPIEEVLR--------------------ELQR 53 (157)
T ss_dssp --------------------------------------------------HHHHHH--------------------HHHH
T ss_pred cCcCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHHHH--------------------HHHH
Q ss_pred HHHHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHh--ccccCHHHHHHHHHHHHHHhhhhhHHHHH
Q 013627 321 IVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLA--AAYTNIEDLLEFVDWLDKELSSLADERAV 384 (439)
Q Consensus 321 mIgEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~--~~~~d~~evv~Fv~wld~eLs~L~DEr~V 384 (439)
++..+.+ .|.-++-.|+++. |+.|-+.+++ .+-.-++.|..++.-|+..==.-+++-+|
T Consensus 54 v~~~~~~--~~~kr~~~D~~KR---L~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~ 114 (157)
T PF07304_consen 54 VLEACPP--SIKKRVVDDIEKR---LNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHV 114 (157)
T ss_dssp HHHHHHT--TS-HHHHHHHHHH---HHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHccc--ccchhHHHHHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
No 484
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=31.05 E-value=3.1e+02 Score=28.67 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhc
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk----EnkELr~ELa~aeaQI~sL~ 193 (439)
+.|++.....-..+..|++....+...+..|.+....++. ....+++.+..++..|..|+
T Consensus 325 ~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 325 KSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 485
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.01 E-value=3.1e+02 Score=24.37 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChh
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK-----QNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPK 208 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk-----EnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~ 208 (439)
....+-....+...+.++.++..+..++..+.+....... +...+..++.....++..+...-+.+-..+++. .
T Consensus 32 ~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~-~ 110 (158)
T PF03938_consen 32 PAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQE-L 110 (158)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_pred hHHHHHHHHhhhh
Q 013627 209 FKDVQKLIANKLE 221 (439)
Q Consensus 209 ~KkIQklia~~le 221 (439)
+..|+.-|..-++
T Consensus 111 ~~~i~~~i~~~v~ 123 (158)
T PF03938_consen 111 LQPIQKKINKAVE 123 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 486
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=30.95 E-value=3.7e+02 Score=24.05 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhc
Q 013627 135 EFEEKLM--LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGE 203 (439)
Q Consensus 135 eLqEkLe--~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E 203 (439)
+++.+|. ..+..|+.|...+..+-+++..++.+.. .+...++.-...|.+++.+.-.+|
T Consensus 41 kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k----------~qgktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 41 KIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQK----------AQGKTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcc
No 487
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.85 E-value=56 Score=35.82 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred CCCCCCCccccccCCCCCCCCCC------CCCCCCCCCCCcccccCCCCCc
Q 013627 241 EPKIPIRNAAGVERKPQAYPSMP------APLPPPPPPRPPARAAATQKTP 285 (439)
Q Consensus 241 p~p~p~p~~~~~~~k~~~~~~~p------pppppPpPp~p~~g~~~~~rsP 285 (439)
|+|+...+....|...|...++| +|||||+||+|-.+.-..|.-+
T Consensus 431 ~hP~~~~p~~~~g~~~P~~~mpp~~P~~~~pppP~~pp~p~~~~~q~q~~~ 481 (483)
T KOG2236|consen 431 PHPPESNPPANFGQANPFNQMPPAYPHQQSPPPPPPPPPPNSPMNQMQNPS 481 (483)
T ss_pred CCCCCCCCcccccccCccccCCCCCccccCCCCCCCCCCCCChhhcccCCC
No 488
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=30.79 E-value=88 Score=33.47 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHhhhhcccccccccccCC-------CCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCcccccCCCCCc
Q 013627 215 LIANKLEHSIVMTDAISETS-------INTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTP 285 (439)
Q Consensus 215 lia~~le~s~~~~~~~~~~~-------~~~~~~p~p~p~p~~~~~~~k~~~~~~~ppppppPpPp~p~~g~~~~~rsP 285 (439)
+||.+.-+.+..+...++.- |-+++++++++.++.. .+|+|.+|+|.++.+-.-....+|+|
T Consensus 46 ~~w~~~~~~~~~~~~~~~~~v~~~t~~f~p~~~~~~~~~~p~~---------~~p~p~~~~~~~~~~~~~l~~~~~~p 114 (376)
T PRK13855 46 LIWLGGRSKKENEPAPPSTMIATNTKPFHPAPIDVPPDPPAAQ---------EAVQPTAPPSAQSEPERNEPRPEETP 114 (376)
T ss_pred HHHhccCCCcccCCCCCCcceecccCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCccccccccccCc
No 489
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=30.76 E-value=2.4e+02 Score=30.12 Aligned_cols=86 Identities=21% Similarity=0.161 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQS-------EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQRE 199 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqS-------ELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~ 199 (439)
+.-|+.-.+++|+.+.+.=+..+|-+ +++-|+.++..+.+++++--+|+.++..++.+.+..|..|.. .-.
T Consensus 115 e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~--~~~ 192 (405)
T KOG2010|consen 115 ELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH--KME 192 (405)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q ss_pred hhhccCChhhHHHHH
Q 013627 200 AVGEYQSPKFKDVQK 214 (439)
Q Consensus 200 ~~~E~qs~~~KkIQk 214 (439)
..+|--+-.-+-|++
T Consensus 193 elKe~l~QRdeliee 207 (405)
T KOG2010|consen 193 ELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHH
No 490
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=30.71 E-value=2.7e+02 Score=31.88 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCCh--h
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSP--K 208 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~--~ 208 (439)
...+.|+.......+.++.|+.++..++.++..+......+.+++.+....+.....++.++..+..+.. .|..-. |
T Consensus 227 ~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL 305 (670)
T KOG0239|consen 227 RNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKL 305 (670)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_pred hHHHHHH
Q 013627 209 FKDVQKL 215 (439)
Q Consensus 209 ~KkIQkl 215 (439)
+-.|++|
T Consensus 306 ~N~i~eL 312 (670)
T KOG0239|consen 306 HNEILEL 312 (670)
T ss_pred HHHHHHh
No 491
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=30.65 E-value=2.9e+02 Score=25.85 Aligned_cols=58 Identities=22% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEF-EEKLMLSENL---VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 131 ~~k~eL-qEkLe~sEnl---IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+||..| +-..++.+-. ...++.+++..+++....+...++|+.+-++.+.+.+.+..+
T Consensus 48 siK~~l~e~~~~~l~~~~~~~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~ 109 (157)
T PF14235_consen 48 SIKQHLAELAADLLELELAARAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHH 109 (157)
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
No 492
>PRK14148 heat shock protein GrpE; Provisional
Probab=30.64 E-value=3.5e+02 Score=26.37 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHH
Q 013627 134 KEFEEKLMLS--ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKD 211 (439)
Q Consensus 134 ~eLqEkLe~s--EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~Kk 211 (439)
.+-.+.+++. +..+..|+.++..+.+++..++++...+..+...++....+-..++.....
T Consensus 27 ~~~~~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~----------------- 89 (195)
T PRK14148 27 ESASGALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGI----------------- 89 (195)
T ss_pred hhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q ss_pred HHHHHHhhhh
Q 013627 212 VQKLIANKLE 221 (439)
Q Consensus 212 IQklia~~le 221 (439)
.+++.+.|.
T Consensus 90 -~~~~~~LLp 98 (195)
T PRK14148 90 -EKFAKELLP 98 (195)
T ss_pred -HHHHHHHhh
No 493
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.57 E-value=1.9e+02 Score=30.34 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..++++...+....+-+.+++..+..+...+..+.+....++++++.+...|..++..+
T Consensus 130 ~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 130 NLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 494
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.50 E-value=3.5e+02 Score=23.16 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS---LNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqe---rNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
.+.++.+........+++|..+-..+...+.++-+ +...||.=..+|.+-...++.++.++
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 495
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=30.46 E-value=2.9e+02 Score=29.26 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQS------------------------------------LNAELEKQ 174 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqe------------------------------------rNeELEkE 174 (439)
...+.+...+......+..++.++..++.....+++ ...+++.+
T Consensus 165 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (457)
T TIGR01000 165 TQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQ 244 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 013627 175 NKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 175 nkELr~ELa~aeaQI~sL 192 (439)
+..+++++..++.++..+
T Consensus 245 i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 245 IDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHhhc
No 496
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=30.34 E-value=1e+02 Score=32.42 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEK-------QNKKLVEDLVAAEAKI 189 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEk-------EnkELr~ELa~aeaQI 189 (439)
++.+||++=..|.+.++.+++.|.-|++ |+..|.+.+..++.-|
T Consensus 1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai 51 (351)
T PF07058_consen 1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI 51 (351)
T ss_pred CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK14140 heat shock protein GrpE; Provisional
Probab=30.33 E-value=1.3e+02 Score=29.22 Aligned_cols=80 Identities=20% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLI 216 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQkli 216 (439)
.+--+.+++++.+-.-+-.+...++..+...+..|+.++.+|+.++.++.+.+.+++.+..++-..-+.....+-+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LL 94 (191)
T PRK14140 15 TEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLL 94 (191)
T ss_pred hhHHhhcccchhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=30.30 E-value=3.3e+02 Score=28.89 Aligned_cols=85 Identities=22% Similarity=0.219 Sum_probs=0.0
Q ss_pred cccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 013627 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK-----------------QNKKLVEDLVAAE 186 (439)
Q Consensus 124 ~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk-----------------EnkELr~ELa~ae 186 (439)
|-||+ -+.-.+|.-++++-+.+.+-|..---+.-.|+++|.+...+||. ++.+|.++...++
T Consensus 1 iVdd~-QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 1 IVDDV-QNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred Cchhh-hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhchhhhhhhhhccCChhhHH
Q 013627 187 AKIASLSSREQREAVGEYQSPKFKD 211 (439)
Q Consensus 187 aQI~sL~s~~~~~~~~E~qs~~~Kk 211 (439)
.+++..+...|+-.. --...|||
T Consensus 80 RELARaKV~aNRVA~--vvANEWKD 102 (351)
T PF07058_consen 80 RELARAKVSANRVAT--VVANEWKD 102 (351)
T ss_pred HHHHHhhhhhhhhhh--hhcccccc
No 499
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.22 E-value=2.7e+02 Score=33.86 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCCccccCcchHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 013627 120 NPGKIEDGLMDKKKKEFEEKLMLSENLVKD--------LQSEVFALKAEFVK----AQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 120 ~~~~~~~~~d~~~k~eLqEkLe~sEnlIke--------LqSELeaLkkElek----LqerNeELEkEnkELr~ELa~a 185 (439)
|-++|.+|..-.++.+|.|+++-....+.. |+..++.+.+=+++ |.+++..+|..+++++.+|..+
T Consensus 353 N~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 353 NHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.09 E-value=4.3e+02 Score=27.00 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFK 210 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~K 210 (439)
..+.+|++-=+-.++.+..|+.++..+..++...++...-|-- |...+|.-..-||.+|..+.. .....|....-
T Consensus 67 ~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T---YkD~EYPvK~vqIa~L~rqlq--~lk~~qqdEld 141 (258)
T PF15397_consen 67 QAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST---YKDHEYPVKAVQIANLVRQLQ--QLKDSQQDELD 141 (258)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_pred HHHHHHHhhhhc
Q 013627 211 DVQKLIANKLEH 222 (439)
Q Consensus 211 kIQklia~~le~ 222 (439)
++.+++-..++.
T Consensus 142 el~e~~~~el~~ 153 (258)
T PF15397_consen 142 ELNEMRQMELAS 153 (258)
T ss_pred HHHHHHHHHHHH
Done!