Query 013627
Match_columns 439
No_of_seqs 167 out of 195
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 95.4 0.13 4.4E-06 42.3 10.1 58 131-188 6-63 (81)
2 3hnw_A Uncharacterized protein 94.7 0.18 6.1E-06 44.7 9.8 60 135-194 72-131 (138)
3 3hnw_A Uncharacterized protein 94.7 0.2 6.9E-06 44.3 10.0 70 121-190 63-134 (138)
4 3qh9_A Liprin-beta-2; coiled-c 93.0 0.49 1.7E-05 38.9 8.5 51 133-183 28-78 (81)
5 3mq9_A Bone marrow stromal ant 91.1 0.95 3.2E-05 45.4 9.9 17 149-165 401-417 (471)
6 4emc_A Monopolin complex subun 90.0 1.1 3.8E-05 42.0 8.6 57 132-188 7-63 (190)
7 3nmd_A CGMP dependent protein 89.4 1.4 4.8E-05 35.5 7.6 48 147-194 21-68 (72)
8 2q6q_A Spindle POLE BODY compo 89.2 3 0.0001 33.5 9.3 57 133-189 5-61 (74)
9 3a7p_A Autophagy protein 16; c 89.0 2.5 8.7E-05 38.3 9.9 24 169-192 99-122 (152)
10 3he5_A Synzip1; heterodimeric 88.4 2.6 8.8E-05 30.9 7.7 45 145-189 3-47 (49)
11 2jee_A YIIU; FTSZ, septum, coi 88.4 3.5 0.00012 33.9 9.4 55 140-194 8-62 (81)
12 3bas_A Myosin heavy chain, str 88.3 4.5 0.00015 33.0 10.2 64 131-194 21-84 (89)
13 2v71_A Nuclear distribution pr 88.2 2.5 8.5E-05 39.5 9.6 33 135-167 46-78 (189)
14 3cve_A Homer protein homolog 1 88.0 4 0.00014 32.8 9.4 59 135-193 4-62 (72)
15 3u59_A Tropomyosin beta chain; 87.7 4.3 0.00015 33.7 9.8 7 130-136 5-11 (101)
16 2v4h_A NF-kappa-B essential mo 87.3 3.9 0.00013 35.3 9.5 59 127-189 20-78 (110)
17 3cvf_A Homer-3, homer protein 87.0 1.2 4.1E-05 36.4 5.9 62 132-193 7-68 (79)
18 3u1c_A Tropomyosin alpha-1 cha 86.8 5.4 0.00018 33.2 10.0 41 149-189 27-67 (101)
19 1wt6_A Myotonin-protein kinase 86.8 4.8 0.00016 33.1 9.3 60 134-193 13-72 (81)
20 1ci6_A Transcription factor AT 86.6 3.9 0.00013 31.5 8.4 36 152-187 23-58 (63)
21 3na7_A HP0958; flagellar bioge 86.4 4.2 0.00014 38.4 10.3 14 285-298 175-188 (256)
22 1hjb_A Ccaat/enhancer binding 86.4 7.5 0.00026 32.1 10.5 48 147-194 31-78 (87)
23 3ghg_A Fibrinogen alpha chain; 86.3 2 6.7E-05 45.8 8.6 26 170-195 114-139 (562)
24 3tnu_B Keratin, type II cytosk 85.9 8.7 0.0003 32.9 11.2 52 142-193 33-95 (129)
25 3oja_B Anopheles plasmodium-re 85.6 6.5 0.00022 40.2 11.9 61 130-190 462-540 (597)
26 2v66_B Nuclear distribution pr 85.4 7.5 0.00026 33.5 10.3 44 135-178 25-68 (111)
27 2fxo_A Myosin heavy chain, car 85.2 6.6 0.00022 33.8 10.1 63 131-193 34-103 (129)
28 1gd2_E Transcription factor PA 84.1 1.7 5.9E-05 34.6 5.4 39 144-182 28-66 (70)
29 2yy0_A C-MYC-binding protein; 83.7 2 6.8E-05 32.4 5.3 31 152-182 19-49 (53)
30 3cvf_A Homer-3, homer protein 83.6 4.2 0.00014 33.2 7.6 14 207-220 48-61 (79)
31 1t2k_D Cyclic-AMP-dependent tr 83.4 3.5 0.00012 31.2 6.7 35 154-188 24-58 (61)
32 3trt_A Vimentin; cytoskeleton, 82.9 13 0.00044 28.9 10.0 64 130-193 8-76 (77)
33 3tnu_A Keratin, type I cytoske 82.8 8.3 0.00029 33.2 9.7 57 138-194 38-98 (131)
34 3oja_A Leucine-rich immune mol 82.7 6.4 0.00022 39.6 10.3 64 131-194 414-477 (487)
35 1ci6_A Transcription factor AT 82.7 3.8 0.00013 31.6 6.7 32 149-180 27-58 (63)
36 1t2k_D Cyclic-AMP-dependent tr 82.6 7.6 0.00026 29.3 8.3 33 161-193 24-56 (61)
37 3oja_B Anopheles plasmodium-re 82.4 6 0.0002 40.5 10.1 60 134-193 505-564 (597)
38 3htk_A Structural maintenance 81.9 11 0.00038 27.9 9.0 51 132-182 6-56 (60)
39 1ic2_A Tropomyosin alpha chain 81.7 12 0.00043 29.7 9.7 51 139-189 14-64 (81)
40 1ic2_A Tropomyosin alpha chain 81.6 15 0.00051 29.2 10.1 54 137-190 5-58 (81)
41 3mq7_A Bone marrow stromal ant 81.3 15 0.00051 32.1 10.6 64 131-194 25-99 (121)
42 2dgc_A Protein (GCN4); basic d 81.2 5.3 0.00018 30.9 7.0 31 151-181 29-59 (63)
43 3cve_A Homer protein homolog 1 81.1 5.1 0.00017 32.2 7.1 50 165-220 6-55 (72)
44 3iv1_A Tumor susceptibility ge 80.9 14 0.00049 30.1 9.7 66 128-193 8-73 (78)
45 3o0z_A RHO-associated protein 80.7 11 0.00038 34.6 10.2 25 134-158 51-75 (168)
46 4gkw_A Spindle assembly abnorm 80.3 13 0.00044 33.4 10.1 53 137-189 31-83 (167)
47 2wt7_A Proto-oncogene protein 80.2 11 0.00036 28.9 8.4 34 154-187 25-58 (63)
48 2wt7_A Proto-oncogene protein 80.0 6.2 0.00021 30.2 7.0 34 160-193 24-57 (63)
49 4etp_A Kinesin-like protein KA 79.9 3.3 0.00011 42.0 7.1 57 133-189 5-61 (403)
50 3efg_A Protein SLYX homolog; x 79.7 5.4 0.00018 32.1 6.9 51 136-186 12-62 (78)
51 2v71_A Nuclear distribution pr 79.6 13 0.00044 34.7 10.3 41 147-187 90-130 (189)
52 3u1c_A Tropomyosin alpha-1 cha 79.1 14 0.00049 30.6 9.6 6 130-135 5-10 (101)
53 2xdj_A Uncharacterized protein 79.0 20 0.00068 29.2 10.1 44 146-189 21-64 (83)
54 3htk_A Structural maintenance 78.5 15 0.00052 27.2 8.7 53 138-190 5-57 (60)
55 1nkp_B MAX protein, MYC proto- 78.1 2.3 7.7E-05 33.9 4.2 36 139-174 41-76 (83)
56 1gu4_A CAAT/enhancer binding p 77.2 16 0.00055 29.5 9.0 28 166-193 43-70 (78)
57 1jnm_A Proto-oncogene C-JUN; B 77.0 2.9 0.0001 31.8 4.4 33 161-193 24-56 (62)
58 3m91_A Proteasome-associated A 76.5 9 0.00031 28.8 6.8 37 155-191 12-48 (51)
59 3he5_B Synzip2; heterodimeric 76.2 10 0.00034 28.1 6.8 41 150-190 8-48 (52)
60 2dfs_A Myosin-5A; myosin-V, in 76.0 9.6 0.00033 43.4 10.0 22 149-170 981-1002(1080)
61 3lay_A Zinc resistance-associa 75.5 20 0.00068 32.8 10.2 62 126-187 66-134 (175)
62 2fxo_A Myosin heavy chain, car 75.4 22 0.00074 30.6 10.0 65 131-195 20-91 (129)
63 4h22_A Leucine-rich repeat fli 75.3 11 0.00037 32.2 7.8 41 149-189 27-67 (103)
64 1jnm_A Proto-oncogene C-JUN; B 75.3 6.8 0.00023 29.8 6.0 38 152-189 22-59 (62)
65 1a93_B MAX protein, coiled coi 75.1 4 0.00014 28.6 4.2 28 158-185 6-33 (34)
66 3na7_A HP0958; flagellar bioge 75.1 15 0.00051 34.6 9.7 56 131-186 90-145 (256)
67 3nmd_A CGMP dependent protein 74.7 8.5 0.00029 31.0 6.6 49 132-187 20-68 (72)
68 3oja_A Leucine-rich immune mol 74.4 16 0.00054 36.7 10.2 58 136-193 412-469 (487)
69 3q8t_A Beclin-1; autophagy, AT 74.2 28 0.00095 28.8 9.9 8 136-143 9-16 (96)
70 1nkp_A C-MYC, MYC proto-oncoge 73.8 6.7 0.00023 31.9 6.0 40 139-178 46-85 (88)
71 3o0z_A RHO-associated protein 73.5 21 0.00073 32.7 9.8 50 144-193 89-138 (168)
72 2oqq_A Transcription factor HY 73.3 12 0.00043 27.2 6.5 37 146-182 4-40 (42)
73 3bas_A Myosin heavy chain, str 73.2 36 0.0012 27.6 11.2 59 136-194 12-70 (89)
74 1wt6_A Myotonin-protein kinase 73.1 21 0.00073 29.3 8.7 30 156-185 42-71 (81)
75 3u06_A Protein claret segregat 72.6 6.1 0.00021 40.3 6.7 56 134-189 6-61 (412)
76 3swf_A CGMP-gated cation chann 72.6 13 0.00044 30.1 7.2 31 135-165 4-34 (74)
77 2xdj_A Uncharacterized protein 72.5 19 0.00066 29.3 8.4 47 148-194 9-55 (83)
78 3ghg_A Fibrinogen alpha chain; 72.4 7.9 0.00027 41.3 7.6 41 149-189 114-154 (562)
79 3tnu_B Keratin, type II cytosk 72.3 13 0.00043 31.9 7.7 21 170-190 79-99 (129)
80 2efr_A General control protein 71.5 54 0.0018 29.6 11.9 17 132-148 43-59 (155)
81 2v66_B Nuclear distribution pr 70.8 37 0.0013 29.2 10.2 58 131-188 3-71 (111)
82 1nkp_B MAX protein, MYC proto- 70.8 9.6 0.00033 30.2 6.2 36 159-194 47-82 (83)
83 3u59_A Tropomyosin beta chain; 70.3 40 0.0014 27.7 10.1 48 145-192 44-91 (101)
84 1g6u_A Domain swapped dimer; d 70.3 5.9 0.0002 28.9 4.3 44 149-193 4-47 (48)
85 3mq7_A Bone marrow stromal ant 70.2 23 0.0008 31.0 8.8 35 147-181 73-107 (121)
86 2eqb_B RAB guanine nucleotide 70.2 28 0.00095 29.4 9.1 58 132-189 6-63 (97)
87 3efg_A Protein SLYX homolog; x 70.0 10 0.00035 30.5 6.2 45 145-189 14-58 (78)
88 1gd2_E Transcription factor PA 69.4 9 0.00031 30.4 5.6 38 152-189 29-66 (70)
89 4h22_A Leucine-rich repeat fli 69.4 45 0.0015 28.5 10.2 59 131-189 23-81 (103)
90 2ocy_A RAB guanine nucleotide 68.8 30 0.001 31.3 9.6 34 161-194 110-143 (154)
91 3q0x_A Centriole protein; cent 68.8 22 0.00074 34.0 9.2 60 127-186 160-219 (228)
92 3okq_A BUD site selection prot 68.4 38 0.0013 30.4 10.0 65 130-194 13-82 (141)
93 3a7p_A Autophagy protein 16; c 68.4 37 0.0013 30.7 10.1 17 135-151 72-88 (152)
94 1go4_E MAD1 (mitotic arrest de 68.3 41 0.0014 28.5 9.8 31 133-163 14-44 (100)
95 3m9b_A Proteasome-associated A 68.1 4.1 0.00014 39.6 4.0 42 153-194 55-96 (251)
96 1lwu_C Fibrinogen gamma chain; 68.0 13 0.00046 37.0 7.9 50 133-189 7-56 (323)
97 3m91_A Proteasome-associated A 67.6 23 0.00079 26.6 7.2 37 149-185 13-49 (51)
98 3i00_A HIP-I, huntingtin-inter 67.1 33 0.0011 29.7 9.2 8 176-183 71-78 (120)
99 3swy_A Cyclic nucleotide-gated 67.0 21 0.00073 26.3 6.8 31 135-165 2-32 (46)
100 4etp_A Kinesin-like protein KA 66.7 13 0.00044 37.7 7.6 21 395-415 314-334 (403)
101 1gu4_A CAAT/enhancer binding p 66.1 13 0.00044 30.0 6.0 51 142-192 26-76 (78)
102 3q8t_A Beclin-1; autophagy, AT 65.7 50 0.0017 27.3 9.7 40 150-189 9-48 (96)
103 3s9g_A Protein hexim1; cyclin 65.5 33 0.0011 29.2 8.6 45 149-193 41-85 (104)
104 3tnu_A Keratin, type I cytoske 65.5 13 0.00045 31.9 6.4 57 138-194 31-91 (131)
105 2oto_A M protein; helical coil 65.3 39 0.0013 29.6 9.6 50 136-185 34-83 (155)
106 3a7o_A Autophagy protein 16; c 65.2 24 0.00083 28.5 7.3 60 127-186 14-73 (75)
107 3vkg_A Dynein heavy chain, cyt 65.1 26 0.00088 44.6 11.1 59 136-194 2026-2084(3245)
108 4gkw_A Spindle assembly abnorm 64.7 75 0.0026 28.5 11.1 60 131-190 11-77 (167)
109 1i84_S Smooth muscle myosin he 64.5 18 0.0006 41.3 8.9 32 134-165 867-898 (1184)
110 1deq_A Fibrinogen (alpha chain 64.0 34 0.0011 35.2 9.9 13 170-182 117-129 (390)
111 1nlw_A MAD protein, MAX dimeri 64.0 13 0.00045 29.8 5.7 37 138-174 40-76 (80)
112 2yy0_A C-MYC-binding protein; 63.4 14 0.00048 27.7 5.4 30 159-188 19-48 (53)
113 3jsv_C NF-kappa-B essential mo 63.4 22 0.00074 30.0 7.0 53 134-190 5-57 (94)
114 2efr_A General control protein 61.7 58 0.002 29.4 10.1 38 150-187 75-112 (155)
115 1wle_A Seryl-tRNA synthetase; 61.2 39 0.0013 35.4 10.2 20 170-189 120-139 (501)
116 1cii_A Colicin IA; bacteriocin 60.5 66 0.0022 34.2 11.4 79 115-193 325-418 (602)
117 1go4_E MAD1 (mitotic arrest de 59.9 41 0.0014 28.4 8.2 28 146-173 13-40 (100)
118 2zqm_A Prefoldin beta subunit 59.8 26 0.00089 28.6 7.0 41 130-170 69-109 (117)
119 1hjb_A Ccaat/enhancer binding 59.7 16 0.00055 30.1 5.6 37 158-194 35-71 (87)
120 4dci_A Uncharacterized protein 59.6 44 0.0015 30.0 8.9 41 123-163 21-61 (150)
121 2pnv_A Small conductance calci 59.4 17 0.00057 26.5 5.0 31 162-192 12-42 (43)
122 2eqb_B RAB guanine nucleotide 58.7 61 0.0021 27.3 9.0 49 145-193 12-60 (97)
123 2no2_A HIP-I, huntingtin-inter 58.5 82 0.0028 26.6 9.9 11 146-156 30-40 (107)
124 1lwu_C Fibrinogen gamma chain; 58.1 25 0.00087 35.0 7.7 45 149-193 9-53 (323)
125 1l8d_A DNA double-strand break 56.8 75 0.0025 25.8 9.3 30 134-163 13-42 (112)
126 1dip_A Delta-sleep-inducing pe 56.4 8.8 0.0003 31.2 3.3 27 154-180 17-43 (78)
127 1i84_S Smooth muscle myosin he 56.3 52 0.0018 37.5 10.8 40 134-173 860-899 (1184)
128 3m9b_A Proteasome-associated A 55.7 13 0.00045 36.1 5.1 34 161-194 56-89 (251)
129 1gmj_A ATPase inhibitor; coile 55.5 44 0.0015 27.5 7.5 15 161-175 53-67 (84)
130 3qne_A Seryl-tRNA synthetase, 54.9 36 0.0012 35.7 8.6 20 171-190 76-95 (485)
131 1joc_A EEA1, early endosomal a 54.2 79 0.0027 26.9 9.3 42 132-173 5-46 (125)
132 2dq0_A Seryl-tRNA synthetase; 54.0 33 0.0011 35.3 8.1 19 171-189 74-92 (455)
133 2zvf_A Alanyl-tRNA synthetase; 53.4 13 0.00045 32.3 4.4 52 135-186 8-59 (171)
134 3he5_A Synzip1; heterodimeric 53.2 64 0.0022 23.6 7.3 40 143-182 8-47 (49)
135 2dgc_A Protein (GCN4); basic d 53.0 18 0.00062 27.8 4.5 31 159-189 30-60 (63)
136 2b9c_A Striated-muscle alpha t 52.9 82 0.0028 27.9 9.4 66 129-194 50-122 (147)
137 2w6a_A ARF GTPase-activating p 52.4 69 0.0024 25.0 7.6 22 157-178 39-60 (63)
138 4emc_A Monopolin complex subun 52.1 31 0.0011 32.3 6.7 38 154-191 22-59 (190)
139 1a93_B MAX protein, coiled coi 51.6 21 0.00073 25.0 4.2 29 150-178 5-33 (34)
140 1zxa_A CGMP-dependent protein 51.5 19 0.00066 28.5 4.6 41 130-170 10-50 (67)
141 3ol1_A Vimentin; structural ge 51.2 93 0.0032 26.4 9.2 39 131-169 20-58 (119)
142 1wlq_A Geminin; coiled-coil; 2 51.2 57 0.0019 26.9 7.4 40 130-173 27-66 (83)
143 2xnx_M M protein, M1-BC1; cell 51.1 29 0.001 31.2 6.2 36 157-192 71-106 (146)
144 2wt7_B Transcription factor MA 51.0 32 0.0011 28.6 6.0 15 174-188 70-84 (90)
145 1jcd_A Major outer membrane li 50.7 66 0.0023 24.2 7.2 18 149-166 8-25 (52)
146 1fxk_A Prefoldin; archaeal pro 50.4 32 0.0011 27.6 5.9 39 130-168 64-102 (107)
147 1m1j_A Fibrinogen alpha subuni 50.0 1E+02 0.0034 32.5 10.8 31 164-194 109-139 (491)
148 1l8d_A DNA double-strand break 48.7 57 0.002 26.5 7.3 29 154-182 73-101 (112)
149 3mq9_A Bone marrow stromal ant 48.2 1.1E+02 0.0037 30.4 10.6 26 164-189 395-420 (471)
150 3vkg_A Dynein heavy chain, cyt 47.9 50 0.0017 42.1 9.6 12 391-402 2528-2539(3245)
151 2oto_A M protein; helical coil 47.1 1.2E+02 0.0042 26.4 9.6 19 167-185 58-76 (155)
152 2zqm_A Prefoldin beta subunit 47.0 63 0.0022 26.2 7.3 15 135-149 24-38 (117)
153 3m0d_C TNF receptor-associated 46.5 96 0.0033 23.7 9.0 36 130-165 5-40 (65)
154 2no2_A HIP-I, huntingtin-inter 46.4 1.3E+02 0.0043 25.4 9.2 41 149-189 58-98 (107)
155 3s4r_A Vimentin; alpha-helix, 46.3 40 0.0014 27.7 5.9 29 161-189 58-86 (93)
156 2lw1_A ABC transporter ATP-bin 46.3 1E+02 0.0034 24.7 8.2 27 136-162 20-46 (89)
157 1m1j_C Fibrinogen gamma chain; 45.8 38 0.0013 34.8 7.0 12 134-145 41-52 (409)
158 1dh3_A Transcription factor CR 45.2 24 0.00083 26.4 4.1 24 164-187 27-50 (55)
159 2oxj_A Hybrid alpha/beta pepti 45.0 45 0.0015 23.3 5.0 24 157-180 6-29 (34)
160 2wt7_B Transcription factor MA 44.9 57 0.002 27.1 6.6 21 169-189 51-71 (90)
161 3jsv_C NF-kappa-B essential mo 44.7 1.4E+02 0.0048 25.1 10.8 46 149-194 44-89 (94)
162 1m1j_B Fibrinogen beta chain; 44.6 1E+02 0.0036 32.2 10.1 15 131-145 100-114 (464)
163 1m1j_B Fibrinogen beta chain; 44.6 1.3E+02 0.0043 31.6 10.6 13 319-331 300-312 (464)
164 2lf0_A Uncharacterized protein 44.4 21 0.00072 31.3 4.1 49 145-195 10-58 (123)
165 1ses_A Seryl-tRNA synthetase; 44.1 47 0.0016 33.8 7.3 21 170-190 68-88 (421)
166 4b6x_A AVRRPS4, avirulence pro 43.6 1.2E+02 0.0041 25.1 8.2 30 131-160 22-51 (90)
167 1cxz_B Protein (PKN); protein- 43.4 1.1E+02 0.0039 25.2 8.1 70 125-194 12-84 (86)
168 3a7o_A Autophagy protein 16; c 43.2 48 0.0016 26.8 5.6 17 148-164 21-37 (75)
169 3swk_A Vimentin; cytoskeleton, 43.2 89 0.0031 25.2 7.5 36 134-169 3-38 (86)
170 1t6f_A Geminin; coiled-coil, c 42.9 50 0.0017 23.4 5.0 19 153-171 15-33 (37)
171 3lss_A Seryl-tRNA synthetase; 42.9 90 0.0031 32.7 9.3 16 175-190 113-128 (484)
172 3s9g_A Protein hexim1; cyclin 42.8 1.1E+02 0.0036 26.2 8.0 47 148-194 33-79 (104)
173 3he5_B Synzip2; heterodimeric 42.7 60 0.0021 24.0 5.7 38 156-193 7-44 (52)
174 1gk7_A Vimentin; intermediate 42.7 58 0.002 23.0 5.5 29 154-182 8-36 (39)
175 1hx1_B BAG-1, BAG-family molec 42.6 1E+02 0.0036 26.7 8.1 85 140-224 13-109 (114)
176 1t3j_A Mitofusin 1; coiled coi 42.5 1.5E+02 0.0052 24.9 9.0 19 170-188 75-93 (96)
177 2l5g_A GPS2 protein, G protein 42.2 36 0.0012 24.3 4.2 26 139-164 9-34 (38)
178 2l5g_B Putative uncharacterize 42.0 51 0.0017 24.1 5.1 33 133-165 4-36 (42)
179 1x79_B RAB GTPase binding effe 42.0 91 0.0031 26.8 7.7 28 166-193 38-65 (112)
180 2w6a_A ARF GTPase-activating p 41.7 1E+02 0.0034 24.1 7.1 43 150-192 18-60 (63)
181 1lq7_A Alpha3W; three helix bu 40.9 29 0.001 26.8 3.9 57 134-190 5-65 (67)
182 1fmh_A General control protein 40.8 42 0.0014 22.9 4.2 13 174-186 16-28 (33)
183 3i00_A HIP-I, huntingtin-inter 40.8 1.8E+02 0.006 25.1 9.6 20 162-181 43-62 (120)
184 1kd8_B GABH BLL, GCN4 acid bas 40.8 58 0.002 23.0 5.1 21 160-180 9-29 (36)
185 1vcs_A Vesicle transport throu 40.7 88 0.003 25.8 7.2 27 131-157 38-64 (102)
186 3m48_A General control protein 40.2 43 0.0015 23.3 4.3 21 159-179 7-27 (33)
187 1jcd_A Major outer membrane li 40.0 1.2E+02 0.004 22.8 7.8 23 141-163 7-29 (52)
188 1uii_A Geminin; human, DNA rep 39.9 98 0.0033 25.5 7.1 36 134-173 39-74 (83)
189 1uii_A Geminin; human, DNA rep 39.3 82 0.0028 25.9 6.6 31 156-186 43-73 (83)
190 1nlw_A MAD protein, MAX dimeri 39.3 70 0.0024 25.5 6.2 26 162-187 50-75 (80)
191 2wvr_A Geminin; DNA replicatio 39.0 96 0.0033 29.4 7.9 38 132-173 106-143 (209)
192 3oa7_A Head morphogenesis prot 38.8 35 0.0012 32.2 4.9 66 122-187 4-72 (206)
193 2fup_A Hypothetical protein PA 38.6 1.8E+02 0.006 24.5 10.4 87 331-417 8-107 (157)
194 3w03_C DNA repair protein XRCC 38.5 81 0.0028 29.2 7.3 39 144-182 144-182 (184)
195 3lay_A Zinc resistance-associa 38.3 1.5E+02 0.0052 26.9 9.0 57 137-193 70-133 (175)
196 1fxk_A Prefoldin; archaeal pro 38.1 74 0.0025 25.4 6.3 9 139-147 23-31 (107)
197 4e61_A Protein BIM1; EB1-like 37.8 73 0.0025 27.2 6.3 26 149-174 15-40 (106)
198 1fxk_C Protein (prefoldin); ar 37.6 89 0.0031 26.2 7.0 43 130-172 87-129 (133)
199 1kd8_A GABH AIV, GCN4 acid bas 37.5 49 0.0017 23.4 4.3 11 168-178 17-27 (36)
200 1kd8_A GABH AIV, GCN4 acid bas 37.1 72 0.0025 22.5 5.1 26 135-160 5-30 (36)
201 3ra3_A P1C; coiled coil domain 37.0 36 0.0012 22.5 3.3 23 171-193 5-27 (28)
202 3swy_A Cyclic nucleotide-gated 36.8 1.2E+02 0.0043 22.2 6.9 42 144-188 4-45 (46)
203 2ocy_A RAB guanine nucleotide 36.7 1.3E+02 0.0044 27.2 8.1 35 138-172 6-40 (154)
204 4b4t_K 26S protease regulatory 36.4 48 0.0016 33.9 6.0 45 149-193 46-90 (428)
205 3cl3_D NF-kappa-B essential mo 36.3 16 0.00056 32.3 2.1 56 134-189 12-71 (130)
206 3q0x_A Centriole protein; cent 36.2 1.5E+02 0.005 28.3 8.9 48 146-193 165-212 (228)
207 3swf_A CGMP-gated cation chann 35.9 1.5E+02 0.0052 23.8 7.6 48 143-193 5-52 (74)
208 1sfc_D Protein (SNAP-25B), pro 35.9 1.7E+02 0.0057 23.4 11.0 63 128-190 19-81 (87)
209 1gmj_A ATPase inhibitor; coile 35.8 1.8E+02 0.0063 23.9 9.5 25 169-193 54-78 (84)
210 3vmx_A Voltage-gated hydrogen 35.7 1.4E+02 0.0047 22.4 7.1 25 155-179 14-38 (48)
211 1nkp_A C-MYC, MYC proto-oncoge 35.7 84 0.0029 25.4 6.2 61 133-193 18-86 (88)
212 1gl2_D Syntaxin 8, vesicle tra 35.7 1.4E+02 0.0047 22.4 8.2 58 132-189 3-60 (65)
213 1t6f_A Geminin; coiled-coil, c 35.4 1E+02 0.0034 21.9 5.6 6 156-161 25-30 (37)
214 2c5k_T Syntaxin TLG1, T-snare 35.2 60 0.002 26.8 5.3 27 131-157 36-62 (95)
215 2v4h_A NF-kappa-B essential mo 35.0 1.3E+02 0.0046 25.8 7.5 41 130-170 27-73 (110)
216 3gp4_A Transcriptional regulat 35.0 2.1E+02 0.0073 24.4 9.1 34 149-182 85-118 (142)
217 3u06_A Protein claret segregat 34.9 1.1E+02 0.0038 31.1 8.3 37 154-190 5-41 (412)
218 1am9_A Srebp-1A, protein (ster 34.9 76 0.0026 25.2 5.7 24 142-165 47-70 (82)
219 4dyl_A Tyrosine-protein kinase 34.9 2.3E+02 0.0077 28.2 10.5 39 131-169 302-340 (406)
220 2ke4_A CDC42-interacting prote 34.8 2E+02 0.0067 23.9 8.8 29 131-159 15-43 (98)
221 1deq_A Fibrinogen (alpha chain 34.5 1.5E+02 0.005 30.6 9.0 41 149-189 117-157 (390)
222 1x8y_A Lamin A/C; structural p 34.4 66 0.0022 25.9 5.3 12 178-189 33-44 (86)
223 3onj_A T-snare VTI1; helix, HA 34.1 1.9E+02 0.0065 23.5 8.8 26 132-157 35-60 (97)
224 1fxk_C Protein (prefoldin); ar 33.9 1.6E+02 0.0055 24.6 8.0 47 134-180 84-130 (133)
225 3plt_A Sphingolipid long chain 33.9 1.1E+02 0.0037 29.5 7.5 28 167-194 132-159 (234)
226 1kd8_B GABH BLL, GCN4 acid bas 33.7 1.1E+02 0.0038 21.6 5.6 22 136-157 6-27 (36)
227 2pms_C Pneumococcal surface pr 33.6 2.1E+02 0.0072 25.1 8.7 40 151-194 50-89 (125)
228 1l4a_D S-SNAP25 fusion protein 33.3 1.9E+02 0.0064 23.3 9.1 67 123-189 15-81 (87)
229 1fzc_C Fibrin; blood coagulati 33.3 22 0.00077 35.4 2.9 38 152-189 11-48 (319)
230 3swk_A Vimentin; cytoskeleton, 33.3 1.9E+02 0.0065 23.3 8.2 12 149-160 4-15 (86)
231 1p9i_A Cortexillin I/GCN4 hybr 33.2 56 0.0019 22.0 3.8 24 166-189 6-29 (31)
232 2qyw_A Vesicle transport throu 33.2 1.2E+02 0.004 25.1 6.8 26 132-157 50-75 (102)
233 3viq_B Mating-type switching p 32.9 1.7E+02 0.0057 24.1 7.5 56 134-189 4-67 (85)
234 3qne_A Seryl-tRNA synthetase, 32.8 1.5E+02 0.0051 31.1 9.0 48 147-194 42-92 (485)
235 2q6q_A Spindle POLE BODY compo 32.8 94 0.0032 24.9 5.8 46 147-192 5-57 (74)
236 1wle_A Seryl-tRNA synthetase; 32.7 2.1E+02 0.0073 29.9 10.2 18 176-193 119-136 (501)
237 1wlq_A Geminin; coiled-coil; 2 31.9 1.3E+02 0.0044 24.8 6.6 23 159-181 38-60 (83)
238 1hlo_A Protein (transcription 31.7 40 0.0014 26.4 3.6 26 140-165 52-77 (80)
239 1gk7_A Vimentin; intermediate 31.2 65 0.0022 22.8 4.2 32 145-176 6-37 (39)
240 3vp9_A General transcriptional 31.2 89 0.0031 26.1 5.7 62 130-191 17-86 (92)
241 2k48_A Nucleoprotein; viral pr 31.0 2.3E+02 0.008 24.3 8.3 17 174-190 83-99 (107)
242 3c3g_A Alpha/beta peptide with 31.0 1E+02 0.0035 21.4 5.0 13 164-176 12-24 (33)
243 4b4t_K 26S protease regulatory 30.8 68 0.0023 32.7 6.0 46 134-186 45-90 (428)
244 2zxx_A Geminin; coiled-coil, c 30.5 1.2E+02 0.004 24.8 6.1 38 130-171 23-60 (79)
245 2xzr_A Immunoglobulin-binding 30.4 2.6E+02 0.0087 23.9 9.0 41 154-194 50-90 (114)
246 3c3g_A Alpha/beta peptide with 30.1 91 0.0031 21.7 4.6 21 136-156 5-25 (33)
247 3vmx_A Voltage-gated hydrogen 30.0 1.7E+02 0.0057 21.9 6.3 36 152-187 4-39 (48)
248 1fmh_A General control protein 29.8 72 0.0025 21.7 4.0 27 155-181 4-30 (33)
249 4ani_A Protein GRPE; chaperone 29.7 82 0.0028 29.7 5.9 40 131-170 59-98 (213)
250 2ve7_A Kinetochore protein HEC 29.4 34 0.0011 33.6 3.3 27 159-185 185-211 (315)
251 1zxa_A CGMP-dependent protein 29.3 74 0.0025 25.2 4.6 28 159-186 25-52 (67)
252 2ve7_A Kinetochore protein HEC 29.3 56 0.0019 32.0 4.9 29 165-193 184-212 (315)
253 2dq0_A Seryl-tRNA synthetase; 29.3 1.7E+02 0.006 30.0 8.8 48 147-194 40-90 (455)
254 2z5i_A TM, general control pro 29.2 1.5E+02 0.0053 21.9 6.2 37 137-173 4-40 (52)
255 2zxx_A Geminin; coiled-coil, c 29.2 1.3E+02 0.0046 24.4 6.3 21 168-188 36-56 (79)
256 4e61_A Protein BIM1; EB1-like 29.0 2.7E+02 0.0093 23.7 9.3 11 207-217 87-97 (106)
257 3c3f_A Alpha/beta peptide with 28.2 1.2E+02 0.0042 21.1 5.0 11 165-175 14-24 (34)
258 3kin_B Kinesin heavy chain; mo 28.1 63 0.0022 27.4 4.4 40 122-164 76-115 (117)
259 1uo4_A General control protein 28.0 97 0.0033 21.7 4.5 21 159-179 8-28 (34)
260 2e7s_A RAB guanine nucleotide 27.8 36 0.0012 30.3 2.9 64 130-193 45-130 (135)
261 1ik9_A DNA repair protein XRCC 27.6 2.8E+02 0.0097 25.8 9.2 50 140-189 127-176 (213)
262 2dq3_A Seryl-tRNA synthetase; 27.6 76 0.0026 32.2 5.7 18 136-153 42-59 (425)
263 2avr_X Adhesion A; antiparalle 27.4 3.1E+02 0.011 23.9 9.0 15 208-222 100-114 (119)
264 1n7s_D SNAP-25A; neuronal snar 27.0 2E+02 0.0068 21.5 9.7 59 131-189 3-61 (66)
265 3ni0_A Bone marrow stromal ant 27.0 2.9E+02 0.0098 23.4 9.0 16 174-189 68-83 (99)
266 1fzc_C Fibrin; blood coagulati 26.8 31 0.0011 34.3 2.6 34 160-193 5-38 (319)
267 1s1c_X RHO-associated, coiled- 26.8 2.4E+02 0.0083 22.5 7.7 31 135-165 3-33 (71)
268 1m1j_C Fibrinogen gamma chain; 26.7 1E+02 0.0035 31.6 6.5 18 131-148 45-62 (409)
269 4b4t_M 26S protease regulatory 26.6 42 0.0014 34.4 3.6 31 153-183 40-70 (434)
270 1m1j_A Fibrinogen alpha subuni 26.5 3.2E+02 0.011 28.9 10.0 42 149-190 115-156 (491)
271 4ath_A MITF, microphthalmia-as 26.0 1.9E+02 0.0063 23.7 6.6 48 138-189 32-79 (83)
272 2wvr_A Geminin; DNA replicatio 25.9 1.7E+02 0.0057 27.8 7.1 33 155-187 111-143 (209)
273 2k48_A Nucleoprotein; viral pr 25.9 3.1E+02 0.011 23.5 9.9 16 179-194 81-96 (107)
274 2lw1_A ABC transporter ATP-bin 25.8 2.5E+02 0.0085 22.3 7.5 24 132-155 23-46 (89)
275 4ani_A Protein GRPE; chaperone 25.7 3.6E+02 0.012 25.3 9.5 11 212-222 145-155 (213)
276 2nps_D Syntaxin-6; vesicle fus 25.7 2.3E+02 0.0078 22.2 7.1 59 132-190 13-71 (82)
277 2oqq_A Transcription factor HY 25.6 1.7E+02 0.0058 21.3 5.6 20 167-186 11-30 (42)
278 3fpp_A Macrolide-specific effl 25.6 2.4E+02 0.0082 26.4 8.5 28 136-163 67-94 (341)
279 3ni0_A Bone marrow stromal ant 25.3 2.8E+02 0.0097 23.4 7.7 21 166-186 67-87 (99)
280 2f1m_A Acriflavine resistance 25.2 3.6E+02 0.012 24.4 9.4 29 136-164 58-86 (277)
281 3c3f_A Alpha/beta peptide with 25.2 1.2E+02 0.0042 21.1 4.6 20 136-155 6-25 (34)
282 3v86_A De novo design helix; c 25.2 86 0.003 20.5 3.6 20 171-190 5-24 (27)
283 2pnv_A Small conductance calci 24.9 97 0.0033 22.5 4.2 30 132-161 10-39 (43)
284 3uo3_A J-type CO-chaperone JAC 24.9 2.3E+02 0.008 25.4 7.9 129 286-422 34-177 (181)
285 2l5g_B Putative uncharacterize 24.7 1.7E+02 0.006 21.3 5.5 31 149-179 6-36 (42)
286 4fi5_A Nucleoprotein; structur 24.7 3E+02 0.01 23.8 7.9 65 147-211 24-100 (113)
287 3trt_A Vimentin; cytoskeleton, 24.4 2.4E+02 0.0081 21.5 9.6 22 161-182 51-72 (77)
288 3he4_A Synzip6; heterodimeric 24.3 1.1E+02 0.0039 22.8 4.6 21 169-189 27-47 (56)
289 2xnx_M M protein, M1-BC1; cell 24.2 2.3E+02 0.0077 25.5 7.4 41 148-188 69-109 (146)
290 1j1d_C Troponin I, TNI; THIN f 24.1 2.2E+02 0.0074 25.1 7.2 40 147-186 67-106 (133)
291 3he4_A Synzip6; heterodimeric 24.1 2.3E+02 0.0077 21.2 6.3 27 163-189 28-54 (56)
292 1ses_A Seryl-tRNA synthetase; 24.1 1.7E+02 0.0059 29.6 7.6 17 177-193 68-84 (421)
293 2ve7_C Kinetochore protein NUF 24.0 41 0.0014 32.0 2.8 25 164-188 153-177 (250)
294 3mud_A DNA repair protein XRCC 23.9 2.6E+02 0.009 25.7 8.0 39 136-174 126-164 (175)
295 2p4v_A Transcription elongatio 23.8 3.4E+02 0.012 23.8 8.6 11 290-300 124-134 (158)
296 3hhm_B NISH2 P85alpha; PI3KCA, 23.7 3.2E+02 0.011 27.5 9.3 17 131-147 168-184 (373)
297 2r2v_A GCN4 leucine zipper; co 23.7 1.4E+02 0.0047 20.9 4.6 21 136-156 6-26 (34)
298 1uix_A RHO-associated kinase; 23.4 2.8E+02 0.0097 22.1 8.3 29 137-165 3-31 (71)
299 3m48_A General control protein 23.4 1.2E+02 0.0042 21.0 4.3 25 163-187 4-28 (33)
300 3m0a_A TNF receptor-associated 23.3 2.3E+02 0.008 21.1 8.8 51 136-186 10-60 (66)
301 2hy6_A General control protein 23.1 1.2E+02 0.0041 21.2 4.2 18 161-178 10-27 (34)
302 1lwu_B Fibrinogen beta chain; 23.0 84 0.0029 31.2 4.9 7 288-294 125-131 (323)
303 4ati_A MITF, microphthalmia-as 22.9 65 0.0022 27.4 3.5 47 138-188 67-113 (118)
304 2pih_A Protein YMCA; regulate 22.9 3.8E+02 0.013 23.3 10.2 69 154-222 42-115 (151)
305 3a2a_A Voltage-gated hydrogen 22.7 1.7E+02 0.0059 22.5 5.4 34 153-186 12-45 (58)
306 3ra3_B P2F; coiled coil domain 22.4 1E+02 0.0036 20.3 3.6 20 173-192 7-26 (28)
307 1yzm_A FYVE-finger-containing 22.4 2E+02 0.0068 21.6 5.7 16 136-151 7-22 (51)
308 2aze_B Transcription factor E2 22.3 1.5E+02 0.0052 24.8 5.7 36 152-187 6-41 (106)
309 3hd7_A Vesicle-associated memb 22.2 3.1E+02 0.011 22.1 10.1 55 130-184 4-58 (91)
310 3mud_A DNA repair protein XRCC 22.0 3.5E+02 0.012 24.9 8.4 49 140-188 123-171 (175)
311 2bni_A General control protein 21.6 1.3E+02 0.0043 21.1 4.0 11 165-175 14-24 (34)
312 1nxk_A MAP kinase-activated pr 21.5 19 0.00066 34.9 -0.1 13 394-406 243-255 (400)
313 2wq1_A General control protein 21.5 2E+02 0.0067 20.0 5.0 9 167-175 15-23 (33)
314 4dk0_A Putative MACA; alpha-ha 21.3 2.2E+02 0.0075 26.9 7.3 29 136-164 68-96 (369)
315 2akf_A Coronin-1A; coiled coil 21.2 86 0.0029 21.4 3.1 24 150-173 4-27 (32)
316 1zme_C Proline utilization tra 21.2 1E+02 0.0034 22.6 3.9 18 134-151 47-64 (70)
317 2i1j_A Moesin; FERM, coiled-co 21.0 76 0.0026 33.5 4.3 31 323-357 501-531 (575)
318 3pdy_A Plectin; cytoskeleton, 20.9 4.4E+02 0.015 23.3 11.7 31 363-393 106-136 (210)
319 4dnd_A Syntaxin-10, SYN10; str 20.9 2.8E+02 0.0096 23.9 7.2 26 126-151 26-51 (130)
320 4aj5_A SKA1, spindle and kinet 20.7 2.3E+02 0.0078 23.7 6.2 46 149-194 34-79 (91)
321 2zdi_C Prefoldin subunit alpha 20.7 1.9E+02 0.0064 24.9 6.1 43 130-172 97-139 (151)
322 1i6z_A BAG-family molecular ch 20.7 4.4E+02 0.015 23.3 10.8 80 139-218 22-111 (135)
323 3rrk_A V-type ATPase 116 kDa s 20.6 1.9E+02 0.0065 27.8 6.8 16 389-404 291-307 (357)
324 2oxj_A Hybrid alpha/beta pepti 20.4 1.5E+02 0.0053 20.7 4.3 25 163-187 5-29 (34)
325 3iv1_A Tumor susceptibility ge 20.4 3.4E+02 0.012 21.9 9.8 51 143-193 9-59 (78)
326 1ytz_T Troponin T; muscle, THI 20.2 2.3E+02 0.0079 24.0 6.4 39 147-185 51-89 (107)
327 4egx_A Kinesin-like protein KI 20.2 2.8E+02 0.0096 25.0 7.4 22 132-153 6-27 (184)
328 3opc_A Uncharacterized protein 20.2 2.9E+02 0.0098 23.5 7.2 61 332-392 10-75 (154)
329 3w03_C DNA repair protein XRCC 20.1 1.8E+02 0.0062 26.9 6.2 40 134-173 141-180 (184)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.42 E-value=0.13 Score=42.31 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
.+-.+|++|++..=..|.-|+.+++.|+.++..+.+.++++......|..+..+++.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4667888898888888888888888888888888888888444333344444444433
No 2
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.73 E-value=0.18 Score=44.72 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+++++.+..+..++++..++..|+.++..++..++.+++++.+|+.++..++.++..|.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666666666666666665553
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.68 E-value=0.2 Score=44.34 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=54.2
Q ss_pred CCccccCcch--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 121 PGKIEDGLMD--KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 121 ~~~~~~~~d~--~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
..+|+|+.-. .....|++.++..++++.+|+.+|..++.+++.+...+.+|.+++.+|+.++..+++.+.
T Consensus 63 ALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 63 YLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555432 245577888888888888888888888888888888888888888888888888887664
No 4
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=93.02 E-value=0.49 Score=38.95 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa 183 (439)
.+.|.-++.+.+++.-+++.+|.+.++|+..++++...-+.++..|+.+|.
T Consensus 28 i~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 28 LRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999998889888888874
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=91.07 E-value=0.95 Score=45.40 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 149 eLqSELeaLkkElekLq 165 (439)
.||.+|+.+++.+.++.
T Consensus 401 ~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 35555555554444433
No 6
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=90.00 E-value=1.1 Score=41.95 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
-|..++++|+....+|..|++|...|..+++...+.+..|++++..++++......+
T Consensus 7 YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~ 63 (190)
T 4emc_A 7 YKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQ 63 (190)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 466779999999999999999998888887766666666555555555555444433
No 7
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.42 E-value=1.4 Score=35.52 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+.+|+--|....+|+....+++.+|++++.+...+++.++.++..+++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555666666666777777766777777777776666554
No 8
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=89.19 E-value=3 Score=33.49 Aligned_cols=57 Identities=26% Similarity=0.297 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
-++|+.+|...+++|..|..=+-.++..+.+..+.|..||.++..++.....++-..
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 378999999999999999999999999999999999999998888887777777655
No 9
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.05 E-value=2.5 Score=38.31 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 169 AELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 169 eELEkEnkELr~ELa~aeaQI~sL 192 (439)
+.|..|+.-|+-++..++.++..|
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444333333
No 10
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=88.43 E-value=2.6 Score=30.95 Aligned_cols=45 Identities=27% Similarity=0.271 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+++.+|++++.+|..|.+.++..|--...-+.+|+.+++.++.+|
T Consensus 3 nlvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888888777655556777777777776554
No 11
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.42 E-value=3.5 Score=33.88 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
|+.-+.-|+++=..|.-|+.|++.+++.|..|..++.++++....+..++..|+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555555555566677777777777777777777776667777666663
No 12
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=88.31 E-value=4.5 Score=32.98 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
...+++.+.|+-.+...++|+.+...+..+...|+.+..+.+.....|..+-..++.+++.+..
T Consensus 21 eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777777776666666666666666666666666655543
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.16 E-value=2.5 Score=39.48 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL 167 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqer 167 (439)
+|+..|+..++-+.+|++++..|..|+..++..
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 14
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=87.96 E-value=4 Score=32.77 Aligned_cols=59 Identities=24% Similarity=0.200 Sum_probs=45.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
++.++|+..+....+|+.+|..+...++..+.....++.|.+.+-+.|+..=-+++.|+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56788888888888888888888888888888888888877777777666555555544
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=87.68 E-value=4.3 Score=33.66 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=3.1
Q ss_pred hHHHHHH
Q 013627 130 DKKKKEF 136 (439)
Q Consensus 130 ~~~k~eL 136 (439)
+.||+++
T Consensus 5 d~iKkKm 11 (101)
T 3u59_A 5 EAIKKKM 11 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 16
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=87.28 E-value=3.9 Score=35.33 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=41.4
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
-++...+..|..+|...|+.....+.+++.++.++.++....+ .+.-|++|+...+..+
T Consensus 20 ~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE----~I~vLkaQv~IY~~DF 78 (110)
T 2v4h_A 20 HMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME----TVPVLKAQADIYKADF 78 (110)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3455678899999999999988888888888888777444332 2444566665555555
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=86.98 E-value=1.2 Score=36.42 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...++.++|+..+....+|+.+|..+...++..+.....++.|++.+-+.|+..=-+++.|+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elR 68 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELR 68 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35567788888888888888888888888888888888887777777776666555555444
No 18
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.82 E-value=5.4 Score=33.25 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.++.++..+..+..+..+....|.+.+..|+.+|..++.++
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333333334444444444444333
No 19
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.78 E-value=4.8 Score=33.09 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=46.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
-+||.-|+..=.-++-++.+|...+..+...+.+..+.+..|.+|..++..++.++-.|+
T Consensus 13 leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 13 RELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777776666667777888888888888888888888888888888888888776654
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.64 E-value=3.9 Score=31.49 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
.....|..++..+...|.+|+.++..|+.++..++.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555544443
No 21
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=86.44 E-value=4.2 Score=38.44 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=8.8
Q ss_pred chhhHHhHHhhhhc
Q 013627 285 PSFAQLYHSLTKQV 298 (439)
Q Consensus 285 P~vveLY~sLk~K~ 298 (439)
+.+..+|..++++.
T Consensus 175 ~~lL~~Yerir~~~ 188 (256)
T 3na7_A 175 PKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 45667777776644
No 22
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=86.41 E-value=7.5 Score=32.07 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
...-+..-..+..+...|...|..|+.++..|+.++..++.-+.++++
T Consensus 31 R~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 333334444555566666666666666666666666666666655553
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.33 E-value=2 Score=45.78 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchh
Q 013627 170 ELEKQNKKLVEDLVAAEAKIASLSSR 195 (439)
Q Consensus 170 ELEkEnkELr~ELa~aeaQI~sL~s~ 195 (439)
+|++.+.+|+.+|..--.+|..|++.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665444556555543
No 24
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.93 E-value=8.7 Score=32.94 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhc
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEK-----------QNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEk-----------EnkELr~ELa~aeaQI~sL~ 193 (439)
.+..+|.+|+..|..|..|+..++.++..||. +...++..+..++.++..++
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444444555454444444444444 34455555556666665555
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.55 E-value=6.5 Score=40.21 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFA------------------LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELea------------------LkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
......|++++...+..++.++.+++. +.+++...+++.+.+++++.++++++...+.++.
T Consensus 462 ~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 466777777777777777766666643 3344455555555555555555555544444443
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.38 E-value=7.5 Score=33.51 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkEL 178 (439)
++++...+..+.+..|+.+|..|+.....++...-+||..|-.|
T Consensus 25 K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 25 KLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 33333333333344444444444443333333333333333333
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.22 E-value=6.6 Score=33.83 Aligned_cols=63 Identities=29% Similarity=0.309 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA-------ELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNe-------ELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+++|+++.......+.+|+.+|.+-+..+....++.. +|+.+++++...+...+.+...|.
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~ 103 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELT 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777665544444333333 344444444444444444444443
No 28
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=84.11 E-value=1.7 Score=34.56 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+..|++|+.++..|..+...+...|..|..++..|..++
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444444444444444433
No 29
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.66 E-value=2 Score=32.41 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+++++|+.|+..++.+++.|..++.+|+.+|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544
No 30
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=83.64 E-value=4.2 Score=33.20 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHhhh
Q 013627 207 PKFKDVQKLIANKL 220 (439)
Q Consensus 207 ~~~KkIQklia~~l 220 (439)
..||.+...+++|+
T Consensus 48 ~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 48 AEVGRAAQLLDVSL 61 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 35777777777764
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.41 E-value=3.5 Score=31.24 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+..|..++..+...|..|..++..|+.++..++..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 32
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=82.92 E-value=13 Score=28.93 Aligned_cols=64 Identities=5% Similarity=0.058 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHH----hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 130 DKKKKEFEEKLML----SENLVK-DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 130 ~~~k~eLqEkLe~----sEnlIk-eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+|..++...-+. +..+.. -++.+++.++......-+.......|+.+|+.+++.++.+|.+++
T Consensus 8 ~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566666544332 222222 234666666666666555555556688888888888888886664
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.85 E-value=8.3 Score=33.20 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=28.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhch
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk----EnkELr~ELa~aeaQI~sL~s 194 (439)
+.+.+....++.|+.+|++++.....|.....++|. +...++..|..++.++..++.
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555444444444444443 455555566666666655553
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.70 E-value=6.4 Score=39.55 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
++.+..++-....|+++...+...+.++++++.+.++++.+++++.++..+++.+.+.+..+..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 4444455555556666666666667777777777777888888888888888877777765554
No 35
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.67 E-value=3.8 Score=31.55 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ 180 (439)
+|+.++..|..++..|..+...|+.|+..|++
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 36
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.60 E-value=7.6 Score=29.33 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+..++...+.|+.+|..|..++..+..++..|+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555544443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.36 E-value=6 Score=40.45 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+.+.++..+...+.++.++..++++....++..+.+++|+.+++.++...+.++..++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 444444444444444444444555544444444444444555555555555544444443
No 38
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.94 E-value=11 Score=27.88 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
.+..+++.+...+..+..++.++..++..+..+.+.......++.++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555554444444444444444433
No 39
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.72 E-value=12 Score=29.68 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..+........++.++...........+....|.+.+..|+.+|..++..+
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444555555555544444
No 40
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.59 E-value=15 Score=29.23 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
..||...+........++..+..++.....++..++.++..|+..++.++.++.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555553
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.26 E-value=15 Score=32.15 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVF-----------ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELe-----------aLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
++..-|+.+|..++....+.+.+.. .|.++...-+.+..+|+-||+.|.++|+.+.+++-.|+.
T Consensus 25 N~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 25 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667778888888766665553332 344444445566777888888888888888888877775
No 42
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=81.20 E-value=5.3 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 151 qSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
+..+..|..++..|...|..|..++..|+++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 43
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=81.12 E-value=5.1 Score=32.20 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHhhh
Q 013627 165 QSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKL 220 (439)
Q Consensus 165 qerNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~~l 220 (439)
.++..++|.+|.+|+++|..++.++..-+. .-++....+|.+...+++|+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~------~q~~~~~Elk~~~e~Ld~KI 55 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQS------EQDAFRSNLKTLLEILDGKI 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhHH
Confidence 344445555555555555555555532221 11223346777788777765
No 44
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.86 E-value=14 Score=30.06 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 128 ~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
|.|+.+..|+|.+...+.+++.|+.==+.|++=-..+..-..+|++|..+|+..+..++.+...|.
T Consensus 8 VeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 8 VSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888887777555555555556666777777777777777777776654443
No 45
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.74 E-value=11 Score=34.58 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALK 158 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLk 158 (439)
.+|++++...++....|+.++..|+
T Consensus 51 rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 51 RELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 46
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=80.25 E-value=13 Score=33.41 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+++|+++.+-..+-+.++++|++....++..+..|..|+.-++..+..+..++
T Consensus 31 qeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 31 QEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444444444444444444444444444333333344444444333
No 47
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.21 E-value=11 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
+..|..++..+...|..|..++..|+.++..+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 48
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.01 E-value=6.2 Score=30.20 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 160 ElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+..|+...+.|+.+|..|..++..+..++..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444
No 49
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.85 E-value=3.3 Score=42.01 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+..|+++|+..++.+.+|+.++..+..++..+.++..+.+.+.+.|..+++.+++.|
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 345666666666666666666666666666666555555555555555555555444
No 50
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=79.66 E-value=5.4 Score=32.13 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
|+++|+..|..+...+.-|+.|+..+...+..++.|++++..|.+++..+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444444444444555555444444444433
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.55 E-value=13 Score=34.68 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
+..|+.+|..++.....++...-+||..|-.|.........
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~ 130 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIM 130 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 44444444444433333333333333333333333333333
No 52
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.09 E-value=14 Score=30.64 Aligned_cols=6 Identities=50% Similarity=0.545 Sum_probs=2.4
Q ss_pred hHHHHH
Q 013627 130 DKKKKE 135 (439)
Q Consensus 130 ~~~k~e 135 (439)
+.||++
T Consensus 5 daIKkK 10 (101)
T 3u1c_A 5 DAIKKK 10 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 53
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=79.04 E-value=20 Score=29.22 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..-+|.++|+.|+.|+..|...++++..++..+..+-..+=..+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666665555555555555555555555444444333
No 54
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=78.48 E-value=15 Score=27.16 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=29.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
+.+...+....+...++.....++..++...+++...+...+..+..++.||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555566666666666655555566666665555553
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.10 E-value=2.3 Score=33.91 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=20.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLqerNeELEkE 174 (439)
-|..+-+.|+.|+.++..+..+++.+..++..|+.+
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666655555554444444443
No 56
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=77.25 E-value=16 Score=29.46 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 166 SLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 166 erNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+..+|+.||..|+.+|..++.++..|+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444443
No 57
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=77.03 E-value=2.9 Score=31.83 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+..++.....|+.+|..|..++..+..++..|+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555554
No 58
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.51 E-value=9 Score=28.83 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013627 155 FALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 155 eaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s 191 (439)
..++.++..+..+|..|..-.++.+++|..++++|..
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555543
No 59
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.22 E-value=10 Score=28.13 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
|+.++..|++.+-++.....-||+=+..|+.++++++.++.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666555555555566666667777777666654
No 60
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.05 E-value=9.6 Score=43.44 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeE 170 (439)
.++.++..|.+|+..+.+.+..
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333333
No 61
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=75.50 E-value=20 Score=32.81 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=39.4
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ-------SLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq-------erNeELEkEnkELr~ELa~aea 187 (439)
-+..+.-++++++=.+.....+.+|+.++...+.|+..+. .....|.+|+.+|++++...+.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777765 2444455555555555544443
No 62
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=75.41 E-value=22 Score=30.55 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhchh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA-------ELEKQNKKLVEDLVAAEAKIASLSSR 195 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNe-------ELEkEnkELr~ELa~aeaQI~sL~s~ 195 (439)
...++|.++|.-.+...++|+.+...+..+...++.+.. +.+.-...|..+-..++.+|+.+..+
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~r 91 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKR 91 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777776666666655555443322 22223344444444555555555443
No 63
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.34 E-value=11 Score=32.23 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.|.=+++-|+..++.+.+.+.++.+|+.+...++.+.+..+
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~ 67 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAH 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444333333
No 64
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.30 E-value=6.8 Score=29.77 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..+..|..++..+...|..|..++..|+.++..++..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555554443
No 65
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.11 E-value=4 Score=28.59 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 158 KAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 158 kkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+.++...++..++|+++|..|+.|+..+
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 4455555666666666666666666543
No 66
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.10 E-value=15 Score=34.60 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
+-++.|+-+++..+..+..++.++..+..+++.++...+.++.+...++.++..++
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444444444444444444444444444444443333
No 67
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.69 E-value=8.5 Score=30.97 Aligned_cols=49 Identities=6% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
...+|++-|....+++...+. .+..+..+..+++.++.+|+.+|..+++
T Consensus 20 ti~eLq~~L~~K~eELr~kd~-------~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDA-------LIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666666555554444443 3444455556666677777777766543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.44 E-value=16 Score=36.69 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=40.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
++...+..+++.++++.+.+.+..+.+..+++.+.|++|+..++..+..+..++....
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 4455555666666777777777777777777777777777777777777777775444
No 69
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.19 E-value=28 Score=28.82 Aligned_cols=8 Identities=13% Similarity=0.127 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q 013627 136 FEEKLMLS 143 (439)
Q Consensus 136 LqEkLe~s 143 (439)
|+.+|...
T Consensus 9 l~~eL~~l 16 (96)
T 3q8t_A 9 LQRELKEL 16 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 70
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=73.77 E-value=6.7 Score=31.92 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=28.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkEL 178 (439)
=|..+-..|+.|+.+...+..++..++.+|..|..++.+|
T Consensus 46 iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667888888888888777777776666666665554
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=73.48 E-value=21 Score=32.75 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...+.+|+..+.+|..|+..+..+...++.+++.|...|..++-..+++.
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556777777788888888777777777777777777777776655444
No 72
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=73.27 E-value=12 Score=27.24 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
...+|+.+...|...+..|.++...|+.||.=|++-|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3456666666676667777777777777777776654
No 73
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.20 E-value=36 Score=27.61 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=40.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..+.|...+..++.++..+.........+...+..|..+...|..+++.++..+..|..
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~ 70 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLS 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566666667777777777666666667777777777777777776666666655554
No 74
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=73.05 E-value=21 Score=29.29 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 156 aLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
++.+++.....+|.+|+.|+..|+.++..+
T Consensus 42 ~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 42 NFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555443
No 75
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=72.63 E-value=6.1 Score=40.35 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=30.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..|+++|+..+..+++|+.++..+..++..+.++..+.+.+.+.|..+++.++..|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 45555555555555566655555555555555555554445555555555554444
No 76
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=72.62 E-value=13 Score=30.08 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=23.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
.|+|+++..++.++-|+.++..|..|+...+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888777766644
No 77
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.47 E-value=19 Score=29.28 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..|+..+.+...-+-.++.++++|+.|+..|+|++....-++..+..
T Consensus 9 ~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 9 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444444444445667778888888888888888888888876664
No 78
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.45 E-value=7.9 Score=41.29 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+|+..+..|+.++.....++.-|+.-+.++..++++||-.|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777766666777776777777777777666
No 79
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.28 E-value=13 Score=31.91 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013627 170 ELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 170 ELEkEnkELr~ELa~aeaQI~ 190 (439)
.++..+..|+.+|..++.++.
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 344566666666766666663
No 80
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=71.54 E-value=54 Score=29.57 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhHHHHH
Q 013627 132 KKKEFEEKLMLSENLVK 148 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIk 148 (439)
...+|++.|..+.+-++
T Consensus 43 k~~eLEeeL~~v~~nlK 59 (155)
T 2efr_A 43 KSAELEEELKTVTNNLK 59 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33445555555444444
No 81
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.83 E-value=37 Score=29.19 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFAL-----------KAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaL-----------kkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+...+|+.+..-...++..|+.++... +.|+..++..+..|...+.+|++.-+.++.+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 566788888888888888877666654 4444445555555555555555554444443
No 82
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=70.76 E-value=9.6 Score=30.18 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+-+..|+..+..|+.++.+|+.+...++.++.+|.+
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566777788888888888888888888888877653
No 83
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=70.29 E-value=40 Score=27.70 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
..+..|+.++..+..++..++.+..+......+-......+++++.+|
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333334444444433
No 84
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=70.29 E-value=5.9 Score=28.93 Aligned_cols=44 Identities=34% Similarity=0.320 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.|+++|.++++|= =.-+...-||.|.+-|+.+++.+++++..|+
T Consensus 4 alkselqalkkeg-fspeelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 4 ALKSELQALKKEG-FSPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666441 1223444556666666666666666655443
No 85
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.24 E-value=23 Score=30.95 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~E 181 (439)
+++|+.+|..|+.++.......++|.+++..|...
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 44444554444444444444444444444444333
No 86
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.17 E-value=28 Score=29.40 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
-...+.++|...+.....+..++..|..++..-+.+-...|++...+.++|..+-+.+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777766666666777777777776666554
No 87
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=70.03 E-value=10 Score=30.46 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.-+.+|+.+|.-...-++.|.+...+.++++..|+.++..+..++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444
No 88
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.45 E-value=9 Score=30.41 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..|..|..++..+...+..|..||..|+.++..+..++
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444545554444444443
No 89
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=69.36 E-value=45 Score=28.45 Aligned_cols=59 Identities=7% Similarity=0.146 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+-|..|.=.++.-...+.+++..+..++.|+.......+.+.+.+..|+.++..++.+|
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444555555555555555544444445555555556666666555
No 90
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.83 E-value=30 Score=31.34 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
-..+..+|..|+++.++-+.-|..+..|+..|+.
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666777777777777777777776664
No 91
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=68.78 E-value=22 Score=34.01 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
..|..||.-|..++....+....|+++|+.++.|...+..+..+-.++..++++++++.-
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345689999999999888888888888888888877777777666666666666665543
No 92
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=68.41 E-value=38 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK-----AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElek-----LqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.+-+++|.+..+-.=..+.+||-=++.|++.+.. ...+.+.+.+++..+..+|..++.-|...+.
T Consensus 13 ~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP 82 (141)
T 3okq_A 13 EKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKP 82 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4567778877777777778888888888877765 4556666666777777777777777655553
No 93
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.38 E-value=37 Score=30.74 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=6.2
Q ss_pred HHHHHHHHhHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQ 151 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLq 151 (439)
.|+..+...+..|.+|+
T Consensus 72 ~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 94
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.35 E-value=41 Score=28.46 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElek 163 (439)
...|.++++..+.++..|+.+++.|..++..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444444433
No 95
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.11 E-value=4.1 Score=39.61 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.+..+..++..+..+|..|..+.++++.+|..++.++..|.+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355666777777777777777777777777777777765554
No 96
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=68.02 E-value=13 Score=37.00 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.++|.+++...|.++.....+|..|+..+. .++.++.+|+++|..++..+
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~-------~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWR-------VNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444443 34444444555555554443
No 97
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.57 E-value=23 Score=26.58 Aligned_cols=37 Identities=22% Similarity=0.124 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+|+.++..|.+.+..|.+.+.+...|+..|+++|+.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666656666666666543
No 98
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=67.13 E-value=33 Score=29.70 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013627 176 KKLVEDLV 183 (439)
Q Consensus 176 kELr~ELa 183 (439)
..|+.++.
T Consensus 71 e~Lr~e~~ 78 (120)
T 3i00_A 71 EFLRAELD 78 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 99
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=67.00 E-value=21 Score=26.35 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
+++|+++..++..+-|+.++..|..|+...+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq 32 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQ 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888777766644
No 100
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=66.72 E-value=13 Score=37.70 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhHhhHHHHh
Q 013627 395 ADAMREAAVEYRDLKQLENEI 415 (439)
Q Consensus 395 ~dalReAa~~Y~~L~~l~~e~ 415 (439)
-+.|+||..-=..|..|..=+
T Consensus 314 g~rl~E~~~INkSL~aLg~vI 334 (403)
T 4etp_A 314 GDRLRETQNINKSLSALGDVI 334 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 367888887666665554433
No 101
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=66.12 E-value=13 Score=30.04 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
.+......-+.....+..++..|...|..|+.++..|+.++..++.-+.++
T Consensus 26 AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444444455666777788888888888888888888888888766544
No 102
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=65.70 E-value=50 Score=27.29 Aligned_cols=40 Identities=28% Similarity=0.257 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
|+.+|..+..+=..+.+....|+++...+..+|..++.+.
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444434444444444444444444444444433
No 103
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=65.53 E-value=33 Score=29.25 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+|+..++.+.+|...++.........+.+|..+|.++..+-..|.
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655555566777777777666655444
No 104
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.45 E-value=13 Score=31.92 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhch
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV----AAEAKIASLSS 194 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa----~aeaQI~sL~s 194 (439)
+.|..+..+|.+|+..|..|..|+..++.++..||..+.++++.+. .+...|..|..
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~ 91 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEE 91 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677788888888888888888888888888888777776543 44455555544
No 105
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=65.34 E-value=39 Score=29.62 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
|+.+++.....+..+..+...|..+...|...|++|+.++++++.+++.+
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333334444444444555555555555555555444443
No 106
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=65.20 E-value=24 Score=28.45 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 127 GLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 127 ~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
|--....+-|++.|...+.+|..|+.-+.--.+..+.|-...-.|.=||.-|++.+..++
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 333457778899999999999888876665555555544444444446666666665544
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.08 E-value=26 Score=44.59 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=35.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.+++|...++.+++++.+|+.|+++++......+.|+.+....+.+|.+++.=|..|.+
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34445555555555556666666666666666666666666666666666666666654
No 108
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=64.68 E-value=75 Score=28.54 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFAL-------KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaL-------kkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
..+..|++-++..+++..+.+.+|+-. +..+.+++.+|.-.++|+..|+.++..+...+.
T Consensus 11 ~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 11 DEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence 456788888888888888888777632 234556777777777777777777776666553
No 109
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=64.52 E-value=18 Score=41.31 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
.+++++|+..+..+.+++.++..+..+...++
T Consensus 867 ~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 867 QRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444433
No 110
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.03 E-value=34 Score=35.19 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 013627 170 ELEKQNKKLVEDL 182 (439)
Q Consensus 170 ELEkEnkELr~EL 182 (439)
+||+++.+|+..|
T Consensus 117 eLe~~i~~lk~~V 129 (390)
T 1deq_A 117 DLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 4455444444444
No 111
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=64.00 E-value=13 Score=29.80 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=25.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkE 174 (439)
.-|..+-..|+.|+.+...+..+.+.++.++..|..+
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888777777766666555555544
No 112
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=63.45 E-value=14 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
.+++.++..|++|+.++..|..+++.++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 113
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.42 E-value=22 Score=29.96 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
..|...|...++....-+.+|+.|+.++.++....+. +.-|++|+...+..+.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~----i~vLk~Qv~IY~~DF~ 57 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----VPVLKAQADIYKADFQ 57 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4677777877777777777777777766665543333 3346666666666664
No 114
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=61.71 E-value=58 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
++.+|..|...+.....+.+..++.+..|+.++..++.
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd 112 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333
No 115
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.17 E-value=39 Score=35.40 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013627 170 ELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 170 ELEkEnkELr~ELa~aeaQI 189 (439)
+|-.+.+.|..++..++.++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554444
No 116
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=60.46 E-value=66 Score=34.19 Aligned_cols=79 Identities=25% Similarity=0.245 Sum_probs=44.1
Q ss_pred ccccCCCCccccCcchHHH--------HHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 115 RIVDANPGKIEDGLMDKKK--------KEFEEKLMLSENLVKDLQS-------EVFALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 115 ~~~~~~~~~~~~~~d~~~k--------~eLqEkLe~sEnlIkeLqS-------ELeaLkkElekLqerNeELEkEnkELr 179 (439)
+--+.+|++.||-.+++.+ ..|.+.|....++|..+++ ++.+...|.....+....++++...++
T Consensus 325 ~~~~~~~~~~~~ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~ 404 (602)
T 1cii_A 325 ILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIR 404 (602)
T ss_dssp TSCCCCSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcchhhhhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455577766665555433 2344566666666555554 444555555555555555555666666
Q ss_pred HHHHHHHHHHhhhc
Q 013627 180 EDLVAAEAKIASLS 193 (439)
Q Consensus 180 ~ELa~aeaQI~sL~ 193 (439)
.++...+.++.+-+
T Consensus 405 n~~a~~~~KiAE~K 418 (602)
T 1cii_A 405 NQLSGINQKIAEEK 418 (602)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHH
Confidence 66666666655444
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.90 E-value=41 Score=28.44 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.+..|+.+|+.|..|...|.++++.||-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 118
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.80 E-value=26 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
+..+..|.++++..+..|+.|+.++..+.+++..++.....
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888888777777776655443
No 119
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.70 E-value=16 Score=30.07 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 158 KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 158 kkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+.....++.+..+|+.||..|+.+|..++.++..|+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777888888888888888888777765
No 120
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=59.61 E-value=44 Score=30.04 Aligned_cols=41 Identities=7% Similarity=0.166 Sum_probs=30.9
Q ss_pred ccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013627 123 KIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (439)
Q Consensus 123 ~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElek 163 (439)
+|-+.......++|++.+...+.++++|+-+...+-+|+..
T Consensus 21 iVTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~ 61 (150)
T 4dci_A 21 VVTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRR 61 (150)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556778888888888888888888888877777664
No 121
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=59.45 E-value=17 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 162 VKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 162 ekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
..++.+.+.||+.+.-|+++|+.+.+++.+|
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455577777777777777777777777655
No 122
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.71 E-value=61 Score=27.33 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+..|+.++.....++..|+....+-...-...+.+....+..+-.|.
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444333333333333333333333333333333443333333
No 123
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=58.54 E-value=82 Score=26.55 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 013627 146 LVKDLQSEVFA 156 (439)
Q Consensus 146 lIkeLqSELea 156 (439)
.+++|+.++..
T Consensus 30 ~k~eL~~~~~~ 40 (107)
T 2no2_A 30 EKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 124
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=58.06 E-value=25 Score=35.02 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.|..++..+...+.....+...|+..+..++.+|+.++.+|..|.
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455555555555444443
No 125
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.80 E-value=75 Score=25.82 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVK 163 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElek 163 (439)
.++.++|....+.+..+++++..+...+..
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554445555555555544444433
No 126
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=56.38 E-value=8.8 Score=31.22 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVE 180 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ 180 (439)
++-|++.+..|.++|.+||.||.-|++
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666665543
No 127
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=56.31 E-value=52 Score=37.52 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.+++++|+..+..+..++..+..+..++..++++..+++.
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=55.69 E-value=13 Score=36.11 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+..++.++..|..+|.+|..++..++.+|..|+.
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555553
No 129
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=55.55 E-value=44 Score=27.54 Aligned_cols=15 Identities=13% Similarity=0.054 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 013627 161 FVKAQSLNAELEKQN 175 (439)
Q Consensus 161 lekLqerNeELEkEn 175 (439)
+...++.++.||.++
T Consensus 53 l~~h~~ei~~le~~i 67 (84)
T 1gmj_A 53 ISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 130
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.93 E-value=36 Score=35.65 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013627 171 LEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 171 LEkEnkELr~ELa~aeaQI~ 190 (439)
|-.+.++|..++..++.++.
T Consensus 76 l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554443
No 131
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.22 E-value=79 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.+..|.|..-..|.++..|+.++..|+..++.......+|-.
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~ 46 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGR 46 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666666666666554444444433
No 132
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=54.04 E-value=33 Score=35.30 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013627 171 LEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 171 LEkEnkELr~ELa~aeaQI 189 (439)
|-.+.++|..++..++.++
T Consensus 74 l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555444444
No 133
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=53.39 E-value=13 Score=32.32 Aligned_cols=52 Identities=15% Similarity=-0.005 Sum_probs=32.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
.+++..+...++...|...-..+.+.++.+++.+.+|++++..|+.++...+
T Consensus 8 ~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 8 AVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433345667777777778888888888888876654
No 134
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.15 E-value=64 Score=23.60 Aligned_cols=40 Identities=33% Similarity=0.311 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
.++++..|+++-+.|++..---+....-||+|+..|+.++
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3555556666666666555555556666666666666554
No 135
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=53.03 E-value=18 Score=27.85 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..+..|..+...|+.+|..|..++..+..++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666554
No 136
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=52.90 E-value=82 Score=27.91 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 129 MDKKKKEFEEKLMLSENLVK-------DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 129 d~~~k~eLqEkLe~sEnlIk-------eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
|+..+..|+.+|.++....+ +...+|..+..++....++....+..+.+|..+|...-..+.+|..
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34455555555555554443 2334455566666777777777777777777777777777766665
No 137
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=52.44 E-value=69 Score=25.04 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013627 157 LKAEFVKAQSLNAELEKQNKKL 178 (439)
Q Consensus 157 LkkElekLqerNeELEkEnkEL 178 (439)
+..|+..++.....|+.||..|
T Consensus 39 ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 39 LSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhh
Confidence 3344444444444444444333
No 138
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.09 E-value=31 Score=32.31 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS 191 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~s 191 (439)
+..|..|+..|.++++..+.|++.|+.+|+.++.++..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34555666666666666666777777777777776643
No 139
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.60 E-value=21 Score=24.97 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKL 178 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkEL 178 (439)
.+.+..+.+++++.++.+|..|+.|+.-|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 45566677777777777777777776544
No 140
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=51.52 E-value=19 Score=28.48 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
..+-.++++.|...+..|.+|+..|.....++..|+.+++.
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666655555554444443333
No 141
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.21 E-value=93 Score=26.37 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNe 169 (439)
..+.+|+.+|+........|..++..++..++.++.+.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 567788888888888888888888877766666655544
No 142
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=51.18 E-value=57 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
....+-|.+-|++++. |...+..+++|+..+++.|.+|..
T Consensus 27 E~Rr~AL~eaL~EN~~----Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 27 EQRRKALYEALKENEK----LHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666555 445566667777777777776655
No 143
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=51.08 E-value=29 Score=31.24 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 157 LkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
+...+.........++.++..|+.++..++++...|
T Consensus 71 l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKL 106 (146)
T 2xnx_M 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKL 106 (146)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333333344444444444444444444443333
No 144
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.99 E-value=32 Score=28.61 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013627 174 QNKKLVEDLVAAEAK 188 (439)
Q Consensus 174 EnkELr~ELa~aeaQ 188 (439)
|+..+..+++..+..
T Consensus 70 e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 70 EVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 145
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.73 E-value=66 Score=24.20 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQS 166 (439)
Q Consensus 149 eLqSELeaLkkElekLqe 166 (439)
+|.+++..|..++..|+.
T Consensus 8 ~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 8 QASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 146
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.35 E-value=32 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLN 168 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerN 168 (439)
+..+..|.++++..+..|+.|+.++..+.+++..++...
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888888877777766544
No 147
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=49.96 E-value=1e+02 Score=32.55 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
..+-.++||+++.+|+..|..--..|..|+.
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~ 139 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVNRIKALQN 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666666433355555554
No 148
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.67 E-value=57 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+..+..++..+..+...++.++..|+.++
T Consensus 73 l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 73 LNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 149
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=48.22 E-value=1.1e+02 Score=30.41 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+...+..|++++.+++..+..++.|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHh
Confidence 34444555555555555555555544
No 150
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=47.90 E-value=50 Score=42.10 Aligned_cols=12 Identities=0% Similarity=-0.158 Sum_probs=7.2
Q ss_pred CcccHHHHHHHH
Q 013627 391 PEKKADAMREAA 402 (439)
Q Consensus 391 PekK~dalReAa 402 (439)
+++-++.+...+
T Consensus 2528 ~~~~w~~i~~L~ 2539 (3245)
T 3vkg_A 2528 STTQQKWLICLR 2539 (3245)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555566666655
No 151
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=47.09 E-value=1.2e+02 Score=26.37 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013627 167 LNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 167 rNeELEkEnkELr~ELa~a 185 (439)
....|+.+|..|+.++..+
T Consensus 58 ~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 58 AKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 152
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.99 E-value=63 Score=26.20 Aligned_cols=15 Identities=0% Similarity=-0.155 Sum_probs=6.0
Q ss_pred HHHHHHHHhHHHHHH
Q 013627 135 EFEEKLMLSENLVKD 149 (439)
Q Consensus 135 eLqEkLe~sEnlIke 149 (439)
.|..++...+..+++
T Consensus 24 ~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 24 LVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 153
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=46.54 E-value=96 Score=23.72 Aligned_cols=36 Identities=33% Similarity=0.312 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
.+....|+.++...++++.-+..+++.+.-+++.+.
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~ 40 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSI 40 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355667888888888888766667776666666654
No 154
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=46.44 E-value=1.3e+02 Score=25.41 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.|+.+|..-..|+..++...+.++.+...+..++..+...-
T Consensus 58 ~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek 98 (107)
T 2no2_A 58 SLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKER 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555554444443
No 155
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.30 E-value=40 Score=27.69 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 161 FVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+..++.+.+.+..++..|..++..+...+
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444333333
No 156
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.28 E-value=1e+02 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFV 162 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkEle 162 (439)
.+-+|+..+..|..|+.++..|..++.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666777777777766666654
No 157
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=45.79 E-value=38 Score=34.75 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=4.6
Q ss_pred HHHHHHHHHhHH
Q 013627 134 KEFEEKLMLSEN 145 (439)
Q Consensus 134 ~eLqEkLe~sEn 145 (439)
.+|+.-|++.++
T Consensus 41 ~~LE~~l~elsn 52 (409)
T 1m1j_C 41 LEIEGLLQQATN 52 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334333333333
No 158
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=45.20 E-value=24 Score=26.41 Aligned_cols=24 Identities=42% Similarity=0.466 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~aea 187 (439)
|..+...|+.||..|..++..+..
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555544444443
No 159
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.01 E-value=45 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 157 LKAEFVKAQSLNAELEKQNKKLVE 180 (439)
Q Consensus 157 LkkElekLqerNeELEkEnkELr~ 180 (439)
|...++.|...|.+|+.|+..|++
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334444555555555555555543
No 160
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=44.88 E-value=57 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.408 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 169 AELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 169 eELEkEnkELr~ELa~aeaQI 189 (439)
..||.++..|..++..+..+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 161
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=44.73 E-value=1.4e+02 Score=25.07 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
=|+.++.-....|..=...=+.+..++.+|..++..+..++..|..
T Consensus 44 vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 44 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333334444566666666666666655543
No 162
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.61 E-value=1e+02 Score=32.16 Aligned_cols=15 Identities=0% Similarity=0.184 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhHH
Q 013627 131 KKKKEFEEKLMLSEN 145 (439)
Q Consensus 131 ~~k~eLqEkLe~sEn 145 (439)
+..++|+..|+..++
T Consensus 100 ~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 334556666665554
No 163
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.60 E-value=1.3e+02 Score=31.58 Aligned_cols=13 Identities=0% Similarity=0.158 Sum_probs=6.4
Q ss_pred hhHHHHHhcchhh
Q 013627 319 SSIVGEIQNRSAH 331 (439)
Q Consensus 319 ~~mIgEIenRSa~ 331 (439)
.+-|--|++.-.|
T Consensus 300 le~ih~LT~~~~~ 312 (464)
T 1m1j_B 300 NDKISQLTKIGPT 312 (464)
T ss_dssp HHHHHHHHTTSCE
T ss_pred ccceeeccCCCCE
Confidence 3445555554444
No 164
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=44.43 E-value=21 Score=31.31 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSR 195 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s~ 195 (439)
++|+.|...|+.++-.+..+..+.+. .-+.++..+++.+..+|.+|+..
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~--~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAA--DKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCT--THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444443322110 02444555555555555555543
No 165
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.10 E-value=47 Score=33.76 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013627 170 ELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 170 ELEkEnkELr~ELa~aeaQI~ 190 (439)
+|-.+.+.|..++..++.++.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~ 88 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALR 88 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554443
No 166
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=43.65 E-value=1.2e+02 Score=25.08 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAE 160 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkE 160 (439)
.|-.+|+|.++-.+-.|+.|..+|....+|
T Consensus 22 G~~~~lrq~I~DKQ~~i~~Lt~eLq~A~~e 51 (90)
T 4b6x_A 22 GAGAALRQEIEDKQLMVNNLTDELQDAIDE 51 (90)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667788888888888888888888876644
No 167
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=43.43 E-value=1.1e+02 Score=25.15 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=36.5
Q ss_pred ccCcchHHHHHHHHHHHHhHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 125 EDGLMDKKKKEFEEKLMLSENLV-KDLQ--SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 125 ~~~~d~~~k~eLqEkLe~sEnlI-keLq--SELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.|..|+.+-.++++..+.-...| ++|+ .-.+.|.+=.......-...+.+.+....+|+.++.++..|.+
T Consensus 12 ~~~~d~~~q~~le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 12 ADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46777877777765555444444 4444 2233333332222233344555666666666666666655543
No 168
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=43.24 E-value=48 Score=26.75 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKA 164 (439)
Q Consensus 148 keLqSELeaLkkElekL 164 (439)
..|+++|.+...|+..|
T Consensus 21 ~~Lr~eL~~Ke~eI~~L 37 (75)
T 3a7o_A 21 AILQKELKSKEQEIRRL 37 (75)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 169
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.18 E-value=89 Score=25.23 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNe 169 (439)
.+|+.+++........+..++..++..+..++...+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777776666555554443
No 170
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=42.93 E-value=50 Score=23.42 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAEL 171 (439)
Q Consensus 153 ELeaLkkElekLqerNeEL 171 (439)
+|+...+|+..+++.|.+|
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3444445555555555554
No 171
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.89 E-value=90 Score=32.67 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 013627 175 NKKLVEDLVAAEAKIA 190 (439)
Q Consensus 175 nkELr~ELa~aeaQI~ 190 (439)
.+.|..++..++.++.
T Consensus 113 ~~~l~~~i~~le~~~~ 128 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQ 128 (484)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555554443
No 172
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=42.83 E-value=1.1e+02 Score=26.17 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
++|=.+--.|.+.+..+.+.|..|+...+....++..++.+|-.|+.
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 34444455566666666666666666666666666666666666664
No 173
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.75 E-value=60 Score=23.99 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 156 aLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
-|++.+..++..|-+||+.-+.|+.-++.++-+|..|.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 46788888888899999888888888888888887665
No 174
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=42.73 E-value=58 Score=23.01 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
+..|+..+....++--.||.+|+.|+.++
T Consensus 8 mq~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 8 LQELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555544
No 175
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=42.62 E-value=1e+02 Score=26.67 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=53.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhh
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQ----------SLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKF 209 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLq----------erNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~ 209 (439)
|...++.+.....+|+.+.+++...+ +....|++.++...+++...-.++.++.-..+-..+..+.-.+-
T Consensus 13 L~~veksv~~~~kkl~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~~~~R~kRK~lV 92 (114)
T 1hx1_B 13 LKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLV 92 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHH
Confidence 44445555555555555555555433 34455677888888888888888877765554444555555567
Q ss_pred HHHHHHHHh--hhhccc
Q 013627 210 KDVQKLIAN--KLEHSI 224 (439)
Q Consensus 210 KkIQklia~--~le~s~ 224 (439)
++||-+++. +|+...
T Consensus 93 ~~iQ~~l~~cD~l~~~i 109 (114)
T 1hx1_B 93 KKVQAFLAECDTVEQNI 109 (114)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 888887664 555543
No 176
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=42.51 E-value=1.5e+02 Score=24.86 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013627 170 ELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 170 ELEkEnkELr~ELa~aeaQ 188 (439)
.|..+-..|..+|..+..+
T Consensus 75 ~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 75 LLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555556555544
No 177
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.21 E-value=36 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKA 164 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekL 164 (439)
-|++....|..|+.+|.+|++|..++
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777776553
No 178
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.00 E-value=51 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
|.+|-++++-+-++|..-+.+|..+++.+..|.
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666555555544443
No 179
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=41.99 E-value=91 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 166 SLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 166 erNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+.+++-..++..|..++...+..+..|+
T Consensus 38 ~k~E~~k~qV~~L~~~~q~sE~~L~~Lq 65 (112)
T 1x79_B 38 QSSEDSSHQISALVLRAQASEILLEELQ 65 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455566666655555554444
No 180
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=41.72 E-value=1e+02 Score=24.13 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL 192 (439)
++.-|.+-...+.++++-|..|..|...++.++..+.+.-+.|
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 3444555556666666666666666666666666665554443
No 181
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=40.90 E-value=29 Score=26.79 Aligned_cols=57 Identities=30% Similarity=0.326 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 013627 134 KEFEEKLMLSENLVKDLQ--SEVFALKAEFVKAQSLNAELEK--QNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLq--SELeaLkkElekLqerNeELEk--EnkELr~ELa~aeaQI~ 190 (439)
+-|+|+....+..++.|- ..++.|++.-+.++...++|-- |.+.++.++..++..|.
T Consensus 5 kaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 456666666665555443 3445555555555555555543 66666677776666653
No 182
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=40.84 E-value=42 Score=22.86 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 013627 174 QNKKLVEDLVAAE 186 (439)
Q Consensus 174 EnkELr~ELa~ae 186 (439)
||-.|++++++++
T Consensus 16 enyqleqevaqle 28 (33)
T 1fmh_A 16 ENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 3333334444443
No 183
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.81 E-value=1.8e+02 Score=25.10 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013627 162 VKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 162 ekLqerNeELEkEnkELr~E 181 (439)
..++.++.+||.|+.+-+++
T Consensus 43 ~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 43 LQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455444444433
No 184
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=40.78 E-value=58 Score=23.02 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 160 EFVKAQSLNAELEKQNKKLVE 180 (439)
Q Consensus 160 ElekLqerNeELEkEnkELr~ 180 (439)
.+++|...+.+|+.|+..|++
T Consensus 9 KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 9 KVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333334444444444444433
No 185
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=40.69 E-value=88 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFAL 157 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaL 157 (439)
....+++..|++++.++.++.-++..+
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778889999999998888777654
No 186
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.21 E-value=43 Score=23.28 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr 179 (439)
..++.+...|.+|+.|+..|+
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 334444444555555444443
No 187
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.96 E-value=1.2e+02 Score=22.83 Aligned_cols=23 Identities=0% Similarity=-0.159 Sum_probs=9.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 013627 141 MLSENLVKDLQSEVFALKAEFVK 163 (439)
Q Consensus 141 e~sEnlIkeLqSELeaLkkElek 163 (439)
+...+.++.|..++.+|..++..
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 188
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.90 E-value=98 Score=25.48 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.-|.+-|++++ +|..+|..+.+|+..+++.|++|..
T Consensus 39 ~AL~eaL~EN~----~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 39 KALYEALKENE----KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 3344455566666666555555544
No 189
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.27 E-value=82 Score=25.93 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 156 aLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
....|+..|.+++..|+.|+..|+.++..++
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555555554444
No 190
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.26 E-value=70 Score=25.49 Aligned_cols=26 Identities=12% Similarity=0.044 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 162 VKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 162 ekLqerNeELEkEnkELr~ELa~aea 187 (439)
..+++.+..|+.++..|+.+...+..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 191
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=38.98 E-value=96 Score=29.38 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
..+-|.+-|++++ .|..+|..+.+|+..+++.|.+|..
T Consensus 106 RR~AL~eaLeEN~----~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 106 RRKALYEALKENE----KLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 4445566677777777777776665
No 192
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.80 E-value=35 Score=32.25 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred CccccCcchHHHHHH-HHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 122 GKIEDGLMDKKKKEF-EEKLMLSEN--LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 122 ~~~~~~~d~~~k~eL-qEkLe~sEn--lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
|-.+-+.+.+|-++| ..+|+.+|+ ..++|+-++-+..++...++...++|..|+.+|+..|..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 4 GPLKPEEHEDILNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp CCCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCchhHHHHHHHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 344456667787777 445555543 235555555555555555555555555555555555555543
No 193
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=38.59 E-value=1.8e+02 Score=24.49 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhccccCHHHHHHHHHHHHH---HhhhhhHHHH-HHhhcCCCcccH--HHH------
Q 013627 331 HLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDK---ELSSLADERA-VLKHFKWPEKKA--DAM------ 398 (439)
Q Consensus 331 ~llaIk~DVe~~~~~I~~L~~~i~~~~~~d~~evv~Fv~wld~---eLs~L~DEr~-VLk~F~wPekK~--dal------ 398 (439)
....+..|++.+..+..-|..+-....-.|++.|..-+..-.. .|..+..+|. +++.+|.|.... ..|
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~~~~ 87 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARERAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhcccc
Confidence 4556888999999999999999999999999988888876555 4556767765 677777764322 222
Q ss_pred -HHHHHHhhhHhhHHHHhcc
Q 013627 399 -REAAVEYRDLKQLENEISS 417 (439)
Q Consensus 399 -ReAa~~Y~~L~~l~~e~~~ 417 (439)
.+....|..|..+..+++.
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~ 107 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQ 107 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 1113455566666555543
No 194
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=38.53 E-value=81 Score=29.23 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
.+++..+=..+..|+.++..+++.|+.|.+|-.+..+++
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555666655544444444
No 195
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=38.27 E-value=1.5e+02 Score=26.92 Aligned_cols=57 Identities=11% Similarity=0.181 Sum_probs=37.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhc
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE-------KQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELE-------kEnkELr~ELa~aeaQI~sL~ 193 (439)
.|+-+..+.+.++.+.+...++.++...+.+...|- ..+..|..++..++.++....
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777777777777776666665555552 367777777777777664433
No 196
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.07 E-value=74 Score=25.45 Aligned_cols=9 Identities=11% Similarity=-0.034 Sum_probs=3.2
Q ss_pred HHHHhHHHH
Q 013627 139 KLMLSENLV 147 (439)
Q Consensus 139 kLe~sEnlI 147 (439)
++...+..+
T Consensus 23 q~~~l~~~~ 31 (107)
T 1fxk_A 23 QKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 197
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.82 E-value=73 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkE 174 (439)
+.+.++..|..++..++...+.||+|
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554
No 198
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.59 E-value=89 Score=26.18 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELE 172 (439)
+.-++-|+.+++..+..++.|+.++..++..+..+++...++.
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777777777766666665555544
No 199
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=37.46 E-value=49 Score=23.38 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 013627 168 NAELEKQNKKL 178 (439)
Q Consensus 168 NeELEkEnkEL 178 (439)
+.+||.|+.+|
T Consensus 17 ~~~Le~EV~RL 27 (36)
T 1kd8_A 17 VWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 200
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=37.09 E-value=72 Score=22.55 Aligned_cols=26 Identities=31% Similarity=0.320 Sum_probs=11.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAE 160 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkE 160 (439)
.|++|.++..+...+|++++..|++.
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 201
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=37.02 E-value=36 Score=22.45 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 013627 171 LEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 171 LEkEnkELr~ELa~aeaQI~sL~ 193 (439)
||=||.-|+++++.++.+|.+|+
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 45566666667777777776654
No 202
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.81 E-value=1.2e+02 Score=22.23 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 144 ENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 144 EnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
|.-+..|++-|+.|+..+..+......-+. .|++.+..++.+
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~---KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQM---KMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 445566666666666666665444333333 455555555543
No 203
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.68 E-value=1.3e+02 Score=27.19 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=15.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELE 172 (439)
.||..+=+-.-.|..+|..++.++...+.++..||
T Consensus 6 tKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE 40 (154)
T 2ocy_A 6 TQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYN 40 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555544444444433
No 204
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.44 E-value=48 Score=33.85 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+|+.++..|..+++-+..+++.++.|.+.++.++..++.++..++
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444444444444444444444555555555555554443
No 205
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=36.26 E-value=16 Score=32.29 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK----QNKKLVEDLVAAEAKI 189 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk----EnkELr~ELa~aeaQI 189 (439)
++-+.+|++++..++.|+.++-.+.+.+..+....+++.. +|..|+=++...++.|
T Consensus 12 qEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaal 71 (130)
T 3cl3_D 12 QESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAAL 71 (130)
T ss_dssp ---------------------------------------CTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777666666666655555433 5555555555555555
No 206
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.17 E-value=1.5e+02 Score=28.31 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 146 LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 146 lIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
++.-+...+..+++++..+.+...+.+.|+.-++.+++.-+.++++++
T Consensus 165 Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 165 VKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555554
No 207
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=35.91 E-value=1.5e+02 Score=23.85 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.|.-+..|++-|+.|+..+..+......-+ ..|++.|..++.++....
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ---~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQ---QKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccC
Confidence 456667777777777777777555444444 357777777777765443
No 208
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.88 E-value=1.7e+02 Score=23.39 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 128 LMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 128 ~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
.++-..++..+.|+.....+..|+.--..+..|+...-..++.+....-.....|..+...+.
T Consensus 19 ~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~ 81 (87)
T 1sfc_D 19 TNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81 (87)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999998777777777777777777776665554
No 209
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.77 E-value=1.8e+02 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 169 AELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 169 eELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
+..+.++.+|+.++.+.+..|..|.
T Consensus 54 ~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333445555555555544444443
No 210
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=35.74 E-value=1.4e+02 Score=22.36 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 155 FALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 155 eaLkkElekLqerNeELEkEnkELr 179 (439)
..|-..+..++..+.++|.||..|+
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3333444444444444444444443
No 211
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.71 E-value=84 Score=25.35 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHHHHHHHH-----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 133 KKEFEEKLMLSENLVKDLQ-----SEVFAL---KAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 133 k~eLqEkLe~sEnlIkeLq-----SELeaL---kkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
..+|.+.++....++..+. +++.-| .+-+..|+..+..++.++..|+.+-..+..+|..|+
T Consensus 18 R~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555444444431 222222 244555555555555555555555555555555544
No 212
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.67 E-value=1.4e+02 Score=22.36 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+.++..+.|+.....+..|+.--..+..|+...-..++.++...-.....|......+
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888888888888888888888877777777776666666666555544
No 213
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.45 E-value=1e+02 Score=21.90 Aligned_cols=6 Identities=50% Similarity=0.374 Sum_probs=2.1
Q ss_pred HHHHHH
Q 013627 156 ALKAEF 161 (439)
Q Consensus 156 aLkkEl 161 (439)
.|++|+
T Consensus 25 ~Lk~eN 30 (37)
T 1t6f_A 25 RLKKEN 30 (37)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 333333
No 214
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=35.24 E-value=60 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFAL 157 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaL 157 (439)
...++|++-|+..+..+++|..-+...
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~ 62 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVM 62 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777663
No 215
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=35.02 E-value=1.3e+02 Score=25.85 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=29.2
Q ss_pred hHHHHHH---HHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 013627 130 DKKKKEF---EEKLMLSENLVKDLQSEVFALKA---EFVKAQSLNAE 170 (439)
Q Consensus 130 ~~~k~eL---qEkLe~sEnlIkeLqSELeaLkk---ElekLqerNeE 170 (439)
+..+..| ++.|...+..|.+|+.++..+.+ .+.-|+.+++-
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~I 73 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI 73 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 88999999999999999998887 44445555443
No 216
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=34.97 E-value=2.1e+02 Score=24.45 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~EL 182 (439)
-|+.++..+.+++..++...+.|+..+...++.+
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333333333
No 217
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.95 E-value=1.1e+02 Score=31.11 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
-..|..|+..++++..+|++++++++.++..++.|+.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666653
No 218
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=34.95 E-value=76 Score=25.15 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=10.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 142 LSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 142 ~sEnlIkeLqSELeaLkkElekLq 165 (439)
.+-..|+.|+.++..|..++..++
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 219
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.93 E-value=2.3e+02 Score=28.23 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNA 169 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNe 169 (439)
-.+.-|+-+|...+..+.+++..+...+.++..++....
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~ 340 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELR 340 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777766666666554443
No 220
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=34.81 E-value=2e+02 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKA 159 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkk 159 (439)
-.++.|+.+|...+..|..-...-+++.+
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~K 43 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKK 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999888888776666555543
No 221
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.53 E-value=1.5e+02 Score=30.55 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
+|+.++..|+..+...-..+..|+.-+..+..++++++-.|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665544456666666666666666666655
No 222
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=34.38 E-value=66 Score=25.90 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 013627 178 LVEDLVAAEAKI 189 (439)
Q Consensus 178 Lr~ELa~aeaQI 189 (439)
++..+..++.++
T Consensus 33 ~q~~i~~lE~el 44 (86)
T 1x8y_A 33 SRRLLAEKEREM 44 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 223
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=34.10 E-value=1.9e+02 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFAL 157 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaL 157 (439)
...+++..|++++.++.+++-++..+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566777888888888777777666
No 224
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.92 E-value=1.6e+02 Score=24.58 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE 180 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ 180 (439)
..+.|-++..++-++.|+..+..+.+.+..++++...++.++.++.+
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555666666666666666666555555555555444443
No 225
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=33.92 E-value=1.1e+02 Score=29.45 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 167 LNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 167 rNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+...||.|+...+.+..-+++|+..++.
T Consensus 132 kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 132 KIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 3445555555555556666666655553
No 226
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.67 E-value=1.1e+02 Score=21.58 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=8.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFAL 157 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaL 157 (439)
|++|.++.-+...+|++++..|
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333333333333333
No 227
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=33.56 E-value=2.1e+02 Score=25.09 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 151 QSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 151 qSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
+++|+.-+.++..+ .+|...+.+|+.+++.++-++..+..
T Consensus 50 qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 50 QSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44555444554444 45666777788888888887776654
No 228
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=33.33 E-value=1.9e+02 Score=23.25 Aligned_cols=67 Identities=9% Similarity=0.151 Sum_probs=48.6
Q ss_pred ccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 123 KIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 123 ~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.|..-.++-..+++.+.|+.....+..|+.--..+..|++..-..++.+....-.+...|..+...+
T Consensus 15 ~i~~~~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 15 YVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp SSCCSSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHhccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444567888999999999999999998888989988877777766666555555555544433
No 229
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=33.30 E-value=22 Score=35.35 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.+|..+.+++..|+...+.++.++.+|++++..++..+
T Consensus 11 ~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 11 ASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444555555555555554433
No 230
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.30 E-value=1.9e+02 Score=23.27 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAE 160 (439)
Q Consensus 149 eLqSELeaLkkE 160 (439)
+|+.+|..+..+
T Consensus 4 eLr~qi~~l~~e 15 (86)
T 3swk_A 4 ELRRQVDQLTND 15 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 344444443333
No 231
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=33.23 E-value=56 Score=21.96 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 166 SLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 166 erNeELEkEnkELr~ELa~aeaQI 189 (439)
.....||.||+.|+.++..+-+++
T Consensus 6 allasleaenkqlkakveellakv 29 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667778888877777666554
No 232
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=33.16 E-value=1.2e+02 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFAL 157 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaL 157 (439)
...+++..|++++.++.++.-++..+
T Consensus 50 ~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 50 LVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556677777777777666666554
No 233
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.89 E-value=1.7e+02 Score=24.12 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFV------KAQSLNAELEK--QNKKLVEDLVAAEAKI 189 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkEle------kLqerNeELEk--EnkELr~ELa~aeaQI 189 (439)
..|+.++...+..+.+|+.++..+..++. ..+.....|+. |++..-+.|-..-+..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544322 23344444444 4555544444443333
No 234
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.80 E-value=1.5e+02 Score=31.08 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhch
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEk---EnkELr~ELa~aeaQI~sL~s 194 (439)
...++.+++.|+.+...+..+...+.+ +...|..++..++.+|..|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333322 234455555555555555543
No 235
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=32.76 E-value=94 Score=24.94 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEK-------QNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEk-------EnkELr~ELa~aeaQI~sL 192 (439)
.++|..+|...++|+..|......|.. =|+.|+.+...++..+..|
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l 57 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDL 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 356777777777777776666666654 2455555555555444433
No 236
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.66 E-value=2.1e+02 Score=29.87 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 013627 176 KKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 176 kELr~ELa~aeaQI~sL~ 193 (439)
..|..++..+..+|..+.
T Consensus 119 ~~l~~~~~~l~~~i~~l~ 136 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLY 136 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555554444
No 237
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=31.91 E-value=1.3e+02 Score=24.79 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~E 181 (439)
.|+..|.+....++.|+..|+.+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~e 60 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKE 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333333
No 238
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.67 E-value=40 Score=26.44 Aligned_cols=26 Identities=4% Similarity=0.094 Sum_probs=11.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLq 165 (439)
|..+-+.|+.|+.++..|..++..|+
T Consensus 52 L~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 52 LDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455444444444444433
No 239
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=31.24 E-value=65 Score=22.77 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 145 NLVKDLQSEVFALKAEFVKAQSLNAELEKQNK 176 (439)
Q Consensus 145 nlIkeLqSELeaLkkElekLqerNeELEkEnk 176 (439)
..++.|...+...-..+..|.++|..||.++.
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888888888888764
No 240
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=31.19 E-value=89 Score=26.07 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh
Q 013627 130 DKKKKEFEEKLMLSEN---LV-KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVE----DLVAAEAKIAS 191 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEn---lI-keLqSELeaLkkElekLqerNeELEkEnkELr~----ELa~aeaQI~s 191 (439)
+-||.|+.--..++.. .. ++++.++.+-..|+...++..-+||.....+++ ++.+++.++.+
T Consensus 17 D~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 17 DAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667766554444433 33 488999999899999999999999987666655 44556665544
No 241
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.99 E-value=2.3e+02 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013627 174 QNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 174 EnkELr~ELa~aeaQI~ 190 (439)
++.-|+.++..++.+++
T Consensus 83 ~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 83 AVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444544444443
No 242
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.96 E-value=1e+02 Score=21.38 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNK 176 (439)
Q Consensus 164 LqerNeELEkEnk 176 (439)
+...|.+||.|+.
T Consensus 12 Ll~~~~~Le~EV~ 24 (33)
T 3c3g_A 12 IXSKXYHXENXLA 24 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHH
Confidence 3333444444333
No 243
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.81 E-value=68 Score=32.73 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=22.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
.+|..+|...+++++.|+.+-+.+ +.+...+++|..+++.++..++
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l-------~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYI-------KDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHc
Confidence 345555554445554444444433 3344455556666666665554
No 244
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=30.51 E-value=1.2e+02 Score=24.78 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAEL 171 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeEL 171 (439)
....+-|.+-|++++.+.+ +|..+++|+..+++.|..|
T Consensus 23 E~RR~AL~eaL~EN~~Lh~----~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 23 EQRRKALYEALKENEKLHK----EIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3455666777777666554 4444555555555555444
No 245
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=30.38 E-value=2.6e+02 Score=23.88 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 154 LeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
|.+...-+.+...+.+.+++++.+=.++..+++.|+.+|-+
T Consensus 50 iaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLls 90 (114)
T 2xzr_A 50 IAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILS 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666677777888888888888888877765
No 246
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.05 E-value=91 Score=21.67 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=8.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFA 156 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELea 156 (439)
|++|+++.-....+|++++..
T Consensus 5 LEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 333333333333333333333
No 247
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.99 E-value=1.7e+02 Score=21.89 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
.+|..|+.-+..+-.+..+||....++++++.+++.
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 455556655666666666666666666666665554
No 248
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=29.80 E-value=72 Score=21.70 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 155 FALKAEFVKAQSLNAELEKQNKKLVED 181 (439)
Q Consensus 155 eaLkkElekLqerNeELEkEnkELr~E 181 (439)
.+|.+|+.+....|-+||.|...|+.+
T Consensus 4 aqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 344455555555555556555555543
No 249
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=29.68 E-value=82 Score=29.69 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE 170 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeE 170 (439)
.....|.++|+..+..+.+|+.++..+..++.+++.+...
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999999999998877654
No 250
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.40 E-value=34 Score=33.57 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~a 185 (439)
.+++.+.+.+..|+.|+.+|+++..++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~ 211 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTA 211 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555554444333
No 251
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.33 E-value=74 Score=25.16 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr~ELa~ae 186 (439)
..+..|+..+.+-+.++.+|+.++.++.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444443
No 252
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.28 E-value=56 Score=32.01 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 165 QSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 165 qerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
.+..+.|+.++.+|+.+++.++.++.++.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~ 212 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTAN 212 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666667777777777766654444
No 253
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.26 E-value=1.7e+02 Score=29.96 Aligned_cols=48 Identities=17% Similarity=0.094 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhch
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEK---QNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEk---EnkELr~ELa~aeaQI~sL~s 194 (439)
...++.+++.|+.+...+..+...+.+ +...|..+...+..+|..+..
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 90 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELEN 90 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333322 233455555555555554443
No 254
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=29.17 E-value=1.5e+02 Score=21.91 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=24.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
-.+-+.+|+.++.|+.+|+.|..++..-+..+..+..
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455677888888888888887777665555544444
No 255
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=29.17 E-value=1.3e+02 Score=24.41 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 168 NAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 168 NeELEkEnkELr~ELa~aeaQ 188 (439)
|..|+.++..++.++..++.+
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeE 56 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKE 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 256
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.00 E-value=2.7e+02 Score=23.73 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=7.6
Q ss_pred hhhHHHHHHHH
Q 013627 207 PKFKDVQKLIA 217 (439)
Q Consensus 207 ~~~KkIQklia 217 (439)
.+.++||+++-
T Consensus 87 ~~~~kIq~ILY 97 (106)
T 4e61_A 87 RFVKKVESILY 97 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 46788888543
No 257
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.17 E-value=1.2e+02 Score=21.14 Aligned_cols=11 Identities=18% Similarity=0.027 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 013627 165 QSLNAELEKQN 175 (439)
Q Consensus 165 qerNeELEkEn 175 (439)
...+.+||.|+
T Consensus 14 l~~~~~Le~EV 24 (34)
T 3c3f_A 14 LSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhhhHHHHHH
Confidence 33333344333
No 258
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=28.14 E-value=63 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=20.0
Q ss_pred CccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013627 122 GKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (439)
Q Consensus 122 ~~~~~~~d~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekL 164 (439)
+.|.++.++ +++.++++.....++.|+.++..|..|+..+
T Consensus 76 ~~~n~~~~~---~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 76 VSVNLELTA---EEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp ECCCBCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceecCcCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445544 2344444444455555555666555555544
No 259
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.96 E-value=97 Score=21.66 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 159 AEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 159 kElekLqerNeELEkEnkELr 179 (439)
..++.+...|.+||.|+..|+
T Consensus 8 dKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444443
No 260
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.83 E-value=36 Score=30.27 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKA----------------------QSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekL----------------------qerNeELEkEnkELr~ELa~aea 187 (439)
+..+..|++.|.........-+++...+..|++.| ..+|..|+.+.++-+.-|..+..
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhc
Q 013627 188 KIASLS 193 (439)
Q Consensus 188 QI~sL~ 193 (439)
|+..|+
T Consensus 125 QL~~LK 130 (135)
T 2e7s_A 125 QLKNLK 130 (135)
T ss_dssp ------
T ss_pred HHHHHH
No 261
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=27.57 E-value=2.8e+02 Score=25.78 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=28.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
++-.-..+..++.++..|.+++..++...++|..++.++-..-...+.++
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333335566666666666666666666666555555555555555544
No 262
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.55 E-value=76 Score=32.23 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSE 153 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSE 153 (439)
++.+++..+...+.+..+
T Consensus 42 ~~~~~~~l~~~~n~~sk~ 59 (425)
T 2dq3_A 42 IIKRLEALRSERNKLSKE 59 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 263
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=27.40 E-value=3.1e+02 Score=23.85 Aligned_cols=15 Identities=47% Similarity=0.742 Sum_probs=10.7
Q ss_pred hhHHHHHHHHhhhhc
Q 013627 208 KFKDVQKLIANKLEH 222 (439)
Q Consensus 208 ~~KkIQklia~~le~ 222 (439)
.|+.||.+-+|-|||
T Consensus 100 nFe~Iq~~~~~~~~~ 114 (119)
T 2avr_X 100 DFEKIQALRAGNLEH 114 (119)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHcccccc
Confidence 578888888888876
No 264
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=27.02 E-value=2e+02 Score=21.51 Aligned_cols=59 Identities=10% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
..-++..+.|+.....+..|+.--..+..|+...-..++.++...-.....|..+...+
T Consensus 3 ~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888888888877777777766666666665555444
No 265
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.00 E-value=2.9e+02 Score=23.37 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 013627 174 QNKKLVEDLVAAEAKI 189 (439)
Q Consensus 174 EnkELr~ELa~aeaQI 189 (439)
++++|+++|..++.++
T Consensus 68 ~v~elqgEI~~Lnq~L 83 (99)
T 3ni0_A 68 RIKELENEVTKLNQEL 83 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555544
No 266
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.78 E-value=31 Score=34.29 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 160 EFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 160 ElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
|+.++..+...++.++..|+..|..++.+|..|.
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~ 38 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLK 38 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 267
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=26.78 E-value=2.4e+02 Score=22.45 Aligned_cols=31 Identities=6% Similarity=0.135 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 135 eLqEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
+|+..++...++..+|..++..+..++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655544
No 268
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.68 E-value=1e+02 Score=31.57 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 013627 131 KKKKEFEEKLMLSENLVK 148 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlIk 148 (439)
++.++|+..-.++..+++
T Consensus 45 ~~l~elsn~ts~v~~Lvk 62 (409)
T 1m1j_C 45 GLLQQATNSTGSIEYLIQ 62 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 269
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.65 E-value=42 Score=34.40 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa 183 (439)
++..++.|+..+...+..++++++++++++.
T Consensus 40 e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 40 EIRIFRSELQRLSHENNVMLEKIKDNKEKIK 70 (434)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333334444444444444443
No 270
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.55 E-value=3.2e+02 Score=28.88 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
+|+.++.-|+..+...-+.+.-|+.-+..+..++++||..|.
T Consensus 115 eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666556666677767777777777776663
No 271
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=26.04 E-value=1.9e+02 Score=23.73 Aligned_cols=48 Identities=23% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.=|.-+=..|..|+.+...+.++. .++..||..|..|--.++.++-|.
T Consensus 32 ~IL~ksvdYI~~Lq~e~~r~~e~e----~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 32 TILKASVDYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHH
Confidence 345556677888888777775543 345566666666666666666554
No 272
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.89 E-value=1.7e+02 Score=27.79 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 155 FALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 155 eaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
....+|+..|.+++..|+.|+..|+.+...++.
T Consensus 111 ~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 111 YEALKENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555555555555544444443
No 273
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.87 E-value=3.1e+02 Score=23.45 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhhch
Q 013627 179 VEDLVAAEAKIASLSS 194 (439)
Q Consensus 179 r~ELa~aeaQI~sL~s 194 (439)
+..+..++.+|.+|+.
T Consensus 81 ~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 81 RAAVSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666655553
No 274
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.83 E-value=2.5e+02 Score=22.28 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVF 155 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELe 155 (439)
....|..+|+..+..|..|+.+|.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777776665
No 275
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.69 E-value=3.6e+02 Score=25.25 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=4.7
Q ss_pred HHHHHHhhhhc
Q 013627 212 VQKLIANKLEH 222 (439)
Q Consensus 212 IQklia~~le~ 222 (439)
|.+.+.+.|++
T Consensus 145 i~k~l~~~L~k 155 (213)
T 4ani_A 145 VYRSLVDALKK 155 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 276
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=25.66 E-value=2.3e+02 Score=22.23 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~ 190 (439)
++++-.+.|+.....+..|+.--..+..|++..-..+++|+...-.....|..+...+.
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~ 71 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLA 71 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566777777777888777778888887777777777766666666666655543
No 277
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.64 E-value=1.7e+02 Score=21.30 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013627 167 LNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 167 rNeELEkEnkELr~ELa~ae 186 (439)
+..+||..|.+|+..+..+.
T Consensus 11 r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444443333
No 278
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=25.55 E-value=2.4e+02 Score=26.39 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=13.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVK 163 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElek 163 (439)
++..+...+..+..++.++...+.++..
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a~~~~~~ 94 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQAEAELKL 94 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544444433
No 279
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=25.34 E-value=2.8e+02 Score=23.41 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 166 SLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 166 erNeELEkEnkELr~ELa~ae 186 (439)
.+..+|+-|++.|.++|..+.
T Consensus 67 ~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 67 ARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554
No 280
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=25.24 E-value=3.6e+02 Score=24.42 Aligned_cols=29 Identities=3% Similarity=-0.013 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekL 164 (439)
++..|...+..+...+.++...+.+++..
T Consensus 58 ~~~~l~~a~a~l~~a~a~l~~a~~~~~r~ 86 (277)
T 2f1m_A 58 YQATYDSAKGDLAKAQAAANIAQLTVNRY 86 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666555555443
No 281
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=25.22 E-value=1.2e+02 Score=21.12 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=7.4
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVF 155 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELe 155 (439)
|++|.++.-....+|++++.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHH
Confidence 33333333333333333333
No 282
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=25.18 E-value=86 Score=20.49 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013627 171 LEKQNKKLVEDLVAAEAKIA 190 (439)
Q Consensus 171 LEkEnkELr~ELa~aeaQI~ 190 (439)
|..|..+|++++.+++-++.
T Consensus 5 lkdevgelkgevralkdevk 24 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHh
Confidence 44455566666666555543
No 283
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.94 E-value=97 Score=22.49 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSEVFALKAEF 161 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSELeaLkkEl 161 (439)
+..++++.-+..|+-|..|+.+|+.|...+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443
No 284
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=24.86 E-value=2.3e+02 Score=25.44 Aligned_cols=129 Identities=10% Similarity=0.143 Sum_probs=75.3
Q ss_pred hhhHHhHHhhhhcccCCCCCCCCCCCCchhhhhhhHHHHHhcchhhHHHHHHHH------------Hhhhh---hhHHHH
Q 013627 286 SFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADI------------ETKGG---FINSLI 350 (439)
Q Consensus 286 ~vveLY~sLk~K~~~~~~~~~~~~~~~~~~~a~~~mIgEIenRSa~llaIk~DV------------e~~~~---~I~~L~ 350 (439)
.+-.-|+.|-.+.- .|-.++ ....-......=.+|.-=..|..|.+.+...+ ..-.. -++++.
T Consensus 34 eIk~aYr~la~~~H-PDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~r 111 (181)
T 3uo3_A 34 RLRKEYRQLQAQHH-PDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIH 111 (181)
T ss_dssp HHHHHHHHHHHTCC-TTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHHHHHHH
Confidence 56777888887652 222111 11101111223456666678999988772111 11123 345667
Q ss_pred HHHHhccccCHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCcccHHHHHHHHHHhhhHhhHHHHhccccCCC
Q 013627 351 QKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDT 422 (439)
Q Consensus 351 ~~i~~~~~~d~~evv~Fv~wld~eLs~L~DEr~VLk~F~wPekK~dalReAa~~Y~~L~~l~~e~~~~~d~p 422 (439)
-+|..+ .+-+++..|...+++.+..+..+ +-..|+ .+.+++.+....-.+=+.+|..+++.|+..-
T Consensus 112 E~leea--~~~~~l~~l~~~~~~~~~~~~~~--l~~~~~--~~d~~~A~~~~~kL~y~~kl~~~ik~we~g~ 177 (181)
T 3uo3_A 112 DELSQM--DDEAGVKLLEKQNKERIQDIEAQ--LGQCYN--DKDYAAAVKLTVELKYWYNLAKAFKDWAPGK 177 (181)
T ss_dssp HHHHHC--CSHHHHHHHHHHHHHHHHHHHHH--HHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred HHHHhc--cCHHHHHHHHHHHHHHHHHHHHH--HHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 777765 46778888888888777777544 223331 2344555555566666689999999998653
No 285
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.69 E-value=1.7e+02 Score=21.25 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr 179 (439)
+|-++++....|+....++..+|+...++|+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444443
No 286
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.66 E-value=3e+02 Score=23.82 Aligned_cols=65 Identities=25% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQ------------NKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKD 211 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkE------------nkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~Kk 211 (439)
+++|+.+|......+...++.+.+-++. +..=+..+..++.+|..|+.+.-+-....+++..-+|
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~~k~~D 100 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNLGKEQD 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCC
No 287
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.39 E-value=2.4e+02 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013627 161 FVKAQSLNAELEKQNKKLVEDL 182 (439)
Q Consensus 161 lekLqerNeELEkEnkELr~EL 182 (439)
+...+..+.+|.+.+..|+.+|
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 288
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.26 E-value=1.1e+02 Score=22.83 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013627 169 AELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 169 eELEkEnkELr~ELa~aeaQI 189 (439)
..||..|..|+..++.++..|
T Consensus 27 arlendnanlekdianlekdi 47 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDI 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHH
Confidence 333333333333333333333
No 289
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.23 E-value=2.3e+02 Score=25.53 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 148 KDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 148 keLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+.|...|...+..+..+......|+.++..|..+++.++.+
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEe 109 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444455444444444444444444444444444444433
No 290
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=24.14 E-value=2.2e+02 Score=25.10 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
+++|-..|..+.+|-..+......-..|+.+|+.+|..+.
T Consensus 67 ~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 67 ARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 3333334444433333333333333334444444444443
No 291
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.12 E-value=2.3e+02 Score=21.20 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 163 KAQSLNAELEKQNKKLVEDLVAAEAKI 189 (439)
Q Consensus 163 kLqerNeELEkEnkELr~ELa~aeaQI 189 (439)
.+...|.-||+.+..|+..++.++..+
T Consensus 28 rlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 28 RLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 344455566666666666666666554
No 292
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.11 E-value=1.7e+02 Score=29.58 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhc
Q 013627 177 KLVEDLVAAEAKIASLS 193 (439)
Q Consensus 177 ELr~ELa~aeaQI~sL~ 193 (439)
.|..++..+..++..+.
T Consensus 68 ~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 68 ALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 293
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.04 E-value=41 Score=32.03 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 164 AQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 164 LqerNeELEkEnkELr~ELa~aeaQ 188 (439)
+.++.+.|+.|+++++++|..++.+
T Consensus 153 ~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 153 SADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433
No 294
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.95 E-value=2.6e+02 Score=25.72 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQ 174 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkE 174 (439)
+.|=+...++.++.|+.+++.|..++...++.+..+.++
T Consensus 126 ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 126 IRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888888888888887777766666664
No 295
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.84 E-value=3.4e+02 Score=23.77 Aligned_cols=11 Identities=18% Similarity=0.147 Sum_probs=5.1
Q ss_pred HhHHhhhhccc
Q 013627 290 LYHSLTKQVEK 300 (439)
Q Consensus 290 LY~sLk~K~~~ 300 (439)
|-+.|.++..|
T Consensus 124 lg~ALlGk~vG 134 (158)
T 2p4v_A 124 MARALLKKEVG 134 (158)
T ss_dssp HHHHSTTCCTT
T ss_pred HHHHhcCCCCC
Confidence 33455555443
No 296
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.74 E-value=3.2e+02 Score=27.46 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhHHHH
Q 013627 131 KKKKEFEEKLMLSENLV 147 (439)
Q Consensus 131 ~~k~eLqEkLe~sEnlI 147 (439)
...+-++|++...++..
T Consensus 168 ~~~~~f~~q~~~~e~~~ 184 (373)
T 3hhm_B 168 ETIKIFEEQCQTQERYS 184 (373)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555666666666543
No 297
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.72 E-value=1.4e+02 Score=20.92 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=8.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFA 156 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELea 156 (439)
|++|+++.-+....|++++..
T Consensus 6 ledKvEel~~~~~~l~nEv~R 26 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 344444333333344433333
No 298
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=23.42 E-value=2.8e+02 Score=22.08 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 013627 137 EEKLMLSENLVKDLQSEVFALKAEFVKAQ 165 (439)
Q Consensus 137 qEkLe~sEnlIkeLqSELeaLkkElekLq 165 (439)
+..++...++..+|..++..+..++..+.
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666665555555543
No 299
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.41 E-value=1.2e+02 Score=21.01 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 163 KAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 163 kLqerNeELEkEnkELr~ELa~aea 187 (439)
++.++-++|-.+|.+|+.++.+++.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444555555556666666655554
No 300
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=23.35 E-value=2.3e+02 Score=21.09 Aligned_cols=51 Identities=20% Similarity=0.103 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
|+.++...++++.-+..+++.+.-+++.+..++...+.-+.-|+.++..++
T Consensus 10 le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 10 LEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 466666667766666666666666666655444443333333444443333
No 301
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.07 E-value=1.2e+02 Score=21.17 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013627 161 FVKAQSLNAELEKQNKKL 178 (439)
Q Consensus 161 lekLqerNeELEkEnkEL 178 (439)
+++|...|.+|+.|+..|
T Consensus 10 VEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 10 VEELASANYHLANAVARL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333334444444443333
No 302
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=22.98 E-value=84 Score=31.18 Aligned_cols=7 Identities=0% Similarity=0.098 Sum_probs=3.1
Q ss_pred hHHhHHh
Q 013627 288 AQLYHSL 294 (439)
Q Consensus 288 veLY~sL 294 (439)
++||+.-
T Consensus 125 v~F~R~W 131 (323)
T 1lwu_B 125 SNFARDW 131 (323)
T ss_dssp SCCCCCH
T ss_pred cccccCH
Confidence 4444443
No 303
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=22.94 E-value=65 Score=27.41 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=16.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 138 EkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
.-|+.+=..|+.|+.++..|..+ ..++..|+.+|..|...++.++-|
T Consensus 67 ~IL~~aieYIk~Lq~~~~~l~~~----~~~~~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 67 TILKASVDYIRKLQREQQRAKDL----ENRQKKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----CC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667778888777777543 233445555555555555555544
No 304
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=22.86 E-value=3.8e+02 Score=23.29 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChhhHHHHHHHHhhhhc
Q 013627 154 VFALKAEFVKAQSLNAELEK-----QNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEH 222 (439)
Q Consensus 154 LeaLkkElekLqerNeELEk-----EnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~~KkIQklia~~le~ 222 (439)
+..+-.++..++......+. ...+...++..+..+|...+.-..=..+-..=+.++.+|.+.|+.-++.
T Consensus 42 aq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~~I~~iI~~~I~~ 115 (151)
T 2pih_A 42 VSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTN 115 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555555555443 1455556666666666433322211112222334777888887775553
No 305
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.68 E-value=1.7e+02 Score=22.50 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 153 EVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE 186 (439)
Q Consensus 153 ELeaLkkElekLqerNeELEkEnkELr~ELa~ae 186 (439)
++..|+.-+..|-...+.||.++.+.++++.++.
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444
No 306
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.43 E-value=1e+02 Score=20.27 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 013627 173 KQNKKLVEDLVAAEAKIASL 192 (439)
Q Consensus 173 kEnkELr~ELa~aeaQI~sL 192 (439)
..|..|+++++.++-+|..|
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 34455555555555555443
No 307
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.41 E-value=2e+02 Score=21.60 Aligned_cols=16 Identities=0% Similarity=0.187 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQ 151 (439)
Q Consensus 136 LqEkLe~sEnlIkeLq 151 (439)
|.|++...++.|++-+
T Consensus 7 L~EQ~~~I~~~I~qAk 22 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAK 22 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888887665
No 308
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=22.31 E-value=1.5e+02 Score=24.82 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 152 SEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 152 SELeaLkkElekLqerNeELEkEnkELr~ELa~aea 187 (439)
.++..|+.|+..|...-..|...+..++++|..+..
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666677777666666677666666666665553
No 309
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=22.22 E-value=3.1e+02 Score=22.06 Aligned_cols=55 Identities=4% Similarity=0.064 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVA 184 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~ 184 (439)
.+...+++.+++++.....+.=.++..=.+.++.+.++-+.|..+-...+.+-..
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~ 58 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 58 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888877776666666555566666666666665544444333333
No 310
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.03 E-value=3.5e+02 Score=24.91 Aligned_cols=49 Identities=8% Similarity=-0.041 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 140 LMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188 (439)
Q Consensus 140 Le~sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQ 188 (439)
-++...+|..-...+..|++++..|++.+.....+++.+..+|.+.-..
T Consensus 123 aE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 123 AEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777777777777666666777777776554433
No 311
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.57 E-value=1.3e+02 Score=21.10 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 013627 165 QSLNAELEKQN 175 (439)
Q Consensus 165 qerNeELEkEn 175 (439)
...+..|+.|+
T Consensus 14 l~~~~~L~~EV 24 (34)
T 2bni_A 14 LSKGHHICNEL 24 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHccHHHHHHH
Confidence 33334444433
No 312
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=21.54 E-value=19 Score=34.93 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHhh
Q 013627 394 KADAMREAAVEYR 406 (439)
Q Consensus 394 K~dalReAa~~Y~ 406 (439)
+.|-+--...+|.
T Consensus 243 ~~DiwslG~il~e 255 (400)
T 1nxk_A 243 SCDMWSLGVIMYI 255 (400)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHH
Confidence 4455555555543
No 313
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.49 E-value=2e+02 Score=19.99 Aligned_cols=9 Identities=0% Similarity=-0.370 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 013627 167 LNAELEKQN 175 (439)
Q Consensus 167 rNeELEkEn 175 (439)
.+.+|+.|+
T Consensus 15 ~~~~le~EV 23 (33)
T 2wq1_A 15 KIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333344333
No 314
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.26 E-value=2.2e+02 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 013627 136 FEEKLMLSENLVKDLQSEVFALKAEFVKA 164 (439)
Q Consensus 136 LqEkLe~sEnlIkeLqSELeaLkkElekL 164 (439)
++..|...+..+..++.++...+.++...
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a 96 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVA 96 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544443
No 315
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.20 E-value=86 Score=21.38 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 150 LQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 150 LqSELeaLkkElekLqerNeELEk 173 (439)
|+.++-.|+.-+.++|++.+.||.
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 316
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.19 E-value=1e+02 Score=22.64 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=7.0
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQ 151 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLq 151 (439)
..|++++...+..+..|+
T Consensus 47 ~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444443333333333
No 317
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.01 E-value=76 Score=33.55 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=17.6
Q ss_pred HHHhcchhhHHHHHHHHHhhhhhhHHHHHHHHhcc
Q 013627 323 GEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAA 357 (439)
Q Consensus 323 gEIenRSa~llaIk~DVe~~~~~I~~L~~~i~~~~ 357 (439)
.+|+.|-+|.. =-+...+-+..|..+|.++.
T Consensus 501 ~~~~eR~~~~e----kn~~lq~qL~~L~~el~~~r 531 (575)
T 2i1j_A 501 DPVADRRTLAE----RNERLHNQLKALKQDLARSC 531 (575)
T ss_dssp CGGGGCCCHHH----HCHHHHHHHHHHHHHHHTTB
T ss_pred cchHHHHHHHH----hhHHHHHHHHHHHHHHHHHh
Confidence 34478888862 12223334567777777654
No 318
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=20.90 E-value=4.4e+02 Score=23.29 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhhcCCCcc
Q 013627 363 DLLEFVDWLDKELSSLADERAVLKHFKWPEK 393 (439)
Q Consensus 363 evv~Fv~wld~eLs~L~DEr~VLk~F~wPek 393 (439)
.+..|+..++.++.-|.+-..++..++|+..
T Consensus 106 ~L~~f~~~~~~~~~Wl~eke~~~~s~d~g~~ 136 (210)
T 3pdy_A 106 SLHSFVAAATKELMWLNEKEEEEVGFDWSDR 136 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 4555666666666666655666666666643
No 319
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.87 E-value=2.8e+02 Score=23.90 Aligned_cols=26 Identities=8% Similarity=0.044 Sum_probs=20.7
Q ss_pred cCcchHHHHHHHHHHHHhHHHHHHHH
Q 013627 126 DGLMDKKKKEFEEKLMLSENLVKDLQ 151 (439)
Q Consensus 126 ~~~d~~~k~eLqEkLe~sEnlIkeLq 151 (439)
.|+=-..+.++++.|...+.+...|.
T Consensus 26 ~DPF~~Vk~EVq~sl~~l~~l~~~w~ 51 (130)
T 4dnd_A 26 EDPFFVVRGEVQKAVNTARGLYQRWC 51 (130)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788899999999999998876
No 320
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.72 E-value=2.3e+02 Score=23.69 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 013627 149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS 194 (439)
Q Consensus 149 eLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~s 194 (439)
.++.=|..+-.|+-.+-+..+.||.++.+.++.+..++.=..++..
T Consensus 34 ~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 34 TLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444466666788888888888888888888888887776666654
No 321
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.68 E-value=1.9e+02 Score=24.93 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELE 172 (439)
Q Consensus 130 ~~~k~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELE 172 (439)
+.-++-|..+++..+..++.|+..+..+++.+..+.....++.
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777766666666666666666665555554444443
No 322
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.68 E-value=4.4e+02 Score=23.31 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=48.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhccCChh
Q 013627 139 KLMLSENLVKDLQSEVFALKAEFVKAQ----------SLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPK 208 (439)
Q Consensus 139 kLe~sEnlIkeLqSELeaLkkElekLq----------erNeELEkEnkELr~ELa~aeaQI~sL~s~~~~~~~~E~qs~~ 208 (439)
+|...+..+.....+++.+..++..++ +....|++.++..-+++.+.-.++.++.-..+-..+....-.+
T Consensus 22 kL~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~~~~~~R~kRK~l 101 (135)
T 1i6z_A 22 KLKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPEQFKDSRLKRKNL 101 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 455555556666666666666665544 3345677788888888888877886655433433333333445
Q ss_pred hHHHHHHHHh
Q 013627 209 FKDVQKLIAN 218 (439)
Q Consensus 209 ~KkIQklia~ 218 (439)
-++||..++.
T Consensus 102 V~~iQ~~L~~ 111 (135)
T 1i6z_A 102 VKKVQVFLAE 111 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6888886554
No 323
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.62 E-value=1.9e+02 Score=27.76 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.8
Q ss_pred CC-CcccHHHHHHHHHH
Q 013627 389 KW-PEKKADAMREAAVE 404 (439)
Q Consensus 389 ~w-PekK~dalReAa~~ 404 (439)
|| |+...+.++.+-..
T Consensus 291 gWvp~~~~~~~~~~l~~ 307 (357)
T 3rrk_A 291 GWVPQKAKGKVEEALGR 307 (357)
T ss_dssp EEECTTTHHHHHHTCCS
T ss_pred EEeeHHHHHHHHHHHHh
Confidence 99 99999999987754
No 324
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.38 E-value=1.5e+02 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 163 KAQSLNAELEKQNKKLVEDLVAAEA 187 (439)
Q Consensus 163 kLqerNeELEkEnkELr~ELa~aea 187 (439)
+|.++.++|=.+|.+|+.++.++++
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444444455555555554443
No 325
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.37 E-value=3.4e+02 Score=21.91 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 013627 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS 193 (439)
Q Consensus 143 sEnlIkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~aeaQI~sL~ 193 (439)
...+...++..+...+.|++.++...++|..=-..|+.-+..++.+...+.
T Consensus 9 eDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 9 SDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888888887744445555555554444333
No 326
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.22 E-value=2.3e+02 Score=23.98 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 147 VKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA 185 (439)
Q Consensus 147 IkeLqSELeaLkkElekLqerNeELEkEnkELr~ELa~a 185 (439)
+++|-..|..|.+|.-.+......-.-|+.+|+.++..+
T Consensus 51 ~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 51 AKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 344444444444443333333333333444444444333
No 327
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=20.16 E-value=2.8e+02 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 013627 132 KKKEFEEKLMLSENLVKDLQSE 153 (439)
Q Consensus 132 ~k~eLqEkLe~sEnlIkeLqSE 153 (439)
.-.++.|+|+++|+++++|+..
T Consensus 6 ~~ee~~e~L~~~e~l~~el~~t 27 (184)
T 4egx_A 6 FSEEAIERLKETEKIIAELNET 27 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhH
Confidence 4568889999998888877643
No 328
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=20.16 E-value=2.9e+02 Score=23.47 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhccc-cCHHHHHHHHHHHHHH---hhhhhHHHH-HHhhcCCCc
Q 013627 332 LLAIKADIETKGGFINSLIQKVLAAAY-TNIEDLLEFVDWLDKE---LSSLADERA-VLKHFKWPE 392 (439)
Q Consensus 332 llaIk~DVe~~~~~I~~L~~~i~~~~~-~d~~evv~Fv~wld~e---Ls~L~DEr~-VLk~F~wPe 392 (439)
..-+..+++.+..|..-|..+-....- .|++.|...+..-... |..+..+|. .+..+|+|.
T Consensus 10 ~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~ 75 (154)
T 3opc_A 10 KSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLAS 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345788888999999999999998888 8888888888765554 444555554 777778774
No 329
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.10 E-value=1.8e+02 Score=26.87 Aligned_cols=40 Identities=10% Similarity=0.031 Sum_probs=23.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013627 134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEK 173 (439)
Q Consensus 134 ~eLqEkLe~sEnlIkeLqSELeaLkkElekLqerNeELEk 173 (439)
.=++|=++-.-.-+.+|+.++..|+++++.|+...++...
T Consensus 141 e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 141 EVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666665555444
Done!