BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013628
         (439 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1JUP4|KGSDH_AZOBR Alpha-ketoglutaric semialdehyde dehydrogenase OS=Azospirillum
           brasilense GN=araE PE=1 SV=1
          Length = 481

 Score = 32.0 bits (71), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 12  ITRWVIDLDWRLLLLIIPPLSILVFLSLSSIPINPFSTFTPIKSFISNRTLTPTTTTSTN 71
           I  W  D   R+   I+PP ++    ++   P+ P + FTP  +F  N+ +   +     
Sbjct: 113 IIEWFADEGRRVYGRIVPPRNLGAQQTVVKEPVGPVAAFTPW-NFPVNQVVRKLSAALAT 171

Query: 72  SADFVISSPNG--ANPAAAQWKDELLRSRIAVCLVGGARRFELTGPSIIENILEVYP 126
              F++ +P    A+PAA      LLR+ +   +  G        P+ I + L  +P
Sbjct: 172 GCSFLVKAPEETPASPAA------LLRAFVDAGVPAGVIGLVYGDPAEISSYLIPHP 222


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,727,352
Number of Sequences: 539616
Number of extensions: 7336975
Number of successful extensions: 18189
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18169
Number of HSP's gapped (non-prelim): 23
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)