Query 013628
Match_columns 439
No_of_seqs 44 out of 46
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10613 Lig_chan-Glu_bd: Liga 71.3 3.1 6.7E-05 33.7 2.1 28 194-223 21-48 (65)
2 PLN03153 hypothetical protein; 41.9 2.7E+02 0.0058 31.3 11.1 97 199-297 200-309 (537)
3 PLN03181 glycosyltransferase; 26.8 3.4E+02 0.0074 29.9 8.8 45 207-251 196-250 (453)
4 PRK14563 ribosome modulation f 25.7 17 0.00036 29.1 -0.7 22 364-385 20-46 (55)
5 KOG3870 Uncharacterized conser 22.8 55 0.0012 35.4 2.1 95 150-257 265-371 (434)
6 KOG1053 Glutamate-gated NMDA-t 22.1 69 0.0015 38.1 2.8 31 194-224 468-504 (1258)
7 PF12000 Glyco_trans_4_3: Gkyc 20.1 1.5E+02 0.0032 28.2 4.1 70 180-251 34-112 (171)
8 KOG4138 Unchracterized conserv 20.0 81 0.0018 27.7 2.2 25 407-431 60-84 (96)
9 COG2515 Acd 1-aminocyclopropan 14.9 2.1E+02 0.0045 30.2 4.1 33 176-216 155-187 (323)
10 PF11072 DUF2859: Protein of u 14.2 1.3E+02 0.0028 28.1 2.2 67 230-297 46-115 (142)
No 1
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=71.33 E-value=3.1 Score=33.66 Aligned_cols=28 Identities=29% Similarity=0.600 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhCCCcccEEEEEeccceec
Q 013628 194 GCLNMIEAYQKGNNFTYKWIVRTRVDGYWN 223 (439)
Q Consensus 194 gC~dLIkqyekk~nfkYD~IIrTR~D~~w~ 223 (439)
=|.||+++.+++.||+|++++. +|+=|=
T Consensus 21 yciDll~~la~~l~F~y~i~~~--~Dg~yG 48 (65)
T PF10613_consen 21 YCIDLLEELAEELNFTYEIYLV--PDGKYG 48 (65)
T ss_dssp HHHHHHHHHHHHHT-EEEEEE---TTS--E
T ss_pred EHHHHHHHHHHHcCCeEEEEEC--CCCCCc
Confidence 4899999999999999999887 665443
No 2
>PLN03153 hypothetical protein; Provisional
Probab=41.90 E-value=2.7e+02 Score=31.29 Aligned_cols=97 Identities=19% Similarity=0.145 Sum_probs=57.6
Q ss_pred HHHHHHhCCCcccEEEEEeccceeccCCCC-----CCCCC-CceecCCCCCCCCCCC----cccccCc--hhHHHHhhhc
Q 013628 199 IEAYQKGNNFTYKWIVRTRVDGYWNLPLDP-----DNFIP-DQYLVPPGSSFGGLND----RLGIGDL--NTSIVALSRL 266 (439)
Q Consensus 199 Ikqyekk~nfkYD~IIrTR~D~~w~~PLp~-----~~f~p-~~~~VP~gs~fGGLND----RFaIG~~--~ts~aal~RL 266 (439)
+.+--+++.=.+||+|..--|+|+. ++- +.|++ ..+|+-.-+.++..|. -|+.|+. -.|+.++..|
T Consensus 200 v~et~~~~~pd~kWfVf~DDDTyf~--~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSrPLae~L 277 (537)
T PLN03153 200 VLESFRLGLPDVRWFVLGDDDTIFN--ADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPLAEAL 277 (537)
T ss_pred HHHHHHhhCCCCCEEEEecCCcccc--HHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcHHHHHHH
Confidence 4444344556799999999999985 231 34566 4455543333333344 3677755 4566666555
Q ss_pred c-ccccchhhhccCCChHHHHHHHHhcCCcee
Q 013628 267 S-LIPQLDLAGFRQLNSETAFKAQLTTHHVPR 297 (439)
Q Consensus 267 s-llp~l~a~G~R~LnSE~~lKa~L~~~GV~v 297 (439)
. .++.|...=...--+...+.+-|...||+.
T Consensus 278 ~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~L 309 (537)
T PLN03153 278 SRILDDCLDRYPKLYGSDDRLHACITELGVPL 309 (537)
T ss_pred HHHhhhhhhhcccCCCcHHHHHHHHHHcCCCc
Confidence 5 566553211122346667788888889876
No 3
>PLN03181 glycosyltransferase; Provisional
Probab=26.80 E-value=3.4e+02 Score=29.88 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=32.1
Q ss_pred CCcccEEEEEeccceeccC---CCCCCCCCCceec---C----CCCCCCCCCCcc
Q 013628 207 NFTYKWIVRTRVDGYWNLP---LDPDNFIPDQYLV---P----PGSSFGGLNDRL 251 (439)
Q Consensus 207 nfkYD~IIrTR~D~~w~~P---Lp~~~f~p~~~~V---P----~gs~fGGLNDRF 251 (439)
.=+++||...-.|.+.+.| ||...|.+-.++| | +-++|+|+|-.-
T Consensus 196 ~PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~~vy~~qdw~GlN~Gs 250 (453)
T PLN03181 196 HPEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPKLIYEKRSWTALNAGV 250 (453)
T ss_pred CCCceEEEEecCCceeecCCCCCCHhhcCCccccccCCcccccccccccccceee
Confidence 4579999999999999998 7765555422222 1 237899999763
No 4
>PRK14563 ribosome modulation factor; Provisional
Probab=25.70 E-value=17 Score=29.14 Aligned_cols=22 Identities=36% Similarity=0.857 Sum_probs=17.5
Q ss_pred ccCCCeEEee-----cCCCCchhhHHH
Q 013628 364 NWENGTLELC-----DARGGWESDWEE 385 (439)
Q Consensus 364 ~~~~~~lelC-----Da~~~We~~We~ 385 (439)
+..|.+-|+| |++..|..||++
T Consensus 20 Gv~GrSke~CPy~~~~~r~~Wl~GWRe 46 (55)
T PRK14563 20 GIAGRSKEMCPYQTLDARSQWLGGWRE 46 (55)
T ss_pred hccCCCcccCCCCCcHHHHHHHHHHHH
Confidence 4556678888 677899999986
No 5
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.82 E-value=55 Score=35.44 Aligned_cols=95 Identities=26% Similarity=0.313 Sum_probs=58.0
Q ss_pred cccccceeeccCCCCcccchhhhcccCCCCCcccchhhhh-----HhhHhHHHHHHHHHHhCCCcccEEEEEeccceecc
Q 013628 150 PRLASVRIFEPKPLNETESQVRVLTAAHSPNGIQGLLQYF-----NLVEGCLNMIEAYQKGNNFTYKWIVRTRVDGYWNL 224 (439)
Q Consensus 150 ~~l~~~rIf~P~~~~Et~~q~~vlt~~~Sp~giqGLLqyF-----~lvegC~dLIkqyekk~nfkYD~IIrTR~D~~w~~ 224 (439)
+.+|..-+|.||.+| +.. ++--.+....++++. +-+..|++=..+|.++..| .-|++-||+.
T Consensus 265 ~glA~kV~fH~KaiP---WFV----SDvt~~Df~wll~~L~~~~~~~ls~~g~k~~~~~~~Gk~------vl~~~~FWTs 331 (434)
T KOG3870|consen 265 SGLATKVRFHVKAIP---WFV----SDVTEKDFDWLLEFLRDHEDEELSAFGKKLEKFIKEGKI------VLRPHYFWTS 331 (434)
T ss_pred ccccceEEEcccCCc---eee----ecccccchHHHHHHHhccCcHHHHHHHHHHHHHHhcCcE------EEccCccccC
Confidence 467777889999998 322 223346777777774 3344556656666666554 3388999999
Q ss_pred CCCCCC---CCCCceecCCCCC---CCC-CCCcccccCch
Q 013628 225 PLDPDN---FIPDQYLVPPGSS---FGG-LNDRLGIGDLN 257 (439)
Q Consensus 225 PLp~~~---f~p~~~~VP~gs~---fGG-LNDRFaIG~~~ 257 (439)
|++-.. ..|.-|--=.-++ |-| ||.|=..|++.
T Consensus 332 ph~y~~M~~~~p~Ly~~L~~S~LvIFKGDLNYRKL~GD~~ 371 (434)
T KOG3870|consen 332 PHDYYRMPQVAPDLYDDLQKSSLVIFKGDLNYRKLTGDRK 371 (434)
T ss_pred cchhhcccccchHHHHHHhhCcEEEEeccccHHHHhccCC
Confidence 998633 2222211111111 444 99998888885
No 6
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.06 E-value=69 Score=38.09 Aligned_cols=31 Identities=26% Similarity=0.693 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhCCCcccEEEEE------eccceecc
Q 013628 194 GCLNMIEAYQKGNNFTYKWIVRT------RVDGYWNL 224 (439)
Q Consensus 194 gC~dLIkqyekk~nfkYD~IIrT------R~D~~w~~ 224 (439)
=|.|++|+..+-.||+||.++.| +.++.|+.
T Consensus 468 fCIDiLkKlA~~v~FtYDLYlVtnGKhGkk~ng~WnG 504 (1258)
T KOG1053|consen 468 FCIDILKKLARDVKFTYDLYLVTNGKHGKKINGVWNG 504 (1258)
T ss_pred hhHHHHHHHHhhcCcceEEEEecCCcccceecCcchh
Confidence 38899999999999999999986 46677764
No 7
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=20.09 E-value=1.5e+02 Score=28.16 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=40.7
Q ss_pred Ccccchhhhh----HhhHhHHHHHHHHHHhCCCcccEEEEEec---cceeccCCCCCCC--CCCceecCCCCCCCCCCCc
Q 013628 180 NGIQGLLQYF----NLVEGCLNMIEAYQKGNNFTYKWIVRTRV---DGYWNLPLDPDNF--IPDQYLVPPGSSFGGLNDR 250 (439)
Q Consensus 180 ~giqGLLqyF----~lvegC~dLIkqyekk~nfkYD~IIrTR~---D~~w~~PLp~~~f--~p~~~~VP~gs~fGGLNDR 250 (439)
.+++.+++.| ...++|.....++.++ ||.+|.||=-== =.|.+.-+|..-+ =...||.+.|.+.| .+-.
T Consensus 34 ~~~~~~~~~~e~~~~rg~av~~a~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~y~~~g~d~~-FDpe 111 (171)
T PF12000_consen 34 PGTHPYVRDFEAAVLRGQAVARAARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFYYRASGADVG-FDPE 111 (171)
T ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEEecCCCCcCC-CCCC
Confidence 4555555555 3578888888888877 999999985210 0011222222111 12456888888766 4444
Q ss_pred c
Q 013628 251 L 251 (439)
Q Consensus 251 F 251 (439)
|
T Consensus 112 ~ 112 (171)
T PF12000_consen 112 F 112 (171)
T ss_pred C
Confidence 4
No 8
>KOG4138 consensus Unchracterized conserved protein (estrogen up-regulated protein E2IG2 in human) [General function prediction only]
Probab=19.97 E-value=81 Score=27.73 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=20.9
Q ss_pred hhhhHHHHHHHHHhhcccCCCChHH
Q 013628 407 VRRCVDDFNKMKRRAFSWEAPPPED 431 (439)
Q Consensus 407 ~~eCv~~~~~f~~~w~~WdaP~~~~ 431 (439)
-.+|-.+|++|++=|+.=.+|-+++
T Consensus 60 WRqC~~qm~~FrkCwek~~g~r~~~ 84 (96)
T KOG4138|consen 60 WRQCQPQMQAFRKCWEKQQGRRQEE 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHH
Confidence 4589999999999999877776654
No 9
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=14.88 E-value=2.1e+02 Score=30.17 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=23.9
Q ss_pred CCCCCcccchhhhhHhhHhHHHHHHHHHHhCCCcccEEEEE
Q 013628 176 AHSPNGIQGLLQYFNLVEGCLNMIEAYQKGNNFTYKWIVRT 216 (439)
Q Consensus 176 ~~Sp~giqGLLqyF~lvegC~dLIkqyekk~nfkYD~IIrT 216 (439)
..||.|..|. |+.|.+|+.|-++. +++|+||..
T Consensus 155 G~~~~g~lGy------v~~a~Ei~~Q~~~~--~~fD~vVva 187 (323)
T COG2515 155 GSSPLGALGY------VRLALEIAEQAEQL--LKFDSVVVA 187 (323)
T ss_pred CcCccccccH------HHHHHHHHHHHhhc--cCCCEEEEe
Confidence 3577777444 56777888876655 999999984
No 10
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=14.16 E-value=1.3e+02 Score=28.06 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCCCCceecCCCCCCCCCCCcccccCchhHHHHh-hhccccccchhhhc-cCCChHHHHHHHHhcC-Ccee
Q 013628 230 NFIPDQYLVPPGSSFGGLNDRLGIGDLNTSIVAL-SRLSLIPQLDLAGF-RQLNSETAFKAQLTTH-HVPR 297 (439)
Q Consensus 230 ~f~p~~~~VP~gs~fGGLNDRFaIG~~~ts~aal-~RLsllp~l~a~G~-R~LnSE~~lKa~L~~~-GV~v 297 (439)
.+-|+. +.+.-=...|+.-=|.||+...|+.-| .+..-|..++|.|+ =|..++..|+..=+.. |+..
T Consensus 46 ~ltpG~-V~~r~l~~pg~~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~lapgl~l 115 (142)
T PF11072_consen 46 ELTPGK-VERRPLQLPGLQPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLAPGLPL 115 (142)
T ss_pred CcCcCc-cccceecCCCCCCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCee
Confidence 455555 223333466777779999999999999 56668889999996 7888888888533332 6665
Done!