Query 013628
Match_columns 439
No_of_seqs 44 out of 46
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 14:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013628.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013628hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lzia_ c.68.1.9 (A:) Glycosyl 28.0 59 0.0043 29.7 7.1 27 205-231 137-163 (283)
2 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 26.9 27 0.002 25.0 3.6 27 381-420 25-51 (59)
3 d2a5sa1 c.94.1.1 (A:7-142,A:14 14.5 38 0.0028 28.5 2.4 23 194-216 56-78 (277)
4 d1c0ma1 b.34.7.1 (A:217-269) D 12.9 18 0.0013 25.9 -0.3 19 367-385 5-23 (53)
5 d2crga1 a.4.1.3 (A:8-64) Metas 9.8 51 0.0037 22.8 1.3 42 378-419 3-48 (57)
6 d1fu9a_ g.37.1.2 (A:) U-shaped 9.0 59 0.0043 21.5 1.3 18 328-345 2-19 (36)
7 d1eyra_ c.68.1.13 (A:) CMP acy 8.8 1.8E+02 0.013 22.6 4.6 25 111-135 25-53 (225)
8 d1xpja_ c.108.1.18 (A:) Hypoth 8.8 1.1E+02 0.0078 24.2 3.1 26 193-218 63-88 (124)
9 d2gfqa1 c.56.7.1 (A:1-274) Hyp 8.5 1E+02 0.0073 27.8 3.2 58 200-264 61-122 (274)
10 d1ofcx2 a.4.1.13 (X:851-978) S 7.9 20 0.0014 29.5 -1.9 29 192-220 71-100 (128)
No 1
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.02 E-value=59 Score=29.65 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=21.3
Q ss_pred hCCCcccEEEEEeccceeccCCCCCCC
Q 013628 205 GNNFTYKWIVRTRVDGYWNLPLDPDNF 231 (439)
Q Consensus 205 k~nfkYD~IIrTR~D~~w~~PLp~~~f 231 (439)
..--++|+++..-+|+.+..+...+.|
T Consensus 137 ~~~~e~DyLf~~DaDm~f~~~vg~E~L 163 (283)
T d1lzia_ 137 RFLSEVDYLVCVDVDMEFRDHVGVEIL 163 (283)
T ss_dssp HHHHHCSEEEEECSSEEECSCBCGGGC
T ss_pred HhhhcCCEEEEeecceEEecccccEEe
Confidence 334579999999999999988876544
No 2
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.91 E-value=27 Score=24.99 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHhHHHHHHhhhhcccChhhhHHHHHHHHHh
Q 013628 381 SDWEEIFDRVAGKKLASARKKVRSLGVRRCVDDFNKMKRR 420 (439)
Q Consensus 381 ~~We~ifD~~~g~~~a~~r~rv~~~~~~eCv~~~~~f~~~ 420 (439)
.-|++|.+.+ | +++.||+....+++..
T Consensus 25 ~RW~~IA~~v-g------------kt~~ev~~~~k~l~e~ 51 (59)
T d2cqqa1 25 GRWEKIAHEL-G------------RSVTDVTTKAKQLKDS 51 (59)
T ss_dssp THHHHHHHHH-T------------SCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-C------------CCHHHHHHHHHHHHHh
Confidence 4699998887 6 4788999999888764
No 3
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}
Probab=14.47 E-value=38 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhCCCcccEEEEE
Q 013628 194 GCLNMIEAYQKGNNFTYKWIVRT 216 (439)
Q Consensus 194 gC~dLIkqyekk~nfkYD~IIrT 216 (439)
=|.||+++..++.||+|++++..
T Consensus 56 ~~iDl~~~ia~~lg~~~e~~~v~ 78 (277)
T d2a5sa1 56 FCIDILKKLSRTVKFTYDLYLVT 78 (277)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECC
T ss_pred eHHHHHHHHHHHhCCCEEEEEcc
Confidence 37899999999999999998753
No 4
>d1c0ma1 b.34.7.1 (A:217-269) DNA-binding domain of retroviral integrase {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=12.92 E-value=18 Score=25.85 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=15.5
Q ss_pred CCeEEeecCCCCchhhHHH
Q 013628 367 NGTLELCDARGGWESDWEE 385 (439)
Q Consensus 367 ~~~lelCDa~~~We~~We~ 385 (439)
|-.|.+=+--+.||.||+-
T Consensus 5 GP~V~vk~elg~WE~GW~l 23 (53)
T d1c0ma1 5 GPPVKIRIETGEWEKGWNV 23 (53)
T ss_dssp CCEEEEECTTSCEEEEEEE
T ss_pred CCcEEEEcccccccCCcEE
Confidence 5558888888999999963
No 5
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.78 E-value=51 Score=22.77 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=30.1
Q ss_pred CchhhHHHHHHH---HHhHHHHHHhhh-hcccChhhhHHHHHHHHH
Q 013628 378 GWESDWEEIFDR---VAGKKLASARKK-VRSLGVRRCVDDFNKMKR 419 (439)
Q Consensus 378 ~We~~We~ifD~---~~g~~~a~~r~r-v~~~~~~eCv~~~~~f~~ 419 (439)
.|.+.=.++|.+ .+|+++....+. +.+.++.|||.=.=.+++
T Consensus 3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~Kk 48 (57)
T d2crga1 3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT 48 (57)
T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 354444566665 468899888775 799999999987655443
No 6
>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.03 E-value=59 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.6
Q ss_pred CCCCCCCCCcccCCcccC
Q 013628 328 SKGPLSGAKCRPCTAVCR 345 (439)
Q Consensus 328 s~gpl~ga~crpc~~~~~ 345 (439)
|--|..+-||+-|+-.-+
T Consensus 2 sas~~~~rYC~~CDI~Fn 19 (36)
T d1fu9a_ 2 SAAEVMKKYCSTCDISFN 19 (36)
T ss_dssp CCCCCCCSEETTTTEECS
T ss_pred CccchhhhHHhhCCceeh
Confidence 456788899999986543
No 7
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
Probab=8.83 E-value=1.8e+02 Score=22.60 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=18.0
Q ss_pred cccchHHHHHHhhcC---CCCc-EEEecC
Q 013628 111 ELTGPSIIENILEVY---PNAD-LFLHSP 135 (439)
Q Consensus 111 ElT~pSI~knVL~~l---~~~D-VFlhsp 135 (439)
.+.|.++.+++|+.+ +..| |.+.+.
T Consensus 25 ~i~gkpLi~~~i~~~~~s~~~~~Iiv~td 53 (225)
T d1eyra_ 25 KMNGISLLGHTINAAISSKCFDRIIVSTD 53 (225)
T ss_dssp EETTEEHHHHHHHHHHHHTCCSEEEEEES
T ss_pred ccCCeEHHHHHHHHHHHcCCCceEEEeec
Confidence 367899999999997 3444 555554
No 8
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=8.81 E-value=1.1e+02 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHhCCCcccEEEEEec
Q 013628 193 EGCLNMIEAYQKGNNFTYKWIVRTRV 218 (439)
Q Consensus 193 egC~dLIkqyekk~nfkYD~IIrTR~ 218 (439)
+.+.++..+.=+++|+.||-++.-+|
T Consensus 63 ~~~~~~T~~wL~~~gI~Yd~Li~gKP 88 (124)
T d1xpja_ 63 IHTLPIITEWLDKHQVPYDEILVGKP 88 (124)
T ss_dssp HHTHHHHHHHHHHTTCCCSEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCceEEEECCC
Confidence 34567777777899999999998665
No 9
>d2gfqa1 c.56.7.1 (A:1-274) Hypothetical protein PH0006 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.54 E-value=1e+02 Score=27.83 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHhCCCcccEEEEEeccceeccCCCCCCCCCCceecCCC----CCCCCCCCcccccCchhHHHHhh
Q 013628 200 EAYQKGNNFTYKWIVRTRVDGYWNLPLDPDNFIPDQYLVPPG----SSFGGLNDRLGIGDLNTSIVALS 264 (439)
Q Consensus 200 kqyekk~nfkYD~IIrTR~D~~w~~PLp~~~f~p~~~~VP~g----s~fGGLNDRFaIG~~~ts~aal~ 264 (439)
++++++.+.+||.||+.- .| ...+-.|..=+||.| ..|||-+..+++.....++.++.
T Consensus 61 ~~~~~~~~~~~d~iif~S----rH---~s~s~~p~LTvH~~Gn~~~~~~GG~~~~~~~~~P~~~~~~l~ 122 (274)
T d2gfqa1 61 REIENQLGFKPEIIAFAS----RH---SSKQKLPALTTHVTGNWGKAMYGGKDESFAVAIPSAMKLSLL 122 (274)
T ss_dssp HHHHHHHSCCCSEEEEEE----EE---ECSSCCCEEEEECCEESSCCSSSSCTTEECBBCHHHHHHHHH
T ss_pred hHHHHHhCCCceEEEEEe----cc---ccCCCCceEEEeCCCCCCCcCCCCCCCccccCCCHHHHHHHH
Confidence 567889999999999821 11 122234444456665 44999999999998876666543
No 10
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=7.94 E-value=20 Score=29.49 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=22.3
Q ss_pred hHhHHHHHHHHHHhCC-CcccEEEEEeccc
Q 013628 192 VEGCLNMIEAYQKGNN-FTYKWIVRTRVDG 220 (439)
Q Consensus 192 vegC~dLIkqyekk~n-fkYD~IIrTR~D~ 220 (439)
.++|++.|++....+. |++||.+++|+..
T Consensus 71 ~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~ 100 (128)
T d1ofcx2 71 KENVYEELRAAIRASPQFRFDWFIKSRTAL 100 (128)
T ss_dssp STTHHHHHHHHHHHCGGGTTCHHHHTCCHH
T ss_pred CccHHHHHHHHHHhCcchhhhhHhccCCHH
Confidence 3467888887765555 9999999999764
Done!