Query 013629
Match_columns 439
No_of_seqs 252 out of 588
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 97.9 1.2E-05 2.6E-10 50.8 3.4 21 96-116 1-21 (21)
2 KOG0160 Myosin class V heavy c 97.6 0.00021 4.7E-09 80.6 9.2 66 93-162 670-736 (862)
3 PF13178 DUF4005: Protein of u 97.4 0.00014 3E-09 62.8 4.2 41 329-389 34-79 (102)
4 smart00015 IQ Short calmodulin 97.4 0.00014 3E-09 48.0 2.8 22 95-116 2-23 (26)
5 KOG0160 Myosin class V heavy c 96.8 0.0042 9.1E-08 70.5 8.9 67 92-161 692-758 (862)
6 KOG0520 Uncharacterized conser 96.8 0.00099 2.1E-08 75.9 3.7 74 94-167 808-889 (975)
7 PTZ00014 myosin-A; Provisional 96.4 0.0055 1.2E-07 69.5 6.5 41 97-137 778-819 (821)
8 KOG2128 Ras GTPase-activating 95.0 0.063 1.4E-06 63.4 7.7 74 91-164 559-642 (1401)
9 COG5022 Myosin heavy chain [Cy 94.7 0.078 1.7E-06 63.0 7.7 68 93-161 742-810 (1463)
10 PF00612 IQ: IQ calmodulin-bin 94.5 0.039 8.6E-07 34.7 2.7 19 119-137 2-20 (21)
11 KOG0164 Myosin class I heavy c 93.7 0.25 5.4E-06 55.7 8.4 58 94-162 694-752 (1001)
12 KOG0520 Uncharacterized conser 91.9 0.39 8.5E-06 55.6 7.2 65 96-160 833-930 (975)
13 smart00015 IQ Short calmodulin 91.6 0.18 3.9E-06 33.1 2.5 19 119-137 4-22 (26)
14 PTZ00014 myosin-A; Provisional 90.6 0.64 1.4E-05 53.3 7.3 40 120-162 779-818 (821)
15 KOG0163 Myosin class VI heavy 83.0 23 0.0005 41.1 13.6 35 93-127 810-845 (1259)
16 KOG2128 Ras GTPase-activating 81.5 2.6 5.6E-05 50.7 5.9 61 100-163 539-611 (1401)
17 KOG4427 E3 ubiquitin protein l 81.4 1.6 3.4E-05 49.9 4.0 24 93-116 27-50 (1096)
18 KOG0942 E3 ubiquitin protein l 79.8 1.5 3.2E-05 50.8 3.2 26 91-116 24-49 (1001)
19 KOG0161 Myosin class II heavy 77.2 5.2 0.00011 50.0 6.9 39 120-158 775-813 (1930)
20 KOG0377 Protein serine/threoni 74.3 4.8 0.0001 43.8 4.9 43 93-135 14-57 (631)
21 KOG0161 Myosin class II heavy 63.7 27 0.0006 44.0 8.9 45 93-137 770-818 (1930)
22 KOG0162 Myosin class I heavy c 61.4 7.1 0.00015 44.8 3.2 38 97-137 697-735 (1106)
23 COG5022 Myosin heavy chain [Cy 54.8 1.2E+02 0.0027 37.4 11.9 50 99-151 771-823 (1463)
24 PF08763 Ca_chan_IQ: Voltage g 49.5 19 0.00041 26.3 2.7 21 95-115 8-28 (35)
25 KOG0165 Microtubule-associated 40.4 76 0.0017 37.0 6.9 35 93-127 940-975 (1023)
26 PF15157 IQ-like: IQ-like 30.4 44 0.00095 29.1 2.5 21 96-116 47-67 (97)
27 KOG0163 Myosin class VI heavy 22.2 93 0.002 36.5 3.8 21 120-140 815-835 (1259)
28 KOG0942 E3 ubiquitin protein l 21.7 1.2E+02 0.0026 35.9 4.6 26 117-142 28-53 (1001)
29 KOG4427 E3 ubiquitin protein l 21.4 2.3E+02 0.0051 33.4 6.7 24 119-142 31-54 (1096)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.92 E-value=1.2e-05 Score=50.79 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 013629 96 EWAATCIQTAFRGFLARRALR 116 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~r 116 (439)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999985
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.59 E-value=0.00021 Score=80.61 Aligned_cols=66 Identities=29% Similarity=0.312 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 93 VREEWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~raLK-giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
.....+++.||..||||+.|+.|..++ +++.+|+++||++.|+ ..+ ...|++.||..+|++..|+.
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHH
Confidence 445568888999999999999999554 8899999999999998 222 56677777777777776664
No 3
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=97.44 E-value=0.00014 Score=62.76 Aligned_cols=41 Identities=41% Similarity=0.591 Sum_probs=36.8
Q ss_pred Ccch-hhhcccCCCCCCCchhhhhhhcCCCCCCccCCCCCccccccCC----CccccccccCCCCC
Q 013629 329 MLEA-TATQLAKPKSKPPVEDLMEEANSRPAGISSRSHSNPKERTTQS----DKPVKKRLSLPNNA 389 (439)
Q Consensus 329 ~~~~-~~~~s~k~k~k~~~~~~~~e~~s~p~~~~~rs~snpKer~~~~----d~~~kkrlSlp~~~ 389 (439)
+|.| ++|+|+|+| .||.|.||+|+... ...+++|+|||...
T Consensus 34 ~PsYMa~TeSakAK--------------------~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~ 79 (102)
T PF13178_consen 34 LPSYMAATESAKAK--------------------ARSQSAPRQRPGTPERAEKQSSKKRLSLPGSS 79 (102)
T ss_pred CCCccchhhhhhhh--------------------hhccCCcccCCCccccccccccccccccCCCC
Confidence 9999 999999999 89999999999984 46789999999654
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.41 E-value=0.00014 Score=48.01 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 013629 95 EEWAATCIQTAFRGFLARRALR 116 (439)
Q Consensus 95 ee~AAI~IQsafRGyLARR~~r 116 (439)
++.||+.||+.||||++|+.|+
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999984
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.81 E-value=0.0042 Score=70.51 Aligned_cols=67 Identities=27% Similarity=0.252 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013629 92 VVREEWAATCIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRL 161 (439)
Q Consensus 92 ~~ree~AAI~IQsafRGyLARR~~raLKgiVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~ 161 (439)
++....+++.||+.+||+++|+........+.+|..+|+++.|+++... ..+++.||+.+|+..+|.
T Consensus 692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 4677889999999999999998333445789999999999999999544 789999999999999997
No 6
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.77 E-value=0.00099 Score=75.94 Aligned_cols=74 Identities=30% Similarity=0.356 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q 013629 94 REEWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITLR-------CMQALVRVQARVRARRVRLALES 165 (439)
Q Consensus 94 ree~AAI~IQsafRGyLARR~~raLK-giVrLQAlvRG~lVRrQa~~tlr-------~mqAaVrIQs~vRgrr~R~s~E~ 165 (439)
.-..||..||.-||||+.|+.|..++ -+|+||+.+|||.+|++|..... -..++-++|+-+|++..|...|.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 34468999999999999999999666 69999999999999999973222 45667779999999998887655
Q ss_pred hh
Q 013629 166 QT 167 (439)
Q Consensus 166 q~ 167 (439)
+.
T Consensus 888 ~~ 889 (975)
T KOG0520|consen 888 QE 889 (975)
T ss_pred cc
Confidence 53
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.41 E-value=0.0055 Score=69.52 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHH-hhhHHHHHHHhhhhHHHHHH
Q 013629 97 WAATCIQTAFRGFLARRALRA-LKGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 97 ~AAI~IQsafRGyLARR~~ra-LKgiVrLQAlvRG~lVRrQa 137 (439)
..++.||++||||++|+.|.. +.++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999985 55899999999999998753
No 8
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.96 E-value=0.063 Score=63.44 Aligned_cols=74 Identities=27% Similarity=0.382 Sum_probs=59.7
Q ss_pred hHHH-HHHHHHHHHHHhhhHHH---HHHHH--HhhhHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 013629 91 QVVR-EEWAATCIQTAFRGFLA---RRALR--ALKGLVRLQALVRGHAVRKQAAITL----RCMQALVRVQARVRARRVR 160 (439)
Q Consensus 91 e~~r-ee~AAI~IQsafRGyLA---RR~~r--aLKgiVrLQAlvRG~lVRrQa~~tl----r~mqAaVrIQs~vRgrr~R 160 (439)
.++. .....+.||.++|||+. +..+. ..+-+|.+|++.||+++|+.+...+ .||.+.+.||+.+|++..|
T Consensus 559 ~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r 638 (1401)
T KOG2128|consen 559 DFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNR 638 (1401)
T ss_pred hHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccc
Confidence 4444 56789999999999993 22332 5668999999999999999997544 4999999999999999998
Q ss_pred Hhhh
Q 013629 161 LALE 164 (439)
Q Consensus 161 ~s~E 164 (439)
....
T Consensus 639 ~~y~ 642 (1401)
T KOG2128|consen 639 KDYK 642 (1401)
T ss_pred hHHH
Confidence 7643
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=94.73 E-value=0.078 Score=62.99 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-HhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRALR-ALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRL 161 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~r-aLKgiVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~ 161 (439)
..-...+++||++|||++.|+.|. +++.+..+|.+.+|..+|+.+...+ -..+.+++|..+|...-|.
T Consensus 742 ~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r~ 810 (1463)
T COG5022 742 AKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSRK 810 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhHH
Confidence 445679999999999999999988 7888888888888888886654332 2566777777777655543
No 10
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.55 E-value=0.039 Score=34.70 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.0
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 013629 119 KGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 119 KgiVrLQAlvRG~lVRrQa 137 (439)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999876
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=93.65 E-value=0.25 Score=55.72 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhh-HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 94 REEWAATCIQTAFRGFLARRALRALKG-LVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 94 ree~AAI~IQsafRGyLARR~~raLKg-iVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
+--.-|+.||.+|||+++|..|+.++. ++.++ ..|.|-++ ..+-.||.++|+.+.++.
T Consensus 694 ~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~k----------s~v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 694 RLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLK----------SYVQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHhhhhccc
Confidence 334578999999999999999998885 44444 56644333 345568889999877654
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=91.92 E-value=0.39 Score=55.61 Aligned_cols=65 Identities=28% Similarity=0.328 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh-h----------HHHHHHHhhhhHHHHHHH----------------------HHHH
Q 013629 96 EWAATCIQTAFRGFLARRALRALK-G----------LVRLQALVRGHAVRKQAA----------------------ITLR 142 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raLK-g----------iVrLQAlvRG~lVRrQa~----------------------~tlr 142 (439)
..=+|+||+++|||..|+.|+.|- + .-++|.-+||+..|.-+. ...+
T Consensus 833 r~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r 912 (975)
T KOG0520|consen 833 RQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEER 912 (975)
T ss_pred CCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999432 1 223488888887765332 2233
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013629 143 CMQALVRVQARVRARRVR 160 (439)
Q Consensus 143 ~mqAaVrIQs~vRgrr~R 160 (439)
--+|+++||+.+|....+
T Consensus 913 ~~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 913 LTRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHHhcCHHHH
Confidence 457999999999987776
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=91.59 E-value=0.18 Score=33.13 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.6
Q ss_pred hhHHHHHHHhhhhHHHHHH
Q 013629 119 KGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 119 KgiVrLQAlvRG~lVRrQa 137 (439)
+.++.||+.+||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4688899999999999887
No 14
>PTZ00014 myosin-A; Provisional
Probab=90.60 E-value=0.64 Score=53.26 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=34.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 120 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 120 giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
-++.||+.+||++.|+.+. +..++++.||+.+|++..++.
T Consensus 779 ~~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 4668899999999999984 447899999999999988754
No 15
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.00 E-value=23 Score=41.12 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-HhhhHHHHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRALR-ALKGLVRLQAL 127 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~r-aLKgiVrLQAl 127 (439)
.-...+.+++|...||||+|+.++ .+-|+.++-+|
T Consensus 810 ~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 810 IYRAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 334557888999999999999888 45555555443
No 16
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=81.52 E-value=2.6 Score=50.65 Aligned_cols=61 Identities=30% Similarity=0.275 Sum_probs=47.5
Q ss_pred HHHHHHhhhHHHHHHHHHhh--------hHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 013629 100 TCIQTAFRGFLARRALRALK--------GLVRLQALVRGHAVRKQAAI----TLRCMQALVRVQARVRARRVRLAL 163 (439)
Q Consensus 100 I~IQsafRGyLARR~~raLK--------giVrLQAlvRG~lVRrQa~~----tlr~mqAaVrIQs~vRgrr~R~s~ 163 (439)
.+||+.+|||..|-+++... .++.+|+++||+++ +.. ......-+|++|+..|+...|...
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 34599999999999998543 47888999999986 221 122456789999999999999763
No 17
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.37 E-value=1.6 Score=49.89 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRALR 116 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~r 116 (439)
.+.+.||+.||..+|||++|+.+.
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999988
No 18
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.83 E-value=1.5 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHH
Q 013629 91 QVVREEWAATCIQTAFRGFLARRALR 116 (439)
Q Consensus 91 e~~ree~AAI~IQsafRGyLARR~~r 116 (439)
+..++|.+||+||+.||||++|+.++
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHH
Confidence 44677899999999999999999887
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=77.19 E-value=5.2 Score=49.99 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=28.5
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013629 120 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARR 158 (439)
Q Consensus 120 giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr 158 (439)
-|+.+||.||||++|+.+...+..+.|+..||..+|.+.
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777777777777777777777764
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=74.28 E-value=4.8 Score=43.81 Aligned_cols=43 Identities=28% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHh-hhhHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRALRALKGLVRLQALV-RGHAVRK 135 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~raLKgiVrLQAlv-RG~lVRr 135 (439)
.+.-.||+.||.-||+|.||...+..-...-+|++= -|.+-.-
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqslEYA~eQdQ~ 57 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSLEYAGEQDQA 57 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcCccchH
Confidence 455789999999999999999988655666677753 3444333
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=63.68 E-value=27 Score=44.00 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH----hhhHHHHHHHhhhhHHHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRALRA----LKGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~ra----LKgiVrLQAlvRG~lVRrQa 137 (439)
.....-.+.+|+++||||+|+.|.. +-+|..||.=+|-++..+..
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3344567889999999999999983 33888899988888766654
No 22
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=61.37 E-value=7.1 Score=44.80 Aligned_cols=38 Identities=32% Similarity=0.469 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhh-HHHHHHHhhhhHHHHHH
Q 013629 97 WAATCIQTAFRGFLARRALRALKG-LVRLQALVRGHAVRKQA 137 (439)
Q Consensus 97 ~AAI~IQsafRGyLARR~~raLKg-iVrLQAlvRG~lVRrQa 137 (439)
-=|.+||.|||.|++||.|-.+|- ... |+-|.--||.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 368999999999999999988772 122 34455555554
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=54.76 E-value=1.2e+02 Score=37.41 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=28.2
Q ss_pred HHHHHHHhhhHHHHHHHH---HhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013629 99 ATCIQTAFRGFLARRALR---ALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQ 151 (439)
Q Consensus 99 AI~IQsafRGyLARR~~r---aLKgiVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQ 151 (439)
...||..-+|++.|+.+. -++..++||.+++.+.-|+.+... ...+..+|
T Consensus 771 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~---~~~i~~lq 823 (1463)
T COG5022 771 IKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSY---LACIIKLQ 823 (1463)
T ss_pred HHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHH---HHHHHHHH
Confidence 334444455666665554 344667777777777777666433 33444455
No 24
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=49.55 E-value=19 Score=26.26 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 013629 95 EEWAATCIQTAFRGFLARRAL 115 (439)
Q Consensus 95 ee~AAI~IQsafRGyLARR~~ 115 (439)
.--||.+||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999863
No 25
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=40.36 E-value=76 Score=37.04 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH-HhhhHHHHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRALR-ALKGLVRLQAL 127 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~r-aLKgiVrLQAl 127 (439)
+....||+.||.+.|||.+|+.|+ .+-.|-.+-++
T Consensus 940 enkKkaavviqkmirgfiarrkfqmeisniRnrmiq 975 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQMEISNIRNRMIQ 975 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344679999999999999999998 44444444443
No 26
>PF15157 IQ-like: IQ-like
Probab=30.35 E-value=44 Score=29.11 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 013629 96 EWAATCIQTAFRGFLARRALR 116 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~r 116 (439)
|.-+..||.+||-|++|....
T Consensus 47 eskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCCc
Confidence 445788999999999997643
No 27
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.17 E-value=93 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=17.9
Q ss_pred hHHHHHHHhhhhHHHHHHHHH
Q 013629 120 GLVRLQALVRGHAVRKQAAIT 140 (439)
Q Consensus 120 giVrLQAlvRG~lVRrQa~~t 140 (439)
.++++|+.+||+++|+++...
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPR 835 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchH
Confidence 478889999999999998644
No 28
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=1.2e+02 Score=35.91 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.7
Q ss_pred HhhhHHHHHHHhhhhHHHHHHHHHHH
Q 013629 117 ALKGLVRLQALVRGHAVRKQAAITLR 142 (439)
Q Consensus 117 aLKgiVrLQAlvRG~lVRrQa~~tlr 142 (439)
..++.|.+|.++||+.+|++.....|
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998865444
No 29
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=2.3e+02 Score=33.38 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.6
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHH
Q 013629 119 KGLVRLQALVRGHAVRKQAAITLR 142 (439)
Q Consensus 119 KgiVrLQAlvRG~lVRrQa~~tlr 142 (439)
...+.||+.+|||++|+.+...++
T Consensus 31 ~aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 31 AAALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999874433
Done!