Query 013629
Match_columns 439
No_of_seqs 252 out of 588
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 2.9E-10 9.8E-15 86.2 7.6 53 94-147 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.8 7.3E-09 2.5E-13 75.5 6.3 42 96-137 3-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.7 1.9E-08 6.5E-13 113.6 10.0 69 93-162 813-882 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.7 3.1E-08 1.1E-12 111.9 10.9 68 96-164 768-836 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.1 7.6E-06 2.6E-10 59.4 6.7 43 119-162 4-46 (48)
6 2l53_B CAM, voltage-gated sodi 97.8 1E-05 3.6E-10 55.5 2.8 24 93-116 3-26 (31)
7 2kxw_B Sodium channel protein 97.7 1.6E-05 5.6E-10 53.0 2.5 22 93-114 3-24 (27)
8 2ix7_C Myosin-5A; contractIle 97.6 0.00022 7.4E-09 53.6 7.2 43 119-164 6-48 (58)
9 1wdc_A Scallop myosin; calcium 97.3 0.0006 2E-08 52.4 6.5 39 97-135 7-49 (64)
10 2bl0_A Major plasmodial myosin 97.2 0.0005 1.7E-08 52.8 5.9 41 121-161 7-47 (63)
11 1wdc_A Scallop myosin; calcium 97.2 0.00058 2E-08 52.5 6.3 44 119-162 7-50 (64)
12 2bl0_A Major plasmodial myosin 97.1 0.00055 1.9E-08 52.6 5.0 42 96-137 4-49 (63)
13 1kk8_A Myosin heavy chain, str 96.9 0.001 3.4E-08 73.9 6.5 42 96-137 779-824 (837)
14 3gn4_A Myosin-VI; unconvention 96.1 0.0059 2E-07 55.2 5.2 35 94-128 43-78 (148)
15 1i84_S Smooth muscle myosin he 95.7 0.0098 3.4E-07 67.7 6.0 42 96-137 792-837 (1184)
16 1kk8_A Myosin heavy chain, str 95.0 0.041 1.4E-06 61.1 8.0 43 120-162 781-823 (837)
17 1i84_S Smooth muscle myosin he 92.7 0.17 5.8E-06 57.7 7.4 43 120-162 794-836 (1184)
18 4dck_A Sodium channel protein 92.4 0.1 3.4E-06 48.0 4.1 28 90-117 124-151 (168)
19 1w7j_A Myosin VA; motor protei 88.9 0.28 9.4E-06 54.3 4.3 25 96-120 768-792 (795)
20 4anj_A Unconventional myosin-V 86.4 1.1 3.7E-05 51.1 7.2 41 96-137 775-816 (1052)
21 3gn4_A Myosin-VI; unconvention 74.0 5.8 0.0002 35.7 6.2 32 120-151 47-78 (148)
22 4anj_A Unconventional myosin-V 56.4 13 0.00043 42.6 5.9 42 118-162 774-815 (1052)
23 2ycu_A Non muscle myosin 2C, a 40.7 16 0.00055 41.3 3.6 39 123-164 769-807 (995)
24 3bxl_B CAM, voltage-dependent 35.0 25 0.00086 23.2 2.3 18 97-114 3-20 (26)
25 3dvk_B Voltage-dependent R-typ 32.9 17 0.00059 23.3 1.3 19 95-113 5-23 (23)
26 2f3y_B Voltage-dependent L-typ 31.5 29 0.00098 22.9 2.1 19 98-116 4-22 (26)
27 2be6_D Voltage-dependent L-typ 29.6 39 0.0013 23.9 2.7 21 95-115 10-30 (37)
28 1w7j_A Myosin VA; motor protei 28.5 41 0.0014 37.3 4.2 18 120-137 770-787 (795)
29 1m46_B IQ4, IQ4 motif from MYO 20.8 93 0.0032 20.1 3.0 21 117-137 2-22 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.08 E-value=2.9e-10 Score=86.15 Aligned_cols=53 Identities=30% Similarity=0.375 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 013629 94 REEWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITLRCMQAL 147 (439)
Q Consensus 94 ree~AAI~IQsafRGyLARR~~raLK-giVrLQAlvRG~lVRrQa~~tlr~mqAa 147 (439)
+.+.|||.||+.||||++|+.|..++ ++|.||+.+||+++|+.+. .++...|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence 46789999999999999999999776 8999999999999999994 44444444
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.81 E-value=7.3e-09 Score=75.48 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh---hHHHHHHHhhhhHHHHHH
Q 013629 96 EWAATCIQTAFRGFLARRALRALK---GLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raLK---giVrLQAlvRG~lVRrQa 137 (439)
..|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 358999999999999999998554 789999999999999875
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.74 E-value=1.9e-08 Score=113.60 Aligned_cols=69 Identities=28% Similarity=0.373 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 93 VREEWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~raLK-giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
++++.||+.||++||||++|+.|..++ +++.||+.+||+++|+.+. .++...+++.||+.+|++.+|+.
T Consensus 813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l~R~~ 882 (1080)
T 2dfs_A 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWLARVH 882 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTHHHHH
T ss_pred cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666433 5666666666666666653 23334455555555555555543
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.72 E-value=3.1e-08 Score=111.90 Aligned_cols=68 Identities=31% Similarity=0.386 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013629 96 EWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALE 164 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raLK-giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s~E 164 (439)
..||+.||++||||++|+.|+.++ +++.||+.+||+++|+.+ ..++...|++.||+.+|++.+|+...
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y~ 836 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRYQ 836 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHHH
Confidence 579999999999999999999665 899999999999999998 45678899999999999999998643
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.09 E-value=7.6e-06 Score=59.39 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=37.8
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 119 KGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 119 KgiVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
+++|.||+.+||+++|+.+ ..++...|++.||+.+||+.+|..
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHh
Confidence 4789999999999999999 445667799999999999999864
No 6
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.80 E-value=1e-05 Score=55.52 Aligned_cols=24 Identities=46% Similarity=0.560 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRALR 116 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~~r 116 (439)
.+||.||+.||.|||+||.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468999999999999999998754
No 7
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.71 E-value=1.6e-05 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 013629 93 VREEWAATCIQTAFRGFLARRA 114 (439)
Q Consensus 93 ~ree~AAI~IQsafRGyLARR~ 114 (439)
.+||.||+.||.|||+||.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999864
No 8
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.55 E-value=0.00022 Score=53.64 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=37.2
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013629 119 KGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALE 164 (439)
Q Consensus 119 KgiVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s~E 164 (439)
..+|.||+.+||+++|+.|.. ...+++.||+.+||+.+|+...
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999943 3579999999999999997644
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.25 E-value=0.0006 Score=52.45 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHHhhhhHHHH
Q 013629 97 WAATCIQTAFRGFLARRALRAL----KGLVRLQALVRGHAVRK 135 (439)
Q Consensus 97 ~AAI~IQsafRGyLARR~~raL----KgiVrLQAlvRG~lVRr 135 (439)
..++.||+++|||++|+.|..+ .++..||.-+|+++.++
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555555555555532 13334455555554444
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.24 E-value=0.0005 Score=52.78 Aligned_cols=41 Identities=22% Similarity=0.086 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013629 121 LVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRL 161 (439)
Q Consensus 121 iVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~ 161 (439)
++.|||.+||+++|+.+...+....|+..||..+|++..++
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555555555555555555555555556666666655543
No 11
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.24 E-value=0.00058 Score=52.50 Aligned_cols=44 Identities=25% Similarity=0.163 Sum_probs=39.5
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 119 KGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 119 KgiVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
.-++.|||.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 35889999999999999999888888999999999999988764
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.12 E-value=0.00055 Score=52.58 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHHhhhhHHHHHH
Q 013629 96 EWAATCIQTAFRGFLARRALRAL----KGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raL----KgiVrLQAlvRG~lVRrQa 137 (439)
...++.||+.+|||++|+.|..+ .++..||.-+|+++.++..
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 35789999999999999999955 3777899999999998754
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.89 E-value=0.001 Score=73.87 Aligned_cols=42 Identities=29% Similarity=0.390 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHHhhhhHHHHHH
Q 013629 96 EWAATCIQTAFRGFLARRALRAL----KGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raL----KgiVrLQAlvRG~lVRrQa 137 (439)
..+|+.||++||||++|+.|+.+ .+++.||..+||+++||..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 45788999999999999999865 3788888888888888765
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.11 E-value=0.0059 Score=55.16 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH-HhhhHHHHHHHh
Q 013629 94 REEWAATCIQTAFRGFLARRALR-ALKGLVRLQALV 128 (439)
Q Consensus 94 ree~AAI~IQsafRGyLARR~~r-aLKgiVrLQAlv 128 (439)
-...|+|+||++.||||+|+.++ .+.|++++.+|.
T Consensus 43 yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 43 YRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34567778888888888888777 567777776643
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.69 E-value=0.0098 Score=67.73 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHh----hhHHHHHHHhhhhHHHHHH
Q 013629 96 EWAATCIQTAFRGFLARRALRAL----KGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raL----KgiVrLQAlvRG~lVRrQa 137 (439)
..+|+.||+.||||++|+.|..+ .+++.||..+||++.|+.+
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36899999999999999999965 3899999999999999764
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.04 E-value=0.041 Score=61.14 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=38.2
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 120 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 120 giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
.++.||+.+||+++|+.+...+....|++.||..+|++..|+.
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5789999999999999997766667899999999999998864
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.69 E-value=0.17 Score=57.70 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=38.1
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 120 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 120 giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
.++.||+.+||+++|+.+...+....|++.||+.+|++..++.
T Consensus 794 ~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999997776678999999999999988753
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=92.41 E-value=0.1 Score=47.99 Aligned_cols=28 Identities=39% Similarity=0.475 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 013629 90 QQVVREEWAATCIQTAFRGFLARRALRA 117 (439)
Q Consensus 90 ~e~~ree~AAI~IQsafRGyLARR~~ra 117 (439)
....+|+.||+.||.|||.|+.|+.+..
T Consensus 124 ~~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 124 LRRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3557899999999999999999988764
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=88.91 E-value=0.28 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhh
Q 013629 96 EWAATCIQTAFRGFLARRALRALKG 120 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raLKg 120 (439)
..+|+.||++||||++|+.|+.++.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999997764
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.36 E-value=1.1 Score=51.14 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh-hHHHHHHHhhhhHHHHHH
Q 013629 96 EWAATCIQTAFRGFLARRALRALK-GLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 96 e~AAI~IQsafRGyLARR~~raLK-giVrLQAlvRG~lVRrQa 137 (439)
+.+|+.||. +|||++|+.|+.++ ..+.+|.+.|+...|+..
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777774 68999999988655 677777777776665543
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=73.95 E-value=5.8 Score=35.74 Aligned_cols=32 Identities=6% Similarity=0.177 Sum_probs=22.4
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 013629 120 GLVRLQALVRGHAVRKQAAITLRCMQALVRVQ 151 (439)
Q Consensus 120 giVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQ 151 (439)
.+|.+|..||||++|+++...+..+.-+..+.
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57888999999999999866544443333343
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=56.39 E-value=13 Score=42.58 Aligned_cols=42 Identities=12% Similarity=-0.045 Sum_probs=30.7
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013629 118 LKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLA 162 (439)
Q Consensus 118 LKgiVrLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s 162 (439)
+..++.+|..+||+++|+++.. -.++++.||...|.++.|..
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~k---~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWKK---VQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4456667777999999999943 35677788877777766654
No 23
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=40.74 E-value=16 Score=41.30 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=24.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013629 123 RLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALE 164 (439)
Q Consensus 123 rLQAlvRG~lVRrQa~~tlr~mqAaVrIQs~vRgrr~R~s~E 164 (439)
.|+..+|+...+.+. .+.-.+++.||+.+|+++.++..+
T Consensus 769 ~Ll~WIr~k~a~l~~---r~~~~sl~~IQ~~ir~f~~fr~~e 807 (995)
T 2ycu_A 769 ELVQWINDKQASLES---RDFGDSIESVQSFMNAHKEYKKTE 807 (995)
T ss_dssp HHHHHTTTTTCCCSC---HHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHh
Confidence 456667776665443 233567777777777776665543
No 24
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=34.98 E-value=25 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 013629 97 WAATCIQTAFRGFLARRA 114 (439)
Q Consensus 97 ~AAI~IQsafRGyLARR~ 114 (439)
-||.+||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999999886
No 25
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=32.91 E-value=17 Score=23.34 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhHHHHH...
Q 013629 95 EEWAATCIQTAFRGFLARR... 113 (439)
Q Consensus 95 ee~AAI~IQsafRGyLARR... 113 (439)
.--|+..||-.||-+..|+
T Consensus 5 KiYA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHHHhccC...
Confidence 3468999999999988763
No 26
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=31.46 E-value=29 Score=22.88 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 013629 98 AATCIQTAFRGFLARRALR 116 (439)
Q Consensus 98 AAI~IQsafRGyLARR~~r 116 (439)
|-..||-.||.|..|+.-.
T Consensus 4 at~LIqdyfRkfkkrke~~ 22 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQX 22 (26)
T ss_pred hhhhHHHHHHHHHHhHHhh
Confidence 5678999999999988643
No 27
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=29.55 E-value=39 Score=23.94 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 013629 95 EEWAATCIQTAFRGFLARRAL 115 (439)
Q Consensus 95 ee~AAI~IQsafRGyLARR~~ 115 (439)
.--|-..||-.||.|..|+.-
T Consensus 10 KfYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999999875
No 28
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=28.54 E-value=41 Score=37.29 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=10.3
Q ss_pred hHHHHHHHhhhhHHHHHH
Q 013629 120 GLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 120 giVrLQAlvRG~lVRrQa 137 (439)
.++.||+.+||+++|+++
T Consensus 770 ~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 770 ACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555555555
No 29
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.79 E-value=93 Score=20.07 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.6
Q ss_pred HhhhHHHHHHHhhhhHHHHHH
Q 013629 117 ALKGLVRLQALVRGHAVRKQA 137 (439)
Q Consensus 117 aLKgiVrLQAlvRG~lVRrQa 137 (439)
.|+.|..||.-||-.+-.+|+
T Consensus 2 vlrtitnlqkkirkelkqrql 22 (26)
T 1m46_B 2 VLRTITNLQKKIRKELKQRQL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888887776
Done!