Your job contains 1 sequence.
>013632
MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP
HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL
EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED
KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL
LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG
SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA
PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV
VVNLKNLECHTLSFGTQFS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013632
(439 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2060010 - symbol:POLD2 "DNA polymerase delta s... 1789 2.0e-184 1
ZFIN|ZDB-GENE-030616-157 - symbol:pold2 "polymerase (DNA ... 872 2.9e-87 1
MGI|MGI:1097163 - symbol:Pold2 "polymerase (DNA directed)... 866 1.3e-86 1
UNIPROTKB|F1SSF8 - symbol:POLD2 "Uncharacterized protein"... 862 3.3e-86 1
UNIPROTKB|H9GW60 - symbol:POLD2 "Uncharacterized protein"... 857 1.1e-85 1
UNIPROTKB|P49004 - symbol:POLD2 "DNA polymerase delta sub... 856 1.4e-85 1
RGD|1304954 - symbol:Pold2 "polymerase (DNA directed), de... 854 2.4e-85 1
UNIPROTKB|P49005 - symbol:POLD2 "DNA polymerase delta sub... 852 3.8e-85 1
UNIPROTKB|F8W8R3 - symbol:POLD2 "DNA polymerase delta sub... 767 3.9e-76 1
DICTYBASE|DDB_G0281641 - symbol:polD2 "DNA polymerase del... 758 3.5e-75 1
FB|FBgn0027903 - symbol:CG12018 species:7227 "Drosophila ... 695 1.7e-68 1
GENEDB_PFALCIPARUM|PFC0340w - symbol:PFC0340w "DNA polyme... 368 2.8e-58 3
CGD|CAL0003049 - symbol:HYS2 species:5476 "Candida albica... 592 1.4e-57 1
SGD|S000003766 - symbol:POL31 "Subunit of DNA polymerase ... 318 1.3e-51 2
POMBASE|SPAC27E2.05 - symbol:cdc1 "DNA polymerase delta s... 460 1.3e-43 1
ASPGD|ASPL0000009421 - symbol:AN10470 species:162425 "Eme... 240 9.9e-41 3
UNIPROTKB|C9JHC7 - symbol:POLD2 "DNA polymerase delta sub... 306 4.3e-32 2
UNIPROTKB|C9JLE1 - symbol:POLD2 "DNA polymerase delta sub... 276 6.1e-24 1
WB|WBGene00008722 - symbol:F12F6.7 species:6239 "Caenorha... 288 1.3e-23 1
UNIPROTKB|C9IZD2 - symbol:POLD2 "DNA polymerase delta sub... 211 1.3e-16 1
UNIPROTKB|C9J8Z7 - symbol:POLD2 "DNA polymerase delta sub... 211 1.3e-16 1
UNIPROTKB|H7C1B3 - symbol:POLD2 "DNA polymerase delta sub... 149 8.0e-10 1
>TAIR|locus:2060010 [details] [associations]
symbol:POLD2 "DNA polymerase delta small subunit"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA;RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0007020 "microtubule nucleation"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0016570 "histone
modification" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
InterPro:IPR007185 Pfam:PF04042 EMBL:CP002685 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 KO:K02328 OMA:HWGSGVG
InterPro:IPR024826 PANTHER:PTHR10416 IPI:IPI00975273
RefSeq:NP_181742.2 UniGene:At.42746 ProteinModelPortal:F4IM00
SMR:F4IM00 PRIDE:F4IM00 EnsemblPlants:AT2G42120.1 GeneID:818812
KEGG:ath:AT2G42120 Uniprot:F4IM00
Length = 441
Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
Identities = 331/440 (75%), Positives = 376/440 (85%)
Query: 1 MEIDGEEARLQRKQATYIFL-DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWK 59
MEID E+ +RKQ+ Y L DE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK
Sbjct: 1 MEIDSEKIH-ERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWK 59
Query: 60 PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLV 119
HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+
Sbjct: 60 SHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLI 119
Query: 120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE 179
LEDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++ E
Sbjct: 120 LEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQE 179
Query: 180 DKYXXXXXXXXXXXXXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
DKY PLQFQLLVDHITGHLGDE+EQG+AA+IVHVVIAGNS E PR
Sbjct: 180 DKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRK 239
Query: 240 LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
L+NGQNLASKDQS L+EPIKELDI+L+QIAAGV +DIMPG NDPANF+LPQQPLNRCLFP
Sbjct: 240 LINGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFP 299
Query: 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPT 359
GS+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA +L+F+ERTLRWRHLAPT
Sbjct: 300 GSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPT 359
Query: 360 APNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVA 419
APNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+A
Sbjct: 360 APNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIA 419
Query: 420 VVVNLKNLECHTLSFGTQFS 439
V VNL+NLECHTLSF TQ +
Sbjct: 420 VAVNLRNLECHTLSFSTQIN 439
>ZFIN|ZDB-GENE-030616-157 [details] [associations]
symbol:pold2 "polymerase (DNA directed), delta 2,
regulatory subunit" species:7955 "Danio rerio" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 ZFIN:ZDB-GENE-030616-157
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 CTD:5425
HOVERGEN:HBG051396 KO:K02328 InterPro:IPR024826 PANTHER:PTHR10416
EMBL:AL591213 EMBL:BC066617 EMBL:BC171676 EMBL:BC171678
IPI:IPI00507461 RefSeq:NP_998468.1 UniGene:Dr.80429 STRING:Q90X40
GeneID:796456 KEGG:dre:796456 InParanoid:Q90X40 NextBio:20932616
Uniprot:Q90X40
Length = 467
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 190/441 (43%), Positives = 263/441 (59%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPI 64
EE +R + Y E F I + ++ +QY+ IY RL MR +L + W +PI
Sbjct: 19 EEPVFERAEPAYSGCSERFRIGERSF-SRQYAHIYATRLMQMRQILTERATHKWGTEVPI 77
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDES 124
+ +L+ G ECVI+GT++KHM+L+PSIL E S+E + P ++ D L+LEDE
Sbjct: 78 RKLCDLQMGEECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSDELILEDEL 137
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYX 183
R+KL G P +VTG V+A+ G E + G+F V D A + PQ PL+S D++
Sbjct: 138 QRIKLEGNIDAPK-FVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLSS--DRFV 194
Query: 184 XXXXXXXXXXXXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPR 238
+ QLLVD +TG LGDE EQ AA I V++AGN S +
Sbjct: 195 LLASGLGLNGSRADSMMGLQLLVDMVTGQLGDEGEQSGAASISRVILAGNLLSRSTQDKD 254
Query: 239 GLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
+ L K Q+ E I+ LD LL Q+ A V +D+MPG DP N++LPQQPL+RC+F
Sbjct: 255 STNKAKYLTKKTQAGSVEAIRLLDELLMQLVASVSVDVMPGQYDPTNYTLPQQPLHRCMF 314
Query: 299 PGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAP 358
P S + T + NP+ +D VRFLGT+GQ + D+ KYS +D LE +E TLR RHLAP
Sbjct: 315 PLSIPFPTLQLVINPYQAIVDGVRFLGTAGQNVSDIGKYSSVDDHLEILESTLRLRHLAP 374
Query: 359 TAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGV 418
TAP+TLGCYPF +DPF++E CPHVYF+GN ++++ + G + Q V LV IP+FS T
Sbjct: 375 TAPDTLGCYPFYQKDPFILEECPHVYFSGNAPSYQSKRVTGPEGQDVLLVAIPEFSSTQT 434
Query: 419 AVVVNLKNLECHTLSFGTQFS 439
A +VNL+ LEC +SF + FS
Sbjct: 435 ACLVNLRTLECEPISFSS-FS 454
>MGI|MGI:1097163 [details] [associations]
symbol:Pold2 "polymerase (DNA directed), delta 2, regulatory
subunit" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=ISO] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 MGI:MGI:1097163
GO:GO:0005634 GO:GO:0003677 EMBL:CH466574 GO:GO:0006261
EMBL:AL627069 GO:GO:0003887 CTD:5425 eggNOG:COG1311
GeneTree:ENSGT00390000006780 HOGENOM:HOG000189057
HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG OrthoDB:EOG41NTKZ
InterPro:IPR024826 PANTHER:PTHR10416 ChiTaRS:POLD2 EMBL:Z72486
EMBL:BC003342 IPI:IPI00132795 RefSeq:NP_032920.2 UniGene:Mm.35788
ProteinModelPortal:O35654 SMR:O35654 IntAct:O35654 STRING:O35654
PhosphoSite:O35654 PaxDb:O35654 PRIDE:O35654 DNASU:18972
Ensembl:ENSMUST00000102922 GeneID:18972 KEGG:mmu:18972
InParanoid:Q99J61 NextBio:295324 Bgee:O35654 Genevestigator:O35654
GermOnline:ENSMUSG00000020471 Uniprot:O35654
Length = 469
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 185/427 (43%), Positives = 258/427 (60%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSFN-RQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYXXXXXXXXXX 192
+ S VTG V+A+ G G F V D A LAPQK +P L++ D++
Sbjct: 148 IDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDT--DRFVLLVSGLGLG 205
Query: 193 XXXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLA 247
L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 206 GGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLT 265
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T
Sbjct: 266 KKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTL 325
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCY
Sbjct: 326 QLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCY 385
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
PF DPF+ CPHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L
Sbjct: 386 PFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSL 445
Query: 428 ECHTLSF 434
C +SF
Sbjct: 446 ACQPISF 452
>UNIPROTKB|F1SSF8 [details] [associations]
symbol:POLD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 GeneTree:ENSGT00390000006780
OMA:HWGSGVG InterPro:IPR024826 PANTHER:PTHR10416 EMBL:CU928907
Ensembl:ENSSSCT00000018235 Uniprot:F1SSF8
Length = 469
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 186/426 (43%), Positives = 259/426 (60%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSFN-RQYAHIYATRLVQMRPFLVSRARQRWGGGVVVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M+L+PSIL E S+E + P ++HPDD L+LEDE R+KL GA +
Sbjct: 90 KCCVVGTLFKAMQLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGA-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYXXXXXXXXXXX 193
S VTG V+AL G G+FLV D AGLAPQK PL++ D++
Sbjct: 149 DVSKLVTGTVLALLGSAGDDGKFLVEDHCFAGLAPQKPTRPLDT--DRFVLLVSGLGLGG 206
Query: 194 XXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLAS 248
L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 207 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 266
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 326
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 327 LVTNPYQATIDGVRFLGTSGQNVGDIFRYSGMEDHLEILEWTLQIRHISPTAPDTLGCYP 386
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 387 FYKTDPFIFLECPHVYFCGNTPSFGSKIIRGPEDQTVLLVAVPDFSSTQTACLVNLRSLT 446
Query: 429 CHTLSF 434
C +SF
Sbjct: 447 CQPISF 452
>UNIPROTKB|H9GW60 [details] [associations]
symbol:POLD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
GeneTree:ENSGT00390000006780 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 Ensembl:ENSCAFT00000004694 Uniprot:H9GW60
Length = 511
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 183/425 (43%), Positives = 254/425 (59%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
+TY + F + + ++ +QY+ IY RL MR L S +W + I + EL+ G
Sbjct: 72 STYTNSSQSFRLGERSF-SRQYAHIYATRLLQMRPFLVSRAQQHWGDGIQIKKLCELQPG 130
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G+
Sbjct: 131 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDQLVLEDELQRIKLEGS- 189
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXX 193
+ S VTG V+A+ G +G+FLV D A LAPQK P +
Sbjct: 190 IDASKLVTGTVLAVLGSVRDSGKFLVEDHCFAELAPQKPAPTLDTDRFVLLVSGLGLGGG 249
Query: 194 XXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLASK 249
L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 250 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 309
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 310 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 369
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 370 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRIRHISPTAPDTLGCYPF 429
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN +F +++ +G + Q V LV +P FS T A +VNL++L C
Sbjct: 430 YKNDPFIFPDCPHVYFCGNTPQFGSKIFRGPEDQRVLLVAVPDFSTTQTACLVNLRSLAC 489
Query: 430 HTLSF 434
+SF
Sbjct: 490 QPISF 494
>UNIPROTKB|P49004 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9913
"Bos taurus" [GO:0006260 "DNA replication" evidence=TAS]
[GO:0005634 "nucleus" evidence=IC] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 EMBL:U21091 EMBL:BC113315
IPI:IPI00694189 PIR:I46076 RefSeq:NP_776853.2 UniGene:Bt.5282
IntAct:P49004 STRING:P49004 PRIDE:P49004 Ensembl:ENSBTAT00000016237
GeneID:281991 KEGG:bta:281991 CTD:5425 eggNOG:COG1311
GeneTree:ENSGT00390000006780 HOGENOM:HOG000189057
HOVERGEN:HBG051396 InParanoid:P49004 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ BindingDB:P49004 ChEMBL:CHEMBL2762
NextBio:20805859 InterPro:IPR024826 PANTHER:PTHR10416
Uniprot:P49004
Length = 469
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 184/426 (43%), Positives = 257/426 (60%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G +
Sbjct: 90 KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYXXXXXXXXXXX 193
S VTG V+A+ G G+FLV D AGLAPQK PL++ D++
Sbjct: 149 DVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGG 206
Query: 194 XXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLAS 248
L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 207 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 266
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 326
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 327 LVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYP 386
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 387 FYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLA 446
Query: 429 CHTLSF 434
C +SF
Sbjct: 447 CQPISF 452
>RGD|1304954 [details] [associations]
symbol:Pold2 "polymerase (DNA directed), delta 2, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0043625 "delta DNA polymerase complex" evidence=IC] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007185 Pfam:PF04042
RGD:1304954 GO:GO:0003677 GO:GO:0006261 GO:GO:0003887 GO:GO:0043625
CTD:5425 eggNOG:COG1311 GeneTree:ENSGT00390000006780
HOGENOM:HOG000189057 HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ InterPro:IPR024826 PANTHER:PTHR10416
EMBL:BC079267 IPI:IPI00198398 RefSeq:NP_001013068.1
UniGene:Rn.22989 STRING:Q6AXY4 PRIDE:Q6AXY4
Ensembl:ENSRNOT00000019288 GeneID:289758 KEGG:rno:289758
UCSC:RGD:1304954 InParanoid:Q6AXY4 NextBio:630310
Genevestigator:Q6AXY4 GermOnline:ENSRNOG00000014098 Uniprot:Q6AXY4
Length = 469
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 184/427 (43%), Positives = 255/427 (59%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSFN-RQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYXXXXXXXXXX 192
+ S VTG V+A+ G G+F V D A LAPQ +P L++ D++
Sbjct: 148 IDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDT--DRFVLLVSGLGLG 205
Query: 193 XXXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLA 247
L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 206 GGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLT 265
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y T
Sbjct: 266 KKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATL 325
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCY
Sbjct: 326 QLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCY 385
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
PF DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL+ L
Sbjct: 386 PFYKTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGL 445
Query: 428 ECHTLSF 434
C +SF
Sbjct: 446 TCQPISF 452
>UNIPROTKB|P49005 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_216
InterPro:IPR007185 Pfam:PF04042 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0006284 GO:GO:0003677 GO:GO:0000084 GO:GO:0000722
Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271 GO:GO:0003887
GO:GO:0032201 GO:GO:0006297 CTD:5425 eggNOG:COG1311
HOGENOM:HOG000189057 HOVERGEN:HBG051396 KO:K02328 OMA:HWGSGVG
OrthoDB:EOG41NTKZ InterPro:IPR024826 PANTHER:PTHR10416 EMBL:U21090
EMBL:AF239710 EMBL:AY116646 EMBL:BC000459 IPI:IPI00025616
PIR:I38950 RefSeq:NP_001120690.1 RefSeq:NP_001243808.1
RefSeq:NP_006221.2 UniGene:Hs.306791 UniGene:Hs.740138 PDB:3E0J
PDBsum:3E0J ProteinModelPortal:P49005 SMR:P49005 IntAct:P49005
STRING:P49005 PhosphoSite:P49005 DMDM:1352307 PaxDb:P49005
PeptideAtlas:P49005 PRIDE:P49005 DNASU:5425 Ensembl:ENST00000406581
Ensembl:ENST00000452185 GeneID:5425 KEGG:hsa:5425 UCSC:uc003tkf.4
GeneCards:GC07M044120 HGNC:HGNC:9176 HPA:HPA026745 MIM:600815
neXtProt:NX_P49005 PharmGKB:PA33497 InParanoid:P49005
PhylomeDB:P49005 ChEMBL:CHEMBL2763 ChiTaRS:POLD2
EvolutionaryTrace:P49005 GenomeRNAi:5425 NextBio:20989
ArrayExpress:P49005 Bgee:P49005 CleanEx:HS_POLD2
Genevestigator:P49005 GermOnline:ENSG00000106628 Uniprot:P49005
Length = 469
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 184/427 (43%), Positives = 257/427 (60%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYXXXXXXXXXX 192
+ S VTG V+A+ G G+FLV D A LAPQK P L++ D++
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDT--DRFVLLVSGLGLG 205
Query: 193 XXXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP---RGLLN-GQNLA 247
L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 206 GGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLT 265
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T
Sbjct: 266 KKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTL 325
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCY
Sbjct: 326 QLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCY 385
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
PF DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 386 PFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSL 445
Query: 428 ECHTLSF 434
C +SF
Sbjct: 446 ACQPISF 452
>UNIPROTKB|F8W8R3 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 InterPro:IPR024826 PANTHER:PTHR10416 HGNC:HGNC:9176
ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00925787
ProteinModelPortal:F8W8R3 SMR:F8W8R3 Ensembl:ENST00000223361
ArrayExpress:F8W8R3 Bgee:F8W8R3 Uniprot:F8W8R3
Length = 455
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 176/427 (41%), Positives = 248/427 (58%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYXXXXXXXXXX 192
+ S VTG V+A+ G G+FLV D A LAPQK P L++ D++
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDT--DRFVLLVSGLGLG 205
Query: 193 XXXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP---RGLLN-GQNLA 247
L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 206 GGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLT 265
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T
Sbjct: 266 KKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTL 325
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TL
Sbjct: 326 QLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTL--- 382
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 383 -----------ECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSL 431
Query: 428 ECHTLSF 434
C +SF
Sbjct: 432 ACQPISF 438
>DICTYBASE|DDB_G0281641 [details] [associations]
symbol:polD2 "DNA polymerase delta subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 dictyBase:DDB_G0281641
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000042 GO:GO:0003887 eggNOG:COG1311 KO:K02328
InterPro:IPR024826 PANTHER:PTHR10416 OMA:CATGCCV RefSeq:XP_640553.1
STRING:Q54TN8 EnsemblProtists:DDB0234234 GeneID:8623163
KEGG:ddi:DDB_G0281641 InParanoid:Q54TN8 Uniprot:Q54TN8
Length = 521
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 166/410 (40%), Positives = 235/410 (57%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
QYS IY +RL + +L V + P +P +L ++ G EC++IGTLYK M+LKP+IL
Sbjct: 102 QYSSIYASRLEKLNPILVENVESKYPGIPTQKILHMKPGDECIMIGTLYKEMELKPNILK 161
Query: 95 EYSKERSTTPLV-KPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETS 153
Y+++R+ P+ +F+ D L ED +GRVKL G++ + + VTG+ VA+ GK
Sbjct: 162 AYAQDRAMLPIPDNRESFIGEKDKLFFEDNTGRVKLIGSKEMVDSLVTGLNVAILGKGLP 221
Query: 154 AGEFLVLDVLDAGLAPQKEL-PLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHITGHL 212
EF V D++ G+ PQ L S +D Q QLL+D++ G+L
Sbjct: 222 DAEFEVRDIVFPGIPPQPHSRDLESLKDDAYICLISGLNVGDANNIFQTQLLMDYLQGNL 281
Query: 213 GDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG-QNLASKD-----QSRLFEPIKELDILLT 266
D + +I V+ GNSI + +SK Q++ PIK+LD L
Sbjct: 282 VDNGSD-LLGKICKVLFVGNSIHKENEPIEAFVRYSSKSEIQAKQAKKAIPIKDLDGFLC 340
Query: 267 QIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGT 326
++ VP+DI+PGPNDP N SLPQ PLN CLFP S +CTNP+ ++ LGT
Sbjct: 341 ELCQTVPVDIIPGPNDPTNISLPQLPLNSCLFPFSIQNTNLTTCTNPYQSQIGGRLLLGT 400
Query: 327 SGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
SGQ I++ +Y +++ E TL WRHLAPTAP+TL C D DPF++E CP +YF
Sbjct: 401 SGQNIENASRYMTYENKMSLTESTLIWRHLAPTAPDTLTCAAL-DNDPFVIEQCPDIYFV 459
Query: 387 GNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
GNQ FET+LLKG + ++VRL+ IP FSET ++VNLK L+ + F T
Sbjct: 460 GNQDHFETKLLKGPNDEIVRLIFIPNFSETNTIILVNLKTLDTFPIHFNT 509
>FB|FBgn0027903 [details] [associations]
symbol:CG12018 species:7227 "Drosophila melanogaster"
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;NAS]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006260 "DNA replication" evidence=IEA;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005634 GO:GO:0005875 EMBL:AE014296 GO:GO:0007052
GO:GO:0003677 GO:GO:0006260 GO:GO:0006974 GO:GO:0003887
eggNOG:COG1311 GeneTree:ENSGT00390000006780 KO:K02328
InterPro:IPR024826 PANTHER:PTHR10416 OMA:CATGCCV EMBL:AF160903
EMBL:AY113311 RefSeq:NP_647659.1 UniGene:Dm.819
ProteinModelPortal:Q9W088 SMR:Q9W088 DIP:DIP-20333N
MINT:MINT-1686297 STRING:Q9W088 PaxDb:Q9W088 PRIDE:Q9W088
EnsemblMetazoa:FBtr0072775 GeneID:38228 KEGG:dme:Dmel_CG12018
UCSC:CG12018-RA FlyBase:FBgn0027903 InParanoid:Q9W088
OrthoDB:EOG4NCJV7 PhylomeDB:Q9W088 ChiTaRS:CG12018 GenomeRNAi:38228
NextBio:807634 Bgee:Q9W088 GermOnline:CG12018 Uniprot:Q9W088
Length = 431
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 161/431 (37%), Positives = 231/431 (53%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYXXXXX 187
L G +L TG+V A G S G F V D+L PQK L P+
Sbjct: 123 LQG-KLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGL 181
Query: 188 XXXXXXXXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL- 246
L L + G LG+ KE G +V +++AGNS+ + + L
Sbjct: 182 DQLQAHKFVEALN--LFQYWLAGSLGNNKEAG---SMVRLIVAGNSVRAS-AMAHVPTLQ 235
Query: 247 ASKDQSRL---FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
++ Q+ + + +LD A +P+DIMPGP DPANF LPQQP ++C+FP +A
Sbjct: 236 VARTQANANDTVQAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQAAQ 295
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
TF++ TNP+ LD +GTSGQ + DL + + + LE + TL W H+APTAP+T
Sbjct: 296 LATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAPDT 355
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
L CYP+ + DPF++ CPHVY+AGN + F T L +GS+ + RLVC+P FS+T VV+
Sbjct: 356 LACYPYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAVVD 415
Query: 424 LKNLECHTLSF 434
L L+C ++F
Sbjct: 416 LDTLDCRMVNF 426
>GENEDB_PFALCIPARUM|PFC0340w [details] [associations]
symbol:PFC0340w "DNA polymerase delta small
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0003677 GO:GO:0006260
EMBL:AL844502 GO:GO:0003887 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 OMA:CATGCCV PIR:T18428 RefSeq:XP_001351155.1
ProteinModelPortal:O77321 PRIDE:O77321
EnsemblProtists:PFC0340w:mRNA GeneID:814397 KEGG:pfa:PFC0340w
EuPathDB:PlasmoDB:PF3D7_0308000 HOGENOM:HOG000284166
ProtClustDB:CLSZ2500465 Uniprot:O77321
Length = 498
Score = 368 (134.6 bits), Expect = 2.8e-58, Sum P(3) = 2.8e-58
Identities = 69/200 (34%), Positives = 122/200 (61%)
Query: 238 RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
R ++ G +L++ D + + +D+ L+ + + + +D+MPG DP++ +LPQQP
Sbjct: 296 RLIILGNSLSNIDNDE--KDMNTIDVFLSSLCSSIHIDLMPGDKDPSDSNLPQQPFPNIF 353
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
F + +N+F+ TNP+ F +DN+ SG+ + ++ YS+ N+++ ++ + R L+
Sbjct: 354 FKKARNFNSFQCVTNPYLFSIDNINICCMSGEPVHNITSYSK-NNKMNALKLIAQSRILS 412
Query: 358 PTAPNTLGCYPFTDRDPFLVE---SCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS 414
PT+P+TLGCYPFT DPF + + PH++ GN K E + ++ ++QL LVC+P F
Sbjct: 413 PTSPDTLGCYPFTKNDPFCLNDDNTYPHIFINGNCSKLEVQYMQDHNKQLPLLVCLPNFH 472
Query: 415 ETGVAVVVNLKNLECHTLSF 434
+ A ++NLKNLE L+F
Sbjct: 473 ISPKAFLINLKNLEYKILTF 492
Score = 183 (69.5 bits), Expect = 2.8e-58, Sum P(3) = 2.8e-58
Identities = 51/167 (30%), Positives = 85/167 (50%)
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E++ +C IGT++K M+L+PSIL+EY E S L N+ H +D L LEDE+ R+K
Sbjct: 145 EIKVNEKCYCIGTIFKKMELRPSILNEYLSEISI--LNNTINYTHDEDILFLEDETARLK 202
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYXXXXX 187
L G + Y+TG+ V + G S G V +++ + + P+ ++P S +DK+
Sbjct: 203 LEG-NINSDFYITGLTVIVKGIGMSNGSLYVEEIIYSYI-PKLDIPNCISNDDKFILFVS 260
Query: 188 XXXXXXXXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI 234
LL + I GD ++ ++ ++I GNS+
Sbjct: 261 GLYINELNKSINNISLLRNFILRLHGDTY---LSENLIRLIILGNSL 304
Score = 77 (32.2 bits), Expect = 2.8e-58, Sum P(3) = 2.8e-58
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 2 EIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALL 51
E + + ++++K Y+ L E F I TY QQ+S IY R+ +M+ LL
Sbjct: 24 EGEHQNKKIKKKHFEYVNLSERFIITCPTYT-QQFSHIYSLRIKIMKTLL 72
>CGD|CAL0003049 [details] [associations]
symbol:HYS2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IEA]
[GO:0006278 "RNA-dependent DNA replication" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 CGD:CAL0003049 GO:GO:0003677
GO:GO:0006260 EMBL:AACQ01000012 GO:GO:0003887 eggNOG:COG1311
KO:K02328 InterPro:IPR024826 PANTHER:PTHR10416 EMBL:AACQ01000011
RefSeq:XP_721869.1 RefSeq:XP_722029.1 STRING:Q5AK60 GeneID:3636359
GeneID:3636441 KEGG:cal:CaO19.11442 KEGG:cal:CaO19.3960
Uniprot:Q5AK60
Length = 474
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 139/389 (35%), Positives = 216/389 (55%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C +IGT++ K K IL++ K ++P +++ D+ ++LEDES
Sbjct: 84 ILDIASGKLCWVIGTVFCDAKYKLDILNDVEKGTDDVLPLEPVTYVNEDEQPIVMLEDES 143
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYX 183
GR L L + VTG +VA+ G E AG F ++D+ APQK LPL +
Sbjct: 144 GRAILNNDNFLAKNLLVTGCIVAVLGIEIQAGIFEIMDIAYPDCAPQKPLPLGENKRGKI 203
Query: 184 XXXXXXXXXXXXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI--------E 235
L+ +LL ++ G LG+ +++ + I ++IAG+SI E
Sbjct: 204 ALVSGLNIGDEGHYDLKLELLKQYLLGELGNAEDKLDGSLISQLIIAGDSIMPIQNLRAE 263
Query: 236 IP-RGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
+ + + N SK+ S+ E K+LD LT I +P+ +MPG NDPA LPQQPL
Sbjct: 264 MDLKNFVTTNNYGSKNISKYNVESFKKLDEFLTDILVSLPVAVMPGKNDPAEICLPQQPL 323
Query: 294 NRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY--SEANDQ---LE 345
+R LF +++ N TNP + V+ LGTSGQ +DD+QKY + + Q +E
Sbjct: 324 HRSLFKNNSSLLDGNRLTRLTNPQWIDAQTVKILGTSGQNVDDIQKYIVPKKDHQFTSIE 383
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV-ESCPHVYFAGNQQKFETRLLKGSDRQL 404
ME ++W++ PTAP+TL CYP+ + DPF+ + PHVYF GNQQ+F+++L + D
Sbjct: 384 IMENNIKWQNFVPTAPDTLYCYPYENYDPFIFSDDLPHVYFVGNQQQFDSKLFE-HDGVN 442
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLS 433
VRL+ IPKF E+G V+++L LE ++
Sbjct: 443 VRLISIPKFKESGQFVLLDLDTLETEVVT 471
>SGD|S000003766 [details] [associations]
symbol:POL31 "Subunit of DNA polymerase delta (polymerase
III)" species:4932 "Saccharomyces cerevisiae" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0006284 "base-excision repair"
evidence=TAS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006301 "postreplication repair" evidence=TAS]
[GO:0043625 "delta DNA polymerase complex" evidence=TAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=TAS] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 SGD:S000003766 EMBL:BK006943 GO:GO:0006284
GO:GO:0003677 GO:GO:0006298 GO:GO:0006278 EMBL:X87611 GO:GO:0006289
GO:GO:0006301 GO:GO:0043137 GO:GO:0003887 GO:GO:0006272
GO:GO:0043625 eggNOG:COG1311 GeneTree:ENSGT00390000006780
HOGENOM:HOG000189057 KO:K02328 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 OrthoDB:EOG4R273H EMBL:D50324 EMBL:Z49506
PIR:S55194 RefSeq:NP_012539.1 ProteinModelPortal:P46957 SMR:P46957
DIP:DIP-2525N IntAct:P46957 MINT:MINT-477144 STRING:P46957
PaxDb:P46957 EnsemblFungi:YJR006W GeneID:853462 KEGG:sce:YJR006W
CYGD:YJR006w NextBio:974044 Genevestigator:P46957
GermOnline:YJR006W Uniprot:P46957
Length = 487
Score = 318 (117.0 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 104/348 (29%), Positives = 160/348 (45%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG----EDKYXXX 185
G + + ++TG+VV + G E AG F VLD+ PQ P K
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 186 XXXXXXXXXXXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
L+ ++L + + G + + K I+ I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINN-KIDDISL-IGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS--AT 303
+ S ++ L + E L I + +DIMPG NDP++ SLPQQP ++ LF S +
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESY 327
Query: 304 YN-----TFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS-EANDQLE 345
+N TNP+ F + V L SG+ I+D+ KY +ND E
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGE 375
Score = 239 (89.2 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 38/90 (42%), Positives = 68/90 (75%)
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR 402
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR+++ +
Sbjct: 395 RLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEIGGK 454
Query: 403 QLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 455 N-IKIISVPEFSSTGMIILLDLETLEAETV 483
>POMBASE|SPAC27E2.05 [details] [associations]
symbol:cdc1 "DNA polymerase delta small subunit Cdc1"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=TAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] InterPro:IPR007185 Pfam:PF04042
PomBase:SPAC27E2.05 GO:GO:0005829 EMBL:CU329670 GO:GO:0051301
GO:GO:0007067 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0000723
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0043625
eggNOG:COG1311 HOGENOM:HOG000189057 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 OMA:CATGCCV EMBL:Y12562 EMBL:Y12561 PIR:T38453
RefSeq:NP_594406.1 IntAct:P87324 STRING:P87324
EnsemblFungi:SPAC27E2.05.1 GeneID:2542083 KEGG:spo:SPAC27E2.05
OrthoDB:EOG4R273H NextBio:20803156 Uniprot:P87324
Length = 462
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 113/349 (32%), Positives = 172/349 (49%)
Query: 103 TPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDV 162
+P V P + D LED+ GR+ G+ L + VTG+V+A+ G E G F+V+DV
Sbjct: 103 SPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYDAGVVTGVVLAVLGHEDEQGRFVVVDV 162
Query: 163 LDAGLAPQK---ELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHITGHLGDEKEQG 219
G+ + + +Y +Q LVD + G L
Sbjct: 163 CFPGIFSHSIPMTTDESQAQPEYIAAVSGLGLSNDGIEGIQVHQLVDFLRGTLPHVSSFS 222
Query: 220 IAAEIVHVVIAGN----SIEIPRGLLNGQNLASKDQSRL-FE-------PIKELDILLTQ 267
+ I ++I GN SIEI + K R ++ P +LD L Q
Sbjct: 223 -PSSIKRLIILGNCLAPSIEIADSASASVPIGKKKVKRYGYDTSAYNPNPTFQLDNFLDQ 281
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY--NTFRSCTNPHCFELDNVRFLG 325
+ + + + +MPGP D ++ LPQQPL+ L S + ++ ++ TNP L N L
Sbjct: 282 VCSSIDVTLMPGPYDYSSTILPQQPLHPALLTKSKVWLGSSLQTVTNPTWLSLGNHFVLA 341
Query: 326 TSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYF 385
TSGQ I+DL+KY L+ ME TL W H+ PT+P+TL CYPFTD+D F++E P +Y
Sbjct: 342 TSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPDTLWCYPFTDKDTFVMEEMPDLYL 401
Query: 386 AGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
GNQ KF + + + ++LV +P+F +TGV V++N+ L + F
Sbjct: 402 CGNQPKFGCKTVINEGNR-IQLVSVPEFRKTGVLVLINMHTLNVEIIQF 449
Score = 213 (80.0 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 64/226 (28%), Positives = 105/226 (46%)
Query: 26 IQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRECVIIGTLYK 84
+ ++TY QQY+ IYFARL +R + W + VL+++ +C ++ T Y
Sbjct: 20 LSQQTY-SQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSDEDCWVVATAYM 78
Query: 85 HMKLKPSILDEYSKERS---TT---PLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSA 138
LKP+++++ ++ + TT P V P + D LED+ GR+ G+ L +
Sbjct: 79 TTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYDAG 138
Query: 139 YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK----YXXXXXXXXXXXX 194
VTG+V+A+ G E G F+V+DV G+ +P+ + E + Y
Sbjct: 139 VVTGVVLAVLGHEDEQGRFVVVDVCFPGIFSHS-IPMTTDESQAQPEYIAAVSGLGLSND 197
Query: 195 XXXPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEI 236
+Q LVD + G L + I ++I GN SIEI
Sbjct: 198 GIEGIQVHQLVDFLRGTLPHVSSFS-PSSIKRLIILGNCLAPSIEI 242
>ASPGD|ASPL0000009421 [details] [associations]
symbol:AN10470 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IEA] [GO:0006278
"RNA-dependent DNA replication" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 GO:GO:0003887
HOGENOM:HOG000189057 OMA:HWGSGVG InterPro:IPR024826
PANTHER:PTHR10416 EnsemblFungi:CADANIAT00004848 Uniprot:C8V6H5
Length = 538
Score = 240 (89.5 bits), Expect = 9.9e-41, Sum P(3) = 9.9e-41
Identities = 69/232 (29%), Positives = 119/232 (51%)
Query: 27 QKETYRGQQYSQIYFARLHLMRALLYSL-VPNWK------PHLP-ICTVLELEEGRECVI 78
Q+ Y+ QQY +YF RL ++ + ++ V W+ H + VL++ +G C +
Sbjct: 41 QERQYQ-QQYGDMYFLRLAKLKPAVEAVAVEAWEGFSIAGEHARRVERVLDVRQGELCWV 99
Query: 79 IGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM---HPD-DHLVLEDESGRVKLGGAEL 134
GT+Y M LKP+ILD+ +K+ T+ + HP+ ++LEDESGR++L G++L
Sbjct: 100 AGTIYMEMPLKPNILDDLAKDNFTSAPPPRRTYQDPAHPELTEIMLEDESGRLRLTGSKL 159
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLA--PQK------ELPLNSGEDKYXXXX 186
TG+++A+ G E + G+F +D+ LA P++ + P + + K
Sbjct: 160 QSVQLATGVIIAVLGTENANGDFEAIDIKVPDLARQPRRWERDEAKAPKEAKKGKIAMVS 219
Query: 187 XXXXXXXXXXXPLQFQLLVDHITGHLGDEK-EQGI---AAEIVHVVIAGNSI 234
L +LL D++ G+ G K E+G A+ I ++IAGNS+
Sbjct: 220 GLGITGTSSDT-LALELLTDYLLGYTGSSKGEEGSPPDASRITRLIIAGNSL 270
Score = 224 (83.9 bits), Expect = 9.9e-41, Sum P(3) = 9.9e-41
Identities = 46/106 (43%), Positives = 66/106 (62%)
Query: 307 FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ-------------LEFMERTLRW 353
F S TNP +++ RF G+SGQ +DD+ +Y + D+ + ME LRW
Sbjct: 369 FDSVTNPWEGDVEGWRFWGSSGQNVDDVLRYLDFADEDGNVDMNGDTEARIRVMEAMLRW 428
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
R PTAP+TL YPF DPF++ESCPH++FAGNQ +F+T +++G
Sbjct: 429 RCGVPTAPDTLWSYPFQTHDPFVMESCPHLFFAGNQPQFKTAVIEG 474
Score = 198 (74.8 bits), Expect = 5.0e-38, Sum P(3) = 5.0e-38
Identities = 54/157 (34%), Positives = 81/157 (51%)
Query: 213 GDEKEQGIAAEIVHVVIAGNS-----IE-------IPRGLLNGQNLASKDQSRL-FEPIK 259
G+E A+ I ++IAGNS IE +P + Q D S PI
Sbjct: 249 GEEGSPPDASRITRLIIAGNSLGASTIEAAPATDGVPAKKIAHQKKYGYDASAYNASPIT 308
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT------------- 306
+LD L ++ +P+ +MPG +DPANF+LPQQP++R +FP S Y +
Sbjct: 309 QLDSFLAELLPSIPITLMPGESDPANFALPQQPIHRAMFPRSRAYCSAPPIGEDKVEPGW 368
Query: 307 FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ 343
F S TNP +++ RF G+SGQ +DD+ +Y + D+
Sbjct: 369 FDSVTNPWEGDVEGWRFWGSSGQNVDDVLRYLDFADE 405
Score = 75 (31.5 bits), Expect = 9.9e-41, Sum P(3) = 9.9e-41
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
VRL+ +PKF ETG V+V+ + L + FGT
Sbjct: 499 VRLISLPKFRETGELVLVDTETLGVEVVRFGT 530
>UNIPROTKB|C9JHC7 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 HOGENOM:HOG000189057
InterPro:IPR024826 PANTHER:PTHR10416 HGNC:HGNC:9176 ChiTaRS:POLD2
EMBL:AC006454 IPI:IPI00926735 ProteinModelPortal:C9JHC7 SMR:C9JHC7
STRING:C9JHC7 Ensembl:ENST00000436844 ArrayExpress:C9JHC7
Bgee:C9JHC7 Uniprot:C9JHC7
Length = 257
Score = 306 (112.8 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 75/186 (40%), Positives = 105/186 (56%)
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYXXXXXXXXXXXXXXXPLQ 200
G V+A+ G G+FLV D A LAPQK P L++ D++ L
Sbjct: 74 GTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDT--DRFVLLVSGLGLGGGGGESLL 131
Query: 201 -FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP---RGLLN-GQNLASKDQSRLF 255
QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K Q+
Sbjct: 132 GTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASV 191
Query: 256 EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHC 315
E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T + TNP+
Sbjct: 192 EAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQ 251
Query: 316 FELDNV 321
+D V
Sbjct: 252 ATIDGV 257
Score = 61 (26.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALL 51
ATY +PF + + ++ +QY+ IY RL MR L
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFL 65
>UNIPROTKB|C9JLE1 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] GO:GO:0005634 GO:GO:0006261
HOGENOM:HOG000189057 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00927870
ProteinModelPortal:C9JLE1 SMR:C9JLE1 STRING:C9JLE1
Ensembl:ENST00000433715 ArrayExpress:C9JLE1 Bgee:C9JLE1
Uniprot:C9JLE1
Length = 220
Score = 276 (102.2 bits), Expect = 6.1e-24, P = 6.1e-24
Identities = 65/161 (40%), Positives = 92/161 (57%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP 174
+ S VTG V+A+ G G+FLV D A LAPQK P
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAP 188
>WB|WBGene00008722 [details] [associations]
symbol:F12F6.7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0040035 GO:GO:0003887 eggNOG:COG1311
GeneTree:ENSGT00390000006780 KO:K02328 InterPro:IPR024826
PANTHER:PTHR10416 EMBL:Z73425 PIR:T20798 RefSeq:NP_502177.1
ProteinModelPortal:Q19366 IntAct:Q19366 STRING:Q19366 PaxDb:Q19366
EnsemblMetazoa:F12F6.7.1 EnsemblMetazoa:F12F6.7.2 GeneID:178077
KEGG:cel:CELE_F12F6.7 UCSC:F12F6.7.1 CTD:178077 WormBase:F12F6.7
HOGENOM:HOG000017939 InParanoid:Q19366 OMA:CATGCCV NextBio:899618
Uniprot:Q19366
Length = 451
Score = 288 (106.4 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 94/393 (23%), Positives = 175/393 (44%)
Query: 69 ELEEGRECVIIGTLYKHMKLKPSIL-----------DEYSKERSTTPLVKPHNFMHPDDH 117
+ ++ E ++G + K + +PSIL D+Y ++ + + + +D
Sbjct: 68 DAKQDEEIFVVGVIVKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSI--EDR 125
Query: 118 LVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS 177
+ LE + V+L G + TG V + GK G F V ++ + K++ ++
Sbjct: 126 IELESDKQTVRLEG-NISMDECATGCCVGVLGKLGKEGVFHVNRLVWPSVKVPKKVAVD- 183
Query: 178 GEDKYXXXXXXXXXXXXXXXPLQ-FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
G + + + + D + +G+E + I +V+ G +E
Sbjct: 184 GTIAFVSGLDLTGDLEDDRLTISGLEFMADWMNVQVGNENQ---CPPIDRLVVIGPLVET 240
Query: 237 P------RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPL----DIMPGPNDPANF 286
+ ++ L+ ++ + +D ++ IA PL D+ PG DP +
Sbjct: 241 KSNGCDVQSVVRTLTLSRAEKHSSTASLITVDKIINSIAEK-PLVNTVDVTPGVGDPCSS 299
Query: 287 SLPQQPLNR-CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE 345
P P++R CL + TNP+ FE++ +R + SG+ + +L + S +
Sbjct: 300 MWPLPPIHRVCLPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGAD 359
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLV 405
+E ++W+H+AP P+TL +P +RDP +++ PHV GNQ E R + D
Sbjct: 360 AIENIIKWQHVAPNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIP-IDGSNC 418
Query: 406 RLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
+VC+PKFS+T VA +NL +L +F QF
Sbjct: 419 LVVCLPKFSKTRVACFLNLSDLSLKWQNFDHQF 451
>UNIPROTKB|C9IZD2 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] GO:GO:0006261 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 IPI:IPI00927214
ProteinModelPortal:C9IZD2 SMR:C9IZD2 STRING:C9IZD2
Ensembl:ENST00000418438 HOGENOM:HOG000213747 ArrayExpress:C9IZD2
Bgee:C9IZD2 Uniprot:C9IZD2
Length = 148
Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG 131
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKG 146
>UNIPROTKB|C9J8Z7 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] GO:GO:0006261 InterPro:IPR024826 PANTHER:PTHR10416
HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454 HOGENOM:HOG000213747
IPI:IPI00927382 ProteinModelPortal:C9J8Z7 SMR:C9J8Z7 STRING:C9J8Z7
Ensembl:ENST00000456038 ArrayExpress:C9J8Z7 Bgee:C9J8Z7
Uniprot:C9J8Z7
Length = 155
Score = 211 (79.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG 131
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKG 146
>UNIPROTKB|H7C1B3 [details] [associations]
symbol:POLD2 "DNA polymerase delta subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 InterPro:IPR024826
PANTHER:PTHR10416 HGNC:HGNC:9176 ChiTaRS:POLD2 EMBL:AC006454
ProteinModelPortal:H7C1B3 Ensembl:ENST00000436400 Bgee:H7C1B3
Uniprot:H7C1B3
Length = 83
Score = 149 (57.5 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 291 QPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE 345
QPL+ C+FP + Y+T + TNP+ +D VRFLGTSGQ + D+ +YS D LE
Sbjct: 28 QPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLE 82
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 439 424 0.00084 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 613 (65 KB)
Total size of DFA: 262 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.86u 0.13s 32.99t Elapsed: 00:00:02
Total cpu time: 32.87u 0.13s 33.00t Elapsed: 00:00:02
Start: Sat May 11 09:12:09 2013 End: Sat May 11 09:12:11 2013