BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013632
(439 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225441449|ref|XP_002279533.1| PREDICTED: DNA polymerase delta small subunit [Vitis vinifera]
gi|297739835|emb|CBI30017.3| unnamed protein product [Vitis vinifera]
Length = 439
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/439 (83%), Positives = 400/439 (91%), Gaps = 1/439 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
MEID E+ LQRKQ+ Y LDE F I+KETYRGQQYSQIYFARLH+MR L+YSL+PNWKP
Sbjct: 1 MEIDAEK-HLQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKP 59
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
HLP+CTVL LEEG+EC+I+GTLYKHMKLKP ILDEYSKERS PLVKPHNFMH DD LVL
Sbjct: 60 HLPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVL 119
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKLGG LLPS YVTG VV LHGKETSAGEFLV D+LDA L PQ ELPL S ED
Sbjct: 120 EDESGRVKLGGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSRED 179
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYVV VSGL+VGS TSNPLQFQLLVDHITGHLGDEKEQGIAA+IVHVVIAGNS+ +PRGL
Sbjct: 180 KYVVFVSGLSVGSSTSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGL 239
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
LNGQNLASKDQSRL EPIKELDILLTQIAAG+PLDIMPGP+DPANFSLPQQPL+RCLFPG
Sbjct: 240 LNGQNLASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPG 299
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
S+ YN+FRSCTNPH FEL+N+RFLGTSGQ +DDL+KYSEA D+LEFMERTLRWRHLAPTA
Sbjct: 300 SSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTA 359
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
PNTLGCYPFTDRDPFL+ESCPHVYF GNQ K+ETRL+KGS+ Q+VRL+CIPKF ETGVAV
Sbjct: 360 PNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAV 419
Query: 421 VVNLKNLECHTLSFGTQFS 439
V+N++NLECH LSFGT+FS
Sbjct: 420 VLNMRNLECHALSFGTEFS 438
>gi|147776498|emb|CAN71889.1| hypothetical protein VITISV_040861 [Vitis vinifera]
Length = 439
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/439 (82%), Positives = 399/439 (90%), Gaps = 1/439 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
MEID E+ LQRKQ+ Y LDE F I+KETYRGQQYSQIYFARLH+MR L+YSL+PNWKP
Sbjct: 1 MEIDAEK-HLQRKQSLYESLDEKFRIEKETYRGQQYSQIYFARLHMMRTLIYSLIPNWKP 59
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
HLP+CTVL LEEG+EC+I+GTLYKHMKLKP ILDEYSKERS PLVKPHNFMH DD LVL
Sbjct: 60 HLPVCTVLGLEEGKECIIVGTLYKHMKLKPCILDEYSKERSVAPLVKPHNFMHSDDSLVL 119
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKLGG LLPS YVTG VV LHGKETSAGEFLV D+LDA L PQ ELPL S ED
Sbjct: 120 EDESGRVKLGGTMLLPSVYVTGTVVGLHGKETSAGEFLVQDILDADLPPQIELPLKSRED 179
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYVV VSGL+VGS SNPLQFQLLVDHITGHLGDEKEQGIAA+IVHVVIAGNS+ +PRGL
Sbjct: 180 KYVVFVSGLSVGSSXSNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVIAGNSVAVPRGL 239
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
LNGQNLASKDQSRL EPIKELDILLTQIAAG+PLDIMPGP+DPANFSLPQQPL+RCLFPG
Sbjct: 240 LNGQNLASKDQSRLSEPIKELDILLTQIAAGLPLDIMPGPDDPANFSLPQQPLHRCLFPG 299
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
S+ YN+FRSCTNPH FEL+N+RFLGTSGQ +DDL+KYSEA D+LEFMERTLRWRHLAPTA
Sbjct: 300 SSAYNSFRSCTNPHSFELENIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTA 359
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
PNTLGCYPFTDRDPFL+ESCPHVYF GNQ K+ETRL+KGS+ Q+VRL+CIPKF ETGVAV
Sbjct: 360 PNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYETRLIKGSEGQVVRLICIPKFCETGVAV 419
Query: 421 VVNLKNLECHTLSFGTQFS 439
V+N++NLECH LSFGT+FS
Sbjct: 420 VLNMRNLECHALSFGTEFS 438
>gi|224139798|ref|XP_002323281.1| predicted protein [Populus trichocarpa]
gi|222867911|gb|EEF05042.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/453 (79%), Positives = 390/453 (86%), Gaps = 15/453 (3%)
Query: 1 MEIDGEEARLQRKQATY----------IFLDEPFEIQKETYRGQQYSQIYFARLHLMRAL 50
MEID E+ LQRKQ+TY I DE FEIQ ETYRGQQYSQIYFARLH MR L
Sbjct: 1 MEIDTEK-NLQRKQSTYQSLVTISLLLILQDETFEIQNETYRGQQYSQIYFARLHTMRTL 59
Query: 51 LYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE--RSTTPLVKP 108
LYSLV +WKPH+P+CTVLELEEG+EC+I+GTLYKHMKLKP ILDEYSKE RS PLVKP
Sbjct: 60 LYSLVTHWKPHVPVCTVLELEEGKECIIVGTLYKHMKLKPCILDEYSKEACRSALPLVKP 119
Query: 109 HNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLA 168
HNFMHPDDHLVLEDESGRVKLGG L PS YVTG+VVALHGKET AG+F+VLDVL+AGLA
Sbjct: 120 HNFMHPDDHLVLEDESGRVKLGGTVLSPSVYVTGVVVALHGKETGAGDFMVLDVLEAGLA 179
Query: 169 PQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
PQ E L S EDKYVV +SG+N GS SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV
Sbjct: 180 PQIEPQLKSREDKYVVFISGVNAGSSLSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 239
Query: 229 IAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANF 286
IAGNS+EIP GLLNGQ NLASKDQSRL EP++ELDILLTQIAAGVP+DIMPG NDPANF
Sbjct: 240 IAGNSVEIPLGLLNGQVRNLASKDQSRLSEPVQELDILLTQIAAGVPVDIMPGSNDPANF 299
Query: 287 SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEF 346
LPQQPLNR LFPGS YNTFRSCTNPHCFEL VR LGTSGQ IDDL+KYSE D+LEF
Sbjct: 300 CLPQQPLNRWLFPGSRAYNTFRSCTNPHCFELAGVRILGTSGQNIDDLKKYSEGKDELEF 359
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVR 406
MERTL+WRHLAPT PNTLGCYPFTDRDPFL+ESCPHVYF GNQ K+ TR+LKGS+ QLVR
Sbjct: 360 MERTLKWRHLAPTTPNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYGTRILKGSEGQLVR 419
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS 439
L+ IPKF TG+ VV+NL+NLECHTLSFGTQFS
Sbjct: 420 LISIPKFCNTGMVVVLNLRNLECHTLSFGTQFS 452
>gi|255579737|ref|XP_002530707.1| DNA polymerase delta small subunit, putative [Ricinus communis]
gi|223529721|gb|EEF31661.1| DNA polymerase delta small subunit, putative [Ricinus communis]
Length = 425
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/421 (82%), Positives = 377/421 (89%), Gaps = 1/421 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
MEID E++ L RKQ TY LDE +EIQ ETYRGQQYSQIYFARLH++R LLYSLVP WK
Sbjct: 1 MEIDNEKS-LHRKQCTYASLDETYEIQNETYRGQQYSQIYFARLHMIRTLLYSLVPLWKS 59
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
HLP+CTVL L EG+EC+I+GTLYKHMKLKP ILDEYSKERS PLVKPHNFMH DDHLVL
Sbjct: 60 HLPVCTVLGLVEGKECIIVGTLYKHMKLKPCILDEYSKERSAIPLVKPHNFMHLDDHLVL 119
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKLGG L PSAYVTG+VVALHGKET AG+F+VLDVL+AGL PQ ELPL S ED
Sbjct: 120 EDESGRVKLGGDMLTPSAYVTGLVVALHGKETGAGDFMVLDVLEAGLPPQIELPLQSRED 179
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYVV VSGLNVGS T NPLQFQLLVDHITGHLG+EKEQ IAAEIVHVVIAGNS+EIP GL
Sbjct: 180 KYVVFVSGLNVGSSTFNPLQFQLLVDHITGHLGNEKEQAIAAEIVHVVIAGNSVEIPHGL 239
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
LNGQNLASKDQSRL EP+KELDI L+QIAA +P+DIMPG NDPANFSLPQQPL+RCLFPG
Sbjct: 240 LNGQNLASKDQSRLSEPVKELDIFLSQIAASMPMDIMPGSNDPANFSLPQQPLHRCLFPG 299
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
SA YNTFRSCTNPHCFELDN+RFLGTSGQ IDDL+KYSEA D+LEFMERTL+WRHLAPTA
Sbjct: 300 SAAYNTFRSCTNPHCFELDNIRFLGTSGQNIDDLEKYSEAKDKLEFMERTLKWRHLAPTA 359
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
PNTLGCYPFTDRDPFL+ESCPHVYF GNQ K+ TRLLKGS+ QL RL+ IPKF ETGVAV
Sbjct: 360 PNTLGCYPFTDRDPFLIESCPHVYFVGNQDKYGTRLLKGSEGQLSRLISIPKFCETGVAV 419
Query: 421 V 421
V
Sbjct: 420 V 420
>gi|42571181|ref|NP_973664.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
gi|322510023|sp|O48520.2|DPOD2_ARATH RecName: Full=DNA polymerase delta small subunit
gi|22531160|gb|AAM97084.1| putative DNA polymerase delta small subunit [Arabidopsis thaliana]
gi|31376377|gb|AAP49515.1| At2g42120 [Arabidopsis thaliana]
gi|62320658|dbj|BAD95325.1| DNA polymerase delta small subunit like protein [Arabidopsis
thaliana]
gi|330254978|gb|AEC10072.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
Length = 440
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/439 (77%), Positives = 389/439 (88%), Gaps = 1/439 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
MEID E+ +RKQ+ Y LDE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK
Sbjct: 1 MEIDSEKIH-ERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKS 59
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+L
Sbjct: 60 HLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLIL 119
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++ ED
Sbjct: 120 EDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQED 179
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYVVL+SGL +GS ++NPLQFQLLVDHITGHLGDE+EQG+AA+IVHVVIAGNS E PR L
Sbjct: 180 KYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKL 239
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
+NGQNLASKDQS L+EPIKELDI+L+QIAAGV +DIMPG NDPANF+LPQQPLNRCLFPG
Sbjct: 240 INGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPG 299
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
S+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA +L+F+ERTLRWRHLAPTA
Sbjct: 300 SSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTA 359
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
PNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+AV
Sbjct: 360 PNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAV 419
Query: 421 VVNLKNLECHTLSFGTQFS 439
VNL+NLECHTLSF TQ +
Sbjct: 420 AVNLRNLECHTLSFSTQIN 438
>gi|42569857|ref|NP_181742.2| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
gi|330254979|gb|AEC10073.1| DNA polymerase delta subunit 2 [Arabidopsis thaliana]
Length = 441
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/440 (77%), Positives = 389/440 (88%), Gaps = 2/440 (0%)
Query: 1 MEIDGEEARLQRKQATYIFL-DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWK 59
MEID E+ +RKQ+ Y L DE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK
Sbjct: 1 MEIDSEKIH-ERKQSDYNSLQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWK 59
Query: 60 PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLV 119
HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+
Sbjct: 60 SHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLI 119
Query: 120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE 179
LEDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++ E
Sbjct: 120 LEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQE 179
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
DKYVVL+SGL +GS ++NPLQFQLLVDHITGHLGDE+EQG+AA+IVHVVIAGNS E PR
Sbjct: 180 DKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRK 239
Query: 240 LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
L+NGQNLASKDQS L+EPIKELDI+L+QIAAGV +DIMPG NDPANF+LPQQPLNRCLFP
Sbjct: 240 LINGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFP 299
Query: 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPT 359
GS+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA +L+F+ERTLRWRHLAPT
Sbjct: 300 GSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPT 359
Query: 360 APNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVA 419
APNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+A
Sbjct: 360 APNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIA 419
Query: 420 VVVNLKNLECHTLSFGTQFS 439
V VNL+NLECHTLSF TQ +
Sbjct: 420 VAVNLRNLECHTLSFSTQIN 439
>gi|449437575|ref|XP_004136567.1| PREDICTED: DNA polymerase delta small subunit-like [Cucumis
sativus]
gi|449526900|ref|XP_004170451.1| PREDICTED: DNA polymerase delta small subunit-like [Cucumis
sativus]
Length = 438
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/439 (78%), Positives = 394/439 (89%), Gaps = 1/439 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
MEID + RKQ TY DE ++IQKETY+GQQYS IYFARLHLMR +L+SLV NWKP
Sbjct: 1 MEIDSL-TNVHRKQCTYELSDEQYKIQKETYKGQQYSHIYFARLHLMRTILHSLVSNWKP 59
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
HLP+ TVL LEEG+ECVI+GT+YKHMKLKP+ILDEYSKERS PLVKPHNFMHPDDHLVL
Sbjct: 60 HLPVSTVLGLEEGKECVIVGTVYKHMKLKPTILDEYSKERSAIPLVKPHNFMHPDDHLVL 119
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKL G LLPS YVTGIV+ALHGKETS G+FLVLD+L+A L PQ E PL S ED
Sbjct: 120 EDESGRVKLSGDVLLPSVYVTGIVLALHGKETSVGDFLVLDILEADLPPQIERPLISSED 179
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYV+ VSGL++GS SNPLQFQLLVDHITGHLGDEKEQGIAA+IVHVVI GNS+EIPRG+
Sbjct: 180 KYVIFVSGLSIGSSISNPLQFQLLVDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRGI 239
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
LNGQ+L++KDQ++L EP+KELDILL Q+AAG+P+DIMPG +DPANFSLPQQPL+RCLFPG
Sbjct: 240 LNGQHLSAKDQTKLTEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPG 299
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
S+ YNTFRSCTNPHCFELDN RFLGTSGQ +DDL+KYSEA D+LEFMERTLRWRHLAPTA
Sbjct: 300 SSAYNTFRSCTNPHCFELDNFRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTA 359
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
PNTLGCYPFTDRDPFL+ESCPHVYF GNQ+KF+TRL+KG++ Q+VRL+ IP+F ETG+AV
Sbjct: 360 PNTLGCYPFTDRDPFLIESCPHVYFIGNQEKFDTRLMKGAEGQMVRLIAIPRFCETGIAV 419
Query: 421 VVNLKNLECHTLSFGTQFS 439
++NL+NLECHTLS GT+FS
Sbjct: 420 MLNLRNLECHTLSLGTEFS 438
>gi|297827879|ref|XP_002881822.1| hypothetical protein ARALYDRAFT_483299 [Arabidopsis lyrata subsp.
lyrata]
gi|297327661|gb|EFH58081.1| hypothetical protein ARALYDRAFT_483299 [Arabidopsis lyrata subsp.
lyrata]
Length = 441
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/440 (77%), Positives = 388/440 (88%), Gaps = 2/440 (0%)
Query: 1 MEIDGEEARLQRKQATYIFL-DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWK 59
MEID E+ +RK + Y L DE FEIQKE YRGQQYSQIYF RLHLMR LLYSL P WK
Sbjct: 1 MEIDSEKIH-ERKHSDYNSLQDERFEIQKEMYRGQQYSQIYFVRLHLMRTLLYSLAPTWK 59
Query: 60 PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLV 119
PHLP+C VL LE+G+ECVI+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+
Sbjct: 60 PHLPVCKVLGLEKGKECVIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLI 119
Query: 120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE 179
LEDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++ +
Sbjct: 120 LEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQD 179
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
DKYVVL+SGL +GS ++ PLQFQLLVDHITGHLGDE+EQG+AA+IVHVVIAGNS+E PR
Sbjct: 180 DKYVVLLSGLCIGSKSAIPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSVEFPRK 239
Query: 240 LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
L+NGQNLASKDQS L+EPIKELDI+L QIAAGV +DIMPG NDPANF+LPQQPLNRCLFP
Sbjct: 240 LINGQNLASKDQSTLYEPIKELDIMLNQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFP 299
Query: 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPT 359
GS+ YNTFRSCTNPH F+LDN+RFLGTSGQ IDDL KYSEA +L+F+ERTLRWRHLAPT
Sbjct: 300 GSSPYNTFRSCTNPHSFDLDNIRFLGTSGQNIDDLDKYSEAKSKLDFVERTLRWRHLAPT 359
Query: 360 APNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVA 419
APNTLGCYPFTDRDPFL+E+CPHVYF GNQ+K++ RLLKGS+ QLVRL+CIPKF ETG+A
Sbjct: 360 APNTLGCYPFTDRDPFLIETCPHVYFVGNQEKYDNRLLKGSEGQLVRLICIPKFCETGIA 419
Query: 420 VVVNLKNLECHTLSFGTQFS 439
V VNL+NL+CHTLSF TQ +
Sbjct: 420 VAVNLRNLDCHTLSFSTQIN 439
>gi|224091621|ref|XP_002309305.1| predicted protein [Populus trichocarpa]
gi|222855281|gb|EEE92828.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/439 (80%), Positives = 391/439 (89%), Gaps = 1/439 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
MEID E+ +QRK++TY LDE F+IQ ETYRGQQYSQIYFARLHLMR LLYSLV +WKP
Sbjct: 4 MEIDIEK-NIQRKRSTYQSLDETFDIQNETYRGQQYSQIYFARLHLMRTLLYSLVTHWKP 62
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
H+P+CTVL LEEG+EC+I+GTLYKHMKLKP +LDEYSKERS PLVKPHNFMHPDDHLVL
Sbjct: 63 HVPVCTVLGLEEGKECIIVGTLYKHMKLKPCVLDEYSKERSAVPLVKPHNFMHPDDHLVL 122
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKLGG L PS YVTG VVALHGKET+AG+FLVLDV +AGLAPQ E L S ED
Sbjct: 123 EDESGRVKLGGTVLSPSKYVTGGVVALHGKETTAGDFLVLDVFEAGLAPQIEPQLKSRED 182
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYVV VSG++VGS TSNPLQFQLLVDHITGHLGD++EQGIAAEIVHVV AGNS+EIP GL
Sbjct: 183 KYVVFVSGVSVGSSTSNPLQFQLLVDHITGHLGDDQEQGIAAEIVHVVFAGNSVEIPSGL 242
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
LNGQNLASKDQSRL EP++ELDI LTQIAAGV +DIMPG NDPANF+LPQQPLNRCLFPG
Sbjct: 243 LNGQNLASKDQSRLSEPVQELDIWLTQIAAGVSVDIMPGSNDPANFALPQQPLNRCLFPG 302
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
S YNTF CTNPHCFELD VRFLGTSGQ IDDL+KYSEA D+LEFMERTL+WRHLAPTA
Sbjct: 303 SRAYNTFNLCTNPHCFELDGVRFLGTSGQNIDDLKKYSEARDELEFMERTLKWRHLAPTA 362
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
PNTLGCYPFTD+DPFL+ESCPHVYF GNQ K+ T +L GS+ QLVRL+ +PKF +TG+AV
Sbjct: 363 PNTLGCYPFTDKDPFLIESCPHVYFVGNQDKYGTHILNGSEGQLVRLISVPKFCDTGIAV 422
Query: 421 VVNLKNLECHTLSFGTQFS 439
V+NL+NLECHTLSFG QFS
Sbjct: 423 VLNLRNLECHTLSFGAQFS 441
>gi|2673906|gb|AAB88640.1| putative DNA polymerase delta small subunit [Arabidopsis thaliana]
Length = 456
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/455 (74%), Positives = 389/455 (85%), Gaps = 17/455 (3%)
Query: 1 MEIDGEEARLQRKQATY-----------IFLDEPFEIQKETYRGQQYSQIYFARLHLMRA 49
MEID E+ +RKQ+ Y + DE FEIQKE YRGQQYSQIYFARLHLMR
Sbjct: 1 MEIDSEKIH-ERKQSDYNSLVRTLLLYRLVQDERFEIQKEMYRGQQYSQIYFARLHLMRT 59
Query: 50 LLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPH 109
LLYSL P WK HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPH
Sbjct: 60 LLYSLAPTWKSHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPH 119
Query: 110 NFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
NFMHPDD+L+LEDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL P
Sbjct: 120 NFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPP 179
Query: 170 QKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
Q E P++ EDKYVVL+SGL +GS ++NPLQFQLLVDHITGHLGDE+EQG+AA+IVHVVI
Sbjct: 180 QIERPIDLQEDKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVI 239
Query: 230 AGNSIEIPRGLLNGQ-----NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284
AGNS E PR L+NGQ NLASKDQS L+EPIKELDI+L+QIAAGV +DIMPG NDPA
Sbjct: 240 AGNSFEFPRKLINGQVLITFNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPA 299
Query: 285 NFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQL 344
NF+LPQQPLNRCLFPGS+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA +L
Sbjct: 300 NFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKL 359
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL 404
+F+ERTLRWRHLAPTAPNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QL
Sbjct: 360 DFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQL 419
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS 439
VRL+CIPKF ETG+AV VNL+NLECHTLSF TQ +
Sbjct: 420 VRLICIPKFCETGIAVAVNLRNLECHTLSFSTQIN 454
>gi|356504864|ref|XP_003521214.1| PREDICTED: DNA polymerase delta small subunit-like [Glycine max]
Length = 433
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/430 (80%), Positives = 387/430 (90%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++R Q Y LDE FEI KE Y+GQQYSQIYFARLHLMR LLYSLVP+WKP+ P+CTVL
Sbjct: 3 MERVQCAYASLDEAFEIGKEAYQGQQYSQIYFARLHLMRTLLYSLVPHWKPNFPVCTVLG 62
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG+ECVI+GTLYKHMKLKP ILDEYSKERS PLVKPHNF+HPDDHLVLEDESGRVKL
Sbjct: 63 LEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESGRVKL 122
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
G+ +LPS YVTGIVVAL GKET AG+FLV DVLDAGL PQ E PL EDKYVVLVSGL
Sbjct: 123 SGSIILPSEYVTGIVVALLGKETGAGDFLVQDVLDAGLPPQIEFPLKPREDKYVVLVSGL 182
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
+VGS +SNPLQFQLL+DHITGHLGDEKEQ IA++IV VV AGN +EIPR LLNGQNLASK
Sbjct: 183 SVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVVFAGNLVEIPRRLLNGQNLASK 242
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
D SR+ EPIKELDILL+QIAAG+PLDIMPGP+DPANFSLPQQ L+RCLFPGS+ YNTFRS
Sbjct: 243 DLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSAYNTFRS 302
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
CTNPHCFE+DNVRFLGTSGQ +DDL+KYSEA D+LEFMERTLRWRHLAPTAPNTLGCYP+
Sbjct: 303 CTNPHCFEVDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPY 362
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPF +ESCPHVYF GNQ KFETR++KGS+ QLVRL+C+PKFSETGVAV++NL++L+C
Sbjct: 363 TDKDPFFIESCPHVYFVGNQDKFETRVIKGSEGQLVRLICVPKFSETGVAVMLNLRDLDC 422
Query: 430 HTLSFGTQFS 439
H LSFGTQFS
Sbjct: 423 HALSFGTQFS 432
>gi|357509943|ref|XP_003625260.1| DNA polymerase delta small subunit [Medicago truncatula]
gi|355500275|gb|AES81478.1| DNA polymerase delta small subunit [Medicago truncatula]
Length = 454
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/427 (77%), Positives = 381/427 (89%), Gaps = 2/427 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
+R Q +Y LDE FEI KE YRGQQYSQIYFARLHLMR LLYSLVP+WKP+ P+CTVL
Sbjct: 5 FKRMQCSYESLDESFEIGKEMYRGQQYSQIYFARLHLMRTLLYSLVPHWKPNTPVCTVLG 64
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG+ECVI+GTL+K+MKLKP ILDEYSK+RS VK HNF+H DD+LVLEDESGRVKL
Sbjct: 65 LEEGKECVIVGTLFKNMKLKPCILDEYSKQRSVP--VKSHNFVHEDDYLVLEDESGRVKL 122
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GG+ ++PS YVTGIVVALHGKET AG+FLV +VL+AGL PQ E P+ S EDKYVVLVSGL
Sbjct: 123 GGSIIVPSVYVTGIVVALHGKETGAGDFLVQEVLEAGLPPQIEFPIKSREDKYVVLVSGL 182
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
+VGS SNPLQFQLLVDHITGHLGDEKEQ IAA+IV VVIAGNS+E+PRGLLNGQNL SK
Sbjct: 183 SVGSSKSNPLQFQLLVDHITGHLGDEKEQSIAAQIVRVVIAGNSVEMPRGLLNGQNLVSK 242
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
D S++ EP+KELDI+L QIAAG+PLDIMPGP DPANFSLPQQ L++CLFPGS+ YNTF+S
Sbjct: 243 DLSKMAEPVKELDIMLNQIAAGLPLDIMPGPCDPANFSLPQQALHKCLFPGSSVYNTFKS 302
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
CTNPHCFELD +RFLGTSGQ +DDL+KYSEA D+L+FMERTLRWRHLAPTAPNTLGCYP+
Sbjct: 303 CTNPHCFELDGIRFLGTSGQNVDDLEKYSEAKDKLDFMERTLRWRHLAPTAPNTLGCYPY 362
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TDRDPF +ESCPHVYF GNQ K++TR++KGS+ QLVRLVC+PKFSETGVAV++NL++LEC
Sbjct: 363 TDRDPFFIESCPHVYFVGNQDKYDTRVIKGSEGQLVRLVCVPKFSETGVAVMLNLRDLEC 422
Query: 430 HTLSFGT 436
H LSFGT
Sbjct: 423 HALSFGT 429
>gi|356572096|ref|XP_003554206.1| PREDICTED: DNA polymerase delta small subunit-like [Glycine max]
Length = 433
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/430 (80%), Positives = 385/430 (89%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++R Q Y LDE FEI KETY+GQQYSQIYFARLHLMR LLYSL+P+WKP+ P+CTVL
Sbjct: 3 MERVQCAYASLDEAFEIGKETYQGQQYSQIYFARLHLMRTLLYSLIPHWKPNSPVCTVLG 62
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG+ECVI+GTLYKHMKLKP ILDEYSKERS PLVKPHNF+HPDDHLVLEDESGRVKL
Sbjct: 63 LEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESGRVKL 122
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
G + PS YVTGIVVAL GKET AG+FLV DVL AGL PQ E PL S EDKYVVLVSGL
Sbjct: 123 SGYIISPSEYVTGIVVALLGKETGAGDFLVQDVLQAGLPPQIEFPLKSREDKYVVLVSGL 182
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
+VGS +SNPLQFQLL+DHITGHLGDEKEQ IA++I VV AGN IEIP LLNGQNLASK
Sbjct: 183 SVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIAQVVFAGNLIEIPHRLLNGQNLASK 242
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
D SR+ EPIKELDILL+QIAAG+PLDIMPGP+DPANFSLPQQ L+RCLFPGS+TYNTFRS
Sbjct: 243 DLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSTYNTFRS 302
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
CTNPHCFELDNVRFLGTSGQ +DDL+KYSEA D+LEFMERTLRWRHLAPTAPNTLGCYP+
Sbjct: 303 CTNPHCFELDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPY 362
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPF +ESCPHVYF GNQ KFETR++KGS+ QLVRLVC+PKFSETGVAV++NL++L+C
Sbjct: 363 TDKDPFFIESCPHVYFIGNQDKFETRVIKGSEGQLVRLVCVPKFSETGVAVMLNLRDLDC 422
Query: 430 HTLSFGTQFS 439
+ LSFGTQFS
Sbjct: 423 YALSFGTQFS 432
>gi|218192011|gb|EEC74438.1| hypothetical protein OsI_09828 [Oryza sativa Indica Group]
Length = 429
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/429 (72%), Positives = 369/429 (86%), Gaps = 2/429 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKPHLP+ TVL
Sbjct: 1 MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG 60
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG++C+I+GTLYKHMKLKPSILDEYSKERS PLVKPHNFMHPDDHL+LEDESGRV L
Sbjct: 61 LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 120
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GA + P+AYVTG+V+ALHGKETSAG FLV D+L+AG+ PQ LP + EDKYVV VSGL
Sbjct: 121 AGA-IPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLP-SINEDKYVVFVSGL 178
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
++GS NPLQFQLL+DHITGHLGDE EQ IA+ IV VV+AGNS+ I NGQ +ASK
Sbjct: 179 SIGSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASK 238
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
DQSR+ EPIKELDI+LTQ+ A +P+D+MPG NDPANFSLPQQPL+RCLF G+ATYNTF S
Sbjct: 239 DQSRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSS 298
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
C+NPH FELD+VRF+GTSGQ IDDL KYS+A D+LEF+ERTLRWRHLAPTAPN+LGCYP+
Sbjct: 299 CSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPY 358
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPFLVESCPHVYF GNQ K+ET+LL+G ++Q VRL+CIP+F ++GVAV++NL+NLEC
Sbjct: 359 TDKDPFLVESCPHVYFVGNQDKYETQLLQGPEKQKVRLICIPRFCDSGVAVMLNLRNLEC 418
Query: 430 HTLSFGTQF 438
TLSF T F
Sbjct: 419 STLSFSTSF 427
>gi|115450481|ref|NP_001048841.1| Os03g0128500 [Oryza sativa Japonica Group]
gi|13431489|sp|Q9LRE5.1|DPOD2_ORYSJ RecName: Full=DNA polymerase delta small subunit
gi|9188572|dbj|BAA99574.1| OsPol delta small subunit [Oryza sativa Japonica Group]
gi|108705983|gb|ABF93778.1| DNA polymerase delta small subunit, putative, expressed [Oryza
sativa Japonica Group]
gi|113547312|dbj|BAF10755.1| Os03g0128500 [Oryza sativa Japonica Group]
gi|215695508|dbj|BAG90699.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624129|gb|EEE58261.1| hypothetical protein OsJ_09265 [Oryza sativa Japonica Group]
Length = 429
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/429 (72%), Positives = 369/429 (86%), Gaps = 2/429 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKPHLP+ TVL
Sbjct: 1 MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG 60
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG++C+I+GTLYKHMKLKPSILDEYSKERS PLVKPHNFMHPDDHL+LEDESGRV L
Sbjct: 61 LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 120
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GA + P+AYVTG+V+ALHGKETSAG FLV D+L+AG+ PQ LP + EDKYVV VSGL
Sbjct: 121 AGA-IPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLP-SINEDKYVVFVSGL 178
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
++GS NPLQFQLL+DHITGHLGDE EQ IA+ IV VV+AGNS+ I NGQ +ASK
Sbjct: 179 SIGSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASK 238
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
DQSR+ EPIKELDI+LTQ+ A +P+D+MPG NDPANFSLPQQPL+RCLF G+ATYNTF S
Sbjct: 239 DQSRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSS 298
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
C+NPH FELD+VRF+GTSGQ IDDL KYS+A D+LEF+ERTLRWRHLAPTAPN+LGCYP+
Sbjct: 299 CSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPY 358
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPFLVESCPHVYF GNQ K+ET+LL+G ++Q VRL+CIP+F ++GVAV++NL+NLEC
Sbjct: 359 TDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLEC 418
Query: 430 HTLSFGTQF 438
TLSF T F
Sbjct: 419 STLSFSTSF 427
>gi|242037091|ref|XP_002465940.1| hypothetical protein SORBIDRAFT_01g048590 [Sorghum bicolor]
gi|241919794|gb|EER92938.1| hypothetical protein SORBIDRAFT_01g048590 [Sorghum bicolor]
Length = 435
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/429 (72%), Positives = 370/429 (86%), Gaps = 2/429 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKP LP+ TVL
Sbjct: 7 MERKQAAYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPQLPVTTVLG 66
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG++C+I+GTLYKHMKLKPSILDEY+KERS PLVKPHNFMHPDDHL+LEDESGRV L
Sbjct: 67 LEEGKDCIIVGTLYKHMKLKPSILDEYAKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 126
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GA + P+A+VTG+VVALHGKETSAG FLV DVL+AGL PQ L ++ EDKYVV VSGL
Sbjct: 127 AGA-IPPAAFVTGVVVALHGKETSAGNFLVEDVLEAGLPPQTALS-SAAEDKYVVFVSGL 184
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
+VGS T NPLQFQLL+DH+TGHLGDE EQ IA+ IV VV+AGNS+ I +NGQ +ASK
Sbjct: 185 SVGSDTFNPLQFQLLIDHVTGHLGDENEQSIASNIVRVVVAGNSVHISPRFVNGQTVASK 244
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
DQSR+ EPIKELDI+LTQ+ A +P+D+MPG +DPANFSLPQQPL+RCLF G++TYNTF S
Sbjct: 245 DQSRIAEPIKELDIMLTQLVASLPVDMMPGCHDPANFSLPQQPLHRCLFSGASTYNTFSS 304
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
C+NPH FELD+V+FLGTSGQ IDDL KYS+A D+LEFMERTLRWRHLAPTAPN+LGCYP+
Sbjct: 305 CSNPHQFELDSVQFLGTSGQNIDDLYKYSDAKDKLEFMERTLRWRHLAPTAPNSLGCYPY 364
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPFLVESCPHVYF GNQ K+ETRLL+G ++Q VRL+ IP+FSE+GVAV++NL+NLEC
Sbjct: 365 TDKDPFLVESCPHVYFVGNQDKYETRLLEGPEKQKVRLISIPRFSESGVAVMLNLRNLEC 424
Query: 430 HTLSFGTQF 438
TLSF T F
Sbjct: 425 STLSFSTSF 433
>gi|293335627|ref|NP_001168398.1| uncharacterized protein LOC100382167 [Zea mays]
gi|223948007|gb|ACN28087.1| unknown [Zea mays]
gi|414864557|tpg|DAA43114.1| TPA: hypothetical protein ZEAMMB73_615392 [Zea mays]
Length = 435
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/429 (72%), Positives = 368/429 (85%), Gaps = 2/429 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKP LP+ TVL
Sbjct: 7 MERKQAAYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPQLPVTTVLG 66
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG++C+I+GTLYKHMKLKPSILDEY+KERS PLVKPHNFMHPDDHL+LEDESGRV L
Sbjct: 67 LEEGKDCIIVGTLYKHMKLKPSILDEYAKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 126
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GA + P+A+VTG+VVALHGKETSAG FLV DVL+AGL PQ L ++ EDKYVV +SGL
Sbjct: 127 AGA-IPPAAFVTGVVVALHGKETSAGNFLVEDVLEAGLPPQSALS-SAEEDKYVVFISGL 184
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
+VGS T NPLQFQLL+DH+TGHLGDE EQ IA+ IV +V+ GNS+ I +NGQ + SK
Sbjct: 185 SVGSDTFNPLQFQLLIDHVTGHLGDENEQSIASNIVRIVVVGNSVHISPRFVNGQTVPSK 244
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
DQSR+ EPIKELDI+LTQ+ A +P+D+MPG +DPANFSLPQQPL+RCLF G++TYNTF S
Sbjct: 245 DQSRIAEPIKELDIMLTQLVASLPVDMMPGCHDPANFSLPQQPLHRCLFSGASTYNTFSS 304
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
C+NPH FELD+V+FLGTSGQ IDDL KYS+A D+LEFMERTLRWRHLAPTAPN+LGCYP+
Sbjct: 305 CSNPHQFELDSVQFLGTSGQNIDDLYKYSDAKDKLEFMERTLRWRHLAPTAPNSLGCYPY 364
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPFLVESCPHVYF GNQ K+ETRLL+G ++Q VRL+ IP+FSE+GVAV++NL+NLEC
Sbjct: 365 TDKDPFLVESCPHVYFVGNQDKYETRLLEGQEKQKVRLISIPRFSESGVAVMLNLRNLEC 424
Query: 430 HTLSFGTQF 438
TLSF T F
Sbjct: 425 STLSFSTSF 433
>gi|357114246|ref|XP_003558911.1| PREDICTED: DNA polymerase delta small subunit-like [Brachypodium
distachyon]
Length = 429
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/429 (71%), Positives = 364/429 (84%), Gaps = 2/429 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR +L +LVP+ KPHLP+ TVL
Sbjct: 1 MERKQADYSTLDERYTIQGERYQGQQYSHIYFTRLHHMRNILRALVPSRKPHLPVTTVLG 60
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG++CV++GTLYKHMKLKPSILDEYSKERS PLVKPHNFMHPDD+L+LEDESGRV L
Sbjct: 61 LEEGKDCVLVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDNLILEDESGRVAL 120
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GA + P+AYVTG+VVALHGKETSAG FLV DVL+AGL PQ LP + EDKYVV VSGL
Sbjct: 121 AGA-ISPAAYVTGVVVALHGKETSAGNFLVEDVLEAGLPPQTALP-SINEDKYVVFVSGL 178
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
+VGS NPLQFQLL+DHITGHLGDE EQ IA+ IV VV+ GNS+ I LNGQ +ASK
Sbjct: 179 SVGSSAFNPLQFQLLIDHITGHLGDENEQAIASNIVRVVVVGNSVHIAPRFLNGQTVASK 238
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
DQ R+ EPI ELDI+LTQ+ A +P+DIMPG NDPANFSLPQQPL+RCLF G++TYNTF S
Sbjct: 239 DQPRIAEPIIELDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFAGASTYNTFSS 298
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
C NPH F+LDNV+F+GTSGQ IDDL +YS+A D+LEFMERTL WRHLAPTAPN+LGCYP+
Sbjct: 299 CPNPHQFDLDNVKFIGTSGQNIDDLYRYSDAKDRLEFMERTLTWRHLAPTAPNSLGCYPY 358
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPFL+ESCPHVYF GNQ ++ETRLL+GS++Q VRL+ IP+FS++G+AV++NL+NLEC
Sbjct: 359 TDKDPFLIESCPHVYFVGNQDRYETRLLQGSEKQQVRLISIPRFSDSGIAVMLNLRNLEC 418
Query: 430 HTLSFGTQF 438
TLSF T F
Sbjct: 419 STLSFSTNF 427
>gi|6063533|dbj|BAA85393.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 445
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/416 (72%), Positives = 358/416 (86%), Gaps = 4/416 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKPHLP+ TVL
Sbjct: 1 MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG 60
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG++C+I+GTLYKHMKLKPSILDEYSKERS PLVKPHNFMHPDDHL+LEDESGRV L
Sbjct: 61 LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 120
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GA + P+AYVTG+V+ALHGKETSAG FLV D+L+AG+ PQ LP + EDKYVV VSGL
Sbjct: 121 AGA-IPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLP-SINEDKYVVFVSGL 178
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
++GS NPLQFQLL+DHITGHLGDE EQ IA+ IV VV+AGNS+ I NGQ +ASK
Sbjct: 179 SIGSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASK 238
Query: 250 DQSRLFEPIKELDILLTQIA--AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
DQSR+ EPIKELDI+LTQ++ A +P+D+MPG NDPANFSLPQQPL+RCLF G+ATYNTF
Sbjct: 239 DQSRIAEPIKELDIMLTQVSLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTF 298
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
SC+NPH FELD+VRF+GTSGQ IDDL KYS+A D+LEF+ERTLRWRHLAPTAPN+LGCY
Sbjct: 299 SSCSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCY 358
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
P+TD+DPFLVESCPHVYF GNQ K+ET+LL+G ++Q VRL+CIP+F ++GVAV+VN
Sbjct: 359 PYTDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMVN 414
>gi|326504838|dbj|BAK06710.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 425
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/418 (72%), Positives = 358/418 (85%), Gaps = 2/418 (0%)
Query: 21 DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIG 80
DE + IQ E Y+GQQYS IY+ RLH MR LL++LVP+ KPHLP+ TVL LE+G++CV++G
Sbjct: 8 DERYTIQGERYQGQQYSHIYYTRLHHMRTLLHALVPSRKPHLPVTTVLGLEKGKDCVLVG 67
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140
TLYKHMKLKPSILDEYSKERS PLVKPHNFMH DD+L+LEDESGRV L GA + P+AYV
Sbjct: 68 TLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHSDDNLILEDESGRVALAGA-IPPAAYV 126
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
TG+VVALHGKETSAG FLV DV++AGL PQ LP EDKYVV VSGL+VGS T NPLQ
Sbjct: 127 TGVVVALHGKETSAGNFLVEDVMEAGLPPQSVLPC-INEDKYVVFVSGLSVGSSTFNPLQ 185
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260
FQLL+DHITGHLGDE EQ IA++IV VV+AGNS+ I LNGQ +A+KDQ R+ EPIKE
Sbjct: 186 FQLLIDHITGHLGDENEQTIASKIVRVVVAGNSVHIAPRFLNGQTVAAKDQPRIAEPIKE 245
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
LDI+LTQ+ A +P+DIMPG NDPANFSLPQQPL+RCLF G++TYNTF SC NPH F+LDN
Sbjct: 246 LDIMLTQLVASLPVDIMPGCNDPANFSLPQQPLHRCLFSGASTYNTFSSCPNPHQFDLDN 305
Query: 321 VRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESC 380
V+ +GTSGQ I DL +YS+A D+LEFMERTL+WRHLAPTAPN+LGCYP+TD+DPFLVE+C
Sbjct: 306 VKCIGTSGQNIHDLYRYSDAKDRLEFMERTLKWRHLAPTAPNSLGCYPYTDKDPFLVETC 365
Query: 381 PHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
PHVYFAGNQ K+ETRLLKG+++Q VRL+ IP+F E+G+AV++NL+NLEC TLSF T F
Sbjct: 366 PHVYFAGNQDKYETRLLKGTEKQQVRLISIPRFCESGIAVMLNLRNLECSTLSFSTSF 423
>gi|148906690|gb|ABR16494.1| unknown [Picea sitchensis]
gi|148907279|gb|ABR16778.1| unknown [Picea sitchensis]
Length = 446
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/440 (64%), Positives = 359/440 (81%), Gaps = 6/440 (1%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
ME+D + L+RKQA Y DE + ++ + YRGQQYS +Y+ RLH R +L +L+ P
Sbjct: 4 MEVDTDSHHLERKQADYKGQDERYLLRMQRYRGQQYSHLYYFRLHKFREILNTLIQKRWP 63
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
+LP CT+L LE+G+EC+I+GT+YK M+LKPS+LDEYSKERS TP+ +PHNFMHPDD+L+L
Sbjct: 64 NLPSCTILGLEDGKECIIVGTVYKQMQLKPSVLDEYSKERSVTPIAQPHNFMHPDDYLIL 123
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG-- 178
ED+SGRVKL G L PS YVTG+V ALHGKE S G+F V +L+AGL PQ PL+SG
Sbjct: 124 EDDSGRVKLTGNVLSPSMYVTGVVAALHGKEGSDGDFYVQSILEAGLPPQH--PLHSGYS 181
Query: 179 --EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
++KY+VLVSGL VGS SNPLQFQLLVD++TGH GDE+EQ +AA+IV V+IAG+S+++
Sbjct: 182 LKDNKYIVLVSGLMVGSMKSNPLQFQLLVDYVTGHSGDEQEQSMAAQIVRVIIAGDSVDM 241
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
+ LL GQ+L K+Q RL EPIKELD+ LTQ+AA +P+DIMPGPNDPANFSLPQQPL++C
Sbjct: 242 QQSLLAGQSLGLKEQRRLAEPIKELDLALTQLAAAMPVDIMPGPNDPANFSLPQQPLHKC 301
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHL 356
LF G++ YNTF S TNPH F+LD V FLGTSGQ IDDL KYS+A ++L++MERTL+WRHL
Sbjct: 302 LFSGASAYNTFVSATNPHQFDLDGVCFLGTSGQNIDDLGKYSDAKEKLDYMERTLKWRHL 361
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
APTAP+TLGCYPFTDRDPF++E CPHVYF GNQ+K+ +RLL+GS+ Q+VRLVCIP F ET
Sbjct: 362 APTAPDTLGCYPFTDRDPFVIEDCPHVYFCGNQKKYASRLLEGSEGQVVRLVCIPSFCET 421
Query: 417 GVAVVVNLKNLECHTLSFGT 436
G AVVVN++NLECH L+ T
Sbjct: 422 GSAVVVNIRNLECHLLTLST 441
>gi|414864556|tpg|DAA43113.1| TPA: hypothetical protein ZEAMMB73_615392 [Zea mays]
Length = 426
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/382 (72%), Positives = 330/382 (86%), Gaps = 2/382 (0%)
Query: 57 NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD 116
N+ H+ + TVL LEEG++C+I+GTLYKHMKLKPSILDEY+KERS PLVKPHNFMHPDD
Sbjct: 45 NFFLHIAVTTVLGLEEGKDCIIVGTLYKHMKLKPSILDEYAKERSAIPLVKPHNFMHPDD 104
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
HL+LEDESGRV L GA + P+A+VTG+VVALHGKETSAG FLV DVL+AGL PQ L +
Sbjct: 105 HLILEDESGRVTLAGA-IPPAAFVTGVVVALHGKETSAGNFLVEDVLEAGLPPQSALS-S 162
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
+ EDKYVV +SGL+VGS T NPLQFQLL+DH+TGHLGDE EQ IA+ IV +V+ GNS+ I
Sbjct: 163 AEEDKYVVFISGLSVGSDTFNPLQFQLLIDHVTGHLGDENEQSIASNIVRIVVVGNSVHI 222
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
+NGQ + SKDQSR+ EPIKELDI+LTQ+ A +P+D+MPG +DPANFSLPQQPL+RC
Sbjct: 223 SPRFVNGQTVPSKDQSRIAEPIKELDIMLTQLVASLPVDMMPGCHDPANFSLPQQPLHRC 282
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHL 356
LF G++TYNTF SC+NPH FELD+V+FLGTSGQ IDDL KYS+A D+LEFMERTLRWRHL
Sbjct: 283 LFSGASTYNTFSSCSNPHQFELDSVQFLGTSGQNIDDLYKYSDAKDKLEFMERTLRWRHL 342
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
APTAPN+LGCYP+TD+DPFLVESCPHVYF GNQ K+ETRLL+G ++Q VRL+ IP+FSE+
Sbjct: 343 APTAPNSLGCYPYTDKDPFLVESCPHVYFVGNQDKYETRLLEGQEKQKVRLISIPRFSES 402
Query: 417 GVAVVVNLKNLECHTLSFGTQF 438
GVAV++NL+NLEC TLSF T F
Sbjct: 403 GVAVMLNLRNLECSTLSFSTSF 424
>gi|23306120|gb|AAN17387.1| Putataive DNA polymerase delta small subunit [Oryza sativa Japonica
Group]
Length = 404
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/403 (67%), Positives = 320/403 (79%), Gaps = 37/403 (9%)
Query: 21 DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIG 80
DE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKPHLP+ TVL LEEG++C+I+G
Sbjct: 8 DERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLGLEEGKDCIIVG 67
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140
TLYKHMKLKPSILDEYSKERS PLVKPHNFMHPDDHL+LEDESGRV L GA + P+AYV
Sbjct: 68 TLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTLAGA-IPPAAYV 126
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
T EDKYVV VSGL++GS NPLQ
Sbjct: 127 TD------------------------------------EDKYVVFVSGLSIGSEKFNPLQ 150
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260
FQLL+DHITGHLGDE EQ IA+ IV VV+AGNS+ I NGQ +ASKDQSR+ EPIKE
Sbjct: 151 FQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASKDQSRIAEPIKE 210
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
LDI+LTQ+ A +P+D+MPG NDPANFSLPQQPL+RCLF G+ATYNTF SC+NPH FELD+
Sbjct: 211 LDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSSCSNPHQFELDS 270
Query: 321 VRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESC 380
VRF+GTSGQ IDDL KYS+A D+LEF+ERTLRWRHLAPTAPN+LGCYP+TD+DPFLVESC
Sbjct: 271 VRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTDKDPFLVESC 330
Query: 381 PHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
PHVYF GNQ K+ET+LL+G ++Q VRL+CIP+F ++GVAV+VN
Sbjct: 331 PHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMVN 373
>gi|168040943|ref|XP_001772952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675685|gb|EDQ62177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/429 (59%), Positives = 325/429 (75%), Gaps = 2/429 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
M+ D + A + R A Y+ D+ + + + Y+GQQYSQ+YF R+ +R L + P
Sbjct: 1 MDTDMDPATIPRLHAPYVSQDQKYGLSMQRYKGQQYSQLYFIRIVTIRQHLTPCIQERWP 60
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
LP+C +L LEE + CV+IGTLYK M+LKPS+LDEYSKERS PL P+ F H DD+L+L
Sbjct: 61 SLPVCNILALEEDKACVVIGTLYKQMQLKPSVLDEYSKERSVVPLASPNKFTHKDDYLIL 120
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKL G+ +L S YVTG+VVA+ G+E GEF V DV+ AGL PQK L NS D
Sbjct: 121 EDESGRVKLTGSAVLSSMYVTGVVVAIVGREEKDGEFFVEDVMVAGLPPQKPLK-NSDVD 179
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
K+V+ VSGL +G +NPL QLLVDH+TGHLG+ +EQ ++++IV +VIAG S+++ +
Sbjct: 180 KFVLFVSGLKIGGHGTNPLDLQLLVDHLTGHLGEVQEQSLSSQIVRMVIAGGSLDLQTSI 239
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
NGQ +++K+QS+L EP+KELD+ LTQI+A +P+DIMPG NDPANFSLPQQPL++CLFPG
Sbjct: 240 SNGQPMSAKNQSKLVEPVKELDLALTQISAAMPVDIMPGANDPANFSLPQQPLHKCLFPG 299
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
+ YNTF S TNPH FELD+V FLGTSGQ IDDL KYSEA D+L+FMERTL WRHLAPTA
Sbjct: 300 ATMYNTFVSATNPHQFELDDVLFLGTSGQNIDDLSKYSEAEDRLDFMERTLMWRHLAPTA 359
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TLGCYPF DRDPF++E+CPHVYF GNQ + +RLL G Q VRLVCIP+F +T A
Sbjct: 360 PDTLGCYPFIDRDPFILETCPHVYFCGNQPHYASRLLTGPSAQKVRLVCIPEFHKTSTA- 418
Query: 421 VVNLKNLEC 429
V+N+ + C
Sbjct: 419 VLNVIKIRC 427
>gi|302779876|ref|XP_002971713.1| hypothetical protein SELMODRAFT_441552 [Selaginella moellendorffii]
gi|300160845|gb|EFJ27462.1| hypothetical protein SELMODRAFT_441552 [Selaginella moellendorffii]
Length = 427
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/430 (56%), Positives = 325/430 (75%), Gaps = 15/430 (3%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
ME+D + L+RK+A Y DE FE + + Y+GQQYS +Y+ RLH +R +L SLV + P
Sbjct: 1 MEVD-DAPPLERKEARYTRKDEDFERRVQRYKGQQYSHLYYCRLHKLRGVLSSLVQSGFP 59
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
+P+C +L LE+G+ CV+IGT+YK MKLKPSILDEY+KERS PL NFMHPDD+LVL
Sbjct: 60 GVPVCPILGLEDGKRCVVIGTIYKQMKLKPSILDEYAKERSKLPLATASNFMHPDDYLVL 119
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKL G+ ++PS YVTGIV+A G G+F V ++++ ED
Sbjct: 120 EDESGRVKLVGSVVVPSNYVTGIVIAACGAAGKDGDFFVQEIIEP-------------ED 166
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYV +SGL +GS +PLQ QLLVDH+TGHLGDE+EQ ++A++V +++AGNS+++ L
Sbjct: 167 KYVAFISGLRIGSDHCDPLQLQLLVDHLTGHLGDEQEQMLSAQVVRLIVAGNSLDMQYNL 226
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
L GQ +++KDQ+RL EP+KELD++LTQIAA +P+DIMPG NDPANF+LPQQ L++CLFPG
Sbjct: 227 LAGQAISAKDQARLTEPVKELDLVLTQIAAAMPVDIMPGANDPANFTLPQQSLHKCLFPG 286
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
++ Y TF TNPH FELD + FLGTSGQ +DDL KYS+A D LE MER+LRWRH+APTA
Sbjct: 287 ASAYCTFLPATNPHRFELDGIEFLGTSGQNVDDLDKYSQAKDVLELMERSLRWRHIAPTA 346
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TLGCYP+TD+DPF+++ CPHVYF GNQ+ +RLL + VR + IP+F ++G AV
Sbjct: 347 PDTLGCYPYTDKDPFVLDKCPHVYFCGNQRSCMSRLLTVEGKS-VRAISIPRFCDSGTAV 405
Query: 421 VVNLKNLECH 430
+VNL+ L+ H
Sbjct: 406 LVNLRTLDYH 415
>gi|302819832|ref|XP_002991585.1| hypothetical protein SELMODRAFT_429905 [Selaginella moellendorffii]
gi|300140618|gb|EFJ07339.1| hypothetical protein SELMODRAFT_429905 [Selaginella moellendorffii]
Length = 448
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/438 (55%), Positives = 322/438 (73%), Gaps = 20/438 (4%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
ME+D + L+RK+A Y DE FE + + Y+GQQYS +Y+ RLH +R L SLV + P
Sbjct: 6 MEVD-DAPPLERKEARYTRKDEDFERRVQRYKGQQYSHLYYCRLHKLRGALSSLVQSGFP 64
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
+P+C +L LE+G+ CV+IGT+YK MKLKPSILDEY+KERS PL NFMHPDD+LVL
Sbjct: 65 GVPVCPILGLEDGKRCVVIGTIYKQMKLKPSILDEYAKERSKLPLATASNFMHPDDYLVL 124
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKL G+ ++PS YVTGIV+A G G+F V ++++ ED
Sbjct: 125 EDESGRVKLVGSVVVPSNYVTGIVIAACGAAGKDGDFFVQEIIEP-------------ED 171
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYV +SGL +GS +PLQ QLLVDH+TGHLGDE+EQ ++A+++ +++AGNS+++ L
Sbjct: 172 KYVAFISGLRIGSDHCDPLQLQLLVDHLTGHLGDEQEQMLSAQVIRLIVAGNSLDMQYNL 231
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
L GQ +++KDQ+RL EP+KELD++LTQIAA +P+DIMPG NDPANF+LPQQ L++CLFPG
Sbjct: 232 LAGQAISAKDQARLTEPVKELDLVLTQIAAAMPVDIMPGANDPANFTLPQQSLHKCLFPG 291
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
++ Y TF TNPH FELD + FLGTSGQ +DDL KYSEA D LE MERTLRWRH+APTA
Sbjct: 292 ASAYCTFLPATNPHRFELDGIEFLGTSGQNVDDLDKYSEAKDVLELMERTLRWRHIAPTA 351
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TLGCYP+TD+DPF+++ CPHVYF GNQ+ +RLL + VR + IP+F ++G AV
Sbjct: 352 PDTLGCYPYTDKDPFVLDRCPHVYFCGNQRSCMSRLLTVEGKS-VRAISIPRFCDSGTAV 410
Query: 421 VVNLKNLECHTLSFGTQF 438
+V C FG+
Sbjct: 411 LVT-----CSDRLFGSNI 423
>gi|302814917|ref|XP_002989141.1| hypothetical protein SELMODRAFT_129338 [Selaginella moellendorffii]
gi|300143041|gb|EFJ09735.1| hypothetical protein SELMODRAFT_129338 [Selaginella moellendorffii]
Length = 425
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/417 (57%), Positives = 320/417 (76%), Gaps = 12/417 (2%)
Query: 21 DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIG 80
DE FE + + Y+GQQYS +Y+ RLH R +L S+V + P +P+ +L L++G+ CV+IG
Sbjct: 1 DEDFERRDQRYKGQQYSHLYYCRLHKFREVLGSIVQSSLPRVPVSPILGLKDGKRCVVIG 60
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140
T+YK MKLKPSILDEY+KER T PL +FMH +D+LVLED SGRVKL G+ ++PS YV
Sbjct: 61 TVYKQMKLKPSILDEYAKER-TKPLATASSFMHSEDYLVLEDASGRVKLVGSMIVPSNYV 119
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE---------DKYVVLVSGLNV 191
TGIV+A G+ G+F V +++ GL PQ LP +G+ DKYV LVSGL +
Sbjct: 120 TGIVIAAWGQGGKDGDFFVRQIIEPGLPPQSPLPSITGKPACPYLKFRDKYVALVSGLRI 179
Query: 192 GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251
GS NPLQ QLLVDH+TGHLGDE+EQ ++A++V +++AGNS+++ LL GQ +++KDQ
Sbjct: 180 GSDHCNPLQIQLLVDHLTGHLGDEQEQMLSAQVVRLIVAGNSLDVQYNLLAGQAISAKDQ 239
Query: 252 SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT 311
+RL EP+KELDI+LTQ+ A +P+DIMPG NDPANF+LPQQPL++CLFPG++ Y+TF S T
Sbjct: 240 ARLTEPVKELDIVLTQVTAAMPVDIMPGANDPANFTLPQQPLHKCLFPGASAYSTFLSAT 299
Query: 312 NPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL-GCYPFT 370
NPH FELD + FLGTSGQ +DDL+KYSEA D +E MERTLRWRH+APTAP+TL GC+P+T
Sbjct: 300 NPHRFELDGIEFLGTSGQNVDDLEKYSEAKDVIELMERTLRWRHIAPTAPDTLAGCFPYT 359
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSD-RQLVRLVCIPKFSETGVAVVVNLKN 426
D+DPF++++CPHVYF GNQ+ F +RL+ G +LVR + IP+F ++G AV+V +
Sbjct: 360 DKDPFVLDTCPHVYFCGNQKSFMSRLVTGMYIWKLVRAISIPRFCDSGTAVMVTCSD 416
>gi|302811339|ref|XP_002987359.1| hypothetical protein SELMODRAFT_125908 [Selaginella moellendorffii]
gi|300144994|gb|EFJ11674.1| hypothetical protein SELMODRAFT_125908 [Selaginella moellendorffii]
Length = 442
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 237/434 (54%), Positives = 320/434 (73%), Gaps = 29/434 (6%)
Query: 21 DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIG 80
DE FE + + Y+GQQYS +Y+ RLH R +L S+V + P +P+ +L L++G+ CV+IG
Sbjct: 1 DEDFERRDQRYKGQQYSHLYYCRLHKFREVLGSIVQSSLPRVPVSPILGLKDGKRCVVIG 60
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140
T+YK MKLKPSILDEY+KER T PL +FMH +D+LVLED SGRVKL G+ ++PS YV
Sbjct: 61 TVYKQMKLKPSILDEYAKER-TKPLATASSFMHSEDYLVLEDASGRVKLVGSMIVPSNYV 119
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE---------DKYVVLVSGLNV 191
TGIV+A G+ G+F V +++ GL PQ LP +G+ DKYV LVSGL +
Sbjct: 120 TGIVIAAWGQGGKDGDFFVRQIIEPGLPPQSPLPSITGKPACPYLKFRDKYVALVSGLRI 179
Query: 192 GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251
GS NPLQ QLLVDH+TGHLGDE+EQ ++A++V +++AGNS+++ LL GQ +++KDQ
Sbjct: 180 GSDHCNPLQIQLLVDHLTGHLGDEQEQMLSAQVVRLIVAGNSLDVQYNLLAGQAISAKDQ 239
Query: 252 SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT 311
+RL EP+KELDI+L Q+ A +P+DIMPG NDPANF+LPQQPL++CLFPG++ Y+TF S T
Sbjct: 240 ARLTEPVKELDIVLAQVTAAMPVDIMPGANDPANFTLPQQPLHKCLFPGASAYSTFLSAT 299
Query: 312 NPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL-GCYPFT 370
NPH FELD + FLGTSGQ +DDL+KYSEA D +E MERTLRWRH+AP+AP+TL GC+P+T
Sbjct: 300 NPHRFELDGIEFLGTSGQNVDDLEKYSEAKDVIELMERTLRWRHIAPSAPDTLAGCFPYT 359
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGS------------------DRQLVRLVCIPK 412
D+DPF++++CPHVYF GNQ+ F TRL+ G + +LVR + IP+
Sbjct: 360 DKDPFVLDTCPHVYFCGNQKSFMTRLVTGMYICLALHRLFLTADCFLVEGKLVRAISIPR 419
Query: 413 FSETGVAVVVNLKN 426
F ++G AV+V +
Sbjct: 420 FCDSGTAVMVTCSD 433
>gi|307106804|gb|EFN55049.1| hypothetical protein CHLNCDRAFT_35821 [Chlorella variabilis]
Length = 468
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 197/426 (46%), Positives = 267/426 (62%), Gaps = 5/426 (1%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELE 71
R A++ D F ++ Y +QYSQ+Y+ RL MR P + + +L +
Sbjct: 40 RMAASFTPKDNRFLLKNRDYD-RQYSQLYYYRLEQMRKHAEEAAQRAWPGIQVVHILSVP 98
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG 131
E E I GTLYK M LKPSILDEY K+R+ + + F PDD L+LEDE R+ L G
Sbjct: 99 EEGEVAIAGTLYKEMALKPSILDEYVKDRTMSQQLGRARFTQPDDRLILEDEGARLALCG 158
Query: 132 AELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNV 191
+L VTG+V A+ G G+F LD+ AGL PQ LP GEDKYV LVSGL V
Sbjct: 159 DKLPVGECVTGVVAAVRGHVLPNGDFEALDLCYAGLPPQAPLP-AVGEDKYVALVSGLGV 217
Query: 192 GSGTSNPLQFQLLVDHITGHLGDEKEQG-IAAEIVHVVIAGNSIEIPRGLLNGQNLAS-K 249
G G S+PL+ +LLVD+++G LG E+E+G + I VV+AG ++ L +S +
Sbjct: 218 GDGESSPLRLELLVDYLSGLLGGEQERGQVVGRIARVVVAGGLLKSNADLSQPTAYSSVR 277
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ P++++D+ LT++AA VPL IMPG DPAN++LPQQPL+RC+FPG+A Y+T
Sbjct: 278 QQAAALGPVRDVDMALTELAAAVPLGIMPGAGDPANYTLPQQPLHRCMFPGAAAYSTLHR 337
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNPH FELD V FLGTSGQ +DD+ +YSE D++ +E+ LRWRHLAPTAP+TL YP+
Sbjct: 338 ATNPHEFELDGVTFLGTSGQNVDDVCRYSELEDRVTILEKLLRWRHLAPTAPDTLAAYPY 397
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLL-KGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
+ DPF++ S PHV FAG Q +F T L+ + + R+V +P F TG V+VNL L
Sbjct: 398 FNNDPFILRSTPHVLFAGGQPQFGTALVEEEAGGAACRVVAVPNFCTTGCVVLVNLATLY 457
Query: 429 CHTLSF 434
C + F
Sbjct: 458 CQPIYF 463
>gi|255085562|ref|XP_002505212.1| predicted protein [Micromonas sp. RCC299]
gi|226520481|gb|ACO66470.1| predicted protein [Micromonas sp. RCC299]
Length = 455
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 196/445 (44%), Positives = 272/445 (61%), Gaps = 24/445 (5%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
LQR Y DE F + K+ Y QY Q+YF RL L+ L V P +P VL+
Sbjct: 15 LQRAVLDYSARDERFALDKKIY--GQYFQLYFQRLMLLGPRLKQAVGAKWPGVPAVKVLD 72
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKER-STTPLVKPHNFMHPDDHLVLEDESGRVK 128
L+EG ECV++GTLYK MKLKPSILDEY KE + V F+ DD LVLEDE RV+
Sbjct: 73 LKEGEECVVMGTLYKDMKLKPSILDEYVKEAGAKASEVAAKKFVSDDDSLVLEDEGARVR 132
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE----DKYVV 184
L G + +VTG+V+A+ G+ + GEF V ++ APQ P + E ++V+
Sbjct: 133 LTGKGVAVDCFVTGVVLAVKGRVVANGEFEVDEICYPAPAPQATRPSATDEASSAGRHVL 192
Query: 185 LVSGLNVGS-GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG 243
L SGL VG S+ L +L+ D++TG+LG EQG+AA I VVI G ++ P +
Sbjct: 193 LCSGLRVGDDAASSALNLELMCDYVTGNLGGANEQGVAASIARVVICGGAL--PEVDVPA 250
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
Q+L + Q+ + P+++LD+LLT +AA VP+D+MPG DP N +LPQQPL+ CLFP +
Sbjct: 251 QSLDGRAQAAVARPLRQLDVLLTTLAASVPVDLMPGDGDPTNQALPQQPLHPCLFPEAKR 310
Query: 304 YN--TFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA-----------NDQLEFMERT 350
++ TF SCTNPH F + V FLGT+GQ + +L Y+ + L+ ME T
Sbjct: 311 FSPHTFASCTNPHDFTIGGVDFLGTAGQNVSNLAAYTNVVKGGAGGDDDAGEALDLMEAT 370
Query: 351 LRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCI 410
+RW+H+AP+AP+TL CYP+ DRDPF +E PHVYFAG Q F R ++ D + V V +
Sbjct: 371 VRWQHVAPSAPDTLACYPYKDRDPFFIERSPHVYFAGMQPAFGCRKVRVGDAETV-CVSV 429
Query: 411 PKFSETGVAVVVNLKNLECHTLSFG 435
P FS+T V++++ LECH ++FG
Sbjct: 430 PDFSKTSAVVLLDVDTLECHPVTFG 454
>gi|302838033|ref|XP_002950575.1| hypothetical protein VOLCADRAFT_81183 [Volvox carteri f.
nagariensis]
gi|300264124|gb|EFJ48321.1| hypothetical protein VOLCADRAFT_81183 [Volvox carteri f.
nagariensis]
Length = 514
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 201/478 (42%), Positives = 279/478 (58%), Gaps = 51/478 (10%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICT 66
+ R ATY LD+ F K +Y +QY+Q+YF+RL L++ ++ + V P +P+CT
Sbjct: 32 DTSFNRASATYSNLDDRFRAAKRSYE-RQYAQLYFSRLMLLKEVMLARVQQLWPGVPVCT 90
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
+LE+ E +E +IGT+YK+MKLKPSILDEYSK+R + NF DD LVLEDE R
Sbjct: 91 ILEVPESKEVAVIGTVYKNMKLKPSILDEYSKDRGLKAALGAANFCSGDDSLVLEDEGAR 150
Query: 127 VKL------GGAE-----------LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
+ L G A L VTG+V+A+ G G+F+V V G+AP
Sbjct: 151 MVLRDVAGPGPAGGSTTSGGGSEPLNVQEIVTGLVLAVRGVHEPGGDFIVNAVCFPGMAP 210
Query: 170 QKE-LP----------------LNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHL 212
LP + DKYV L SG +GS ++ L+ QL +D +TG+L
Sbjct: 211 NPHPLPAPVPHRAAAATAAVVAAGAPGDKYVALASGFCLGSSKADMLKTQLALDFLTGNL 270
Query: 213 GDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS--------KDQSRLFEPIKELDIL 264
G EQ ++A+IV +V+AG I L G S + Q +P+++LD+L
Sbjct: 271 GSPVEQQLSAQIVRLVVAGGCIGQLEALAGGGGGGSGSSNPYNRQAQGVALQPVRDLDLL 330
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L +++AG+ +D+MPG DPAN +LPQQP++RCLFP + +F TNPH FE D VR L
Sbjct: 331 LAELSAGMSVDVMPGAEDPANVALPQQPMHRCLFPAAGMQGSFVRATNPHEFESDGVRLL 390
Query: 325 GTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVY 384
G SGQ +DD+ KY D+L+ M+R++ RH+APTAP+TL CYPF D+DPF++E+ PHVY
Sbjct: 391 GCSGQNVDDMAKYCGIRDRLDIMQRSVESRHIAPTAPDTLTCYPFHDKDPFILETTPHVY 450
Query: 385 FAGNQQKFETRLLKGSDRQ--------LVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
F GNQ +F TRLL G +VRLV +P F TG V++NL+ L CH L F
Sbjct: 451 FVGNQPEFATRLLGGGSAAGAAAAAGPVVRLVTVPSFVRTGTIVLINLRTLACHPLRF 508
>gi|47086937|ref|NP_998468.1| DNA polymerase delta subunit 2 [Danio rerio]
gi|16501182|emb|CAD10079.1| novel protein similar to human DNA directed polymerase delta 2,
regulatory subunit (50kD) (POLD2) [Danio rerio]
gi|42744580|gb|AAH66617.1| Polymerase (DNA directed), delta 2, regulatory subunit [Danio
rerio]
gi|213624856|gb|AAI71676.1| Polymerase (DNA directed), delta 2, regulatory subunit [Danio
rerio]
gi|213625950|gb|AAI71678.1| Polymerase (DNA directed), delta 2, regulatory subunit [Danio
rerio]
Length = 467
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 195/439 (44%), Positives = 271/439 (61%), Gaps = 11/439 (2%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLP 63
EE +R + Y E F I + ++ +QY+ IY RL MR +L + W +P
Sbjct: 18 SEEPVFERAEPAYSGCSERFRIGERSF-SRQYAHIYATRLMQMRQILTERATHKWGTEVP 76
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
I + +L+ G ECVI+GT++KHM+L+PSIL E S+E + P ++ D L+LEDE
Sbjct: 77 IRKLCDLQMGEECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSDELILEDE 136
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKY 182
R+KL G P +VTG V+A+ G E + G+F V D A + PQ PL+S D++
Sbjct: 137 LQRIKLEGNIDAPK-FVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLSS--DRF 193
Query: 183 VVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIP 237
V+L SGL + GS + + QLLVD +TG LGDE EQ AA I V++AGN S +
Sbjct: 194 VLLASGLGLNGSRADSMMGLQLLVDMVTGQLGDEGEQSGAASISRVILAGNLLSRSTQDK 253
Query: 238 RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
+ L K Q+ E I+ LD LL Q+ A V +D+MPG DP N++LPQQPL+RC+
Sbjct: 254 DSTNKAKYLTKKTQAGSVEAIRLLDELLMQLVASVSVDVMPGQYDPTNYTLPQQPLHRCM 313
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
FP S + T + NP+ +D VRFLGT+GQ + D+ KYS +D LE +E TLR RHLA
Sbjct: 314 FPLSIPFPTLQLVINPYQAIVDGVRFLGTAGQNVSDIGKYSSVDDHLEILESTLRLRHLA 373
Query: 358 PTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETG 417
PTAP+TLGCYPF +DPF++E CPHVYF+GN ++++ + G + Q V LV IP+FS T
Sbjct: 374 PTAPDTLGCYPFYQKDPFILEECPHVYFSGNAPSYQSKRVTGPEGQDVLLVAIPEFSSTQ 433
Query: 418 VAVVVNLKNLECHTLSFGT 436
A +VNL+ LEC +SF +
Sbjct: 434 TACLVNLRTLECEPISFSS 452
>gi|28279582|gb|AAH45410.1| Pold2 protein [Danio rerio]
gi|182891524|gb|AAI64684.1| Pold2 protein [Danio rerio]
Length = 467
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 195/439 (44%), Positives = 272/439 (61%), Gaps = 11/439 (2%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLP 63
EE +R + Y E F I + ++ +QY+ IY RL MR +L + W +P
Sbjct: 18 SEEPVFERAEPAYSGCSERFRIGERSF-SRQYAHIYATRLMQMRQILTERATHKWGTEVP 76
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
I + +L+ G ECVI+GT++KHM+L+PSIL E S+E + P ++ D L+LEDE
Sbjct: 77 IRKLCDLQMGEECVIVGTIFKHMELQPSILREISEEHNLLPQPPRAKYISQSDELILEDE 136
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKY 182
R+KL G P +VTG V+A+ G E + G+F V D A + PQ PL+S D++
Sbjct: 137 LQRIKLEGNIDAPK-FVTGSVIAIKGAEQNDGKFTVEDFCMADVPPQTPRQPLSS--DRF 193
Query: 183 VVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIP 237
V+L SGL + GS + + QLLVD +TG LGDE EQ AA I V++AGN S +
Sbjct: 194 VLLASGLGLNGSRADSMMGLQLLVDMVTGQLGDEGEQSGAASISRVILAGNLLSRSTQDK 253
Query: 238 RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
+ L K Q+ E I+ LD LL Q+ A V +D+MPG DP N++LPQQPL+RC+
Sbjct: 254 DSTNKAKYLTKKTQAGSVEAIRLLDELLMQLVASVSVDVMPGQYDPTNYTLPQQPLHRCM 313
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
FP S + T + +NP+ +D VRFLGT+GQ + D+ KYS +D LE +E TLR RHLA
Sbjct: 314 FPLSIPFPTLQLVSNPYQAIVDGVRFLGTAGQNVSDMVKYSSVDDHLEILESTLRLRHLA 373
Query: 358 PTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETG 417
PTAP+TLGCYPF +DPF++E CPHVYF+GN ++++ + G + Q V LV IP+FS T
Sbjct: 374 PTAPDTLGCYPFYQKDPFILEECPHVYFSGNAPLYQSKRVTGPEGQDVLLVAIPEFSSTQ 433
Query: 418 VAVVVNLKNLECHTLSFGT 436
A +VNL+ LEC +SF +
Sbjct: 434 TACLVNLRTLECEPISFSS 452
>gi|291238172|ref|XP_002738996.1| PREDICTED: DNA-directed DNA polymerase delta 2-like [Saccoglossus
kowalevskii]
Length = 465
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 269/439 (61%), Gaps = 8/439 (1%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPI 64
++A QR+ +Y L + F ++ ++ +QY+ +Y RL MR +L W + +
Sbjct: 15 DQAEFQRQSCSYKNLSDRFRVKNRSF-SRQYAHLYAERLLSMRPMLTRAAKKKWGDAIRL 73
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDES 124
+ +L+ G +C +IGTL+KHM LKPSIL E S+E + P + D L+LEDE
Sbjct: 74 KKLCDLKLGEKCCVIGTLFKHMNLKPSILKEISEEINLMPQPVKSKYTDESDVLILEDEL 133
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVV 184
R+ L G + +A VTGI+VA++G E G F V D A L P++ P S +DK+V
Sbjct: 134 QRITLVGKLDVHTA-VTGIIVAVYGCEKDGGLFQVDDFCYAEL-PEQVKPSLSKDDKFVA 191
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI----EIPRGL 240
LVSGL +G + + Q+ VD ITG LG +Q + + IV V+IAGNS+ + L
Sbjct: 192 LVSGLGIGQEGHHLMGLQMFVDTITGQLGGVDDQELNSNIVRVIIAGNSLSRKMQDKDAL 251
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
+ L K Q E +K LD +LT++A+ +P+DIMPG DPAN+++PQQP RC+FP
Sbjct: 252 TTARYLTKKSQPGSVEGVKRLDDILTELASCLPVDIMPGEYDPANYTMPQQPFPRCMFPQ 311
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
S Y T TNP+ E+ +RFLGTSGQ I D+ ++S D+LE +E+TL H+APTA
Sbjct: 312 SRCYPTLEPVTNPYDVEIAGIRFLGTSGQNIHDIYQFSAMEDKLEILEKTLLTCHIAPTA 371
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TLGCYPF ++DPF++ CPH+YFAGNQ +F+T+ + Q V LV IPKFSE+ V
Sbjct: 372 PDTLGCYPFYEKDPFIITQCPHIYFAGNQSEFKTKTVDLITGQKVLLVTIPKFSESYTCV 431
Query: 421 VVNLKNLECHTLSFGTQFS 439
+VNL+ LEC + F + +
Sbjct: 432 LVNLRTLECQPMKFASHLT 450
>gi|440804352|gb|ELR25229.1| DNA polymerase epsilon subunit B protein [Acanthamoeba castellanii
str. Neff]
Length = 482
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 183/454 (40%), Positives = 266/454 (58%), Gaps = 31/454 (6%)
Query: 2 EIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKP 60
E G++ +++R+ Y F + Y QQY+ +Y+ RL MR LL + W+
Sbjct: 41 EEKGKKHKIRRETGDYDAAHHRFRTLTKEY-SQQYAPLYYHRLQKMRPRLLQAAKERWEG 99
Query: 61 HLPICT--------------VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLV 106
L + + +LEL E ++ GTLYK M L+P+IL+ Y+KERS P
Sbjct: 100 KLGVSSSSSSTAKLPRIVNKILELRADEEVIVAGTLYKEMPLRPNILESYAKERSIIPPP 159
Query: 107 KPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAG 166
N++ D L++EDESGR+ L G +L VTGI+VA+ G E G+F V D++ G
Sbjct: 160 LRSNYVSEKDRLIIEDESGRISLVGVDLPTDLVVTGIIVAIRGVELKDGDFQVDDIIFTG 219
Query: 167 LAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVH 226
+ Q + P+ +DKYV LVSG+N+G NPL QL+VD+++GH+G EQ + I
Sbjct: 220 IPMQLKRPILE-KDKYVALVSGINIGEEVRNPLAVQLMVDYLSGHIGGAAEQEFESRISR 278
Query: 227 VVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANF 286
++IAGNS+ P +G +K +L Q+AA + +DIMPG DPANF
Sbjct: 279 LIIAGNSLVPPEEKTDGAA------------VKNYQKVLCQLAASMHVDIMPGAGDPANF 326
Query: 287 SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN--DQL 344
LPQQP N CLFP ++ Y TF S TNP+ +D + +G SGQ +DD++KY + + D L
Sbjct: 327 VLPQQPFNPCLFPTASRYATFSSVTNPYQCRVDGLFIVGHSGQPVDDIKKYIDPSKTDTL 386
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL 404
ME TL W HLAPT P+TLG YPF+ DPF+++ CPH+YFA NQ ++++L+ G Q+
Sbjct: 387 RIMEDTLNWSHLAPTTPDTLGAYPFSGEDPFVLDECPHIYFAANQATYDSKLITGPKGQV 446
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
VRL+ +P F++T V+VNLK L H ++F
Sbjct: 447 VRLISVPSFTKTSTIVLVNLKTLATHPITFNADL 480
>gi|384253871|gb|EIE27345.1| DNA polymerase delta small subunit like protein [Coccomyxa
subellipsoidea C-169]
Length = 396
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 180/387 (46%), Positives = 245/387 (63%), Gaps = 9/387 (2%)
Query: 57 NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD 116
W P +P+ +L+L E +E ++GTLYK MKLKPSIL+EY+KER L F+ DD
Sbjct: 12 QW-PGVPVTKILDLPENQEVAVLGTLYKEMKLKPSILNEYNKERGIETLTGHTGFVSDDD 70
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
LVLEDES R+ L G + P VTG++ A+ G + GEF V D+L G PQ+ LP
Sbjct: 71 SLVLEDESARMALRGIDAGP--LVTGVIAAVRGVSAANGEFHVKDMLFIGPQPQQPLPEA 128
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
+G DKYV LVSGL+VG P + LLVD++ G LG EQ A++V VIAG ++
Sbjct: 129 TG-DKYVALVSGLSVGGEAGEPARVALLVDYLAGLLGGLPEQEQVAKVVRTVIAGGLLQS 187
Query: 237 PRGLLNGQNLAS-KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
L+ A + Q+ PIK++D+ LTQ+ + +D+M G DPAN +LPQQ L+
Sbjct: 188 MEALVQAAPQAKQRQQTAALVPIKDMDMCLTQLVGAMDVDVMAGATDPANHALPQQALHP 247
Query: 296 CLFPGSATYNTFRS----CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTL 351
CL PG+ T+ T TNPH FE+D V FLGTSGQ ++D+ +YS ++L +ER L
Sbjct: 248 CLLPGAVTFPTLHRQALLVTNPHEFEVDGVTFLGTSGQNLEDIDRYSTETERLPVLERLL 307
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIP 411
W HL PTAP+TL Y F DRDPF++++ PHV FAGNQ F TRL++G + Q R+VCIP
Sbjct: 308 EWGHLVPTAPDTLTAYSFPDRDPFVIDAAPHVLFAGNQPAFATRLVEGLEGQKTRVVCIP 367
Query: 412 KFSETGVAVVVNLKNLECHTLSFGTQF 438
KFS +G V+VNL+ L+ ++F T+
Sbjct: 368 KFSSSGTLVLVNLRTLKVQPITFDTRM 394
>gi|348516100|ref|XP_003445577.1| PREDICTED: DNA polymerase delta subunit 2 [Oreochromis niloticus]
Length = 471
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 193/434 (44%), Positives = 269/434 (61%), Gaps = 11/434 (2%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVL 68
+R Y E + + + ++ +QY+ IY ARL MR LL W + I +
Sbjct: 27 FERTSLAYSQCSERYRVGERSF-SRQYAHIYAARLMQMRPLLSERAQQKWGSDVVIKKLC 85
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
+LE +C I+GTL+K M L+PSIL E S+E + P ++H D L+LEDE R+K
Sbjct: 86 DLETAEQCCIVGTLFKRMDLQPSILKEISEEHNLLPQPARAKYIHESDELILEDELQRIK 145
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYVVLVS 187
L G ++ VTG V+A++G E + G+F V D A L QK P L+S D++V+L S
Sbjct: 146 LEG-KIDKDKCVTGSVIAVYGAERNDGKFTVEDFCTADLPLQKARPPLDS--DRFVLLAS 202
Query: 188 GLNVGSGTSNP-LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLN 242
GL +GS ++ L QLLVD +TG LGD EQ AA I V++AGN + +
Sbjct: 203 GLGLGSTHADSMLGLQLLVDMVTGQLGDLGEQSGAATISRVLLAGNLLSQNTQDKDASTK 262
Query: 243 GQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSA 302
+ L K Q+ + I+ LD LL Q+ A VP+D+MPG DP N++LPQQPL+RC+FP S+
Sbjct: 263 AKYLTKKTQAGSVDAIRLLDELLLQLVASVPVDVMPGQYDPTNYTLPQQPLHRCMFPLSS 322
Query: 303 TYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPN 362
Y T + +NP+ +D VRFLGTSGQ + D+Q+YS + LE +E TLR RHLAPTAP+
Sbjct: 323 VYPTLQLASNPYHASIDGVRFLGTSGQNVCDIQRYSSRDSHLEILEETLRLRHLAPTAPD 382
Query: 363 TLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
TLGCYPF +DPF++E CPHVYF+GN F+++L+KG D Q V LV +P+FS T +A +V
Sbjct: 383 TLGCYPFYQKDPFILEECPHVYFSGNAPTFDSKLIKGPDGQEVLLVTVPEFSSTQIACLV 442
Query: 423 NLKNLECHTLSFGT 436
NL+ L C +SF
Sbjct: 443 NLRTLHCEPISFSA 456
>gi|260824487|ref|XP_002607199.1| hypothetical protein BRAFLDRAFT_68004 [Branchiostoma floridae]
gi|229292545|gb|EEN63209.1| hypothetical protein BRAFLDRAFT_68004 [Branchiostoma floridae]
Length = 449
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 195/432 (45%), Positives = 270/432 (62%), Gaps = 8/432 (1%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPI 64
GE A+ +R Q +Y L + F +++ + G+QY+ IY RL M+ L K +
Sbjct: 7 GEFAQYERAQCSYENLSQRFMLKQRNF-GRQYAHIYAVRLWEMKDRLKKAAKR-KWGVDA 64
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDES 124
+ E+E G CV+IGTL+KHM+LKPSIL E S+E P + D+L+LEDE
Sbjct: 65 KKLSEMETGETCVVIGTLFKHMELKPSILKEISEEEGAMPQPPRAKYTEDADNLILEDEV 124
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVV 184
RV L G +L + VTG +VA++G E +G+F V D + Q L ED++VV
Sbjct: 125 QRVSLAG-KLDVQSSVTGTIVAVYGAEDESGKFQVKDFCYVDMPVQDSLQ-TPEEDRFVV 182
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI----EIPRGL 240
LVSGL +GS N L+ QLLVD +TG LGD +Q AA IV V++AGNS+ + L
Sbjct: 183 LVSGLGIGSSQDNLLELQLLVDLVTGQLGDVGDQKSAANIVRVIMAGNSLSESTQDKDSL 242
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
+ L+ K + E +K LD L Q+++ V +D+MPG DPAN LPQQPL+RC+FP
Sbjct: 243 TKAKYLSRKTAAGSVEAMKVLDDFLVQLSSCVDVDVMPGDFDPANHVLPQQPLHRCMFPR 302
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
+ Y T + NP+ ++ VRFLGTSGQ I+D+ KYS + LE +E+TL HLAPTA
Sbjct: 303 AMKYPTMHTVPNPYEADVGGVRFLGTSGQNIEDIYKYSSLENSLEILEKTLTVGHLAPTA 362
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TLG YPF + DPF+++SCPHVYFAGNQ KF++++L+G D Q LV +PKFS+T V
Sbjct: 363 PDTLGSYPFHESDPFILKSCPHVYFAGNQAKFQSKVLEGDDGQRALLVTVPKFSQTQSCV 422
Query: 421 VVNLKNLECHTL 432
+VNL+ L+C L
Sbjct: 423 LVNLRTLQCEVL 434
>gi|346471337|gb|AEO35513.1| hypothetical protein [Amblyomma maculatum]
Length = 444
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 192/449 (42%), Positives = 275/449 (61%), Gaps = 26/449 (5%)
Query: 1 MEIDGE--EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-N 57
M ++G+ E + R + + + E F + + T+ +QY+ Y AR + MR++L
Sbjct: 3 MAVEGKLTEVKYTRPECAFCDMSERFTLPERTF-SRQYASFYCARYNAMRSILEGRAKEK 61
Query: 58 W-KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD 116
W K PI ++ EL E + +++GTL+K M+L+PSIL E S+E P + +F D
Sbjct: 62 WGKLKAPITSLCELVEDKRSIVVGTLFKIMELQPSILKEISEEHHVAPQPQRSHFTDNAD 121
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
LVLED+ R+ L G + A+VTG+ VA+ G+ + G F V + A L Q + PL
Sbjct: 122 SLVLEDDKQRLALAG-NIDVHAHVTGVPVAVLGQVGTDGRFTVEEFCYADLPEQIQRPLL 180
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
D +V+LVSG+ + + L FQLL+D+++G LG + +Q A+ IV VV+AGNS+
Sbjct: 181 KA-DLFVLLVSGIGLTEKADSLLPFQLLIDYVSGFLGCDDDQEKASHIVRVVLAGNSLR- 238
Query: 237 PRGLLNGQNLASKDQSRL-FEPIKE----------LDILLTQIAAGVPLDIMPGPNDPAN 285
Q +SKD +R F KE LD LL Q++ V +D+MPG +DP
Sbjct: 239 -------QKGSSKDMARAKFTVRKESSADGSVARLLDGLLEQLSHSVEVDVMPGLSDPVG 291
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE 345
LPQQPL+ CLFPG++ R TNP+ FELD +RFLGTSGQ + D+Q+YS+ LE
Sbjct: 292 TLLPQQPLHPCLFPGASQRAALRCVTNPYQFELDGMRFLGTSGQNVTDIQRYSQLTCPLE 351
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLV 405
ME+TL+WRHLAPT P+TL CYPFTD+DPF+++SCPHVYF GNQ+KF T+L KG Q V
Sbjct: 352 IMEKTLQWRHLAPTCPDTLSCYPFTDQDPFILDSCPHVYFVGNQKKFATKLFKGERGQTV 411
Query: 406 RLVCIPKFSETGVAVVVNLKNLECHTLSF 434
RLV +P F +T V++N++ LEC + F
Sbjct: 412 RLVAVPSFCKTFTCVLLNMRTLECDPMIF 440
>gi|390343504|ref|XP_782368.2| PREDICTED: DNA polymerase delta subunit 2-like [Strongylocentrotus
purpuratus]
Length = 445
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 182/444 (40%), Positives = 273/444 (61%), Gaps = 9/444 (2%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWK 59
M G+E QR Y L F++Q Y+ +QY+ +Y RL MR L + W
Sbjct: 4 MPSSGQET-FQRLSCDYENLSSRFKLQDRNYQ-RQYAHLYSERLISMRPGLEKAARRKWG 61
Query: 60 PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLV 119
P+C + +L G + +++GTL+K M+LKPSIL E S++R+ TP F D LV
Sbjct: 62 EDAPLCHLYQLVSGEKQIVVGTLFKSMELKPSILKEISEDRNLTPQPVRERFFSDSDFLV 121
Query: 120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE 179
LEDE RV L G + +A +TG V+A+ G E G+F V D L +E P +
Sbjct: 122 LEDELQRVVLTGNIDVQTA-ITGTVIAVKGFENDNGKFEVEDSCYVDLPSIEEFP-PLDD 179
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP-- 237
D+Y++L+SGL +GS ++ + QL+VD ITG LG +Q + +++V V+IAGNS+
Sbjct: 180 DRYIILMSGLGIGSDQTDLMNLQLMVDIITGQLGTADQQKMFSKVVRVIIAGNSLSESTQ 239
Query: 238 -RGLLN-GQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
+G+L + L K Q+ E +K LD +L Q+ + +P+D+M G DPAN SLPQQP +R
Sbjct: 240 DKGVLTTAKYLTRKSQAGTVEGVKTLDHILVQLTSCIPVDLMAGDFDPANSSLPQQPFHR 299
Query: 296 CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRH 355
C+FP S+ Y+TF S TNP+ ++ +R LG+SGQ + D+ +++ D+L +E+TL++ H
Sbjct: 300 CMFPQSSVYSTFNSVTNPYEAKIAGIRVLGSSGQNVTDIYQFTTMEDRLSILEQTLKYGH 359
Query: 356 LAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE 415
+AP+AP+TL CYPF D+DPF+++ CP +YFAGNQ +F+T+ L GS Q V LV +P F E
Sbjct: 360 IAPSAPDTLACYPFYDQDPFIIKECPAIYFAGNQPRFQTKKLTGSCDQEVLLVTVPSFQE 419
Query: 416 TGVAVVVNLKNLECHTLSFGTQFS 439
T V++NL+ ++C L F S
Sbjct: 420 TKSCVIINLRTMDCQPLIFSANLS 443
>gi|432874732|ref|XP_004072565.1| PREDICTED: DNA polymerase delta subunit 2-like [Oryzias latipes]
Length = 471
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 198/436 (45%), Positives = 269/436 (61%), Gaps = 15/436 (3%)
Query: 16 TYIFLDEPFEIQKETYR------GQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVL 68
T+ + P+E+ + YR +QY+ IY ARL MR LL W ++ I +
Sbjct: 26 TFERISLPYELYSDRYRVGQRSFSRQYAHIYAARLMQMRPLLAERAQQKWGSNVLIKKLC 85
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
+LE G +C I+GTL+K M+L+PSIL E S+E + P ++ D L+LEDE R+K
Sbjct: 86 DLEPGEQCCIVGTLFKRMELQPSILKEISEEHNLLPQPARAKYISEADELILEDELQRIK 145
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L G + VTG VVA++G E + G+F V D A L Q P S D++V+L SG
Sbjct: 146 LEG-KFDKDKCVTGSVVAIYGAEKNDGKFTVEDFCMADLPLQTPRPALSS-DRFVLLASG 203
Query: 189 LNVGSGTSNP-LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNG 243
L +G ++ L QLLVD +TG LGD EQ AA I V++AGN + +
Sbjct: 204 LGLGGHNADSMLGLQLLVDMVTGQLGDTGEQSGAAAISRVLLAGNLLSQNTQDKDASTKA 263
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+ L K Q+ E I+ LD LL Q+ A VP+D+MPG DP N++LPQQPL+ C+FP S+
Sbjct: 264 KYLTKKTQAGSVEAIRVLDELLLQLVASVPVDVMPGQYDPTNYTLPQQPLHPCMFPLSSA 323
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
YNT + +NP +D VRFLGTSGQ + D+Q+YS + LE +E TL+ RHLAPTAP+T
Sbjct: 324 YNTLQLVSNPFEASIDGVRFLGTSGQNVCDIQRYSSMDSHLEILEETLQLRHLAPTAPDT 383
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
LGCYPF +DPF++E CPHVYF+GN FE++L+KG D Q V LV IP+FS T A +VN
Sbjct: 384 LGCYPFYQKDPFILEECPHVYFSGNAPTFESKLIKGPDGQEVLLVTIPEFSSTQTACLVN 443
Query: 424 LKNLECHTLSFGTQFS 439
L+ L+C +SF T FS
Sbjct: 444 LRTLQCEPISF-TAFS 458
>gi|405975321|gb|EKC39895.1| DNA polymerase delta subunit 2 [Crassostrea gigas]
Length = 462
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/432 (41%), Positives = 266/432 (61%), Gaps = 10/432 (2%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHLPICTVLE 69
+R+ + + F ++ +T+ +QY+ +Y RL +R + S W + I + E
Sbjct: 25 ERQSGNFSDCSDRFLLKDKTF-SRQYAHLYAERLWEVRPKVEASARKKWGKDIVIRKLHE 83
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
L+ CV+IGTL+KHM+LKPSIL E S+E + P ++ D L LEDE R+ L
Sbjct: 84 LKSDETCVVIGTLFKHMELKPSILQEISEEHNLMPQPVRTKYVDESDKLYLEDELQRIIL 143
Query: 130 GGAELLPSAYVTGIVVALHGKE--TSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
G +L VTG+++A++GKE G+F V L+ Q P+ +DKY+VL+S
Sbjct: 144 MG-DLDVQTSVTGVIIAVYGKEPEDDQGKFHVEKYCFQMLSDQVPRPVIQ-KDKYLVLIS 201
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI----EIPRGLLNG 243
GL +GS QL VD +TG LG+ +EQ AEI V++AGNS+ + L
Sbjct: 202 GLEIGSNEEQIFSLQLFVDMVTGMLGNSEEQSHCAEICRVIVAGNSLSSSTQDKDSLQKA 261
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+ L+ K + + +K LD + TQ+A+ V +D+MPG DPAN++LPQQPL++C+FP ++
Sbjct: 262 KYLSKKTAAGSVDAVKTLDDVFTQLASSVDVDLMPGEYDPANYTLPQQPLHKCMFPEASR 321
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
Y TF + TNP+ F+++ VRFLGTSGQ + D+ KYS + L+ +E+TL W HLAPTAP+T
Sbjct: 322 YPTFHTVTNPYDFKVEGVRFLGTSGQAVQDIVKYSTNEEPLDILEKTLEWGHLAPTAPDT 381
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
LGCYPF DPF++ CPHV FAGN KF++++ KG Q V LV +P+FS+T AV+VN
Sbjct: 382 LGCYPFYKEDPFIINDCPHVLFAGNMTKFDSKVFKGCGGQEVLLVSVPRFSQTSTAVMVN 441
Query: 424 LKNLECHTLSFG 435
L+ +C + F
Sbjct: 442 LRTQDCVPMQFA 453
>gi|303282229|ref|XP_003060406.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457877|gb|EEH55175.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 466
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 186/450 (41%), Positives = 267/450 (59%), Gaps = 32/450 (7%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELE 71
R Y+ D F + + Y QY Q+YF RL ++ L V P+LP VL+L+
Sbjct: 17 RATLPYVARDSKFNLDAKIY--GQYFQLYFNRLKILAPRLEDAVQAKWPNLPRAKVLDLK 74
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLV------KPHNFMHPDDHLVLEDESG 125
EG ECV+ GTLYK MKLKP ILDEY KE + K F+ DD +VLEDE
Sbjct: 75 EGEECVLSGTLYKDMKLKPCILDEYVKEAGVSASAVAIEDSKKTKFVGEDDSIVLEDEGA 134
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG------- 178
RVKL GA + +A VTG+V+A G+ GEF ++ A + +
Sbjct: 135 RVKLTGAAIDVNALVTGVVLAARGRVVPGGEFEADEICFPRPAAARRSAAPADASTAAAA 194
Query: 179 --EDKYVVLVSGLNVGS-GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
+ K VVLVS L VG +SNPL +L++D +TG+LG + AA + VV+ G ++
Sbjct: 195 DLKGKRVVLVSDLRVGDPASSNPLNLELMLDFLTGNLGGAADASEAASVARVVVCGGALS 254
Query: 236 IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
+ + +L ++++++ P++ELD+LL+Q+ + V +D+MPG DP N +LPQQPL+
Sbjct: 255 --KAEVPASSLDPREKAQISRPLRELDVLLSQLCSSVHVDVMPGEGDPTNQALPQQPLHP 312
Query: 296 CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRH 355
CLFP +A Y+TF + TNPH F++ V FLGTSGQ I DL KY+ N++L+ ME +LRW+H
Sbjct: 313 CLFPSAARYDTFAASTNPHEFDVGGVGFLGTSGQNISDLCKYT--NERLDLMESSLRWQH 370
Query: 356 LAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRL-------- 407
LAP+AP+TL CYP+ DRDPF +++CP VYFAG Q F +R+++ R
Sbjct: 371 LAPSAPDTLACYPYKDRDPFHLDACPDVYFAGCQPAFGSRVVELERRGAGAGAGGETTRT 430
Query: 408 --VCIPKFSETGVAVVVNLKNLECHTLSFG 435
V +P F+ TG V+V+L+ L C ++FG
Sbjct: 431 LAVSVPSFAATGTIVMVDLETLTCTPVTFG 460
>gi|449488069|ref|XP_002196136.2| PREDICTED: DNA polymerase delta subunit 2 [Taeniopygia guttata]
Length = 468
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 188/427 (44%), Positives = 260/427 (60%), Gaps = 11/427 (2%)
Query: 17 YIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHLPICTVLELEEGRE 75
Y +PF++ + ++ +QY+ IY RL MR L W + + + EL+EG +
Sbjct: 32 YSDCSQPFQLGERSF-ARQYAHIYAVRLAGMRPGLERRARSRWGNDVVLRRLSELQEGEK 90
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL 135
C ++GTL+K M+L+PSIL E S+E + P ++ P D L+LEDE R+KL GA +
Sbjct: 91 CCVVGTLFKSMQLQPSILQEISEEHNLVPQPPLPKYIQPSDELILEDELQRIKLEGA-ID 149
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS-GEDKYVVLVSGLNVGSG 194
VTG +VA++G E G FLV D A L P LP + D+YV+L SGL +GS
Sbjct: 150 VQRLVTGTIVAVYGCEQDNGRFLVEDHCFADLPP--ALPWSGPSSDRYVLLASGLGLGSV 207
Query: 195 TSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLASK 249
+ L QLLVD +TG LG E EQ AA I V++AGN + R +N + L K
Sbjct: 208 SGEALLSTQLLVDVVTGQLGAEGEQSCAAHITRVILAGNLLSQNTQSRDTINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q+ VP+D+MPG DP N++LPQQPL+RC+ P ++ Y T R
Sbjct: 268 TQAASVEAVKMLDEILLQLCTSVPVDVMPGEFDPTNYTLPQQPLHRCMLPLASAYATLRL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ LD VRFLGTSGQ I D+ KYS +D LE +E TL H++PTAP+TLGCYPF
Sbjct: 328 VTNPYQASLDGVRFLGTSGQNISDIFKYSSMDDYLEILEWTLLAGHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF++ CPHVYF GN F+++LL+G + Q V L+ +P FS T A +VNL +L C
Sbjct: 388 YKSDPFILTECPHVYFCGNAPHFQSKLLQGKEGQRVLLLTVPDFSATQTACLVNLHDLSC 447
Query: 430 HTLSFGT 436
++F +
Sbjct: 448 QPITFSS 454
>gi|431909930|gb|ELK13026.1| DNA polymerase delta subunit 2 [Pteropus alecto]
Length = 469
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 260/426 (61%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ QQY+ IY ARL MR L S +W +PI + EL+ G
Sbjct: 30 ATYTNCSQPFRLGERSF-SQQYAHIYTARLVQMRPFLASRAQQHWGSGVPIKKLFELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E P ++HPDD LVLEDE R++L G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHCLLPQPPRSKYIHPDDELVLEDELQRIRLEGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+F V D A LAPQ PL + +++ G
Sbjct: 148 IDVSKLVTGTVLAVLGSVRDDGKFAVEDRCFAELAPQMPAPLLDQDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA++ V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAQVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGT+GQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTAGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF++ CPHVYF G+ F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFILLECPHVYFCGSAPHFGSKVIRGPEGQTVLLVAVPDFSATQTACLVNLRHLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|226423863|ref|NP_032920.2| DNA polymerase delta subunit 2 [Mus musculus]
gi|341940459|sp|O35654.2|DPOD2_MOUSE RecName: Full=DNA polymerase delta subunit 2; AltName: Full=DNA
polymerase delta subunit p50
gi|13097135|gb|AAH03342.1| Polymerase (DNA directed), delta 2, regulatory subunit [Mus
musculus]
gi|148708616|gb|EDL40563.1| polymerase (DNA directed), delta 2, regulatory subunit, isoform
CRA_a [Mus musculus]
Length = 469
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 259/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G F V D A LAPQK +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFA 453
>gi|395506992|ref|XP_003757812.1| PREDICTED: DNA polymerase delta subunit 2 [Sarcophilus harrisii]
Length = 537
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/425 (42%), Positives = 258/425 (60%), Gaps = 7/425 (1%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARL-HLMRALLYSLVPNWKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL H+ L+ W + + + EL+ G
Sbjct: 97 TYTNSSQPFRLGERSF-SRQYAHIYATRLIHMTPLLVNRARQRWSSEVSVKKLCELQPGE 155
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M+L+PSIL E S+E + P ++HPDD L+LEDE R++L G +
Sbjct: 156 KCCVVGTLFKSMQLQPSILREISEEHNLLPQPPRSKYIHPDDELILEDELQRIRLEGT-I 214
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
S VTGIV+A+ G G+FLV D A L PQK + + + +++ G
Sbjct: 215 DVSRLVTGIVLAVLGSVQDDGKFLVEDHCFADLPPQKPMTVPEADRFVLLVSGLGLGGCS 274
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASKD 250
+ L QL+VD +TG LGDE EQ AA I V++AGN + + + + L K
Sbjct: 275 GESLLGTQLMVDVVTGQLGDEGEQNSAAHISRVILAGNLLSQNTQSRDSISKAKYLTKKT 334
Query: 251 QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
Q+ E IK LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP ++ Y+T +
Sbjct: 335 QAASVEAIKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLASAYSTLQLV 394
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR H++PTAP+TLGCYPF
Sbjct: 395 TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVGHISPTAPDTLGCYPFY 454
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECH 430
DPF+ CPHVYF GN KF +++++G + Q V LV +P FS T A +VNL+NL C
Sbjct: 455 KTDPFIFPECPHVYFCGNTPKFCSKIIRGPEEQTVLLVAVPNFSTTQTACLVNLRNLACQ 514
Query: 431 TLSFG 435
+SF
Sbjct: 515 PISFS 519
>gi|332239430|ref|XP_003268906.1| PREDICTED: DNA polymerase delta subunit 2 isoform 2 [Nomascus
leucogenys]
gi|441650322|ref|XP_004091010.1| PREDICTED: DNA polymerase delta subunit 2 [Nomascus leucogenys]
Length = 469
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 258/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL+NL C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRNLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|126303407|ref|XP_001379694.1| PREDICTED: DNA polymerase delta subunit 2-like [Monodelphis
domestica]
Length = 471
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/426 (42%), Positives = 256/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARL-HLMRALLYSLVPNWKPHLPICTVLELEEG 73
TY +PF + + ++ +QY+ IY RL H+ L+ W + + + EL+ G
Sbjct: 30 TTYTNSSQPFRLGERSF-SRQYAHIYATRLIHMTPLLVKRARQRWSSEVSVRKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M+L+PSIL E S+E + P ++HPDD L+LEDE R+KL G
Sbjct: 89 EKCCVVGTLFKSMQLQPSILREISEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTGIV+A+ G G+FLV D A L PQK + + + +++ G
Sbjct: 148 IDVSKLVTGIVLAVLGSVQDDGKFLVEDHCFADLPPQKPMTVPDADRFVLLVSGLGLGGC 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
+ L QL+VD +TG LGDE EQ AA I V++AGN + + + + L K
Sbjct: 208 SGESLLGTQLMVDVVTGQLGDEGEQSSAAHISRVILAGNLLSQNTQSRDSISKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E IK LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAIKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR H++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVGHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL+NL C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPNFRSKIIRGPEEQTVLLVAVPNFSTTQTACLVNLRNLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|348560136|ref|XP_003465870.1| PREDICTED: DNA polymerase delta subunit 2-like [Cavia porcellus]
Length = 469
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 186/426 (43%), Positives = 258/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S W +P+ + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQQWGSGVPLKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL GA
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGA- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A L PQ+ P + +++ G
Sbjct: 148 IDVSRLVTGTVLAVCGFVQDDGKFLVEDHCFADLGPQEPAPCLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAACVSRVILAGNLLSPSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+ P + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMLPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +R+++G + Q+V LV IP FS T A +VNL++L C
Sbjct: 388 YKTDPFICLECPHVYFCGNTPSFGSRVIRGPEDQMVLLVAIPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFA 453
>gi|195998648|ref|XP_002109192.1| hypothetical protein TRIADDRAFT_52972 [Trichoplax adhaerens]
gi|190587316|gb|EDV27358.1| hypothetical protein TRIADDRAFT_52972 [Trichoplax adhaerens]
Length = 448
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/408 (42%), Positives = 251/408 (61%), Gaps = 10/408 (2%)
Query: 35 QYSQIYFARLHLMR-ALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
QY IY +RL MR +LL + W + C ++EL+ G IIGTL+K M +P+IL
Sbjct: 37 QYCNIYTSRLVAMRDSLLQAAKRAWGNDINYCKLMELKTGITSCIIGTLFKRMSARPNIL 96
Query: 94 DEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETS 153
E S E + PL + D LV EDE+ R+ L G + + VTG++VAL GKE
Sbjct: 97 QEISDEYNLIPLPPRTKYADDSDELVAEDETQRISLTG-NINVTKSVTGVIVALLGKELD 155
Query: 154 AGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG 213
G+F V +++ AGL Q P DKY+ +VSGLN+GS L QL +D ITG L
Sbjct: 156 GGKFYVNEMVSAGLPKQIPRPF-IHNDKYICIVSGLNLGSSHQGFLTMQLFIDFITGRLT 214
Query: 214 D-EKEQGIAAEIVHVVIAGNSIEIPRGLL------NGQNLASKDQSRLFEPIKELDILLT 266
+ ++++ + ++IV +VIAGNS N + +S+ + E IK LD +LT
Sbjct: 215 EGQEDRKMCSQIVQIVIAGNSAAQQNSSTSETNKANSKKFSSRSSANTLEGIKALDEILT 274
Query: 267 QIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGT 326
Q+ + +P+DIMPG DP+N +PQQPL+ C+FP +++ +S TNP+ F +D VRFLGT
Sbjct: 275 QLCSCIPVDIMPGEFDPSNHIMPQQPLHPCMFPKGFQFSSLKSVTNPYEFSVDGVRFLGT 334
Query: 327 SGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
SGQ IDD+ +YS D+LE E+ LRW H++PTAP+TL CYP+ ++DPF++ESCPHVYF
Sbjct: 335 SGQNIDDIYRYSYFEDRLEICEQCLRWGHISPTAPDTLACYPYYEKDPFILESCPHVYFV 394
Query: 387 GNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
GNQ +F + + G Q V LV +P F++ V+VN + L+C +SF
Sbjct: 395 GNQPEFSCKKITGDQEQEVLLVNVPSFNQKHSCVLVNTRTLDCKPISF 442
>gi|2398725|emb|CAA96567.1| DNA polymerase delta small subunit [Mus musculus]
Length = 469
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 259/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVTRAQQHWGSRVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G F V D A LAPQK +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFA 453
>gi|397467135|ref|XP_003805282.1| PREDICTED: DNA polymerase delta subunit 2 isoform 1 [Pan paniscus]
Length = 504
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 258/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 65 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 123
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 124 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 182
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK PL + +++ G
Sbjct: 183 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPLLDTDRFVLLVSGLGLGGG 242
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 243 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 302
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 303 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 362
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 363 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 422
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 423 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 482
Query: 430 HTLSFG 435
+SF
Sbjct: 483 QPISFS 488
>gi|397467137|ref|XP_003805283.1| PREDICTED: DNA polymerase delta subunit 2 isoform 2 [Pan paniscus]
Length = 469
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 258/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK PL + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPLLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|344252518|gb|EGW08622.1| DNA polymerase delta subunit 2 [Cricetulus griseus]
Length = 487
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 259/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 48 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLESRAQQHWGSGVGVKKLCELQPG 106
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 107 EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT- 165
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G F V D A LAPQK +P + +++ G
Sbjct: 166 IDVSKLVTGTVLAVFGSVRDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGG 225
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 226 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 285
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 286 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 345
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 346 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 405
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L C
Sbjct: 406 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLAC 465
Query: 430 HTLSFG 435
+SF
Sbjct: 466 QPISFS 471
>gi|218505643|ref|NP_001136183.1| DNA polymerase subunit delta-2 [Salmo salar]
gi|209155382|gb|ACI33923.1| DNA polymerase subunit delta-2 [Salmo salar]
gi|223648556|gb|ACN11036.1| DNA polymerase subunit delta-2 [Salmo salar]
Length = 474
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 183/438 (41%), Positives = 261/438 (59%), Gaps = 7/438 (1%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHL 62
D E + R + Y E F++ + ++ +QY+ IY RL M LL W +
Sbjct: 24 DQEPSVFDRVKPAYSPCSERFKLGERSF-NRQYAHIYATRLMQMSPLLTERAQQKWGADV 82
Query: 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED 122
I + +L+ G +C I+GTL+KHM+L+PSIL E S+E + P ++ D L+LED
Sbjct: 83 RIRKLCDLQMGEQCCIVGTLFKHMELQPSILKEISEEHNLLPQPPRTRYISDSDELILED 142
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY 182
E R+KL G + +VTG V+A++G E + G+F V D A L PQ S +
Sbjct: 143 ELQRIKLEG-NIDVDKFVTGSVIAIYGAEKNDGKFTVDDFCTADLPPQTPRTTLSSDRFV 201
Query: 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPR 238
++L GS + L QLLVD +TGHLGD+ EQ A+ I V++AGN S +
Sbjct: 202 LLLSGLGLGGSHADSMLALQLLVDMVTGHLGDQGEQSGASTISRVLLAGNLLSQSTQDKD 261
Query: 239 GLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
+ L K Q+ + ++ LD +L Q+ + VP+D+MPG DP N++LPQQPL+ C+F
Sbjct: 262 ASTKAKYLTKKTQAGTVDAMRLLDEMLMQLVSSVPVDVMPGQYDPTNYTLPQQPLHHCMF 321
Query: 299 PGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAP 358
P S+TY T +NPH LD VR LGTSGQ + D+QKYS + LE +E TLR RHLAP
Sbjct: 322 PLSSTYPTLLLASNPHQATLDGVRILGTSGQNVKDIQKYSSMDSHLEILENTLRLRHLAP 381
Query: 359 TAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGV 418
TAP+TLGCYPF +DPF++E CPHVYF+GN ++ + + G++ Q V LV IP+FS T
Sbjct: 382 TAPDTLGCYPFYLKDPFILEECPHVYFSGNAPSYQAKRITGAEGQEVLLVAIPEFSSTQT 441
Query: 419 AVVVNLKNLECHTLSFGT 436
A ++NL+ LEC + F +
Sbjct: 442 ACLINLRTLECEPIRFSS 459
>gi|291394901|ref|XP_002713893.1| PREDICTED: DNA-directed DNA polymerase delta 2 [Oryctolagus
cuniculus]
Length = 469
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 254/426 (59%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLELEEG 73
ATY +PF + + + +QY+ IY RL MR L S W + + EL+ G
Sbjct: 30 ATYTNASQPFRLGERNF-NRQYAHIYATRLSQMRPFLVSRARQRWGSGTEVKKLCELQSG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYVHPDDQLVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVLGSVKDDGKFLVEDHCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D L +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLAILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKVIRGPEDQTVLLVAVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 EPISFA 453
>gi|194209519|ref|XP_001915605.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase delta subunit 2-like
[Equus caballus]
Length = 469
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 187/425 (44%), Positives = 259/425 (60%), Gaps = 7/425 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEG 73
ATY +PF + + ++ G+QY+ IY RL MR L S W + I + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-GRQYAHIYATRLIQMRPFLVSRAQQRWGSGVQIKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+F V D A LAPQK PL + +++ G
Sbjct: 148 IDVSKLVTGTVLAVLGSVRDDGKFQVEDHCFAELAPQKPAPLLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSGMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFVFPECPHVYFCGNTPSFGSKIIRGLEDQTVLLVAVPDFSTTQTACLVNLRSLAC 447
Query: 430 HTLSF 434
+SF
Sbjct: 448 QPISF 452
>gi|351706194|gb|EHB09113.1| DNA polymerase delta subunit 2 [Heterocephalus glaber]
Length = 469
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 192/427 (44%), Positives = 268/427 (62%), Gaps = 11/427 (2%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSQARQHWGSGVGVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTI 148
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYVVLVSGLNVG 192
+ S VTG V+A+ G G+FLV D A LAPQK PL++ D++V+LVSGL +G
Sbjct: 149 DI-SKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAAPLDT--DRFVLLVSGLGLG 205
Query: 193 SGTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLA 247
G L QLLVD +TG LGDE EQ AA + V++AGN S + + + L
Sbjct: 206 GGGGESLLGTQLLVDVVTGQLGDEGEQCSAARVSRVILAGNLLSPSTQSRDSINKAKYLT 265
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
K Q+ E ++ LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+ P + Y+T
Sbjct: 266 KKTQAASVEAVRMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMLPLATAYSTL 325
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCY
Sbjct: 326 QLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCY 385
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
PF DPF+ CPHVYF GN F +++++GS+ Q+V LV +P FS T A +VNL++L
Sbjct: 386 PFYKTDPFICLECPHVYFCGNTPSFGSKIIRGSEDQMVLLVAVPDFSTTQTACLVNLRSL 445
Query: 428 ECHTLSF 434
C +SF
Sbjct: 446 ACQPISF 452
>gi|354485255|ref|XP_003504799.1| PREDICTED: DNA polymerase delta subunit 2-like [Cricetulus griseus]
Length = 469
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 259/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLESRAQQHWGSGVGVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G F V D A LAPQK +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|74010360|ref|XP_539802.2| PREDICTED: DNA polymerase delta subunit 2 [Canis lupus familiaris]
Length = 469
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 260/426 (61%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
+TY + F + + ++ +QY+ IY RL MR L S +W + I + EL+ G
Sbjct: 30 STYTNSSQSFRLGERSF-SRQYAHIYATRLLQMRPFLVSRAQQHWGDGIQIKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G+
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDQLVLEDELQRIKLEGS- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G +G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDASKLVTGTVLAVLGSVRDSGKFLVEDHCFAELAPQKPAPTLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRIRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN +F +++ +G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKNDPFIFPDCPHVYFCGNTPQFGSKIFRGPEDQRVLLVAVPDFSTTQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|301777308|ref|XP_002924069.1| PREDICTED: DNA polymerase delta subunit 2-like [Ailuropoda
melanoleuca]
gi|281340684|gb|EFB16268.1| hypothetical protein PANDA_013317 [Ailuropoda melanoleuca]
Length = 469
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 261/426 (61%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
+TY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 STYTNSSQPFRLGERSF-SRQYAHIYATRLLQMRPFLVSRAKQHWGGGVQVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G+
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLEGS- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G +G+FLV D A LAPQ+ P + +++ G
Sbjct: 148 IDSSKLVTGTVLAVLGSARDSGKFLVEDHCFAELAPQQPAPTLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN +F +++ +G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFLECPHVYFCGNTPEFGSKIFRGPEDQRVLLVAVPDFSTTQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|443695395|gb|ELT96314.1| hypothetical protein CAPTEDRAFT_168965 [Capitella teleta]
Length = 469
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 181/442 (40%), Positives = 265/442 (59%), Gaps = 11/442 (2%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLP 63
E R +A Y L F ++ T++ +QY+ IY ARL R L + W P
Sbjct: 19 NEPETFNRLEADYENLSRKFLTKERTFQ-RQYAHIYAARLWTQRPGLEKVAKEKWGDSAP 77
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
I + +L+ G CV+IGTL+KHM LKPSIL E S++ S PL + D L+LEDE
Sbjct: 78 IRKLCDLQTGETCVVIGTLFKHMDLKPSILKEISEDHSLMPLPPRAKYTDESDSLILEDE 137
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKE--TSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
R+ L G ++ A VTG +VA++G+E + G+F V + L Q E PL SG DK
Sbjct: 138 LQRIVLQG-DIDVQALVTGALVAVYGEEPDDNRGKFNVKEFSFPPLPCQPERPL-SGNDK 195
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI----EIP 237
Y+VL SGL++G+ + L QL+ D +TG LGD +Q A + +++AGNS+ +
Sbjct: 196 YIVLTSGLDIGAKNEDLLSLQLMADLLTGQLGDPHQQSTLASVSRIILAGNSLSENTQDK 255
Query: 238 RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
+ + L K + + IK LD LL Q+A+ + +D+MPG +DPAN SLPQQPL+RC+
Sbjct: 256 ENISKAKYLTKKTMAGSVDAIKSLDSLLVQLASCMEVDLMPGEHDPANSSLPQQPLHRCM 315
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
FP S + T +NP+ ++D GTSGQ I D+ K+S D L+ +E TL+ HLA
Sbjct: 316 FPESLRFPTMHCVSNPYSCKVDGCLITGTSGQPIHDIYKFSSMEDHLQILETTLKCTHLA 375
Query: 358 PTAPNTLGCYPFTDRDPFLV-ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
PTAP+TL CYP++D DP ++ + CP V+FA N KF+ ++ +G + Q V L+C+P+FSET
Sbjct: 376 PTAPDTLACYPYSDMDPLVISDDCPDVFFASNMPKFQHKIFEGPEGQRVLLLCVPRFSET 435
Query: 417 GVAVVVNLKNLECHTLSFGTQF 438
V+VN + L+C +++F T F
Sbjct: 436 QTCVLVNTRTLDCESIAFATSF 457
>gi|61556801|ref|NP_001013068.1| DNA polymerase delta subunit 2 [Rattus norvegicus]
gi|81884493|sp|Q6AXY4.1|DPOD2_RAT RecName: Full=DNA polymerase delta subunit 2; AltName: Full=DNA
polymerase delta subunit p50
gi|50926203|gb|AAH79267.1| Polymerase (DNA directed), delta 2, regulatory subunit [Rattus
norvegicus]
gi|149047646|gb|EDM00316.1| polymerase (DNA directed), delta 2, regulatory subunit, isoform
CRA_a [Rattus norvegicus]
Length = 469
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 256/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+F V D A LAPQ +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL+ L C
Sbjct: 388 YKTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFA 453
>gi|189055337|dbj|BAG35221.1| unnamed protein product [Homo sapiens]
Length = 469
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQATSVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|379056381|ref|NP_006221.2| DNA polymerase delta subunit 2 isoform 2 [Homo sapiens]
Length = 504
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 65 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 123
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 124 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 182
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 183 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 242
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 243 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 302
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 303 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 362
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 363 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 422
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 423 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 482
Query: 430 HTLSFG 435
+SF
Sbjct: 483 QPISFS 488
>gi|187828568|ref|NP_001120690.1| DNA polymerase delta subunit 2 isoform 1 [Homo sapiens]
gi|379056383|ref|NP_001243808.1| DNA polymerase delta subunit 2 isoform 1 [Homo sapiens]
gi|1352307|sp|P49005.1|DPOD2_HUMAN RecName: Full=DNA polymerase delta subunit 2; AltName: Full=DNA
polymerase delta subunit p50
gi|1008458|gb|AAC50216.1| DNA polymerase delta small subunit [Homo sapiens]
gi|9963918|gb|AAG09763.1| DNA polymerase delta small subunit [Homo sapiens]
gi|12653379|gb|AAH00459.1| Polymerase (DNA directed), delta 2, regulatory subunit 50kDa [Homo
sapiens]
gi|21430983|gb|AAM51148.1| polymerase (DNA directed), delta 2, regulatory subunit (50kD) [Homo
sapiens]
gi|51094511|gb|EAL23767.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa [Homo
sapiens]
gi|119581522|gb|EAW61118.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa [Homo
sapiens]
gi|123982305|gb|ABM82925.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa
[synthetic construct]
gi|123997027|gb|ABM86115.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa
[synthetic construct]
gi|158258126|dbj|BAF85036.1| unnamed protein product [Homo sapiens]
gi|208965368|dbj|BAG72698.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa
[synthetic construct]
Length = 469
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|218681781|pdb|3E0J|A Chain A, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
gi|218681783|pdb|3E0J|C Chain C, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
gi|218681785|pdb|3E0J|E Chain E, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
gi|218681787|pdb|3E0J|G Chain G, X-Ray Structure Of The Complex Of Regulatory Subunits Of
Human Dna Polymerase Delta
Length = 476
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 37 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 95
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 96 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 154
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 155 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 214
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 215 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 274
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 275 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 334
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 335 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 394
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 395 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 454
Query: 430 HTLSFG 435
+SF
Sbjct: 455 QPISFS 460
>gi|350535889|ref|NP_001233397.1| DNA polymerase delta subunit 2 [Pan troglodytes]
gi|343958416|dbj|BAK63063.1| DNA polymerase subunit delta 2 [Pan troglodytes]
Length = 469
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|402863614|ref|XP_003896102.1| PREDICTED: DNA polymerase delta subunit 2 isoform 1 [Papio anubis]
Length = 504
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 183/424 (43%), Positives = 257/424 (60%), Gaps = 7/424 (1%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+ G
Sbjct: 66 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPGE 124
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G +
Sbjct: 125 KCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT-I 183
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
S VTG V+A+ G G+FLV D A LAPQK P + +++ G G
Sbjct: 184 DVSKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGG 243
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASKD 250
+ L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 244 GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKT 303
Query: 251 QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 304 QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLV 363
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 364 TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFY 423
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECH 430
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 424 KTDPFIFLECPHVYFCGNTPSFGSKIIQGPEDQTVLLVTVPDFSATQTACLVNLRSLACQ 483
Query: 431 TLSF 434
+SF
Sbjct: 484 PISF 487
>gi|297680544|ref|XP_002818049.1| PREDICTED: DNA polymerase delta subunit 2 isoform 4 [Pongo abelii]
Length = 469
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|426356079|ref|XP_004045419.1| PREDICTED: DNA polymerase delta subunit 2 isoform 2 [Gorilla
gorilla gorilla]
Length = 469
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASAEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|403278466|ref|XP_003930826.1| PREDICTED: DNA polymerase delta subunit 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403278468|ref|XP_003930827.1| PREDICTED: DNA polymerase delta subunit 2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 469
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLENRAQERWGSGVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF G+ F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFAECPHVYFCGSTPSFGSKIIQGPEDQKVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|297680540|ref|XP_002818047.1| PREDICTED: DNA polymerase delta subunit 2 isoform 2 [Pongo abelii]
Length = 504
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/425 (43%), Positives = 257/425 (60%), Gaps = 7/425 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 65 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 123
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 124 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 182
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 183 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 242
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 243 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 302
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 303 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 362
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 363 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 422
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 423 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 482
Query: 430 HTLSF 434
+SF
Sbjct: 483 QPISF 487
>gi|296209176|ref|XP_002751421.1| PREDICTED: DNA polymerase delta subunit 2 isoform 1 [Callithrix
jacchus]
Length = 469
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLENRAQQRWGSGVGVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPSRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAPPLDIDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF G+ F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFAECPHVYFCGSTPSFGSKVIRGPEDQKVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|402863616|ref|XP_003896103.1| PREDICTED: DNA polymerase delta subunit 2 isoform 2 [Papio anubis]
Length = 469
Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 183/425 (43%), Positives = 257/425 (60%), Gaps = 7/425 (1%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G +
Sbjct: 90 KCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
S VTG V+A+ G G+FLV D A LAPQK P + +++ G G
Sbjct: 149 DVSKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGG 208
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASKD 250
+ L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 209 GESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKT 268
Query: 251 QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 269 QAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLV 328
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 329 TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFY 388
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECH 430
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 389 KTDPFIFLECPHVYFCGNTPSFGSKIIQGPEDQTVLLVTVPDFSATQTACLVNLRSLACQ 448
Query: 431 TLSFG 435
+SF
Sbjct: 449 PISFS 453
>gi|426356077|ref|XP_004045418.1| PREDICTED: DNA polymerase delta subunit 2 isoform 1 [Gorilla
gorilla gorilla]
Length = 504
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 65 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 123
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 124 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 182
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 183 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 242
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 243 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 302
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 303 TQAASAEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 362
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 363 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 422
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 423 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 482
Query: 430 HTLSFG 435
+SF
Sbjct: 483 QPISFS 488
>gi|350529379|ref|NP_001231925.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa [Sus
scrofa]
Length = 471
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 194/426 (45%), Positives = 268/426 (62%), Gaps = 11/426 (2%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 33 TYTNSSQPFRLGERSF-NRQYAHIYATRLVQMRPFLVSRARQRWGGGVVVKKLCELQPGE 91
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL GA +
Sbjct: 92 KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGA-I 150
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVSGLNVGS 193
S VTG V+AL G G+FLV D AGLAPQK PL++ D++V+LVSGL +G
Sbjct: 151 DVSKLVTGTVLALLGSAGDDGKFLVEDHCFAGLAPQKPTRPLDT--DRFVLLVSGLGLGG 208
Query: 194 GTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLAS 248
G L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 209 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 268
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 269 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 328
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 329 LVTNPYQATIDGVRFLGTSGQNVGDIFRYSGMEDHLEILEWTLQIRHISPTAPDTLGCYP 388
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 389 FYKTDPFIFLECPHVYFCGNTPSFGSKIIRGPEDQTVLLVAVPDFSSTQTACLVNLRSLT 448
Query: 429 CHTLSF 434
C +SF
Sbjct: 449 CQPISF 454
>gi|164450483|ref|NP_776853.2| DNA polymerase delta subunit 2 [Bos taurus]
gi|109940074|sp|P49004.2|DPOD2_BOVIN RecName: Full=DNA polymerase delta subunit 2; AltName: Full=DNA
polymerase delta subunit p50
gi|88758648|gb|AAI13316.1| Polymerase (DNA directed), delta 2, regulatory subunit 50kDa [Bos
taurus]
gi|296488357|tpg|DAA30470.1| TPA: DNA polymerase delta subunit 2 [Bos taurus]
Length = 469
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 267/426 (62%), Gaps = 11/426 (2%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G +
Sbjct: 90 KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYVVLVSGLNVGS 193
S VTG V+A+ G G+FLV D AGLAPQK PL++ D++V+LVSGL +G
Sbjct: 149 DVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGG 206
Query: 194 GTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLAS 248
G L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 207 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 266
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 326
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 327 LVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYP 386
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 387 FYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLA 446
Query: 429 CHTLSF 434
C +SF
Sbjct: 447 CQPISF 452
>gi|343960915|dbj|BAK62047.1| DNA polymerase subunit delta 2 [Pan troglodytes]
Length = 469
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P F+ T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFNATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|426227871|ref|XP_004008038.1| PREDICTED: DNA polymerase delta subunit 2 [Ovis aries]
Length = 469
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 267/426 (62%), Gaps = 11/426 (2%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQCWGSGVLVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G +
Sbjct: 90 KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVSGLNVGS 193
S VTG V+A+ G G+FLV D AGLAPQK PL++ D++V+LVSGL +G
Sbjct: 149 DVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPTRPLDT--DRFVLLVSGLGLGG 206
Query: 194 GTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLAS 248
G L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 207 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 266
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 326
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 327 LVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYP 386
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 387 FYKNDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLA 446
Query: 429 CHTLSF 434
C +SF
Sbjct: 447 CQPISF 452
>gi|380798219|gb|AFE70985.1| DNA polymerase delta subunit 2, partial [Macaca mulatta]
Length = 468
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 29 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 87
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 88 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 146
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 147 IDVSKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 206
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 207 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 266
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 326
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 327 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 386
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 387 YKTDPFIFLECPHVYFCGNTPSFGSKIIQGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 446
Query: 430 HTLSFG 435
+SF
Sbjct: 447 QPISFS 452
>gi|388453065|ref|NP_001253222.1| DNA polymerase delta subunit 2 [Macaca mulatta]
gi|67970282|dbj|BAE01484.1| unnamed protein product [Macaca fascicularis]
gi|355560661|gb|EHH17347.1| DNA polymerase delta subunit 2 [Macaca mulatta]
gi|355747662|gb|EHH52159.1| DNA polymerase delta subunit 2 [Macaca fascicularis]
gi|383414205|gb|AFH30316.1| DNA polymerase delta subunit 2 [Macaca mulatta]
Length = 469
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFLECPHVYFCGNTPSFGSKIIQGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|167537048|ref|XP_001750194.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771356|gb|EDQ85024.1| predicted protein [Monosiga brevicollis MX1]
Length = 999
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/458 (40%), Positives = 267/458 (58%), Gaps = 26/458 (5%)
Query: 2 EIDGEEA--RLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFAR-LHLMRALLYSLVPNW 58
E+DG QR ATY + F + +QYS +YF+R + L ++++ W
Sbjct: 13 EVDGTMTPDLAQRASATYESHADRFRLPAHRNYDKQYSNLYFSRYMTLRKSVIARAKSKW 72
Query: 59 KPHLPIC-----TVLELE--EGRECVIIGTLYKHMKLKPSILDEY-SKERSTTPLVKPHN 110
+ P +L L G+ CV++GT+YK MKLKP+ILDE+ ++E P +
Sbjct: 73 QLDQPGAPPLADNILGLAAMRGKPCVVVGTVYKDMKLKPNILDEFNARENYEAPPPERSK 132
Query: 111 FMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ 170
+ DD ++LED++GR L GA L V+G+V+A G E GEF V + + PQ
Sbjct: 133 YFADDDVIILEDQTGRTVLSGAGLPVGELVSGVVMAAKGVENDKGEFEVNECCFCDMGPQ 192
Query: 171 --KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
+++P + +Y+ L SG N+ + N +L VD ITG LG ++Q A + V+
Sbjct: 193 AARQVPT---QQRYLCLASGFNIDAQAKNLFALELFVDLITGQLGSPEQQQQMARVARVL 249
Query: 229 IAGNSIEIPRGLLNGQNLASKDQSRLFEP-----IKELDILLTQIAAGVPLDIMPGPNDP 283
+AGN I R Q+ ++ + R EP +KELD +LTQ+ + VP+D+MPG +DP
Sbjct: 250 LAGNLI---RATTGEQDEVAQYKRRNMEPETVVHVKELDFILTQLCSTVPVDMMPGDHDP 306
Query: 284 ANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ 343
AN +PQQPL++C+FP + Y + R TNP F LD V LGTSGQ IDD+ +++E+ D+
Sbjct: 307 ANKIVPQQPLHKCMFPTATKYGSLRGVTNPTDFVLDGVHILGTSGQNIDDVYRFTESEDR 366
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTD--RDPFLVESCPHVYFAGNQQKFETRLLKGSD 401
LE +ER LRW HL PTAP+TL YP+T +DPF + CPHV+FAGNQ +F T+ G D
Sbjct: 367 LELLERILRWGHLFPTAPDTLCVYPYTTEHKDPFAIGDCPHVFFAGNQPEFATKECSGPD 426
Query: 402 RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS 439
Q VRLVC+P FS+T AV+++L LE L F +
Sbjct: 427 GQKVRLVCVPDFSKTATAVLLDLHTLEATPLCFSNMVA 464
>gi|432092626|gb|ELK25161.1| DNA polymerase delta subunit 2 [Myotis davidii]
Length = 469
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 256/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S W + + + EL+
Sbjct: 30 ATYTNCSQPFRLGERSF-SRQYAHIYATRLLQMRPFLVSRAQQQWGSGVLVRKLCELQPA 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R++L G
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIRLEGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D AGLAPQ P + +++ G
Sbjct: 148 IDVSRLVTGTVLAVLGSVRDDGKFLVEDHCFAGLAPQTPAPPLDLDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGT+GQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTAGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKSDPFIFLECPHVYFCGNTPSFGSKIIRGPEDQTVLLVAVPDFSATQTACLVNLRSLVC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|440903070|gb|ELR53777.1| DNA polymerase delta subunit 2 [Bos grunniens mutus]
Length = 469
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 267/426 (62%), Gaps = 11/426 (2%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G +
Sbjct: 90 KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYVVLVSGLNVGS 193
S VTG V+A+ G G+FLV D AGLAPQK PL++ D++V+LVSGL +G
Sbjct: 149 DVSKLVTGTVLAVLGSVGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGG 206
Query: 194 GTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLAS 248
G L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 207 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 266
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 326
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 327 LVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYP 386
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 387 FYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLA 446
Query: 429 CHTLSF 434
C +SF
Sbjct: 447 CQPISF 452
>gi|417401440|gb|JAA47606.1| Putative dna polymerase delta regulatory subunit 55 [Desmodus
rotundus]
Length = 467
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 256/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + W + + + EL+ G
Sbjct: 30 ATYTNASQPFRLGERSF-SRQYAHIYATRLIQMRPFLVTRAQQQWGAAVRVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R++L G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIRLEGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D AGLA Q P + +++ G
Sbjct: 148 IDVSKLVTGTVLAMLGAVGDDGKFLVEDHCFAGLASQTPTPPLDLDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA I V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHISRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGT+GQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTAGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFLECPHVYFCGNTPSFGSKVIRGPEDQTVLLVAVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|444517803|gb|ELV11799.1| DNA polymerase delta subunit 2 [Tupaia chinensis]
Length = 469
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 183/425 (43%), Positives = 255/425 (60%), Gaps = 7/425 (1%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L++ +W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVHRAQQHWGSAIGVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
C ++GTL+K M L+PSIL E S+E S P ++HPDD LVLEDE R+KL G +
Sbjct: 90 RCCVVGTLFKAMPLQPSILREISEEHSLLPQPPRSKYIHPDDELVLEDELQRIKLNGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
S VTG V+A+ G G FLV D A LAPQ+ +P + +++ G G
Sbjct: 149 NVSLLVTGTVLAVLGSVGDDGRFLVEDHCLADLAPQEPVPSLDMDRFVLLVSGLGLGGGG 208
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASKD 250
+ L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 209 GESLLSTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSPSTQNRDSINKAKYLTKKA 268
Query: 251 QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 269 QAASVEAVKMLDEVLLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLV 328
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 329 TNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFY 388
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECH 430
DPF+ CPHVYF GN F ++ + G + Q V LV +P FS T A +VNL++L C
Sbjct: 389 KTDPFIFVECPHVYFCGNTPSFGSKTIHGPEDQTVLLVAVPDFSATQTACLVNLRSLACQ 448
Query: 431 TLSFG 435
+SF
Sbjct: 449 PISFS 453
>gi|410951892|ref|XP_003982626.1| PREDICTED: DNA polymerase delta subunit 2 [Felis catus]
Length = 469
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 256/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
+ Y +PF + + ++ +QY+ IY RL MR L S +W + I + EL+ G
Sbjct: 30 SMYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAKQHWGAGVQIKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLEGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ VTG V+A+ G G+FLV D A LAPQ+ P + +++ G
Sbjct: 148 IDVCKLVTGTVLAVLGSVRDTGKFLVEDHCFAELAPQEPAPCLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRIRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++ +G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIFRGPEDQRVLLVAVPDFSSTQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>gi|149557343|ref|XP_001520117.1| PREDICTED: DNA polymerase delta subunit 2-like [Ornithorhynchus
anatinus]
Length = 471
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 182/425 (42%), Positives = 257/425 (60%), Gaps = 7/425 (1%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARL-HLMRALLYSLVPNWKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL H+ L+ W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIHMTPLLVNRARQRWGSGVNVRKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
EC ++GTLYK M+L+PSIL E S+E + P ++HPDD L+LEDE R+KL G +
Sbjct: 90 ECCVVGTLYKAMQLQPSILREISEEHNLLPQPTRTKYLHPDDELILEDELQRIKLEGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
S VTG V+A+ G G+FLV + A L PQK L + +++ G G
Sbjct: 149 DVSRLVTGTVLAVRGSVKDDGKFLVEEHCFADLPPQKPLAPPDTDRFVLLVSGLGLGGGG 208
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-EIPR---GLLNGQNLASKD 250
+ L QLLVD +TG LGDE EQ AA I V++AGN + +I + + + L K
Sbjct: 209 GESLLGTQLLVDVVTGQLGDEGEQSCAAHISRVILAGNLLSQITQNRDSITKAKYLTKKA 268
Query: 251 QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
Q+ E IK LD +L Q++A VP+D+MPG DP NF+LPQQPL+ C+FP ++ Y+T +
Sbjct: 269 QAASVEAIKMLDEILLQLSASVPVDVMPGEFDPTNFTLPQQPLHPCMFPLASAYSTLQLV 328
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
TNP+ +D V FLGTSGQ + D+ +YS D LE +E TLR H++PTAP+TLGCYPF
Sbjct: 329 TNPYQATIDGVSFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVGHISPTAPDTLGCYPFY 388
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECH 430
DPF++ +CPHVYF GN F + ++G + Q V LV +P FS T A +VNL+ L+C
Sbjct: 389 KSDPFIIPTCPHVYFCGNTPTFRCKEVQGPEGQRVLLVAVPDFSATQTACLVNLRTLDCQ 448
Query: 431 TLSFG 435
+SF
Sbjct: 449 PISFS 453
>gi|320169509|gb|EFW46408.1| DNA polymerase delta small subunit [Capsaspora owczarzaki ATCC
30864]
Length = 484
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 196/442 (44%), Positives = 269/442 (60%), Gaps = 18/442 (4%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-W-KPH--LP--- 63
+R +A+Y +E F++ ++ +QYS IYF RLH ++ ++ + W KP LP
Sbjct: 43 RRAEASYASFNERFQVTQQRLFERQYSHIYFDRLHALKPIVLKRAQDRWTKPAAGLPAPS 102
Query: 64 -ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED 122
+ ++ LE GR C +GTLYK M LKPSIL E ++ER P + DD +VLED
Sbjct: 103 FVNQLVHLEIGRRCFAVGTLYKEMTLKPSILKEIAEERDLVPQPPRARYTSDDDFIVLED 162
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS---GE 179
SGRV+LGG S VTG VVA+ G E S GEF+V + L AG APQ L S G+
Sbjct: 163 SSGRVRLGG-NFPSSELVTGDVVAVLGTEQSGGEFVVEEWLMAGPAPQPALDTASRMRGD 221
Query: 180 --DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP 237
D +V +VSGL +G +PL +LL + + G+LG E + +AA +V VV+AGNS+
Sbjct: 222 ELDPHVAIVSGLELGKSDQDPLALELLSEFLCGNLGGELNKDLAASVVRVVVAGNSLFNQ 281
Query: 238 RGLLNGQN---LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
+ L +A S + ++LD +L+ IA+ P+D+M GP DP N LPQQPL+
Sbjct: 282 KELEEASKPKYMARNAVSLGLQTTQQLDSILSNIASTCPVDVMSGPLDPTNHILPQQPLH 341
Query: 295 RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWR 354
RCLFP + TF++ NP+ +D V +GTSGQ IDD+ K+ +D+L +E TL+ R
Sbjct: 342 RCLFPRAYALQTFQTVPNPYHVAVDGVHIMGTSGQPIDDMIKFQIGDDRLALLEHTLQGR 401
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS 414
HLAPTAP+TL C+P + DPF++ES PHVYFA NQ +F T +LKG D Q VRLV IP FS
Sbjct: 402 HLAPTAPDTLACFPL-NADPFILESSPHVYFAANQPEFATSVLKGEDGQSVRLVLIPTFS 460
Query: 415 ETGVAVVVNLKNLECHTLSFGT 436
T V++NL LEC + F T
Sbjct: 461 TTQTIVLLNLVTLECTPVCFRT 482
>gi|395850111|ref|XP_003797642.1| PREDICTED: DNA polymerase delta subunit 2 [Otolemur garnettii]
Length = 543
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 180/425 (42%), Positives = 257/425 (60%), Gaps = 7/425 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + W + + + EL+ G
Sbjct: 104 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVNRAKQQWGSGVEVKKLCELQPG 162
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M+L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 163 EKCCVVGTLFKAMQLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 221
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LA QK +P + +++ G
Sbjct: 222 IDVSKLVTGTVLAVLGSVRDDGKFLVEDHCFADLALQKPMPTLDTDQFVLLVSGLGLGGG 281
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + + + + L K
Sbjct: 282 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 341
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 342 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 401
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D L+ +E TLR H++PTAP+TLGCYPF
Sbjct: 402 VTNPYQATIDGVRFLGTSGQNVIDIFRYSSMEDHLDILEWTLRVGHISPTAPDTLGCYPF 461
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 462 YKTDPFIFSECPHVYFCGNTPSFGSKIIQGPEDQRVLLVTVPDFSATQTACLVNLRSLAC 521
Query: 430 HTLSF 434
+SF
Sbjct: 522 QPISF 526
>gi|198433881|ref|XP_002126992.1| PREDICTED: similar to XlCdc1 [Ciona intestinalis]
Length = 461
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 175/450 (38%), Positives = 265/450 (58%), Gaps = 13/450 (2%)
Query: 1 MEIDGE----EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLV 55
ME+DG+ E R+ L + F + E Y +QY+ IYF R +MR ++ +
Sbjct: 1 MEVDGDMETDETIHTRQSCERENLSKRFTVINEPYE-RQYAHIYFVRSEIMRPKVIQAAQ 59
Query: 56 PNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD 115
W + I + E+EEG +C I+GTL+K M+L+PSIL E S+E + F+ D
Sbjct: 60 RKWGDGVKINKLSEIEEGEKCCIVGTLFKQMELQPSILKEISEEVHVQIQPERKRFISDD 119
Query: 116 DHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL 175
D L+LED R+ L G + TG VVAL GKET +G F V D AGL Q P
Sbjct: 120 DKLILEDTMQRISLTG-NISAGDCFTGTVVALLGKETKSGHFNVEDFTYAGLPSQIPAPD 178
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
G D YV+ VSGL +G LQ Q+L+D+I G LG ++ ++++IVHV++AGNS+
Sbjct: 179 LVGNDNYVLFVSGLGIGGKKEKTLQIQMLIDYILGMLGGSEDHEVSSKIVHVIVAGNSLA 238
Query: 236 ----IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+ L K ++ + I +LD L+Q+ V +D+M G DP N LPQ+
Sbjct: 239 GETLDKEAQTKARYLTYKSEASTVQAISDLDFFLSQLVPFVSVDLMGGEFDPTNHVLPQK 298
Query: 292 PLNRCLFPGSATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMER 349
P++ C+FP S + NTF + +NP+ +++ V LGTSGQ +D+L+ YS +D ++ +
Sbjct: 299 PMHPCMFPSSRRFYDNTFHTVSNPYECKINGVYILGTSGQNLDNLKSYSNVDDDIKLLSS 358
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC 409
+ +H+APTAP+TLGC+PF DPF++E CPHV+F+GNQ K+ + + KG++ Q V L+
Sbjct: 359 MIECQHVAPTAPDTLGCFPFYKSDPFIIEQCPHVFFSGNQSKYFSSVKKGAEGQKVLLLA 418
Query: 410 IPKFSETGVAVVVNLKNLECHTLSFGTQFS 439
+P F++T AV+VNLK+L ++F +S
Sbjct: 419 VPAFTQTCSAVLVNLKDLTAEEINFEADWS 448
>gi|1008460|gb|AAC48475.1| DNA polymerase delta small subunit [Bos taurus]
Length = 469
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 191/426 (44%), Positives = 264/426 (61%), Gaps = 11/426 (2%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGR 74
TY +PF + + T+ +QY+ IY R MR L S W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERTF-SRQYAHIYATRFIQMRPFLVSRAQQRWGSGVLVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G +
Sbjct: 90 KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYVVLVSGLNVGS 193
S VTG V+A+ G G+FLV D AGLAPQK PL++ D++V+LVSGL +G
Sbjct: 149 DVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGG 206
Query: 194 GTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLAS 248
G L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 207 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 266
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 326
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 327 LVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYP 386
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL +L
Sbjct: 387 SYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLGSLA 446
Query: 429 CHTLSF 434
C +SF
Sbjct: 447 CQPISF 452
>gi|410928120|ref|XP_003977449.1| PREDICTED: DNA polymerase delta subunit 2-like [Takifugu rubripes]
Length = 471
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 178/431 (41%), Positives = 265/431 (61%), Gaps = 9/431 (2%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVL 68
+R + Y E + + + ++ +QY+ IY ARL M+ LL W +PI +
Sbjct: 27 FERTSSRYCPRSERYTVGERSF-SRQYAHIYAARLMQMKPLLSEAAQQKWGAEVPIKKLC 85
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
+L+ G +C I+GTL+K M+L+PSIL E S E + P ++ D L+LEDE R+K
Sbjct: 86 DLQAGEQCCIVGTLFKGMELQPSILKEISDELNLLPQPARVKYISETDKLILEDELQRIK 145
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L G ++ VTG V+A++G E + G F V D A Q P S D +V+L SG
Sbjct: 146 LEG-KIDRDKCVTGSVIAVYGAEKNDGIFTVEDFCTADFPAQTPRPALSC-DTFVLLASG 203
Query: 189 LNVGSGTSNP-LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNG 243
L +GS ++ L QLLVD +TG LG+++EQ AA I +++AGN + + L
Sbjct: 204 LGLGSSRADSMLGLQLLVDMVTGQLGEQQEQNGAATISRIILAGNLLSQNTQEKDAALKP 263
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+ L K Q+ E ++ LD LL Q+ A VP+D+MPG DP N++LPQQPL+ C+FP S+
Sbjct: 264 KYLTKKTQAGSVEAVRLLDELLLQLVASVPVDVMPGQYDPTNYTLPQQPLHPCMFPLSSA 323
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
Y T +NP+ ++D VR LGTSGQ + D+Q+YS ++ L+ +E TL+ +H+APTAP+T
Sbjct: 324 YPTLHLVSNPYQADIDGVRVLGTSGQNVRDIQRYSSMDNHLDILEETLQLQHMAPTAPDT 383
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
LGCYPF +DPF++E CPHVYF+GN F+++++ G+ Q V LV +P+FS T A +VN
Sbjct: 384 LGCYPFYQKDPFILEECPHVYFSGNAPTFQSKIITGAGGQEVLLVTVPEFSGTQTACLVN 443
Query: 424 LKNLECHTLSF 434
L+ L C ++F
Sbjct: 444 LRTLSCEPVTF 454
>gi|326433133|gb|EGD78703.1| hypothetical protein PTSG_01682 [Salpingoeca sp. ATCC 50818]
Length = 456
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 175/410 (42%), Positives = 253/410 (61%), Gaps = 13/410 (3%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSI 92
+QY+ +YF R + + L+ + N W + +L++E+ +ECV+ G LYK M LKP+I
Sbjct: 48 RQYAHVYFTRYNSFKKLIETAATNKWPSKHVVPKLLDIEKEKECVVFGVLYKDMPLKPNI 107
Query: 93 LDEY-SKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151
LDEY ++E P + + +D LVLED SGR+ L G L +V+G+VVA+ GK
Sbjct: 108 LDEYHARENYEAPPPERSKYNSDEDALVLEDMSGRIVLIGDALDVGTHVSGVVVAVLGKA 167
Query: 152 TSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH 211
+GEF + DV PQK LP YV LVSGLN+ L QLL D I G+
Sbjct: 168 LPSGEFQIADVCYPRFPPQKRLP--KIPPSYVCLVSGLNISKNDKARLSMQLLSDFIQGN 225
Query: 212 LGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA-SKDQSRLFEPI---KELDILLTQ 267
+G +Q +AA IVHV++AGN + R Q+L K ++ + E + +E+D+ L Q
Sbjct: 226 IGSTADQELAASIVHVIVAGNLVW--RLDDEHQDLPLYKKRTMIPESVGHMREVDLFLAQ 283
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTS 327
+ V +D+MPGP+DP++ LPQQP++ C+FP + ++ + TNP+ + FLGTS
Sbjct: 284 MGINVRVDLMPGPHDPSDAILPQQPMHPCMFPLARNVSSVKGETNPYETTVAGRTFLGTS 343
Query: 328 GQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF--TD-RDPFLVESCPHVY 384
GQ +DD+ ++S D+L +E+TL W L PTAP+TLGC+P+ TD DPF++ SCPHVY
Sbjct: 344 GQGVDDIYRFSTEEDRLRILEQTLEWAQLFPTAPDTLGCFPYHMTDFSDPFVITSCPHVY 403
Query: 385 FAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
FAGNQ F T+L+ G + Q VRLVC+P FS+T AV++NL LEC + F
Sbjct: 404 FAGNQPSFATKLVTGPEGQQVRLVCVPSFSDTHTAVLLNLATLECEPIQF 453
>gi|345567478|gb|EGX50410.1| hypothetical protein AOL_s00076g174 [Arthrobotrys oligospora ATCC
24927]
Length = 466
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 266/461 (57%), Gaps = 30/461 (6%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYS--------LVP 56
E +R Q Y D F++ +Y+ QY IYF RL ++ ++ + +
Sbjct: 3 SENPVFERHQTVYK-TDTKFQLDTLSYQ-TQYVDIYFLRLAKLKRIVEAHGRERWDAVEV 60
Query: 57 NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKER-STTPLVKPHNFMHPD 115
N + VL++ +G C I GT+Y +M LKP++LD+ +K+ + PL +
Sbjct: 61 NGDYVKRVDRVLDVRQGELCWITGTIYMNMPLKPNVLDDIAKDHFISAPLPRQKYRDFEK 120
Query: 116 DHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL 175
D +++EDESGR++L G+++ VTG VV + G ET++GEF V+D++ L Q P+
Sbjct: 121 DQIMIEDESGRLELVGSKIKTEDLVTGCVVGVMGTETASGEFEVIDIVLPELPDQNPRPI 180
Query: 176 N---SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
S + YV L+SGLN+ ++ LLV+++ G G ++Q + I ++IAGN
Sbjct: 181 PKAPSSQRNYVALLSGLNITGNIHESIETHLLVEYLLGEAGSPEDQAKTSSISRLIIAGN 240
Query: 233 SIEIPRGL--------------LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMP 278
S+ P + S +P LD LLT + + + +MP
Sbjct: 241 SLSEPHAQATDDAAAAASSSRPTKSKKYGYDAASYNAKPTAVLDALLTDLCTSISVTLMP 300
Query: 279 GPNDPANFSLPQQPLNRCLFPGSATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336
G DPAN SLPQQ ++ +FP + Y +TF TNPH E+D VRFLGTSGQTIDD+ K
Sbjct: 301 GETDPANASLPQQKMHPTMFPTAKYYTGSTFIPSTNPHACEIDGVRFLGTSGQTIDDVFK 360
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL 396
Y + +D+LE ME+TLRWR +APTAP+TL CYPF D D F++E+CPHVYF GNQ +F TRL
Sbjct: 361 YVDGDDRLEMMEKTLRWRLVAPTAPDTLWCYPFQDDDQFVIETCPHVYFIGNQSEFGTRL 420
Query: 397 LKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
G + Q VRL+ IPKFSETG V+V+L+ L+C +SF ++
Sbjct: 421 THGLNNQEVRLITIPKFSETGELVLVDLETLDCEIISFKSK 461
>gi|363747285|ref|XP_003643965.1| PREDICTED: DNA polymerase delta subunit 2-like [Gallus gallus]
Length = 466
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 188/437 (43%), Positives = 265/437 (60%), Gaps = 11/437 (2%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLP 63
E R + + +PF + + ++ +QY+ +Y RL MR L W +
Sbjct: 19 AEPPTFARTGSDFADRSQPFRLGERSF-SRQYAHLYATRLLCMRPRLEQQARLRWGDGVL 77
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
+ + +L+ G C ++GTL+K M+L+PSIL E ++E + P ++ P D LVLEDE
Sbjct: 78 LRKLCQLQVGERCCVVGTLFKAMRLQPSILQEINEEHNLVPQPSLAKYVDPSDELVLEDE 137
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS-GEDKY 182
R+KL G+ + S VTG V+A++G E G+FLV + A L PQ LP D++
Sbjct: 138 LQRIKLTGS-IEASRLVTGAVLAVYGHEQEDGKFLVEEHCFAHLPPQ--LPWQGPSTDRF 194
Query: 183 VVLVSGLNVGSGTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIP 237
V+L SGL +GSG+ L QLLVD +TG LG E +Q AA I V++AGN S +
Sbjct: 195 VLLASGLGLGSGSGESLLGTQLLVDAVTGQLGAEGQQSCAALISRVLLAGNLLSQSTQSR 254
Query: 238 RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
L + L K Q+ E +K LD +L Q+ + VP+D+MPG DP N++LPQQPL+RC+
Sbjct: 255 DSLHKAKYLTKKTQAASVEAVKMLDEILLQLCSSVPVDVMPGEFDPTNYTLPQQPLHRCM 314
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
P S+ Y T + TNP+ ++D VRFLGTSGQ I D+ KYS +D LE +E TL H++
Sbjct: 315 LPLSSAYPTLQLVTNPYQADMDGVRFLGTSGQNISDIFKYSSMDDYLEILEWTLLAGHIS 374
Query: 358 PTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETG 417
PTAP+TLGCYPF + DPF++ CPHVYF GN KF+++LL G D Q V LV +P FS T
Sbjct: 375 PTAPDTLGCYPFYNSDPFILTDCPHVYFCGNAPKFQSKLLTGEDGQRVLLVAVPAFSATQ 434
Query: 418 VAVVVNLKNLECHTLSF 434
A +VNL++L C +SF
Sbjct: 435 TACLVNLRDLSCQPISF 451
>gi|327279029|ref|XP_003224261.1| PREDICTED: DNA polymerase delta subunit 2-like [Anolis
carolinensis]
Length = 473
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 182/428 (42%), Positives = 263/428 (61%), Gaps = 11/428 (2%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
++Y + F + + T+ +QY+ IY RL MR LL W ++ + + EL+
Sbjct: 31 SSYTNCSQNFRLGERTF-NRQYAHIYATRLIQMRPLLVERARRKWGSNITVKKLCELQVA 89
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M+L+PSIL E S+E + P ++H D L+LEDE R+KL G
Sbjct: 90 EKCCVVGTLFKSMQLQPSILREISEEHNLPPQPPRTKYIHQSDELILEDELQRIKLEG-N 148
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL-NSGEDKYVVLVSGLNVG 192
+ VTG ++A++G E G+FLV D A + Q LP+ D++V+LVSGL +G
Sbjct: 149 IQIDKLVTGTILAVYGSEGDDGKFLVEDHCFADMPTQ--LPMMGPNTDRFVLLVSGLGLG 206
Query: 193 SGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLA 247
+ L QLLVD +TG LG E EQ AA I V++ GN + R +N + L
Sbjct: 207 GKSGESLLGMQLLVDMVTGQLGAEGEQSSAALISRVILCGNLLSQNTQSRDTMNKAKYLT 266
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
K Q+ + +K LD +L Q++ VP+D+MPG DP N++LPQQPL+RC+FP S+ Y+T
Sbjct: 267 KKTQAASVDAVKMLDEILLQLSMSVPVDVMPGEFDPTNYTLPQQPLHRCMFPLSSAYSTL 326
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ +D +RFLGTSGQ I+D+ KYS +D LE +E TLR HL+PTAP+TLGCY
Sbjct: 327 QLVTNPYQANIDGIRFLGTSGQNINDIFKYSSMSDYLEILEWTLRIGHLSPTAPDTLGCY 386
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
PF DPF+ CPHVYF GN F+++++KG D Q V L+ +P FS T A ++NL++L
Sbjct: 387 PFYKTDPFIFTDCPHVYFCGNAHSFKSKVVKGDDGQKVLLLTLPDFSITQTACLINLRDL 446
Query: 428 ECHTLSFG 435
C +SF
Sbjct: 447 TCQPVSFS 454
>gi|66812748|ref|XP_640553.1| DNA polymerase delta subunit 2 [Dictyostelium discoideum AX4]
gi|60468579|gb|EAL66582.1| DNA polymerase delta subunit 2 [Dictyostelium discoideum AX4]
Length = 521
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 175/413 (42%), Positives = 248/413 (60%), Gaps = 16/413 (3%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
QYS IY +RL + +L V + P +P +L ++ G EC++IGTLYK M+LKP+IL
Sbjct: 102 QYSSIYASRLEKLNPILVENVESKYPGIPTQKILHMKPGDECIMIGTLYKEMELKPNILK 161
Query: 95 EYSKERSTTPLVKPHN---FMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151
Y+++R+ P+ P N F+ D L ED +GRVKL G++ + + VTG+ VA+ GK
Sbjct: 162 AYAQDRAMLPI--PDNRESFIGEKDKLFFEDNTGRVKLIGSKEMVDSLVTGLNVAILGKG 219
Query: 152 TSAGEFLVLDVLDAGLAPQ-KELPLNS-GEDKYVVLVSGLNVGSGTSNPLQFQLLVDHIT 209
EF V D++ G+ PQ L S +D Y+ L+SGLNVG +N Q QLL+D++
Sbjct: 220 LPDAEFEVRDIVFPGIPPQPHSRDLESLKDDAYICLISGLNVGDA-NNIFQTQLLMDYLQ 278
Query: 210 GHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLL------NGQNLASKDQSRLFEPIKELDI 263
G+L D + +I V+ GNSI + + ++ Q++ PIK+LD
Sbjct: 279 GNLVDNGSD-LLGKICKVLFVGNSIHKENEPIEAFVRYSSKSEIQAKQAKKAIPIKDLDG 337
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ VP+DI+PGPNDP N SLPQ PLN CLFP S +CTNP+ ++
Sbjct: 338 FLCELCQTVPVDIIPGPNDPTNISLPQLPLNSCLFPFSIQNTNLTTCTNPYQSQIGGRLL 397
Query: 324 LGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHV 383
LGTSGQ I++ +Y +++ E TL WRHLAPTAP+TL C D DPF++E CP +
Sbjct: 398 LGTSGQNIENASRYMTYENKMSLTESTLIWRHLAPTAPDTLTCAAL-DNDPFVIEQCPDI 456
Query: 384 YFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
YF GNQ FET+LLKG + ++VRL+ IP FSET ++VNLK L+ + F T
Sbjct: 457 YFVGNQDHFETKLLKGPNDEIVRLIFIPNFSETNTIILVNLKTLDTFPIHFNT 509
>gi|330801695|ref|XP_003288860.1| hypothetical protein DICPUDRAFT_153145 [Dictyostelium purpureum]
gi|325081106|gb|EGC34635.1| hypothetical protein DICPUDRAFT_153145 [Dictyostelium purpureum]
Length = 526
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/415 (42%), Positives = 255/415 (61%), Gaps = 18/415 (4%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
QY+ IY +RL +R +L V + ++P+ +L+++ G ECV+IGTLYK M+LKP+IL
Sbjct: 105 QYNTIYSSRLEKLRPVLMEQVESKFSNVPVQKILQMKPGDECVMIGTLYKEMELKPNILK 164
Query: 95 EYSKERSTTPLVKPHN---FMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151
+Y+++R+ PL P N F+ D L ED++GRVKL G + + + VTG+ VA+ G+
Sbjct: 165 QYAQDRAMLPL--PDNRESFISEKDKLFFEDDTGRVKLIGEKGMVDSLVTGLNVAIRGRG 222
Query: 152 TSAGEFLVLDVLDAGLAPQ---KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHI 208
+ EF + +VL GL PQ ++L +D Y+ LVSG+ +G+ +N Q LL + +
Sbjct: 223 LTDAEFEIQEVLFPGLPPQPHSRDLE-KIKDDVYICLVSGIGIGN-PNNIFQINLLKEFL 280
Query: 209 TGHLGDEKEQG-IAAEIVHVVIAGNSI---EIPRGLL---NGQNLASKDQSRLFEPIKEL 261
TG +G E EQ +I VV GNSI E P + + Q++ PIKEL
Sbjct: 281 TGSVGSESEQNEFIKKISRVVFVGNSIHKEEEPHEAFVRYSSRQETQAKQAKQALPIKEL 340
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
D L+++ +P+DIMPGPNDP N SLPQ PLN CLFP S TNP+ +
Sbjct: 341 DGYLSELCQSIPVDIMPGPNDPTNVSLPQLPLNSCLFPFSIQNTNTTFATNPYESLVGGR 400
Query: 322 RFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCP 381
LGTSGQ I++ +Y ++ +++ E TL WRHLAPTAP+TL C D+DPF++E CP
Sbjct: 401 VLLGTSGQNIENASRYMKSESKMKIAENTLVWRHLAPTAPDTLTCSAL-DQDPFVIEQCP 459
Query: 382 HVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
H+ F GNQ +E++LLKG + ++VRL+ IPKFSET V VNLK L+ ++F T
Sbjct: 460 HILFFGNQDHYESKLLKGPNDEVVRLIFIPKFSETNTIVCVNLKTLDTFPITFNT 514
>gi|281210659|gb|EFA84825.1| DNA polymerase delta subunit 2 [Polysphondylium pallidum PN500]
Length = 535
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/411 (40%), Positives = 252/411 (61%), Gaps = 20/411 (4%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
+Q+++IY+ RL R +L+SL P + I +L L+ G EC++IGTLYK M LKP+IL
Sbjct: 135 RQFNKIYYDRLEKFRPILFSLAETKYPGVSINKILHLKPGEECILIGTLYKEMPLKPNIL 194
Query: 94 DEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETS 153
+Y++++S+ + D L+LEDE+GRVKL G + L +++TG+ VA+ G +
Sbjct: 195 KQYAQDKSS--------LIDVGDLLILEDETGRVKLVGDKSLVDSHLTGLGVAIRGVGLA 246
Query: 154 AGEFLVLDVLDAGLAPQKELPLNSG--EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH 211
+ EF + ++ GL PQ L +D YV +VSGLNVG+ S L LL D I+G+
Sbjct: 247 SAEFEIKEIFTPGLPPQPYLRNFEKLEDDTYVCIVSGLNVGNPNS-ILSTNLLTDFISGN 305
Query: 212 LGDEKEQGIAAEIVHVVIAGNSI----EIPRGLL---NGQNLASKDQSRLFEPIKELDIL 264
LG +Q ++ I ++IAG+SI + P + Q + S+ Q ++ PIKE D +
Sbjct: 306 LGSPSDQYFSSRIARLIIAGDSIYKEADSPESFMKYRTKQEIHSR-QQKIALPIKEFDSI 364
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L ++ +P+D++PG +DP N SLPQ PLN C P S + +NP+ E+ FL
Sbjct: 365 LAELCQSIPVDVLPGESDPTNLSLPQLPLNFCQTPFSVQNANYNPVSNPYESEIGGRIFL 424
Query: 325 GTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVY 384
GTSGQ I++ +Y D++E M + L WRHLAPTAP+TL C P + DPF++E CPHVY
Sbjct: 425 GTSGQNIENAIRYINIQDKIELMHKMLIWRHLAPTAPDTLACSPL-EHDPFIIEQCPHVY 483
Query: 385 FAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
F GN ++ET+L++G D + +RL+ +PKF +T ++VNLK L+ + F
Sbjct: 484 FIGNNDRYETKLIQGEDGEQIRLILVPKFVDTNTVILVNLKTLDTFPIIFN 534
>gi|156375394|ref|XP_001630066.1| predicted protein [Nematostella vectensis]
gi|156217079|gb|EDO38003.1| predicted protein [Nematostella vectensis]
Length = 514
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 172/469 (36%), Positives = 267/469 (56%), Gaps = 39/469 (8%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPI 64
+E ++ R +Y L E F +++ ++ G+QYSQ Y RL MR L + W LPI
Sbjct: 32 DENKVDRATCSYENLSERFRLKERSF-GRQYSQFYAVRLMAMRKKLAAAARRKWGNSLPI 90
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPH--NFMHPDDHLVLED 122
+ EL+ +C IIGTL+K M+LKP +L E S E++ L++P N++ DD +VLED
Sbjct: 91 KKLTELKLDEKCCIIGTLFKKMELKPCVLKEMSAEQNL--LLQPSRANYVSDDDFMVLED 148
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL----APQKELPLNSG 178
ES RV L G + S+ ++G ++AL G+ + G+F+V D +GL AP + + G
Sbjct: 149 ESERVVLTGNIEVGSS-ISGTIMALSGRTSDDGKFVVEDSCTSGLPYQVAPDLDQDIAEG 207
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI---- 234
D+++VLVSGL G + + L QLL D ITG LG ++Q ++V V++AGNS+
Sbjct: 208 NDRFLVLVSGLGFGEESQDMLSLQLLSDLITGELGSLQDQESCGKVVRVIVAGNSLSKCT 267
Query: 235 EIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
+ + L + +K LD L Q+A+ V +D+MPG DP N +LPQQPL+
Sbjct: 268 QTKESEKKAKYLTRNLTAGTVSAVKSLDEFLQQLASCVAVDVMPGEFDPTNHALPQQPLH 327
Query: 295 RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWR 354
RC+FP + Y T +S TNP+ + +R LGTSGQ + D+ K + ++ ++ +E+ +
Sbjct: 328 RCMFPEAIAYPTMQSVTNPYEAVIGGIRVLGTSGQNVSDISKVTTFDNSMDILEQNMVCS 387
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET-------------------- 394
HLAPTAP+TL CYP+ D+DPF++E CPHVYFA NQ +++
Sbjct: 388 HLAPTAPDTLDCYPYADQDPFILEKCPHVYFASNQPSYQSKVLTGKASYQHEILTGEIPE 447
Query: 395 ----RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS 439
++L G ++Q V LV +P F+ + ++NL+ L C L + +
Sbjct: 448 SNQPKILTGDNKQRVLLVAVPAFATSKTCALINLRTLTCQPLKVSSTIA 496
>gi|194389848|dbj|BAG60440.1| unnamed protein product [Homo sapiens]
Length = 435
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/371 (45%), Positives = 230/371 (61%), Gaps = 5/371 (1%)
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
EL+ +C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+K
Sbjct: 50 ELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIK 109
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L G + S VTG V+A+ G G+FLV D A LAPQK P + +++
Sbjct: 110 LKGT-IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGL 168
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQ 244
G G + L QLLVD +TG LGDE EQ AA + V++AGN S + + +
Sbjct: 169 GLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAK 228
Query: 245 NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY 304
L K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y
Sbjct: 229 YLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAY 288
Query: 305 NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL 364
+T + TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TL
Sbjct: 289 STLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTL 348
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNL 424
GCYPF DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL
Sbjct: 349 GCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNL 408
Query: 425 KNLECHTLSFG 435
++L C +SF
Sbjct: 409 RSLACQPISFS 419
>gi|148233344|ref|NP_001080101.1| DNA polymerase delta subunit 2 [Xenopus laevis]
gi|13431459|sp|O93610.1|DPOD2_XENLA RecName: Full=DNA polymerase delta subunit 2; AltName: Full=XlCdc1
gi|3718033|emb|CAA09373.1| XlCdc1 [Xenopus laevis]
gi|28703913|gb|AAH47262.1| Pold2-prov protein [Xenopus laevis]
Length = 463
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 183/417 (43%), Positives = 259/417 (62%), Gaps = 9/417 (2%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLY-SLVPNWKPHLPICTVLELEEGRECVIIGTL 82
F + + T+ +QY+ IY RL MR LL S W + + + EL+ G +C +IGTL
Sbjct: 39 FRLGERTFT-RQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKLCELQGGEKCCVIGTL 97
Query: 83 YKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTG 142
+K M+L+PSIL E S+E + P ++ D L+LEDE R+KL GA + VTG
Sbjct: 98 FKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQRIKLEGATDV-QQLVTG 156
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
V+A+ G E AG+F+V D L Q LP S ED++V+L SGL +G G+ + L
Sbjct: 157 AVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLS-EDRFVLLTSGLGLGGGSGDSLMGL 215
Query: 203 LLVDH-ITGHLGDEKEQGIAAEIVHVVIAGNSI-EIPRG---LLNGQNLASKDQSRLFEP 257
L+ +TG G E++QG AA I V++AGN + E +G L + L+ K Q+ E
Sbjct: 216 QLLLDLVTGQAGAEEDQGCAARISRVILAGNLLSENTQGKDSLNKAKYLSKKTQAASVEA 275
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
+K LD +L Q++ V +D+MPG DP N+ LPQQPL+RC+FP SA Y+T + TNP+ E
Sbjct: 276 VKMLDEILLQMSGSVSVDVMPGAFDPTNYILPQQPLHRCMFPQSALYSTLQLVTNPYEAE 335
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
+D VRFLGTSGQ I D+ KYS D L+ +E TL+ HL PTAP+TLGCYPF DPF++
Sbjct: 336 IDGVRFLGTSGQNIGDIYKYSSMQDYLDILEWTLQVGHLCPTAPDTLGCYPFYKSDPFIL 395
Query: 378 ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
++CPHVYF G+ KF + + G++ Q V L+ +P+F T A +VNL+ L+C +SF
Sbjct: 396 QNCPHVYFCGSAPKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTLQCQPISF 452
>gi|54262198|ref|NP_001005794.1| DNA-directed DNA polymerase delta 2 [Xenopus (Silurana) tropicalis]
gi|49522345|gb|AAH75341.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa
[Xenopus (Silurana) tropicalis]
gi|89272894|emb|CAJ83206.1| polymerase (DNA directed), delta 2, regulatory subunit 50kDa
[Xenopus (Silurana) tropicalis]
Length = 463
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 183/440 (41%), Positives = 261/440 (59%), Gaps = 11/440 (2%)
Query: 2 EIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKP 60
E+ R+ Q Y F + + T+ +QY+ IY RL MR LL W
Sbjct: 19 EVQATFTRVSNTQ--YANCSSVFRLGERTFT-RQYAHIYATRLEQMRPLLIKRAKQLWGD 75
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
+ + + EL+ +C ++GTL+K M+L+PSIL E S+E + P H ++ D L+L
Sbjct: 76 DVAVRKLCELQGEEKCCVVGTLFKSMELQPSILREISEEHNLLPQPARHKYISDSDELIL 135
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDE R+KL GA + VTG V+A+ G E AG+F+V D L Q LP S ED
Sbjct: 136 EDELQRIKLEGATDV-QQLVTGAVLAVLGSEGDAGKFMVEDFCLTSLPAQSPLPRLS-ED 193
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDH-ITGHLGDEKEQGIAAEIVHVVIAGN----SIE 235
++V+L SGL +G G+ + L L+ +TG G E++QG AA I V++AGN + +
Sbjct: 194 RFVLLTSGLGLGGGSGDSLMGLQLLLDLVTGQAGAEEDQGCAARISRVILAGNLLSQNTQ 253
Query: 236 IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
L + L+ K Q+ E +K LD +L Q++ V +D+MPG DP N+ LPQQPL+R
Sbjct: 254 GKDSLNKAKYLSKKTQAASVEAVKMLDEILLQLSGSVSVDVMPGAFDPTNYILPQQPLHR 313
Query: 296 CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRH 355
C+FP SA Y+T + TNP+ E+D VRFLGTSGQ I D+ KYS D L+ +E TL+ H
Sbjct: 314 CMFPQSAVYSTLQLVTNPYEAEIDGVRFLGTSGQNISDIYKYSSMQDYLDILEWTLQVGH 373
Query: 356 LAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE 415
L PTAP+TLGCYPF DPF++++CPHVYF G+ KF + + G + Q V L+ +P+F
Sbjct: 374 LCPTAPDTLGCYPFYKSDPFILQNCPHVYFCGSAPKFSCKEVTGKEGQRVLLLTVPEFCS 433
Query: 416 TGVAVVVNLKNLECHTLSFG 435
T A +VNL+ L+C +SF
Sbjct: 434 TQTACLVNLRTLQCQPVSFS 453
>gi|344293820|ref|XP_003418618.1| PREDICTED: DNA polymerase delta subunit 2-like [Loxodonta africana]
Length = 460
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 249/424 (58%), Gaps = 17/424 (4%)
Query: 17 YIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRE 75
Y +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G E
Sbjct: 32 YTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQHWGSGVRVRKLCELQPGEE 90
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL 135
C ++GTL+K M+L+PSIL E S+E + P ++HPDD LVLEDE R+KL G +
Sbjct: 91 CCVVGTLFKAMQLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLEGT-IE 149
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGT 195
VTG V+A+ G E G G + L +++ G G
Sbjct: 150 VQKLVTGTVLAVLGSEQHLG----------GHEAETRQWLCCLALFVLLVSGLGLGGGGG 199
Query: 196 SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PRGLLN-GQNLASKDQ 251
+ L QLLVD +TG LGDE EQ AA I V++AGN + R +N + L K Q
Sbjct: 200 ESLLGTQLLVDVVTGQLGDEGEQCSAAHISRVILAGNLLSQNTQSRDSINKAKYLTKKTQ 259
Query: 252 SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT 311
+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T + T
Sbjct: 260 AASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVT 319
Query: 312 NPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTD 371
NP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 320 NPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYK 379
Query: 372 RDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHT 431
DPF+V CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 380 TDPFIVPECPHVYFCGNTPSFGSKVIRGPEDQTVLLVAVPDFSATQTACLVNLRSLVCQP 439
Query: 432 LSFG 435
+SF
Sbjct: 440 ISFS 443
>gi|321479225|gb|EFX90181.1| hypothetical protein DAPPUDRAFT_299981 [Daphnia pulex]
Length = 444
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 167/437 (38%), Positives = 254/437 (58%), Gaps = 8/437 (1%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPI 64
E R +RK+ Y L F++ + +QY+ IY RL R LL V W PI
Sbjct: 2 EAVRYERKELDYEDLSSTFKLVNRDF-NRQYAGIYAVRLTKFRTLLEERVEKKWGKQYPI 60
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDES 124
+++L + + GT+YK +LKPSIL E S E PL ++ D L+LEDE
Sbjct: 61 KKLVDLVPNEKVFVFGTIYKQQELKPSILREVSDEHQVLPLPPKARYVSGTDILILEDEL 120
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYV 183
R+ L G + +VTG+V+AL G E +G+F+V D+ A + P ++ +++
Sbjct: 121 QRILLVGNTNV-GEFVTGVVIALLGHEDDSGKFIVEDICPADMPVVVNSPKIDFSTPRFI 179
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP---RGL 240
L+SGL++GSG + L Q ++ + G G + Q I +++ ++IAGNS+ R +
Sbjct: 180 ALISGLDLGSGNDSYLLMQEMIFTLMGKTGTPEVQEIMSKVSRLIIAGNSLSSATQDRHI 239
Query: 241 LN-GQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
L+ + L + E +++LD ++ Q+A+ + +D+MPG +DPANF LPQQPL+ CL P
Sbjct: 240 LDKAKYLMRNNMVASIEAVQQLDDIIFQLASSITVDVMPGAHDPANFVLPQQPLHHCLLP 299
Query: 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPT 359
S +TF + +NP+ + +G SGQ + D+ S L+ ME+TL WRH+ PT
Sbjct: 300 QSYQLSTFHTVSNPYNCRIGGRIVMGNSGQPVLDILMNSSLEHPLDAMEKTLEWRHMCPT 359
Query: 360 APNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVA 419
AP+TLGCYP+ D DPF+ +CP +YFAGNQ+ F RL + +D VRL+ +P+FSE+G
Sbjct: 360 APDTLGCYPYDDDDPFIFNTCPDIYFAGNQESFGDRLWQSADGHPVRLISLPRFSESGTI 419
Query: 420 VVVNLKNLECHTLSFGT 436
V+V+ LEC TLSFGT
Sbjct: 420 VIVDANTLECFTLSFGT 436
>gi|159472516|ref|XP_001694397.1| DNA polymerase delta small subunit [Chlamydomonas reinhardtii]
gi|158277060|gb|EDP02830.1| DNA polymerase delta small subunit [Chlamydomonas reinhardtii]
Length = 431
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 191/432 (44%), Positives = 269/432 (62%), Gaps = 27/432 (6%)
Query: 21 DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIG 80
D F K TY +QY+Q+YF+RL L++ +++ V +P+C++LE++EG+E +IG
Sbjct: 1 DTRFRASKRTY-DRQYAQLYFSRLMLLKDVMHKRVEQLWRGVPVCSILEVQEGKEVAVIG 59
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140
TLYK+MKLKPSILDEY+K+R + NF DD +V+ED+ R+ L L S +
Sbjct: 60 TLYKNMKLKPSILDEYTKDRGLKAALGAANFCADDDSVVMEDDGARMVLSDWGLFLSRHT 119
Query: 141 --------TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE----DKYVVLVSG 188
TG+V+A+ G G+F V V AGLAP D Y+ LVSG
Sbjct: 120 LPGTPQPRTGLVMAVRGVHEPGGDFFVSAVAFAGLAPNPYAAAALAASRPGDTYLALVSG 179
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS 248
L +G G ++ L QL D +TG+LG EQ +AA++V +V+AG I G L G A+
Sbjct: 180 LGLGGGRADLLATQLAADWLTGNLGSAAEQQLAAQVVRLVVAGGGI----GQLEGLAGAA 235
Query: 249 KDQ------SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSA 302
+R +P+++LD+LL ++AA +P+D+MPGP DPAN +LPQQP++RCLFPG+A
Sbjct: 236 ATAPGANPYNRSAQPVRDLDLLLAELAAALPVDVMPGPEDPANVALPQQPMHRCLFPGAA 295
Query: 303 TYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPN 362
++ + TNPH FE VR LG+SGQ +DD+ KY D+L+ M+RTL RHLAPTAP+
Sbjct: 296 SHGSLVRATNPHEFECGGVRVLGSSGQVVDDMAKYCGLRDRLDLMQRTLACRHLAPTAPD 355
Query: 363 TLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
TL CYPFTD DPF++ + PHVYFAGNQ +F TRL+ R + F+ TG V++
Sbjct: 356 TLTCYPFTDDDPFILPATPHVYFAGNQPEFATRLVPVVVRLVAVPC----FARTGTLVLL 411
Query: 423 NLKNLECHTLSF 434
NL+ L CH + F
Sbjct: 412 NLRTLACHPVRF 423
>gi|428179386|gb|EKX48257.1| DNA polymerase delta small subunit [Guillardia theta CCMP2712]
Length = 458
Score = 307 bits (787), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 259/429 (60%), Gaps = 23/429 (5%)
Query: 26 IQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYK 84
+ ++ QY+ +Y+ RL ++ LL K + P +L+LE G++ +I+GTL K
Sbjct: 31 VTQQKSLAAQYADVYYLRLMTLKHGLLDEARSKCKVYKPANRILDLEVGQKSMIVGTLLK 90
Query: 85 HMKLKPSILDEYSK--ERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LLPSAYV 140
MK +P+ILDE++K E + K +++ DD++++EDESGRV L E + V
Sbjct: 91 VMKFRPNILDEFNKDVENISNESFKRNHYSSDDDYVIMEDESGRVNLRFPEDNNMARMLV 150
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
TG+++A +G+ G F V ++ + GL PQ + ++LVSGL +G+ S+PL
Sbjct: 151 TGVILAAYGQLGEDGTFQVDELQNPGLPPQIPTAGKMEGEPKIILVSGLELGNPDSDPLA 210
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK----------- 249
+LVD+ITG+LG + +A++ V+IAG+S + +N +S
Sbjct: 211 VDMLVDYITGNLGGVETFQESAKVAKVIIAGSSC-----FFSSENRSSALYRKADPSQTR 265
Query: 250 -DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
+Q P++ELD+LLT++++ V +DI+PG DP+N +PQQP + CL P + TY++FR
Sbjct: 266 ANQKETANPVRELDLLLTRLSSSVAVDILPGAGDPSNVFMPQQPFHNCLLPSANTYSSFR 325
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP C + + V +GTSGQ ++D+Q+ SE D L+ M+ L+WRHLAPTAP+TL C+P
Sbjct: 326 PTTNP-CAKEEGVIIIGTSGQNVEDIQRCSEVEDPLDVMQNLLQWRHLAPTAPDTLPCFP 384
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
D DPF++ CPH++FAGNQ+ F +R + G Q LV +P FS T AV V+++ L
Sbjct: 385 VKDEDPFILPHCPHIFFAGNQKTFGSRTIDGEKGQKSLLVSVPSFSRTKTAVEVDVRTLT 444
Query: 429 CHTLSFGTQ 437
+SFGT+
Sbjct: 445 ATPISFGTE 453
>gi|312378279|gb|EFR24900.1| hypothetical protein AND_10208 [Anopheles darlingi]
Length = 453
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 173/437 (39%), Positives = 253/437 (57%), Gaps = 11/437 (2%)
Query: 8 ARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYS-LVPNWKPHLPICT 66
A +R + Y++ E F Q + +Q+S IY +RL M L+ +V W +PI
Sbjct: 14 ANFERLKVEYVYRSEKFHFQSRDF-SKQFSFIYSSRLDEMVPLISGRVVEKWGKEMPIKR 72
Query: 67 VLELEEG--RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDES 124
+ +L E ++CVIIGTL+KH +LKPSIL E S+E P ++ D L+LED
Sbjct: 73 LADLREECPQKCVIIGTLFKHQELKPSILREISEENQLAPQPPRSHYTDDKDILILEDAL 132
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK-YV 183
R++L G + + VTG+V AL G + S G F V D L PQK PL S E+ +
Sbjct: 133 QRIRLVG-NIDVHSVVTGVVCALLGYQESDGRFFVEDYLFYEGGPQK--PLKSLENSPLL 189
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGD--EKEQGIAAEIVHVVIAGNSIEIPRGLL 241
VL+SGLN + L +LL + G+L + + AA + +VIAGNS++
Sbjct: 190 VLISGLNQTAANDCSLSLELLQQWLFGNLEGVGQSQDWEAASVARIVIAGNSVKATLKHK 249
Query: 242 NGQNLASKDQ-SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
N + S ++ + L +K +D L+ +A VP+D+MPG DPAN +PQQP+++CLFP
Sbjct: 250 NHLHTKSTNEATELVAAVKAVDTLVHNLAQSVPVDLMPGEFDPANHMIPQQPMHQCLFPQ 309
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
SA + +F NP+ FEL + +GTSGQ + D+ ++S+ + LE ++ TLRW HL PTA
Sbjct: 310 SAEFASFHGVPNPYAFELAGRQIVGTSGQNVLDVMRFSKIENPLEALKATLRWSHLFPTA 369
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TL CYP+ +DPF++ CPHVYFAGN F T ++ Q RL+C+P FSE
Sbjct: 370 PDTLPCYPYYQKDPFILSECPHVYFAGNCGDFMTEQWASANGQTTRLICVPSFSEQQSIA 429
Query: 421 VVNLKNLECHTLSFGTQ 437
VVNL+ +EC +SF +
Sbjct: 430 VVNLRTMECKKVSFAVE 446
>gi|157133194|ref|XP_001662794.1| DNA polymerase delta small subunit [Aedes aegypti]
gi|108870916|gb|EAT35141.1| AAEL012669-PA [Aedes aegypti]
Length = 455
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 250/434 (57%), Gaps = 15/434 (3%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVL 68
+R Y+ + F + + + +Q+S IY +RL M L+ V W PI +
Sbjct: 18 FKRLDVAYVNKSDKFLFKSKDF-SKQFSHIYASRLSEMVGLVTERVKEKWGTEHPIKQLA 76
Query: 69 ELEEG--RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
EL+E +C+IIGTL+KH +LKPSIL E S+E P ++ D L+LED R
Sbjct: 77 ELKEDSPEKCIIIGTLFKHQELKPSILREISEENQLVPQPPRSHYTDDADILILEDALQR 136
Query: 127 VKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVL 185
++L G + S VTG V A+ G E G F V D L PQK L PL +VL
Sbjct: 137 IRLMGKMDVHSV-VTGAVCAVLGYEDGDGRFRVEDYLFYESGPQKPLKPLECS--PLLVL 193
Query: 186 VSGLNVGSGTSNPLQFQLLVDHITGHLGD--EKEQGIAAEIVHVVIAGNSIEI---PRGL 240
+SGLN+GS + +LL I G+L + AA +V VV+AGNS++ P+
Sbjct: 194 MSGLNLGSPNDFSMSMELLQQWIFGNLEGFGQSRDWEAASVVRVVLAGNSVKASVKPKNN 253
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
LNG+ + + + L +K +D + +A V +D+MPG DPAN LPQQP+++C+FP
Sbjct: 254 LNGR--PTTESADLLNAVKAVDTFVHNLAQSVNVDLMPGEFDPANHMLPQQPMHQCMFPK 311
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
+ ++ +FR NP+ E+ LGTSGQ + D+ +YS+ + LE ++ TL W H+APTA
Sbjct: 312 AVSFTSFRGVPNPYALEIAGRSILGTSGQNVHDIARYSKIENPLEALKSTLVWSHIAPTA 371
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TL CYP+ +DPF++ CPHVYFAGN +F T L KGS+ Q RL+C+P FSET
Sbjct: 372 PDTLPCYPYYQQDPFVISECPHVYFAGNTGEFRTELWKGSNGQQTRLICVPSFSETHSVA 431
Query: 421 VVNLKNLECHTLSF 434
VVNL+ L+C + F
Sbjct: 432 VVNLRTLDCQQICF 445
>gi|157116366|ref|XP_001658442.1| DNA polymerase delta small subunit [Aedes aegypti]
gi|108876529|gb|EAT40754.1| AAEL007541-PB [Aedes aegypti]
Length = 455
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 174/435 (40%), Positives = 253/435 (58%), Gaps = 17/435 (3%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVL 68
+R Y+ + F + + + +Q+S IY +RL M L+ V W PI +
Sbjct: 18 FKRLDVAYVNKSDKFLFKSKDF-SKQFSHIYASRLSEMVGLVTERVKEKWGTEHPIKQLA 76
Query: 69 ELEEG--RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
EL+E +C+IIGTL+KH +LKPSIL E S+E P ++ D L+LED R
Sbjct: 77 ELKEDSPEKCIIIGTLFKHQELKPSILREISEENQLVPQPPRSHYTDDADILILEDALQR 136
Query: 127 VKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVL 185
++L G ++ + VTG V A+ G E G F V D L PQK L PL +VL
Sbjct: 137 IRLMG-KIDVHSVVTGAVCAVLGYEDGDGRFRVEDYLFYESGPQKPLKPLECS--PLLVL 193
Query: 186 VSGLNVGSGTSNPLQFQLLVDHITGHL---GDEKEQGIAAEIVHVVIAGNSIEI---PRG 239
+SGLN+GS + +LL I G+L G ++ AA +V VV+AGNS++ P+
Sbjct: 194 MSGLNLGSPNDFSMSMELLQQWIFGNLEGFGQSRDWE-AASVVRVVLAGNSVKASVKPKN 252
Query: 240 LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
LNG+ + + + L +K +D + +A V +D+MPG DPAN LPQQP+++C+FP
Sbjct: 253 NLNGR--PTTESADLLNAVKAVDTFVHNLAQSVNVDLMPGEFDPANHMLPQQPMHQCMFP 310
Query: 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPT 359
+ ++ +FR NP+ E+ LGTSGQ + D+ +YS+ + LE ++ TL W H+APT
Sbjct: 311 KAVSFTSFRGVPNPYAMEIAGRSILGTSGQNVHDIARYSKIENPLEALKSTLIWSHIAPT 370
Query: 360 APNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVA 419
AP+TL CYP+ +DPF++ CPHVYFAGN +F T L KGS+ Q RL+C+P FSET
Sbjct: 371 APDTLPCYPYYQQDPFVISECPHVYFAGNTGEFRTELWKGSNGQQTRLICVPSFSETDSV 430
Query: 420 VVVNLKNLECHTLSF 434
VVNL+ L+C + F
Sbjct: 431 AVVNLRTLDCQQICF 445
>gi|298711679|emb|CBJ32730.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 508
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/456 (38%), Positives = 268/456 (58%), Gaps = 38/456 (8%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHLP 63
G+E R + Y + F ++K+++ QQ+S +Y RL ++ A+ + W
Sbjct: 31 GDELGAPRVELAYEPRYQRFIVKKKSFT-QQFSHVYNKRLLALKGAVRQAAEKRWGKEGE 89
Query: 64 ------ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKP-HNFMHPD 115
+ ++ + EG E V+IGT YK MKL+PSIL+E+ ++R + +V P +F D
Sbjct: 90 GGGVKFVDRLVNMREGDEWVVIGTTYKAMKLRPSILNEFREDRGISMAVVAPVGSFTSED 149
Query: 116 DHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL 175
D LVLEDESGRV + G + S+ V+G+V+A+ G T++GE LV D AG+
Sbjct: 150 DSLVLEDESGRVSISGPGIQSSSLVSGLVIAVKGTVTASGEMLVDDWCPAGI-------- 201
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGD-EKEQGIAAEIVHVVIAGNSI 234
V S G +PL LLVD + G+LG E ++G +A I V++ G+S+
Sbjct: 202 -----PPPVPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSV 256
Query: 235 EIPRG-LLNG----QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
P LL+G + L ++ Q + P+KELD +L +AA P+D+MPG +DPAN++LP
Sbjct: 257 AAPSAELLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLP 316
Query: 290 QQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----SEANDQ-- 343
QQPL+ CL ++ + + TNPH ++ FLG+SGQ + D+ +Y +EA+
Sbjct: 317 QQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAK 376
Query: 344 ---LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS 400
L +E L+WRH+APTAP TLGCYPF DPF+VE CP ++FAGNQ +F T +L+G+
Sbjct: 377 PACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSILEGA 436
Query: 401 DRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
D R+VC+P F+ TG A ++NL++LEC L+F +
Sbjct: 437 DGHKGRVVCVPAFAATGQAALLNLESLECTPLNFSS 472
>gi|383853211|ref|XP_003702116.1| PREDICTED: DNA polymerase delta small subunit-like [Megachile
rotundata]
Length = 444
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 176/442 (39%), Positives = 260/442 (58%), Gaps = 13/442 (2%)
Query: 1 MEIDGEEARLQ---RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN 57
M ++ E + Q RKQA Y L + F K Y +Q++ IY +RL +R++L V +
Sbjct: 9 MSVESENEKPQVFDRKQAQYTDLSKKFVNTKNDY-SKQFAHIYASRLAELRSVLIPRVQS 67
Query: 58 WKPHLPICTVLELE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD 115
++PI + ELE EGRECVIIGTLYKH + KPSIL E S++ + ++
Sbjct: 68 KWGNIPIVKLAELENLEGRECVIIGTLYKHQQWKPSILRELSEDHQLSLPSSKSDYCSEK 127
Query: 116 DHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL 175
D LEDE R+KL G E+ VTG+V A+ GKE + G F+V + AP KE
Sbjct: 128 DQPFLEDEMLRIKLVGEEVDLKQIVTGVVCAVLGKENNDGTFMVKEWCFPDCAP-KESVT 186
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
N + VVLVSGL++ S S L+ L ++ + G G+ Q + IV +VIAGN+++
Sbjct: 187 NCTSEGKVVLVSGLDL-STNSKSLEINLFMEWLCGMAGNSIVQKDSTSIVRLVIAGNTVK 245
Query: 236 IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
L + + +K+ + E IK D L+ +A + +MPG DP N LPQ+PL+
Sbjct: 246 RNDTLHSETDTLAKE---IGEAIKTTDEFLSTLATCCCITLMPGEYDPTNAMLPQRPLHP 302
Query: 296 CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSE--ANDQLEFMERTLRW 353
CL P S+ +F+S TNP +++ +GTSGQ+I D+ K + +E++ERTL W
Sbjct: 303 CLLPKSSKLESFKSTTNPWIGKVEERIIIGTSGQSIKDIIKATGEIGISPIEWLERTLLW 362
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKF 413
RH+ PTAP+TL P+ ++D F+++ CP +YF GN KFET+L KG ++++VRL+ +P F
Sbjct: 363 RHMCPTAPDTLLACPYYEKDLFIMKECPDIYFVGNTDKFETKLWKGENKKMVRLISVPCF 422
Query: 414 SETGVAVVVNLKNLECHTLSFG 435
S T AV+VNLKNL+ + FG
Sbjct: 423 STTHTAVIVNLKNLDTQYICFG 444
>gi|158299560|ref|XP_319657.4| AGAP008910-PA [Anopheles gambiae str. PEST]
gi|157013576|gb|EAA14861.4| AGAP008910-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 176/442 (39%), Positives = 258/442 (58%), Gaps = 20/442 (4%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLY-SLVPNWKPHLPI 64
E +R + Y + E + K+ + +Q++ IY +RL M LL S+ W +PI
Sbjct: 15 EGGAFERLKVPYTYRSECYHFAKKDF-SKQFAFIYASRLEEMLKLLEDSVQKKWGTEMPI 73
Query: 65 CTVLELEEG--RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED 122
+ +L E +CVIIGTL+KH +LKPSIL E S+E P ++ + +D L+LED
Sbjct: 74 KRLADLREDCPHKCVIIGTLFKHQELKPSILREISEENQLAPQPPRSHYTNDNDILILED 133
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGK---ETSAGEFLVLDVLDAGLAPQKELP-LNSG 178
R+KL G ++ + VTG+V A+ GK E S G F V D + A QKELP L +
Sbjct: 134 ALQRIKLVG-KIDVHSIVTGVVCAVMGKFWYEESDGRFFVEDYIFYQGALQKELPPLQTS 192
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHL-----GDEKEQGIAAEIVHVVIAGNS 233
+VL+SGLN + +LL + G+L G + E AA IV +VIAGNS
Sbjct: 193 --PLLVLISGLNESAANDFSTPLELLQQWVFGNLEGLLDGHDWE---AASIVRIVIAGNS 247
Query: 234 IEI-PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
++ P+ + + + + L +K +D L+ +A VP+D+MPG DPAN LPQQP
Sbjct: 248 VKASPKPKNHHSSKVTTETDALLGAVKTVDSLIHNLAQSVPIDLMPGEFDPANHMLPQQP 307
Query: 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLR 352
++ CLFP S + +FR NP+ F+L + +GTSGQ + D+ +YS+ LE ++ TLR
Sbjct: 308 MHHCLFPRSKGFASFRGVPNPYAFDLADRYVVGTSGQNVLDVMRYSKIESPLEALKATLR 367
Query: 353 WRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPK 412
W HL PTAP+TL CYP+ ++DPF++ CPHVYFAGN +F T + G+ Q RLVC+P
Sbjct: 368 WGHLIPTAPDTLPCYPYYEKDPFIIGECPHVYFAGNVGEFSTEMWTGAGGQQTRLVCVPS 427
Query: 413 FSETGVAVVVNLKNLECHTLSF 434
F+++ VVNL+ +EC +SF
Sbjct: 428 FADSQSVAVVNLRTMECRKVSF 449
>gi|328872180|gb|EGG20547.1| DNA polymerase delta subunit 2 [Dictyostelium fasciculatum]
Length = 495
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/410 (40%), Positives = 250/410 (60%), Gaps = 17/410 (4%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
Q+++IY RL +R +L V P+ +L ++ G E +++GTLYK M LKP+IL
Sbjct: 70 QFNKIYTDRLEKLRPVLADKVAKIWKGTPVNKILHVKPGDEGILVGTLYKEMPLKPNILK 129
Query: 95 EYSKERSTTPL--VKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKET 152
+Y++ R+ PL K +++ D L+ EDE+GR+KL + + TG+ VA+ GK
Sbjct: 130 QYAENRAILPLPVKKVSSYISDADVLLFEDETGRIKLICDKSMVDGLPTGLNVAIRGKGL 189
Query: 153 SAGEFLVLDVLDAGLAPQKEL------PLNS--GEDKYVVLVSGLNVGSGTSNPLQFQLL 204
EF V +++ GL Q + P N +D YV L SGLN+G L LL
Sbjct: 190 PGAEFQVYEIITPGLPSQMFVTNGVHGPDNKDINDDVYVCLASGLNIGDPNCQ-LSNNLL 248
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSI-EIPRGLLNGQNLASKDQS----RLFEPIK 259
+D+ITG+LG +Q ++I ++IAGNSI + P L+ ++ ++ + +L PIK
Sbjct: 249 LDYITGNLGSPSDQKFVSKICRLIIAGNSIHKEPNQDLSTRSRTKQEATAKLQKLAVPIK 308
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELD 319
ELD++L+++ +P+DI+PG +DP+ SLPQ P N CLFP SA F TNP+ +
Sbjct: 309 ELDMILSEMCQSLPVDILPGESDPSIQSLPQLPFNACLFPFSAQNINFNPVTNPYESVIG 368
Query: 320 NVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES 379
FLGTSGQ I+++ KY + +LE ++ TL WRHLAPTAP+TL C P ++DPF++
Sbjct: 369 GKIFLGTSGQNIENISKYMNVSSKLELLQNTLEWRHLAPTAPDTLSCAPL-EQDPFIIVC 427
Query: 380 CPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
CPHVYF GN +FE++ ++G + + V +V +PKFSETG V+VNL+ LE
Sbjct: 428 CPHVYFMGNGDRFESKYIEGENGEQVCIVVVPKFSETGTVVLVNLRTLEA 477
>gi|328715058|ref|XP_001950214.2| PREDICTED: DNA polymerase delta subunit 2-like [Acyrthosiphon
pisum]
Length = 451
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/443 (37%), Positives = 253/443 (57%), Gaps = 15/443 (3%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPI 64
++ +R Y + F ++ Y +Q++ IY RL MR +L + W I
Sbjct: 9 DQTEFERSSFNYADMSSVFHLKDVNYT-RQFAHIYAHRLVQMRDILQEKIQQKWGERCDI 67
Query: 65 CTVLELEE--GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED 122
+ EL + G+EC+I+GTL+KH +LKPSIL E S+E + P +F+ D ++LED
Sbjct: 68 YKLSELHDKIGKECIIVGTLFKHQELKPSILKEISEENNLIPQPPRTHFVSDTDEIILED 127
Query: 123 ESGRVKL-----GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVL--DAGLAPQKELPL 175
E RV L G L + +TG ++A+ G G+F VLD A +
Sbjct: 128 ELQRVPLTFDGLNGNSLSLNNIMTGCIIAVKGIPQDGGKFDVLDFCWPTPSAAYKALTTR 187
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
+SG+D+++VL+SGL + + + Q QL VD I G LGD+KE ++IV V+IAGNSI
Sbjct: 188 SSGDDRFLVLISGLELATNIATHFQVQLFVDWINGLLGDKKENSKVSKIVQVLIAGNSIR 247
Query: 236 IPRGLLNGQNLASK--DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
+ N K D R + IK+LD LL Q+A+ V + IMPG DP + +LPQQ
Sbjct: 248 --STPMKKPNYRDKIDDFPRDIQAIKQLDDLLFQLASTVDVQIMPGEFDPTDRTLPQQAF 305
Query: 294 NRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRW 353
+RCLFP ++ Y++ TNP+ FE++ +G+SGQT+ D+ +++ D ++ M++ L W
Sbjct: 306 HRCLFPKASEYSSLHRVTNPNQFEIEGHLIIGSSGQTVQDVFRFTNLEDPIDIMDKILDW 365
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKF 413
H P+AP+T+ CYPF +DPF+++ P V+F NQQ F+T L + RL+ +P F
Sbjct: 366 GHQIPSAPDTIPCYPFEGQDPFIIKEMPDVFFVSNQQSFQTSLKTNGSGKPTRLISVPSF 425
Query: 414 SETGVAVVVNLKNLECHTLSFGT 436
S T +++NL NLECH +SF T
Sbjct: 426 SSTQTCILLNLNNLECHPVSFKT 448
>gi|430813520|emb|CCJ29133.1| unnamed protein product [Pneumocystis jirovecii]
Length = 439
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 166/429 (38%), Positives = 254/429 (59%), Gaps = 24/429 (5%)
Query: 27 QKETYRGQQYSQIYFARL-HLMRALLYSLVPNWKPHL-------PICTVLELEEGRECVI 78
+K TY+ QQY+ +YF RL H+ +++ NW + +L++ G C I
Sbjct: 8 KKRTYQ-QQYANMYFLRLVHIRPKIVHQAQQNWGDMVIKDWKVKRASRLLDIVHGEICWI 66
Query: 79 IGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD---DHLVLEDESGRVKLGGAELL 135
+GT+Y LKP+ILD+ K+ +V P N + D +++LEDE GR++L G+++L
Sbjct: 67 VGTVYVDAPLKPNILDDIKKDYW---MVGPKNEKYIDSTNSNVILEDEYGRIRLVGSKIL 123
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED--KYVVLVSGLNVGS 193
VTG V+ G E G F V+D+ L Q LP + D KYV LVSGLN+
Sbjct: 124 QEFLVTGCVIGALGFEIQNGNFEVIDLCFPELPNQISLPNRNNTDTHKYVALVSGLNITD 183
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253
TSN L LL +++ G +G + ++ +++IV +IAGNSI + N +
Sbjct: 184 KTSNLLPLFLLAEYLNGGIGHQVDRVASSQIVQFIIAGNSIALSETENTLTNKKKPFNAF 243
Query: 254 LF--EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY--NTFRS 309
++ +P + DI L+ I A + +MPG +DP+N LPQQP++ P + Y +T ++
Sbjct: 244 IYNSKPAEMFDIFLSNICATTSVILMPGESDPSNTLLPQQPIHFSFIPNAKHYYGSTLKT 303
Query: 310 CTNPHCFELDNV---RFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGC 366
TNP E+D V RFLG+SGQTI+D+ KY+ +++L ME TLRW+H APTAP+TL C
Sbjct: 304 STNPMWLEIDGVNFFRFLGSSGQTINDIYKYTNKHNKLSIMEYTLRWQHCAPTAPDTLWC 363
Query: 367 YPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
YPF ++DPF++ PHVYF GNQ++F T+ ++G + Q++RL+ +P FS+T V++NL
Sbjct: 364 YPFLEKDPFILSETPHVYFVGNQEEFNTKFIEGENGQIIRLIMLPVFSKTDTIVLLNLST 423
Query: 427 LECHTLSFG 435
LEC + F
Sbjct: 424 LECEEVKFS 432
>gi|157116364|ref|XP_001658441.1| DNA polymerase delta small subunit [Aedes aegypti]
gi|108876528|gb|EAT40753.1| AAEL007541-PA [Aedes aegypti]
Length = 458
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 174/438 (39%), Positives = 253/438 (57%), Gaps = 20/438 (4%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVL 68
+R Y+ + F + + + +Q+S IY +RL M L+ V W PI +
Sbjct: 18 FKRLDVAYVNKSDKFLFKSKDF-SKQFSHIYASRLSEMVGLVTERVKEKWGTEHPIKQLA 76
Query: 69 ELEEG--RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
EL+E +C+IIGTL+KH +LKPSIL E S+E P ++ D L+LED R
Sbjct: 77 ELKEDSPEKCIIIGTLFKHQELKPSILREISEENQLVPQPPRSHYTDDADILILEDALQR 136
Query: 127 VKLGGAELLPSAYVTGIVVALHG---KETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKY 182
++L G ++ + VTG V A+ G E G F V D L PQK L PL
Sbjct: 137 IRLMG-KIDVHSVVTGAVCAVLGVDSYEDGDGRFRVEDYLFYESGPQKPLKPLECS--PL 193
Query: 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHL---GDEKEQGIAAEIVHVVIAGNSIEI--- 236
+VL+SGLN+GS + +LL I G+L G ++ AA +V VV+AGNS++
Sbjct: 194 LVLMSGLNLGSPNDFSMSMELLQQWIFGNLEGFGQSRDWE-AASVVRVVLAGNSVKASVK 252
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
P+ LNG+ + + + L +K +D + +A V +D+MPG DPAN LPQQP+++C
Sbjct: 253 PKNNLNGR--PTTESADLLNAVKAVDTFVHNLAQSVNVDLMPGEFDPANHMLPQQPMHQC 310
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHL 356
+FP + ++ +FR NP+ E+ LGTSGQ + D+ +YS+ + LE ++ TL W H+
Sbjct: 311 MFPKAVSFTSFRGVPNPYAMEIAGRSILGTSGQNVHDIARYSKIENPLEALKSTLIWSHI 370
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
APTAP+TL CYP+ +DPF++ CPHVYFAGN +F T L KGS+ Q RL+C+P FSET
Sbjct: 371 APTAPDTLPCYPYYQQDPFVISECPHVYFAGNTGEFRTELWKGSNGQQTRLICVPSFSET 430
Query: 417 GVAVVVNLKNLECHTLSF 434
VVNL+ L+C + F
Sbjct: 431 DSVAVVNLRTLDCQQICF 448
>gi|170047774|ref|XP_001851385.1| DNA polymerase delta small subunit [Culex quinquefasciatus]
gi|167870072|gb|EDS33455.1| DNA polymerase delta small subunit [Culex quinquefasciatus]
Length = 455
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 171/440 (38%), Positives = 251/440 (57%), Gaps = 16/440 (3%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPI 64
E +R Q Y + + F + + ++ Q++ IY RL M L+ V + W P+
Sbjct: 15 EGGEFKRLQVPYQYRSDKFHFKTKDFK--QFAHIYATRLEEMVRLMKVRVEHKWGSKYPV 72
Query: 65 CTVLELEEG--RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED 122
+ +L+E +CV+IGTL+KH +LKPSIL E S+E P ++ D L+LED
Sbjct: 73 KQLADLKEDNPEQCVLIGTLFKHQELKPSILREISEENQLAPQPPRSHYTDDADILILED 132
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK- 181
R++L G +L + VTG+V A+ G E G F V + L PQK PL S E
Sbjct: 133 ALQRIRLFG-KLDVHSVVTGVVCAVRGYEDGDGRFHVEEYLFYEAGPQK--PLKSLESSP 189
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGD--EKEQGIAAEIVHVVIAGNSIEI--- 236
+VL+SGLN S L +LL + G+L + A+ +V V+IAGNSI+
Sbjct: 190 LIVLISGLNQSSPNDMSLSMELLQQWLFGNLEGFGQSRDWEASSVVRVIIAGNSIKASSK 249
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
P+ L+ N + D + L +K +D + +A V +D+MPG DP+N LPQQP+++C
Sbjct: 250 PKSSLH--NRPANDSTDLLNAVKSVDSFVHNLAQSVNVDLMPGEFDPSNHMLPQQPMHQC 307
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHL 356
+FP S + +FR NP+ FE+ +GT+GQ + D+ +YS+ LE +E TL W HL
Sbjct: 308 MFPRSIPFQSFRGVPNPYAFEIAGRLIVGTAGQNVHDIARYSKIESPLEALESTLIWSHL 367
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
APTAP+TL CYP+ +DPF+V CPHVYFAGN +F T+L +G + Q RLVC+P F++T
Sbjct: 368 APTAPDTLPCYPYYQQDPFIVAECPHVYFAGNVAEFGTKLWEGPEGQRTRLVCVPSFADT 427
Query: 417 GVAVVVNLKNLECHTLSFGT 436
VVNL+ L+C + F
Sbjct: 428 HTIAVVNLRTLDCQPVCFAV 447
>gi|340385463|ref|XP_003391229.1| PREDICTED: DNA polymerase delta subunit 2-like [Amphimedon
queenslandica]
Length = 506
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 171/447 (38%), Positives = 247/447 (55%), Gaps = 45/447 (10%)
Query: 33 GQQYSQIYFARLHLMRAL-LYSLVPNWK--------PHLPIC-------TVL----ELEE 72
G QY+QIY+ RLH M+ + + S W PH TV +LE
Sbjct: 28 GIQYNQIYYTRLHEMKDVSMKSAQRKWGKKKGSHFYPHTATLHYTTGSDTVFRNLKDLEP 87
Query: 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA 132
G CV+IGTL+K M L+PS + + S + P D + LED S RV L
Sbjct: 88 GLACVVIGTLFKEMSLRPSTIKQISDNQRLLPYPPKGKLSSSTDKIFLEDYSQRVILSNL 147
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS-GEDKYVVLVSGLNV 191
+A TG++VA+ G + + G F V D G+ P K PL S D+YV +VSGL V
Sbjct: 148 SD-NTALTTGMIVAVKGVQNADGNFEVSDYCLPGM-PLKNDPLPSLNNDRYVAIVSGLMV 205
Query: 192 GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251
GS S+ Q LVD++TG LG + + + IV V+IAGNSI + + + +
Sbjct: 206 GSDWSDQWAIQQLVDYLTGQLGGVHDNDMLSNIVKVIIAGNSIGSVQSNKSSDKVTEQHN 265
Query: 252 SRL----------------------FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
SR+ + ++ELD+ L+Q+++ VP+ +MPG DPAN LP
Sbjct: 266 SRIVIIIINDIEKVKYSAKNYCAHSIQSVEELDVTLSQLSSSVPVALMPGTYDPANKQLP 325
Query: 290 QQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMER 349
QQPL+ C+FP SA Y+ F+S TNP+ ++ +F+GT G+ I+ + + D LE +E
Sbjct: 326 QQPLHHCMFPKSAKYDNFKSVTNPYSCTIEGHKFIGTCGENIESMSCCTIGMDSLELLEL 385
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC 409
TL H+APTAP+ L CYPF++ DPF+++ CPHVYFAGNQ KF+++L+ G D Q V L+C
Sbjct: 386 TLMSSHVAPTAPDILCCYPFSNADPFIMDDCPHVYFAGNQPKFQSKLVTGDDGQKVLLIC 445
Query: 410 IPKFSETGVAVVVNLKNLECHTLSFGT 436
+P F+ T ++NL+ L C L+F T
Sbjct: 446 VPSFNSTHSLALINLRTLACTPLTFAT 472
>gi|340716985|ref|XP_003396970.1| PREDICTED: DNA polymerase delta small subunit-like [Bombus
terrestris]
Length = 448
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 170/431 (39%), Positives = 249/431 (57%), Gaps = 13/431 (3%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
+R+QA Y L + F K Y +QY+ IY ARL +R +L V ++PI + +
Sbjct: 24 FEREQADYKDLSKKFVNMKNDY-SKQYAHIYSARLAELRDVLTPRVKAKWGNVPIVKLAD 82
Query: 70 LE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
LE E ++C+IIGTLYKH + KPSIL E S+E N+ D LEDE R+
Sbjct: 83 LENLENQQCIIIGTLYKHQQWKPSILRELSEEHQFNVSCSKPNYCSEKDQPFLEDEMLRI 142
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
KL G ++ VTG+V A+ G E S G F V D G AP++ L K +V+VS
Sbjct: 143 KLVGEQVDLKQIVTGVVCAVLGNENSDGAFTVKDWCFPGCAPKESLK-ECISQKKLVIVS 201
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GLN+ + N L L ++ + G G+ Q A IV ++IAGN+I+ N + A
Sbjct: 202 GLNLSNNCDN-LGMSLFMEWLCGMAGNVTIQKDNASIVRLIIAGNTIKS-----NDTSQA 255
Query: 248 SKDQSR-LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT 306
+ D ++ L E IK +D L+ +A + +MPG +DP N LPQ+P + CL P S+ +
Sbjct: 256 ATDIAKGLGEAIKSVDTFLSNLATCCSITLMPGEHDPTNSMLPQRPFHPCLLPKSSRLES 315
Query: 307 FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN--DQLEFMERTLRWRHLAPTAPNTL 364
F+S TNP +++ GTSGQ+I D+ K + LE++E+TL WRH+ PTAP+TL
Sbjct: 316 FKSTTNPWISKIEGRIITGTSGQSIQDIIKVAGETGISALEWLEKTLLWRHICPTAPDTL 375
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNL 424
P+ +D F++E+CP +YF GN KFET+L KG + Q+VRL+ +P+F + AV+VNL
Sbjct: 376 LACPYYKKDLFIMETCPDIYFVGNTDKFETKLWKGDENQIVRLISVPRFDTSQTAVIVNL 435
Query: 425 KNLECHTLSFG 435
+NL+ +SF
Sbjct: 436 ENLDTQYISFS 446
>gi|328789052|ref|XP_001121190.2| PREDICTED: DNA polymerase delta small subunit-like [Apis mellifera]
Length = 443
Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 165/430 (38%), Positives = 251/430 (58%), Gaps = 16/430 (3%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
+RK+A Y L E F I K Y +Q++ IY ARL +R +L V ++PI + +
Sbjct: 24 FERKRAQYKDLSEKFAITKSDY-SKQFAHIYSARLAELRDILIPRVQTKWENIPIIKLAD 82
Query: 70 LE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
LE EG++C++IGTLYKH + KPSIL E S++ + ++ D LEDE R+
Sbjct: 83 LENLEGQQCILIGTLYKHQQWKPSILRELSEDHQLSLSCSKSDYCSEKDQSFLEDEMLRI 142
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
KL G ++ VTG+V A+ G E S G F+V D G AP++ L + + K +V+VS
Sbjct: 143 KLVGNQVNLKQIVTGVVCAVLGNENSDGTFMVKDWCFPGCAPKEPLKEHISQKK-LVIVS 201
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL++ S L L + + G GD Q IV ++I+GN I +N
Sbjct: 202 GLDL-SNNYKSLGITLFCEWLCGMAGDTTIQKDNTSIVRLIISGNII---------KNSD 251
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
+ S E IK +D L+ +A + +MPG +DP N LPQ+P + CL P S+ + F
Sbjct: 252 IINTSTKLEEIKIVDTFLSNLAMCCNITLMPGEHDPTNAMLPQKPFHPCLLPKSSRFENF 311
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWRHLAPTAPNTLG 365
+S TNP +++ +GTSGQ+I+D+ K + D LE++E++L WRH+ PTAP+TL
Sbjct: 312 KSTTNPWIGKIEGRIIIGTSGQSIEDIIKVTGETDISPLEWLEKSLLWRHMCPTAPDTLL 371
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLK 425
P+ ++D F+++ CP +YF GN KFET+L KG + Q+VRL+ +P+F+ T AV+V+L+
Sbjct: 372 ACPYYEKDLFIIKKCPDIYFIGNTDKFETKLWKGEENQIVRLISVPRFNMTCTAVIVDLE 431
Query: 426 NLECHTLSFG 435
NL+ +SFG
Sbjct: 432 NLDTQYISFG 441
>gi|301095655|ref|XP_002896927.1| DNA polymerase alpha/epsilon subunit B, putative [Phytophthora
infestans T30-4]
gi|262108574|gb|EEY66626.1| DNA polymerase alpha/epsilon subunit B, putative [Phytophthora
infestans T30-4]
Length = 458
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/455 (36%), Positives = 264/455 (58%), Gaps = 31/455 (6%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP-HLPI-CTV 67
+ R Y + F +++++Y QQ+S IY +RL +R ++ V +P+ V
Sbjct: 7 ISRHSVEYTPTYQRFVLKQKSY-AQQFSHIYVSRLQQLRDVVSVQVQEHTAGRIPVLAKV 65
Query: 68 LELE-EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESG 125
++L+ +G+ECV+IGTL K ++ KP I D + E P+ DD L+LEDESG
Sbjct: 66 IDLKADGQECVLIGTLLKVLEAKPDIFDALTSESGVKPIETIGRPLATKDDELLLEDESG 125
Query: 126 RVKLGGAELLPSAYVTGIVVALHGK---ETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY 182
RV+L G + + +VTG+V+ + G+ + G FLV +V PQ LP E +Y
Sbjct: 126 RVQLVG-NIDVARFVTGVVLGVRGRVARDGPDGHFLVEEVYLPSFPPQHPLP-ERQESEY 183
Query: 183 VVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP-RGL 240
V LVSGLN+G P++ +L+D++ G LGD E+ ++IV V+ GN I+
Sbjct: 184 VALVSGLNIGRNKDRQPIRNHVLMDYLAGRLGDGNEREFVSKIVRTVVVGNVIQATGSDE 243
Query: 241 LNGQNLASKDQSRLF---EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
+ + K +L EP++ D L++ +AA + +D+MPG +DP+N++LPQQ + CL
Sbjct: 244 VQVPTIKRKTAEQLALEGEPLRNADELVSTLAAAMCVDLMPGASDPSNYTLPQQSFHPCL 303
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTI-------------DDLQKYSEANDQ- 343
FP S+ + +FR TNP+ ++ V+ G SGQ + +D + +E +Q
Sbjct: 304 FPRSSHFQSFRCVTNPYEAQVGGVQLFGDSGQPLHSMLQCTLPKRDDNDEKMATEEQEQE 363
Query: 344 --LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSD 401
L+++ER + WRH APTAP+ L C+P + DPF++E+CPHVYF+GNQ +F TRL+KG
Sbjct: 364 RALDYLERCVEWRHAAPTAPDILACFPMANEDPFILETCPHVYFSGNQPRFSTRLVKGGK 423
Query: 402 RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
Q VRL+ +P FSET V+V+LK+L C ++ G
Sbjct: 424 DQQVRLITVPSFSETSTIVIVDLKDLSCFPITIGA 458
>gi|194747040|ref|XP_001955962.1| GF24834 [Drosophila ananassae]
gi|190623244|gb|EDV38768.1| GF24834 [Drosophila ananassae]
Length = 432
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 166/436 (38%), Positives = 237/436 (54%), Gaps = 17/436 (3%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLE 69
QR++ Y L F ++ Y+ +Q+ +Y RL M LL L W PI + E
Sbjct: 3 QRRETNYENLSAQFRLKAHDYQ-KQFCHLYAHRLAEMTRLLSPLAQEKWGRQEPIKKLCE 61
Query: 70 L--EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
L E+ C++IGT+YKH KPSIL + S+E P N+ P+D +VLEDE RV
Sbjct: 62 LRGEQDVHCILIGTIYKHQAHKPSILRDISEENQLAPQPPRQNYSEPEDKVVLEDELQRV 121
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
+L G L TG+V A+ G S G F V D+L PQK L + + +VLVS
Sbjct: 122 RLQGELLQSQLMATGVVCAVLGGTDSEGFFNVEDMLYYESGPQKPLKAKNS-SRLLVLVS 180
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLL 241
GL+ + L + G G+ KE G +V +++AGNS+ +P +
Sbjct: 181 GLDQLQAHTFADALNLFQYWLAGSFGNGKEAG---SMVRLIVAGNSVRASAVAHVPTLQV 237
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + + +LD A +P+DI+PG DPANF LPQQP ++C+FP +
Sbjct: 238 ARTQANAND---TVQAVTQLDKWFAAWARSLPVDILPGAYDPANFMLPQQPFHKCMFPEA 294
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
A ++F++ TNP+ LD LGT+GQ + DL + + + LE + TL+W H+APTAP
Sbjct: 295 AKLSSFQAVTNPYSCRLDETLVLGTAGQNVSDLLRSTSLSSALEALRCTLKWGHVAPTAP 354
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ D DPF++ CPHVYFAGN FET L + S Q RLVC+P FS T V
Sbjct: 355 DTLACYPYIDSDPFILRECPHVYFAGNCDSFETDLHESSSGQRTRLVCVPSFSRTQSVAV 414
Query: 422 VNLKNLECHTLSFGTQ 437
V+L+ L C ++F +
Sbjct: 415 VDLETLACRQVNFSVE 430
>gi|452823828|gb|EME30835.1| DNA polymerase delta subunit 2 [Galdieria sulphuraria]
Length = 454
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 176/448 (39%), Positives = 261/448 (58%), Gaps = 32/448 (7%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICT-V 67
+ R+ Y PF + Y QQYSQIYF RL +R ++ + N W + +
Sbjct: 11 MYRQTVDYEEEHNPFLLHSRNY-SQQYSQIYFCRLAALRPVVENAARNKWTDGILFRDRL 69
Query: 68 LELEEGRECVIIGTLYKHMKLKPSILDEYSKERST-TPL--VKPHNFMHPDDHLVLEDES 124
L L++G CVIIG +YK M LKPSIL EYSK + P+ VKP +F+ D ++LEDE+
Sbjct: 70 LHLQQGDNCVIIGVIYKEMDLKPSILKEYSKNPAEPVPILPVKP-SFVSDSDVVILEDET 128
Query: 125 GRVKLG------GAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG 178
GR++L G +L +TG VVA+ G+ETS+G+F V ++ G+ P K +P +
Sbjct: 129 GRIRLNFDRCCLGVNIL----LTGTVVAVKGQETSSGDFSVDELCFPGIPPLK-VPRSLD 183
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI---- 234
D +++ VSG+ +G+ + ++ + +D ITG LG+E++ ++I H+ + GN +
Sbjct: 184 NDIFILFVSGIGLGAPWNVSMREAMFLDFITGKLGNEEDYHFCSQIGHLFVLGNLLSSAG 243
Query: 235 -EIPRGLLNGQNLASKDQSRLF--EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
E N Q + Q +LF EP+ D LT +++ +P+ ++PG DP N LPQQ
Sbjct: 244 DETLANKSNDQQTVNSAQ-QLFNAEPLISADRFLTTLSSTIPVTLLPGEADPTNLLLPQQ 302
Query: 292 PLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS-----EANDQLEF 346
PL+ L P S+ YN+FR TNP+ ++ + L SGQ IDD +YS ++L
Sbjct: 303 PLHHSLLPSSSKYNSFRRVTNPYQCCINGRKILVCSGQNIDDACRYSTWDWNSVENRLTV 362
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVR 406
ME L +RHL PTAP+TL CYP+ D DPF+++ CPHVY AGNQ + TRL+ +D VR
Sbjct: 363 MENMLSFRHLCPTAPDTLPCYPYYDEDPFVLKECPHVYVAGNQHAYGTRLINANDCG-VR 421
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSF 434
L+CIP FS TG V++NL+ L + F
Sbjct: 422 LLCIPDFSTTGQVVLLNLRTLTPQVMEF 449
>gi|307192428|gb|EFN75644.1| DNA polymerase delta small subunit [Harpegnathos saltator]
Length = 459
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 174/440 (39%), Positives = 246/440 (55%), Gaps = 19/440 (4%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYS-LVPNWKPHLPICTVL 68
QR+ A Y L + K +Q+ IY RL +R +L S +V W + I +
Sbjct: 25 FQRQHAQYEDLTADLK-NKSVDFSKQFCYIYAVRLAELREILISQVVAKWG-DIRILKLA 82
Query: 69 ELE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
ELE EG+ECVIIGTLYKH K KPSIL E S++ T L N+ D L LEDE R
Sbjct: 83 ELEDFEGQECVIIGTLYKHQKSKPSILQELSEDHQLTLLEPKPNYCSEKDQLFLEDEMLR 142
Query: 127 VKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL--PLNSGEDKYVV 184
+KL YVTG+V A+ G + G F + + G P+ L P + G+ +V
Sbjct: 143 IKLMVDIADLKNYVTGVVCAVLGYKEKDGTFAIKEWCFPGCIPRSLLVSPQSKGK---LV 199
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR------ 238
+SGL++ S N L LL + I G GD Q A I+ V+IAGNS++
Sbjct: 200 FLSGLDLASSFEN-LSLNLLTEWICGMAGDATMQEDATCIIRVIIAGNSVKTVTKTNTLI 258
Query: 239 GLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
G G+ + + K +D L +IA + +MPG +DP N LPQ PL+ C+
Sbjct: 259 GHAEGKAQVTAITKEVAAATKRVDAFLIEIAKCCCITLMPGQHDPTNAMLPQMPLHSCVI 318
Query: 299 PGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWRHL 356
P ++ Y +F+ TNP ++ +G+SGQ I+D+ K + A D LE++ERTL WRH+
Sbjct: 319 PQTSRYRSFKGATNPWIGKVAERLIMGSSGQPIEDIAKATGATDISSLEWLERTLLWRHM 378
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
PTAP+TL +P+ +RDPF++ CP +YF GN KFET+L KG Q+VRL+CIP+FS T
Sbjct: 379 CPTAPDTLPVHPYFERDPFIINHCPDIYFVGNTAKFETKLWKGEGDQIVRLICIPQFSST 438
Query: 417 GVAVVVNLKNLECHTLSFGT 436
AV V++++LE ++ FGT
Sbjct: 439 HTAVTVDIESLETKSVCFGT 458
>gi|350408749|ref|XP_003488499.1| PREDICTED: DNA polymerase delta small subunit-like [Bombus
impatiens]
Length = 448
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 169/431 (39%), Positives = 248/431 (57%), Gaps = 13/431 (3%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
+R+QA Y L + F K Y +QY+ IY ARL +R +L V ++PI + +
Sbjct: 24 FEREQADYKDLSKKFVNMKSDY-SKQYAHIYSARLAELRDVLTPRVKAKWGNVPIVKLAD 82
Query: 70 LE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
LE E ++C+IIGTLYKH KPSIL E S+E N+ D LEDE R+
Sbjct: 83 LENLENQQCIIIGTLYKHQPWKPSILRELSEEHQFNVSCSKPNYCSEKDQPFLEDEMLRI 142
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
KL G ++ VTG+V A+ G E S G F+V D G AP++ L K +V+VS
Sbjct: 143 KLVGEQVDLKQIVTGVVCAVLGNENSDGTFMVKDWCFPGCAPKESLK-ECISQKKLVIVS 201
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GLN+ S + L L ++ + G G+ Q IV ++IAGN+I+ N + A
Sbjct: 202 GLNL-SNNCDSLGISLFMEWLCGMAGNVTIQKDNTSIVRLIIAGNTIKN-----NDTSQA 255
Query: 248 SKDQSR-LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT 306
+ D ++ L E IK +D L+ +A + +MPG +DP N LPQ+P + CL P S+ +
Sbjct: 256 ATDIAKGLGEAIKSVDTFLSNLATCCSITLMPGEHDPTNAMLPQRPFHPCLLPKSSRLES 315
Query: 307 FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN--DQLEFMERTLRWRHLAPTAPNTL 364
F+S TNP +++ GTSGQ+I D+ K + LE++E+TL WRH+ PTAP+TL
Sbjct: 316 FKSTTNPWISKIEGRIITGTSGQSIRDIIKVAGETGISALEWLEKTLLWRHVCPTAPDTL 375
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNL 424
P+ +D F++E+CP +YF GN KFET+L KG + Q+VRL+ +P+F + AV+VNL
Sbjct: 376 LACPYYKKDLFIMETCPDIYFVGNTDKFETKLWKGDENQIVRLISVPRFDTSQTAVIVNL 435
Query: 425 KNLECHTLSFG 435
+NL+ +SF
Sbjct: 436 ENLDTQYISFS 446
>gi|301095643|ref|XP_002896921.1| DNA polymerase alpha/epsilon subunit B, putative [Phytophthora
infestans T30-4]
gi|262108568|gb|EEY66620.1| DNA polymerase alpha/epsilon subunit B, putative [Phytophthora
infestans T30-4]
Length = 473
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/463 (36%), Positives = 267/463 (57%), Gaps = 32/463 (6%)
Query: 2 EIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP- 60
E+ G +++ QA + + ++QK QQ+S IY +RL +R ++ V
Sbjct: 15 EVVGFYDSVKKNQAVMSWDSKIHDVQKSY--AQQFSHIYVSRLQQLRDVVSVQVQEHTAG 72
Query: 61 HLPI-CTVLELE-EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDH 117
+P+ V++L+ +G+ECV+IGTL K ++ KP I D + E P+ DD
Sbjct: 73 RIPVLAKVIDLKADGQECVLIGTLLKVLEAKPDIFDALTSESGVKPIETIGRPLATKDDE 132
Query: 118 LVLEDESGRVKLGGAELLPSAYVTGIVVALHGK---ETSAGEFLVLDVLDAGLAPQKELP 174
L+LEDESGRV+L G + + +VTG+V+ + G+ + G F V +V PQ LP
Sbjct: 133 LLLEDESGRVQLVG-NIDVARFVTGVVLGVRGRVARDGPDGHFHVEEVYLPSFPPQHPLP 191
Query: 175 LNSGEDKYVVLVSGLNVGSGTSN-PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
E +YV LVSGLN+G + P++ +L+D++ G LGDE E+ ++IV V+ GN
Sbjct: 192 -ERQESEYVALVSGLNIGRNKDHQPIRNHVLMDYLAGRLGDENEREFVSKIVRTVVVGNV 250
Query: 234 IEIP-RGLLNGQNLASKDQSRLF---EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
I+ + + K +L EP++ D L++ +AA + +D+MPG +DP+N++LP
Sbjct: 251 IQATGSDEVQVPTIKRKTAEQLALEGEPLRNADELVSTLAAAMCVDLMPGASDPSNYTLP 310
Query: 290 QQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTI-------------DDLQK 336
QQ + CLFP S+ + +FR TNP+ ++ V+ G +GQ + +D +
Sbjct: 311 QQSFHPCLFPRSSHFQSFRCVTNPYEAQVGGVQLFGDAGQPLHSMLQCTLPKRDDNDEKM 370
Query: 337 YSEANDQ---LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFE 393
+E +Q L+++E + WRH APTAP+ L C+P + DPF++E+CPHVYF+GNQ +F
Sbjct: 371 ATEEQEQERALDYLELCVEWRHAAPTAPDILACFPMANEDPFILETCPHVYFSGNQPRFS 430
Query: 394 TRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
TRL+KG Q VRL+ +P FSET V+V+LK+L C ++ G
Sbjct: 431 TRLVKGGKDQQVRLITVPSFSETSTIVIVDLKDLSCFPITIGA 473
>gi|380018199|ref|XP_003693022.1| PREDICTED: DNA polymerase delta small subunit-like [Apis florea]
Length = 444
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 254/430 (59%), Gaps = 15/430 (3%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
+RK+A Y L E F I + Y +Q++ IY ARL +R +L V ++PI + +
Sbjct: 24 FKRKRAQYKDLSEKFAITRSDY-SKQFAHIYSARLAELRDILIPRVQTKWENVPIIKLAD 82
Query: 70 LE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
LE EG++C++IGTLYKH + KPSIL E S++ + ++ D LEDE R+
Sbjct: 83 LENLEGQQCILIGTLYKHQQWKPSILRELSEDHQLSLSCSKSDYCSEKDQSFLEDEMLRI 142
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
KL G ++ VTG+V A+ G E + G F+V D G AP++ L + + K +V+VS
Sbjct: 143 KLVGDQVNLKQIVTGVVCAILGNENNDGTFMVKDWCFPGCAPKESLKEHISQKK-LVIVS 201
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL++ S L L ++ + G G+ Q IV ++IAGN I ++N
Sbjct: 202 GLDL-SNNYKSLGISLFLEWLCGMAGNTTIQKDNTSIVCLIIAGN-ITKSSDIMNTN--- 256
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
++L + IK +D L+ +A + +MPG +DP N LPQ+P + CL P S+ + +F
Sbjct: 257 ----TKLGDIIKIVDTFLSNLAMCCNITLMPGEHDPTNAMLPQKPFHPCLLPKSSRFESF 312
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYS-EAN-DQLEFMERTLRWRHLAPTAPNTLG 365
+S TNP +++ +GTSGQ+I+D+ K + E N LE++E++L WRH+ PTAP+TL
Sbjct: 313 KSTTNPWIGKIEERIIIGTSGQSIEDIIKVTGETNISPLEWLEKSLLWRHMCPTAPDTLL 372
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLK 425
P+ ++D F+++ CP +YF GN KFET+L KG + Q+VRL+ +P+F T AV+V+L+
Sbjct: 373 ACPYYEKDLFIIKKCPDIYFVGNTNKFETKLWKGEENQIVRLISVPRFDMTYTAVIVDLE 432
Query: 426 NLECHTLSFG 435
NL+ +SF
Sbjct: 433 NLDTQYISFS 442
>gi|195125359|ref|XP_002007146.1| GI12543 [Drosophila mojavensis]
gi|193918755|gb|EDW17622.1| GI12543 [Drosophila mojavensis]
Length = 432
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/437 (37%), Positives = 240/437 (54%), Gaps = 19/437 (4%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSL-VPNWKPHLPICTVLE 69
+R Y L + + Y+ +Q+ +Y RL M LL L + W +PI + E
Sbjct: 3 KRLSCAYENLSSSYLLTTTDYQ-KQFCHLYTHRLAEMTRLLTPLALKEWGTQVPIMKLCE 61
Query: 70 L--EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
L E+ +C+IIGT+YKH KPSIL + S+E P + N+ P+D L+LEDE RV
Sbjct: 62 LRGEQNVQCIIIGTIYKHQAHKPSILRDISEENQLAPQPQRQNYSEPEDKLILEDELQRV 121
Query: 128 KLGGAELLPS-AYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLV 186
+L G E L S TGIV A+ G S G F V +L PQK PL + ++L+
Sbjct: 122 RLQGGEFLESHKLATGIVCAVKGDTDSEGFFNVEKILFLESGPQK--PLTVKRNSKLILI 179
Query: 187 SGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGL 240
SGL+ + + ++G ++ E A V +++AGNS+ +P
Sbjct: 180 SGLDQLQSHNFVDALNMFQYWLSGCFDNKSE---AQSQVRLIVAGNSVRSSAMAHVPTLQ 236
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
+ + D + I +LD A + +D+MPG DPANF LPQQP ++C+FP
Sbjct: 237 VARHQANANDT---VQAISQLDSWFASWAKAIHVDVMPGAYDPANFMLPQQPFHKCMFPL 293
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
+A ++F+S TNP+ LD+ +GT+GQ I DL + + + LE + TL+W H+APTA
Sbjct: 294 AAQLSSFQSVTNPYICRLDSALVVGTAGQNITDLLRSTALDSSLEALRCTLKWGHVAPTA 353
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TL CYP+ DPF+++ CPHVYFAGN +KFET L GS + RLVC+P FS+T
Sbjct: 354 PDTLACYPYISSDPFIMKECPHVYFAGNCEKFETDLHVGSGGKRTRLVCLPSFSKTQSVA 413
Query: 421 VVNLKNLECHTLSFGTQ 437
V++L L+C + F +
Sbjct: 414 VIDLATLDCRQIKFSVE 430
>gi|388580940|gb|EIM21251.1| hypothetical protein WALSEDRAFT_57598 [Wallemia sebi CBS 633.66]
Length = 508
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 259/462 (56%), Gaps = 31/462 (6%)
Query: 2 EIDGEEARLQRKQATYIFLDEPFEIQ--KETYRGQQYSQIYFARLHLMRALL-------Y 52
+ D E R++ L F+++ ++Y+ Q ++ +Y+ RL ++ L +
Sbjct: 11 DTDYNETRIKSNYDNLDELSSAFKVKHTNQSYQAQ-FASLYYLRLAKLKKLTQKRSIDKW 69
Query: 53 SLVP--NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHN 110
S +P + KP VL++++ + ++GT+Y MKLKP++LD+ ++
Sbjct: 70 SEIPGQSQKPKF-YSRVLDVDQNQLSYVVGTVYMDMKLKPNVLDDLARNHWVAAPEPTEK 128
Query: 111 FMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ 170
+D L LEDESGR+KL G +L S VTG+++ + G E GEF V+D+ G+ PQ
Sbjct: 129 IYSNNDELCLEDESGRIKLVGETILNSQLVTGVIIGVLGIEKDPGEFTVIDICYPGIPPQ 188
Query: 171 --KELPLNSGEDKYVVLVSGLNVGS-GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
K ++S + V LVSGL +GS + L Q+L+D ++G G EQ +++ I +
Sbjct: 189 PSKVSSMDSDKSPLVALVSGLKIGSQNADDALSRQMLIDFLSGQHGGPSEQKLSSRITRL 248
Query: 228 VIAGNSIEIPRGLLNGQNLA--SKDQSRLFE-PIKELDILLTQIAAGVPLDIMPGPNDPA 284
VIAGN + P ++ + +DQ+ P K+ D L +++ V +DI+PG DPA
Sbjct: 249 VIAGNCMSSPVAHVDDKKPKRFGQDQATFTSLPSKDFDNFLIELSDHVEVDILPGSVDPA 308
Query: 285 NFSLPQQPLNRCLFPGSATYNTFR----SC-TNPHCFELDNVRFLGTSGQTIDDLQKYSE 339
LPQQP + +F G+ +N+F +C TNP F +D+ RFL + GQT+DD KY
Sbjct: 309 GTLLPQQPFPKAMFKGA--FNSFEQGAINCHTNPTWFSVDDTRFLVSGGQTLDDSFKYIR 366
Query: 340 ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
D+L +L+WRH+APTAP+TL CYPFTDRDPF++ CPHV+ GNQ F + L+ G
Sbjct: 367 GQDRLGLAVDSLKWRHIAPTAPDTLWCYPFTDRDPFILSECPHVFVNGNQDSFASELVDG 426
Query: 400 S-----DRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
S + Q R+V +P+F+E+ +V+L L C T F +
Sbjct: 427 SLSIGPEGQQTRVVNLPEFTESSTIALVDLDTLSCETYKFSS 468
>gi|308809712|ref|XP_003082165.1| DPOD2_ORYSA DNA polymerase delta small subunit (ISS) [Ostreococcus
tauri]
gi|116060633|emb|CAL57111.1| DPOD2_ORYSA DNA polymerase delta small subunit (ISS) [Ostreococcus
tauri]
Length = 453
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 172/456 (37%), Positives = 252/456 (55%), Gaps = 44/456 (9%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHLPI 64
E AR R +T +E + + GQ Y Q+Y+ RL ++ + S W P+ P+
Sbjct: 6 ERARGTRDGST---TNEKYALTGRVDHGQYY-QLYYNRLMALKPRAVASARARW-PNAPV 60
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSK--ERST--TPLVKPHNFMHPDDHLVL 120
VLEL+E CV++GT+YK MK KP ILDEY K ER ++ N+ DD L
Sbjct: 61 RGVLELKEHEPCVVVGTVYKEMKDKPIILDEYVKDFEREVYEAKRIERGNYCREDDRLEF 120
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK----ELPLN 176
EDE RV++ G + +VTG+V A G+ TS GEF V D A AP + +
Sbjct: 121 EDEGARVRVLGVD--AGRFVTGVVCAFKGRATSKGEFEVEDA--AVFAPARGGEDAVTTA 176
Query: 177 SGEDKYVVLVSGLNVG---SGTSNPLQFQLLVDHITGHL---GDEKEQGIAAEIVHVVIA 230
G+ KYV LVSGL +G S N + Q+ VD++TG D AA I VV+A
Sbjct: 177 DGDAKYVCLVSGLELGGRGSSAENLARNQMFVDYVTGASVMDSDAASDCDAAHICQVVVA 236
Query: 231 GNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
G ++ + L+ ++ + +KELD++ T+IA+ VP+D+M G +DP N ++PQ
Sbjct: 237 GGTLNVNAPSLDD---STASAAASAAAVKELDLMFTEIASAVPVDVMSGKSDPTNKAMPQ 293
Query: 291 QPLNRCLFPGSATY-NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS----------- 338
QPL+ F + + T R TNPH F +DN+ FLGTSGQ +DD+ +S
Sbjct: 294 QPLHPVYFTEATRFEKTMRLATNPHEFSVDNISFLGTSGQNVDDVLTFSTIGADDVSSSF 353
Query: 339 ----EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET 394
A + + +TLRW+H+AP+AP+TL CYPF DRDPF++++ P VYFAG Q+ F
Sbjct: 354 SGDDAAKPAVAALSQTLRWQHVAPSAPDTLACYPFKDRDPFVIDTIPRVYFAGCQEAFGA 413
Query: 395 RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECH 430
+ +R +V +P+FS TG V+++++ LEC
Sbjct: 414 DRV-AHERGETLVVSVPRFSTTGCVVLIDVRTLECR 448
>gi|21064173|gb|AAM29316.1| AT27586p [Drosophila melanogaster]
Length = 431
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 236/434 (54%), Gaps = 20/434 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVS 187
L G +L TG+V A G S G F V D+L PQK L P+ + +VL S
Sbjct: 123 LQG-KLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIK--RSRLLVLAS 179
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLL 241
GL+ L + G LG+ KE G +V +++AGNS+ +P +
Sbjct: 180 GLDQLQAHKFVEALNLFQYWLAGSLGNNKEAG---SMVRLIVAGNSVRASAMAHVPTLQV 236
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + + +LD A +P+DIMPGP DPANF LPQQP ++C+FP +
Sbjct: 237 ARTQANANDT---VQAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQA 293
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
A TF++ TNP+ LD +GTSGQ + DL + + + LE + TL W H+APTAP
Sbjct: 294 AQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAP 353
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ D DPF++ CPHVY+AGN + F T L +GSD + RLVC+P FS+T V
Sbjct: 354 DTLACYPYIDSDPFILRECPHVYYAGNCESFATELHEGSDGKRTRLVCVPSFSKTQSVAV 413
Query: 422 VNLKNLECHTLSFG 435
V+L L+C ++F
Sbjct: 414 VDLDTLDCRIVNFS 427
>gi|195170791|ref|XP_002026195.1| GL16053 [Drosophila persimilis]
gi|194111075|gb|EDW33118.1| GL16053 [Drosophila persimilis]
Length = 431
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 161/435 (37%), Positives = 240/435 (55%), Gaps = 18/435 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R +++Y L + +++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RFESSYENLSSQYLLKEYNYQ-KQFCHLYAHRLAEMTRLLTPLAQKKWGKTEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT+YKH KPSIL + S+E P N+ P+D ++LEDE RV+
Sbjct: 63 RGEQDVHCILIGTIYKHQAHKPSILRDISEENQLAPQPPRQNYSEPEDKVILEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L G L TGIV A+ G + G F V DV+ PQK PL++ ++ +VLVSG
Sbjct: 123 LQGKMLQTQLMATGIVCAVLGGTDNEGFFNVDDVMYYESGPQK--PLSTIRNRLLVLVSG 180
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLLN 242
L+ + L ++G LG+ K+ A +V ++IAGNS+ +P +
Sbjct: 181 LDQLQAHTYVEALNLFQYWLSGSLGNGKD---AKSLVRLIIAGNSVRGSAVAHVPTLQVA 237
Query: 243 GQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSA 302
+ D + + +LD A +P+D+MPG DPANF LPQQP ++C+FP +A
Sbjct: 238 RSQANANDT---VQAVTQLDSWFASWAQCLPIDVMPGAYDPANFMLPQQPFHKCMFPQAA 294
Query: 303 TYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPN 362
+F++ TNP+ LD+ +GT+GQ + DL + + LE + TL W H+APTAP+
Sbjct: 295 QLTSFQAVTNPYNCRLDDALIVGTAGQNVADLLRSTSMESSLEALRCTLTWGHVAPTAPD 354
Query: 363 TLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
TL CYP+ + DPF++ CPHVYFAGN + FET L S+ + LVC+P F +T VV
Sbjct: 355 TLACYPYIENDPFIMRECPHVYFAGNCEAFETALHVTSEGKRTCLVCVPSFGKTKSVAVV 414
Query: 423 NLKNLECHTLSFGTQ 437
+L L C +SF +
Sbjct: 415 DLDTLSCRQISFSVE 429
>gi|125976758|ref|XP_001352412.1| GA11341 [Drosophila pseudoobscura pseudoobscura]
gi|54641158|gb|EAL29908.1| GA11341 [Drosophila pseudoobscura pseudoobscura]
Length = 431
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 161/435 (37%), Positives = 240/435 (55%), Gaps = 18/435 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R +++Y L + +++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RFESSYENLSSQYLLKEYNYQ-KQFCHLYAHRLAEMTRLLTPLAQKKWGKTEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT+YKH KPSIL + S+E P N+ P+D ++LEDE RV+
Sbjct: 63 RGEQDVHCILIGTIYKHQAHKPSILRDISEENQLAPQPPRQNYSEPEDKVILEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L G L TGIV A+ G + G F V DV+ PQK PL++ ++ +VLVSG
Sbjct: 123 LQGKMLQTQLMATGIVCAVLGGTDNEGFFNVDDVMYYESGPQK--PLSTIRNRLLVLVSG 180
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLLN 242
L+ + L ++G LG+ K+ A +V ++IAGNS+ +P +
Sbjct: 181 LDQLQAHTYVEALNLFQYWLSGSLGNGKD---AKSLVRLIIAGNSVRGSAVAHVPTLQVA 237
Query: 243 GQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSA 302
+ D + + +LD A +P+D+MPG DPANF LPQQP ++C+FP +A
Sbjct: 238 RSQANANDT---VQAVTQLDSWFASWAQCLPIDVMPGAYDPANFMLPQQPFHKCMFPQAA 294
Query: 303 TYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPN 362
+F++ TNP+ LD+ +GT+GQ + DL + + LE + TL W H+APTAP+
Sbjct: 295 QLTSFQAVTNPYNCRLDDALIVGTAGQNVADLLRSTSMESSLEALRCTLTWGHVAPTAPD 354
Query: 363 TLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
TL CYP+ + DPF++ CPHVYFAGN + FET L S+ + LVC+P F +T VV
Sbjct: 355 TLACYPYIENDPFIMRECPHVYFAGNCEAFETALHVTSEGKRTCLVCVPNFGKTKSVAVV 414
Query: 423 NLKNLECHTLSFGTQ 437
+L L C +SF +
Sbjct: 415 DLDTLSCRQISFSVE 429
>gi|195336716|ref|XP_002034979.1| GM14443 [Drosophila sechellia]
gi|194128072|gb|EDW50115.1| GM14443 [Drosophila sechellia]
Length = 418
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 163/428 (38%), Positives = 232/428 (54%), Gaps = 21/428 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFCHLYAHRLAEMTRLLTPLAQKKWGSKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVS 187
L G EL TG+V A G S G F V D+L PQK L P+ + +VL S
Sbjct: 123 LQG-ELNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLTPIK--RSRLLVLAS 179
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL+ L + G LG+ KE G +V +++AGNS+ + N
Sbjct: 180 GLDQLQAHKFVDALNLFQYWLAGSLGNNKEAG---SMVRLIVAGNSVARTQANANDT--- 233
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
+ + +LD A +P+DIMPG DPANF LPQQP ++C+FP +A TF
Sbjct: 234 -------VQAVSQLDQWFASWARSLPVDIMPGAYDPANFMLPQQPFHKCMFPQAAQLATF 286
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
++ TNP+ LD +GTSGQ + DL + + + +E + TL W H+APTAP+TL CY
Sbjct: 287 QAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLHSAMEALRCTLTWGHVAPTAPDTLACY 346
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
P+ D DPF++ CPHVY+AGN + F T L +G++ + RLVC+P FS+T VV+L L
Sbjct: 347 PYIDSDPFILRECPHVYYAGNCESFATELHEGAEGKRTRLVCVPSFSKTQSVAVVDLDTL 406
Query: 428 ECHTLSFG 435
+C ++F
Sbjct: 407 DCRMVNFS 414
>gi|195435810|ref|XP_002065872.1| GK16535 [Drosophila willistoni]
gi|194161957|gb|EDW76858.1| GK16535 [Drosophila willistoni]
Length = 434
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/434 (37%), Positives = 239/434 (55%), Gaps = 18/434 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R +++Y L + ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 5 RVKSSYENLSGQYLVKAYDYQ-KQFCHLYAHRLAEMTRLLTPLAQKKWGTKEPIKKLCEL 63
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT+YKH KPSIL + S+E P N+ P+D ++LEDE RV+
Sbjct: 64 HAEQDIHCILIGTIYKHQVHKPSILRDISEENQLAPQPPRQNYSEPEDKVILEDELQRVR 123
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L G L TGIV A+ G + G F V DVL PQK LP + +VL SG
Sbjct: 124 LRGEHLTGQLMATGIVCAIIGVPDNDGFFNVEDVLYYESGPQKPLPTRQSSGRLLVLASG 183
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVH-VVIAGNSIE------IPRGLL 241
L+ + L ++G L + KE A+ H ++IAGNS+ +P L
Sbjct: 184 LDQLQSHNFADSLNLFQYWLSGSLDNAKE----AQSAHRLIIAGNSVRSSAVAHVPT-LQ 238
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ A+ +++ + +++LD A + +D+MPG DPANF LPQQP ++C+FP +
Sbjct: 239 VARTQANANET--VQAVQQLDSWFAAWARALYVDVMPGAFDPANFMLPQQPFHKCMFPQA 296
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
+ +F+S +NP+ LD+ +GT+GQ I DL++ + L+ + TL W H+APTAP
Sbjct: 297 SQLASFQSVSNPYSCRLDDALIVGTAGQNIADLKRSTTLESSLDALRCTLTWGHIAPTAP 356
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ D DPF++ CPH+YFAGN FET L GS+ + RLVC+P FS T V
Sbjct: 357 DTLACYPYIDSDPFIITECPHIYFAGNCDNFETELHVGSNGKRTRLVCVPSFSSTQSIAV 416
Query: 422 VNLKNLECHTLSFG 435
V+L L+C + F
Sbjct: 417 VDLDTLDCRQIDFS 430
>gi|195587048|ref|XP_002083277.1| GD13645 [Drosophila simulans]
gi|194195286|gb|EDX08862.1| GD13645 [Drosophila simulans]
Length = 431
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/434 (37%), Positives = 235/434 (54%), Gaps = 20/434 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFCHLYAHRLAEMTRLLTPLAQKKWGSKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVS 187
L G EL TG+V A G S G F V D+L PQK L P+ + +VL S
Sbjct: 123 LQG-ELNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLTPIK--RSRLLVLAS 179
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLL 241
GL+ L + G LG+ KE G +V +++AGNS+ +P +
Sbjct: 180 GLDQLQAHKFVEALNLFQYWLAGSLGNNKEAG---SMVRLIVAGNSVRASAMAHVPTLQV 236
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + + +LD A +P+DIMPG DPANF LPQQP ++C+FP +
Sbjct: 237 ARTQANANDT---VQAVSQLDQWFASWARSLPVDIMPGAYDPANFMLPQQPFHKCMFPQA 293
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
A TF++ TNP+ LD +GTSGQ + DL + + + +E + TL W H+APTAP
Sbjct: 294 AQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSAMEALRCTLTWGHVAPTAP 353
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ D DPF++ CPHVY+AGN + F T L +G++ + RLVC+P FS+T V
Sbjct: 354 DTLACYPYIDSDPFILRECPHVYYAGNCESFATELHEGAEGKRTRLVCVPSFSKTQSVAV 413
Query: 422 VNLKNLECHTLSFG 435
V+L L+C ++F
Sbjct: 414 VDLDTLDCRMVNFS 427
>gi|21358653|ref|NP_647659.1| CG12018 [Drosophila melanogaster]
gi|13431497|sp|Q9W088.1|DPOD2_DROME RecName: Full=DNA polymerase delta small subunit
gi|7292154|gb|AAF47566.1| CG12018 [Drosophila melanogaster]
Length = 431
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 236/434 (54%), Gaps = 20/434 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVS 187
L G +L TG+V A G S G F V D+L PQK L P+ + +VL S
Sbjct: 123 LQG-KLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIK--RSRLLVLAS 179
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLL 241
GL+ L + G LG+ KE G +V +++AGNS+ +P +
Sbjct: 180 GLDQLQAHKFVEALNLFQYWLAGSLGNNKEAG---SMVRLIVAGNSVRASAMAHVPTLQV 236
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + + +LD A +P+DIMPGP DPANF LPQQP ++C+FP +
Sbjct: 237 ARTQANANDT---VQAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQA 293
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
A TF++ TNP+ LD +GTSGQ + DL + + + LE + TL W H+APTAP
Sbjct: 294 AQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAP 353
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ + DPF++ CPHVY+AGN + F T L +GS+ + RLVC+P FS+T V
Sbjct: 354 DTLACYPYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAV 413
Query: 422 VNLKNLECHTLSFG 435
V+L L+C ++F
Sbjct: 414 VDLDTLDCRMVNFS 427
>gi|348674378|gb|EGZ14197.1| hypothetical protein PHYSODRAFT_254404 [Phytophthora sojae]
Length = 433
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 159/425 (37%), Positives = 250/425 (58%), Gaps = 40/425 (9%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP-HLPI-CTVLE 69
R+ Y + F +++++Y QQ+S IY +RL +R ++ V +P+ V++
Sbjct: 9 RRSVEYTPTYQRFVLKQKSY-AQQFSHIYVSRLQQLRDVVSVQVEERTGGRVPVLAKVID 67
Query: 70 LE-EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD-DHLVLEDESGRV 127
L+ +GRECV+IGTL K ++ KP + D + E TP+ K + D D L+LEDESGRV
Sbjct: 68 LKADGRECVLIGTLLKVLEAKPDLFDALTSETGVTPIEKIDKSLATDKDELLLEDESGRV 127
Query: 128 KL-GGAELLPSAYVTGIVVALHGK---ETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
+L GG ++ + VTG+V+ + G+ + G+F V +V PQ LP E +YV
Sbjct: 128 QLVGGIDV--ARLVTGVVLGVRGRVPRDGGGGQFFVEEVFLPSFPPQHPLP-ERQESEYV 184
Query: 184 VLVSGLNVGSGT-SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP-RGLL 241
LVSGL++G S PL+ +LVD++ G LGD+KE+ ++I V+ GN +E G +
Sbjct: 185 ALVSGLSIGRNKDSQPLKNHVLVDYLAGRLGDDKEKEFVSKIARTVVVGNVVEAAGDGEV 244
Query: 242 NGQNLASKDQSRLF---EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
+ K +L EP+K D L++ +AA + +D+MPGP+DP+N++LPQQ + CLF
Sbjct: 245 QVPTIKRKTAEQLALEGEPLKNADELVSTLAAAMCVDVMPGPSDPSNYTLPQQSFHPCLF 304
Query: 299 PGSATYNTFRSCTNPHCFELDNVRFLGTSGQ-----------------------TIDDLQ 335
P S+ + +FR TNP+ ++ V+F G +GQ T D+ +
Sbjct: 305 PRSSHFKSFRCVTNPYEAQVGGVQFFGDAGQPLHSMLQCTLPKGEGDGDGDADLTTDEDK 364
Query: 336 KYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+ +E L+++ER + WRH APTAP+ L C+P + DPF++E+CPHVYF+GNQ +F TR
Sbjct: 365 EKAEQERSLDYLERCVEWRHAAPTAPDILACFPMANEDPFILETCPHVYFSGNQPRFSTR 424
Query: 396 LLKGS 400
L+KG+
Sbjct: 425 LVKGT 429
>gi|307175177|gb|EFN65270.1| DNA polymerase delta small subunit [Camponotus floridanus]
Length = 460
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/442 (37%), Positives = 249/442 (56%), Gaps = 20/442 (4%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLY-SLVPNWKPHLPI 64
E ++Q + T F D+ + K Q+ IY RL ++A+L ++ W + I
Sbjct: 25 ERQQVQYEDLTVDFNDKLIDFSK------QFCHIYSVRLAELKAILIPRIIAKWG-KVKI 77
Query: 65 CTVLELE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED 122
+ ELE EG++CVI+GTLYKH K KPSIL E S++ T N+ D L LED
Sbjct: 78 LKLAELEDFEGQQCVIVGTLYKHQKWKPSILHELSEDYQLTLPELRSNYCSEKDQLFLED 137
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY 182
E R++L + YVTGIV A+ G + G F+V + G P+ L + K
Sbjct: 138 EMLRIRLLIEDAEMKNYVTGIVCAILGHKEKDGNFVVKEWCFPGCVPKSSLTQLKSKGKL 197
Query: 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR---- 238
+ L SGL++ + S L LL + I G G+ Q A IV ++IAGNS++
Sbjct: 198 LFL-SGLDLANN-SKSLSLGLLTEWICGMAGNAIVQENATCIVQIIIAGNSVKTVTKTNT 255
Query: 239 --GLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
G G+ + + + LD+ L +IA + +MPG +DP N LPQ+PL+ C
Sbjct: 256 LMGHAEGKAQDAAIANEVAVATTLLDVFLAEIATCCCITLMPGQHDPVNAMLPQKPLHPC 315
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWR 354
+ P ++ + +F+ TNP ++ +G+SGQ IDD+ K + A D L+++ERTL WR
Sbjct: 316 ILPLTSRFESFKGATNPWIGKIAERVIMGSSGQPIDDIIKATGATDISPLDWLERTLFWR 375
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS 414
H+ PTAP+TL +P++ +DPF++ CP +YF GN KFET+L +G + Q+VRL+CIPKFS
Sbjct: 376 HMCPTAPDTLPVHPYSVKDPFIINYCPDIYFVGNTDKFETKLWRGEENQVVRLICIPKFS 435
Query: 415 ETGVAVVVNLKNLECHTLSFGT 436
T +AV+V+++ L+ + FGT
Sbjct: 436 STNLAVMVDIETLDTEVIYFGT 457
>gi|357626913|gb|EHJ76811.1| DNA polymerase delta small subunit [Danaus plexippus]
Length = 439
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 240/408 (58%), Gaps = 14/408 (3%)
Query: 33 GQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL-EEGRECVIIGTLYKHMKLKP 90
+QY+ IY ARL++ R +L +V + I + +L ++G C+IIGTL+K +LKP
Sbjct: 41 SKQYAHIYSARLNIFRNILAPVVNKKYSNKYKILKLCDLRDKGTPCIIIGTLFKLQELKP 100
Query: 91 SILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGK 150
SIL E S + P +F+H D LVLEDE R+KL G + + VTG+VVA+ G
Sbjct: 101 SILKELSDQLEILPQPTRTHFVHETDSLVLEDELQRIKLSGDCIDVNKVVTGVVVAILGS 160
Query: 151 ETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYVVLVSGLNVGSGTSNPL-QFQLLVDHI 208
E G F V DV AG QK LP LN+ D+Y+VL+SGL++ S + L L ++ +
Sbjct: 161 EDEDGIFTVKDVCWAGCNVQKPLPTLNN--DRYIVLMSGLSLASKFGDHLFSLNLFIEWL 218
Query: 209 TGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK-DQSRLFEPIKELDILLTQ 267
+G G + Q ++IV V+IAG G+ Q+ + +S + +D
Sbjct: 219 SGFCGTTQYQEEVSKIVRVIIAG-------GIYANQSSDYQLSESDVISSSDVVDSFSAA 271
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTS 327
++A PLD+MPG DP LPQ+P + CLFP + Y +F +NP+ ++ LGTS
Sbjct: 272 VSAVTPLDLMPGCKDPTGIMLPQKPFHYCLFPKAIEYKSFNRVSNPYECDIGGFVCLGTS 331
Query: 328 GQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG 387
G+ I D+ + SE + L+ M++TL WRH+APT P+ + C P D DPF + +CP +YF+G
Sbjct: 332 GEPIRDIMQNSEIDKHLDVMKKTLEWRHMAPTCPDNVPCTPCIDTDPFTIYNCPAIYFSG 391
Query: 388 NQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
N +FET + G D Q VR+VCIP F ET V+VNL NLEC++++FG
Sbjct: 392 NCTEFETEIFNGDDGQKVRIVCIPDFCETKTVVLVNLANLECYSMTFG 439
>gi|194864974|ref|XP_001971198.1| GG14822 [Drosophila erecta]
gi|190652981|gb|EDV50224.1| GG14822 [Drosophila erecta]
Length = 431
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 234/434 (53%), Gaps = 20/434 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFCHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVS 187
L G +L TG+V A G S G F V D+L PQK L P+ + +VL S
Sbjct: 123 LQG-QLNGQFLATGVVCAALGGTDSEGFFNVEDMLFYESGPQKPLAPIK--RSRLLVLAS 179
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLL 241
GL+ L + G LG+ KE G +V +++AGNS+ +P +
Sbjct: 180 GLDQLQAHKFVEALNLFQYWLAGSLGNGKEAG---SMVRLIVAGNSVRASAMAHVPTLQV 236
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + + +LD A +P+DIMPG DPANF LPQQP ++C+FP +
Sbjct: 237 ARTQANANDT---VQAVTQLDQWFASWARSLPVDIMPGAFDPANFMLPQQPFHKCMFPQA 293
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
A TF++ TNP+ LD +GTSGQ + DL + + + L+ + TL W H+APTAP
Sbjct: 294 AQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALDALRCTLTWGHVAPTAP 353
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ D DPF++ CPHVYFAGN + F T L +G++ + RLVC+P FS T V
Sbjct: 354 DTLACYPYIDSDPFIMRECPHVYFAGNCESFATELHEGAEGKRTRLVCVPSFSRTQSVAV 413
Query: 422 VNLKNLECHTLSFG 435
VNL L+C ++F
Sbjct: 414 VNLDTLDCRLVNFS 427
>gi|47212927|emb|CAF90299.1| unnamed protein product [Tetraodon nigroviridis]
Length = 457
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 170/433 (39%), Positives = 246/433 (56%), Gaps = 18/433 (4%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVL 68
+R +TY E + + + ++ +QY+ IY ARL MR L W +P+ +
Sbjct: 27 FKRTSSTYHLRSERYSVGERSF-SRQYAHIYAARLMQMRPLFSETARQKWGSDVPVKKLC 85
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
+LE G C I+GTL+K M L+PSIL E S E + P ++ D+L+LEDE R+K
Sbjct: 86 DLETGERCCIVGTLFKSMDLQPSILKEISDEHNLLPQPARAKYISETDNLILEDELQRIK 145
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
LGG ++ VTG V+A++G E + G+F V D AG Q P S D++V+L SG
Sbjct: 146 LGG-KIDKDKCVTGSVIAIYGSERNDGKFTVEDFCLAGFPLQTPRPALSC-DRFVLLASG 203
Query: 189 LNVGSGTSNP-LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNG 243
L +GS ++ L QLL+D +TG LG++ EQ AA I +++AGN + + +
Sbjct: 204 LGLGSSHADSMLGLQLLIDLVTGQLGEQGEQNGAATISRIILAGNLLSQNTQEKDATIKP 263
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+ L K Q+ E + LD LL Q+ A VP+D+MPG DP N++LPQQPL+ C+FP S+
Sbjct: 264 KYLTKKTQAGSVEAVCLLDELLLQLVASVPVDVMPGQYDPTNYNLPQQPLHHCMFPLSSA 323
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
Y+T +NP+ ++D VRFLGTSGQ + D+ +YS + LE +E TL RHLAPTAP+T
Sbjct: 324 YSTLHLVSNPYQADIDGVRFLGTSGQNVSDIHRYSSMDSHLEILEETLHLRHLAPTAPDT 383
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKF-ETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
L F +R+ F +F+ Q G Q V LV IP+FS + A +V
Sbjct: 384 LVKVRFQNREDF--------HFSRWQSTIPAGGGELGPGGQEVLLVTIPEFSHSQAACLV 435
Query: 423 NLKNLECHTLSFG 435
NL+ L C +SF
Sbjct: 436 NLRTLSCEPVSFS 448
>gi|332016886|gb|EGI57695.1| DNA polymerase delta small subunit [Acromyrmex echinatior]
Length = 458
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 161/439 (36%), Positives = 245/439 (55%), Gaps = 15/439 (3%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHLPICTVL 68
+R+ Y L F+ K +Q+ IY RL +R L+ +V W + I +
Sbjct: 24 FKRQDVQYEDLSSDFD-NKSIDFSRQFCSIYAVRLAELRETLIPRVVAKWG-DVQIVKLA 81
Query: 69 ELE--EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
ELE E ++CVIIGTLYKH K KPSIL E S++ T N+ D L LEDE R
Sbjct: 82 ELEDFERQKCVIIGTLYKHQKCKPSILHELSEDHQLTLSEPKSNYCSEKDQLFLEDEMLR 141
Query: 127 VKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLV 186
+KL + YVTG+V A+ G + G F + + G P + LP +V +
Sbjct: 142 IKLVIEDADLKNYVTGVVCAILGYKDKNGSFEIKEWCFPGCVP-RSLPAQPKSKGKLVFL 200
Query: 187 SGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR------GL 240
SGL++ + ++N L LL + I G G+ Q A +IV V+IAGNS++ G
Sbjct: 201 SGLDLANTSTN-LSLNLLTEWICGMAGETAAQEDATDIVRVIIAGNSVKTVTKTNTLMGH 259
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
G+ + + D L +IA + +MPG +DP N LPQ+PL+ C+ P
Sbjct: 260 AEGKAQDAAITKEVARATTLADSFLYEIAKCCCIIVMPGQHDPTNAMLPQRPLHPCILPL 319
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWRHLAP 358
++ + +F+S TNP ++ +G+SGQ I+D+ K + D L+++E+TL W+H+ P
Sbjct: 320 TSRFQSFKSATNPWIGKIAERIIMGSSGQPIEDIIKATGETDISPLDWLEKTLLWKHMCP 379
Query: 359 TAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGV 418
TAP+TL YP++ +DPF++ CP +YF GN KFET+L KG + Q+VRL+CIPKFS T +
Sbjct: 380 TAPDTLPVYPYSVKDPFIINYCPDIYFVGNTDKFETKLWKGEENQMVRLICIPKFSSTHI 439
Query: 419 AVVVNLKNLECHTLSFGTQ 437
AV+++++ L+ + FGT+
Sbjct: 440 AVMIDIETLDTEFICFGTE 458
>gi|195403405|ref|XP_002060280.1| GJ16059 [Drosophila virilis]
gi|194140619|gb|EDW57093.1| GJ16059 [Drosophila virilis]
Length = 432
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 241/433 (55%), Gaps = 15/433 (3%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSL-VPNWKPHLPICTVLEL 70
R Y L P+ +Q Y+ +Q+ +Y RL M LL L W +PI + EL
Sbjct: 4 RLNCHYENLSSPYLLQTTDYQ-KQFCHLYAHRLAEMTRLLAPLGQTKWGKEVPIMKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ +C+IIGT+YKH KPSIL + S+E P + N+ P+D ++LEDE RV+
Sbjct: 63 RGEQNVQCIIIGTVYKHQAHKPSILRDISEENQLAPQPQRQNYSEPEDKVMLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L G L TGIV A+ G + G F V +VL PQK L + K +V++SG
Sbjct: 123 LQGEHLEARNLATGIVCAVKGGTDNDGYFNVEEVLFLESGPQKPLSPRTPGSK-LVIISG 181
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR-----GLLNG 243
L+ + + ++G LG+ +E A V +++AGNS+ L
Sbjct: 182 LDQLQAHNYVDALNIFQYWLSGCLGNSRE---AQSTVRLIVAGNSVRSTAIAHAPTLQVA 238
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+N A+ + + + + +LD A + +D+MPG DPANF LPQQP ++C+FP ++
Sbjct: 239 RNQANANDT--VQAVGQLDSWFVSWAHALTVDVMPGAYDPANFMLPQQPFHKCMFPLASQ 296
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
++F+S +NP+ LD+ +GT+GQ + DL + + + L+ + TL W H+APTAP+T
Sbjct: 297 LSSFQSVSNPYACRLDSALVVGTAGQNVADLLRSTSLDSSLQALRCTLTWGHVAPTAPDT 356
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
L CYP+ DPF+++ CPHVYFAGN + FET L G+ + RLVC+P F +T +++
Sbjct: 357 LACYPYISSDPFIMKECPHVYFAGNCESFETELHVGTGGKKTRLVCVPSFCKTQSVALID 416
Query: 424 LKNLECHTLSFGT 436
L++L+C + F
Sbjct: 417 LESLDCRQIKFSA 429
>gi|195490562|ref|XP_002093191.1| GE21185 [Drosophila yakuba]
gi|194179292|gb|EDW92903.1| GE21185 [Drosophila yakuba]
Length = 431
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/434 (37%), Positives = 239/434 (55%), Gaps = 20/434 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL LV W PI + EL
Sbjct: 4 RLETKYENLSSIFLLKGHDYQ-KQFCHLYAHRLAEMTRLLTPLVQKKWGNKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDIHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVS 187
L G E+ TG+V A G S G F V D+L PQK L P+ + +++VL S
Sbjct: 123 LQG-EINGQFLATGVVCAALGGTDSDGFFNVEDMLFYESGPQKPLAPIKTS--RFLVLAS 179
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLL 241
GL+ L + G LG+ KE A+ +V +++AGNS+ +P +
Sbjct: 180 GLDQLQAHKFVEALNLFQYWLAGSLGNSKE---ASSMVRLIVAGNSVRSSAMAHVPTLQV 236
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + + +LD A +P+DIM G DPANF LPQQP ++C+FP +
Sbjct: 237 ARTQANANDT---VQAVTQLDQWFASWARCLPVDIMAGAYDPANFMLPQQPFHKCMFPQA 293
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
A TF++ TNP+ LD +GTSGQ + DL + + + L+ + TL W H+AP+AP
Sbjct: 294 AQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTALDSALDALRCTLTWGHIAPSAP 353
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ D DPF++ CPHVY+AGN + F T L +G++ + RLVC+PKFS+T V
Sbjct: 354 DTLACYPYIDSDPFILRECPHVYYAGNCESFATELHEGAEGKRTRLVCVPKFSKTQSVAV 413
Query: 422 VNLKNLECHTLSFG 435
V+L L+C ++F
Sbjct: 414 VDLDTLDCRLVNFS 427
>gi|145352809|ref|XP_001420728.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580963|gb|ABO99021.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 429
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 168/437 (38%), Positives = 236/437 (54%), Gaps = 49/437 (11%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
QY Q+YF RL ++ P +P VLEL E CVI+GT+YK MK KP ILD
Sbjct: 4 QYFQLYFNRLQALKPRAREAARARWPTMPTRAVLELCEDEACVIVGTIYKDMKDKPIILD 63
Query: 95 EYSKE-------RSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVAL 147
EY K + T + + DD L EDE RVKL G + +VTG+V A+
Sbjct: 64 EYVKGYGEEAEGAAATTREERATYTREDDGLEFEDEGARVKLLGVDA--GKFVTGVVCAV 121
Query: 148 HGKETSAGEFLVLDVLDAGLAP------QKELPLNSGEDKYVVLVSGLNVGSG-TSNPLQ 200
GK G+FLV DV+ AP +K S KYV LVSG +G + +
Sbjct: 122 KGKAVK-GDFLVDDVV--AYAPPTTGEAKKSKSEASTATKYVCLVSGFEIGGNDAAASAR 178
Query: 201 FQLLVDHITGH---LGDEK-EQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFE 256
Q+ VD++TG GDE AA+I V+IAG ++++ + + + + E
Sbjct: 179 NQMFVDYVTGASIAYGDESPSDSDAAKICRVIIAGGTMDL-------KTSSEEPSAATSE 231
Query: 257 PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY-NTFRSCTNPHC 315
+KELDI+L ++A+ VP+D+M G DP N ++PQQPL+ FP ++ Y T TNPH
Sbjct: 232 ALKELDIMLAELASAVPVDVMSGKTDPTNKAMPQQPLHPVYFPEASKYEKTMCLVTNPHD 291
Query: 316 FELDNVRFLGTSGQTIDDLQKYS--EAND-------------QLEFMERTLRWRHLAPTA 360
+D FLGTSGQ ++D+ K+S +A+D + + +TLRW+H+AP A
Sbjct: 292 LTVDQTSFLGTSGQNVEDVMKFSTIDADDVSSAFVGAAAAKRPVAALTQTLRWQHIAPGA 351
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVR---LVCIPKFSETG 417
P+TL CYPF DRDPF++E P VYFAG Q F + V +V +PKFS TG
Sbjct: 352 PDTLACYPFKDRDPFVIERTPRVYFAGCQDAFGYERVSHDPAAGVADTLVVAVPKFSSTG 411
Query: 418 VAVVVNLKNLECHTLSF 434
+AV+V++ L C ++ F
Sbjct: 412 IAVLVDIDTLSCRSIQF 428
>gi|339244651|ref|XP_003378251.1| DNA polymerase subunit delta-2 [Trichinella spiralis]
gi|316972858|gb|EFV56504.1| DNA polymerase subunit delta-2 [Trichinella spiralis]
Length = 474
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 167/444 (37%), Positives = 244/444 (54%), Gaps = 27/444 (6%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHLPICTVL 68
LQR + T+I ++ F I +QY IY +RL R AL+ + PI +
Sbjct: 8 LQRAKGTFISFNDKFMINVNADFQRQYFYIYRSRLEYGRTALIEKAHKTYGESKPIRRIS 67
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESGRV 127
EL E ECV IGT+ K L+P++L E + E P + P D +VLEDE+ R+
Sbjct: 68 ELVEREECVTIGTVCKIQDLRPNVLKEIADEGHVIPQPIAPLKCTSDTDEVVLEDENLRI 127
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL-APQKELP----LNSGEDKY 182
KL G+ V IVVA+ G TS G+F V D++ + AP K + + + +Y
Sbjct: 128 KLIGS-------VESIVVAVCGMVTSGGKFHVDDIIFLPVSAPTKPVADPGSTSQVDSRY 180
Query: 183 VVLVSGLNV----GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR 238
V+LVSGL G+G L+ +L+ + G G+++EQ ++I ++IAGNSI+ +
Sbjct: 181 VLLVSGLGFDAREGAGGMGQLRAHILLQWLLGQCGEQREQSKVSQICRLIIAGNSIQAKQ 240
Query: 239 -------GLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
G + + L+ K + E D L ++ + +D+MPG DPAN LPQQ
Sbjct: 241 RNSAHTFGQV-AKYLSKKISNPGVEAALNFDAFLDKLVRFISVDVMPGDMDPANHLLPQQ 299
Query: 292 PLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTL 351
PL++CLFP S +T TNP+ +D V FLGTSGQ +DD+ ++S D+L M+ TL
Sbjct: 300 PLHKCLFPRSGKIDTLNRATNPYWASIDGVEFLGTSGQNVDDIYRFSSCEDRLTIMKNTL 359
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQ-LVRLVCI 410
W HL PT P+T+GCYP+ D+DPF+++ PHVYFAGNQ F D Q +VR+V +
Sbjct: 360 TWGHLCPTCPDTIGCYPYKDQDPFILDRLPHVYFAGNQPTFGVGQFHCDDGQHVVRVVSL 419
Query: 411 PKFSETGVAVVVNLKNLECHTLSF 434
P F +TG A +V+L L + F
Sbjct: 420 PAFCDTGCAALVDLVTLAVEPIVF 443
>gi|398395611|ref|XP_003851264.1| hypothetical protein MYCGRDRAFT_45479 [Zymoseptoria tritici IPO323]
gi|339471143|gb|EGP86240.1| hypothetical protein MYCGRDRAFT_45479 [Zymoseptoria tritici IPO323]
Length = 502
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/449 (35%), Positives = 240/449 (53%), Gaps = 48/449 (10%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY+ +YF RL ++ + ++ I VL++ +G C I+GT+Y
Sbjct: 48 QQYADMYFTRLAQLKPSVEAIAAEAFSDFEISGEAAKQVDRVLDVRQGTLCWIVGTIYME 107
Query: 86 MKLKPSILDEYSKER--STTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143
M LKP++LD+ KE + P + + D ++LEDESGR++L G L VTG
Sbjct: 108 MPLKPNVLDDIGKEHWIAAPPAREKYADGDADIPMMLEDESGRLRLTGGFLRSVLLVTGA 167
Query: 144 VVALHGKETSAGEFLVLDVL-------------DAGLAPQKELPLNSG--EDKYVVLVSG 188
+VA+ G E S G+F VLD+ D G A + L+S ++ V +VSG
Sbjct: 168 IVAVMGTENSDGDFEVLDIRVPDLPRQPPRWERDDGDAALQGKSLSSARPQNGKVAIVSG 227
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL-- 246
L++ T + L LL + +TG +Q AA + ++IAGNS+ + + + L
Sbjct: 228 LSISGDTGDTLTLDLLGEWLTGEAASLSDQTSAASVSRLIIAGNSLAHAQPIPTREELIA 287
Query: 247 ASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
A K + + P LD L + +P+ ++PG +DP + +LPQ P++ +
Sbjct: 288 AKKTSQKKYGYDAASYNAAPSDRLDTWLAGLLPSIPITLLPGQSDPTSTALPQHPIHAAM 347
Query: 298 FPGSATY------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE 345
FP S Y N F S TNP F++D RFLG GQT+DD+ +Y ++LE
Sbjct: 348 FPHSRAYTEHPVPGQTHLPNWFDSTTNPAEFDVDGWRFLGAGGQTVDDVYRYVSGEERLE 407
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLV 405
ME +RWR APTAP+TL C+PF D D F+++ CPHVYF GNQ KFET +++G Q V
Sbjct: 408 MMEAMMRWRLTAPTAPDTLWCFPFQDGDRFVMKECPHVYFVGNQPKFETSVIEGPHGQKV 467
Query: 406 RLVCIPKFSETGVAVVVNLKNLECHTLSF 434
RLV +PKF ETG V+++++ L+ + F
Sbjct: 468 RLVAVPKFKETGEIVLLDMETLDAEVVKF 496
>gi|28317170|gb|AAD46843.2|AF160903_1 HL03874p, partial [Drosophila melanogaster]
Length = 398
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 158/403 (39%), Positives = 222/403 (55%), Gaps = 19/403 (4%)
Query: 43 RLHLMRALLYSLV-PNWKPHLPICTVLEL--EEGRECVIIGTLYKHMKLKPSILDEYSKE 99
RL M LL L W PI + EL E+ C++IGT++KH KPSIL + S+E
Sbjct: 1 RLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDVHCILIGTIFKHQAHKPSILRDISEE 60
Query: 100 RSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLV 159
P N+ P+D +VLEDE RV+L G +L TG+V A G S G F V
Sbjct: 61 NQLAPQPPRQNYSDPEDKIVLEDELQRVRLQG-KLNGQLLATGVVCAALGGTDSDGFFNV 119
Query: 160 LDVLDAGLAPQKEL-PLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQ 218
D+L PQK L P+ + +VL SGL+ L + G LG+ KE
Sbjct: 120 EDILFYESGPQKPLAPIK--RSRLLVLASGLDQLQAHKFVEALNLFQYWLAGSLGNNKEA 177
Query: 219 GIAAEIVHVVIAGNSIE------IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGV 272
G +V +++AGNS+ +P + + D + + +LD A +
Sbjct: 178 G---SMVRLIVAGNSVRASAMAHVPTLQVARTQANANDT---VQAVSQLDQWFASWARSL 231
Query: 273 PLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTID 332
P+DIMPGP DPANF LPQQP ++C+FP +A TF++ TNP+ LD +GTSGQ +
Sbjct: 232 PVDIMPGPYDPANFMLPQQPFHKCMFPQAAQLATFQAVTNPYSCRLDEALVVGTSGQNVS 291
Query: 333 DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKF 392
DL + + + LE + TL W H+APTAP+TL CYP+ + DPF++ CPHVY+AGN + F
Sbjct: 292 DLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACYPYIESDPFILRECPHVYYAGNCESF 351
Query: 393 ETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
T L +GS+ + RLVC+P FS+T VV+L L+C ++F
Sbjct: 352 ATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTLDCRMVNFS 394
>gi|391335034|ref|XP_003741902.1| PREDICTED: DNA polymerase delta subunit 2-like [Metaseiulus
occidentalis]
Length = 450
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 174/448 (38%), Positives = 236/448 (52%), Gaps = 28/448 (6%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARL-HLMRALLYSLVPNW-KPH 61
D EE R + + L FE+ +R QY+ +Y R + AL + W
Sbjct: 7 DFEEKEFSRTKCDFKSLSTRFELCTRDFR-MQYANLYKKRYERCLPALRKRVDEEWGSSK 65
Query: 62 LPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSK---ERSTTPLVKPHNFMHPDDHL 118
PI V L+ G + +++GTL+K M +PSIL E S+ E + + NF +D L
Sbjct: 66 CPIEEVCNLKCGVQTIVMGTLFKTMPKQPSILREISEDIPEDAECTVEPTDNFTSDEDEL 125
Query: 119 VLEDESGRVKLGGAELL-PSAYVTGIVVALHGK-ETSAGEFLVLDVLDAGLAPQKELPLN 176
VLED RV + ++LL P VTG+ +AL G + F+V DVL G+ Q +P
Sbjct: 126 VLEDLRQRVAIRSSDLLSPHKLVTGVPIALMGAVDEEDAHFVVKDVLYIGIRNQPPVP-T 184
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
EDKYVV +SGLN+ S + FQL VD++TG +G KE A + V I GNS+
Sbjct: 185 IAEDKYVVFISGLNLSSN-HDLTPFQLFVDYLTGMIGSNKEVERTARVCKVFICGNSV-- 241
Query: 237 PRGLLNGQNLASKDQSRLFEPIKE----------LDILLTQIAAGVPLDIMPGPNDPANF 286
S+ +S F KE LD L ++ VP+DIMPG DP N
Sbjct: 242 ------AARSESEMKSSTFSLRKEVPDNAPFMNILDAYLNALSKSVPVDIMPGDMDPTNN 295
Query: 287 SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEF 346
LPQQPLN+ LFP SA S TNPH FE+D VRFLGTSGQ + D+ +YS L+
Sbjct: 296 QLPQQPLNQVLFPRSAVNGNLTSVTNPHEFEIDGVRFLGTSGQNVADILRYSRLPGPLDA 355
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVR 406
+E +RW HL P+AP+T YP DPF++E PHV FAGNQ +F+ ++ + V
Sbjct: 356 LEAIVRWCHLIPSAPDTTPAYPQQQTDPFVIEETPHVLFAGNQPEFQAKIYTDEAGRSVL 415
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSF 434
L+ IP F +T V +NL+ LE L F
Sbjct: 416 LLSIPAFWKTPTCVWLNLRTLEASKLDF 443
>gi|302692486|ref|XP_003035922.1| hypothetical protein SCHCODRAFT_84485 [Schizophyllum commune H4-8]
gi|300109618|gb|EFJ01020.1| hypothetical protein SCHCODRAFT_84485 [Schizophyllum commune H4-8]
Length = 504
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/433 (36%), Positives = 248/433 (57%), Gaps = 35/433 (8%)
Query: 34 QQYSQIYFARLHLMR-ALLYSLVPNWKP------HLPICTVLELEEGRECVIIGTLYKHM 86
+QY+ IY+ RLH +R A++ + WK H+P VLE+ + + C ++GT+Y M
Sbjct: 38 KQYANIYYLRLHSLRDAVIENAQRKWKDLDGSPVHIP--RVLEVSKAKLCYVVGTVYMEM 95
Query: 87 KLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVA 146
LKPS++++ +++ S P P +DH++LEDESGR++L GA + + VTG+++
Sbjct: 96 PLKPSVMEDIARDHSIAPPPPPPKICSKEDHVMLEDESGRIRLVGARVTAAPLVTGVIIG 155
Query: 147 LHGKETSAGEFLVLDVLDAGLAPQKELPLNSG-------EDKYVVLVSGLNVGSGTSNPL 199
G ET G+F V+D+ A + P + ED YV VSGLNVG+ ++
Sbjct: 156 ALGVETPNGDFEVVDICYAEMPPPTYPKEDDSAAMEVEEEDSYVAFVSGLNVGAPSAADA 215
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLF---- 255
Q Q+LV+++TG G + A++I +VIAG+S+ +L + + + ++R F
Sbjct: 216 QLQMLVEYLTGEGGGLDDTISASQISRLVIAGDSLST---VLVTEEVTDERKARRFGYDA 272
Query: 256 -----EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
P L L I +P+ ++PG NDP+ +PQQPL R +F + +TF+
Sbjct: 273 TTFSPHPTLSLSATLLDIGRSMPIHLLPGANDPSGAIMPQQPLPRRMFGMVSKLSTFKCE 332
Query: 311 TNPHCFEL----DNVRFLGTSGQTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTL 364
TNP +L + L SGQ +DD+ KY S +L E TLRWRH+APTAP+TL
Sbjct: 333 TNPTFIDLAAGPRKRQLLVHSGQPLDDMFKYLPSPPARRLGIAEATLRWRHMAPTAPDTL 392
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNL 424
C+PF +PF++++ P +Y GNQ+KF TRL SD Q R+V +P+FS TG+ V+VN+
Sbjct: 393 WCHPFFHAEPFVLQNTPDLYIIGNQKKFATRLAGPSDGQ-CRIVLVPQFSSTGMVVLVNM 451
Query: 425 KNLECHTLSFGTQ 437
+ L+ T++ T
Sbjct: 452 RTLKVKTVTLKTH 464
>gi|393245851|gb|EJD53361.1| hypothetical protein AURDEDRAFT_54409 [Auricularia delicata
TFB-10046 SS5]
Length = 454
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 165/447 (36%), Positives = 237/447 (53%), Gaps = 28/447 (6%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR--------ALLYSLVPNWKPHLP 63
R+ A LDE +Y+ Q++ +YFARLH +R A S W H+P
Sbjct: 9 REAANPFLLDE----GGRSYK-HQFANLYFARLHKLRGDVLKQAKAKWASTDGAWSVHVP 63
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
VLE+ +G+ I+GTLY M+LKP++LD+ + + +D L+LEDE
Sbjct: 64 --KVLEVSKGQRSYIVGTLYMEMRLKPNVLDDIGHDHNIVSTTVRDKIYSDEDALMLEDE 121
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED--- 180
SGR+KL G L VTG++VA G E GEF V D+ AP+ L D
Sbjct: 122 SGRIKLIGDALSKYNLVTGVIVAALGCENIQGEFEVADLCFTAPAPRASLKSEDAMDVDS 181
Query: 181 -------KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
++V L+SGL+ G S + +LL++ ++ LGD +Q + I ++I GNS
Sbjct: 182 MCSSEVARHVALISGLDFGEDASGTMALELLLEFLSSELGDAADQSLGRSISRLIIIGNS 241
Query: 234 IEIPRGLLNGQNLASKDQ--SRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
+G AS+ Q S L F P+ E L +P+ +MPGP+DP + +LPQ
Sbjct: 242 FAPLPEDEDGDVRASRLQEASELPFLPVGECGQFLLDACVQMPVHLMPGPSDPTSATLPQ 301
Query: 291 QPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERT 350
QP+ +F R TNP F++D L +GQ IDD+ +YS D+L T
Sbjct: 302 QPIPSAVFGPVHGAENLRCETNPCSFDIDECSILAIAGQNIDDICRYSANEDRLAIARDT 361
Query: 351 LRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCI 410
LRWRH+APTAP+TL CYPF DPF+++ PHVY GNQ F+T ++K +R+V +
Sbjct: 362 LRWRHIAPTAPDTLWCYPFVADDPFVLKESPHVYAIGNQAAFQTDIVKDEAGNPIRVVLV 421
Query: 411 PKFSETGVAVVVNLKNLECHTLSFGTQ 437
P+FS+TG V++N K LE +SF T
Sbjct: 422 PRFSKTGTLVLLNTKTLEVRPISFQTS 448
>gi|347830780|emb|CCD46477.1| similar to DNA polymerase subunit delta-2 [Botryotinia fuckeliana]
Length = 497
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 163/458 (35%), Positives = 239/458 (52%), Gaps = 49/458 (10%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRE 75
F + K QQY +YF RL ++ + + I VL++ +G+
Sbjct: 35 FALSKSKQYQQQYGDMYFLRLTSLKKPVEEIASAAWDGFQISGEEVRKVERVLDVRQGKL 94
Query: 76 CVIIGTLYKHMKLKPSILDEYSKER--STTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
C + GT+Y +M LKP+IL++ SK+ S P + + +D ++LEDESGR++L G +
Sbjct: 95 CWVAGTIYMNMPLKPNILEDISKDHWISAPPPRRKYLSGDGEDEIMLEDESGRLRLIGGQ 154
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED------------- 180
L VTG +VA+ G E + G+F V+D+ L PQ+ SGE
Sbjct: 155 LSKELLVTGCIVAVMGTENANGDFEVVDIKVPDLPPQEPRWEISGEKEEEDTDMDTGKAG 214
Query: 181 -KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI---- 234
K + LVSGL+ G+ N L+ LL +++ G D Q ++I ++IAGNSI
Sbjct: 215 RKKIALVSGLSFSGTSAENSLEKALLTEYLLGESLDPSSQADVSKISRLIIAGNSIASDL 274
Query: 235 -EIPRGLLNGQNLASK----DQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSL 288
I + A K D S P D L ++ +P+ ++PGP+DPAN SL
Sbjct: 275 DSIAHDTVGNTRKAQKKYGYDASAFNPAPTTHFDNFLAELLPSLPITLLPGPSDPANASL 334
Query: 289 PQQPLNRCLFPGSATY--------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDL 334
PQQP++ +FP + Y F + TNP E++ R LGT GQ +DD+
Sbjct: 335 PQQPIHPAMFPQARAYCGSAPSVIGEEREAGWFDTVTNPWEGEIEGWRVLGTGGQNVDDV 394
Query: 335 QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET 394
KY E D+L ME RWR APTAP+TL YPF D DPF++ +CPH++FAGNQ F+T
Sbjct: 395 FKYVEGEDRLRMMEAMCRWRCCAPTAPDTLWSYPFQDADPFIINTCPHIFFAGNQPSFDT 454
Query: 395 RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
++G D Q VRL+ IP F ETG V+++ + LE +
Sbjct: 455 ASIEGPDGQTVRLISIPSFEETGEIVLLDAETLEAEVV 492
>gi|403166950|ref|XP_003326790.2| hypothetical protein PGTG_08327 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166794|gb|EFP82371.2| hypothetical protein PGTG_08327 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 550
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 161/424 (37%), Positives = 243/424 (57%), Gaps = 27/424 (6%)
Query: 33 GQQYSQIYFARLHLMRALLY-SLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPS 91
QQ++++YF RL +R L + WK P C VL+++ R V+IGTLY MKLKP+
Sbjct: 31 AQQFAKVYFLRLSRLRERLKEKCLERWKAQTP-CRVLDIDPSRISVVIGTLYCEMKLKPN 89
Query: 92 ILDEYSKERSTTPLVKPHNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGK 150
+L++ ++E P + P ++ D D ++LEDESGRV+L G + VTGI+V + G+
Sbjct: 90 VLEDLAREHHLGPALGPRKWVSTDEDSIMLEDESGRVRLVGIDREKFTLVTGIIVGVMGR 149
Query: 151 ETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY----VVLVSGLNVGSGTSN--PLQFQLL 204
ETS G+F V D++ AG+ Q P ++ V LVSGL++ + S+ + + L
Sbjct: 150 ETSKGDFQVHDLIYAGVPDQPRKPTGKKKEDLDQGLVALVSGLDLDNNNSSRTKARAETL 209
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP---RGLLNGQNLASKDQSRLFEP---- 257
V+ + G +G ++E+ +A + +VIAGN +P + A+K + +EP
Sbjct: 210 VEWLNGQIGGDEERRLARSVGRLVIAGNLTRVPSVNEPPVQNSKEATKLKRSAYEPAISA 269
Query: 258 ---IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT--- 311
D LL+Q+ +P+D+MPGP DP SLPQQ L+RCLFP + T
Sbjct: 270 PPPTDPADQLLSQL--DLPVDLMPGPTDPTIQSLPQQALHRCLFPKATALRTAHPLNHGP 327
Query: 312 NPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTD 371
NP E+ FLGTSGQ +DD+ KY D+L + L W H+APTAP+TL CYPF +
Sbjct: 328 NPWWAEIGGASFLGTSGQNLDDIYKYVVDEDRLSLATQMLEWSHIAPTAPDTLHCYPFRE 387
Query: 372 RDPFLVESCPHVYFAGNQQKFETRLLK---GSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
RDPF++ P VYF GNQ +F+T L + +R R++ +P+FS +G V+V+ +L
Sbjct: 388 RDPFVLSELPQVYFVGNQPEFKTHLQEYGPPENRSRTRIILLPRFSRSGTIVLVDPISLV 447
Query: 429 CHTL 432
C T+
Sbjct: 448 CQTV 451
>gi|402224606|gb|EJU04668.1| hypothetical protein DACRYDRAFT_93140 [Dacryopinax sp. DJM-731 SS1]
Length = 418
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 154/380 (40%), Positives = 235/380 (61%), Gaps = 14/380 (3%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPDDHLVLEDESG 125
VL++++G C IIGT+Y M LKP++L++ SK+ P +P F PDD ++LEDESG
Sbjct: 27 VLDVQKGELCFIIGTIYMDMPLKPNVLEDISKDHWIAAPPPRPKIF-SPDDSVMLEDESG 85
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS----GEDK 181
RV+L G + + VTG+++ G ET+ G+F V+DV AG+ PQ E + GE++
Sbjct: 86 RVRLVGERVSKAHLVTGVIMGALGAETAKGDFEVVDVCFAGMPPQTERAEDGMDVDGEER 145
Query: 182 ---YVVLVSGLNVGSGTSNP--LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
+V LVSGL++G G+S P ++ QLLV+++T LG E+++G +A I +++AGNS+
Sbjct: 146 KGEWVALVSGLDIG-GSSAPADMRVQLLVEYLTSELGGEEDEGESARISRLILAGNSLTP 204
Query: 237 P--RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
P + ++ + S P L L ++ +P+ +MPG +DPA +LPQQ L
Sbjct: 205 PIRQEEISKKRYGYDSSSYSATPTLTLSSHLLDLSRTMPVHLMPGASDPAGATLPQQALP 264
Query: 295 RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWR 354
+ +F + F TNP L+ LG GQTIDD+ KY +++D+LE TL WR
Sbjct: 265 KAMFGEVRRASGFSCETNPCWIPLEGCLMLGVGGQTIDDIFKYVDSSDRLEMARSTLLWR 324
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS 414
H+APTAP+TL C+PF D+DPF++ P VYF GNQ FET +++G + Q R++ +P+FS
Sbjct: 325 HIAPTAPDTLWCHPFADKDPFIIPRTPDVYFVGNQPAFETGMVRGVEGQRSRVILLPRFS 384
Query: 415 ETGVAVVVNLKNLECHTLSF 434
+TG V+V+ LE TL+
Sbjct: 385 KTGKFVLVHTGTLEVKTLTI 404
>gi|378725420|gb|EHY51879.1| DNA polymerase delta subunit 2 [Exophiala dermatitidis NIH/UT8656]
Length = 509
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 161/454 (35%), Positives = 245/454 (53%), Gaps = 53/454 (11%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-PNWK-------PHLPICTVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ ++ + +W+ + VL++ +G+ C ++GT+Y
Sbjct: 45 QQYGDMYFLRLAKLKPVVERIAGEDWEDFEIAGEKAQRVERVLDVRQGQLCWVVGTIYMD 104
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAELLPSAYVTGI 143
M LKP+IL++ +KE H++ D ++LEDESGR++L G L + VTG+
Sbjct: 105 MPLKPNILEDIAKEHWIAGPPPRHSYFSADIETQVMLEDESGRLRLTGPMLENNLLVTGV 164
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQ-KELPLNSGED---------KYVVLVSGLNVGS 193
+VA+ G E + G+F VLD+ L PQ K E+ K + LVSGLN+
Sbjct: 165 IVAVLGTENANGDFEVLDLHIPELPPQPKRWQGYEKEEGKMDVEQPRKKIALVSGLNISG 224
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE----------IPRGLLNG 243
++ L+ LL +++ G DE+++ A+ I ++IAGNS+ + G G
Sbjct: 225 TEADTLRLSLLSEYLLGEALDEEDRTEASTISRLIIAGNSVASDLLPNHQTAVEDGKKPG 284
Query: 244 QNLASKDQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSA 302
D S P + LD L ++ +P+ IM G DPAN SLPQQP++ +FP S
Sbjct: 285 NRKYGYDASAYNPSPTEHLDQFLAELLPSIPVTIMAGEQDPANASLPQQPIHPAMFPHSR 344
Query: 303 TYNT--------------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSE--------A 340
Y T S TNP +D RF+G SGQ +DD+ +Y + +
Sbjct: 345 AYTTANVLHPEEEEEPAWLDSVTNPWDGGIDGWRFMGNSGQPVDDILRYVDLGGPDGTGS 404
Query: 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS 400
+ ++E M LRWR APTAP+TL C+PF DRD F++E CPHV+F GNQ +FET +++GS
Sbjct: 405 DGRMEVMMNMLRWRCAAPTAPDTLWCFPFQDRDQFVIEECPHVFFVGNQPRFETHVIEGS 464
Query: 401 DRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
Q VRL+ IP+F ETG ++++ + LE L F
Sbjct: 465 QGQHVRLITIPRFHETGELILLSSETLEVQVLKF 498
>gi|353235258|emb|CCA67274.1| related to dna polymerase delta small subunit [Piriformospora
indica DSM 11827]
Length = 480
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 245/444 (55%), Gaps = 36/444 (8%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLP----ICTVLELEEGRECVI 78
E +Y+ QY+ +YF+RL L+R ++ W+ + + +L++++G C I
Sbjct: 30 LETNDASYK-HQYANLYFSRLSLLRKQVIERAKQQWRSAIGNAIFVNRILDIKKGERCWI 88
Query: 79 IGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSA 138
+GT+YK M LK ++L++ +KE P F +D VLEDESGRV LGG L
Sbjct: 89 VGTVYKEMPLKDNVLNDLAKEHGVEPPPPRLKFHSKEDMAVLEDESGRVPLGGEFLDSIN 148
Query: 139 YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE--------DKYVVLVSGLN 190
VTG+++A+ G ET+AGEF V+DV G+A Q L + + ++++ LVSGLN
Sbjct: 149 IVTGLILAVLGVETTAGEFHVVDVCYPGVAEQTPLAQHGTKATMDVDNANEWIALVSGLN 208
Query: 191 VG-SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS---------------I 234
VG + L+ LLV+++ G + +Q ++ I VVIAGNS +
Sbjct: 209 VGLPSAAADLRVNLLVEYLLSEAGQQSDQRDSSTITRVVIAGNSFAPVSLSEEVAKEETV 268
Query: 235 EIPRGL--LNGQNLASK--DQSRLFE--PIKELDILLTQIAAGVPLDIMPGPNDPANFSL 288
+P + + + A K QS F P + L L+++A + + ++PG NDP++ +L
Sbjct: 269 TVPGEVAPVAAKRAAKKFSYQSSAFSMHPTQSLSGHLSELARAMIVHLVPGANDPSSATL 328
Query: 289 PQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFME 348
PQQPL R +F + Y +F + TNP LG GQ +DD+ +Y +++D+L
Sbjct: 329 PQQPLPRAMFGAAKDYESFHTETNPCWIGAGACHILGNGGQPLDDVFRYVKSSDRLALAC 388
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
L+WRH+APTAP+TL CYP+ DPF++ PHV+F GNQ +FET ++ R+V
Sbjct: 389 EMLKWRHMAPTAPDTLWCYPYFSSDPFIMTKAPHVFFVGNQPRFETAIVDHGGGSKTRVV 448
Query: 409 CIPKFSETGVAVVVNLKNLECHTL 432
+P+FS+ G ++VN LE +
Sbjct: 449 LLPRFSDNGEVILVNPATLEVKAV 472
>gi|384499023|gb|EIE89514.1| hypothetical protein RO3G_14225 [Rhizopus delemar RA 99-880]
Length = 894
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 151/414 (36%), Positives = 227/414 (54%), Gaps = 68/414 (16%)
Query: 20 LDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVII 79
L++ F ++++TY QQY++ VP + + VL + G C ++
Sbjct: 149 LNDQFRVKQQTY-SQQYAK----------------VPRY-----VEKVLNTQPGELCYMV 186
Query: 80 GTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAY 139
GT+Y M KP++L++ E + P + +D + LEDESGRV++ GA L
Sbjct: 187 GTIYLQMNKKPNVLNDLEDEETIVRPDTPAKYRSDEDVISLEDESGRVEITGACLSKQFL 246
Query: 140 VTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPL 199
VTG++V + GKE + G F V+D+ G+ PQK PL +
Sbjct: 247 VTGMIVGILGKEVATGTFEVIDICLPGVPPQK--PLTT---------------------- 282
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259
L + +TG L E EQ ++ I V++AGNSI P+ N +
Sbjct: 283 ----LQEFLTGEL--EGEQ--SSSITRVILAGNSIIKPKKAKNNEG-------------- 320
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELD 319
+D L ++ + V +DIMPG DP+ LPQQ ++ +F + +T S +NP+ E++
Sbjct: 321 HVDDFLEELCSTVDVDIMPGATDPSQSHLPQQRMHPSMFKQAHKLSTLNSVSNPYWCEIE 380
Query: 320 NVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES 379
N+ FLGTSGQ IDD+ +Y ++ D+L+ E + WRH+AP+AP+TL YPF DRDPF++E
Sbjct: 381 NITFLGTSGQNIDDIYRYVDSEDRLQMAESCMYWRHMAPSAPDTLWSYPFKDRDPFIIEQ 440
Query: 380 CPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLS 433
CPHVYF GNQ +FE LL G D Q +R++ +P F+ETG V++NL NLEC LS
Sbjct: 441 CPHVYFVGNQPEFEDNLLLGPDGQQIRVILLPSFAETGTVVLLNLSNLECSILS 494
>gi|383853092|ref|XP_003702058.1| PREDICTED: DNA polymerase delta small subunit-like [Megachile
rotundata]
Length = 445
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 172/450 (38%), Positives = 250/450 (55%), Gaps = 24/450 (5%)
Query: 1 MEIDGEEARLQRKQATYIFLD-EPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNW 58
ME+D L ++ + F D E F+I + + +QY IY ARL ++ LL W
Sbjct: 1 MEVD---PPLVHRRKSVEFQDFEKFKILSKNFT-KQYCNIYNARLTALKDHLLQQAKIKW 56
Query: 59 KPH--LPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD 116
+ + I V E E + ++IGTLYKH +LKPSIL E S+E N+ D
Sbjct: 57 AQYKVVTISEVSERTENNDSIVIGTLYKHQELKPSILRELSEELQLATQPARSNYASFKD 116
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
L LEDES R+KL G + VTG+V A+ G E G FLV+D G P+
Sbjct: 117 VLYLEDESLRIKLVGNHMNIQDAVTGVVCAVLGHELENGSFLVIDWCYPGCCPKPSAFNK 176
Query: 177 SGEDK-YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
DK ++++SGL++ + T + L LL + ITG +G +K Q A IV+++IAGNSI
Sbjct: 177 LSSDKGKILIMSGLDLANNT-HLLSLNLLSEWITGMIGCKKSQIDVASIVYIIIAGNSI- 234
Query: 236 IPRGLLNGQNLA------SKDQSRLFEPI---KELDILLTQIAAGVPLDIMPGPNDPANF 286
RG + N + D++ E +LD L I P+ ++PG DP
Sbjct: 235 --RGSVETHNHKGYFENKAHDEAVFKETAIIAHKLDNFLHPIVQCCPVILLPGEFDPTCH 292
Query: 287 SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSE-AN-DQL 344
++PQQPL+ C+ P A + +F TNP +++ G+SGQ I D+ K + AN L
Sbjct: 293 TIPQQPLHPCVLPQCARFKSFYGATNPWIGSINSRIIAGSSGQPIIDIMKVAGLANVSPL 352
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL 404
++ERTL W+H APTAP+T+ YP DPF++ CP VYFAGN K++T+LL + Q+
Sbjct: 353 TWLERTLDWQHYAPTAPDTIPTYPSCKTDPFVMTECPDVYFAGNMDKYDTKLLTAEEGQI 412
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+RL+CIPKFS+T V+V+L++LEC +SF
Sbjct: 413 IRLICIPKFSKTQTVVLVDLQDLECWPISF 442
>gi|453082073|gb|EMF10121.1| DNA polymerase delta subunit 2 [Mycosphaerella populorum SO2202]
Length = 498
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 161/445 (36%), Positives = 237/445 (53%), Gaps = 45/445 (10%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY+ +YFARL ++ L L I VL++ +G C ++GT+Y
Sbjct: 49 QQYADMYFARLAQLKPSLVRLATEAFQDYEIGGEQAKRVDRVLDVRQGNLCWVVGTIYME 108
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVV 145
M LKP++LD+ KE + + ++LEDESGR++L G L VTG +V
Sbjct: 109 MPLKPNVLDDIGKEHWIAAPPAREKYNGGEGQVMLEDESGRLRLTGGFLGSVVLVTGAIV 168
Query: 146 ALHGKETSAGEFLVLDVL----------------DAGLAPQKELPLNSGEDKYVVLVSGL 189
A+ G E S G+F V+DV DA L +K K V +VSGL
Sbjct: 169 AVLGTENSDGDFEVIDVQVPDLPRQPARWERDEGDAALQGKKVTQKREKAGK-VAIVSGL 227
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL--A 247
++ + L LL +++ G +Q A++I +VIAGNS+ + + + +++ A
Sbjct: 228 SISGDAGDTLLLDLLAEYLLGEATSPSDQEQASQISRLVIAGNSLAHGQPIPSREDVIAA 287
Query: 248 SKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
K R + P LD L + +P+ ++PG DP + SLPQQP++ +F
Sbjct: 288 KKTGKRTYGYDASAYNAAPTDRLDSYLASLLPSIPITLLPGATDPTSTSLPQQPIHAAMF 347
Query: 299 P---------GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMER 349
P +T F S TNP F+LD RFLG GQT+DD+ KY + D+LE ME
Sbjct: 348 PHCRPYMPQAQDSTAGWFDSVTNPAEFDLDGFRFLGGGGQTLDDVYKYLDGEDRLEMMES 407
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC 409
LRWR APTAP+TL CYPF D D F+++ CPHVYF GNQ +FET +++G Q VR+V
Sbjct: 408 MLRWRLSAPTAPDTLPCYPFQDGDRFVMKECPHVYFVGNQPRFETSVIEGPQGQKVRMVT 467
Query: 410 IPKFSETGVAVVVNLKNLECHTLSF 434
+P FS+TG V+++L++L+ + F
Sbjct: 468 VPSFSKTGEVVLLDLEDLKVEIIKF 492
>gi|452837166|gb|EME39108.1| hypothetical protein DOTSEDRAFT_159262 [Dothistroma septosporum
NZE10]
Length = 504
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 246/470 (52%), Gaps = 56/470 (11%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC---- 65
L+R Q TY L + + QQY+ +YF RL ++ + + + I
Sbjct: 22 LERTQCTYNPLYTYSLPASQKHYQQQYADMYFTRLAQLKPAVEQIASEAFGDVEIAGEVC 81
Query: 66 ----TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKER--STTPLVKPHNFMHPDDHLV 119
VL++ +G+ C ++GT Y + LKP++LD+ KE S P + + + + +
Sbjct: 82 RKVDRVLDVRQGQLCWVVGTCYMELPLKPNVLDDIGKEHWISAPPNREKYASANGQESFM 141
Query: 120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLD------------------ 161
LEDESGR+KL G L VTG ++A+ G E S G+F VLD
Sbjct: 142 LEDESGRLKLTGGSLQGFLLVTGAIIAVMGTENSDGDFEVLDLRVPDLPRQPARWERDDS 201
Query: 162 -VLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGI 220
V+ G QK P SG+ V ++SG+++ + L LL++ + G +Q
Sbjct: 202 AVVRQGKKVQKGRP-QSGK---VAIISGMSISGDEGDTLALDLLMEWMLGEAACPIDQQG 257
Query: 221 AAEIVHVVIAGNSIEIPRGLLNGQNL--ASKDQSRLF---------EPIKELDILLTQIA 269
AA I ++IAGNS+ + + + +++ A K+ + + P LD LL +
Sbjct: 258 AANISRLIIAGNSLAHAQPIPSREDVIAAKKNAQKKYGYDAASYNAAPTDRLDTLLATLL 317
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY------------NTFRSCTNPHCFE 317
+P+ ++PG DP + SLPQQP++ +FP S TY N F S TNP F+
Sbjct: 318 PSIPVTLLPGATDPTSTSLPQQPIHAAMFPHSRTYMDSIAPTSSCTPNWFDSITNPGEFD 377
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
LD RFLG GQT+DD+ KY ++LE ME LRWR APTAP+TL C+PF D D F++
Sbjct: 378 LDGWRFLGAGGQTLDDVYKYVHGEERLEMMESMLRWRLTAPTAPDTLPCFPFQDGDKFVL 437
Query: 378 ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
+ PHVYF GNQ KFET ++G + VRLV +P F +TG V+++L+ L
Sbjct: 438 KESPHVYFVGNQPKFETSEIEGPHGETVRLVAVPSFRKTGQVVLIDLETL 487
>gi|406861039|gb|EKD14095.1| DNA polymerase alpha/epsilon subunit B [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 507
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/467 (33%), Positives = 246/467 (52%), Gaps = 58/467 (12%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRE 75
+ ++KE + QQY+ +YF RL ++ + ++ I VL++ +G+
Sbjct: 36 YALEKEKHYQQQYADMYFLRLAKLKPAVEAIAAEAWDGFCIGGEEVERTERVLDVRQGKL 95
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHP--DDHLVLEDESGRVKLGGAE 133
C + GT+Y M LKP+ILD+ SK+ + L ++ P +D ++LEDESGR++L GA
Sbjct: 96 CWVAGTIYMEMPLKPNILDDISKDHWISALPPRQKYLSPTGEDLVMLEDESGRLRLVGAP 155
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS---------------- 177
L VTG +VA+ G E + G+F V+D+ L PQ E S
Sbjct: 156 LASEMLVTGCIVAVMGTENANGDFEVVDIKVPDLPPQAERWHTSEPIPDKKIEEDEDEDV 215
Query: 178 -------GEDKYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
K + +VSGL G+ + L+ LL +++ G D Q ++I ++I
Sbjct: 216 DMDKPAPASGKKIAIVSGLGFSGTDAGHSLEVGLLAEYLLGEALDPTAQESVSQISRLII 275
Query: 230 AGNSIEIPRGLLNGQNLASKDQSRLF----------EPIKELDILLTQIAAGVPLDIMPG 279
AGNSI ++ + + ++ P K LD L I +P+ ++PG
Sbjct: 276 AGNSIAFNNEAVSHDTIGNTRKAHKKYGYDSSAYNPAPTKHLDDFLATILPSMPITLIPG 335
Query: 280 PNDPANFSLPQQPLNRCLFPGSATYNT--------------FRSCTNPHCFELDNVRFLG 325
+DPAN SLPQQP++ +FP + TY F + TNP E++ + LG
Sbjct: 336 YSDPANVSLPQQPIHPAMFPQARTYGAIPPSKDGEPAHPGWFDTVTNPWDGEIEGWKVLG 395
Query: 326 TSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYF 385
T GQ +DD+ KY E+ D+L +E RWR +APTAP+TL YPF + DPF++ +CPH++F
Sbjct: 396 TGGQNVDDVFKYVESEDRLGMLEAICRWRCVAPTAPDTLWSYPFQEDDPFVMNACPHLFF 455
Query: 386 AGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
G+Q KF+T ++G + Q VRL+ +P+F+ETG V+V+ + LE +
Sbjct: 456 VGSQPKFDTAEIEGPNGQTVRLIAVPRFAETGELVLVDSETLEASVV 502
>gi|440635650|gb|ELR05569.1| hypothetical protein GMDG_07489 [Geomyces destructans 20631-21]
Length = 516
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 165/471 (35%), Positives = 251/471 (53%), Gaps = 62/471 (13%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-W-------KPHLPICTVLELEEGRE 75
F+++K+ QQY +YF RL ++ + W + + VL++ +G
Sbjct: 37 FDLEKDKQYKQQYGDMYFLRLAKLKPAAEKVAAEAWAGFGIGGEEATKVERVLDVRQGEL 96
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAE 133
C + GT+Y M LKP+ILD+ SK+ T+ + + D D +LEDESGRV+L G+
Sbjct: 97 CWVTGTIYMDMALKPNILDDISKDHWTSAVPPRQKYKSSDGSDSTMLEDESGRVRLIGSR 156
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ---------KELPLNSGEDKY-- 182
L VTG +V++ G E + G+F V+D+ LAPQ + SG+ K
Sbjct: 157 LADEMMVTGCIVSVMGTENANGDFEVIDIRTPDLAPQPTRWEYSDSSKTAAESGKVKKQK 216
Query: 183 ------------------VVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAE 223
+ +VSGL++ GS T + LQ LL++++ G D Q A++
Sbjct: 217 VEDEDEEMTESRPGSGGKIAIVSGLDISGSNTGHTLQLNLLLEYLLGEALDPASQQQASQ 276
Query: 224 IVHVVIAGNSI----EIPRGLLNGQNLASKDQ----SRLFEP--IKELDILLTQIAAGVP 273
I ++IAGNSI +P G L A+ + S + P LD L + VP
Sbjct: 277 ISRLIIAGNSIVVDDSVPGGSLGNTRKATHKKYGYDSSAYNPAPTAHLDDFLAALLPSVP 336
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT------------FRSCTNPHCFELDNV 321
+ ++PG +DPAN SLPQQP++ +FP + Y + F + TNP E++
Sbjct: 337 VTLLPGASDPANASLPQQPVHSAMFPQARAYGSGPPTDGEKKIGWFDAVTNPWEGEVEGW 396
Query: 322 RFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCP 381
R LGT GQ +DD+ KY E +D+L ME RWR APTAP+TL YP D D F+++ CP
Sbjct: 397 RVLGTGGQNVDDVFKYVEGDDRLGMMEAMCRWRCCAPTAPDTLWSYPLQDDDSFVIKDCP 456
Query: 382 HVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
H+Y G+Q KF+T +++GSD Q+VRL+ +P+FSETG ++V+ + LE +
Sbjct: 457 HLYIVGSQPKFDTTVIEGSDGQMVRLIAVPRFSETGELLLVDSETLEVERV 507
>gi|156548446|ref|XP_001605019.1| PREDICTED: DNA polymerase delta small subunit-like [Nasonia
vitripennis]
Length = 451
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 158/445 (35%), Positives = 246/445 (55%), Gaps = 17/445 (3%)
Query: 6 EEARLQRKQATYIFLDEPFEIQKE-TYRGQQYSQIYFARLHLMRALLY-SLVPNWKP--H 61
E+ + ++AT + D+ KE +Q++ +Y RL + +L L W H
Sbjct: 11 EQKKCVFERATVKYTDQTDRFSKEGDNYTKQFASLYVKRLEELYPILKEKLTKKWGKDVH 70
Query: 62 LPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE-RSTTPLVKPHNFMHPDDHLVL 120
L + +E + G+ C IIGTLYKH KPSIL E S+E + T P+ KP ++ +D L L
Sbjct: 71 LIPLSDIEDQHGKRCAIIGTLYKHQPNKPSILQELSEEHQMTVPVPKP-DYCSDEDQLFL 129
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
ED++ R++L G ++ VTG+V A+ G E F V D A + + + +
Sbjct: 130 EDQTSRIRLTGDKVNVRESVTGVVCAVIGSENQKSTFEVEDWCFADCPIGRSVTIK--DK 187
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE----- 235
+V +SGL + S N L LLV+ + G GD + Q A IV VVIAGNSI+
Sbjct: 188 GKLVFISGLELASTPQN-LPLNLLVEWLGGLAGDPELQEDEASIVRVVIAGNSIKGCADQ 246
Query: 236 -IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
+ +GLL+G+ + + LD L I + + +MPG D +PQ+ ++
Sbjct: 247 HLSKGLLSGKAEDAAAAKDMANGTHRLDTFLETIGSNCCITLMPGQFDNTTLMMPQRAMH 306
Query: 295 RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS--EANDQLEFMERTLR 352
FP + + + TNP ++ +GTSGQ I ++QK + + +E++ER+L
Sbjct: 307 PASFPNARKLKSIKGVTNPWVGQVSERVIVGTSGQPIQNIQKVCGLDTLESIEWLERSLE 366
Query: 353 WRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPK 412
WRH+ PTAP+T+ C PF DPF++ CP +YF+GN +KFET+L KG++ Q VRL+CIPK
Sbjct: 367 WRHMCPTAPDTIPCMPFYKSDPFVLRECPDIYFSGNMEKFETKLYKGNNGQKVRLLCIPK 426
Query: 413 FSETGVAVVVNLKNLECHTLSFGTQ 437
F++T AV+V+L+ L+ +SFG +
Sbjct: 427 FAKTQTAVLVDLQTLDAIPISFGAE 451
>gi|452980265|gb|EME80026.1| hypothetical protein MYCFIDRAFT_155847 [Pseudocercospora fijiensis
CIRAD86]
Length = 502
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/449 (34%), Positives = 234/449 (52%), Gaps = 49/449 (10%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY+ +YF RL ++ + S+ I VL++ +G C +IGT++
Sbjct: 50 QQYADMYFTRLAQLKPAVESIASEAFSDFHIGGEQARKVDRVLDVRQGHLCWVIGTVFVE 109
Query: 86 MKLKPSILDEYSKER--STTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143
M LKP++L++ KE + P + +N + ++LEDESGR+KL G L VTG
Sbjct: 110 MPLKPNVLEDIGKEHWIAAPPARQKYNPGEGNVSMMLEDESGRLKLTGGFLASVLLVTGA 169
Query: 144 VVALHGKETSAGEFLVLDVL----------------DAGLAPQKELPLNSGEDKYVVLVS 187
+VA+ G E S G+F VLD+ DA L +K K V +VS
Sbjct: 170 IVAVLGTENSDGDFEVLDIRVPDLPRQPQRWERDDGDAALKGKKASQKRESGGK-VAIVS 228
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI----------EIP 237
GL++ + L +L +++ G G EQ A++I ++IAGN++ E+
Sbjct: 229 GLSISGDDGDTLMLDMLAEYLLGEAGGLDEQSAASQISRLIIAGNTLAHGQPIPSREEVA 288
Query: 238 RGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
+G+ D S P + LD + + +P+ ++PG DP + +LPQQP++
Sbjct: 289 AAKKSGKRTYGYDASAYNANPTERLDSYMASLLPSIPITLLPGLTDPTSTALPQQPIHPA 348
Query: 297 LFPGSATYNT-----------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE 345
+F Y F S TNP F+L RFLG GQT++D+ KY + ++LE
Sbjct: 349 MFTRCRAYMAAPLATETDSPWFDSTTNPAEFDLQGWRFLGAGGQTVEDVYKYVDGEERLE 408
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLV 405
ME LRWR APTAP+TL C+PF D D F+++ CPHVYFAG Q FE+ ++G QLV
Sbjct: 409 MMEAMLRWRLSAPTAPDTLWCFPFQDGDKFVIQECPHVYFAGCQPNFESSTIEGPHGQLV 468
Query: 406 RLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+L+ +P F ETG V+++L+ L ++F
Sbjct: 469 KLIAVPSFKETGQVVLMDLEELSVEVVTF 497
>gi|328859185|gb|EGG08295.1| hypothetical protein MELLADRAFT_35023 [Melampsora larici-populina
98AG31]
Length = 480
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/413 (35%), Positives = 240/413 (58%), Gaps = 17/413 (4%)
Query: 35 QYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
Q+S +Y+ RL +++ L S WK +L++ G++ V+IGT+Y +K KP++L
Sbjct: 35 QFSNLYYQRLLKLKSNLQSSSKVKWKDEFKSVRILDILVGQKMVVIGTVYCDLKFKPNVL 94
Query: 94 DEYSKERSTTPLVKPHNFMHPDDH---LVLEDESGRVKLGGAELLPSAYVTGIVVALHGK 150
D+ S+E STT +K ++ DD ++LEDESGR+KL +VTG V+A+ G+
Sbjct: 95 DDLSREVSTTSSLK--KWVSKDDQQITVMLEDESGRIKLLFDHPEEFNFVTGTVMAVLGE 152
Query: 151 ETSAGEFLVLDVLDAGLAPQKELPLNSGEDK--YVVLVSGLNVGSGTSNPL--QFQLLVD 206
ET G+F V ++++AG+ Q E+K +V ++SGL++ + L + ++L D
Sbjct: 153 ETENGDFKVHEIVNAGVPKQSIRSDLKEEEKEAWVGIISGLDLDGIEAIRLDHRCEVLSD 212
Query: 207 HITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLN--GQNLASKDQSRLFEPIKELDIL 264
+ G +G E+E+ + + ++IAGNS+ N + S PI+ LD +
Sbjct: 213 WLNGQIGSEEEKSLGLSVSRLIIAGNSVRASSSSSNPIKKRYGYDPSSYTALPIERLDQV 272
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---ATYNTFRSCTNPHCFELDNV 321
L +I +P+D++PG NDP +LPQQPL++CL P S N + NP ++
Sbjct: 273 LAEI--DLPIDLIPGSNDPTTQALPQQPLHQCLLPKSNFEKQNNNLVNGPNPWWAKIGGQ 330
Query: 322 RFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCP 381
FLGTSGQ +DD+ +Y D+L+ + L W H++PT+P+TL CYPF D DPF++E P
Sbjct: 331 TFLGTSGQNLDDVYRYVTHEDRLKLAIQMLEWNHISPTSPDTLWCYPFKDHDPFILEELP 390
Query: 382 HVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
V+F GNQ KFET L+ +++ +P+FS+TG+ V++ LEC +++
Sbjct: 391 KVFFIGNQPKFETELVTFPSDDQTKMILVPRFSKTGIIVLIKPSTLECKSITL 443
>gi|58263352|ref|XP_569086.1| DNA polymerase Delta, small subunit [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108624|ref|XP_776965.1| hypothetical protein CNBB4930 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259648|gb|EAL22318.1| hypothetical protein CNBB4930 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223736|gb|AAW41779.1| DNA polymerase Delta, small subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 510
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 247/478 (51%), Gaps = 61/478 (12%)
Query: 12 RKQATYIFLDE---PFEIQ--KETYRGQQYSQIYFARLHLMR-ALLYSLVPNWK------ 59
R A+Y L E PF I +Y+ QY+ IYF RL R A+ WK
Sbjct: 15 RPAASYDPLTELSKPFTIDPASRSYK-HQYANIYFVRLVEQRPAVEKKATEKWKDVKGNP 73
Query: 60 PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLV 119
P LP +L L + C I+GT+Y M LKP+IL++ +++ + F D +
Sbjct: 74 PLLP--RILNLTRSQLCYIVGTVYMEMPLKPNILEDMARDHWLAAPIPRTKFFSAQDSIH 131
Query: 120 LEDESGRVKLGGAELL------PSAYVTGIVVALHGKETSAGEFLVLDVLDAGL------ 167
LEDESGRV+L G + VTG+++A G ET +G+F V+D+ AG+
Sbjct: 132 LEDESGRVRLIGDAIQRERDREGGGLVTGVIMAALGMETPSGDFEVIDICFAGMPDKLVL 191
Query: 168 --APQK-----------------------ELPLNSGEDKYVVLVSGLNVGSG-TSNPLQF 201
AP ELP N+ ++ +VSGL++G+ S L+
Sbjct: 192 NPAPSSAKRKGKEKVENDEDIDMQEDAKIELPENA--KTWIAMVSGLSIGTQEASTDLKA 249
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR--LF--EP 257
++LV+ + G +G +Q I ++IAGNS+ +P + + + + + LF P
Sbjct: 250 EMLVEWLMGEIGGHSDQLGGGRIARLIIAGNSLTLPVKGEDDKKIKRFNSTSKPLFPNHP 309
Query: 258 IKELDILLTQ-IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF 316
K L L +++ +P+ ++PGP+DPA +LPQQPL + LF G A TNP
Sbjct: 310 TKTLATLFADLLSSSLPIHLIPGPSDPAGATLPQQPLPKILFGGKAKTEGLECETNPTWM 369
Query: 317 ELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
E+ FL T GQ IDD+ KY N +L +RTL WRH+APTAP+TL YPF D DPF+
Sbjct: 370 EVGGRSFLTTGGQAIDDIFKYVPGNSRLGMTQRTLEWRHMAPTAPDTLWIYPFPDTDPFI 429
Query: 377 VESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+ P VY GNQ +FET ++ G + RLV +P F++TGV V L+ LEC TL F
Sbjct: 430 MNYRPDVYIVGNQPEFETTII-GDEDAPTRLVLLPSFAKTGVIAFVCLETLECRTLEF 486
>gi|296421699|ref|XP_002840402.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636617|emb|CAZ84593.1| unnamed protein product [Tuber melanosporum]
Length = 430
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/387 (39%), Positives = 239/387 (61%), Gaps = 16/387 (4%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD-DHLVLEDESG 125
VLE+ +G C I+GT+Y M LKP+IL++ +K++ ++ P D +LEDESG
Sbjct: 37 VLEVRQGELCWIVGTIYMEMPLKPNILEDITKDQWIAAPPPRDKYVTPGADQTMLEDESG 96
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKY-- 182
R++L G L VTG+VV + G ET G+F V+DV+ L PQ+ +L + G++K
Sbjct: 97 RLRLVGRALEKECLVTGVVVGVMGTETKDGDFDVVDVIVPELPPQENKLDIGEGKEKKGG 156
Query: 183 ---VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS----IE 235
V LVSGL+ + +LL +++ G +G ++Q A++I ++IAGNS +
Sbjct: 157 RRKVALVSGLSFKGNAMENFETELLAEYLLGEVGGVEDQESASKITRLIIAGNSLAPVVA 216
Query: 236 IP--RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
+P +G + + P+ LD LLT + +P+ I+PGP DPAN SLPQ+PL
Sbjct: 217 LPPVKGEEKHKKYGYDSTTYNANPVLALDNLLTTLLPSLPVTILPGPTDPANVSLPQKPL 276
Query: 294 NRCLFPGSATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTL 351
+ +F + Y ++ + TNP C ++D ++FLGT+GQ +DD+ KY E D+L ER L
Sbjct: 277 HPAIFRNAKHYAASSLHTATNPCCVDIDGLKFLGTAGQNLDDVYKYVEGEDRLGMCERLL 336
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK-GSDRQLVRLVCI 410
RWR +APTAP+TL +PF D+D ++++ CPHV+F GNQ++F +RL++ G QL R++ +
Sbjct: 337 RWRCVAPTAPDTLWSFPFEDKDMYVIKECPHVFFIGNQEEFASRLVEVGPQNQLCRIILV 396
Query: 411 PKFSETGVAVVVNLKNLECHTLSFGTQ 437
PKFSET V+++L LEC ++ FG +
Sbjct: 397 PKFSETNEVVLLDLDTLECESVRFGVE 423
>gi|321252422|ref|XP_003192401.1| DNA polymerase delta, small subunit [Cryptococcus gattii WM276]
gi|317458869|gb|ADV20614.1| DNA polymerase delta, small subunit, putative [Cryptococcus gattii
WM276]
Length = 508
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 244/463 (52%), Gaps = 48/463 (10%)
Query: 18 IFLDEPFEIQ--KETYRGQQYSQIYFARLHLMRALLYSLV----PNWKPHLPIC-TVLEL 70
I L +PF I +Y+ QY+ IYF RL R + N K H P+ +L L
Sbjct: 24 IELSKPFTIDPASRSYK-HQYANIYFVRLVEQRPTVEEKAREKWKNVKGHPPLLPRILNL 82
Query: 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLG 130
+ C I+GT+Y M LKP+IL++ +++ + + F D + LEDESGRV+L
Sbjct: 83 TRSQLCYIVGTIYMEMPLKPNILEDMARDHWLSAPIPRTKFFSAQDSVHLEDESGRVRLI 142
Query: 131 GAELLP------SAYVTGIVVALHGKETSAGEFLVLD----------VLDAGLAPQK--- 171
G + VTG+++A G ET +G+F V+D VLD+G + K
Sbjct: 143 GDVIQKERDREGGGLVTGVIMAALGMETPSGDFEVIDICFAGMPDKLVLDSGPSNAKGKG 202
Query: 172 --------------ELPLNSGEDKYVVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGDEK 216
E+ L+ E +V +VSGL++G+ + L+ ++L++ + G +G
Sbjct: 203 RAEGDEDVDMQEDAEIELSDSEKTWVAMVSGLSIGTQEAPTDLKAEMLIEWLMGEIGGPS 262
Query: 217 EQGIAAEIVHVVIAGNSIEIP-RGLLNGQNLASKDQSR-LF--EPIKELDILLTQI-AAG 271
+Q I ++IAGNS+ +P +G + + SR LF P K L L + +
Sbjct: 263 DQLDGGRIARLIIAGNSLTLPVKGEDDKKIKRFNSTSRPLFPNHPTKTLATLFADLLSTS 322
Query: 272 VPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTI 331
+P+ ++PGP+DPA +LPQQPL + LF G A TNP E+ FL T GQ I
Sbjct: 323 LPIHLIPGPSDPAGATLPQQPLPKILFGGKAKTEGLECETNPTWMEVGGRSFLTTGGQAI 382
Query: 332 DDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQK 391
DD+ KY +L +RTL WRH+APTAP+TL YPF D DPF+++ P VY GNQ +
Sbjct: 383 DDIFKYIPGKSRLGMTQRTLEWRHMAPTAPDTLWIYPFPDADPFIMKHRPDVYIVGNQPE 442
Query: 392 FETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
FET ++ G D RLV +P F++TG V L+ LEC TL F
Sbjct: 443 FETTIIGGDDAP-TRLVLLPSFAKTGTLAFVCLETLECKTLEF 484
>gi|330923754|ref|XP_003300360.1| hypothetical protein PTT_11594 [Pyrenophora teres f. teres 0-1]
gi|311325535|gb|EFQ91548.1| hypothetical protein PTT_11594 [Pyrenophora teres f. teres 0-1]
Length = 560
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/445 (34%), Positives = 235/445 (52%), Gaps = 48/445 (10%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-W-------KPHLPICTVLELEEGRECVIIGTLYKH 85
QQ++ +YF RL ++ + L W K + VL++ G C ++GT+Y
Sbjct: 48 QQFADMYFLRLMQLKKTVKQLAEEAWRGFELDDKKASFVERVLDVRRGELCWVVGTVYME 107
Query: 86 MKLKPSILDEYSKER--STTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143
M KP++LD+ K+ + P + D ++LEDESGR+++ G E L VTG
Sbjct: 108 MAGKPNVLDDIEKDNWIADPPHRDTYVSASGGDEMMLEDESGRLRVSG-EPLQGRVVTGC 166
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQ---------------KELPLNSGEDKYVVLVSG 188
++A G E G FLV+ + A L Q KE+P K V +VSG
Sbjct: 167 ILAALGTEQDDGSFLVIAIQYADLPRQPPRWERDDIALSKQKKEIPKRERAGK-VAIVSG 225
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS 248
L + + + LLV+++TG D Q + ++I ++IAG S++ +L+ ++ A+
Sbjct: 226 LELTGADDDAISLDLLVEYLTGEAADPTTQALTSQITRLLIAGGSLQHGSPILSREDFAA 285
Query: 249 KD----------QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
K S P + LD L+ I +P+ ++PG NDP+N +LPQQPL+ LF
Sbjct: 286 KKAAARHYGYDASSYNSAPTERLDDFLSDILPTLPITMLPGTNDPSNVALPQQPLHPALF 345
Query: 299 PGSATY-----------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFM 347
P + Y N F + TNP ++D R LGT GQT+ DL KY + +E M
Sbjct: 346 PKTRLYAEPPIESNESLNGFDAVTNPWTGDIDGYRVLGTGGQTVSDLLKYLKGVTPVEAM 405
Query: 348 ERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRL 407
E+ LRWR +APTAP+TL CYPF D DP ++ CPH+Y AG Q+KFE + + G Q V L
Sbjct: 406 EKMLRWRCVAPTAPDTLWCYPFQDGDPLMMTECPHIYIAGCQRKFEAKTITGPAGQKVLL 465
Query: 408 VCIPKFSETGVAVVVNLKNLECHTL 432
V +PKFS +G V+V++++ + +
Sbjct: 466 VSVPKFSTSGKIVLVDMESWDVEVV 490
>gi|195011536|ref|XP_001983197.1| GH15719 [Drosophila grimshawi]
gi|193896679|gb|EDV95545.1| GH15719 [Drosophila grimshawi]
Length = 435
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 235/438 (53%), Gaps = 20/438 (4%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLE 69
+R + Y L F +Q Y+ +Q+ +Y RL MR LL L + W +PI + E
Sbjct: 3 KRLECPYENLSSCFLLQTSDYQ-KQFCHLYTHRLAEMRRLLTPLAKSKWDNQVPIMKLCE 61
Query: 70 L--EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
L E+ C+IIGT+YKH KPSIL + S+E P + N+ P+D ++LEDE RV
Sbjct: 62 LRGEQNVNCIIIGTIYKHQAHKPSILRDISEENQLAPQPQRKNYSEPEDKVILEDELQRV 121
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
+L G L TGIV A+ G S G V +VL PQK L L S K +V++S
Sbjct: 122 RLQGDILDGRNLATGIVCAVKGGTDSDGYLNVEEVLFLESGPQKSLALRSNAGK-LVIIS 180
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI------EIPRGLL 241
GL+ + + ++G LG+ A +V +++AGNS+ E+P +
Sbjct: 181 GLDQLQSHNYVDALNMFQYWLSGSLGNTVR---AQSMVRLIVAGNSVRSTALVELPTLQV 237
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + I +LD A + +D+MPG DPANF PQQP ++C+FP +
Sbjct: 238 ARSQANANDT---VQAIAQLDTWFAAWARALHVDLMPGAFDPANFMFPQQPFHKCMFPLA 294
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
++F+S NP+ L+ +GT+GQ ++DL + + L + TL+W HLAPTAP
Sbjct: 295 GQLSSFQSVPNPYSCRLNGAHVMGTAGQNVEDLLSSTSLDSSLLALSSTLKWGHLAPTAP 354
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQ---LVRLVCIPKFSETGV 418
+TL YP+ DPF+++ CPHVYFAGN F+T LL+ S ++ RLVC+P FS T
Sbjct: 355 DTLASYPYIGSDPFIMQECPHVYFAGNCASFDTELLEDSRKESSKRTRLVCVPSFSRTQS 414
Query: 419 AVVVNLKNLECHTLSFGT 436
+++L L+C + F
Sbjct: 415 VALIDLDTLDCREIKFSV 432
>gi|406606925|emb|CCH41647.1| DNA polymerase delta subunit 2 [Wickerhamomyces ciferrii]
Length = 453
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 158/444 (35%), Positives = 246/444 (55%), Gaps = 51/444 (11%)
Query: 19 FLDEPFEIQKETYRGQQYSQIYFARL-HLMRALLYSLVPNWKPHLPICTV-------LEL 70
F D P+ G+QY+ IY RL HL +L++ W + L++
Sbjct: 35 FNDRPY--------GKQYASIYATRLAHLRPRVLHNAKKKWGEEVVNGKKVVKKEKVLDI 86
Query: 71 EEGRECVIIGTLYKHMKLKPSILDEYSK--ERSTTPLVKPHNFMHPD-DHLVLEDESGRV 127
++GT++ MK KP+ILDE S + + T + + PD D ++LEDESGRV
Sbjct: 87 HSDEPSWVVGTIFCDMKYKPNILDEVSSGIQGADTSI---KTYTDPDLDQIMLEDESGRV 143
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
L G + + VTG VV + G E+ G F V+D++ + QK P K V +VS
Sbjct: 144 ALEGDLVKNTILVTGTVVGILGMESRPGVFQVVDIVYPFTSAQK--PTRKSSSK-VAIVS 200
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--- 244
GL+ S ++ + L D++TG LG E + ++ ++IAGNS+ L++G+
Sbjct: 201 GLHFNGLES--IKHEALKDYLTGELGLETSKSVS----RLIIAGNSV-----LVSGEPEV 249
Query: 245 ----NLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
+K++S + I +LD LT +P+D+MPG +DPA SLPQQPL++ F
Sbjct: 250 DEKNKYGAKNKSNFSLDSITQLDTFLTDTLQSIPIDMMPGESDPAETSLPQQPLHKAFFQ 309
Query: 300 GSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----SEANDQLEFMERTLR 352
S Y +TFR+ TNP + D +R LGTSG+ I+D+ KY S + ++ +E T+
Sbjct: 310 KSKAYLNTSTFRTITNPAWIQYDELRLLGTSGENINDIYKYVVPNSVQDSRINMIEATMV 369
Query: 353 WRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPK 412
W+++ PTAP+TL CYP++D+DPF + PHVYF GNQ K+ET++L+ + V+L+ IP
Sbjct: 370 WQNIIPTAPDTLWCYPYSDKDPFSLTETPHVYFVGNQPKYETKMLQLDNTTKVKLIAIPT 429
Query: 413 FSETGVAVVVNLKNLECHTLSFGT 436
FSETG V+++ LE ++ +
Sbjct: 430 FSETGQFVILDTDTLESEVITLDS 453
>gi|402081179|gb|EJT76324.1| DNA polymerase delta small subunit [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 510
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 169/482 (35%), Positives = 257/482 (53%), Gaps = 62/482 (12%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR--------ALLYSLVPNW 58
+A L+R ++Y LD F + K QQY +YF RL ++R A ++
Sbjct: 22 QAALERLLSSYKPLDS-FVLPKNRQYKQQYGDMYFLRLTMVRPAVEQVASAAFGDVIIGG 80
Query: 59 KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--D 116
+P + VL++ +G C + GT+Y M LKP+IL++ +K+R + ++ D D
Sbjct: 81 EPAQKVERVLDVRQGELCWVTGTVYMDMPLKPNILEDVAKDRWISAPPTAQKYISEDGQD 140
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL--- 173
++LED+SGRV+L G L + VTG ++A+ G E + G+F V+DV LAPQ +
Sbjct: 141 SIMLEDDSGRVRLVGDVLEGAILVTGCIIAVMGTENADGDFEVIDVRYPDLAPQPDRWAL 200
Query: 174 ---PLNSGEDKY-----------------------VVLVSGLNV-GSGTSNPLQFQLLVD 206
P +G+ K + +VSGLN G+ TS L+ LL++
Sbjct: 201 SNPPTANGKSKATKKEASEDIDMEGSSAPRGSQGKIAIVSGLNFSGTDTSYALELNLLLE 260
Query: 207 HITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ---------SRLFEP 257
++ G + D QG + I ++IAGNSI P + +D+ S + P
Sbjct: 261 YLLGEVLDPAAQGELSHISRLIIAGNSIA-PEDASKSISTEGEDKKAHRKYGYDSSAYNP 319
Query: 258 IKE--LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF---------PGSATYNT 306
+ LD L+++ +P+ IMPG +DPAN SLPQQP++ ++ PG A
Sbjct: 320 VPSQLLDSFLSELLPSMPITIMPGQHDPANASLPQQPVHPAMYDKSRAFIAAPGGADPGW 379
Query: 307 FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGC 366
S TNP E+D RFLG SGQ +DD+ KY ++D+L ME RWR APTAP+TL
Sbjct: 380 LDSVTNPWEGEVDGWRFLGASGQNVDDVFKYVSSDDRLGMMELMCRWRCTAPTAPDTLWS 439
Query: 367 YPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
YPF D DPF++ CPH+YF G+Q +F T+ + G + Q VRLV +P FS++ V+V+ +
Sbjct: 440 YPFQDNDPFIMNQCPHLYFVGSQPEFGTKTITGPEGQSVRLVTVPTFSKSREIVLVDTET 499
Query: 427 LE 428
L+
Sbjct: 500 LD 501
>gi|325181440|emb|CCA15856.1| DNA polymerase alpha/epsilon subunit B putative [Albugo laibachii
Nc14]
Length = 477
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 159/453 (35%), Positives = 255/453 (56%), Gaps = 50/453 (11%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC-TVLE 69
+R++ Y L + F +K++Y QQYS +Y RLH++R L + + +P+ +++
Sbjct: 5 ERQRVDYTPLYQRFVYKKKSYT-QQYSHLYVNRLHVLRKRLSQTISADRNDVPLLPKIID 63
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDE-YSKERSTTPLVKPHNFM--HPDDHLVLEDESGR 126
L+ G C+I GT+ K +K KP + + S E+S L+ +D ++LED+SGR
Sbjct: 64 LQAGVRCIITGTVLKVLKNKPRLFEALISSEQSIDSLLNIGKLASDQGEDQIILEDDSGR 123
Query: 127 VKLGGAELLPSAYVTGIVVALHGK--ETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVV 184
V+L G P VTG+VVA+ G+ E +G F V V + PQK L + + + +YV
Sbjct: 124 VELSGDMFDPDVLVTGVVVAVQGQLGEEVSG-FQVQKVFYPYMKPQKPL-VRTTKSQYVA 181
Query: 185 LVSGLNVGSGT--SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-------- 234
LVSGL++GSG+ +P++ QLL D++ G +G +E + IVH +I GNS+
Sbjct: 182 LVSGLSIGSGSISGHPVRTQLLFDYLAGRIGTGEELSFVSSIVHTIIVGNSVSSAPPADS 241
Query: 235 ------EIPRGLLNGQNLASKDQSRLFE---------PIKELDILLTQIAAGVPLDIMPG 279
E P + + K + + P+++ D LL+ + + +D+MPG
Sbjct: 242 VRRNPYESPTCVTISTSFDRKKDKKASQIQEYEVTATPLRDFDQLLSTLVCTMRVDLMPG 301
Query: 280 PNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS- 338
+DP+N+SLPQQ + CL P S++Y++ R TNP+ E+ N+RFLG +GQ ++ + + +
Sbjct: 302 HSDPSNYSLPQQAFHECLLPNSSSYSSLRLVTNPYDAEVGNIRFLGHAGQPVESIMQSTG 361
Query: 339 --------------EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVY 384
++ L+ +ER L W HLAPTAP+ L C+P DPF+V+ PHV+
Sbjct: 362 NGIQELDTCHPSKVAKDNVLDCLERCLLWNHLAPTAPDMLSCFPAAQDDPFIVDEMPHVF 421
Query: 385 FAGNQQKFETRLLKGS-DRQLVRLVCIPKFSET 416
FAGNQ+ FETR+ G+ + VR+V +P FSET
Sbjct: 422 FAGNQKHFETRMWNGAGNENGVRIVSVPSFSET 454
>gi|389623199|ref|XP_003709253.1| DNA polymerase delta small subunit [Magnaporthe oryzae 70-15]
gi|351648782|gb|EHA56641.1| DNA polymerase delta small subunit [Magnaporthe oryzae 70-15]
gi|440465856|gb|ELQ35156.1| DNA polymerase delta small subunit [Magnaporthe oryzae Y34]
gi|440486477|gb|ELQ66338.1| DNA polymerase delta small subunit [Magnaporthe oryzae P131]
Length = 497
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 254/470 (54%), Gaps = 49/470 (10%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARL--------HLMRALLYSLVPNW 58
E L+R+Q++Y L + F + KE QQY +YF RL + LV
Sbjct: 22 EIPLERRQSSYKSL-KTFALDKEKQYQQQYGDMYFLRLTKIKPAVEEIASTAFGDLVIGG 80
Query: 59 KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--D 116
+P + VL++ +G C + GT+Y M LKPSIL++ +K+R + + D D
Sbjct: 81 EPARQVPRVLDVRQGELCWVAGTVYMDMPLKPSILEDVAKDRWISAPTSVQKYFSKDGRD 140
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE-LPL 175
++LED+SGRV+L G L VTG ++A+ G E ++GEF V+D+ LAPQ E L
Sbjct: 141 SILLEDDSGRVRLVGDILKSVVLVTGCIIAVMGTENASGEFEVIDLKFPDLAPQPERWSL 200
Query: 176 NSGEDKYV--------------VLVSGLNVGS-GTSNPLQFQLLVDHITGHLGDEKEQGI 220
+ D V ++SGLN S TS ++ LL++++ G D Q
Sbjct: 201 SKPADDDVEMGNGGYSSNRGKTAILSGLNFSSTDTSYAMELNLLLEYLLGDALDPIAQKD 260
Query: 221 AAEIVHVVIAGNSIEIPRGL------LNGQNLASK---DQSRLFEPIKE--LDILLTQIA 269
++I +++AG+SI G + G+ + K D S + PI LD L+++
Sbjct: 261 ISQISRLIVAGDSISPDTGKPAAEEEVAGKKVHKKYGYDASS-YNPIPSQLLDEFLSELL 319
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT----------FRSCTNPHCFELD 319
+P+ +PG +DPAN S PQQP++ +F S TY+ F + TNP E++
Sbjct: 320 PTIPVTFLPGAHDPANASYPQQPIHPAMFTKSRTYSALPGPTAEPGWFDTVTNPWEGEVE 379
Query: 320 NVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES 379
R LGTSGQ +DD+ KY +++D+L ME RWR APTAP+TL YPF D DPF++
Sbjct: 380 GWRVLGTSGQNVDDVFKYVDSDDRLGMMEAMCRWRCSAPTAPDTLWSYPFQDDDPFVMNQ 439
Query: 380 CPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
CPH+YF GNQ +F T+ + G++ Q VRL+ +P FS + V+V+ + LE
Sbjct: 440 CPHLYFVGNQPEFGTKTITGTEGQEVRLITVPTFSASRELVLVDNETLEV 489
>gi|346976885|gb|EGY20337.1| DNA polymerase subunit delta-2 [Verticillium dahliae VdLs.17]
Length = 503
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 252/487 (51%), Gaps = 55/487 (11%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-W---- 58
D E +L R +TY L F ++K+ QQ++ +YF RL ++ + + W
Sbjct: 16 DSETTQLARAPSTYKPL-ATFLLKKDRSYQQQFADVYFLRLTRIKPAVEKIAAEAWDGTV 74
Query: 59 ---KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD 115
+P + VL++ +G C + GT+Y M+LKP+IL++ SK+R + + + D
Sbjct: 75 IGGEPAKQVNRVLDVRQGELCWVAGTIYMEMRLKPNILEDVSKDRWISAPISTEKYYSDD 134
Query: 116 DH--LVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ--- 170
D +++ED+SGR++L G L VTG V+A+ G E + GE V+D+ A +APQ
Sbjct: 135 DQDQVMIEDDSGRIRLVGDVLKTVNLVTGCVIAVMGSENANGELEVIDIKFADIAPQPER 194
Query: 171 ---------------------KELPLNSGEDKYVVLVSGLNV-GSGTSNPLQFQLLVDHI 208
K+ P + +VSGL+ G S ++ LL++++
Sbjct: 195 WDLTKPPSNGKQQVKDEDEEMKDAPTAESGGSKIAIVSGLSFSGHDASYAVELDLLLEYL 254
Query: 209 TGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKD--------QSRLFEPIKE 260
G D Q A+ I ++IAGNSI + + K S + P+
Sbjct: 255 LGESLDPSAQKEASNISRLIIAGNSISLTEAPKLDPSATDKKPVTKKYGYDSSTYNPVPS 314
Query: 261 --LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------FRS 309
LD L ++ +P+ ++PG DPAN S PQQP++ +FP + ++ F +
Sbjct: 315 QLLDDFLAELLPSMPITLLPGAQDPANASYPQQPIHTAMFPKARPWSVHPDANEAGWFDN 374
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP E+D R LGT GQ +DD+ KY ++ D+L ME RWR APTAP+TL YPF
Sbjct: 375 TTNPWEGEIDGWRVLGTGGQNVDDVFKYIDSEDRLGMMEAMCRWRCSAPTAPDTLWSYPF 434
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
D DPF+++S PH+YF G Q +F T++++G + Q +RL+ +P FSET V+V+ + LE
Sbjct: 435 QDDDPFVIKSAPHLYFVGCQPEFSTKVVQGPEGQQIRLITVPSFSETKEVVLVDTETLEV 494
Query: 430 HTLSFGT 436
+ T
Sbjct: 495 SKVRIST 501
>gi|189193957|ref|XP_001933317.1| DNA polymerase subunit delta-2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978881|gb|EDU45507.1| DNA polymerase subunit delta-2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 530
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 154/445 (34%), Positives = 234/445 (52%), Gaps = 48/445 (10%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-W-------KPHLPICTVLELEEGRECVIIGTLYKH 85
QQ++ +YF RL ++ + L W K + VL++ G C ++GT+Y
Sbjct: 45 QQFADMYFLRLMQLKKTVKQLAEEAWHGFELDDKKASFVERVLDVRRGELCWVVGTVYMD 104
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAELLPSAYVTGI 143
M KP++LD+ K+ ++ P D ++LEDESGR+++ G E L VTG
Sbjct: 105 MAGKPNVLDDIEKDNWIADPPHRDTYVSPSGGDEMMLEDESGRLRVSG-EPLQGRVVTGC 163
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQ---------------KELPLNSGEDKYVVLVSG 188
++A G E G FLV+ + A L Q KE+P K + +VSG
Sbjct: 164 ILAALGTEQDDGSFLVIAIQYADLPRQPPRWERDDIALSKHKKEVPKRERAGK-LAIVSG 222
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS 248
L + + + LLV+++TG D Q + ++I ++IAG S++ +L+ ++ A+
Sbjct: 223 LELTGADDDAISLDLLVEYLTGEAADPTTQALTSQITRLLIAGGSLKQGSPILSREDFAA 282
Query: 249 KD----------QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
K S P + LD L I +P+ ++PG NDP+N +LPQQPL+ LF
Sbjct: 283 KKAAARHYGYDASSYNSAPTERLDDFLCDILPTLPITMLPGTNDPSNVALPQQPLHPALF 342
Query: 299 PGSATY-----------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFM 347
P + Y N F + TNP ++D R LGT GQT+ DL KY + +E M
Sbjct: 343 PKARLYAEPPIESNESLNGFDAVTNPWTGDIDGYRVLGTGGQTVSDLLKYLKGVGPVEAM 402
Query: 348 ERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRL 407
ER LRWR +APTAP+TL CYPF D DP ++ CPH+Y AG Q+KFET+ + G Q V L
Sbjct: 403 ERMLRWRCVAPTAPDTLWCYPFQDGDPLMLTECPHMYVAGCQKKFETKTITGPAGQKVLL 462
Query: 408 VCIPKFSETGVAVVVNLKNLECHTL 432
V +PKFS + V+V++++ + +
Sbjct: 463 VSVPKFSTSRKIVLVDMESWDVEVV 487
>gi|320590996|gb|EFX03435.1| DNA polymerase delta subunit [Grosmannia clavigera kw1407]
Length = 532
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 169/507 (33%), Positives = 251/507 (49%), Gaps = 84/507 (16%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSL--------VPNWKPHLP 63
R Q+ Y L F + + QQ+ +YF RL ++ + + + +P
Sbjct: 24 RSQSAYRSLQR-FRLASDRPYQQQFGDMYFLRLAKIKPAVEKVAVEAFGDVIVAGEPPKQ 82
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKER--STTPLVKPHNFMHPDDHL--- 118
+ VL++ +G C + GT+Y M KPSILD+ SK+R S P VK + DD L
Sbjct: 83 VDRVLDVRQGEFCWVAGTVYMDMPFKPSILDDVSKDRLLSLPPDVKKYIPEDGDDDLLAE 142
Query: 119 -------VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ- 170
+LEDESGR++L G L VTG + A+ G E GE VLD++ L PQ
Sbjct: 143 GRGSVSVMLEDESGRIRLVGKALRSVLLVTGCIAAVMGTENENGELEVLDIVFPDLPPQP 202
Query: 171 ---------------KELPL------------------------------NSGEDKYVVL 185
K+ P +S + +
Sbjct: 203 ARWELSGPPTGDEAEKQPPTKRVKVEEEDDDDDLDMDDDGHTDHKQTQRSSSSSGNKIAI 262
Query: 186 VSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLN-G 243
VSGL G + ++ LL++++ G Q AA I +++AGNSI G
Sbjct: 263 VSGLRFSGPHGAAAVETALLLEYLLGEALSPASQRAAARISRLIVAGNSIVAAPVAAAAG 322
Query: 244 QNLASKD---QSRLFEPIKE--LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
+ +K S ++P+ LD L Q+ +P+ +MPGP+DP+N S+PQQP++ +F
Sbjct: 323 ERQPTKKYGYDSSTYDPVPSAMLDEFLAQLLPSMPVTLMPGPDDPSNASIPQQPVHAAMF 382
Query: 299 PGSATYNT----------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFME 348
P + ++T + TNP E+ R LGTSGQT+DD+Q+Y +++D+L ME
Sbjct: 383 PQARAFSTANETAAEPGSLDAVTNPWEGEVAGWRILGTSGQTLDDMQRYVQSSDRLGMME 442
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
T RWR APTAP+TL YPF + DPF++++CPHVYFAG+Q +F TRL+ G D Q VRLV
Sbjct: 443 ATCRWRCCAPTAPDTLWSYPFQEDDPFVMDACPHVYFAGSQPEFGTRLISGPDGQEVRLV 502
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSFG 435
+P FSE+ +V+ LE + G
Sbjct: 503 AVPSFSESPEIALVDTDTLEVTRVKIG 529
>gi|426200498|gb|EKV50422.1| hypothetical protein AGABI2DRAFT_183500 [Agaricus bisporus var.
bisporus H97]
Length = 520
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 169/470 (35%), Positives = 256/470 (54%), Gaps = 47/470 (10%)
Query: 9 RLQRKQATYIFLDEP---FEIQK--ETYRGQQYSQIYFARLHLMR-ALLYSLVPNWK--- 59
R R T + L E F I+K ++Y+ QYS IYF RL +R ++ + + WK
Sbjct: 11 RATRAATTVLPLPEATQNFLIRKGNKSYK-HQYSNIYFLRLRSLRQSVEEAALAKWKNLS 69
Query: 60 -PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHL 118
+ + VL++ + C IIGT+Y HM LKP+++ + +++ S P P F +D +
Sbjct: 70 GKPVMVPRVLDVINSQLCYIIGTVYLHMPLKPNVMIDIARDHSIPPPPPPTKFYSDNDSI 129
Query: 119 VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK------E 172
+LEDESGR++L G L VTGI++ + G ET+ G+F V+D+ LAPQ E
Sbjct: 130 MLEDESGRIRLVGEVLKGKNIVTGIIIGVLGAETAEGDFKVVDICFPELAPQAFGEIDLE 189
Query: 173 LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
+++ D+++ VSGL VG TS Q Q+L +++TG G E +Q AA+I ++IAGN
Sbjct: 190 DAMDTDGDEWIGFVSGLEVGKTTSIDAQLQMLTEYLTGEEGGEDDQLSAAKISRLIIAGN 249
Query: 233 S---------IEIPRGLLNGQNLASKDQ--SRLF--EPIKELDILLTQIAAGVPLDIMPG 279
S IE P + A K + + F PI +L L IA +P+ I+PG
Sbjct: 250 SLAPGALAERIETPS---YAERKARKKELDPKTFTPNPIYDLSAYLLDIARVMPIHILPG 306
Query: 280 PNDPANFSLPQQPLNRCLFPGSAT-YNTFRSCTNPHCFELDNV-------RFLGTSGQTI 331
P DP +PQQP R +F ++T ++TF +NP + + L SGQ +
Sbjct: 307 PGDPTGTMMPQQPFPRGIFGDASTRFSTFHLESNPAYINITSTSQPSCKRHILVNSGQPL 366
Query: 332 DDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ 389
DD+ KY + +L +E TLRWRH+APTAP+TL C+P+ DPF++ PH+Y G Q
Sbjct: 367 DDMFKYLPTPPVTRLSVLESTLRWRHMAPTAPDTLWCHPYFVADPFVIRETPHLYVVGGQ 426
Query: 390 QKFETRLLKGSD----RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
+F T L+ R R+V +P F+++G+ VVVN K LE ++F
Sbjct: 427 PEFGTNLITDETQIGRRIKSRIVLVPNFAKSGMLVVVNAKTLEVRCVNFA 476
>gi|392595944|gb|EIW85267.1| hypothetical protein CONPUDRAFT_141916 [Coniophora puteana
RWD-64-598 SS2]
Length = 517
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 247/468 (52%), Gaps = 57/468 (12%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WK----PHLPICTVLELEEGRECVI 78
+ + ++YR QYS IYF RL ++R + N WK L + VL++ + + C I
Sbjct: 25 IDAKDKSYR-HQYSNIYFTRLAMLRGAVEERAKNKWKDVDGSPLFVERVLDVVKSQLCWI 83
Query: 79 IGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSA 138
IGT+Y M LKP++L++ S+ S F +D +++ED SGR+KL GA + S
Sbjct: 84 IGTVYIDMPLKPNVLEDLSRNHSIPAPNPREKFYSSNDSVMIEDSSGRIKLVGAAVTKSR 143
Query: 139 YVTGIVVALHGKETSAGEFLVLDVLDAGLAP-QKELPLN---------SGEDKYVVLVSG 188
VTG++VA G ET G+F V+D+ A LAP +E P N S D+YV +SG
Sbjct: 144 LVTGVIVAALGMETDKGDFEVVDLCFADLAPFAEEAPSNDETMDVDDSSQPDEYVAAISG 203
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS 248
L+ GS S Q Q+LV+ ++G G+ ++Q +A+ I +V+AGNS+ +
Sbjct: 204 LSFGSPVSADSQIQMLVEFLSGEAGEPEDQELASSISRLVVAGNSLIRLTESEDDDEEEL 263
Query: 249 KDQSRLFEPIKE---------LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
K + R P + L L + +P+ I+PGP+DP+ LPQQP R +F
Sbjct: 264 KPKRRYGAPAEATFTPHPNHLLSEHLADLTTFLPVHILPGPDDPSGSILPQQPFPRAMFG 323
Query: 300 GSATYNTFRSCTNPHCFEL---------------------DNVR-FLGTSGQTIDDLQKY 337
+A ++TFR TNP + + VR FL +SGQ I D+ KY
Sbjct: 324 EAAGFDTFRCETNPVWLRVGSGLDPPEHDDDEPSTSKVAGNTVRSFLVSSGQPILDMYKY 383
Query: 338 --SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+ + + TL+WRH+APTAP+TL C+PF ++DPF++ P VY GN +F T
Sbjct: 384 LPTPPSTLVTMAASTLKWRHMAPTAPDTLWCHPFREKDPFVLRQTPDVYIIGNMPQFGTT 443
Query: 396 LLKGSDR--------QLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
L+ D+ + R+V +P F ETGV V+VNL++L + FG
Sbjct: 444 LVYAGDKTEGRTTEDRPCRVVLVPSFLETGVLVLVNLRSLAVRCVQFG 491
>gi|401882114|gb|EJT46387.1| DNA polymerase delta, small subunit [Trichosporon asahii var.
asahii CBS 2479]
Length = 490
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 167/472 (35%), Positives = 254/472 (53%), Gaps = 57/472 (12%)
Query: 10 LQRKQATYIFLDE---PFEI--QKETYRGQQYSQIYFARLHLMRALLYSLVPN-W----- 58
L+R Y L E PF I K +++ QY+ +YF RL +R ++ W
Sbjct: 13 LRRPSVPYSSLPELSKPFLIDPSKRSFK-HQYANVYFVRLVELRPIVEEHAKRLWAERHC 71
Query: 59 -----------KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVK 107
KP L + +L+L G+ C I+GT+Y M LKP++L++ ++ P
Sbjct: 72 GYIFRNYLTLVKPRL-LPRILDLNRGQPCYIVGTVYMDMPLKPNVLEDMARSNWIAPPAP 130
Query: 108 PHNFMHPDDHLVLEDESGRVKLGGAELLP------SAYVTGIVVALHGKETSAGEFLVLD 161
F D + LEDESGRV+L G + +VTG+++ + G E S+G+F V++
Sbjct: 131 RPKFYSSQDAVHLEDESGRVRLVGDVIRKERDREGGGFVTGVIMGVLGFENSSGDFEVME 190
Query: 162 VLDAGLAPQKELPLNSG----------------EDK-YVVLVSGLNVGSGTSNP-LQFQL 203
+ AG+ P P +SG E K +V LVSGL+VG+ TS P L+ +L
Sbjct: 191 LCFAGM-PDVYHPSSSGTANGKGKARESMDVDDESKTWVALVSGLSVGNETSAPDLKSEL 249
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
LV+ + G G ++Q + I V+ AGN++ P + GQ+ K ++ L P K L
Sbjct: 250 LVEWLMGENGGAQDQLEGSRIARVIFAGNTLAAP---IKGQD-DRKIKADLNHPTKNLAH 305
Query: 264 LLTQI-AAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVR 322
+L+ + A+ +P++++PGP+DP LPQQP+ + +F G TNP E+ +
Sbjct: 306 MLSDLLASSLPMNLVPGPSDPGGAVLPQQPMPKVMF-GGKKMEGLECNTNPTWLEIGDRS 364
Query: 323 FLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPH 382
FL + GQTIDD+ KY +L +RTL WRH+APTAP+TL YPF D DPF++ P+
Sbjct: 365 FLCSGGQTIDDVFKYLPGKSRLPMAKRTLEWRHIAPTAPDTLWIYPFPDNDPFIIRERPN 424
Query: 383 VYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
VY GNQ +FET L+ D+ R+V +P F+ TG +V L+ LE T++F
Sbjct: 425 VYVVGNQPEFETALVGDEDK--TRIVMLPSFAATGTVALVCLETLEVKTVAF 474
>gi|259481579|tpe|CBF75230.1| TPA: DNA polymerase III (delta) subunit (Eurofung) [Aspergillus
nidulans FGSC A4]
Length = 538
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 164/492 (33%), Positives = 258/492 (52%), Gaps = 84/492 (17%)
Query: 27 QKETYRGQQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVI 78
Q+ Y+ QQY +YF RL ++ + ++ V W+ + VL++ +G C +
Sbjct: 41 QERQYQ-QQYGDMYFLRLAKLKPAVEAVAVEAWEGFSIAGEHARRVERVLDVRQGELCWV 99
Query: 79 IGTLYKHMKLKPSILDEYSKERSTT---PLVKPHNFMHPD-DHLVLEDESGRVKLGGAEL 134
GT+Y M LKP+ILD+ +K+ T+ P + HP+ ++LEDESGR++L G++L
Sbjct: 100 AGTIYMEMPLKPNILDDLAKDNFTSAPPPRRTYQDPAHPELTEIMLEDESGRLRLTGSKL 159
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ--------KELPLNSGEDKYVVLV 186
TG+++A+ G E + G+F +D+ LA Q + P + + K + +V
Sbjct: 160 QSVQLATGVIIAVLGTENANGDFEAIDIKVPDLARQPRRWERDEAKAPKEAKKGK-IAMV 218
Query: 187 SGLNVGSGTSNPLQFQLLVDHITGHLGDEK-EQGI---AAEIVHVVIAGNSIE------- 235
SGL + +S+ L +LL D++ G+ G K E+G A+ I ++IAGNS+
Sbjct: 219 SGLGITGTSSDTLALELLTDYLLGYTGSSKGEEGSPPDASRITRLIIAGNSLGASTIEAA 278
Query: 236 -----IPRGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
+P + Q D S PI +LD L ++ +P+ +MPG +DPANF+LP
Sbjct: 279 PATDGVPAKKIAHQKKYGYDASAYNASPITQLDSFLAELLPSIPITLMPGESDPANFALP 338
Query: 290 QQPLNRCLFPGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336
QQP++R +FP S Y F S TNP +++ RF G+SGQ +DD+ +
Sbjct: 339 QQPIHRAMFPRSRAYCSAPPIGEDKVEPGWFDSVTNPWEGDVEGWRFWGSSGQNVDDVLR 398
Query: 337 YSEANDQ-------------LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHV 383
Y + D+ + ME LRWR PTAP+TL YPF DPF++ESCPH+
Sbjct: 399 YLDFADEDGNVDMNGDTEARIRVMEAMLRWRCGVPTAPDTLWSYPFQTHDPFVMESCPHL 458
Query: 384 YFAGNQQKFETRLLKGS--------DRQL-----------VRLVCIPKFSETGVAVVVNL 424
+FAGNQ +F+T +++G D ++ VRL+ +PKF ETG V+V+
Sbjct: 459 FFAGNQPQFKTAVIEGDLPLRPDGEDTEMGGTAQNAAVPTVRLISLPKFRETGELVLVDT 518
Query: 425 KNLECHTLSFGT 436
+ L + FGT
Sbjct: 519 ETLGVEVVRFGT 530
>gi|409082633|gb|EKM82991.1| hypothetical protein AGABI1DRAFT_118391 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 520
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 169/470 (35%), Positives = 256/470 (54%), Gaps = 47/470 (10%)
Query: 9 RLQRKQATYIFLDEP---FEIQK--ETYRGQQYSQIYFARLHLMR-ALLYSLVPNWK--- 59
R R T + L E F I+K ++Y+ QYS IYF RL +R ++ + + WK
Sbjct: 11 RATRAATTVLPLPETTQNFLIRKGNKSYK-HQYSNIYFLRLRSLRQSVEEAALAKWKNLS 69
Query: 60 -PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHL 118
+ + VL++ + C IIGT+Y HM LKP+++ + +++ S P P F +D +
Sbjct: 70 GKPVMVPRVLDVINSQLCYIIGTVYLHMPLKPNVMIDIARDHSIPPPPPPTKFYSDNDSI 129
Query: 119 VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK------E 172
+LEDESGR++L G L VTGI++ + G ET+ G+F V+D+ LAPQ E
Sbjct: 130 MLEDESGRIRLVGEVLKGKNIVTGIIIGVLGAETAEGDFKVVDICFPELAPQAFGEIDLE 189
Query: 173 LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
+++ D+++ VSGL VG TS Q Q+L +++TG G E +Q AA+I ++IAGN
Sbjct: 190 DAMDTDGDEWIGFVSGLEVGKTTSIDAQLQMLTEYLTGEEGGEDDQLSAAKISRLIIAGN 249
Query: 233 S---------IEIPRGLLNGQNLASKDQ--SRLF--EPIKELDILLTQIAAGVPLDIMPG 279
S IE P + A K + + F PI +L L IA +P+ I+PG
Sbjct: 250 SLAPGALAERIETPS---YAERKARKKELDPKTFTPNPIYDLSAYLLDIARVMPIHILPG 306
Query: 280 PNDPANFSLPQQPLNRCLFPGSAT-YNTFRSCTNPHCFELDNV-------RFLGTSGQTI 331
P DP +PQQP R +F ++T ++TF +NP + + L SGQ +
Sbjct: 307 PGDPTGTMMPQQPFPRGIFGDASTRFSTFHLESNPAYINIASTSQPSCKRHILVNSGQPL 366
Query: 332 DDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ 389
DD+ KY + +L +E TLRWRH+APTAP+TL C+P+ DPF++ PH+Y G Q
Sbjct: 367 DDMFKYLPTPPVTRLSVLESTLRWRHMAPTAPDTLWCHPYFVADPFVIRETPHLYVVGGQ 426
Query: 390 QKFETRLLKGSD----RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
+F T L+ R R+V +P F+++G+ VVVN K LE ++F
Sbjct: 427 PEFGTNLITDETQIGRRIKSRIVLVPNFAKSGMLVVVNAKTLEVRCVNFA 476
>gi|170094006|ref|XP_001878224.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646678|gb|EDR10923.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 544
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 159/490 (32%), Positives = 255/490 (52%), Gaps = 85/490 (17%)
Query: 28 KETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLP-----------------------I 64
K++Y+ QYS IYF RL L+R ++ HL I
Sbjct: 35 KKSYK-HQYSNIYFVRLRLLREVVEKRAKKLWEHLNGMVHFSDMLTLANASLSKGNPVLI 93
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDES 124
VLE+ + C ++GT+Y M LKP+++++ +++ S P P F PDD+++LEDES
Sbjct: 94 PRVLEVTKSHLCYVVGTVYMDMPLKPNVMEDIARDNSIPPPPPPLTFYSPDDNVMLEDES 153
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ-----------KEL 173
GR++L G L + VTG+++ G ET G+F V+D+ A +AP+ E+
Sbjct: 154 GRIRLVGDRLKDARLVTGVIIGALGMETPNGDFEVVDICCAEMAPRPSASEGTNSAGDEM 213
Query: 174 PLNS-----GEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
++ D+++ +VSGL++GS + + Q Q+LV+++TG +G ++Q +A+I ++
Sbjct: 214 DVDDQTTSPASDEWIGVVSGLDIGSLSPSDAQIQMLVEYLTGEVGGVEQQISSAQISRLI 273
Query: 229 IAGNSI------------EIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDI 276
IAG+S+ E + G ++AS + PI L L +A +P+ I
Sbjct: 274 IAGDSLATIAPSGRETVYEDKKARRYGNDVASFSR----HPILNLSAHLLDLALVMPIHI 329
Query: 277 MPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVR-------------- 322
+PG +DP+ +PQQPL R +F ++ TF TNP ++
Sbjct: 330 LPGESDPSGVIMPQQPLPRAMFGEASKLTTFSCETNPTYLKIATSEESPNSSSAAPNRPI 389
Query: 323 ----FLGTSGQTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
L SGQ ++D+ KY S + +L +E T+RWRH+APTAP+TL C+P+ DPFL
Sbjct: 390 VERTLLINSGQPLNDIFKYLPSPPHTRLSILESTIRWRHMAPTAPDTLWCHPYFAEDPFL 449
Query: 377 VESCPHVYFAGNQQKFETRLL---------KGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
+ P +Y G Q+ F T+LL KGS R R+V IP F+ TG V+VNL++L
Sbjct: 450 ISETPDIYIVGGQKAFGTKLLLDNSKEAEEKGSSRPRCRIVMIPSFARTGTLVLVNLRSL 509
Query: 428 ECHTLSFGTQ 437
+ ++F Q
Sbjct: 510 DVRRVNFAVQ 519
>gi|156537658|ref|XP_001607856.1| PREDICTED: DNA polymerase delta small subunit-like [Nasonia
vitripennis]
Length = 449
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 167/450 (37%), Positives = 251/450 (55%), Gaps = 27/450 (6%)
Query: 9 RLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPICTV 67
+++RK A + F+I+ ++ +Q+S IY ARL ++A +L W H + V
Sbjct: 3 QIERKSAEFEDFGR-FQIESRSF-SRQFSGIYKARLSSLKAKVLKRARAKWSKHKVLHIV 60
Query: 68 -LELEEGREC--VIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDES 124
L +E E +IIGTLYKH +LKPSIL E ++E P N+ D L LED+
Sbjct: 61 DLTKDEYEEVPSIIIGTLYKHQELKPSILKEIAEELQAVPQPSRLNYCSTKDSLYLEDDV 120
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAG--LAPQKELPLNSGED-- 180
RVKL G L A VTG++ A+ G +T G F V DV G L + P + +D
Sbjct: 121 SRVKLVG-NLTAEALVTGLICAVCGHQTKDGSFWVEDVCYPGPYLRSLNQTPSSCAKDHD 179
Query: 181 KYVVLVSGLN-VGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE-IPR 238
K+++ +SGL+ V S P+ LL++ ITG LG+E Q AA+IV V+IAGNS+ +P+
Sbjct: 180 KFILFLSGLDFVNEADSIPMD--LLIEWITGSLGEEFVQEEAAKIVRVIIAGNSVRGLPK 237
Query: 239 GLLNGQNLASKDQSRLFE-----PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
+K + L + LD +++IA + +MPG DP+ SLPQ L
Sbjct: 238 TFTRKGYFENKRKEALVNLEMHHSVHRLDKFISKIAGSCSVTLMPGEFDPSCHSLPQHSL 297
Query: 294 NRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN-DQLEFMERTLR 352
+ + P S+ TNP ++ + G+SGQ I+D+ K S + L+++E+TL
Sbjct: 298 HPNILPISSRGKNLYGTTNPWIGKIGSRIVGGSSGQPIEDIMKVSNVDLSPLDWLEKTLE 357
Query: 353 WRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR------QLVR 406
W+H APTAP+TL YPF DP ++ P++YF GN +++ET+L++ DR Q VR
Sbjct: 358 WQHFAPTAPDTLAEYPFDQADPLVMNEIPNIYFVGNMERYETKLVQSIDRNDDSEGQPVR 417
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
L+CIPKFS + AV+V+L +L+ +SFG
Sbjct: 418 LICIPKFSTSQTAVLVDLDSLDTKPVSFGA 447
>gi|406700838|gb|EKD04000.1| DNA polymerase delta, small subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 617
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 161/471 (34%), Positives = 252/471 (53%), Gaps = 55/471 (11%)
Query: 10 LQRKQATYIFLDE---PFEI--QKETYRGQQYSQIYFARLHLMRALLYSLVPN-W----- 58
L+R Y L E PF I K +++ QY+ +YF RL +R ++ W
Sbjct: 140 LRRPSVPYSSLPELSKPFLIDPSKRSFK-HQYANVYFVRLVELRPIVEEHAKRLWAERHC 198
Query: 59 -----------KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVK 107
KP L + +L+L G+ C I+GT+Y M LKP++L++ ++ P
Sbjct: 199 GYIFRNYLTLVKPRL-LPRILDLNRGQPCYIVGTVYMDMPLKPNVLEDMARSNWIAPPAP 257
Query: 108 PHNFMHPDDHLVLEDESGRVKLGGAELLP------SAYVTGIVVALHGKETSAGEFLVLD 161
F D + LEDESGRV+L G + +VTG+++ + G E S+G+F V++
Sbjct: 258 RPKFYSSQDAVHLEDESGRVRLVGDVIRKERDREGGGFVTGVIMGVLGFENSSGDFEVME 317
Query: 162 VLDAGL----------------APQKELPLNSGEDKYVVLVSGLNVGSGTSNP-LQFQLL 204
+ AG+ ++ + ++ +V LVSGL+VG+ TS P L+ +LL
Sbjct: 318 LCFAGMPDVYHPSSLGTANGKGKARESMDVDDESKTWVALVSGLSVGNETSAPDLKSELL 377
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
V+ + G G ++Q + I V+ AGN++ P + GQ+ K ++ L P K L +
Sbjct: 378 VEWLMGENGGAQDQLEGSRIARVIFAGNTLAAP---IKGQD-DRKIKADLNHPTKNLAHM 433
Query: 265 LTQI-AAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L+ + A+ +P++++PGP+DP LPQQP+ + +F G TNP E+ + F
Sbjct: 434 LSDLLASSLPMNLVPGPSDPCGAVLPQQPMPKVMF-GGKKMEGLECNTNPTWLEIGDRSF 492
Query: 324 LGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHV 383
L + GQTIDD+ KY +L +RTL WRH+APTAP+TL YPF D DPF++ P+V
Sbjct: 493 LCSGGQTIDDVFKYLPGKSRLPMAKRTLEWRHIAPTAPDTLWIYPFPDNDPFIIRERPNV 552
Query: 384 YFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
Y GNQ +FET L+ D+ R+V +P F+ TG +V L+ LE T++F
Sbjct: 553 YVVGNQPEFETALVGDEDK--TRIVMLPSFAATGTVALVCLETLEVKTVAF 601
>gi|169602154|ref|XP_001794499.1| hypothetical protein SNOG_03956 [Phaeosphaeria nodorum SN15]
gi|111068041|gb|EAT89161.1| hypothetical protein SNOG_03956 [Phaeosphaeria nodorum SN15]
Length = 499
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 245/460 (53%), Gaps = 50/460 (10%)
Query: 24 FEIQKETYR--GQQYSQIYFARLHLMRALLYSLVPN-W--------KPHLPICTVLELEE 72
F++ K R QQ++ +YF RL ++A + + + W K + VL++ +
Sbjct: 36 FDLPKGADRHYAQQFADMYFLRLAHLKAQVKARAQDAWHDFELGGAKAQF-VERVLDVRQ 94
Query: 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD--HLVLEDESGRVKLG 130
C ++GT++ + +KP++LD+ +KE K ++ P ++LEDESGR+++
Sbjct: 95 SELCWVVGTVFMDLAMKPNVLDDITKEHWIAAPPKRTTYLEPAKPADMMLEDESGRLRVT 154
Query: 131 GAELLPSAYVTGIVVALHGKETSAGEFLVL--------------DVLDAGLAPQKELPLN 176
G + L + +VTG V+A G E + G F V+ + DA LA KE
Sbjct: 155 G-DPLRAHFVTGCVLAALGTEQADGTFQVIATQFVDLPRQPQRWERQDATLAHTKEPTPK 213
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
+ + +VSGL++ L QLLV+ +TG +Q AA I ++IAG+S+
Sbjct: 214 REKPGKIAIVSGLDLTGDDPENLSLQLLVEFLTGQASGPLDQDKAANITRLIIAGDSLRR 273
Query: 237 PRGLLNGQNLASKD--------QSRLFEPIK--ELDILLTQIAAGVPLDIMPGPNDPANF 286
+L+ A+K + ++PI LDI LTQI +P+ ++PG +DP+N
Sbjct: 274 ASPILSRDEFAAKKAASKHYGYDASTYDPIPTGRLDIFLTQILPSIPITLLPGASDPSNV 333
Query: 287 SLPQQPLNRCLFPGSATY-----------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQ 335
+LPQQPL+ LFP S Y + TNP +++ R LGTSGQ + DL
Sbjct: 334 ALPQQPLHPALFPRSRHYAEPPASGLDTLHGLDMVTNPWEGDVEGYRILGTSGQNVADLF 393
Query: 336 KYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
KY E ++ ME LRWR +APTAP+TL CYPF D DPFLV+ CPH+YF G Q+KF R
Sbjct: 394 KYVEKVKTVQIMEMMLRWRCIAPTAPDTLWCYPFQDDDPFLVKECPHLYFVGCQKKFGKR 453
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
+++G Q V +V +P+FS+ V+V+L + E + G
Sbjct: 454 IIEGPAGQKVLVVSVPRFSKRKQVVLVDLDSWEVEVVKLG 493
>gi|405118300|gb|AFR93074.1| DNA polymerase Delta [Cryptococcus neoformans var. grubii H99]
Length = 508
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 242/465 (52%), Gaps = 56/465 (12%)
Query: 20 LDEPFEIQ--KETYRGQQYSQIYFARLHLMRALLY-SLVPNWK------PHLPICTVLEL 70
L +PF I +Y+ QY+ IYF RL R + WK P LP +L L
Sbjct: 26 LSKPFTIDPASRSYK-HQYANIYFVRLVEQRPTVEEKATEKWKDVKGHPPLLP--RILNL 82
Query: 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLG 130
+ C I+GT+Y M LKP+IL++ +++ + F D + LEDESGRV+L
Sbjct: 83 TRSQLCYIVGTIYMEMPLKPNILEDMARDHWLAAPIPRTKFFSAQDSIHLEDESGRVRLI 142
Query: 131 G------AELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG------ 178
G + VTG+++A G ET +G+F V+D+ AG+ P K L LN G
Sbjct: 143 GDVIQRERDREGGGLVTGVIMAALGMETPSGDFEVIDICFAGM-PDK-LVLNPGPPNAKG 200
Query: 179 -----------------------EDKYVVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGD 214
E +V +VSGL++G+ + L+ ++LV+ + G +G
Sbjct: 201 KGKVENDEDIDMREDAKIELPESEKTWVAMVSGLSIGTQEAPTDLKAEMLVEWLMGEIGG 260
Query: 215 EKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR--LF--EPIKELDILLTQ-IA 269
+Q I ++IAGNS+ +P + + + + + LF P K L L ++
Sbjct: 261 PSDQLGGGRIARLIIAGNSLTLPVKGEDDKKIKRFNSTSKPLFPNHPTKTLATLFADLLS 320
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQ 329
+ +P+ ++PGP+DPA +LPQQPL + LF G A TNP E+ FL T GQ
Sbjct: 321 SSLPIHLIPGPSDPAGATLPQQPLPKILFGGKAKTEGLECETNPTWMEVGGRSFLTTGGQ 380
Query: 330 TIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ 389
IDD+ KY N +L +RTL WRH+APTAP+TL YPF D DPF+++ P VY GNQ
Sbjct: 381 AIDDIFKYVPGNSRLAMTQRTLEWRHMAPTAPDTLWIYPFPDADPFILKYRPDVYIVGNQ 440
Query: 390 QKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+FET ++ G + RL+ + F++TGV V L+ LEC TL F
Sbjct: 441 PEFETTII-GDEDAPTRLILLSSFAKTGVLAFVCLETLECRTLEF 484
>gi|238882848|gb|EEQ46486.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 474
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 223/391 (57%), Gaps = 25/391 (6%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C +IGT++ K K IL++ K ++P +++ D+ ++LEDES
Sbjct: 84 ILDIASGKLCWVIGTVFCDAKYKLDILNDVEKGTDDVLPLEPVTYVNEDEQPIVMLEDES 143
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
GR L L + VTG +VA+ G E AG F ++D+ APQK LPL + +
Sbjct: 144 GRAILNNDNFLAKNLLVTGCIVAVLGIEIQAGIFEIMDIAYPDCAPQKPLPLGENKRGKI 203
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP------ 237
LVSGLN+G L+ +LL ++ G LG+ +++ + I ++IAG+SI +P
Sbjct: 204 ALVSGLNIGDEGHYDLKLELLKQYLLGELGNAEDKLDGSLISQLIIAGDSI-MPIQNLRA 262
Query: 238 ----RGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
+ + N SK+ S+ E K+LD LT I +P+ +MPG NDPA LPQQP
Sbjct: 263 EMDLKNFVTTNNYGSKNISKYNVESFKKLDEFLTDILVSLPVAVMPGKNDPAEICLPQQP 322
Query: 293 LNRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----SEANDQL 344
L+R LF +++ N TNP + V+ LGTSGQ +DD+QKY +
Sbjct: 323 LHRSLFKNNSSLLDGNRLTRLTNPQWIDAQTVKILGTSGQNVDDIQKYIVPKKDHQFTSI 382
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV-ESCPHVYFAGNQQKFETRLLKGSDRQ 403
E ME ++W++ PTAP+TL CYP+ + DPF+ + PHVYF GNQQ+F+++LL+ D
Sbjct: 383 EIMENNIKWQNFVPTAPDTLYCYPYENYDPFIFSDDLPHVYFVGNQQQFDSKLLE-HDGV 441
Query: 404 LVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
VRL+ IPKF E+G V+++L LE ++
Sbjct: 442 NVRLISIPKFKESGQFVLLDLDTLETEVVTI 472
>gi|355712614|gb|AES04407.1| polymerase , delta 2, regulatory subunit 50kDa [Mustela putorius
furo]
Length = 382
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/355 (41%), Positives = 214/355 (60%), Gaps = 7/355 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEG 73
++Y +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 30 SSYTNSSQPFRLGERSF-SRQYAHIYATRLLQMRPFLVSRAKQRWGGGVQVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R++L G +
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIRLEG-D 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G +G+F+V D A LAPQK P + +++ G
Sbjct: 148 VDASRLVTGTVLAVLGSARDSGKFVVEDHCFAELAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E ++ LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVRMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL 364
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TL
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTL 382
>gi|171692853|ref|XP_001911351.1| hypothetical protein [Podospora anserina S mat+]
gi|170946375|emb|CAP73176.1| unnamed protein product [Podospora anserina S mat+]
Length = 500
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 251/475 (52%), Gaps = 48/475 (10%)
Query: 2 EIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKP 60
+ D + L+R + Y L+ F + K QQ++ IYF RL ++ + + W
Sbjct: 18 KTDSKNTDLERAPSNYKSLNT-FALPKARQYQQQFADIYFLRLTKIKPAVEQIAHEAWDD 76
Query: 61 HL-------PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMH 113
+ + VL++ +G C + GT+Y M LKPSIL++ SK+R + ++
Sbjct: 77 TVLGGENAKKVERVLDVRQGELCWVAGTVYMDMPLKPSILEDVSKDRWISAPTSVGHYYS 136
Query: 114 PD--DHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK 171
D D ++LED+SGR++L G L VTG ++A+ G E + GEF V+D+ A L PQ
Sbjct: 137 EDGKDQVMLEDDSGRIRLVGEPLKNYFLVTGCIIAVMGTENANGEFEVIDLKFADLPPQP 196
Query: 172 ELPLNS-----GED----------KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGH-LGD 214
S ED K + ++SGL G T+ + ++L + + L
Sbjct: 197 PRWALSDKKPKSEDVSMVDVGSPSKKIAIISGLEFSGFSTAYSAELKVLREFLAAQALDP 256
Query: 215 EKEQGIAAEIVHVVIAGNSI-EIPRGLLNGQNLASKDQSRLF---------EPIKELDIL 264
E + ++I ++IAGNSI E + N +K ++ + P + LD
Sbjct: 257 ETQSNEQSKISRLIIAGNSIAEASSSDPHSNNPNTKTHAKKYGYDASAYNPAPSQLLDSF 316
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT----------FRSCTNPH 314
L ++ +P+ ++PG NDPAN S PQQP++ +FP S Y + TNP
Sbjct: 317 LNELLPSLPITLLPGANDPANVSYPQQPIHSAMFPESRYYGPTPTHPDQTGWLDATTNPF 376
Query: 315 CFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDP 374
E++ R LGTSGQ +DD+ KY E D+L ME RWR APTAP+TL YPF D +P
Sbjct: 377 ESEIEGWRVLGTSGQNLDDICKYMEDPDRLGLMEAMCRWRCSAPTAPDTLWSYPFQDDEP 436
Query: 375 FLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
F+++ CPH+YF G+Q KF +++++G D Q+VRLV +PKFSET V+V+ + L+
Sbjct: 437 FVMKECPHLYFVGSQPKFGSKVIEGPDGQIVRLVLVPKFSETKEVVLVDTETLDV 491
>gi|425765731|gb|EKV04389.1| DNA polymerase delta subunit 2, putative [Penicillium digitatum
Pd1]
gi|425777618|gb|EKV15778.1| DNA polymerase delta subunit 2, putative [Penicillium digitatum
PHI26]
Length = 544
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 245/488 (50%), Gaps = 87/488 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ + + + L I VL++ +G C + GT+Y H
Sbjct: 49 QQYDDMYFLRLAKLKPTVEQVAMDAWDGLVIAGEKVRRVDRVLDVRQGELCWVAGTVYMH 108
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+IL++ SKE T+ + P D +++EDESGR++L G L + T
Sbjct: 109 LPLKPNILEDLSKENFTSAPPPRRTYTDPSDPSLTQIMMEDESGRLRLTGNFLQSTQLAT 168
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQ----------KELPLNSGEDKYVVLVSGLNV 191
G ++A G E + G+F V+D+ LAPQ E+ + E + VSGL +
Sbjct: 169 GAIIAALGTENANGDFEVIDIKLPDLAPQAQRWESNAPKSEVEIAGTEHGKIAFVSGLGI 228
Query: 192 GSGTSNPLQFQLLVDHITGHLG-----DEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246
+S+ L +LL D++ G+ G D ++I ++IAGNS+ + + ++
Sbjct: 229 TGTSSDTLGLELLTDYLLGYTGFSGNDDNSPSMGPSKISRLIIAGNSLGASV-IGDVASI 287
Query: 247 ASKDQSRLF---------------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+S D + PI +LD L +I +P+ +MPG DPANFSLPQQ
Sbjct: 288 SSGDAAAKKAQPKKYGYDASAYNAAPITQLDNFLAEILPSIPITLMPGEKDPANFSLPQQ 347
Query: 292 PLNRCLFPGSATYNT-------------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKY- 337
++R +FP + Y+ F S TNP +++ R G SGQ +DD+ +Y
Sbjct: 348 GIHRTMFPQARAYSAPPVRGDETPEVGWFDSVTNPWDGDVEGWRLWGCSGQNVDDVLRYI 407
Query: 338 ------------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYF 385
+++D++ ME LRWR PTAP+TL YP+ DPF++ESCPH++F
Sbjct: 408 SIEDGDSTPDKEKDSDDRMRIMEAMLRWRCGVPTAPDTLWSYPYQSDDPFVIESCPHIFF 467
Query: 386 AGNQQKFETRLLK------------------GSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
AGNQ +F+T ++ GSD VRL+ +PKFSETG ++V+ + L
Sbjct: 468 AGNQPQFKTATIEGDTPLRLDGDTEMVGAADGSDAARVRLLALPKFSETGELILVDTETL 527
Query: 428 ECHTLSFG 435
E + FG
Sbjct: 528 EVEVVRFG 535
>gi|68467741|ref|XP_722029.1| hypothetical protein CaO19.11442 [Candida albicans SC5314]
gi|68468060|ref|XP_721869.1| hypothetical protein CaO19.3960 [Candida albicans SC5314]
gi|46443811|gb|EAL03090.1| hypothetical protein CaO19.3960 [Candida albicans SC5314]
gi|46443976|gb|EAL03254.1| hypothetical protein CaO19.11442 [Candida albicans SC5314]
Length = 474
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 222/391 (56%), Gaps = 25/391 (6%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C +IGT++ K K IL++ K ++P +++ D+ ++LEDES
Sbjct: 84 ILDIASGKLCWVIGTVFCDAKYKLDILNDVEKGTDDVLPLEPVTYVNEDEQPIVMLEDES 143
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
GR L L + VTG +VA+ G E AG F ++D+ APQK LPL + +
Sbjct: 144 GRAILNNDNFLAKNLLVTGCIVAVLGIEIQAGIFEIMDIAYPDCAPQKPLPLGENKRGKI 203
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP------ 237
LVSGLN+G L+ +LL ++ G LG+ +++ + I ++IAG+SI +P
Sbjct: 204 ALVSGLNIGDEGHYDLKLELLKQYLLGELGNAEDKLDGSLISQLIIAGDSI-MPIQNLRA 262
Query: 238 ----RGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
+ + N SK+ S+ E K+LD LT I +P+ +MPG NDPA LPQQP
Sbjct: 263 EMDLKNFVTTNNYGSKNISKYNVESFKKLDEFLTDILVSLPVAVMPGKNDPAEICLPQQP 322
Query: 293 LNRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----SEANDQL 344
L+R LF +++ N TNP + V+ LGTSGQ +DD+QKY +
Sbjct: 323 LHRSLFKNNSSLLDGNRLTRLTNPQWIDAQTVKILGTSGQNVDDIQKYIVPKKDHQFTSI 382
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV-ESCPHVYFAGNQQKFETRLLKGSDRQ 403
E ME ++W++ PTAP+TL CYP+ + DPF+ + PHVYF GNQQ+F+++L + D
Sbjct: 383 EIMENNIKWQNFVPTAPDTLYCYPYENYDPFIFSDDLPHVYFVGNQQQFDSKLFE-HDGV 441
Query: 404 LVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
VRL+ IPKF E+G V+++L LE ++
Sbjct: 442 NVRLISIPKFKESGQFVLLDLDTLETEVVTI 472
>gi|336385426|gb|EGO26573.1| hypothetical protein SERLADRAFT_414551 [Serpula lacrymans var.
lacrymans S7.9]
Length = 515
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 164/474 (34%), Positives = 248/474 (52%), Gaps = 62/474 (13%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWK-----PHLPICTVLELEEGRECV 77
+ + ++Y+ Q+S IYF RL ++R A+ WK P + VL++ + + C
Sbjct: 30 IDAKNKSYK-HQFSNIYFTRLTMLRKAVEQRAEKRWKNVAGKPTY-VRRVLDVVKSQLCW 87
Query: 78 IIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPS 137
I+GT+Y M LKP++L + ++ S P P F D ++LEDESGR+ L G ++ +
Sbjct: 88 IVGTVYIDMPLKPNVLQDIGRDHSIAPPPPPVKFNSDKDVVMLEDESGRITLVGEKVKVA 147
Query: 138 AYVTGIVVALHGKETSAGEFLVLDVLDAGLAP------QKELPLNSGE--------DKYV 183
VTG++VA+ G ET GEF +DV AGLAP + E +N+ E D+Y+
Sbjct: 148 CLVTGVIVAVLGVETLNGEFEAIDVSIAGLAPFCENGGEVEDVMNTEEPDSLPPQIDEYI 207
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP------ 237
+VSGL +GS + Q Q+LV+ + G G +++ IAA++ +VIAGNS+ IP
Sbjct: 208 GIVSGLQIGSPSPIDAQIQMLVEFLVGEAGGPEDRKIAAQVSCLVIAGNSLAIPISKETD 267
Query: 238 --RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
AS + P L L +++ +P+ I+PGP+DPA LPQQP R
Sbjct: 268 KDDKKDRRFKKASSHATFSPHPAAMLAAHLLDLSSVLPVHILPGPDDPAGAILPQQPFPR 327
Query: 296 CLFPGSATYNTFRSCTNPHCF--ELDNVR-----------------------FLGTSGQT 330
+F +++ TF TNP E +N + L TSGQ
Sbjct: 328 AMFGKASSSETFYCETNPVWLNIECENTKHLPPSKRTSTSRSKSSSLHLKRNILITSGQP 387
Query: 331 IDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+ D+ KY S + L TL W+H+APTAP+TL C+PF DRDPF++ P +Y GN
Sbjct: 388 VLDMYKYLSSPPSTCLSIAMSTLMWQHIAPTAPDTLWCHPFRDRDPFVLHQTPDIYVVGN 447
Query: 389 QQKFETRLLKGSD-----RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
+F T L++ D Q R+V +P F+ETG+ V+VNL+ L + FG +
Sbjct: 448 APEFATALVRSGDEDAKKEQRCRVVLVPSFAETGLLVLVNLRTLNVRCVGFGLE 501
>gi|350406313|ref|XP_003487727.1| PREDICTED: DNA polymerase delta small subunit-like [Bombus
impatiens]
Length = 445
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 237/442 (53%), Gaps = 25/442 (5%)
Query: 13 KQATYIFLD-EPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELE 71
++ + IF D + F I ++ + QQY IY ARL ++ L H I T+ +L
Sbjct: 10 RRKSCIFEDFKKFNISEQRFE-QQYCSIYKARLKALKDYLLQKAKIKWGHNKIVTLEQLS 68
Query: 72 EGRE---CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E E C+IIGTLYKH +LKPS+L E S E N+ D L LEDE+ R+K
Sbjct: 69 ERNENDTCIIIGTLYKHQELKPSLLRELSTELQLQTQPARANYASFKDILYLEDETLRIK 128
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL---PLNSGEDKYVVL 185
L + VTGIV A+ G E GE V+D G P+ + PL + +++
Sbjct: 129 LVDNHINIQDVVTGIVCAVLGHELKDGELSVIDWCLPGCCPKLSIFDRPLET--QGKILI 186
Query: 186 VSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
+SGL++ + + L LL + ITG +G E+ A IV ++IAGNS+ RG + N
Sbjct: 187 ISGLDLANNLQS-LSTDLLFEWITGMIGCEEVHKDVASIVCIIIAGNSV---RGSVETHN 242
Query: 246 L-----ASKDQSRLFEPIK----ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
+ + +F+ +LD L I P+ +MPG DP +LPQQPL+ C
Sbjct: 243 YKNYFETNAHDAAIFKETANITHKLDNFLHPIIQCCPIILMPGEFDPTCHTLPQQPLHPC 302
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWR 354
+ P + +F TNP +++ G+SGQ I D+ K + D L ++ERTL WR
Sbjct: 303 ILPQCFRFKSFYGVTNPWIGSINSRIVAGSSGQPIIDIMKVAGLVDISPLMWLERTLLWR 362
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS 414
H APTAP+T+ YP + DPF++ CP +YF GN +K++T+L + Q +RL+CIP FS
Sbjct: 363 HYAPTAPDTIPAYPSSKIDPFIITECPDIYFVGNMEKYDTKLFTADEGQTIRLICIPTFS 422
Query: 415 ETGVAVVVNLKNLECHTLSFGT 436
+T V+VNL++LE +SF
Sbjct: 423 KTQTGVLVNLQDLETWPISFAV 444
>gi|50549919|ref|XP_502431.1| YALI0D05093p [Yarrowia lipolytica]
gi|49648299|emb|CAG80619.1| YALI0D05093p [Yarrowia lipolytica CLIB122]
Length = 469
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 161/450 (35%), Positives = 241/450 (53%), Gaps = 50/450 (11%)
Query: 26 IQKETYRGQQYSQIYFARLH-LMRALLYSLVPNWK----PHLPICTVLELEEGRECVIIG 80
I K Y +QY+ IY+ RLH LM +L + W +L C L++ G ++G
Sbjct: 23 ITKRNYN-RQYAPIYYMRLHQLMSQVLDAATSKWADKNVKYLNKC--LDVLVGDTVFVVG 79
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHP-----------DDHLVLEDESGRVKL 129
TL+K MK KPS+L+E ++ P K ++ P D + LED SGR+ L
Sbjct: 80 TLFKDMKYKPSMLEEVTRSHWGAPPGKKPKYVDPQGDCEDGGHKDDSSIQLEDSSGRITL 139
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGED------ 180
G ++ +TG+V + G G F V+DV+ G Q PL N GED
Sbjct: 140 VGPKVQEFMLITGVVCGVLGTAGENGRFTVVDVVWGGFPEQIYRPLSGVNDGEDVEMADN 199
Query: 181 -----KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG-DEKEQGIAA--EIVHVVIAGN 232
Y+ L SGL +G ++ + LL +++ G L D + G+ I ++AGN
Sbjct: 200 DTPEDTYICLASGLYIGQKKTD-YKHVLLAEYLQGLLEEDGAKDGLVKPKNISRFIMAGN 258
Query: 233 --SIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
S+E R +++ L+ F+P+ +D + Q+ + +DIM G +DP N SLPQ
Sbjct: 259 NCSLESERPVID--TLSRTVDLDAFKPMARVDEYIAQLLPSISVDIMAGNDDPGNMSLPQ 316
Query: 291 QPLNRCLFPGSATYN--TFRSCTNPHCFELDN----VRFLGTSGQTIDDLQKY--SEAND 342
QPL+ +FP S + TF S +NP+ ++ ++ LGTSGQ + D+ KY +D
Sbjct: 317 QPLHLSMFPQSRKFKKATFGSVSNPYWWDFSTDEAPLKVLGTSGQNVSDIYKYLIEGRDD 376
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR 402
L+ ME TL WRHL PTAP+TL CYP+ D DPF+++ PH+YF GNQ +F+T ++K D
Sbjct: 377 ILDIMEHTLAWRHLCPTAPDTLTCYPYGDDDPFIIKETPHLYFCGNQDEFQTSVVK-HDG 435
Query: 403 QLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
VRLV +P+F ETG V+VN++ L+ L
Sbjct: 436 VSVRLVAVPRFDETGEVVLVNMRTLKAEVL 465
>gi|358060202|dbj|GAA93956.1| hypothetical protein E5Q_00602 [Mixia osmundae IAM 14324]
Length = 601
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 224/400 (56%), Gaps = 29/400 (7%)
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD-DHLVLED 122
+ VLE++ C++ GT+Y MKLKPS+LDE + + S P P ++ P D ++LED
Sbjct: 203 VNRVLEVQRDELCIVAGTIYVEMKLKPSVLDEIAIDYSI-PAAPPRKYVTPGVDEVLLED 261
Query: 123 ESGRVKL--GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL----- 175
SGR++L G E A VTGI+V++ G ET+ G+F VLD++ G PQ L L
Sbjct: 262 SSGRIRLIGTGIEQGKWALVTGIIVSVLGAETATGDFEVLDLIFPGPPPQLALGLPEASP 321
Query: 176 -----NSGED--------KYVVLVSGLNVG-SGTSNPLQFQLLVDHITGHLGDEKEQGIA 221
+S +D ++V + SGLN G S + LL + +TG LG+E+++ +A
Sbjct: 322 EAAMGDSIKDEQSSQAPGQWVAITSGLNFGDSSAPADAKRALLSEWLTGELGNEQDRLLA 381
Query: 222 AEIVHVVIAGNSIEI--PRGLLNGQNLASKD--QSRLF--EPIKELDILLTQIAAGVPLD 275
+ +++AGNS+ + P+ A K + +F +P ++D L + + +D
Sbjct: 382 TRVSRLIVAGNSMMVAPPKHEEPEARKAKKYGYDAAVFSPKPTADMDAFLEDLLPSIDVD 441
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQ 335
+MPG NDP+ ++PQQPL L P + + +NP + GTSGQ ++D+
Sbjct: 442 LMPGENDPSAPTMPQQPLIETLLPKAQSLGGCAMRSNPCWIDSGGAILFGTSGQNLNDIY 501
Query: 336 KYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
KY ++D+L T+ W H+APT+P+TL YPF++RDPF++ PH+YF GNQ FET
Sbjct: 502 KYISSDDRLTMAANTIEWSHIAPTSPDTLWTYPFSERDPFILPKTPHIYFVGNQPAFETC 561
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
L+ D Q +R+V +P FS+ ++N LEC ++ F
Sbjct: 562 LITTDDEQKIRVVLVPAFSDKAEIALINTATLECQSMRFA 601
>gi|336372615|gb|EGO00954.1| hypothetical protein SERLA73DRAFT_159552 [Serpula lacrymans var.
lacrymans S7.3]
Length = 543
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 163/464 (35%), Positives = 242/464 (52%), Gaps = 61/464 (13%)
Query: 34 QQYSQIYFARLHLMR-ALLYSLVPNWK-----PHLPICTVLELEEGRECVIIGTLYKHMK 87
Q+S IYF RL ++R A+ WK P + VL++ + + C I+GT+Y M
Sbjct: 67 HQFSNIYFTRLTMLRKAVEQRAEKRWKNVAGKPTY-VRRVLDVVKSQLCWIVGTVYIDMP 125
Query: 88 LKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVAL 147
LKP++L + ++ S P P F D ++LEDESGR+ L G ++ + VTG++VA+
Sbjct: 126 LKPNVLQDIGRDHSIAPPPPPVKFNSDKDVVMLEDESGRITLVGEKVKVACLVTGVIVAV 185
Query: 148 HGKETSAGEFLVLDVLDAGLAP------QKELPLNSGE--------DKYVVLVSGLNVGS 193
G ET GEF +DV AGLAP + E +N+ E D+Y+ +VSGL +GS
Sbjct: 186 LGVETLNGEFEAIDVSIAGLAPFCENGGEVEDVMNTEEPDSLPPQIDEYIGIVSGLQIGS 245
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP--------RGLLNGQN 245
+ Q Q+LV+ + G G +++ IAA++ +VIAGNS+ IP
Sbjct: 246 PSPIDAQIQMLVEFLVGEAGGPEDRKIAAQVSCLVIAGNSLAIPISKETDKDDKKDRRFK 305
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYN 305
AS + P L L +++ +P+ I+PGP+DPA LPQQP R +F +++
Sbjct: 306 KASSHATFSPHPAAMLAAHLLDLSSVLPVHILPGPDDPAGAILPQQPFPRAMFGKASSSE 365
Query: 306 TFRSCTNPHCF--ELDNVR-----------------------FLGTSGQTIDDLQKY--S 338
TF TNP E +N + L TSGQ + D+ KY S
Sbjct: 366 TFYCETNPVWLNIECENTKHLPPSKRTSTSRSKSSSLHLKRNILITSGQPVLDMYKYLSS 425
Query: 339 EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK 398
+ L TL W+H+APTAP+TL C+PF DRDPF++ P +Y GN +F T L++
Sbjct: 426 PPSTCLSIAMSTLMWQHIAPTAPDTLWCHPFRDRDPFVLHQTPDIYVVGNAPEFATALVR 485
Query: 399 GSD-----RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
D Q R+V +P F+ETG+ V+VNL+ L + FG +
Sbjct: 486 SGDEDAKKEQRCRVVLVPSFAETGLLVLVNLRTLNVRCVGFGLE 529
>gi|134058506|emb|CAL00715.1| unnamed protein product [Aspergillus niger]
Length = 516
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/468 (33%), Positives = 245/468 (52%), Gaps = 68/468 (14%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ + + V W+ + VL++ +G C + GT+Y
Sbjct: 44 QQYGDMYFLRLAKLKPAVEEIAVEAWEGFSIAGENARRVERVLDVRQGELCWVAGTIYMD 103
Query: 86 MKLKPSILDEYSKERST-TPLVKP--HNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVT 141
M LKP+ILD+ +KE T P +P + HP+ ++LEDESGR++L G+ L + T
Sbjct: 104 MPLKPNILDDLTKENYTLAPPPRPTYQDPAHPELTQIMLEDESGRLRLTGSMLRNTQLCT 163
Query: 142 GIVVALHGKETSAGEFLVLD--VLDAGLAPQK------ELPLNSGEDKYVVLVSGLNVGS 193
G ++A+ G E + G+F V+D V D P++ + P + + K + VSGL +
Sbjct: 164 GAIIAVLGTENANGDFEVIDTKVPDLPQQPRRWGSDTLDAPTGAMKGK-IAFVSGLGITG 222
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGI--AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251
+S+ L +LL D++ G+ G E + A+ I ++IAGNS+ + N S +
Sbjct: 223 TSSDTLALELLADYLLGYTGGASEGALPDASAITRLIIAGNSVGA--SMTTDVNADSATK 280
Query: 252 SRL-------------FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
R PI LD L +I +P+ +MPG +DPANFSLPQQ ++R +F
Sbjct: 281 KRTGPKKYGYDASAYNASPITRLDSFLAEILPSMPVTLMPGESDPANFSLPQQGIHRAMF 340
Query: 299 PGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-------- 337
P + Y F S TNP +++ R G+SGQ +DD+ +Y
Sbjct: 341 PQARAYCAPPPAGEDKKEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDILRYLNFADEEG 400
Query: 338 ------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQK 391
++ ++ ME LRWR PTAP+TL YPF DPF++++CPH++FAGNQ +
Sbjct: 401 NVADGAGDSEARMRVMEAMLRWRCGVPTAPDTLWSYPFQTHDPFVIQTCPHIFFAGNQPQ 460
Query: 392 FETRLLKGSDRQ---LVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
F+T +++ D VRL+ IPKF ETG V+V+ + LE + F T
Sbjct: 461 FKTAVIEDDDNTSGPRVRLLSIPKFKETGELVLVDTETLEVEVVKFST 508
>gi|159125059|gb|EDP50176.1| DNA polymerase delta subunit 2, putative [Aspergillus fumigatus
A1163]
Length = 554
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 161/483 (33%), Positives = 248/483 (51%), Gaps = 85/483 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ ++ + + I VL++ +G C + GT+Y
Sbjct: 69 QQYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMD 128
Query: 86 MKLKPSILDEYSKERST---TPLVKPHNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVT 141
M LKP+ILD+ S+E T P + HP+ ++LEDESGR++L G+ L + T
Sbjct: 129 MPLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLAT 188
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQK---ELPLNSGEDK-----YVVLVSGLNVGS 193
G+++A+ G E + G+F +D+ L PQ E N E K + VSGL +
Sbjct: 189 GVIIAVLGTENANGDFETIDIRVPDLPPQPRRWERNENRTETKEPSKSKIAFVSGLGITG 248
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-------EIPRGLLNGQNL 246
+S+ L +LL D++ G+ G + A+ I ++IAGNS+ + G
Sbjct: 249 TSSDTLALELLADYLLGYTGSD-----ASSITRLIIAGNSLGANVTAEAAATDMEMGTAA 303
Query: 247 ASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
K R + PI +LD L +I +P+ +MPG +DPANF+LPQQ ++R +
Sbjct: 304 KKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANFALPQQGIHRAM 363
Query: 298 FPGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----SE 339
FP S Y F S TNP +++ R G+SGQ +DD+ +Y S+
Sbjct: 364 FPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRYLDFADSD 423
Query: 340 AND--------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQK 391
A D ++ ME LRWR APTAP+T+ YPF DPF+++SCPH++FAGNQ +
Sbjct: 424 APDAGDGDIEARMRIMEAMLRWRCGAPTAPDTIWSYPFQTNDPFVMQSCPHIFFAGNQPR 483
Query: 392 FETRLLK--------GSDRQL----------VRLVCIPKFSETGVAVVVNLKNLECHTLS 433
F+T +L+ G+D ++ VRL+ IPKF +TG ++V+ + LE +
Sbjct: 484 FKTAVLESDSPLRLNGADTKMTDTAENPGARVRLLSIPKFKDTGELILVDSETLEVELVK 543
Query: 434 FGT 436
FGT
Sbjct: 544 FGT 546
>gi|296807268|ref|XP_002844189.1| DNA polymerase subunit delta-2 [Arthroderma otae CBS 113480]
gi|238843672|gb|EEQ33334.1| DNA polymerase subunit delta-2 [Arthroderma otae CBS 113480]
Length = 549
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 243/487 (49%), Gaps = 84/487 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-WKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQYS IYF RL ++ + + + W+ + + VL++ +G ++GT+Y
Sbjct: 46 QQYSDIYFLRLTRLKPAVSEVAKSAWEGYNIAGEYARRVDRVLDVRQGELSWVVGTVYME 105
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ LKPSI+D+ SKE T + + P+ ++EDESGR+ L G+ L S VT
Sbjct: 106 LPLKPSIMDDISKENWTAAPIPQKTYNDPNSTKPTQTMVEDESGRLVLTGSLLQSSFLVT 165
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKE----------LPLN------------SGE 179
G+VVA+ G E + GEF V+D+ + PQ E +P SG+
Sbjct: 166 GVVVAVLGTENADGEFEVVDIKVPDIPPQPERWEREEPSDGIPAKRKHSAFEGDDSRSGK 225
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIA-----AEIVHVVIAGNSI 234
K + VSGL + + + + LL D++ G+ G G + ++I +VIAGNS+
Sbjct: 226 GKKIAFVSGLGITGTSGDTVSLSLLADYLLGYTGSNPGDGDSISANPSQISRLVIAGNSL 285
Query: 235 EIPRGLLNGQNLASKD-QSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPA 284
S++ Q + + PI LD L+ I +P+ +MPG DPA
Sbjct: 286 GAKTASTGDDAAGSENRQPKKYGYDASAYNASPITLLDTFLSDILPSIPVTLMPGETDPA 345
Query: 285 NFSLPQQPLNRCLFPGSATY---------------NTFRSCTNPHCFELDNVRFLGTSGQ 329
NFSLPQQ ++ + P S Y S TNP +++ RF GTSGQ
Sbjct: 346 NFSLPQQEIHTAMLPQSKAYCAPIAPRREALLAEPGWLDSVTNPWEGDIEGWRFWGTSGQ 405
Query: 330 TIDDLQKYSEAND-------------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
+DD+ +Y + + +L M+ L+WR PTAP+T+ CYPF D+DPF+
Sbjct: 406 NVDDVLRYVDTEELEGEEDEDVQNGVRLRIMDYMLKWRCGVPTAPDTIWCYPFQDKDPFV 465
Query: 377 VESCPHVYFAGNQQKFETRLLKGSDR-------QLVRLVCIPKFSETGVAVVVNLKNLEC 429
++SCPHV+F GNQ F++ +++G D VRL+ +PKF ETG V+++ + L
Sbjct: 466 IQSCPHVFFTGNQPHFQSSIIEGGDWGSGDDNITKVRLIALPKFHETGEIVLLDSETLAV 525
Query: 430 HTLSFGT 436
+ FGT
Sbjct: 526 EVVKFGT 532
>gi|409046235|gb|EKM55715.1| hypothetical protein PHACADRAFT_173871 [Phanerochaete carnosa
HHB-10118-sp]
Length = 508
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/453 (33%), Positives = 235/453 (51%), Gaps = 53/453 (11%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-WKPHL--PICT--VLELEEGRECVIIGTLYKHMKL 88
QY+ IYF RL L+R + WK P+ VLE++ G+ C ++GT+Y M L
Sbjct: 41 HQYANIYFVRLRLLRGFVEENAKRLWKEAAGDPVFVPRVLEVQTGQLCYVVGTVYMDMPL 100
Query: 89 KPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALH 148
KP++LD+ +++ S + D ++LEDESGR++L G L + VTG+++
Sbjct: 101 KPNVLDDVARDHSIPAPPPQQKYCSEKDSVMLEDESGRIRLVGERLKSARVVTGVIMGAL 160
Query: 149 GKETSAGEFLVLDVLDAGLAPQKELPLN---SGEDKYVVLVSGLNVGSGTSNPLQFQLLV 205
G ET+ G+F V+D A + PQ + N S D+++ +VSGL+VG+ Q Q+L
Sbjct: 161 GLETANGDFEVVDFCFAEMPPQHKEADNDRESNSDEWIAVVSGLDVGALDPPDAQLQMLS 220
Query: 206 DHITGHLGDEKEQGIAAEIVHVVIAGNSI--------EIPRGLLNGQNLASKDQSRLFEP 257
+++TG EQ AA I ++IAGNS+ E + GQ + + P
Sbjct: 221 EYLTGEACGSDEQSGAARISRLIIAGNSLAPVVVETQEPEKKPRRGQEVPTFST----HP 276
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNP---H 314
++ L LT IA VP+ ++PG DP+ +PQQ L R +F +A+Y +F TNP H
Sbjct: 277 LRVLSTHLTDIAHSVPIHLLPGAADPSGTIIPQQSLPRAMFGAAASYASFSCETNPTYIH 336
Query: 315 CFELDNVR--------------------------FLGTSGQTIDDLQKY--SEANDQLEF 346
++ L SGQ +DD+ KY S +L
Sbjct: 337 VGAFEDTSSSNTKSNGRASTSKPKSGRSSTPSRTILAHSGQPLDDMFKYLPSPPATRLSI 396
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQ--L 404
E TLRWRH+APTAP+TL C+P+ DPF++ P +Y GNQ +F T++++ ++
Sbjct: 397 AEATLRWRHIAPTAPDTLWCHPYFTTDPFILTETPDLYIVGNQPEFGTKMVRATEESEGR 456
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
R+V +P+F +G V+VNL+ L T+SF
Sbjct: 457 CRIVLVPQFKHSGTVVLVNLRTLSVRTVSFAAH 489
>gi|70994498|ref|XP_752028.1| DNA polymerase delta subunit 2 [Aspergillus fumigatus Af293]
gi|66849662|gb|EAL89990.1| DNA polymerase delta subunit 2, putative [Aspergillus fumigatus
Af293]
Length = 554
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 159/483 (32%), Positives = 246/483 (50%), Gaps = 85/483 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ ++ + + I VL++ +G C + GT+Y
Sbjct: 69 QQYGDMYFLRLARLKPVVEEVGTDAWEGFSIAGERARRVERVLDVRQGELCWVAGTVYMD 128
Query: 86 MKLKPSILDEYSKERST---TPLVKPHNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVT 141
M LKP+ILD+ S+E T P + HP+ ++LEDESGR++L G+ L + T
Sbjct: 129 MPLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGSLLTSTQLAT 188
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQK---ELPLNSGEDK-----YVVLVSGLNVGS 193
G+++A+ G E + G+F +D+ L PQ E N E K + VSGL +
Sbjct: 189 GVIIAVLGTENANGDFETIDIRVPDLPPQPRRWERNENRTETKEPHKSKIAFVSGLGITG 248
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-------EIPRGLLNGQNL 246
+S+ L +LL D++ G+ G + A+ I ++IAGNS+ + G
Sbjct: 249 TSSDTLALELLADYLLGYTGSD-----ASSITRLIIAGNSLGANVTAEAAATDMEMGTAA 303
Query: 247 ASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
K R + PI +LD L +I +P+ +MPG +DPANF+LPQQ ++R +
Sbjct: 304 KKKTGPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANFALPQQGIHRAM 363
Query: 298 FPGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ- 343
FP S Y F S TNP +++ R G+SGQ +DD+ +Y + D+
Sbjct: 364 FPRSRAYCAPPPPGDEAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRYLDFADRD 423
Query: 344 ------------LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQK 391
+ ME LRWR APTAP+T+ YPF DPF+++SCPH++FAGNQ +
Sbjct: 424 APDAGDGDIEARMRIMEAMLRWRCGAPTAPDTIWSYPFQTNDPFVMQSCPHIFFAGNQPR 483
Query: 392 FETRLLK--------GSDRQL----------VRLVCIPKFSETGVAVVVNLKNLECHTLS 433
F+T +L+ G+D ++ VRL+ IPKF +TG ++V+ + LE +
Sbjct: 484 FKTAVLESDSPLRLNGADTKMTDTAENPGARVRLLSIPKFKDTGELILVDSETLEVELVK 543
Query: 434 FGT 436
FGT
Sbjct: 544 FGT 546
>gi|115397999|ref|XP_001214591.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192782|gb|EAU34482.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 541
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 157/493 (31%), Positives = 248/493 (50%), Gaps = 84/493 (17%)
Query: 28 KETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVII 79
+E + QQY +YF RL ++ + + + I VL++ +G C +
Sbjct: 41 QERHYQQQYGDMYFLRLAKLKPAVEKVAVDAWEGFSIAGERARRVDRVLDVRQGELCWVA 100
Query: 80 GTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM---HPD-DHLVLEDESGRVKLGGAELL 135
GT+Y M LKP+ILD+ +KE T ++ HP+ ++LEDESGR++L G+ L
Sbjct: 101 GTIYMDMPLKPNILDDLTKENFTLAPPPRRTYLDPAHPELTQIMLEDESGRLRLTGSMLQ 160
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ--------KELPLNSGEDKYVVLVS 187
+ TG ++A+ G E + G+F +D+ LAPQ + + + VS
Sbjct: 161 STQLATGAIIAVLGTENANGDFEAIDIKVPDLAPQPQRWERDTTQASQKTPAKGKIAFVS 220
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHL-----GD-EKEQGIAAEIVHVVIAGNSIEIPRGLL 241
GL + + + + LL D++ G++ GD ++ A++I +VIAGNSI +
Sbjct: 221 GLGITGNSGDTIALDLLTDYLLGYMDSPSIGDNDRTTSDASKITRLVIAGNSIGTSMTVD 280
Query: 242 ---NGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
NG K+ + + PI +LD L +I +P+ +MPG +DPANFSLP
Sbjct: 281 ANDNGSGPKKKNAPKKYGYDASAYNASPITQLDSFLAEILPSIPVTLMPGASDPANFSLP 340
Query: 290 QQPLNRCLFPGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336
QQ ++R +FP + Y F S TNP +++ R G+SGQ +DD+ +
Sbjct: 341 QQGIHRAMFPQARAYCAPPPTAGQAPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLR 400
Query: 337 Y--------------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPH 382
Y +A +++ ME LRWR PTAP+T+ YPF DPF+++SCPH
Sbjct: 401 YLDFADEYGTGESANGDAEARMKIMEAMLRWRCAVPTAPDTIWSYPFQTDDPFVMQSCPH 460
Query: 383 VYFAGNQQKFETRL--------LKGSDRQL-----------VRLVCIPKFSETGVAVVVN 423
++FAGNQ +F+T + L G D ++ VRL+ IP FS+TG V+V+
Sbjct: 461 IFFAGNQPQFKTAVIEGDSPLRLNGGDTEMTDADEDNSGPRVRLLSIPSFSKTGELVLVD 520
Query: 424 LKNLECHTLSFGT 436
+ LE + FGT
Sbjct: 521 AETLEVEVVKFGT 533
>gi|255936291|ref|XP_002559172.1| Pc13g07420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583792|emb|CAP91811.1| Pc13g07420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 541
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 243/484 (50%), Gaps = 82/484 (16%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ + + + L I VL++ +G C + GT+Y H
Sbjct: 49 QQYDDMYFLRLAKLKPTVEQVATDAWDGLTIAGEKVRRVDRVLDVRQGELCWVAGTVYMH 108
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ +KP+IL++ SKE T+ + P D ++LEDESGR++L G L + T
Sbjct: 109 LPMKPNILEDLSKENFTSAPPPLRTYTDPSDPSLTQIMLEDESGRLRLTGNFLQSTQLAT 168
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKE-----LPLNSGEDKY--VVLVSGLNVGSG 194
G ++A G E + G+F V+D+ LAPQ + P E ++ + VSGL +
Sbjct: 169 GAIIAALGTENANGDFEVIDIKLPDLAPQLQRWNGNAPETGVEKEHGKIAFVSGLGITGT 228
Query: 195 TSNPLQFQLLVDHITGHLG-----DEKEQGIAAEIVHVVIAGNSIEIP-----RGLLNGQ 244
+S+ L LL D++ G+ G D +++I +VIAGNS+ +G+
Sbjct: 229 SSDTLALDLLTDYLLGYTGFSGHGDNSPSLGSSKISRLVIAGNSLGASVIGDVASANSGE 288
Query: 245 NLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
A Q + + PI +LD L +I +P+ +MPG DPANFSLPQQ ++R
Sbjct: 289 AAAKNAQPKKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGEKDPANFSLPQQGIHR 348
Query: 296 CLFPGSATYNT-------------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----- 337
+FP + Y+ F S TNP +++ R G SGQ +DD+ +Y
Sbjct: 349 TMFPQARAYSAPPVRGDEKPEAGWFDSVTNPWDGDVEGWRLWGCSGQNVDDVLRYISIEG 408
Query: 338 --------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ 389
+++ ++ ME LRWR PTAP+T+ YP+ DP+++ESCPH++F GNQ
Sbjct: 409 GNSTPDEEKDSDARIRIMEAMLRWRCGVPTAPDTIWSYPYQSDDPYVIESCPHIFFVGNQ 468
Query: 390 QKFETRLLK------------------GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHT 431
+F+T ++ GSD VRL+ +PKFSETG ++V+ + LE
Sbjct: 469 PQFKTATIEGDVPLRLDGDTEMTGTADGSDAARVRLLALPKFSETGELILVDTETLEVEV 528
Query: 432 LSFG 435
+ FG
Sbjct: 529 VKFG 532
>gi|354543385|emb|CCE40104.1| hypothetical protein CPAR2_101420 [Candida parapsilosis]
Length = 477
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 150/387 (38%), Positives = 226/387 (58%), Gaps = 25/387 (6%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C +IGT++ K K +IL++ K ++P +++ + ++LEDES
Sbjct: 87 ILDIVGGKLCWVIGTVFVDAKYKLNILNDVEKGTDDVLPLEPVSYLSDSEQPVVMLEDES 146
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY- 182
GR L E L + VTG +VA+ G E AG F ++DV APQK PL++GE +
Sbjct: 147 GRAILHNDEFLQHNLLVTGCIVAVLGIEIQAGIFEIMDVAYPECAPQK--PLSNGETRSG 204
Query: 183 -VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI------- 234
V LVSGL++G L+ +LL ++ G LG + E+ I + I ++IAG+SI
Sbjct: 205 KVALVSGLDIGLEGHYDLKLELLKQYLLGELGSDDEKQINSNIAQLIIAGDSIEPLQQID 264
Query: 235 --EIPRGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
E + + N SK+ S+ E +K+LD + + +P+ +MPG +DPA +PQQ
Sbjct: 265 EEEDMKNYITTNNYGSKNISKYNNESLKQLDQFINDLIVTMPISVMPGDHDPAEICIPQQ 324
Query: 292 PLNRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY--SEAN-DQLE 345
PL++ LF + + TNP ELD VR LGTSGQ ++D++KY EA+ D L+
Sbjct: 325 PLHKSLFKTNRAILESDRLSRLTNPTWLELDKVRMLGTSGQNVNDVKKYVTREADSDSLK 384
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES-CPHVYFAGNQQKFETRLLKGSDR-Q 403
M+ +++W++ PTAP+TL CYPF + DPF+ ES PHVYF GNQ KFET + K D
Sbjct: 385 VMKSSMKWQNFVPTAPDTLYCYPFDNSDPFIFESELPHVYFVGNQDKFETDVYKCPDSGA 444
Query: 404 LVRLVCIPKFSETGVAVVVNLKNLECH 430
VRL+ IP+F TG V+++L LE
Sbjct: 445 QVRLISIPQFKATGEFVILDLNTLEVE 471
>gi|340716397|ref|XP_003396685.1| PREDICTED: DNA polymerase delta small subunit-like [Bombus
terrestris]
Length = 445
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 159/430 (36%), Positives = 232/430 (53%), Gaps = 26/430 (6%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPICTVLELEEGRE---CVII 79
F I ++ + QQY IY ARL ++ LL W H I T+ +L E E C+II
Sbjct: 22 FNISEQRFE-QQYCSIYKARLKALKDHLLQKAKIKWG-HNKIVTLEQLSERNENDTCIII 79
Query: 80 GTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAY 139
GTLYKH +LKPS+L E S E N+ D L LEDE+ R+KL +
Sbjct: 80 GTLYKHQELKPSLLRELSTELQLQTQPARANYASFKDILYLEDETLRIKLVDNHINIQDV 139
Query: 140 VTGIVVALHGKETSAGEFLVLDVLDAGLAPQK---ELPLNSGEDKYVVLVSGLNVGSGTS 196
VTGIV A+ G + GE V+D G P+ + PL + ++++SGL++ +
Sbjct: 140 VTGIVCAVLGHDLKDGELSVIDWCLPGCCPKLSTFDRPLET--QGKILIISGLDLANNLQ 197
Query: 197 NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL-----ASKDQ 251
+ L LL + ITG +G E+ A IV ++IAGNS+ RG + N +
Sbjct: 198 S-LSTDLLFEWITGMIGCEEVHKDVASIVCIIIAGNSV---RGSVETHNYKDYFETNAHD 253
Query: 252 SRLFEPIK----ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
+ +F+ +LD L I P+ +MPG DP +LPQQPL+ C+ P + +F
Sbjct: 254 AAIFKETASVTHKLDNFLHPIIQCCPIILMPGEFDPTCHTLPQQPLHPCILPQCFRFKSF 313
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWRHLAPTAPNTLG 365
TNP +++ G+SGQ I D+ K + D L ++ERTL WRH APTAP+T+
Sbjct: 314 YGVTNPWIGSINSRIVAGSSGQPIIDIMKVAGLVDISPLMWLERTLLWRHYAPTAPDTIP 373
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLK 425
YP ++ DPF++ CP +YF GN K++T+L + Q +RL+CIP FS+T V+VNL+
Sbjct: 374 AYPSSEIDPFIITECPDIYFVGNMDKYDTKLFTADEGQTIRLICIPTFSKTQTGVLVNLQ 433
Query: 426 NLECHTLSFG 435
+LE +SF
Sbjct: 434 DLETWPISFA 443
>gi|328789089|ref|XP_001122961.2| PREDICTED: DNA polymerase delta small subunit-like [Apis mellifera]
Length = 444
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 161/446 (36%), Positives = 240/446 (53%), Gaps = 23/446 (5%)
Query: 6 EEARLQRKQATYIFLD-EPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPI 64
E + + + ++ F D + FEI + + QQY IY ARL ++ + V H I
Sbjct: 2 EVPQFKYNRKSFKFDDFKKFEIFTQCSK-QQYCNIYNARLKALKDHILEKVKIKWAHYEI 60
Query: 65 CTVLELEEGRE---CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLE 121
++ +L E + C+IIGTLYKH +L+ SIL+E S+E P N+ D L LE
Sbjct: 61 VSLSQLCERNQNNTCIIIGTLYKHQELRSSILNELSEELQLIPQPARTNYASFKDILYLE 120
Query: 122 DESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG--- 178
DE+ R+KL G VTGIV A+ G E G FLV D G P+ + NS
Sbjct: 121 DETLRIKLVGTHKNIQDIVTGIVCAVCGHELENGAFLVTDWCFPGCYPKLSI-FNSQPLE 179
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR 238
+ ++++SGL++ + + L LL + ITG +G E+ A IV ++IAGNSI R
Sbjct: 180 KQGKILIISGLDLANNLQS-LSINLLFEWITGMIGCEEVHKEVASIVCIIIAGNSI---R 235
Query: 239 GLLNGQNLASKDQSRLF-EPI--------KELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
G + N + +++L E I +LD L IA P+ +MPG DP LP
Sbjct: 236 GSIETYNYKNYFETKLHNEAIFKETANITHKLDNFLHSIAQCCPIILMPGEFDPTYHRLP 295
Query: 290 QQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN-DQLEFME 348
QQP + C+ P + + +F TNP +++ G+SGQ I D+ K + + L ++E
Sbjct: 296 QQPFHPCILPECSRFKSFYGVTNPWVGSINSRIIAGSSGQPIMDIMKIAGLDISPLIWLE 355
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
RTL W H APTAPNT Y + DPF++ CP +YF GN K++T++ + Q +RL+
Sbjct: 356 RTLLWCHYAPTAPNTTPTYSSSKIDPFIITECPDIYFVGNMDKYDTKIYIAEEGQTIRLI 415
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSF 434
CIPKFS+T V+V+L++L +SF
Sbjct: 416 CIPKFSKTQTGVLVDLQDLNTWPISF 441
>gi|392577101|gb|EIW70231.1| hypothetical protein TREMEDRAFT_68559 [Tremella mesenterica DSM
1558]
Length = 489
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 161/476 (33%), Positives = 252/476 (52%), Gaps = 53/476 (11%)
Query: 7 EARLQRKQATYIFLDE---PFEIQKET--YRGQQYSQIYFARLHLMRALL-------YSL 54
E R++R +Y L E PF + T Y+ QYS IYF RL +R ++ +
Sbjct: 9 EGRVKRPTTSYSSLTELSAPFLLDPSTRNYK-HQYSNIYFVRLVELRPIVEERATERWGN 67
Query: 55 VPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHP 114
+ P LP +L L+ + C I+GT+Y M LKP+IL++ +++ P F
Sbjct: 68 IRGKPPLLP--RILNLQRSQLCYIVGTVYMEMPLKPNILEDMARDHWIAPPAPRPKFYSA 125
Query: 115 DDHLVLEDESGRVKLGGAELLP------SAYVTGIVVALHGKETSAGEFLVLDVLDAGL- 167
D + LEDESGRVKL G ++ VTG+++A G ETS+G+F V+D+ AG+
Sbjct: 126 QDAVHLEDESGRVKLIGEKIKKERDREGGGLVTGVIMAALGMETSSGDFEVIDLCFAGMP 185
Query: 168 ---------------------APQKELPL--NSGEDKYVVLVSGLNVGSGTSNP-LQFQL 203
A K + + ++GE +V +VSGL VG+ + L+ QL
Sbjct: 186 DVYKPAAGPSNGHINGKGKARARTKNMDIEGDNGEKTWVAIVSGLCVGAEEAPADLKVQL 245
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ-----NLASKDQSRLFEPI 258
L++ +TG G ++ + I +++AGN++ P + Q N ++K
Sbjct: 246 LLEWLTGECGGLRDLEDGSRIARLILAGNTLAQPVKGRDDQKPKRFNNSTKPIYSSHPTK 305
Query: 259 KELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFEL 318
+L +++ +P+ ++PGP+DPA +LPQQPL + + G A SCTNP E+
Sbjct: 306 SLQLLLSDLLSSSLPITLIPGPSDPAGATLPQQPLPKVMLGGKAKMTGLESCTNPSWIEV 365
Query: 319 DNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
+ F + GQT+DD+ KY ++ +L +RTL WRH+APTAP+TL YPF D DPF++
Sbjct: 366 GDRSFFLSGGQTVDDIYKYIPSSGRLGMAKRTLEWRHVAPTAPDTLWIYPFPDADPFVIH 425
Query: 379 SCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
P VY G Q +FET ++ D R++ +P F +TG V++ L+ LEC T+ F
Sbjct: 426 HRPDVYIIGCQPEFETVIV--GDDSPTRIILVPGFVKTGQVVLLCLETLECKTVEF 479
>gi|358366085|dbj|GAA82706.1| DNA polymerase delta subunit 2 [Aspergillus kawachii IFO 4308]
Length = 532
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 162/485 (33%), Positives = 248/485 (51%), Gaps = 85/485 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ + + V W+ + VL++ +G C + GT+Y
Sbjct: 43 QQYGDMYFLRLAKLKPAVEEIAVEAWEGFSIAGENARRVERVLDVRQGELCWVAGTIYMD 102
Query: 86 MKLKPSILDEYSKERST-TPLVKP--HNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVT 141
M LKP+ILD+ +KE T P +P + HP+ ++LEDESGR++L G+ L + T
Sbjct: 103 MPLKPNILDDLTKENYTLAPPPRPTYQDPAHPELTQIMLEDESGRLRLTGSMLRNTQLCT 162
Query: 142 GIVVALHGKETSAGEFLVLD--VLDAGLAPQK------ELPLNSGEDKYVVLVSGLNVGS 193
G ++A+ G E + G+F V+D V D P++ + P + + K + VSGL +
Sbjct: 163 GAIIAVLGTENANGDFEVIDTKVPDLPQQPRRWGNDTLDAPKGASKGK-IAFVSGLGITG 221
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGI--AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251
+S+ L +LL D++ G+ G E + A+ I ++IAGNSI + N S +
Sbjct: 222 TSSDTLALELLADYLLGYTGGASEGALPDASAITRLIIAGNSIGA--SMTTDVNADSSTK 279
Query: 252 SRL-------------FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
R PI LD L +I +P+ +MPG +DPANFSLPQQ ++R +F
Sbjct: 280 KRTGPKKYGYDASAYNASPITRLDSFLAEILPSMPVTLMPGESDPANFSLPQQGIHRAMF 339
Query: 299 PGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ-- 343
P + Y + F S TNP +++ R G+SGQ +DD+ +Y D+
Sbjct: 340 PQARAYCAPPPAGDNKQEPSWFDSVTNPWEGDVEGWRLWGSSGQNVDDILRYLNFADEEG 399
Query: 344 ------------LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQK 391
+ ME LRWR PTAP+TL YPF DPF++++CPH++FAGNQ +
Sbjct: 400 NVADGAGDIEARMRVMEAMLRWRCGVPTAPDTLWSYPFQTHDPFVIQTCPHIFFAGNQPQ 459
Query: 392 FETRL--------LKGSDRQL------------VRLVCIPKFSETGVAVVVNLKNLECHT 431
F+T + L G+D ++ VRL+ IPKF ETG V+V+ + LE
Sbjct: 460 FKTAVIEGDAPLKLNGADTEMTGTDDDNTSGPRVRLLSIPKFKETGELVLVDTETLEVEV 519
Query: 432 LSFGT 436
+ F T
Sbjct: 520 VKFST 524
>gi|242808477|ref|XP_002485172.1| DNA polymerase delta subunit 2, putative [Talaromyces stipitatus
ATCC 10500]
gi|218715797|gb|EED15219.1| DNA polymerase delta subunit 2, putative [Talaromyces stipitatus
ATCC 10500]
Length = 545
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 247/501 (49%), Gaps = 90/501 (17%)
Query: 24 FEIQKETYRG--QQYSQIYFARLHLM--------RALLYSLVPNWKPHLPICTVLELEEG 73
F++ K R QQY +YF RL + R + + VL++ +G
Sbjct: 35 FQLPKADSRKYQQQYGDLYFLRLAKLKPAAEKVGREAWDGFTIAGEKARKVDRVLDVRQG 94
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKER---STTPLVKPHNFMHPDD-HLVLEDESGRVKL 129
C + GT+Y + LKP+ILD+ +K+ + P + ++PD ++LEDESGR+++
Sbjct: 95 ALCWVTGTVYMDLPLKPNILDDVAKDNYAAAPPPRTTYIDPLNPDKTQVMLEDESGRLRM 154
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDV----------------LDAGLAPQKEL 173
G L + VTG+++A+ G E S G+F V+D+ D + K +
Sbjct: 155 TGTMLRTTHLVTGVIIAVLGTENSNGDFEVIDIKVPDFPVQPPRWELASTDKTESTIKRV 214
Query: 174 PLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
+G+ + +SGL + +S+ L +LL D++ G+ G E A I ++IAGNS
Sbjct: 215 ENTTGKSSKIAFISGLGITGSSSDTLALELLTDYLLGYTGPGGEDESPARISRLIIAGNS 274
Query: 234 I-----EIPRGLLNGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPG 279
+ +NG A K + + PI +LD L+++ +P+ +MPG
Sbjct: 275 LGNLETATAAAAMNGDGTAKKKVPKKYGYDASSYNASPITQLDNFLSELLPSLPVTLMPG 334
Query: 280 PNDPANFSLPQQPLNRCLFPGSATYNT-------------FRSCTNPHCFELDNVRFLGT 326
NDPANFSLPQQ ++R + P + Y++ F + TNP +D RF G
Sbjct: 335 ENDPANFSLPQQGIHRAMLPRAKAYSSDGLPGDTSVEPGWFDNVTNPWEGYVDGWRFWGC 394
Query: 327 SGQTIDDLQKYSEANDQ--------------LEFMERTLRWRHLAPTAPNTLGCYPFTDR 372
SGQ +DD+ +Y + D+ ++ ME LRWR PTAP+TL CYPF
Sbjct: 395 SGQNVDDVLRYLDFADEDGNATNSDGDGETSVQIMEAMLRWRCAVPTAPDTLWCYPFQTH 454
Query: 373 DPFLVESCPHVYFAGNQQKFETRL--------LKGSDRQL-----------VRLVCIPKF 413
DPF++++CPH++F GNQ F+T + L G D ++ VRLV IPKF
Sbjct: 455 DPFILQACPHLFFIGNQSHFKTVVVVSEPAFRLDGPDTEMSNSADEPLATHVRLVSIPKF 514
Query: 414 SETGVAVVVNLKNLECHTLSF 434
ETG ++V+ + LE + F
Sbjct: 515 HETGELILVDSETLEVDVVKF 535
>gi|119500938|ref|XP_001267226.1| DNA polymerase delta subunit 2, putative [Neosartorya fischeri NRRL
181]
gi|119415391|gb|EAW25329.1| DNA polymerase delta subunit 2, putative [Neosartorya fischeri NRRL
181]
Length = 554
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/484 (32%), Positives = 241/484 (49%), Gaps = 87/484 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ ++ + + I VL++ +G C + GT+Y
Sbjct: 69 QQYGDMYFLRLARLKPVVEEVGMDAWEGFSIAGERARRVERVLDVRQGELCWVGGTVYMD 128
Query: 86 MKLKPSILDEYSKERST---TPLVKPHNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVT 141
M LKP+ILD+ S+E T P + HP+ ++LEDESGR++L G L + T
Sbjct: 129 MPLKPNILDDLSRESHTLAPPPRRTYQDPAHPELTQIMLEDESGRLRLTGNLLRSTQLAT 188
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY---------VVLVSGLNVG 192
G ++A+ G E + G+F +D+ L PQ ED+ + VSGL +
Sbjct: 189 GAIIAVLGTENANGDFETIDIRVPDLPPQPRR-WERDEDRTDTKESRKGKIAFVSGLGIT 247
Query: 193 SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-------EIPRGLLNGQN 245
+S+ L +LL D++ G+ G + A+ I ++IAGNS+ G G
Sbjct: 248 GTSSDTLALELLTDYLLGYTGSD-----ASSITRLIIAGNSLGANVTAEAAATGPETGAA 302
Query: 246 LASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
K R + PI +LD L +I +P+ +MPG +DPANF+LPQQ ++R
Sbjct: 303 AKKKMAPRKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGESDPANFALPQQGIHRA 362
Query: 297 LFPGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ 343
+FP + Y F S TNP +++ R G+SGQ +DD+ +Y + D+
Sbjct: 363 MFPRARAYCAPPPSGEETPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRYLDFADR 422
Query: 344 -------------LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQ 390
+ ME LRWR PTAP+T+ YPF DPF+++SCPH++FAGNQ
Sbjct: 423 DALDAGDGDIEARMRIMEAMLRWRCGVPTAPDTIWSYPFQTNDPFVMQSCPHIFFAGNQP 482
Query: 391 KFETRL--------LKGSDRQL----------VRLVCIPKFSETGVAVVVNLKNLECHTL 432
+F+T + LKG+D ++ VRL+ IPKF ETG ++VN + LE +
Sbjct: 483 RFKTAVLEGDSPLRLKGADTKMTDAAENAGARVRLLSIPKFKETGELILVNSETLEVELV 542
Query: 433 SFGT 436
FG
Sbjct: 543 KFGA 546
>gi|392567417|gb|EIW60592.1| hypothetical protein TRAVEDRAFT_165502 [Trametes versicolor
FP-101664 SS1]
Length = 536
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 244/488 (50%), Gaps = 85/488 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-WK-----PHLPICTVLELEEGRECVIIGTLYKHMK 87
QYS IYF RL +R + W P + VL++E+G+ C IIGT+Y M
Sbjct: 41 HQYSNIYFVRLRALRQHVEQRAKGRWNEVAGNPVF-VPRVLDVEKGQLCFIIGTVYMDMP 99
Query: 88 LKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVAL 147
LKP++L++ +++RS F +D ++LEDESGR+ L G + + VTG+++
Sbjct: 100 LKPNVLEDVARDRSLPAPPPREKFYSDEDSIMLEDESGRICLVGDRIRSACLVTGVILGA 159
Query: 148 HGKETSAGEFLVLDVLDAGLAPQK----ELP----------------LNSGEDKYVVLVS 187
G ET G+F V+D+ G+APQ E P ++ D+++ LVS
Sbjct: 160 LGIETHNGDFEVVDLCYPGMAPQPSAGIEWPAPTVKGDAMDVDGSASTSASSDEWIALVS 219
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL VG+ + Q Q+L +++ + +EQ AA I ++IAGNS+ G + N
Sbjct: 220 GLEVGATNPSDGQIQMLAEYLAAEISSSEEQSQAARISRLIIAGNSLGALTGHTDVINGE 279
Query: 248 SKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
++ +SR + P + L LT + +P+ ++PGP+DPA LPQQPL R +F
Sbjct: 280 TERKSRRYGNEASSFTPHPTQNLAAHLTDVCRSIPVHLLPGPSDPAATILPQQPLPRAMF 339
Query: 299 PGSATYNTFRSCTNPHCFEL--------------------DNVRFLGT------------ 326
G++ Y TF S +NP +L + GT
Sbjct: 340 GGASHYATFLSESNPTYIQLAPNDPSAQSSSRASQPGASSSKPKTNGTSAASEGTTRPTR 399
Query: 327 -----SGQTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES 379
SGQ +DD+ KY S ++ +E TLRWRH+APTAP+TL C+P+ +DPF++
Sbjct: 400 TIFVHSGQPVDDMFKYVPSPPISRMTLVEATLRWRHMAPTAPDTLWCHPYFAKDPFVITQ 459
Query: 380 CPHVYFAGNQQKFETRLLKGSD----------RQLVRLVCIPKFSETGVAVVVNLKNLEC 429
P VY GNQ F T+L++ + ++ R+V +P F ++G V+VN++ L
Sbjct: 460 TPDVYVVGNQPAFATKLVRDDEQDEDESGARAQKRCRIVLLPSFKDSGTLVLVNMRTLAV 519
Query: 430 HTLSFGTQ 437
+ F +
Sbjct: 520 RKVQFAVE 527
>gi|303316123|ref|XP_003068066.1| DNA polymerase alpha subunit B family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240107742|gb|EER25921.1| DNA polymerase alpha subunit B family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|320032434|gb|EFW14387.1| DNA polymerase delta subunit 2 [Coccidioides posadasii str.
Silveira]
Length = 559
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 162/503 (32%), Positives = 244/503 (48%), Gaps = 92/503 (18%)
Query: 28 KETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVII 79
K + QQY+ IYF RL ++ + + I VL++ +G C ++
Sbjct: 42 KTRHYQQQYADIYFLRLARLKPAVAEIAAAEWEEFTIAGENARRVDRVLDVRQGELCWVV 101
Query: 80 GTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELL 135
GT+Y + LKP+ILD+ SKE T ++ P + +LED SGR++L G L
Sbjct: 102 GTVYMDLPLKPNILDDISKEHWTAAPPSRKTYLDPSNQGGTQTMLEDGSGRLRLTGTLLQ 161
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ--------------------KELPL 175
+ VTG VVA+ G E + G+F V+DV LAPQ E P+
Sbjct: 162 SALLVTGAVVAVLGTENANGDFEVVDVKVPDLAPQPARWESQYADSASGKRKRSPSETPV 221
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH------LGDEKEQGIAAEIVHVVI 229
+ G K + L+SGL + + + + LL D++ G+ +G +A+I ++I
Sbjct: 222 D-GPRKKIALLSGLGITGTSGDTVALTLLTDYLLGYGEGYGNVGTGSSPIRSAQISRLII 280
Query: 230 AGNSI--EIPRGLLNGQNLASKDQSRLFE------------PIKELDILLTQIAAGVPLD 275
AGNS+ +P L A+ + R + PI LD L +I +P+
Sbjct: 281 AGNSLGSSVPPSLEEQDEDAAVKKRRQAKKYGYDASAYNASPITHLDNFLAEILPSIPVT 340
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDN 320
IMPG NDPANF+LPQQ ++R + P S Y + + TNP +++
Sbjct: 341 IMPGENDPANFALPQQEIHRAMLPRSRNYCSAPRLGIDEPPSEPGWLDTVTNPWQGDVEG 400
Query: 321 VRFLGTSGQTIDDLQKYSEAND-------------QLEFMERTLRWRHLAPTAPNTLGCY 367
R G SGQ +DD+ +Y +D +L ME LRWR PTAP+T+ CY
Sbjct: 401 WRLWGCSGQNVDDVLRYMSLDDDQTENGQDIEGDTRLRLMEAMLRWRCAVPTAPDTIWCY 460
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLL-----------KGSDRQLVRLVCIPKFSET 416
PF D+DPF++++CPHV+F GNQ F T ++ +G VRL+ +PKF ET
Sbjct: 461 PFQDKDPFVLQACPHVFFTGNQPAFRTTVIEKSVSASSMDVEGDQPSKVRLLALPKFRET 520
Query: 417 GVAVVVNLKNLECHTLSFGTQFS 439
G V+++ + LE + FGT S
Sbjct: 521 GELVLLDAETLEVEVVKFGTWQS 543
>gi|242223029|ref|XP_002477193.1| predicted protein [Postia placenta Mad-698-R]
gi|220723408|gb|EED77603.1| predicted protein [Postia placenta Mad-698-R]
Length = 503
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 239/472 (50%), Gaps = 74/472 (15%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-W-----KPHLPICTVLELEEGRECVIIGTLYKHMK 87
QYS IY+ RL ++R + + W +P + + VL++ +G+ +IGT+Y M
Sbjct: 35 HQYSSIYYVRLQVLRKYVMARARRRWHDVAGRP-IYVGRVLDVIKGQLSYVIGTVYMDMP 93
Query: 88 LKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVAL 147
+KP++L++ +++ S + DD +LEDESGR+ L G + + VTG+V+ +
Sbjct: 94 MKPNVLEDLARDHSLPAPAPRMTYCSQDDQPMLEDESGRIALVGERIRSARLVTGVVLGI 153
Query: 148 HGKETSAGEFLVLDVLDAGLAPQKELPLNSGE---------------------------- 179
G ETS GEF V+D+ AG+APQ LN GE
Sbjct: 154 LGIETSGGEFEVVDICTAGMAPQPYSDLNWGESSAGSSQEGKAEKMDVDGMCVSSKSYYL 213
Query: 180 -----------------DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAA 222
D++V ++SGL +GS + Q Q+L +++TG G +Q AA
Sbjct: 214 YLTQKLCVETPVPGQEQDEWVAILSGLEIGSTSPADAQIQMLAEYLTGEAGGLDDQASAA 273
Query: 223 EIVHVVIAGNSIE--------IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPL 274
I +++AGNS+ +P + + + S + S P + L +T IA +P+
Sbjct: 274 RISRLIVAGNSLAHILNADGTVPEEKMERKGVYSANFSP--HPTQTLAAHITDIARTMPI 331
Query: 275 DIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVR----FLGTSGQT 330
++PG +DPA LPQQP R +F +A + +F TNP + FL +SGQ
Sbjct: 332 HVLPGASDPAGTLLPQQPFPRAMFGSAAAFASFTCETNPTYLRAVSATPFRTFLVSSGQP 391
Query: 331 IDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+DD+ KY S + +L E +LRWRH+APTAP+TL C+P+ DPF++ P VY G
Sbjct: 392 VDDMLKYLPSPLSTRLSIAEASLRWRHIAPTAPDTLWCHPYFGSDPFVISETPDVYIVGC 451
Query: 389 QQKFETRLLKGSDR------QLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
Q +F TR+ D + R+V +P F ETG V++N++ L T+ F
Sbjct: 452 QPRFGTRVEGEEDMEGEGGVKRCRVVLVPGFRETGTLVLLNMRTLAVKTVQF 503
>gi|317038112|ref|XP_001401596.2| DNA polymerase delta subunit 2 [Aspergillus niger CBS 513.88]
Length = 533
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 160/485 (32%), Positives = 248/485 (51%), Gaps = 85/485 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ + + V W+ + VL++ +G C + GT+Y
Sbjct: 44 QQYGDMYFLRLAKLKPAVEEIAVEAWEGFSIAGENARRVERVLDVRQGELCWVAGTIYMD 103
Query: 86 MKLKPSILDEYSKERST-TPLVKP--HNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVT 141
M LKP+ILD+ +KE T P +P + HP+ ++LEDESGR++L G+ L + T
Sbjct: 104 MPLKPNILDDLTKENYTLAPPPRPTYQDPAHPELTQIMLEDESGRLRLTGSMLRNTQLCT 163
Query: 142 GIVVALHGKETSAGEFLVLD--VLDAGLAPQK------ELPLNSGEDKYVVLVSGLNVGS 193
G ++A+ G E + G+F V+D V D P++ + P + + K + VSGL +
Sbjct: 164 GAIIAVLGTENANGDFEVIDTKVPDLPQQPRRWGSDTLDAPTGAMKGK-IAFVSGLGITG 222
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGI--AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251
+S+ L +LL D++ G+ G E + A+ I ++IAGNS+ + N S +
Sbjct: 223 TSSDTLALELLADYLLGYTGGASEGALPDASAITRLIIAGNSVGA--SMTTDVNADSATK 280
Query: 252 SRL-------------FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
R PI LD L +I +P+ +MPG +DPANFSLPQQ ++R +F
Sbjct: 281 KRTGPKKYGYDASAYNASPITRLDSFLAEILPSMPVTLMPGESDPANFSLPQQGIHRAMF 340
Query: 299 PGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-------- 337
P + Y F S TNP +++ R G+SGQ +DD+ +Y
Sbjct: 341 PQARAYCAPPPAGEDKKEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDILRYLNFADEEG 400
Query: 338 ------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQK 391
++ ++ ME LRWR PTAP+TL YPF DPF++++CPH++FAGNQ +
Sbjct: 401 NVADGAGDSEARMRVMEAMLRWRCGVPTAPDTLWSYPFQTHDPFVIQTCPHIFFAGNQPQ 460
Query: 392 FETRL--------LKGSDRQL------------VRLVCIPKFSETGVAVVVNLKNLECHT 431
F+T + L G+D ++ VRL+ IPKF ETG V+V+ + LE
Sbjct: 461 FKTAVIEGDAPLKLNGADTEMTGTDDDNTSGPRVRLLSIPKFKETGELVLVDTETLEVEV 520
Query: 432 LSFGT 436
+ F T
Sbjct: 521 VKFST 525
>gi|71021785|ref|XP_761123.1| hypothetical protein UM04976.1 [Ustilago maydis 521]
gi|46100573|gb|EAK85806.1| hypothetical protein UM04976.1 [Ustilago maydis 521]
Length = 510
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 35/407 (8%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESG 125
+L++ +G C ++G LY M LKP +L++ ++E+ P V+ + D L +ED+SG
Sbjct: 104 ILDVRQGDICYVVGNLYCAMPLKPDVLEDLTREQWLAPQPVRSKYVDYAKDELFIEDQSG 163
Query: 126 RVKLGGAEL-----LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLA-----------P 169
RVKL G + L S +TG+V A+ G ET AG+F V+D + A L P
Sbjct: 164 RVKLVGEAIRGGTALRSMLITGVVAAVLGTETRAGDFDVVDAVFASLPNQPSTKKSLQDP 223
Query: 170 QKELPLNSGEDKYVVLVSGLNVG--SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+ ++ +D++VVL+SGL +G + + L QLLV+++TG LG + ++ A++IV
Sbjct: 224 SRTKHADASQDQWVVLMSGLAIGGEAALESQLSMQLLVEYLTGELGVDADRSNASKIVAA 283
Query: 228 VIAGNSIEIPRGLLNGQNLASKDQSR---LFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284
VIAGNS+ P + + Q + P LD LLT + + +P+ ++PG DPA
Sbjct: 284 VIAGNSLAPPTRIEEEEKPKRYGQDQPNYSSAPTLALDQLLTDLCSVMPVHLLPGERDPA 343
Query: 285 NFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND-- 342
+ ++PQQP++ L P S +++ TNP L + LGTSGQ IDD+ KY + +D
Sbjct: 344 SVAVPQQPIHFALLPRSGRFDSLHRHTNPAWISLGDRNLLGTSGQNIDDIFKYVDESDDA 403
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET---RLLKG 399
++E RTL W HLAPTAP+TL CYPF DPF++++ P V GNQ + + R
Sbjct: 404 RIEMALRTLEWGHLAPTAPDTLWCYPFKSTDPFVLKNRPDVLIVGNQPAYASAVYRFDSD 463
Query: 400 SDRQL--------VRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
D Q R+V +P+F++TG V +NL +LE + T F
Sbjct: 464 DDEQSQAPELQNGCRVVLVPEFAKTGQVVWLNLGSLETKLVCIETPF 510
>gi|302910988|ref|XP_003050394.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731331|gb|EEU44681.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 500
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 237/465 (50%), Gaps = 51/465 (10%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNW-------KPHLPICTVLELEEGRE 75
F + K+ QQY +YF RL ++ + + W + + VL++ +G
Sbjct: 36 FALDKQKSYQQQYGDMYFLRLTKIKPAVDQVAEAAWSGTSIGGETAQRVERVLDVRQGEL 95
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL 135
C + GT+Y M LKP+IL++ SK+R + + + DD ++LEDESGR++L G L
Sbjct: 96 CWVTGTVYMEMPLKPNILEDVSKDRWISAPISTPKYFSDDDQVMLEDESGRIRLVGDLLK 155
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE-LPLNSGEDKY------------ 182
VTG ++ + G E S GE V+DV LAPQ E L +G K
Sbjct: 156 SLHLVTGCIIGVMGTENSNGELEVIDVKFPDLAPQPERWSLTNGTGKKAKGEDEEMADAP 215
Query: 183 --------VVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
V +VSGL+ G+ S L+ LL++++ G Q + I ++IAGNS
Sbjct: 216 EGKKGNNKVAIVSGLSFSGTDASYALELDLLLEYLLGEALSPSSQADVSHISRLIIAGNS 275
Query: 234 IEI----PRGLLNGQNLASKDQSRLFE-------PIKELDILLTQIAAGVPLDIMPGPND 282
I P+ Q + ++ P + D L ++ +P+ ++PG D
Sbjct: 276 ISTTDQKPQAAEEAQPEKKAHKKYGYDSSAYNALPSQLFDAFLAELLPSIPVTMLPGDQD 335
Query: 283 PANFSLPQQPLNRCLFPGSATY----------NTFRSCTNPHCFELDNVRFLGTSGQTID 332
PAN S PQQP++ +FP S Y F + TNP E++ RFLGT GQ +D
Sbjct: 336 PANASYPQQPVHSAMFPNSRVYARDPSSPTKPGWFDTVTNPWEAEVEGWRFLGTGGQNVD 395
Query: 333 DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKF 392
D+ KY ++D+L ME RWR APTAP+TL YPF + DPF++++CPH+YFAG Q +F
Sbjct: 396 DVFKYVGSDDRLGMMEAMCRWRCCAPTAPDTLWSYPFQEDDPFVMKTCPHLYFAGCQPQF 455
Query: 393 ETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
T++ G D Q VRL+ +P FS T V+V+ + LE + +
Sbjct: 456 STKVAHGPDGQSVRLITVPSFSTTKEIVLVDTETLEVERVKISAK 500
>gi|389749277|gb|EIM90454.1| hypothetical protein STEHIDRAFT_154278 [Stereum hirsutum FP-91666
SS1]
Length = 519
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 161/468 (34%), Positives = 249/468 (53%), Gaps = 73/468 (15%)
Query: 34 QQYSQIYFARLHLMRALLYSLVP-NWK-----PHLPICTVLELEEGRECVIIGTLYKHMK 87
QY+ IYF RL L+R + W+ P L + VLE+ G+ C ++GT+Y M
Sbjct: 42 HQYANIYFIRLKLLREHVEREAERKWREVSGSPVL-VPRVLEVVRGQLCFVVGTVYMEMP 100
Query: 88 LKPSILDEYSKERSTTPLVKPHNFMH-PDDHLVLEDESGRVKLGGAELLPSAYVTGIVVA 146
LK ++L++ ++ S P P + ++ DDH+ LEDESGR++L G ++ VTG+++
Sbjct: 101 LKANVLEDVGRDHSI-PAPPPRDKIYSADDHVTLEDESGRIQLVGEKIERERLVTGVILG 159
Query: 147 LHGKETSAGEFLVLDVLDAGLAPQKELPLNSG-------------------EDKYVVLVS 187
G E + G+F V+DV AG+A Q P + +++YV VS
Sbjct: 160 ALGYENANGDFQVVDVCYAGMASQAAHPEHMDGMDVDDTPVVTDSSSKTVQQEEYVAFVS 219
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL++GS T + Q Q+LV+++TG G +Q A++I +VI GNS+ +N Q A
Sbjct: 220 GLDIGSPTPSDAQIQMLVEYLTGEAGGLDDQVSASQISRLVILGNSLS---DAVNAQIAA 276
Query: 248 S---KDQSRL----------FEPIKELDIL--LTQIAAGVPLDIMPGPNDPANFSLPQQP 292
KD+ + F P +++ L +A +P+ ++PG +DP+ LPQQP
Sbjct: 277 EDSPKDKDKKGKRYGYDNASFSPHPTINLSGHLHDLARTLPIHLLPGASDPSGTILPQQP 336
Query: 293 LNRCLFPGSATYNTFRSCTNPHCFEL--------DNV----------------RFLGTSG 328
L R +F +A +++F TNP L +N+ L TSG
Sbjct: 337 LPRMMFGPAAAFSSFTCETNPTYIRLSPGKPQEQENIPPSAPSPAKKSDSWARTILATSG 396
Query: 329 QTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
Q +DD+ KY S +L E TLRWRH+APTAP+TL C+PF +DPF++ P VY
Sbjct: 397 QPLDDMFKYVPSPPATRLGLAESTLRWRHMAPTAPDTLWCHPFFTKDPFILSQTPDVYAI 456
Query: 387 GNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
G Q KF T+L+K +R+ R+V +P F+ETGV V+V ++ L+ + F
Sbjct: 457 GCQPKFSTKLVKDDERR-CRIVLVPNFAETGVLVLVGMRRLDAKIVKF 503
>gi|358389752|gb|EHK27344.1| hypothetical protein TRIVIDRAFT_73251 [Trichoderma virens Gv29-8]
Length = 503
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 249/473 (52%), Gaps = 62/473 (13%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKP-------HLPICTVLELEEGRE 75
F + K+ QQY +YF RL ++ + + W+ + VL++ +G
Sbjct: 34 FALDKQRSYKQQYGDMYFLRLAKIKPAVEEVASKAWEGTEIGGELAKRVDRVLDVRQGEL 93
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAE 133
C + GT+Y MKLKP+IL++ SK++ + + + D D ++LED+SGRV+L G
Sbjct: 94 CWVAGTVYMDMKLKPNILEDVSKDQWLSAPMSSQKYYSDDGSDQIMLEDDSGRVRLVGDL 153
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE------LPLNSGEDKY----- 182
L VTG +VA+ G E + GEF V+D+ LAPQ E P SG+ K
Sbjct: 154 LNSIPLVTGCIVAVMGTENTNGEFEVIDLKVPDLAPQPERWAVSKTPSASGKSKSEDTDM 213
Query: 183 -----------VVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIA 230
+ +VSGL+ G+ S L+ LL++++ G D EQ ++I ++IA
Sbjct: 214 TDSPSLTGGKKIAIVSGLSFSGTDASYDLELNLLLEYLLGEALDPDEQTNISQISRLIIA 273
Query: 231 GNSIEIPRGLLNGQNLASKDQSR------------LFEPIKE--LDILLTQIAAGVPLDI 276
G+SI N +N D+S+ + P+ D ++++ +P+ +
Sbjct: 274 GDSIST---TANKENDDEDDESKKRSQKKYGYDASAYNPLPSQLFDEFVSELLPSIPVTL 330
Query: 277 MPGPNDPANFSLPQQPLNRCLFPGSATYNT------------FRSCTNPHCFELDNVRFL 324
+PG DPAN S PQQP++ +FP S Y + + TNP E++ R L
Sbjct: 331 LPGAQDPANASYPQQPIHTAMFPLSRAYASDPGAASTSQPGWLDTVTNPWEAEVEGWRIL 390
Query: 325 GTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVY 384
GT GQ +DD+ KY E++D+L ME RWR APTAP+TL YPF + DPF+++SCPHVY
Sbjct: 391 GTGGQNVDDVFKYVESDDRLGMMEAMCRWRCCAPTAPDTLWSYPFQEDDPFVLKSCPHVY 450
Query: 385 FAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
F G Q +F T+++ G + Q VRL+ +P FS+T V+++ + LE + ++
Sbjct: 451 FVGCQPEFATKVIHGPEDQAVRLIAVPSFSKTKEFVLMDTETLEVTKIKIASR 503
>gi|443894116|dbj|GAC71466.1| mitochondrial polypeptide chain release factor [Pseudozyma
antarctica T-34]
Length = 500
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 225/397 (56%), Gaps = 33/397 (8%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESG 125
+L++ G C ++G +Y M LKP +L++ ++E+ P V+ + D L +ED+SG
Sbjct: 104 ILDVRHGDICYVVGNIYCAMPLKPDVLEDLTREQWLAPQPVRAKYVDYEKDELFIEDQSG 163
Query: 126 RVKLGGAEL-----LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL------APQKELP 174
RVKL G + L S +TG+V A+ G ET G F V+D + A L AP
Sbjct: 164 RVKLVGDAIRSGGPLRSMLITGVVAAVLGTETRTGNFDVVDAVFASLPVLQPAAPISHKK 223
Query: 175 LNSGEDKYVVLVSGLNVG--SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
+G+D++VVL+SG+ +G S + L QLLV+++TG LGD+ ++ ++ +V +IAGN
Sbjct: 224 AAAGDDQWVVLMSGMAIGGESALESELAMQLLVEYLTGELGDDADRASSSRVVAAIIAGN 283
Query: 233 SIEIP-------RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
S+ P R GQ + + P LD LL+ + + +P+ ++PG DPA+
Sbjct: 284 SLAPPTRSEDEDRPKRYGQEQPTFSSA----PTLALDQLLSDLCSAMPVHLLPGERDPAS 339
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--Q 343
++PQQP++ L P + +++ TNP L N++ LGTSGQ IDD+ KY + D +
Sbjct: 340 VAIPQQPIHFALLPRAGRFDSLHRHTNPAWLSLGNLKLLGTSGQNIDDIFKYVDEPDSAR 399
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLL----KG 399
++ RTL W HLAPTAP+TL CYPF DPF+++ P V F GNQ + + +
Sbjct: 400 IDMALRTLEWGHLAPTAPDTLWCYPFKSTDPFVLKDRPDVLFVGNQPSYASAMYTFDPDA 459
Query: 400 SDR--QLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
D+ Q R+V +P+F+ T V++NL +L+ ++
Sbjct: 460 DDKAQQGCRVVLVPEFARTRQVVLLNLASLDTKLVTI 496
>gi|392867633|gb|EAS29117.2| DNA polymerase delta subunit 2 [Coccidioides immitis RS]
Length = 559
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 161/497 (32%), Positives = 241/497 (48%), Gaps = 92/497 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ + + I VL++ +G C ++GT+Y
Sbjct: 48 QQYADIYFLRLARLKPAVAEIAAAEWEEFTIAGENARRVDRVLDVRQGELCWVVGTVYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ P + +LED SGR++L G L + VT
Sbjct: 108 LPLKPNILDDISKEHWTAAPPSRKTYLDPSNQGGTQTMLEDGSGRLRLTGTLLQSALLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQ--------------------KELPLNSGEDK 181
G VVA+ G E + G+F V+DV LAPQ E P++ G K
Sbjct: 168 GAVVAVLGTENANGDFEVVDVKVPDLAPQPARWESQYADSASGKRKRSPSETPVD-GPRK 226
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGH------LGDEKEQGIAAEIVHVVIAGNSI- 234
+ L+SGL + + + + LL D++ G+ +G +A+I ++IAGNS+
Sbjct: 227 KIALLSGLGITGTSGDTVALTLLTDYLLGYGEGYGNVGTGSSPIRSAQISRLIIAGNSLG 286
Query: 235 -EIPRGLLNGQNLASKDQSRLFE------------PIKELDILLTQIAAGVPLDIMPGPN 281
+P L A+ + R + PI LD L +I +P+ IMPG N
Sbjct: 287 SSVPPSLEEQDEDAAVKKRRQAKKYGYDASAYNASPITHLDNFLAEILPSIPVTIMPGEN 346
Query: 282 DPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDNVRFLGT 326
DPANF+LPQQ ++R + P S Y + + TNP +++ R G
Sbjct: 347 DPANFALPQQEIHRAMLPRSRNYCSAPRLGIDEPPSEPGWLDTVTNPWQGDVEGWRLWGC 406
Query: 327 SGQTIDDLQKYS-------------EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
SGQ +DD+ +Y E + +L ME LRWR PTAP+T+ CYPF D D
Sbjct: 407 SGQNVDDVLRYMYLDDDQTGNGQDIEGDTRLRLMEAMLRWRCAVPTAPDTIWCYPFQDND 466
Query: 374 PFLVESCPHVYFAGNQQKFETRL-----------LKGSDRQLVRLVCIPKFSETGVAVVV 422
PF++++CPHV+F GNQ F T + ++G VRL+ +PKF ETG V++
Sbjct: 467 PFVLQACPHVFFTGNQPAFRTTVIEKSVSASSMDIEGDQPSKVRLLALPKFRETGELVLL 526
Query: 423 NLKNLECHTLSFGTQFS 439
+ + LE + FGT S
Sbjct: 527 DAETLEVEVVKFGTWQS 543
>gi|346327140|gb|EGX96736.1| DNA polymerase delta subunit 2 [Cordyceps militaris CM01]
Length = 513
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 242/489 (49%), Gaps = 65/489 (13%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHL-------P 63
R +++Y L F + K+ QQY +YF RL ++ ++ + W
Sbjct: 25 RDESSYKPL-ATFALDKQRSYKQQYGDMYFLRLTKIKPVVEQVAAAAWAGTTIGGETAGK 83
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLE 121
+ VL++ +G C + GT+Y M LKP+IL++ SK+R + + + D D + LE
Sbjct: 84 VDRVLDVRQGELCWVAGTVYMDMALKPNILEDVSKDRWLSAPISTQKYYSDDGTDQVTLE 143
Query: 122 DESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ----------- 170
D+SGRV+L G L VTG ++A+ G E ++GEF VLD+ L PQ
Sbjct: 144 DDSGRVRLVGDVLKTVPLVTGCIIAVMGTENTSGEFEVLDLKFPDLPPQPARWALGTADG 203
Query: 171 ------KELPLNSG-------EDKYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEK 216
E+ + G K + +VSGL+ G+ S ++ LL++++ G
Sbjct: 204 THKQQDTEMTDSGGGSDAPSTNHKQIAIVSGLSFSGADASCAVEVDLLLEYLLGESLSPD 263
Query: 217 EQGIAAEIVHVVIAGNSIEIPR-----------------GLLNGQNLASKDQSRLFEPIK 259
Q A+ I +IAG+SI G + + + P +
Sbjct: 264 AQSQASRISRFIIAGDSISAAAAAAPDDDNDDTKAAAAAGPSSSKKYGYDASTYNALPSQ 323
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT------------F 307
D ++ + +P+ ++PG DPAN S PQQPL+ LFP + + F
Sbjct: 324 LFDEFVSALLPSLPVTLLPGARDPANASYPQQPLHTALFPSARAFGADPSAGAAAAPGWF 383
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
S TNP E++ R LGT GQ +DD+ KY +++D+L ME RWR APTAP+TL Y
Sbjct: 384 DSVTNPWEAEVEGWRVLGTGGQNVDDVFKYVDSDDRLGMMEAMCRWRCCAPTAPDTLWSY 443
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
PF D DPF++ +CPH+YF GNQ F TRL+ G D Q VRLV +P F+ + V+V+++ L
Sbjct: 444 PFQDDDPFVLNACPHLYFVGNQPAFGTRLIHGPDGQSVRLVAVPSFAVSKEIVLVDMETL 503
Query: 428 ECHTLSFGT 436
+ + T
Sbjct: 504 DVTKVKIET 512
>gi|290981052|ref|XP_002673245.1| predicted protein [Naegleria gruberi]
gi|284086827|gb|EFC40501.1| predicted protein [Naegleria gruberi]
Length = 397
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 227/388 (58%), Gaps = 19/388 (4%)
Query: 66 TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS--TTPLVKPHNFMHPDDHLVLEDE 123
++L+L G E + GTLYK MKLKP+IL E++ E++ + NF+ D+L+LED
Sbjct: 10 SMLDLTMGVEYTVAGTLYKEMKLKPNILREFTTEKNFEAEKVELLDNFVSDSDYLILEDL 69
Query: 124 SGR-----VKLGGAE---LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL 175
+G + +E L+ S VTGI+ L+G+ S+G F+ D++ PQ+ + +
Sbjct: 70 NGSRCNVVFESKNSEKNRLMTSQLVTGIIAGLYGQIDSSGTFIAKDIVFNDPPPQRSITV 129
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEK-EQGIAAEIVHVVIAGNSI 234
+D Y+ ++SG+ VG + + Q+ D I G G +AA+I V+IAGN +
Sbjct: 130 -PQKDAYLAVISGVCVGHPKYDVVATQMAFDFINGLAGSGAFVNDVAAKISRVIIAGNGV 188
Query: 235 -----EIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
E R + G +L K+ S + +K D L+ Q+ V +D+MPGPNDP+N ++P
Sbjct: 189 IAAEDEGKRFDVRG-SLRPKELSSIAGHMKSFDGLVEQLVNTVDVDVMPGPNDPSNVTIP 247
Query: 290 QQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMER 349
QQP++ + S+ ++T R TNPH + + + TSGQT+ +++KYS + +LE M+
Sbjct: 248 QQPIHPFMLQRSSPFSTCRLVTNPHLIQENGLDVFVTSGQTVAEIEKYSTYSSRLEVMKN 307
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC 409
L+W H AP+AP+T+ CYPF D DPF+++ PH+ GN KFET L+ + + RLVC
Sbjct: 308 LLQWGHYAPSAPDTMRCYPFKDTDPFIMKHTPHIMICGNCPKFETTLVTVKETK-SRLVC 366
Query: 410 IPKFSETGVAVVVNLKNLECHTLSFGTQ 437
+P+F V++NLK L+C ++F T+
Sbjct: 367 VPEFVSCPTIVLINLKTLDCVPINFSTE 394
>gi|403416179|emb|CCM02879.1| predicted protein [Fibroporia radiculosa]
Length = 556
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 166/508 (32%), Positives = 246/508 (48%), Gaps = 106/508 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-WK-----PHLPICTVLELEEGRECVIIGTLYKHMK 87
QY+ IYF RL L+R + + W+ P + VL++E+G C IIGT+Y M
Sbjct: 42 HQYASIYFVRLQLLRKFVLARARRRWRGLSGNPVF-VPRVLDVEKGNLCYIIGTVYLDMP 100
Query: 88 LKPSILDEYSKERS-TTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVA 146
LKP++L++ +++ S P +P + DD + LEDESGR+ L GA L + VTG+V+
Sbjct: 101 LKPNVLEDLARDHSLPAPAPRP-KYHSEDDQVTLEDESGRIVLVGAPLRAAQLVTGVVLG 159
Query: 147 LHGKETSAGEFLVLDVLDAGLAPQKELPLN---SGE-----------------------D 180
+ G ET+ GEF V+DV AG+APQ + ++ SG D
Sbjct: 160 VLGAETNGGEFEVIDVCYAGMAPQPDSDVSWEQSGATGAADAMDVDGAPRQIQIEGQETD 219
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE-IPRG 239
+++ LVSGL +G+ + Q Q++V+++ G G +Q +A I ++IAGNS+ I
Sbjct: 220 EWIALVSGLEIGASSPADAQIQMMVEYLAGEAGGLYDQVTSARISRLIIAGNSLAPIVNT 279
Query: 240 LLNGQNLASKDQSRL------FEPIKELDI--LLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
N + A + R F P L + L IA +P+ I+PG +DPA LPQQ
Sbjct: 280 NTNEEERAERKARRYGHDTANFSPQPSLILSEYLHDIARAMPVHILPGASDPAGTLLPQQ 339
Query: 292 PLNRCLFPGSATYNTFRSCTNPHCFELDNVRF---------------------------- 323
P R +F G++ +++F TNP L F
Sbjct: 340 PFPRAMFRGASAFSSFSCETNPTYIHLGPSAFDALQETSPQNTKGKKASTSAFASGVPSA 399
Query: 324 ----------LGTSGQTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTD 371
L +SGQ +DD+ KY S +L TLRWRHLAPTAP+TL C+P+
Sbjct: 400 SGSCTPSRTLLVSSGQPVDDMFKYLSSPPATRLSIATSTLRWRHLAPTAPDTLWCHPYFG 459
Query: 372 RDPFLVESCPHVYFAGNQQKFETRLLK----GSDRQLV------------------RLVC 409
DPF + P VY GNQ F TR++ G+D V R+V
Sbjct: 460 ADPFAIRETPDVYVVGNQPGFGTRVVTERGWGTDSDAVSDEVEEEGLEGEGRDKRCRVVL 519
Query: 410 IPKFSETGVAVVVNLKNLECHTLSFGTQ 437
+P F ETG+ V++N++ L T+ F +
Sbjct: 520 VPGFRETGILVLLNMRTLAVRTVQFAVE 547
>gi|239611589|gb|EEQ88576.1| DNA polymerase delta subunit 2 [Ajellomyces dermatitidis ER-3]
Length = 563
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 167/504 (33%), Positives = 244/504 (48%), Gaps = 103/504 (20%)
Query: 34 QQYSQIYFARLHLMR-ALLYSLVPNWKP-------HLPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ A+ V +W+ + VL++ +G C + GT+Y
Sbjct: 6 QQYADIYFLRLARLKPAVTEIAVASWEGFNIAGEYARRVDRVLDVRQGELCWVAGTIYMD 65
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ + +LEDESGR++L G L S VT
Sbjct: 66 LPLKPNILDDISKEHWTAAPPSRKTYVDSSNQSLTKTMLEDESGRLQLTGTLLQSSLLVT 125
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS----------------------GE 179
G +VA+ G E + G+F V+D+ L PQ E S G+
Sbjct: 126 GAIVAVLGTENANGDFEVIDIKVPDLPPQPERWERSSAHQEPTKRKRSSLEESSDGTEGK 185
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITG--------HLGDEKEQGIAAEIVHVVIAG 231
K + LVSGL + + + L LL D++ G H G+ +++I ++IAG
Sbjct: 186 RKRIALVSGLGITGTSGDTLALSLLTDYLLGYNEPPIQTHNGNNPPS--SSQITRLIIAG 243
Query: 232 NSIE----IPRGLLNGQN--LASKDQSRL----------FEPIKELDILLTQIAAGVPLD 275
NS+ IP + LA K + PI D L +I +P+
Sbjct: 244 NSLGGSMIIPHSEAEKADPALAKKRHAPKKYGYDATAYNASPINHFDSFLAEILPSIPVT 303
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDN 320
+MPG DPANFSLPQQ ++R +FP S Y + + TNP E++
Sbjct: 304 LMPGETDPANFSLPQQEIHRAMFPRSKAYCSAARPGAAEQAADPGWLDNVTNPWEGEVEG 363
Query: 321 VRFLGTSGQTIDDLQKY------------SEAND----QLEFMERTLRWRHLAPTAPNTL 364
RF G SGQ +DD+ +Y SE++ +L+ ME LRWR PTAP+TL
Sbjct: 364 WRFWGCSGQNVDDVLRYIDLEAEGDIIQGSESDKDGEARLQLMETMLRWRCAVPTAPDTL 423
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL------------VRLVCIPK 412
CYP+ DPF +++CPHV+FAGNQ F T +++GS L VR++ +PK
Sbjct: 424 WCYPYQSHDPFTLQACPHVFFAGNQPSFRTGIVEGSAAALSSSDNGEEQSTRVRVIALPK 483
Query: 413 FSETGVAVVVNLKNLECHTLSFGT 436
FSETG V+V+ + LE + F T
Sbjct: 484 FSETGEIVLVDAETLEVEVVKFAT 507
>gi|396458314|ref|XP_003833770.1| similar to DNA polymerase subunit delta-2 [Leptosphaeria maculans
JN3]
gi|312210318|emb|CBX90405.1| similar to DNA polymerase subunit delta-2 [Leptosphaeria maculans
JN3]
Length = 522
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 246/459 (53%), Gaps = 48/459 (10%)
Query: 24 FEIQKET--YRGQQYSQIYFARL-HLMRALLYSLVPNW-------KPHLPICTVLELEEG 73
F++ K T + GQQ++ +YF RL L + ++ W + I VL++ +G
Sbjct: 59 FDLPKGTDKHYGQQFADMYFLRLAQLKKCVMQKAEEAWSDFELGGEKATFIERVLDVRQG 118
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGG 131
C I+GT+Y M LKP++LD+ SKE ++ P+ D ++LEDESGR+++ G
Sbjct: 119 ELCWIVGTVYMEMALKPNVLDDISKEHWIAAPPPRETYVSPNGQDEMMLEDESGRLRVTG 178
Query: 132 AELLPSAYVTGIVVALHGKETSAGEFLVLDVL--------------DAGLAPQKELPLNS 177
E L S YVTG ++A G E + G F V+ D+ L+ +
Sbjct: 179 -ESLNSHYVTGCILAALGTEQADGTFQVIATQYADLPRQPERWERDDSALSRANKPKAKR 237
Query: 178 GEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP 237
G + +VSGL + + L LL++++TG Q A++I ++IAG+S+
Sbjct: 238 GRSGKIAIVSGLEITGQDDDDLSLDLLLEYLTGEATGPPMQATASQITRLIIAGDSLSHA 297
Query: 238 RGLLNGQNLA-SKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFS 287
+ + ++ A K +S+ + P + LD L ++ +P+ ++PG +DPAN +
Sbjct: 298 SPIPSREDFALKKSKSKNYGYDASSYNASPTERLDTFLAELLPTLPITLLPGASDPANVA 357
Query: 288 LPQQPLNRCLFPGSATY-----------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336
LPQQ L+ L P S Y + + TNP ++D RFLGT+GQT+ DL K
Sbjct: 358 LPQQTLHTALLPKSRLYANPPAQTNETLHGLDTVTNPWSADIDGYRFLGTAGQTVADLLK 417
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL 396
Y + LE ME LRWR +APTAP+TL CYPF D DP L++ CPHVYFAG Q + ++L
Sbjct: 418 YVDDVQPLEAMEMMLRWRCVAPTAPDTLWCYPFQDDDPMLLKDCPHVYFAGCQNRAASKL 477
Query: 397 LKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
++G Q V LV +P+F ETG VV+++++ E + G
Sbjct: 478 VEGPAGQRVLLVTVPRFRETGQLVVLDMESWEVEVVEIG 516
>gi|261204916|ref|XP_002627195.1| DNA polymerase delta subunit 2 [Ajellomyces dermatitidis SLH14081]
gi|239592254|gb|EEQ74835.1| DNA polymerase delta subunit 2 [Ajellomyces dermatitidis SLH14081]
gi|327348397|gb|EGE77254.1| DNA polymerase delta subunit 2 [Ajellomyces dermatitidis ATCC
18188]
Length = 566
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 166/504 (32%), Positives = 244/504 (48%), Gaps = 103/504 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKP-------HLPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ + + V +W+ + VL++ +G C + GT+Y
Sbjct: 48 QQYADIYFLRLARLKPAVTEIAVASWEGFNIAGEYARRVDRVLDVRQGELCWVAGTIYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ + +LEDESGR++L G L S VT
Sbjct: 108 LPLKPNILDDISKEHWTAAPPSRKTYVDSSNQSLTKTMLEDESGRLQLTGTLLQSSLLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS----------------------GE 179
G +VA+ G E + G+F V+D+ L PQ E S G+
Sbjct: 168 GAIVAVLGTENANGDFEVIDIKVPDLPPQPERWERSSAHQEPTKRKRSSLEESSDGTEGK 227
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITG--------HLGDEKEQGIAAEIVHVVIAG 231
K + LVSGL + + + L LL D++ G H G+ +++I ++IAG
Sbjct: 228 RKRIALVSGLGITGTSGDTLALSLLTDYLLGYNEPPIQTHNGNNPPS--SSQITRLIIAG 285
Query: 232 NSIE----IPRGLLNGQN--LASKDQSRL----------FEPIKELDILLTQIAAGVPLD 275
NS+ IP + LA K + PI D L +I +P+
Sbjct: 286 NSLGGSMIIPHSEAEKADPALAKKRHAPKKYGYDATAYNASPINHFDSFLAEILPSIPVT 345
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDN 320
+MPG DPANFSLPQQ ++R +FP S Y + + TNP E++
Sbjct: 346 LMPGETDPANFSLPQQEIHRAMFPRSKAYCSAARPGAAEQAADPGWLDNVTNPWEGEVEG 405
Query: 321 VRFLGTSGQTIDDLQKY------------SEAND----QLEFMERTLRWRHLAPTAPNTL 364
RF G SGQ +DD+ +Y SE++ +L+ ME LRWR PTAP+TL
Sbjct: 406 WRFWGCSGQNVDDVLRYIDLEAEGDIIQGSESDKDGEARLQLMETMLRWRCAVPTAPDTL 465
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL------------VRLVCIPK 412
CYP+ DPF +++CPHV+FAGNQ F T +++GS L VR++ +PK
Sbjct: 466 WCYPYQSHDPFTLQACPHVFFAGNQPSFRTGIVEGSAAALSSSDNGEEQSTRVRVIALPK 525
Query: 413 FSETGVAVVVNLKNLECHTLSFGT 436
FSETG V+V+ + LE + F T
Sbjct: 526 FSETGEIVLVDAETLEVEVVKFAT 549
>gi|121706972|ref|XP_001271691.1| DNA polymerase delta subunit 2, putative [Aspergillus clavatus NRRL
1]
gi|119399839|gb|EAW10265.1| DNA polymerase delta subunit 2, putative [Aspergillus clavatus NRRL
1]
Length = 540
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 243/488 (49%), Gaps = 86/488 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKH 85
QQY +YF RL ++ ++ ++ I VL++ +G C + GT+Y
Sbjct: 44 QQYGDMYFLRLAKLKPVVEAVGTEAWEGFSIAGEHAHRVERVLDVRQGELCWVAGTVYMD 103
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFM---HPD-DHLVLEDESGRVKLGGAELLPSAYVT 141
M LKP+ILD+ SKE ++ HP+ ++LEDESGR++L G L + T
Sbjct: 104 MPLKPNILDDLSKENHIIAPPPRRTYIDPAHPELTQIMLEDESGRLRLTGNLLRSTQLAT 163
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQ-----KELPLNSGEDKY---VVLVSGLNVGS 193
G ++A+ G E + G+F +D+ LAPQ ++ +SG+ + VSGL +
Sbjct: 164 GAIIAVLGTENANGDFETIDIRVPDLAPQPRRWERDEAQSSGKRSSKGKIAFVSGLGITG 223
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGI-----AAEIVHVVIAGNSI-------EIPRGLL 241
+S+ L LL D++ G+ G E A+ I ++IAGNS+ G
Sbjct: 224 TSSDALALDLLTDYLLGYTGSTGESSDGSAPNASTITRLIIAGNSLGASVTAEAASAGTE 283
Query: 242 NGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
+G K + + PI +LD L +I +P+ +MPG +DPANF+LPQQ
Sbjct: 284 SGAVSKKKSGPKKYGYDASAYNASPITQLDNFLAEILPSIPVTLMPGDSDPANFALPQQG 343
Query: 293 LNRCLFPGSATY-------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-- 337
++R +FP S Y F S TNP +++ R G+SGQ +DD+ +Y
Sbjct: 344 IHRAMFPRSRAYCAAPPSKDETPEPGWFDSVTNPWEGDVEGWRLWGSSGQNVDDVLRYLD 403
Query: 338 ------------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYF 385
+ ++ ME LRWR PTAP+T+ YPF DPF+++SCPH++F
Sbjct: 404 FADGDADQDAGDGDIEARMRIMEAMLRWRCGVPTAPDTIWSYPFQTSDPFVIQSCPHIFF 463
Query: 386 AGNQQKFETRLLK--------GSDRQL----------VRLVCIPKFSETGVAVVVNLKNL 427
AGNQ +F T LL+ G+D ++ VRL+ IPKF ETG ++++ ++L
Sbjct: 464 AGNQPRFRTALLEGDLPLKLNGTDTEMSDAPGDAGPRVRLLSIPKFKETGELILIDTESL 523
Query: 428 ECHTLSFG 435
E + FG
Sbjct: 524 EVEVVKFG 531
>gi|225562395|gb|EEH10674.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 565
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/503 (32%), Positives = 243/503 (48%), Gaps = 102/503 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ + + V W+ + VL++ +G C + GT+Y
Sbjct: 48 QQYADIYFLRLARLKPTVSEIAVAAWEGFNIAGEYAKRVDRVLDVRQGELCWVAGTIYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ P + +LEDESGR++L G L S VT
Sbjct: 108 LPLKPNILDDISKEHWTAAPPVRRTYVDPSNQALTKTMLEDESGRLQLTGTLLQSSLLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKE------LPLNS----------------GE 179
G +VA+ G E + G+F V+D+ L PQ E +P S G
Sbjct: 168 GAIVAVLGTENANGDFEVIDIKVPDLPPQPERWERSSVPQESAKRKHSSLEASSDSIEGR 227
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH------LGDEKEQGIAAEIVHVVIAGNS 233
K + LVSGLN+ + + + LL +++ G+ + +++I ++IAGNS
Sbjct: 228 RKKIALVSGLNITGTSGDTVALSLLTEYLLGYNEFPTQTHNNNTPSSSSQITRLIIAGNS 287
Query: 234 IEIPRGLLNGQNLASKDQSRLFE------------------PIKELDILLTQIAAGVPLD 275
+ ++ Q+ A L + PI D L +I +P+
Sbjct: 288 LG--SSMIISQSEAENADPALAKKRHAPKKYGYDATAYNASPINHFDTFLAEILPSIPIT 345
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDN 320
+MPG DPANFSLPQQ ++R +FP S Y + + TNP +++
Sbjct: 346 LMPGETDPANFSLPQQEIHRAMFPRSKAYCSAARPGAAEPAAEPGWLDNVTNPWEGDVEG 405
Query: 321 VRFLGTSGQTIDDLQKY------------SEAND----QLEFMERTLRWRHLAPTAPNTL 364
RF G SGQ +DD+ +Y SE++ +L ME LRWR PTAP+TL
Sbjct: 406 WRFWGCSGQNVDDVLRYIDLEVEGDTLQGSESDKDGEARLRLMEAMLRWRCAVPTAPDTL 465
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR-----------QLVRLVCIPKF 413
CYP+ DPF ++SCPHV+FAGNQ F T +++ S VR++ +PKF
Sbjct: 466 WCYPYQTHDPFTLQSCPHVFFAGNQPSFRTGIVEASTTLSSEDNGEEQGTRVRVIALPKF 525
Query: 414 SETGVAVVVNLKNLECHTLSFGT 436
S+TG V+V+ + LE + FGT
Sbjct: 526 SQTGEIVLVDAETLEVEVVKFGT 548
>gi|212537697|ref|XP_002149004.1| DNA polymerase delta subunit 2, putative [Talaromyces marneffei
ATCC 18224]
gi|210068746|gb|EEA22837.1| DNA polymerase delta subunit 2, putative [Talaromyces marneffei
ATCC 18224]
Length = 544
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 253/523 (48%), Gaps = 97/523 (18%)
Query: 5 GEEARLQRKQATYIFLDEPFEIQKETYRG--QQYSQIYFARLHLM--------RALLYSL 54
GEE + + + + F++ K R QQYS +YF RL + R
Sbjct: 16 GEEYQPEYRAPSAYTPLHAFQLPKADSRQYQQQYSDLYFLRLAKLKPAAEKVGREAWDGF 75
Query: 55 VPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHP 114
+ + VL++ +G C + GT+Y ++ LKP+ILD+ +K+ ++ P
Sbjct: 76 TIAGEKARKVDRVLDVRQGALCWVTGTVYMNLPLKPNILDDVAKDNYAAAPPPRKTYLDP 135
Query: 115 DD----HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ 170
+ ++LEDESGR+++ G+ L + VTG+++A+ G E S G+F V+D+ PQ
Sbjct: 136 SNPDQTQVMLEDESGRLRMTGSMLRTTHLVTGVIIAVLGTENSNGDFEVIDIKVPDFPPQ 195
Query: 171 ----------------KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGD 214
K + NSG+ + VSGL + +S+ L +LL D++ G+
Sbjct: 196 PSRWEKAPTDKTESKIKRIDNNSGKSSKIAFVSGLGITGSSSDTLTLELLTDYLLGYTET 255
Query: 215 EKEQGIAAEIVHVVIAGNSI------------------EIPRGLLNGQNLASKDQSRLFE 256
+E A I ++IAGNS+ + G + +S + S
Sbjct: 256 GEEDNSPANISRLIIAGNSLGNVETMDAAAAMNGDAAAKKRAPKKYGYDASSYNAS---- 311
Query: 257 PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------- 306
P+ +LD L+++ +P+ IMPG DPANFSLPQQ ++R + P + TY +
Sbjct: 312 PVTQLDNFLSELLPSIPVTIMPGETDPANFSLPQQGIHRAMLPRAKTYCSDGLPGDTSVE 371
Query: 307 ---FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ-------------LEFMERT 350
F + TNP +D R G SGQ +DD+ +Y + D+ ++ ME
Sbjct: 372 PGWFDNVTNPWEGYVDGWRLWGCSGQNVDDVLRYLDFADENGNTDGDSARETSVQVMEAM 431
Query: 351 LRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL--------LKGSDR 402
LRWR PTAP+TL CYPF DPF++++CPH++F GNQ F+T + L G D
Sbjct: 432 LRWRCAVPTAPDTLWCYPFQTHDPFILQACPHLFFIGNQPHFKTVVVESEPPFRLDGPDT 491
Query: 403 QL-----------VRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
++ VRLV IPKF ETG ++V+ + LE + F
Sbjct: 492 EMSNSADEPLATRVRLVSIPKFHETGELILVDSETLEVEVVKF 534
>gi|242808483|ref|XP_002485173.1| DNA polymerase delta subunit 2, putative [Talaromyces stipitatus
ATCC 10500]
gi|218715798|gb|EED15220.1| DNA polymerase delta subunit 2, putative [Talaromyces stipitatus
ATCC 10500]
Length = 493
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 229/448 (51%), Gaps = 80/448 (17%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTT---PLVKPHNFMHPDD-HLVLED 122
VL++ +G C + GT+Y + LKP+ILD+ +K+ P + ++PD ++LED
Sbjct: 36 VLDVRQGALCWVTGTVYMDLPLKPNILDDVAKDNYAAAPPPRTTYIDPLNPDKTQVMLED 95
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDV----------------LDAG 166
ESGR+++ G L + VTG+++A+ G E S G+F V+D+ D
Sbjct: 96 ESGRLRMTGTMLRTTHLVTGVIIAVLGTENSNGDFEVIDIKVPDFPVQPPRWELASTDKT 155
Query: 167 LAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVH 226
+ K + +G+ + +SGL + +S+ L +LL D++ G+ G E A I
Sbjct: 156 ESTIKRVENTTGKSSKIAFISGLGITGSSSDTLALELLTDYLLGYTGPGGEDESPARISR 215
Query: 227 VVIAGNSI-----EIPRGLLNGQNLASKDQSRLF---------EPIKELDILLTQIAAGV 272
++IAGNS+ +NG A K + + PI +LD L+++ +
Sbjct: 216 LIIAGNSLGNLETATAAAAMNGDGTAKKKVPKKYGYDASSYNASPITQLDNFLSELLPSL 275
Query: 273 PLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT-------------FRSCTNPHCFELD 319
P+ +MPG NDPANFSLPQQ ++R + P + Y++ F + TNP +D
Sbjct: 276 PVTLMPGENDPANFSLPQQGIHRAMLPRAKAYSSDGLPGDTSVEPGWFDNVTNPWEGYVD 335
Query: 320 NVRFLGTSGQTIDDLQKYSEANDQ--------------LEFMERTLRWRHLAPTAPNTLG 365
RF G SGQ +DD+ +Y + D+ ++ ME LRWR PTAP+TL
Sbjct: 336 GWRFWGCSGQNVDDVLRYLDFADEDGNATNSDGDGETSVQIMEAMLRWRCAVPTAPDTLW 395
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRL--------LKGSDRQL-----------VR 406
CYPF DPF++++CPH++F GNQ F+T + L G D ++ VR
Sbjct: 396 CYPFQTHDPFILQACPHLFFIGNQSHFKTVVVVSEPAFRLDGPDTEMSNSADEPLATHVR 455
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSF 434
LV IPKF ETG ++V+ + LE + F
Sbjct: 456 LVSIPKFHETGELILVDSETLEVDVVKF 483
>gi|395333295|gb|EJF65672.1| hypothetical protein DICSQDRAFT_165382 [Dichomitus squalens
LYAD-421 SS1]
Length = 520
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 163/484 (33%), Positives = 250/484 (51%), Gaps = 84/484 (17%)
Query: 29 ETYRGQQYSQIYFARLHLMRALL-------YSLVPNWKPHLPICTVLELEEGRECVIIGT 81
++YR QYS IYF RL +R + +S V +P VL++E+G+ C +IGT
Sbjct: 37 KSYR-HQYSNIYFVRLRALRQHVEQQAQRKWSGVAGNPVFVP--RVLDVEKGKLCFVIGT 93
Query: 82 LYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD-DHLVLEDESGRVKLGGAELLPSAYV 140
+Y M LKP++L++ +++RS P P + D D + LEDESGR+ L G+ + + V
Sbjct: 94 VYMEMPLKPNVLEDIARDRSI-PAPPPREKYYSDSDSVTLEDESGRICLVGSRVTSTCLV 152
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN------SGE------------DKY 182
TG+++ G ET G+F V+D+ G+APQ L S E D+
Sbjct: 153 TGVILGALGIETHTGDFEVVDLCYPGMAPQPTAGLEWPSWKVSDEIMDVDGTAPQVSDEC 212
Query: 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLN 242
+ LVSGL +GS + Q QLL +++TG G EQ ++ I ++IAGNS ++
Sbjct: 213 IALVSGLEIGSLDAADGQLQLLAEYLTGEAGGLGEQSQSSCISRLIIAGNSF----APID 268
Query: 243 GQNLASKDQSRLF--------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
S+ +SR + P + L LT I + + ++PGP DPA LPQQP+
Sbjct: 269 TSKGESERRSRKYGQEVPFSPHPTQALSAYLTDICRSLSVHLLPGPLDPAATILPQQPIP 328
Query: 295 RCLFPGSATYNTFRSCTNP-----------------------------HCFELDNVR-FL 324
R +F G++ Y F S +NP H ++D VR L
Sbjct: 329 RAMFGGASHYANFSSESNPTYINVSPSREPPSTSRTSQPGASSSKANGHVEKVDAVRSIL 388
Query: 325 GTSGQTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPH 382
SGQ +DD+ KY + ++ E TLRWRH+APTAP+TL C+P+ +DPF++ P
Sbjct: 389 VHSGQPLDDMFKYVPTPPITRMALAEATLRWRHIAPTAPDTLWCHPYFAKDPFVIPETPD 448
Query: 383 VYFAGNQQKFETRLL---------KGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLS 433
+Y GNQ F T+L+ +GS ++ R+V +P F ++GV V+VN++ L+ +
Sbjct: 449 IYVVGNQPAFATKLVSDDGSADGEEGSPKR-CRIVLVPNFRQSGVLVLVNMRTLDVRRVQ 507
Query: 434 FGTQ 437
F Q
Sbjct: 508 FAMQ 511
>gi|325092264|gb|EGC45574.1| DNA polymerase delta small subunit [Ajellomyces capsulatus H88]
Length = 565
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 161/503 (32%), Positives = 243/503 (48%), Gaps = 102/503 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ + + V W+ + VL++ +G C + GT+Y
Sbjct: 48 QQYADIYFLRLARLKPTVAEIAVAAWEGFSIAGEYAKRVDRVLDVRQGELCWVAGTIYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ P + +LEDESGR++L G L S VT
Sbjct: 108 LPLKPNILDDISKEHWTAAPPVRRTYVDPSNQALTKTMLEDESGRLQLTGTLLQSSLLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKE------LPLNS----------------GE 179
G +VA+ G E + G+F V+D+ L PQ E +P S G
Sbjct: 168 GAIVAVLGTENANGDFEVIDIKVPDLPPQPERWERSSVPQESAKRKHSSLEASSDSIEGR 227
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH------LGDEKEQGIAAEIVHVVIAGNS 233
K + LVSGLN+ + + + LL +++ G+ + +++I ++IAGNS
Sbjct: 228 RKKIALVSGLNITGTSGDTVALSLLTEYLLGYNEFPTQTHNNNTPPSSSQITRLIIAGNS 287
Query: 234 IEIPRGLLNGQNLASKDQSRLFE------------------PIKELDILLTQIAAGVPLD 275
+ ++ Q+ A L + PI D L +I +P+
Sbjct: 288 LG--SSMIISQSEAENADPALAKKRHAPKKYGYDATAYNASPINHFDTFLAEILPSIPIT 345
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDN 320
+MPG DPANFSLPQQ ++R +FP S Y + + TNP +++
Sbjct: 346 LMPGETDPANFSLPQQEIHRAMFPRSKAYCSAARPGVAEPAAEPGWLDNVTNPWEGDVEG 405
Query: 321 VRFLGTSGQTIDDLQKY------------SEAND----QLEFMERTLRWRHLAPTAPNTL 364
RF G SGQ +DD+ +Y SE++ +L ME LRWR PTAP+TL
Sbjct: 406 WRFWGCSGQNVDDVLRYIDLEVEGDTLQGSESDKDGEARLRLMEAMLRWRCAVPTAPDTL 465
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR-----------QLVRLVCIPKF 413
CYP+ DPF ++SCPHV+FAGNQ F T +++ S VR++ +PKF
Sbjct: 466 WCYPYQTHDPFTLQSCPHVFFAGNQPSFRTGIVEASTTLSSADNSEEQGTRVRVIALPKF 525
Query: 414 SETGVAVVVNLKNLECHTLSFGT 436
S+TG V+V+ + LE + FGT
Sbjct: 526 SQTGEIVLVDAETLEVEVVKFGT 548
>gi|328352186|emb|CCA38585.1| DNA polymerase delta subunit 2 [Komagataella pastoris CBS 7435]
Length = 459
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 238/434 (54%), Gaps = 38/434 (8%)
Query: 34 QQYSQIYFARLHLMR-ALLYSLVPNWKPH----LPIC---TVLELEEGRECVIIGTLYKH 85
+QY+ IY AR + ++ L+ WK +P+ VL + + +GT++
Sbjct: 33 RQYASIYTARANKLKPRLIEKCSEKWKGEKINGIPVSHTEKVLNISSNKATWCVGTVFCD 92
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPD---DHLVLEDESGRVKLGGAELLPSAYVTG 142
+K KP+IL + S+ P+VK + + D D L+LEDESGR+ L G + VTG
Sbjct: 93 LKYKPNILKDVSESMYGGPVVKKVDGTYADRESDQLMLEDESGRIALDGELIDKILLVTG 152
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
+V + G E + G F V+D++ QK L++ + LVSGL + + + +
Sbjct: 153 CIVGVLGMEINPGVFTVVDIVYPEPGLQKPRLLSNHR---IALVSGLGINGDNLDLSRLE 209
Query: 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL-------F 255
LL + +TG L + + Q + I ++IAGNSI++ G LN + K++ +
Sbjct: 210 LLKEFLTGELLENQAQ--ESSIAKLIIAGNSIKV--GDLNKIHQDKKNKFKATYASNYNA 265
Query: 256 EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY--NTFRSCTNP 313
+ +LD + + +P+DI+PG DPA +LPQQPL++ F S + N + TNP
Sbjct: 266 TAVSQLDNFIHDVIQTIPVDILPGAEDPAEIALPQQPLHKAFFNSSRQFVGNRLNTKTNP 325
Query: 314 HCFELDNVRFLGTSGQTIDDLQKYSEAND-----------QLEFMERTLRWRHLAPTAPN 362
++L LGTSG+ IDD+ KY ND +++ +E T+RW+H+ PTAP+
Sbjct: 326 QWWDLAGTEILGTSGENIDDIFKYVVPNDYHVDEDGCENSRIKIIESTIRWQHILPTAPD 385
Query: 363 TLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
TL CYP+ D DPF++ES PHVYF GNQ +FE++ + + V+L+ +P+F +TG V++
Sbjct: 386 TLWCYPYQDDDPFVLESTPHVYFVGNQARFESKDIILDNGFKVKLLSLPRFDQTGEVVIL 445
Query: 423 NLKNLECHTLSFGT 436
+L +L + +SF
Sbjct: 446 DLNDLSTNLVSFSV 459
>gi|240281243|gb|EER44746.1| DNA polymerase delta small subunit [Ajellomyces capsulatus H143]
Length = 565
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 161/503 (32%), Positives = 243/503 (48%), Gaps = 102/503 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ + + V W+ + VL++ +G C + GT+Y
Sbjct: 48 QQYADIYFLRLARLKPTVAEIAVAAWEGFNIAGEYAKRVDRVLDVRQGELCWVAGTIYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ P + +LEDESGR++L G L S VT
Sbjct: 108 LPLKPNILDDISKEHWTAAPPVRRTYVDPSNQALTKTMLEDESGRLQLTGTLLQSSLLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKE------LPLNS----------------GE 179
G +VA+ G E + G+F V+D+ L PQ E +P S G
Sbjct: 168 GAIVAVLGTENANGDFEVIDIKVPDLPPQPERWERSSVPQESAKRKHSSLEASSDSIEGR 227
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH------LGDEKEQGIAAEIVHVVIAGNS 233
K + LVSGLN+ + + + LL +++ G+ + +++I ++IAGNS
Sbjct: 228 RKKIALVSGLNITGTSGDTVALSLLTEYLLGYNEFPTQTHNNNTPPSSSQITRLIIAGNS 287
Query: 234 IEIPRGLLNGQNLASKDQSRLFE------------------PIKELDILLTQIAAGVPLD 275
+ ++ Q+ A L + PI D L +I +P+
Sbjct: 288 LG--SSMIISQSEAENADPALAKKRHAPKKYGYDATAYNASPINHFDTFLAEILPSIPIT 345
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDN 320
+MPG DPANFSLPQQ ++R +FP S Y + + TNP +++
Sbjct: 346 LMPGETDPANFSLPQQEIHRAMFPRSKAYCSAARPGVAEPAAEPGWLDNVTNPWEGDVEG 405
Query: 321 VRFLGTSGQTIDDLQKY------------SEAND----QLEFMERTLRWRHLAPTAPNTL 364
RF G SGQ +DD+ +Y SE++ +L ME LRWR PTAP+TL
Sbjct: 406 WRFWGCSGQNVDDVLRYIDLEVEGDTLQGSESDKDGEARLRLMEAMLRWRCAVPTAPDTL 465
Query: 365 GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR-----------QLVRLVCIPKF 413
CYP+ DPF ++SCPHV+FAGNQ F T +++ S VR++ +PKF
Sbjct: 466 WCYPYQTHDPFTLQSCPHVFFAGNQPSFRTGIVEASTTLSSADNGEEQGTRVRVIALPKF 525
Query: 414 SETGVAVVVNLKNLECHTLSFGT 436
S+TG V+V+ + LE + FGT
Sbjct: 526 SQTGEIVLVDAETLEVEVVKFGT 548
>gi|254568372|ref|XP_002491296.1| DNA polymerase III (delta) subunit, essential for cell viability
[Komagataella pastoris GS115]
gi|238031093|emb|CAY69016.1| DNA polymerase III (delta) subunit, essential for cell viability
[Komagataella pastoris GS115]
Length = 461
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 238/434 (54%), Gaps = 38/434 (8%)
Query: 34 QQYSQIYFARLHLMR-ALLYSLVPNWKPH----LPIC---TVLELEEGRECVIIGTLYKH 85
+QY+ IY AR + ++ L+ WK +P+ VL + + +GT++
Sbjct: 35 RQYASIYTARANKLKPRLIEKCSEKWKGEKINGIPVSHTEKVLNISSNKATWCVGTVFCD 94
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPD---DHLVLEDESGRVKLGGAELLPSAYVTG 142
+K KP+IL + S+ P+VK + + D D L+LEDESGR+ L G + VTG
Sbjct: 95 LKYKPNILKDVSESMYGGPVVKKVDGTYADRESDQLMLEDESGRIALDGELIDKILLVTG 154
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
+V + G E + G F V+D++ QK L++ + LVSGL + + + +
Sbjct: 155 CIVGVLGMEINPGVFTVVDIVYPEPGLQKPRLLSNHR---IALVSGLGINGDNLDLSRLE 211
Query: 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL-------F 255
LL + +TG L + + Q + I ++IAGNSI++ G LN + K++ +
Sbjct: 212 LLKEFLTGELLENQAQ--ESSIAKLIIAGNSIKV--GDLNKIHQDKKNKFKATYASNYNA 267
Query: 256 EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY--NTFRSCTNP 313
+ +LD + + +P+DI+PG DPA +LPQQPL++ F S + N + TNP
Sbjct: 268 TAVSQLDNFIHDVIQTIPVDILPGAEDPAEIALPQQPLHKAFFNSSRQFVGNRLNTKTNP 327
Query: 314 HCFELDNVRFLGTSGQTIDDLQKYSEAND-----------QLEFMERTLRWRHLAPTAPN 362
++L LGTSG+ IDD+ KY ND +++ +E T+RW+H+ PTAP+
Sbjct: 328 QWWDLAGTEILGTSGENIDDIFKYVVPNDYHVDEDGCENSRIKIIESTIRWQHILPTAPD 387
Query: 363 TLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
TL CYP+ D DPF++ES PHVYF GNQ +FE++ + + V+L+ +P+F +TG V++
Sbjct: 388 TLWCYPYQDDDPFVLESTPHVYFVGNQARFESKDIILDNGFKVKLLSLPRFDQTGEVVIL 447
Query: 423 NLKNLECHTLSFGT 436
+L +L + +SF
Sbjct: 448 DLNDLSTNLVSFSV 461
>gi|299753847|ref|XP_001833575.2| DNA polymerase subunit delta-2 [Coprinopsis cinerea okayama7#130]
gi|298410490|gb|EAU88120.2| DNA polymerase subunit delta-2 [Coprinopsis cinerea okayama7#130]
Length = 537
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 241/468 (51%), Gaps = 68/468 (14%)
Query: 34 QQYSQIYFARLHLMRA-LLYSLVPNWK-----PHLPICTVLELEEGRECVIIGTLYKHMK 87
QYS IYF RL L+R + + WK P L + VLE+ +G C IIGT+Y M
Sbjct: 29 HQYSNIYFIRLRLLREHVEKNAQKRWKNINGNPRL-VPRVLEVTKGNLCYIIGTVYMEMP 87
Query: 88 LKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVAL 147
LKP+++++ +++RS P F P D ++LEDESGR+ L G L VTG+++A
Sbjct: 88 LKPNVMEDLTRDRSIQAPPPPAKFYSPTDKVMLEDESGRIHLVGDCLADKRLVTGVIIAA 147
Query: 148 HGKETSAGEFLVLDVLDAGLAPQK-----------ELPLNSGEDKYVVLVSGLNVGSGTS 196
G ET GEF V+D+ AG PQ E+ S D ++ + SGL+VG +
Sbjct: 148 LGMETPNGEFEVVDICTAGFPPQPSSLAQDEDVEMEVDTESQPDSWIAIASGLDVGGDHT 207
Query: 197 NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLNGQNLASKDQSR 253
+ + QLL++++TG ++Q ++I +++AG+++ + R L A + ++R
Sbjct: 208 SDGRIQLLIEYLTGETEIAEDQIPPSQITRLILAGDTVSSDAVAR-LAEQPTTAEEKKAR 266
Query: 254 L--------FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYN 305
P+ L L ++ +P+ ++PG DP+ LPQ+PL R +F +
Sbjct: 267 KHGKEPPPDLHPVHILASHLDDLSQSLPIHVLPGEFDPSATILPQRPLPRAMFGPAGKQP 326
Query: 306 TFRSCTNPHCFEL----------------DNVRFLGT------SGQTIDDLQKY--SEAN 341
TF +NP + N R G SGQ ++DL +Y +++N
Sbjct: 327 TFFCESNPTYLRIAPGEIVQDNSVPEEQASNQRVKGARTLLINSGQPLNDLFRYLPNKSN 386
Query: 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLL---- 397
+L +E TL+WRH+APTAP+TL C+P+ DPF++ P +Y G Q++F T+L+
Sbjct: 387 SRLAILESTLKWRHMAPTAPDTLWCHPYVSEDPFILYELPDLYIVGGQRRFGTKLVEVDE 446
Query: 398 ----------KGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
+G + R++ +P FS TGV V+VNLK L+ L G
Sbjct: 447 RSSGATNGQSQGGKKSRCRIILVPHFSRTGVLVLVNLKTLDVKCLQIG 494
>gi|302418784|ref|XP_003007223.1| DNA polymerase subunit delta-2 [Verticillium albo-atrum VaMs.102]
gi|261354825|gb|EEY17253.1| DNA polymerase subunit delta-2 [Verticillium albo-atrum VaMs.102]
Length = 497
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 155/491 (31%), Positives = 245/491 (49%), Gaps = 69/491 (14%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARL-HLMRALLYSLVPNW---- 58
D E +L R + Y L F ++K+ QQ++ +YF RL H+ A+ W
Sbjct: 16 DAETTQLARAPSIYKPLPT-FVLKKDRSYQQQFADVYFLRLTHIKPAVEKIAAEAWDGTV 74
Query: 59 ---KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD 115
+P + VL++ +G C + GT+Y M+LKP+IL++ SK+R + V + D
Sbjct: 75 IGGEPAKQVNRVLDVRQGELCWVAGTIYMEMRLKPNILEDVSKDRWISAPVSTEKYYSED 134
Query: 116 DH--LVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL 173
D +++ED+SGR++L G L VTG V+A+ G E + GE V+D+ A ++PQ E
Sbjct: 135 DQDQVMIEDDSGRIRLVGDVLKTVNLVTGCVIAVMGSENANGELEVIDIKFADISPQPE- 193
Query: 174 PLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEK----------EQGIAAE 223
++ + N + + + + D T G E+ Q A+
Sbjct: 194 -------RWDLTKPPSNGKQQVKD--EDEEMKDAPTAEAGAERLPSCPSLDPSAQKEASN 244
Query: 224 IVHVVIAGNSIEIPRGLLNGQNLASKD--------QSRLFEPIKE--LDILLTQIAAGVP 273
I ++IAGNSI + + K S + P+ LD L+++ +P
Sbjct: 245 ISRLIIAGNSISLTEAPKLDPSATDKKPVTKKYGYDSSTYNPVPSQLLDDFLSELLPSIP 304
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------FRSCTNPHCFELDNVRFL 324
+ ++PG DPAN S PQQP++ +FP + ++ F + TNP E+D R L
Sbjct: 305 ITLLPGAQDPANASYPQQPIHTAMFPKARPWSVNPDTNEAGWFDNTTNPWEGEIDGWRVL 364
Query: 325 GTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL-------------------G 365
GT GQ +DD+ KY ++ D+L ME RWR APTAP+TL G
Sbjct: 365 GTGGQNVDDVFKYIDSEDRLGMMEAMCRWRCSAPTAPDTLCEFPPSDMACRDTIADAAAG 424
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLK 425
YPF D DPF+++S PH+YF G Q +F T++++G + Q +RL+ +P FSET V+V+ +
Sbjct: 425 SYPFQDDDPFVIKSAPHLYFVGCQPEFSTKVIQGPEGQQIRLITVPSFSETKELVLVDTE 484
Query: 426 NLECHTLSFGT 436
LE + T
Sbjct: 485 TLEVSKVRIST 495
>gi|241956019|ref|XP_002420730.1| DNA polymerase III (delta) small subunit, putative [Candida
dubliniensis CD36]
gi|223644072|emb|CAX41815.1| DNA polymerase III (delta) small subunit, putative [Candida
dubliniensis CD36]
Length = 474
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 224/391 (57%), Gaps = 25/391 (6%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C +IGT++ K K IL++ K ++P ++ ++ ++LEDES
Sbjct: 84 ILDIASGKLCWVIGTVFCDAKYKLDILNDVEKGTDDVLPLEPVTYVDKNEQPIVMLEDES 143
Query: 125 GRVKLGGAELL-PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
GR L L + VTG +VA+ G E AG F ++D+ APQK L L + +
Sbjct: 144 GRAILNNDNFLTKNLLVTGCIVAVLGIEVQAGIFEIMDIAYPDCAPQKPLTLGENKRGKI 203
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP------ 237
LVSGL++G L+ +LL ++ G LG+ +++ ++I ++IAG+SI +P
Sbjct: 204 ALVSGLSIGGEGQYDLKLELLKQYLLGELGNAEDKLNTSQISSLIIAGDSI-MPISNLRA 262
Query: 238 ----RGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
+ + N SK+ S+ K+LD +T I +P+ +MPG NDPA LPQQP
Sbjct: 263 EMDLKNYVTTNNYGSKNISKYNANSFKKLDEFITDIIVSLPVAVMPGKNDPAEICLPQQP 322
Query: 293 LNRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-SEANDQ----L 344
L+R LF +++ + TNP ++ V+ LGTSGQ +DD++KY + ND +
Sbjct: 323 LHRSLFKNNSSLLNGDRLNRLTNPQWIDVQTVKILGTSGQNVDDIKKYIAPQNDHQFTSI 382
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL-VESCPHVYFAGNQQKFETRLLKGSDRQ 403
E ME ++W++ PTAP+TL CYP+ + DPF+ + PHVYF GNQQ ++++LL+ D
Sbjct: 383 EIMENNIKWQNFIPTAPDTLYCYPYENYDPFIFCDDLPHVYFVGNQQSYDSKLLQ-YDGV 441
Query: 404 LVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+RL+ +PKF E+G V+++L LE ++
Sbjct: 442 NIRLISVPKFKESGQFVLLDLDTLETEVVTI 472
>gi|46125573|ref|XP_387340.1| hypothetical protein FG07164.1 [Gibberella zeae PH-1]
Length = 502
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 161/478 (33%), Positives = 243/478 (50%), Gaps = 57/478 (11%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-W-------KPHLP 63
R + Y L+ F + K+ QQY +YF RL ++ + + W +
Sbjct: 25 RSASAYKPLNS-FALDKQRSYKQQYGDMYFLRLTKIKPAVDQVAATAWDGTTVGDEEAQR 83
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPDDHLVLED 122
+ VL++ +G C + GT+Y M LKP+IL++ SK+R + P++ P F DD ++LED
Sbjct: 84 VDRVLDVRQGELCYVTGTVYMEMPLKPNILEDVSKDRWISAPILTPKYFSD-DDQIMLED 142
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-----PLNS 177
ESGR++L G L VTG +V + G E S GEF ++D+ L PQ E P++
Sbjct: 143 ESGRIRLVGDILKTVQLVTGCIVGVMGTENSNGEFEIIDIKFPDLPPQPERWSLSKPVSD 202
Query: 178 GE------------------DKYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQ 218
+K + +VSGL+ G+ S L+ LL++++ G Q
Sbjct: 203 KSKTKDEDEEMTDVSDKKKGNKKIAIVSGLSFSGTDASYALELDLLLEYLLGEALGSSGQ 262
Query: 219 GIAAEIVHVVIAGNSIEI----PRGL------LNGQNLASKDQSRLFE-PIKELDILLTQ 267
+ I ++IAGNSI P GQ D S P + D + +
Sbjct: 263 IDVSHISRLIIAGNSISTTDRQPAAADETLPEKKGQKKYGYDASTYNPLPSQLFDAFVAE 322
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT-----------FRSCTNPHCF 316
+ +P+ ++PG DPAN S PQQP++ +FP + Y F + TNP
Sbjct: 323 LLPSIPVTMLPGAQDPANASYPQQPVHPAMFPAARAYTRDPAAPVDQPGWFDTVTNPWEA 382
Query: 317 ELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
EL+ R LGT GQ +DD+ KY ++D+L ME RWR APTAP+TL YPF D DPF+
Sbjct: 383 ELEGWRVLGTGGQNVDDVFKYVGSDDRLGMMEAMCRWRCCAPTAPDTLWSYPFQDDDPFV 442
Query: 377 VESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++CPH+YF GNQ +F T+++ G Q VRLV +P FS T V+++ + LE +
Sbjct: 443 MQTCPHLYFVGNQPQFSTKVIHGPKGQSVRLVTVPSFSATKELVLIDTETLEVERIKI 500
>gi|154279190|ref|XP_001540408.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412351|gb|EDN07738.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 565
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 162/501 (32%), Positives = 241/501 (48%), Gaps = 98/501 (19%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ + + V W+ + VL++ +G C + GT+Y
Sbjct: 48 QQYADIYFLRLARLKPTVAEIAVAAWEGFNIAGEYAKRVDRVLDVRQGELCWVAGTIYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ P + +LEDESGR++L G L S VT
Sbjct: 108 LPLKPNILDDISKEHWTAAPPVRRTYVDPSNQALTKTMLEDESGRLQLTGTLLQSSLLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKE------LPLNSGEDKY------------- 182
G +VA+ G E + G+F V+D+ L PQ E P S + K+
Sbjct: 168 GAIVAVLGTENANGDFEVIDIKVPDLPPQPERWERSSAPQESAKRKHSSLEASSDSIERR 227
Query: 183 ---VVLVSGLNVGSGTSNPLQFQLLVDHITGH------LGDEKEQGIAAEIVHVVIAGNS 233
+ LVSGLN+ + + + LL +++ G+ + +++I ++IAGNS
Sbjct: 228 RKKIALVSGLNITGTSGDTVALSLLTEYLLGYNEFPTQTHNNNTPPSSSQITRLIIAGNS 287
Query: 234 ------IEIPRGLLNGQNLASKDQSRL----------FEPIKELDILLTQIAAGVPLDIM 277
I P LA K + PI D L +I +P+ +M
Sbjct: 288 LGSSMIISQPEAENADPALAKKRHAPKKYGYDATAYNASPINHFDTFLAEILPSIPITLM 347
Query: 278 PGPNDPANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDNVR 322
PG DPANFSLPQQ ++R +FP S Y + + TNP +++ R
Sbjct: 348 PGETDPANFSLPQQEIHRAMFPRSKAYCSAALPGAAEPAAEPGWLDNVTNPWEGDVEGWR 407
Query: 323 FLGTSGQTIDDLQKY------------SEAND----QLEFMERTLRWRHLAPTAPNTLGC 366
F G SGQ +DD+ +Y SE++ +L ME LRWR PTAP+TL C
Sbjct: 408 FWGCSGQNVDDVLRYIDLEVEGDTLQGSESDKDGEARLRLMEAMLRWRCAVPTAPDTLWC 467
Query: 367 YPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS-----------DRQLVRLVCIPKFSE 415
YP+ DPF ++SCPHV+FAGNQ F T +++ S VR++ +PKFS+
Sbjct: 468 YPYQTHDPFTLQSCPHVFFAGNQPSFRTGIVEASTILSSEDNGEEQGTRVRVIALPKFSQ 527
Query: 416 TGVAVVVNLKNLECHTLSFGT 436
TG V+V+ + LE + FGT
Sbjct: 528 TGEIVLVDAETLEVEVVKFGT 548
>gi|317146095|ref|XP_003189770.1| DNA polymerase delta subunit 2 [Aspergillus oryzae RIB40]
Length = 540
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 171/518 (33%), Positives = 255/518 (49%), Gaps = 86/518 (16%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQ--KETYRGQQYSQIYFARLHLMRALLYSL-VPNWKP 60
D E A + R ++Y L F++ +E + QQY +YF RL ++ + + V W+
Sbjct: 16 DEEYAPVYRSSSSYNPL-HTFQLPSGQERHYQQQYGDMYFLRLAKLKPAVEEIAVETWEG 74
Query: 61 H-------LPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERST-TPLVKPHNF- 111
+ VL++ +G C + GT+Y + LKP+ILD+ +KE T P +P
Sbjct: 75 FSIAGEHARRVERVLDVRQGELCWVAGTIYMDLPLKPNILDDLTKENFTLAPPPRPTYLD 134
Query: 112 -MHPD-DHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
HP+ ++LEDESGR++L G L TG +VA+ G E S G+F V+DV L
Sbjct: 135 PAHPELTQIMLEDESGRLRLTGNMLRSIQLATGAIVAVLGTENSNGDFEVIDVKVPDLPR 194
Query: 170 Q--------KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG------DE 215
Q K+ + VSGL + + + L +LL D++ G+ G DE
Sbjct: 195 QPRRWERDEKQSSQKGTGKSKIAFVSGLGITGTSGDTLSLELLTDYLLGYTGSQSPANDE 254
Query: 216 KEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK-----------DQSRL-FEPIKELDI 263
A+ I +VIAGNS+ +N AS D S PI + D
Sbjct: 255 SAPPDASAITRLVIAGNSLGASMTTDPNENAASSKKKSGPKKYGYDASAYNASPITQFDN 314
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY-------------NTFRSC 310
L +I +P+ +M G +DPANFSLPQQ ++R +FP S Y F S
Sbjct: 315 FLAEILPSIPVTLMAGASDPANFSLPQQGIHRAMFPRSRAYCSGPTSAGETPEPGWFDSV 374
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKY-------------SEANDQLEFMERTLRWRHLA 357
TNP +++ R G+SGQ +DD+ +Y +A +++ ME LRWR
Sbjct: 375 TNPWEGDIEGWRLWGSSGQNVDDVLRYLDFANSSGTVGADGDAEARVKIMEAMLRWRCGV 434
Query: 358 PTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL--------LKGSDRQL----- 404
PTAP+T+ YPF DPF++E+CPH++FAGNQ +F+T + L G+D ++
Sbjct: 435 PTAPDTIWSYPFQTHDPFVMEACPHIFFAGNQPQFKTAVIEGDAPLKLNGTDTEMTGTND 494
Query: 405 ------VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
VRL+ IP F ETG V+V+ + LE + FGT
Sbjct: 495 NISGPRVRLLSIPTFKETGELVLVDAETLEVEVVKFGT 532
>gi|328768289|gb|EGF78336.1| hypothetical protein BATDEDRAFT_13201, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 434
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/438 (32%), Positives = 226/438 (51%), Gaps = 45/438 (10%)
Query: 33 GQQYSQIYFARLHLMRA-LLYSLVPNWKP-----------HLPICTVLELEEGRECVIIG 80
QY+ +YF RL+L+R +L + W H+P V++++ G C IIG
Sbjct: 6 ASQYASLYFVRLNLLRPRVLAAAQKRWSTVSCKQSDSLPQHVP--RVVDVQTGVLCYIIG 63
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140
T++ M KP+ILDE S+E T + ++ D ++LEDESGR+ L G + + ++
Sbjct: 64 TVFLDMSEKPNILDEVSREEWTALPTPKNKYVSEKDAVLLEDESGRIVLTGDIIKTTVFM 123
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED--------KYVVLVSGLNVG 192
TG++ AL G E GEF VLDV A PQ LP+++ ++ LVSGLN
Sbjct: 124 TGVIAALLGSENQEGEFQVLDVCYAAFDPQPPLPISTDSGINGCNIYHPWIALVSGLNFE 183
Query: 193 SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS 252
++++LL D +TG G ++Q + I +VI GN++ L K +
Sbjct: 184 GDGQYDMRYELLRDFLTGESGTFQDQLKISHISRLVICGNTMA---QLHVSAETLQKAKL 240
Query: 253 RLFEP---------IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+ P + +D L + +P+D++PG DP LPQQP++ +F +
Sbjct: 241 KFHGPDPNEYNEWVVDTVDQFLVSVGQSMPVDVVPGATDPTTSFLPQQPIHSSIFHSACN 300
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
+ TNP+ + R Q++DD+ K + + ++ L+W H+APTAP+T
Sbjct: 301 LTSLSMVTNPYTATVGGTR------QSLDDMYKMTNVAEGVDLASEVLKWGHVAPTAPDT 354
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK--GSDR---QLVRLVCIPKFSETGV 418
L CYPF+ DP ++ PH+Y GNQ KF+T++++ G + R++ +P FS TG
Sbjct: 355 LPCYPFSQNDPMVITVRPHLYIIGNQTKFDTKVIELCGDGEPTLETTRVILVPSFSNTGT 414
Query: 419 AVVVNLKNLECHTLSFGT 436
V+VNL L+ T+ FGT
Sbjct: 415 VVLVNLATLDYKTVEFGT 432
>gi|388856329|emb|CCF50138.1| related to HYS2-DNA-directed DNA polymerase delta, 55 KD subunit
[Ustilago hordei]
Length = 514
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 227/408 (55%), Gaps = 38/408 (9%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM-HPDDHLVLEDESG 125
+L++ +G C ++G +Y M LKP +L++ ++E+ P F+ + D L +ED+SG
Sbjct: 105 ILDIRQGEICYVVGNIYCAMPLKPDVLEDLTREQWLAPQPVRAKFVDYAKDELFIEDQSG 164
Query: 126 RVKLGGAEL-----LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL-APQKELPL---- 175
RVKL G + L +TG+V A+ G ET AG+F V+D + A L +P K
Sbjct: 165 RVKLVGEAIRGGTALREMLITGVVAAVLGTETRAGDFDVVDAVFASLPSPAKAASSGRDG 224
Query: 176 -----NSGEDKYVVLVSGLNVGSGTS---NPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+ G D++VVL+SGL++G G S + L QLLV+++TG LG + ++ + IV
Sbjct: 225 KAKGESGGTDQWVVLISGLSLGGGESELDSELSLQLLVEYLTGELGSDSDRSSTSSIVAA 284
Query: 228 VIAGNSIEIPRGLLNGQNLASK----DQSRLFE-PIKELDILLTQIAAGVPLDIMPGPND 282
+IAGNS+ + ++ K DQ P LD LLT + + +P+ ++PG D
Sbjct: 285 IIAGNSLAPQTRNEDEESCKPKRYGQDQPTFSSAPTLALDQLLTDLCSAMPVHLLPGEKD 344
Query: 283 PANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND 342
PA+ ++PQQP++ L P + +++ TNP + + LGT+GQ IDD+ KY + D
Sbjct: 345 PASVAIPQQPIHFALLPRAGRFDSLHRHTNPAWLRIGGKKLLGTAGQNIDDIFKYVQQAD 404
Query: 343 --QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS 400
+LE RTL W HLAPTAP+TL CYPF DPF+++ P V F GNQ K+ + + +
Sbjct: 405 DGRLEMAARTLEWGHLAPTAPDTLWCYPFKSTDPFVLKERPDVMFVGNQPKYASAVYRYD 464
Query: 401 DRQL------------VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
D + R+V IP+F++T V++NL +LE + T
Sbjct: 465 DDEADENSQENAQDKGCRVVLIPQFAKTKQVVLLNLASLETKLVCVET 512
>gi|403375590|gb|EJY87771.1| Archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Oxytricha trifallax]
Length = 504
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 158/480 (32%), Positives = 247/480 (51%), Gaps = 59/480 (12%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKP--HLP 63
E+ +R TY DE + I+ + QY+ Y+ RL ++ + S W+ HL
Sbjct: 5 ESLHKRSNETYKLHDEQYIIKHNSKDIVQYATFYWLRLQSLKPHVRESAELKWEKDQHLT 64
Query: 64 ICT-VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMH-----PDDH 117
T +L++ G+ VIIGT++K M LKPSIL ++ ++ F H +D+
Sbjct: 65 YVTNILDIRPGQLTVIIGTIFKEMPLKPSIL------KNVLGVLGTQKFKHGLYVGEEDY 118
Query: 118 LVLEDESGRVKLG-GAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-- 174
VLED SGR++L G + P +V+G ++ L G + G F V D AG+ + LP
Sbjct: 119 AVLEDSSGRIRLKKGLKFNPDFFVSGSILGLKGVVDTNGFFEVHDHTYAGIPFSEPLPKS 178
Query: 175 --------------LNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGI 220
L+ + ++V LVSGL G T++ ++L+ G LG K +
Sbjct: 179 VNIRNQRDLYSPEALSDPKREFVALVSGLEFGK-TTDVFSSEMLIRFFKGELGGPKNAKL 237
Query: 221 AAEIVHVVIAGNSIEIP-------RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVP 273
A++I VVI GNSI P RG QNL + + + + ++ L ++ V
Sbjct: 238 ASQISRVVICGNSIVQPEDTDQVLRGSYRVQNLNQRVYKTISDVLDTFELFLHNLSQLVD 297
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD 333
+DIMPG +D ++ LPQQPLN CLFP + TNPH FE++ ++FLG SGQ ++D
Sbjct: 298 VDIMPGQDDFSSSFLPQQPLNSCLFPQLQDKQSINLVTNPHKFEMNGLKFLGCSGQNLND 357
Query: 334 LQKYSEAN----------DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHV 383
+ Y++ N D L ++ TL RH+ PTAP+TL YP + DPF+++ PHV
Sbjct: 358 IYSYTKGNLLANSTEQNYDALSGLQLTLEMRHVCPTAPDTLRAYPQLEEDPFIIDKAPHV 417
Query: 384 YFAGNQQKFETRLLKGSDRQL---------VRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
YFAGNQ ++ +L + Q V+L+ +P FS+T V+++L L+ + + F
Sbjct: 418 YFAGNQAAYQEDILLADNNQKHSNSSFIQGVKLISVPTFSQTKSIVLLDLSTLQSYEVKF 477
>gi|448532815|ref|XP_003870507.1| Hys2 DNA polymerase III (delta) subunit [Candida orthopsilosis Co
90-125]
gi|380354862|emb|CCG24378.1| Hys2 DNA polymerase III (delta) subunit [Candida orthopsilosis]
Length = 477
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 218/392 (55%), Gaps = 23/392 (5%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C +IGT++ K K +IL++ + ++P +++ D+ ++LEDES
Sbjct: 87 ILDIVGGKLCWVIGTVFVDAKYKLNILNDVERGTDDVLPLEPVSYLDGDEQPVVMLEDES 146
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
GR L + L + VTG +VA+ G E AG F ++DV APQ+ L +
Sbjct: 147 GRAILHNEDFLQQNLLVTGCIVAVLGIEIQAGIFEIMDVAYPECAPQRPLSSADTRSGKI 206
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP------ 237
LVSGLN+G L+ +LL ++ G LG + + + I ++IAG+SIE P
Sbjct: 207 ALVSGLNIGLEGHYDLKLELLKQYLVGELGGDDSKQFNSNIAQLIIAGDSIE-PLQTIDE 265
Query: 238 ----RGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
+ + N SK+ S+ E +K+LD + ++ +P+ +MPG +DPA LPQQP
Sbjct: 266 EEDLKNYITTNNYGSKNISKYNNESLKQLDQFINELIVTMPIAVMPGEHDPAEICLPQQP 325
Query: 293 LNRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEF 346
L++ LF + + TNP E NVR LGTSGQ ++D++KY +D L+
Sbjct: 326 LHKSLFKSNQSVLGSERLSRLTNPTWIEASNVRMLGTSGQNVNDVKKYVTRQSDSDSLKI 385
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES-CPHVYFAGNQQKFETRLLKGSDR-QL 404
+ +++W++ PTAP+TL CYPF D DPF+ ES PHVYF GNQ KF+T K D
Sbjct: 386 IRSSMKWQNFVPTAPDTLYCYPFEDADPFVFESELPHVYFVGNQDKFQTDTYKCPDSGAQ 445
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
VRL+ IP+F TG ++++L LE + T
Sbjct: 446 VRLISIPQFKSTGEFIILDLDTLEVELVKIET 477
>gi|451848592|gb|EMD61897.1| hypothetical protein COCSADRAFT_147056 [Cochliobolus sativus
ND90Pr]
Length = 519
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/446 (32%), Positives = 235/446 (52%), Gaps = 48/446 (10%)
Query: 29 ETYRGQQYSQIYFARL-HLMRALLYSLVPNW-------KPHLPICTVLELEEGRECVIIG 80
+ + QQ++ +YF RL L + + W + + VL++ +G C ++G
Sbjct: 41 DRHYSQQFADMYFLRLIQLKKTVKERAEEAWHNFELGGQKASFVDRVLDVRQGELCWVVG 100
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAELLPSA 138
T+Y M KP++LD+ K+ + ++ P D ++LEDESGR+++ G E L
Sbjct: 101 TVYMEMAQKPNVLDDIGKDHWIADPPQRDTYISPSGGDEMMLEDESGRLRVTG-EPLHGH 159
Query: 139 YVTGIVVALHGKETSAGEFLVLDVL--------------DAGLAPQKE-LPLNSGEDKYV 183
+VTG ++A G E + G F V+ D L+ +K+ +P K +
Sbjct: 160 FVTGCILAALGTEEADGTFKVIATQCADLPRQPPRWERDDIALSKEKQSIPKREPAGK-L 218
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG 243
+VSGL + + + LLV+++TG D Q A++I ++IAG S+ +L+
Sbjct: 219 AIVSGLGLTGADDDEVALDLLVEYLTGEAADPSTQEDASKITRLMIAGGSLARGSPILSR 278
Query: 244 QNLASKDQ----------SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
++ A+K S P + LD L +I +P+ ++PG +DP+N +LPQQPL
Sbjct: 279 EDFAAKKSAARHYGYDASSYNAAPTERLDEFLCEILPTLPITMLPGASDPSNVALPQQPL 338
Query: 294 NRCLFPGSATY-----------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND 342
+ LFP + Y N F + TNP ++D R L T GQT+ DL KY +
Sbjct: 339 HPALFPNTRLYAEPPIASNETLNGFDAVTNPWTGDIDGYRVLSTGGQTVKDLLKYFKHVK 398
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR 402
++ ME LRWR +APTAP+TL CYPF D DP ++ CPH+Y AG Q+KFE +++K
Sbjct: 399 SVDAMEMMLRWRCVAPTAPDTLWCYPFQDHDPLMLTECPHMYIAGCQKKFEKKIIKDPAG 458
Query: 403 QLVRLVCIPKFSETGVAVVVNLKNLE 428
Q V +V +PKF TG V+V++++ +
Sbjct: 459 QKVLIVSVPKFHTTGKIVLVDMESWD 484
>gi|449295481|gb|EMC91503.1| hypothetical protein BAUCODRAFT_79984 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 247/486 (50%), Gaps = 62/486 (12%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYR--GQQYSQIYFARLHLMRALLYSLVPNWKPH 61
D + L+R +TY L + + K R QQY+ +YFARL ++ + L
Sbjct: 12 DQQYVSLERTASTYTPL-ATYNLPKGENRHYQQQYADMYFARLAQLKPAVEKLASEAWAE 70
Query: 62 LPIC--------TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMH 113
I VL++ +G C + GT+Y M LKP++L++ KE + P +
Sbjct: 71 FEIAGETALRKDRVLDVRQGELCWVAGTVYMEMPLKPNVLEDIGKEHW---IAAPPPRIK 127
Query: 114 PDDHL----VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
D + +LEDESGR++L G L VTG +VA+ G E G+F VLD+ L
Sbjct: 128 YDSGIGLGIMLEDESGRLRLTGGFLHECLLVTGAIVAVVGTENKDGDFEVLDLRVPDLPR 187
Query: 170 Q------------------KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH 211
Q +E+ +G+ V +VSGL + + L LL++++ G
Sbjct: 188 QPVRWELEDGNGALNGKATQEVRPTAGK---VAIVSGLAISGDEGDTLLLDLLLEYLLGE 244
Query: 212 LGDEKEQGIAAEIVHVVIAGNSIE-----------IPRGLLNGQNLASKDQSRL-FEPIK 259
+ QG AA++ ++IAGNS+ + +G+ + D S P
Sbjct: 245 CAEPSMQGDAAKVSRLIIAGNSLSNSSPIPTREEVVAASKKSGRKIYGYDSSSYNAAPTD 304
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY----------NTFRS 309
D L + +P+ ++PG DP + SLPQ P++ +FP + Y + F S
Sbjct: 305 RFDQWLAALLPSMPVTLLPGEQDPTSTSLPQPPIHAAMFPHARAYMSLPQAREDASWFDS 364
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKY-SEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP F +D RFLGT GQ +DD+ KY S+ ++LE ME LRWR APTAP+TL CYP
Sbjct: 365 TTNPAEFNVDGFRFLGTGGQPVDDVYKYISDCEERLEMMEAMLRWRLTAPTAPDTLWCYP 424
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F D D F+++ CPH++F GNQ KFET +++G Q VRLV +PKF +TG V+V+++ L
Sbjct: 425 FQDGDQFVMKECPHIFFVGNQPKFETAVIEGPVGQQVRLVAVPKFRDTGELVIVDVETLV 484
Query: 429 CHTLSF 434
+ F
Sbjct: 485 PEVVKF 490
>gi|403359564|gb|EJY79446.1| Archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Oxytricha trifallax]
Length = 504
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 158/480 (32%), Positives = 247/480 (51%), Gaps = 59/480 (12%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKP--HLP 63
E+ +R TY DE + I+ + QY+ Y+ RL ++ + S W+ HL
Sbjct: 5 ESLHKRSNETYKLHDEQYIIKHNSKDIVQYATFYWLRLQSLKPHVRESAELKWEKDQHLT 64
Query: 64 ICT-VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMH-----PDDH 117
T +L++ G+ VIIGT++K M LKPSIL ++ ++ F H +D+
Sbjct: 65 YVTNILDIRPGQLTVIIGTIFKEMPLKPSIL------KNVLGVLGTQKFKHGLYVGEEDY 118
Query: 118 LVLEDESGRVKLG-GAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-- 174
VLED SGR++L G + P +V+G ++ L G + G F V D AG+ + LP
Sbjct: 119 AVLEDSSGRIRLKKGLKFNPDFFVSGSILGLKGVVDTNGFFEVHDHTYAGIPFSEPLPKS 178
Query: 175 --------------LNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGI 220
L+ + ++V LVSGL G T++ ++L+ G LG K +
Sbjct: 179 VNIRNQRDLYSPEALSDPKREFVALVSGLEFGK-TTDVFSSEMLIRFFKGELGGPKNAKL 237
Query: 221 AAEIVHVVIAGNSIEIP-------RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVP 273
A++I VVI GNSI P RG QNL + + + + ++ L ++ V
Sbjct: 238 ASQISRVVICGNSIVQPEDTDQVLRGSYRVQNLNQRVYKTISDVLDTFELFLHNLSQLVD 297
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD 333
+DIMPG +D ++ LPQQPLN CLFP + TNPH FE++ ++FLG SGQ ++D
Sbjct: 298 IDIMPGQDDFSSSFLPQQPLNSCLFPQLQDKQSINLVTNPHKFEMNGLQFLGCSGQNLND 357
Query: 334 LQKYSEAN----------DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHV 383
+ Y++ N D L ++ TL RH+ PTAP+TL YP + DPF+++ PHV
Sbjct: 358 IYSYTKGNLLANSTEQNYDALSGLQLTLEMRHVCPTAPDTLRAYPQLEEDPFIIDKAPHV 417
Query: 384 YFAGNQQKFETRLLKGSDRQL---------VRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
YFAGNQ ++ +L + Q V+L+ +P FS+T V+++L L+ + + F
Sbjct: 418 YFAGNQAAYQEDVLLADNNQKHSNSSFIQGVKLISVPTFSQTKSIVLLDLSTLQSYEVKF 477
>gi|310794252|gb|EFQ29713.1| DNA polymerase alpha/epsilon subunit B [Glomerella graminicola
M1.001]
Length = 500
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 230/452 (50%), Gaps = 47/452 (10%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHL-------PICTVLELEEGRE 75
F + KE QQY+ +YF RL ++ + ++ W + + VL++ +G
Sbjct: 37 FALPKERSYQQQYADVYFLRLTSIQPAVNAVAAEAWDGTVIGGEEAKHVNRVLDVRQGEL 96
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDESGRVKLGGAE 133
C + GT+Y M LKP+IL++ +K+R + V + DD ++LED+SGR++L G
Sbjct: 97 CWVTGTVYMDMALKPNILEDVTKDRWISAPVSTDRYYSDDDKDTIMLEDDSGRIRLVGDV 156
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE---LPLNSGED---------- 180
L VTG ++ + G E + GE V+DV LAPQ L + +D
Sbjct: 157 LKSIHLVTGTIIGVMGTENANGELEVIDVKFPDLAPQPSRWTLTDSPSQDHDMSGTSNPS 216
Query: 181 ----KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV---VIAGNS 233
+ +VSGL+ SG+ +L + ++E+ H+ +IAGNS
Sbjct: 217 QRPSSKIAIVSGLSF-SGSDASYALELSLLLEFLLGEALTPAAQSSELAHISRLIIAGNS 275
Query: 234 IEIPRGLLNGQNLASKDQSRLFE-------PIKELDILLTQIAAGVPLDIMPGPNDPANF 286
I N + + ++ ++ P + D L + +P+ +MPG DPAN
Sbjct: 276 ISSSTSTANPASGTAANKKYGYDASAYNPLPSQLFDEFLADLLPSIPVTLMPGAEDPANA 335
Query: 287 SLPQQPLNRCLFPGSATY---------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY 337
S PQQP++ +FP S Y F + TNP E+D R LGT GQ +DD+ KY
Sbjct: 336 SYPQQPIHAAMFPRSRPYCAAPGAKEPGWFDTVTNPWEGEIDGWRVLGTGGQNVDDVFKY 395
Query: 338 SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLL 397
+++D+L ME RWR APTAP+TL YPF D DPF+++ PH+YF G Q F T ++
Sbjct: 396 VDSDDRLGMMEAMCRWRCSAPTAPDTLWAYPFQDNDPFVMKDAPHLYFVGCQPDFSTTVI 455
Query: 398 KGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
+G D Q VRLV +P F+ET V+V+ + LE
Sbjct: 456 QGGDGQQVRLVTVPSFAETKELVLVDTETLEV 487
>gi|448124019|ref|XP_004204814.1| Piso0_000093 [Millerozyma farinosa CBS 7064]
gi|358249447|emb|CCE72513.1| Piso0_000093 [Millerozyma farinosa CBS 7064]
Length = 489
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 218/399 (54%), Gaps = 30/399 (7%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLED 122
+L++ G+ C ++GT+Y MK K +IL + P +++ + +++ED
Sbjct: 89 ILDISSGQLCWVVGTIYTEMKNKLNILQDVEMGVDDVLPKIPESYVDQESEEMPIVMIED 148
Query: 123 ESGRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
ESGR L + L + VTG +VA+ G E AG F ++DV+ ++PQK LP S + K
Sbjct: 149 ESGRAVLHNDDFLKKNILVTGCIVAILGIEIQAGIFEIMDVVYPAMSPQKPLPPPSDQPK 208
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLL 241
+ VSGLN+ ++ L +LL ++ G LG + ++ A+I H+VIAG+SI
Sbjct: 209 KIAFVSGLNLRDYANSELSVELLKQYLAGELGSDADKEYVAQISHLVIAGDSISCINTSD 268
Query: 242 N---GQNLASKDQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
N N SK+ S+ E ++ D + + +P+ +MPG NDPA LPQQ ++R +
Sbjct: 269 NDTSSNNYGSKNTSKFSPESLELFDQFIQSVLPSMPISVMPGLNDPAEICLPQQKMHRSI 328
Query: 298 FPGSATY---NTFRSCTNPHCFELDN--VRFLGTSGQTIDDLQKY------SEANDQLEF 346
F S Y + R TNP E +N +RFLGTSGQ I D++KY + + +
Sbjct: 329 FQRSKQYVNSPSLRILTNPAWMEFENSGLRFLGTSGQNISDIRKYLTKDIATSPDIDMCI 388
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFETRLL-------- 397
ME T++W+++ PTAP+TL CYPF + DPF LV PHVYFA NQ F + +
Sbjct: 389 MENTVKWQNIVPTAPDTLYCYPFDNSDPFTLVTETPHVYFAANQSSFSCKTITLPHTEQS 448
Query: 398 -KGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
K + V L+ IP FS TG V+++L++L C +S
Sbjct: 449 NKNTHDASVTLITIPSFSATGQIVLLDLQSLTCEAISIS 487
>gi|119177185|ref|XP_001240404.1| hypothetical protein CIMG_07567 [Coccidioides immitis RS]
Length = 542
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 160/495 (32%), Positives = 238/495 (48%), Gaps = 93/495 (18%)
Query: 28 KETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMK 87
K + QQY+ IYF RL ++ + + E G C ++GT+Y +
Sbjct: 42 KTRHYQQQYADIYFLRLARLKPAVAEIA---------AAEWEEFTGELCWVVGTVYMDLP 92
Query: 88 LKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVTGI 143
LKP+ILD+ SKE T ++ P + +LED SGR++L G L + VTG
Sbjct: 93 LKPNILDDISKEHWTAAPPSRKTYLDPSNQGGTQTMLEDGSGRLRLTGTLLQSALLVTGA 152
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQ--------------------KELPLNSGEDKYV 183
VVA+ G E + G+F V+DV LAPQ E P++ G K +
Sbjct: 153 VVAVLGTENANGDFEVVDVKVPDLAPQPARWESQYADSASGKRKRSPSETPVD-GPRKKI 211
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGH------LGDEKEQGIAAEIVHVVIAGNSI--E 235
L+SGL + + + + LL D++ G+ +G +A+I ++IAGNS+
Sbjct: 212 ALLSGLGITGTSGDTVALTLLTDYLLGYGEGYGNVGTGSSPIRSAQISRLIIAGNSLGSS 271
Query: 236 IPRGLLNGQNLASKDQSRLFE------------PIKELDILLTQIAAGVPLDIMPGPNDP 283
+P L A+ + R + PI LD L +I +P+ IMPG NDP
Sbjct: 272 VPPSLEEQDEDAAVKKRRQAKKYGYDASAYNASPITHLDNFLAEILPSIPVTIMPGENDP 331
Query: 284 ANFSLPQQPLNRCLFPGSATYNT---------------FRSCTNPHCFELDNVRFLGTSG 328
ANF+LPQQ ++R + P S Y + + TNP +++ R G SG
Sbjct: 332 ANFALPQQEIHRAMLPRSRNYCSAPRLGIDEPPSEPGWLDTVTNPWQGDVEGWRLWGCSG 391
Query: 329 QTIDDLQKYS-------------EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPF 375
Q +DD+ +Y E + +L ME LRWR PTAP+T+ CYPF D DPF
Sbjct: 392 QNVDDVLRYMYLDDDQTGNGQDIEGDTRLRLMEAMLRWRCAVPTAPDTIWCYPFQDNDPF 451
Query: 376 LVESCPHVYFAGNQQKFETRL-----------LKGSDRQLVRLVCIPKFSETGVAVVVNL 424
++++CPHV+F GNQ F T + ++G VRL+ +PKF ETG V+++
Sbjct: 452 VLQACPHVFFTGNQPAFRTTVIEKSVSASSMDIEGDQPSKVRLLALPKFRETGELVLLDA 511
Query: 425 KNLECHTLSFGTQFS 439
+ LE + FGT S
Sbjct: 512 ETLEVEVVKFGTWQS 526
>gi|412985302|emb|CCO20327.1| predicted protein [Bathycoccus prasinos]
Length = 563
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 170/517 (32%), Positives = 245/517 (47%), Gaps = 111/517 (21%)
Query: 24 FEIQKETYRGQQYSQIYFARLH-LMRALLYSLVPNWKPHLPICTVLEL---------EEG 73
F +KE + G+QYS +Y+ RL L+ L S + +P+ V+EL E+G
Sbjct: 47 FRFEKE-HMGKQYSSLYYQRLMVLLPGLKQSAREKFGTSVPLKRVIELGAAGTDNNKEDG 105
Query: 74 R---------------------------------------ECVIIGTLYKHMKLKPSILD 94
+ E VIIGT+YK M KP ILD
Sbjct: 106 KGGGEKKESSAMMMMDVDDEDTLLQEQENKENKAAAALGEEVVIIGTIYKEMAKKPIILD 165
Query: 95 EYSKERS--TTPLVKPHNFM--------HPDDHLVLEDESGRVKLGGAELLPSAYVTGIV 144
EY K ++ T H M D +LEDES RVKL G + VTG+
Sbjct: 166 EYIKTKAGVTKKEQVEHGLMDLEENFVDEEKDFCILEDESARVKLQGPGVKVGELVTGVS 225
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLN------SGEDKYVVLVSGLNVGSGTSNP 198
A G+ + G+F+V V A + + SGE YV LVSGLN G+ N
Sbjct: 226 AACKGRVNNNGDFVVDSVAFAKPSSSAKSTTKVTEEDESGEQTYVCLVSGLNFGASPLND 285
Query: 199 LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI-------------PRGLLNGQN 245
++ +L ++I G LGDE++ G I V++ G + + NG+
Sbjct: 286 VRAIMLSEYIEGSLGDEEQAG---GISQVLVCGELVSSKTREEERVQGEKGAKATTNGEG 342
Query: 246 LASKDQSR--LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
D + I++ D L ++ VP+D+MPG +DP N +LPQQP++ C P +A
Sbjct: 343 GTHADTKKKATSSSIQKADAFLAKVCEMVPVDLMPGSSDPTNSALPQQPIHSCFLPNAAR 402
Query: 304 Y--NTFRSCTNPHCFELD-----------NVRFLGTSGQTIDD-LQKYS----------- 338
+ +T + TNPH F++ + FLGTSGQ + D LQ S
Sbjct: 403 FEGSTLKKVTNPHEFQITPSSDDASTSSSSRTFLGTSGQNVRDCLQITSSGVGIKGKTPE 462
Query: 339 -EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLL 397
+A L+ MER L W H+AP+AP+TL CYPF DRDPF++ P V+FAG Q F +R +
Sbjct: 463 EKAKAVLDVMERFLEWGHMAPSAPDTLACYPFKDRDPFVITQVPDVFFAGCQSAFGSREI 522
Query: 398 KGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+ ++ V LV +P FSETG V++NLK L+ ++F
Sbjct: 523 VVASQKSV-LVSVPSFSETGSVVLLNLKTLKAEEVTF 558
>gi|50285409|ref|XP_445133.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524436|emb|CAG58033.1| unnamed protein product [Candida glabrata]
Length = 479
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 221/404 (54%), Gaps = 47/404 (11%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDES 124
VL+++ C IGT+Y+ MK KP++L+E + T + P ++ PD D ++LEDES
Sbjct: 88 VLDIQGKEPCWCIGTIYREMKYKPNVLEEVMNDTYGTVDINPESYTDPDGTDEIMLEDES 147
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVV 184
GR+ L G + + ++TG V+ + G E AG F VLD+ PQ+ +P + + K +
Sbjct: 148 GRLILVGDMIAETPFITGTVIGVLGMEADAGTFQVLDLCYPKALPQEPMPAATSKGK-IA 206
Query: 185 LVSGLNVGS-GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG 243
LVSG+N+ + ++ QLL +++ G LG+E+ A+I ++I G+SI+
Sbjct: 207 LVSGINISTTAQERVIKLQLLQEYLMGRLGNEEA---VAQIGRLLICGDSIDF------- 256
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP---- 299
N +S+D L + E L + +DIMPG NDP++ +LPQQPL++ LF
Sbjct: 257 -NPSSEDPGALVNKLDEFGKFLGNTLQSISIDIMPGANDPSDRTLPQQPLHKALFRENLG 315
Query: 300 ---GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---------------SEAN 341
N TNP+ F ++ + L T+GQ I D+ KY ++
Sbjct: 316 QYFDKVNANLLNLVTNPYVFSINGLELLTTAGQNITDICKYVIPAKSDTESTTNVSTDDT 375
Query: 342 DQ---------LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKF 392
D L+ ME TL+W+++APTAP+TL CYP+ DRDPF++ PHVY GNQ F
Sbjct: 376 DAKCAKTTEHILDLMECTLKWQNIAPTAPDTLWCYPYKDRDPFILNKWPHVYIVGNQPYF 435
Query: 393 ETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
TR + ++V ++ +P FSETG V+++L++L ++ G+
Sbjct: 436 GTRKVSLDGVEVV-MISVPTFSETGQIVLLDLEDLSTEVVTIGS 478
>gi|367025627|ref|XP_003662098.1| hypothetical protein MYCTH_2302249 [Myceliophthora thermophila ATCC
42464]
gi|347009366|gb|AEO56853.1| hypothetical protein MYCTH_2302249 [Myceliophthora thermophila ATCC
42464]
Length = 501
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 252/481 (52%), Gaps = 61/481 (12%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWK-------PH 61
L+R ++ Y LD F + K+ QQ++ IYF RL ++ + + W+
Sbjct: 24 LERSESNYKSLDN-FALPKDRQYQQQFADIYFLRLAKIKPAVEEVASAAWEGTELGGETA 82
Query: 62 LPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPD-DHLV 119
+ VL++ +G+ C + GT+Y M LKPS+L++ +K+R + P H + + ++
Sbjct: 83 TKVDRVLDVRQGQLCWVAGTIYMDMPLKPSVLEDVAKDRWISAPTTADHYYSEAGGESIM 142
Query: 120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-----P 174
LED+SGR++L G L VTG ++A+ G E GEF V+D+ A L PQ + P
Sbjct: 143 LEDDSGRIRLVGDVLKSYFLVTGCIIAVMGTENVNGEFEVIDLKFADLPPQPDRWALSKP 202
Query: 175 LNSG--------ED---------KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEK 216
S ED K + +VSGL G+ TS ++ LL++ + G D
Sbjct: 203 AGSASKKTKVKDEDVEMADSQPSKKIAIVSGLEFSGTDTSYAMELDLLLEFLLGEALDPA 262
Query: 217 EQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ---------SRLFEPIKE--LDILL 265
Q A I ++IAGNSI P + + A +D+ + + P+ LD L
Sbjct: 263 AQSELAHISRLIIAGNSIAKP----SEHDAADRDKKGHKKYGYDASSYNPVPSQLLDTFL 318
Query: 266 TQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT------------FRSCTNP 313
+ + +P+ ++PG +DPAN S PQQP++ + P + TY + TNP
Sbjct: 319 STLLPTIPVTLLPGAHDPANASYPQQPIHSAMLPTARTYTSPPGQSREEQPGWLDPVTNP 378
Query: 314 HCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
E++ R LGTSGQ +DD+ KY + +D+L ME RWR APTAP+TL YPF + +
Sbjct: 379 WEGEIEGWRVLGTSGQNLDDICKYVDNSDRLGMMEAMCRWRCSAPTAPDTLWAYPFQEDE 438
Query: 374 PFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLS 433
PF+++ CPH+YF G Q +F T++++G Q+VRLV +P F+ T V+++ + L+ +
Sbjct: 439 PFVMKECPHLYFVGCQPEFGTKVIEGPQGQMVRLVLVPSFAATKEIVLIDTETLDVSKVK 498
Query: 434 F 434
Sbjct: 499 I 499
>gi|400602313|gb|EJP69915.1| DNA polymerase alpha/epsilon subunit B [Beauveria bassiana ARSEF
2860]
Length = 524
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 156/485 (32%), Positives = 236/485 (48%), Gaps = 76/485 (15%)
Query: 27 QKETYRGQQYSQIYFARLHLMR-ALLYSLVPNW-------KPHLPICTVLELEEGRECVI 78
Q+ +Y+ QQY +YF RL ++ A+ W + + VL++ +G C +
Sbjct: 40 QQRSYQ-QQYGDMYFLRLTKIKPAVEEVAAAAWDGTTVGGETAKKVDRVLDVRQGELCWV 98
Query: 79 IGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAELLP 136
GT+Y M LKP+IL++ SK+R + + + D D + LED+SGRV+L G L
Sbjct: 99 AGTVYMDMALKPNILEDVSKDRWLSAPISTQKYYSDDGSDQVTLEDDSGRVRLIGDILKT 158
Query: 137 SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG------------------ 178
VTG ++A+ G E ++GEF VLD+ L PQ + SG
Sbjct: 159 VPLVTGCIIAVMGTENTSGEFEVLDLKLPDLPPQPDRWALSGGAKANGKHKKQQDTDMTD 218
Query: 179 ---------EDKYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
K + +VSGL+ G+ S ++ LL++++ G Q + I ++
Sbjct: 219 ADAPSTTTTTHKQIAIVSGLSFSGADASAAVEVNLLLEYLLGESLSADAQSQVSHISRLI 278
Query: 229 IAGNSIEIPRGLLNGQNLASKDQSRLFE-------------------PIKELDILLTQIA 269
IAG+SI K + P + D ++++
Sbjct: 279 IAGDSISSATTTTTADEDEKKKTTAASASASASSKKYGYDASAYNALPSQLFDEFVSELL 338
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT------------------FRSCT 311
+P+ ++PG DPAN S PQQPL+ LFP + Y F S T
Sbjct: 339 PSLPVTLLPGARDPANASYPQQPLHTALFPLARAYGADPTTTTTSKAGGGGVPGWFDSVT 398
Query: 312 NPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTD 371
NP E+D R LGT GQ +DD+ KY ++ D+L ME RWR APTAP+TL YPF D
Sbjct: 399 NPWEAEVDGWRVLGTGGQNVDDVFKYVDSEDRLGMMEAMCRWRCCAPTAPDTLWSYPFQD 458
Query: 372 RDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHT 431
DPF++++CPH+YF GNQ +F TR++ G D Q VRLV +P F+ + V+V+++ LE
Sbjct: 459 DDPFVLKACPHLYFVGNQPEFGTRVIDGPDGQSVRLVAVPSFAASKEIVLVDMETLEVTK 518
Query: 432 LSFGT 436
+ T
Sbjct: 519 VKIET 523
>gi|367005664|ref|XP_003687564.1| hypothetical protein TPHA_0J03100 [Tetrapisispora phaffii CBS 4417]
gi|357525868|emb|CCE65130.1| hypothetical protein TPHA_0J03100 [Tetrapisispora phaffii CBS 4417]
Length = 468
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 242/460 (52%), Gaps = 48/460 (10%)
Query: 3 IDGEEARLQRK--QATYIFLDEPFEIQKETYRG-QQYSQIYFARLHLMRALLYS-LVPNW 58
ID + LQR + Y F DE F + + Y QY + Y RL +++ + + W
Sbjct: 13 IDTKFNILQRASIEQDYKF-DEHFSVDLKDYDSCGQYYKFYQTRLRVLKERTRNQCLKKW 71
Query: 59 KPHLPIC--------TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPH 109
+ VL+++ + C IGT+Y MK KP++L+E + P L+K +
Sbjct: 72 DAGFKLNGKTVVEKKKVLDIQANQPCWCIGTIYCEMKYKPNVLEEVVNDTYGAPDLLKSY 131
Query: 110 NFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
D ++LEDESGRV L G L + +VTG VV L G E AG F +LD+ P
Sbjct: 132 TDPDGTDEIMLEDESGRVLLVGDFLQSTPFVTGTVVGLLGMEAEAGTFQILDICYPSEVP 191
Query: 170 QKELPL-NSGEDKYVVLVSGLNVGSGT-SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
QKE + S E+KY+ LVSGLNV + N ++ QLL + + G L +EK + I +
Sbjct: 192 QKEYQVPTSDEEKYIALVSGLNVSTNNPENLIKLQLLQELLMGRLQNEKS---ISNIGKL 248
Query: 228 VIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFS 287
+I G SI+ + N Q + E + L +P+ IMP +DP++ +
Sbjct: 249 LICGGSIDPSKNNSNSQ--------KTMESLITFGNFLGNTLQSLPISIMPSTSDPSDKA 300
Query: 288 LPQQPLNRCLFP-------GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY--- 337
LPQ+P N+ LF + + TNP +E + +R L TSG+ I D+ +Y
Sbjct: 301 LPQRPFNKILFSELLKPYFADISRDLLHLATNPSIYEFNGIRILATSGENISDICRYVIP 360
Query: 338 --SEAND--------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG 387
S N+ +L+ ME TL+W+++APT P+TL YPF D+DPF++ PHVY AG
Sbjct: 361 GNSSENESKLNSVEHRLDLMECTLKWQNVAPTIPDTLWAYPFIDKDPFILNEMPHVYIAG 420
Query: 388 NQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
NQ +F TR ++ +++ V+L+C+P+F+++ V +NLK L
Sbjct: 421 NQPRFGTRDIELYNKK-VKLICLPEFNKSSSLVTLNLKTL 459
>gi|410083373|ref|XP_003959264.1| hypothetical protein KAFR_0J00610 [Kazachstania africana CBS 2517]
gi|372465855|emb|CCF60129.1| hypothetical protein KAFR_0J00610 [Kazachstania africana CBS 2517]
Length = 481
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 155/446 (34%), Positives = 240/446 (53%), Gaps = 51/446 (11%)
Query: 31 YRGQQYSQIYFARLHLMRALL-YSLVPNWKPHL-----PIC---TVLELEEGRECVIIGT 81
Y Q YS IY RL++++ + W H P+ VL++E C IGT
Sbjct: 43 YSNQFYS-IYQHRLNVLKERVEKECNKRWDDHFRLNGRPVMRKNKVLDIEGNEPCWCIGT 101
Query: 82 LYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140
+Y MK KP+IL+E + P L K + D ++LEDESGRV L G + + ++
Sbjct: 102 IYCEMKYKPNILEEVINDTYNAPDLAKSYTDPEGSDEIMLEDESGRVLLVGDFIRQTPFI 161
Query: 141 TGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP----LNSGEDKYVVLVSGLNVGSGTS 196
TG VV L G E AG F VLD+ Q+ LP L + + + LVSGLN+ + T
Sbjct: 162 TGAVVGLLGMEADAGTFQVLDICYPSPLIQRPLPSKDNLEMMKGQKIALVSGLNLTTTTP 221
Query: 197 NP-LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLF 255
+ ++ QLL + + G+L + + ++I ++I GN +E LN + Q +L
Sbjct: 222 DRVMRLQLLQEFLIGNLYNTSK---VSQIGKLIICGNLVEFD---LNDDRETA--QGKLS 273
Query: 256 EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS-------ATYNTFR 308
E + E L + +DI+PG NDP++ +LPQQPL++ LF GS YN
Sbjct: 274 ENLDEFGNFLANTLQSISIDILPGRNDPSDRTLPQQPLHKALFNGSIKKYIENVDYNILS 333
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKY-----------SEAND---------QLEFME 348
TNP+ F+ + + L TSGQ+I+D+ KY EA+D +L+ ME
Sbjct: 334 LVTNPYQFDFNGWQMLATSGQSINDICKYIMPYKKQDTEDDEASDISSHDSLENRLDLME 393
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
TL+W+++APTAP+TL CYP+ + DPF+++ PH+Y GNQ +F +R K S+ ++++
Sbjct: 394 CTLKWQNIAPTAPDTLWCYPYKNNDPFILKEWPHLYVIGNQPEFGSRETKMSNGAKIKII 453
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSF 434
+P+FSETG V++++ LE +S
Sbjct: 454 SVPEFSETGKIVLLDMSTLEVELVSI 479
>gi|315045352|ref|XP_003172051.1| DNA polymerase subunit delta-2 [Arthroderma gypseum CBS 118893]
gi|311342437|gb|EFR01640.1| DNA polymerase subunit delta-2 [Arthroderma gypseum CBS 118893]
Length = 552
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 157/491 (31%), Positives = 243/491 (49%), Gaps = 89/491 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-PNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQYS IYF RL ++ + + W+ + + VL++ +G ++GT+Y
Sbjct: 46 QQYSDIYFLRLTRLKPAVAEVARAAWEGYNIAGEYARRVDRVLDVRQGELSWVVGTVYME 105
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ LKPSI+D+ SKE T V + P+ ++EDESGR+ L G+ L S VT
Sbjct: 106 LPLKPSIMDDISKENWTAAPVPQKTYNDPNSKKPTQTMVEDESGRLVLTGSLLQSSFLVT 165
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQK---ELPLNSGED------------------ 180
G+VVA+ G E + GEF V+D+ L PQ E S D
Sbjct: 166 GVVVAVLGTENADGEFEVVDIKVPDLPPQPGRWEREQESTTDGVPAKRKHTALEAGGGSG 225
Query: 181 ----KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG-----DEKEQGIAAEIVHVVIAG 231
K + VSGL + + + + LL D++ G+ G ++ +I +VIAG
Sbjct: 226 PGKGKKIAFVSGLGITGTSGDTVALSLLADYLLGYTGSIPSTEDFTSTSPPQISRLVIAG 285
Query: 232 NSI--EIPRGLLNGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGP 280
NS+ ++ + + N + K Q + + PI D L+ I +P+ +MPG
Sbjct: 286 NSLGAKVASTVDDAAN-SEKRQPKKYGYDASAYNASPITLFDGFLSDILPSIPVTLMPGE 344
Query: 281 NDPANFSLPQQPLNRCLFPGSATY---------------NTFRSCTNPHCFELDNVRFLG 325
DPANFSLPQQ ++ + P S Y + TNP +++ RF G
Sbjct: 345 TDPANFSLPQQEIHTAMLPRSKAYCAPVAPKLQAIPYEPGWLDNVTNPWEGDIEGWRFWG 404
Query: 326 TSGQTIDDLQKY-------------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDR 372
+SGQ +DD+ +Y ++ +L+ ME L+WR PTAP+T+ CYPF D+
Sbjct: 405 SSGQNVDDILRYVSLEELEDDEDEDTQNGVRLKLMEHMLKWRCGVPTAPDTIWCYPFQDK 464
Query: 373 DPFLVESCPHVYFAGNQQKFETRLLKGSDRQL-------VRLVCIPKFSETGVAVVVNLK 425
DPF+++SCPHV+FAGNQ F++ +++G D VRL+ +PKF ETG V+++ +
Sbjct: 465 DPFVIQSCPHVFFAGNQPCFQSTVIEGGDWGTEDDSITKVRLIALPKFHETGEIVLLDTE 524
Query: 426 NLECHTLSFGT 436
L + FGT
Sbjct: 525 TLSVEVVKFGT 535
>gi|327304261|ref|XP_003236822.1| DNA polymerase delta subunit [Trichophyton rubrum CBS 118892]
gi|326459820|gb|EGD85273.1| DNA polymerase delta subunit [Trichophyton rubrum CBS 118892]
Length = 552
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 240/490 (48%), Gaps = 87/490 (17%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-PNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQYS IYF RL ++ + + W+ + + VL++ +G+ I+GT+Y
Sbjct: 46 QQYSDIYFLRLTRLKPAVAEVAKAAWEGYNIAGEYARRVDRVLDVRQGKLSWIVGTVYMD 105
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ LKPSI+D+ SKE T V + P+ ++EDESGR+ L G+ L + VT
Sbjct: 106 LPLKPSIMDDISKENWTAAPVPQKTYNDPNSKKPTQTMVEDESGRLVLTGSLLQSTFLVT 165
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQ-------KELPLNSG---------------- 178
G+VVA+ G E + G+F V+D+ + PQ +E + G
Sbjct: 166 GVVVAVLGTENADGQFEVVDIKVPDIPPQPARWEREQEPTTDVGVPAKRKHSALEAGGSG 225
Query: 179 --EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG-----DEKEQGIAAEIVHVVIAG 231
+ K + VSGL + + + + LL D++ G+ G D+ ++I ++IAG
Sbjct: 226 SGKSKKIAFVSGLGITGTSGDTVALSLLADYLLGYTGTIPSTDDYTSTNPSQISRLIIAG 285
Query: 232 NSIEIP-RGLLNGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPN 281
NS+ N K Q + + PI D L+ I +P+ +MPG
Sbjct: 286 NSLGAKVASTANDAANPEKRQPKKYGYDASAYNASPITLFDSFLSDILPSIPVTLMPGET 345
Query: 282 DPANFSLPQQPLNRCLFPGSATY---------------NTFRSCTNPHCFELDNVRFLGT 326
DPANFSLPQQ ++ + P S Y + TNP +++ RF GT
Sbjct: 346 DPANFSLPQQEIHTAMLPRSKAYCPPIAPKRQALPSEPGWLDNVTNPWEGDIEGWRFWGT 405
Query: 327 SGQTIDDLQKYSEA-------------NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
SGQ +DD+ +Y +L+ ME L+WR PTAP+T+ CYP+ D+D
Sbjct: 406 SGQNVDDVLRYVNLEELEDDEVEDIENGARLKLMEHLLKWRCGVPTAPDTIWCYPYQDKD 465
Query: 374 PFLVESCPHVYFAGNQQKFETRLLKGSDRQL-------VRLVCIPKFSETGVAVVVNLKN 426
PF+++SCPHV+F GNQ +F++ +++G D VRL+ +PKF ETG V+++ +
Sbjct: 466 PFVIQSCPHVFFTGNQPRFQSTIIEGGDWGTAEDSITKVRLIALPKFHETGEIVLLDTET 525
Query: 427 LECHTLSFGT 436
L + FGT
Sbjct: 526 LAIEVVKFGT 535
>gi|255723331|ref|XP_002546599.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240130730|gb|EER30293.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 477
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 220/392 (56%), Gaps = 28/392 (7%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C ++GT+Y K K +ILD+ K P +M D+ ++LEDES
Sbjct: 88 ILDITSGKLCWVVGTVYCDAKYKLNILDDVEKGTDDVMPPVPVTYMDGDESPIMMLEDES 147
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
GR L E L + VTG +VA+ G E AG F ++DV+ APQK LP S +
Sbjct: 148 GRAILHNDEYLKKNLLVTGCIVAVLGMELQAGIFEIMDVVYPECAPQKPLP--SSPSGKI 205
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP------ 237
LVSGLN+G + L+ +LL ++ G +G+ ++ ++ I ++IAGNSI +P
Sbjct: 206 ALVSGLNIGEESHYDLKLELLKQYLIGEVGNFDDKSNSSTISQLIIAGNSI-MPIENLSA 264
Query: 238 ----RGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
+ + N SK+ S+ E +K+LDI L I +P+ +MPG +DPA LPQQ
Sbjct: 265 EMDLKNYITTNNYGSKNISKYNAESLKQLDIFLKDILVSLPVAVMPGDHDPAEVCLPQQA 324
Query: 293 LNRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY------SEANDQ 343
L++ LF + + TNP E++ VR LGTSGQ +DD+ +Y S +
Sbjct: 325 LHKMLFRTNKALLGSDRLIRTTNPQWMEVNGVRMLGTSGQNVDDVMRYIPDTNGSISPTS 384
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL-VESCPHVYFAGNQQKFETRLLKGSDR 402
++ ME ++W++ APT P+TL CYP+ + DPF+ E PHVYF GNQ+K++ + L +
Sbjct: 385 IQVMESNIKWQNFAPTCPDTLYCYPYDNYDPFIFAEELPHVYFVGNQKKYDFKKL-AYEG 443
Query: 403 QLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+ V L+ +P F E+G V+++L LE ++
Sbjct: 444 KTVSLISVPNFKESGEIVLLDLNTLETEVVTI 475
>gi|340522408|gb|EGR52641.1| hypothetical protein TRIREDRAFT_102401 [Trichoderma reesei QM6a]
Length = 504
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/471 (33%), Positives = 243/471 (51%), Gaps = 58/471 (12%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKP-------HLPICTVLELEEGRE 75
+ + K QQY +YF RL ++ + + W+ + VL++ +G
Sbjct: 35 YALDKNRSYKQQYGDMYFLRLAKIKPAVEEVAAKAWQDTQIGGERAKRVDRVLDVRQGEL 94
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAE 133
C + GT+Y MKLKP+IL++ SK+R + + + D D +LED+SGRV+L G
Sbjct: 95 CWVAGTVYMDMKLKPNILEDVSKDRWLSAPISSQKYYSDDGSDQTMLEDDSGRVRLVGDL 154
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE------LPLNSG----ED--- 180
L VTG ++A+ G E + GEF V+D+ LAPQ E P G ED
Sbjct: 155 LSTIPLVTGCIIAVMGTENTHGEFEVIDIKVPDLAPQPERWALSKAPSAGGKAKSEDTEM 214
Query: 181 ---------KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIA 230
K + +VSGL+ G+ S L+ LL++++ G EQ ++I ++IA
Sbjct: 215 TDSPSEGGGKKIAIVSGLSFSGTDASYDLELNLLLEYLLGEALGPGEQAGVSQISRLIIA 274
Query: 231 GNSIEIPRGLL----------NGQNLASKDQSRLFEPIKE--LDILLTQIAAGVPLDIMP 278
G+SI + Q D S + PI D L+++ +P+ ++P
Sbjct: 275 GDSISMTAAKDTDDDDDEVKKRAQKKYGYDAS-AYNPIPSQLFDEFLSELLPSIPVTLLP 333
Query: 279 GPNDPANFSLPQQPLNRCLFP------------GSATYNTFRSCTNPHCFELDNVRFLGT 326
G DPAN S PQQP++ +FP ++ F + TNP E++ R LGT
Sbjct: 334 GAQDPANASYPQQPIHTAMFPISRAYAADAAAASASQPGWFDTVTNPWEAEVEGWRVLGT 393
Query: 327 SGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
GQ +DD+ KY E++D+L ME RWR APTAP+TL YPF + DPF+++SCPHVYF
Sbjct: 394 GGQNVDDVFKYVESDDRLGMMEAMCRWRCCAPTAPDTLWSYPFQEDDPFVLKSCPHVYFV 453
Query: 387 GNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
G Q +F T+++ G D Q VRL+ +P FS++ V+V+ + LE + ++
Sbjct: 454 GCQPEFATKVIHGPDGQSVRLIAVPSFSKSKEFVLVDTETLEVSKVRITSR 504
>gi|448121642|ref|XP_004204261.1| Piso0_000093 [Millerozyma farinosa CBS 7064]
gi|358349800|emb|CCE73079.1| Piso0_000093 [Millerozyma farinosa CBS 7064]
Length = 493
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 221/401 (55%), Gaps = 31/401 (7%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLED 122
+L++ G+ C ++GT+Y MK K +IL + P +++ + +++ED
Sbjct: 93 ILDISSGQLCWVVGTIYTEMKNKLNILQDVEMGVDDVLPEIPESYVDQESDEMPIVMIED 152
Query: 123 ESGRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
ESGR L + L + VTG +VA+ G E AG F ++DV+ ++PQK LP S + +
Sbjct: 153 ESGRAVLHNDDFLKKNILVTGCIVAILGIEIQAGIFEIMDVVYPAMSPQKPLPPPSDQPR 212
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI---PR 238
+ VSGLN+ ++ L +LL ++ G LG + ++ A+I H+V+AG+SI
Sbjct: 213 KIAFVSGLNLRDYANSELSVELLKQYLAGELGSDADKEYVAQISHLVMAGDSISCINTSD 272
Query: 239 GLLNGQNLASKDQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
+ N SK+ S+ E ++ D + + +P+ +MPG NDPA LPQQ ++R +
Sbjct: 273 NDNSNNNYGSKNTSKFSPESLELFDQFIQSVLPSMPISVMPGLNDPAEICLPQQKMHRSI 332
Query: 298 FPGSATY---NTFRSCTNPHCFELDN--VRFLGTSGQTIDDLQKY------SEANDQLEF 346
F S Y + R TNP E +N +RFLGTSGQ I D++KY + A+ +
Sbjct: 333 FHKSKQYVNSPSLRILTNPAWIEFENSGLRFLGTSGQNISDIRKYLTKDIATSADIDMRI 392
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFETRLL-------- 397
ME T++W+++ PTAP+TL CYPF + DPF LV PHVYFA NQ F + +
Sbjct: 393 MENTVKWQNIVPTAPDTLYCYPFDNSDPFTLVTETPHVYFAANQSSFSCKTITLPHTEQS 452
Query: 398 -KGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLS-FGT 436
K + V L+ IP FS TG VV++L++L C +S F T
Sbjct: 453 NKNTQDSTVTLITIPCFSTTGQIVVLDLQSLTCEAISIFAT 493
>gi|332020437|gb|EGI60857.1| DNA polymerase delta subunit 2 [Acromyrmex echinatior]
Length = 447
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 241/453 (53%), Gaps = 20/453 (4%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWK 59
ME+D + + RK ++ L F++ + Y + IY ARL+ +R L+ W
Sbjct: 1 MEVD-DSSEYDRKIVSFKDLGR-FKLTERRYNDNSLN-IYTARLNDLREDTLHRAKLKWT 57
Query: 60 PHLPI-CTVLELEEG-RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH 117
+ + + L LE + ++IG LYK +LKPS+L + SKE + +N+ DD
Sbjct: 58 DYQHVEVSRLSLESSEKSYILIGVLYKDQRLKPSLLRDLSKELQLEAQLS-NNYASIDDQ 116
Query: 118 LVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAG--LAPQKELPL 175
L LEDE+ RVKL G + VTG+V A+ G E G FLV D G L P +
Sbjct: 117 LFLEDETLRVKLVGNHMDIQEVVTGLVCAVLGHELENGTFLVEDWCFPGYYLKPSS-VSS 175
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
+ ED ++L+SGL++ + T + LL + ITG +G Q A I V+IAGNSI
Sbjct: 176 SLVEDGKILLISGLDLVNNT-DKFSLDLLSEWITGMVGCTNVQKEEATIAKVIIAGNSIR 234
Query: 236 IPRGLLNGQ---NLASKDQSRLFEPI---KELDILLTQIAAGVPLDIMPGPNDPA-NFSL 288
+ + + + S DQ ++ E + +LD L+ I + +MPG DP N+S+
Sbjct: 235 SSTKIYSHKGYHEIKSHDQLKIKEDVMAMHKLDAFLSNILNYCCVVLMPGEFDPTCNYSM 294
Query: 289 PQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN--DQLEF 346
PQQP + C S + + TNP + G+ G+ I D+ K + + LE+
Sbjct: 295 PQQPFHPCTLEKSVRFKSLHGATNPWIANIGGRVVAGSCGEPIMDIMKIAGLSPLSSLEW 354
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVR 406
+ERTL WRH PT P+TL YPF DPF++ P +YFAGN +++T+L+ + VR
Sbjct: 355 LERTLIWRHYTPTGPDTLPIYPFFKNDPFVINEWPDIYFAGNMDEYDTKLVTVDEEHAVR 414
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS 439
LVCIPKFSET AV+VNL++L +SFG + +
Sbjct: 415 LVCIPKFSETKTAVLVNLQDLTTQPISFGDRLT 447
>gi|380018443|ref|XP_003693138.1| PREDICTED: DNA polymerase delta small subunit-like [Apis florea]
Length = 420
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 155/438 (35%), Positives = 230/438 (52%), Gaps = 31/438 (7%)
Query: 6 EEARLQRKQATYIFLD-EPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPI 64
E + + + ++ F D + FEI + + QQY IY ARL ++ + V H I
Sbjct: 2 EVPQFKYNRKSFKFDDFKKFEIFTQCSK-QQYCNIYNARLKALKDHILQKVKIKWAHYEI 60
Query: 65 CTVLELEEGRE---CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLE 121
++ +L E + CVIIGTLYKH +L+PSIL+E S+E P N+ D L LE
Sbjct: 61 VSLSQLCERNQNNTCVIIGTLYKHQELRPSILNELSEELQLIPQPARINYASFKDILYLE 120
Query: 122 DESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG--- 178
DE+ R+KL G + VTGIV A+ G E G FLV D G P+ + LNS
Sbjct: 121 DETLRIKLVGTHINIQDIVTGIVCAVCGHELETGAFLVTDWCFPGCCPKLSI-LNSQLLE 179
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR 238
+ ++++SGL++ + + L LL + ITG +G E+ A IV ++IAG
Sbjct: 180 KQGKILIISGLDLANNLQS-LSINLLFEWITGMIGCEEVHKEVASIVCIIIAG------- 231
Query: 239 GLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
++ N+ K LD L IA P+ +MPG DP LPQQP + C+
Sbjct: 232 -IVKTANVTHK-----------LDNFLYPIAQCCPILLMPGEFDPTCHRLPQQPFHPCIL 279
Query: 299 PGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWRHL 356
P + +F TNP +++ G+SGQ I D+ K + D L ++ERTL W H
Sbjct: 280 PECSRVKSFYGVTNPWVGSINSRIIAGSSGQPIMDIMKIAGLVDISPLIWLERTLLWCHY 339
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
APTAP+ Y + DPF++ CP +YF GN K++T++ + Q +RL+ IPKFS+T
Sbjct: 340 APTAPDATPTYSSSKIDPFIITECPDIYFVGNMDKYDTKIYTAEEGQTIRLISIPKFSKT 399
Query: 417 GVAVVVNLKNLECHTLSF 434
V+V+L++L +SF
Sbjct: 400 QTGVLVDLQDLNTWPISF 417
>gi|403214436|emb|CCK68937.1| hypothetical protein KNAG_0B05030 [Kazachstania naganishii CBS
8797]
Length = 477
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 221/397 (55%), Gaps = 42/397 (10%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESG 125
VL+++ C +GT+Y MK KP+IL+E + P LVK + +D ++LEDESG
Sbjct: 88 VLDIQGREPCWCVGTIYCEMKYKPNILEEVVNDTYGVPDLVKSYTDPQGEDEIMLEDESG 147
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVL 185
RV L G + + ++TG VV + G E G F VLD+ PQ LP ED+ + L
Sbjct: 148 RVILVGEYIRTTPFITGTVVGILGMEADPGTFQVLDICYPSALPQIPLPHPVSEDRKIAL 207
Query: 186 VSGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ 244
VSGLN+ + + + ++L +++TG+L D+ E +EI +++ GNS+E
Sbjct: 208 VSGLNINTTQPTRITRLKMLQEYLTGYL-DKTE--YVSEISRLIVCGNSVEF-------- 256
Query: 245 NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSA-- 302
++ +L + ++E L + +P+D+MPG NDP++ SLPQQPL+ LF S
Sbjct: 257 QTDDAERGKLTKCLEEFGTFLRNVLPSIPVDVMPGANDPSDKSLPQQPLHTALFDESMRP 316
Query: 303 -----TYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY------------SEANDQ-- 343
TNP F L+ L SGQ+I+D+ KY SEA+ +
Sbjct: 317 YFSAENRQLLNLMTNPCSFSLNGWDVLAMSGQSINDICKYIIPYTKEGSDPNSEASSETM 376
Query: 344 --------LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
L+ ME T++W+++APTAP+TL CYP+ + DPF+++ PHVY GNQ +F +R
Sbjct: 377 PTDTTEHRLDLMECTMKWQNIAPTAPDTLWCYPYKNDDPFILKRWPHVYCVGNQPEFGSR 436
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
++ ++ ++++ IP+FS TG V++NLK+L+ +
Sbjct: 437 VITMNNGAKIKMIAIPEFSTTGKIVLLNLKSLDTEVV 473
>gi|150863804|ref|XP_001382402.2| DNA polymerase delta small subunit (Hydroxyurea sensitive protein
HYS2) [Scheffersomyces stipitis CBS 6054]
gi|149385060|gb|ABN64373.2| DNA polymerase delta small subunit (Hydroxyurea sensitive protein
HYS2) [Scheffersomyces stipitis CBS 6054]
Length = 487
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 219/396 (55%), Gaps = 31/396 (7%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKE-RSTTPLVKPHNFMHPDDH---LVLED 122
+L++ G+ C ++GT++ +K K +I + K PLV P +++ D++ +LED
Sbjct: 89 ILDITSGKLCWVVGTVFCDLKDKLNIFQDVEKGIDDVLPLV-PDSYVGDDENSMTTMLED 147
Query: 123 ESGRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
ESGR L E L + VTG +V + G E SAG F ++D++ +PQK L L + E K
Sbjct: 148 ESGRAILHNEEFLSKNILVTGCIVGVLGIEISAGIFEIMDIVYPEASPQKPLTLKASEGK 207
Query: 182 -YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE----- 235
V +VSGLN+ G L+ +LL ++TG LG ++ A+ + ++IAG+S++
Sbjct: 208 GKVAIVSGLNLEEGVDADLKLELLKQYVTGSLGSSEDSKTASSVCRLIIAGDSVKPIKEM 267
Query: 236 ---IPRGLLNGQNLASKDQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
R + N SK+ S+ E + + D L +I +P+ +MPG ND LPQQ
Sbjct: 268 SDRSNRDFVTTNNYGSKNISQYNPESLVKFDEFLREILVSLPVSVMPGNNDMGEICLPQQ 327
Query: 292 PLNRCLFPGSATY---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ----- 343
PL++ LF +A Y TNP+ F +R LGTSGQ + D+ KY N
Sbjct: 328 PLHKSLFHSNARYLNGEYLERLTNPYWFNFGELRVLGTSGQNVHDILKYLSKNTTAAPEL 387
Query: 344 -LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFETRLLKGSD 401
L+ ME ++W++ PTAP+TL CYPF + DPF LV+ PHVYF GNQQ++ + + +
Sbjct: 388 ILKIMESHIKWQNFIPTAPDTLYCYPFDNSDPFTLVDETPHVYFVGNQQQYASEVYTYAS 447
Query: 402 RQL-----VRLVCIPKFSETGVAVVVNLKNLECHTL 432
VRLV +P+FSETG V+++L LE +
Sbjct: 448 TTTGNSGSVRLVSVPRFSETGELVLLDLDTLETEVV 483
>gi|209876912|ref|XP_002139898.1| DNA polymerase epsilon subunit B family protein [Cryptosporidium
muris RN66]
gi|209555504|gb|EEA05549.1| DNA polymerase epsilon subunit B family protein [Cryptosporidium
muris RN66]
Length = 493
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 214/384 (55%), Gaps = 29/384 (7%)
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERST-TPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
EC+IIG +YK MKL+P++LDEY ++ T K NF D L +ED S R+ L
Sbjct: 116 ECIIIGLIYKEMKLRPTVLDEYLQDIDVETNENKITNFCSSTDKLYIEDTSSRICLSSPN 175
Query: 134 --LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK-------YVV 184
L S YV+G ++A+ G +T +G F+V D P ++P + + Y+
Sbjct: 176 NILDSSKYVSGTMIAVKGVQTDSGIFIVNDYC-LPEVPILQVPCDFPDSNPSELLPIYIG 234
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHITGHL----GDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
VSGLN+G ++PL QLL D ITG + + IA+ IV ++IAGN++ +
Sbjct: 235 FVSGLNIGDPRTDPLPLQLLRDFITGQFIKAESMDINKDIASRIVRLIIAGNTMSLLDTA 294
Query: 241 LNGQ-NLASK---DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
Q N SK D+ L I E+D L Q+A+ + +D+M GP DP S+PQ ++
Sbjct: 295 KEIQTNTGSKLVVDKDSLNYQICEVDTYLAQLASVINVDLMSGPQDPVPISMPQPQMHPS 354
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHL 356
LFP S Y+TFR TNP+ F +++VR +G SG +IDD+ YS + ++ ++ + R L
Sbjct: 355 LFPNSKDYDTFRPTTNPYSFSINDVRIIGVSGHSIDDVMAYSSYKEPIDALKYCVESRSL 414
Query: 357 APTAPNTLGCYPFTDRDPFLV----ESCPHVYFAGNQQKFET-RLLKGSDRQLVRLVCIP 411
APTAP+TL CYP D D + + PH+ FAGNQ KF++ R G + IP
Sbjct: 415 APTAPDTLPCYPLFDDDVLSLDYPDDQFPHLIFAGNQSKFQSFRFPNGP-----LCITIP 469
Query: 412 KFSETGVAVVVNLKNLECHTLSFG 435
KFSE V+V++ +L+ T++FG
Sbjct: 470 KFSEIATLVLVDINSLKTKTINFG 493
>gi|190346775|gb|EDK38941.2| hypothetical protein PGUG_03039 [Meyerozyma guilliermondii ATCC
6260]
Length = 487
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 215/394 (54%), Gaps = 30/394 (7%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDES 124
+L++E G C + GT++ M K +IL + +++ D L+LED+S
Sbjct: 86 ILDIESGEMCWVSGTIFSDMNNKQNILKDVENGVDDVLPKAKQSYVSGDVPPVLMLEDDS 145
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN---SGED 180
GR L + L + VTG VA+ G E AG F +LDV+ ++PQ LP SGE
Sbjct: 146 GRAILHNDDFLKKNLLVTGCFVAVLGIEVQAGIFEILDVVYPVISPQLPLPTKRQPSGE- 204
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-EIPR- 238
Y+ LVSGL+V + L+ +LL +I G LG+E + A+ I H+VIAG+S+ +P
Sbjct: 205 -YIALVSGLSVSDAANYDLKLELLKQYILGELGNESDTSRASTIKHLVIAGSSVASLPEK 263
Query: 239 ----GLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
+ + SK+ SR E I+ D L I + VP+ +MPG +DP LPQQPL
Sbjct: 264 TGEDDFTSASDFGSKNVSRFNAESIEMFDSFLADIVSSVPVSVMPGEDDPTEICLPQQPL 323
Query: 294 NRCLFPGSATYN---TFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----SEANDQLE 345
+R +FP + Y + TNP E++ +R LGT+G+ ++D+ KY + ++
Sbjct: 324 HRSIFPSTKRYANGPNLQYRTNPTWLEVNGIRMLGTAGENVNDICKYLPESLTTPESTID 383
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFET------RLLK 398
M ++W++ PTAP+TL CYPF D DPF L + PH+YF GNQ+KFE+ R
Sbjct: 384 IMRANIKWQNFTPTAPDTLYCYPFKDSDPFTLSDETPHLYFVGNQEKFESAEFRAQRDHN 443
Query: 399 GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
D V+LV IPKF+ TG V+V+ +L + +
Sbjct: 444 SDDEVTVQLVSIPKFATTGQVVLVDTGDLSTNVV 477
>gi|343425859|emb|CBQ69392.1| related to HYS2-DNA-directed DNA polymerase delta, 55 KD subunit
[Sporisorium reilianum SRZ2]
Length = 506
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 229/404 (56%), Gaps = 39/404 (9%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM-HPDDHLVLEDESG 125
+L++ +G C ++G +Y M LKP +L++ ++E+ P F+ + D L +ED+SG
Sbjct: 106 ILDVRQGDICYVVGNVYCAMPLKPDVLEDLTREQWLAPQPVRSKFVDYAKDELFIEDQSG 165
Query: 126 RVKLGGAEL-----LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL----- 175
RVKL G + L S +TG+V A+ G ET AG+F V+D + A L P PL
Sbjct: 166 RVKLVGDAIRGGTALRSMLITGVVAAVLGTETRAGDFDVVDAVFASLPPAPSKPLTKAEN 225
Query: 176 -------NSGEDKYVVLVSGLNVG--SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVH 226
+S +D++VVL+SGL +G S + L QLLV+++TG LG++ ++ ++ IV
Sbjct: 226 GTSAKHESSAKDQWVVLMSGLAIGGDSALESELSMQLLVEYLTGELGEDADRVSSSNIVA 285
Query: 227 VVIAGNSIEIP-------RGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPG 279
VIAGNS+ P + GQ+ + + P LD LL + + +P+ ++PG
Sbjct: 286 AVIAGNSLAPPTRNEDQDKPKRYGQDQPTYSSA----PTLALDQLLADLCSSMPVHLLPG 341
Query: 280 PNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSE 339
DPA+ ++PQQP++ L P + +++ + TNP +L LGTSGQ IDD+ KY +
Sbjct: 342 ERDPASVAVPQQPIHFALLPRAGRFDSLQRHTNPAWMQLGERTLLGTSGQNIDDIFKYVD 401
Query: 340 AND--QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLL 397
D ++E RTL W H+APTAP+TL CYPF DPF+++ P + GNQ K+ + +
Sbjct: 402 EPDDARIEMAMRTLEWGHVAPTAPDTLWCYPFKASDPFVLKHRPDILVVGNQPKYASAVY 461
Query: 398 KGSDRQL-----VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
G D++ R+V +P+F++ V+VNL +LE + T
Sbjct: 462 -GFDKEDGEGKGCRVVLVPEFAKIKQVVLVNLASLETRLVCIET 504
>gi|336473003|gb|EGO61163.1| hypothetical protein NEUTE1DRAFT_76964 [Neurospora tetrasperma FGSC
2508]
gi|350293747|gb|EGZ74832.1| hypothetical protein NEUTE2DRAFT_155420 [Neurospora tetrasperma
FGSC 2509]
Length = 525
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 257/504 (50%), Gaps = 77/504 (15%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHL 62
D EA LQR+ Y L F+++K QQY+ IYF RL +R A+ + W+ +
Sbjct: 19 DAPEA-LQRQITNYKPL-HTFKLEKTRPYQQQYADIYFLRLTKIRPAVEAAASAAWEGTV 76
Query: 63 -------PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFM-H 113
+ VL++ +G C + GT+Y M LKPSIL++ SK+R + P H + +
Sbjct: 77 LGGEKVKRVERVLDVRQGELCWVAGTVYMDMPLKPSILEDVSKDRWISAPTSVGHYYSGN 136
Query: 114 PDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL 173
+D ++LED+SGR++L G L VTG +VA+ G E + GEF V+D+L A L PQ E
Sbjct: 137 GEDSVMLEDDSGRIRLVGNALQNHFMVTGCIVAVMGTENANGEFEVIDLLFAELPPQPER 196
Query: 174 --------PLNSGED-----------------KYVVLVSGLNVGSG-TSNPLQFQLLVDH 207
+S ED K + LVSGL + TS ++ LL+++
Sbjct: 197 WSLSKGKKEADSSEDVEMMDASFSGHPRKPSSKKIALVSGLEFSNADTSYAMELNLLLEY 256
Query: 208 ITGHLGDEK-EQGIAAEIVHVVIAGNSIEIPR----------------GLLNGQNLASKD 250
+ G D ++ + I ++IAGNSI QN
Sbjct: 257 LLGEALDPSIQRDELSHITRLIIAGNSISTTAAEQAKPAAAFDTTTVTNKFQPQNKKYGY 316
Query: 251 QSRLFEPIKE--LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY---- 304
S + P+ LD L+++ +P+ ++PG DPAN S PQQP++ +FP S TY
Sbjct: 317 DSSSYNPVPSQLLDSFLSELLPTMPVTLLPGALDPANASYPQQPIHPAMFPQSRTYMPPP 376
Query: 305 ----------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFME 348
F + TNP E++ R LGT GQ +DD+ KY E+ D+L ME
Sbjct: 377 KAGAGKDRDVPGEEEPGWFDNVTNPWEGEIEGWRVLGTGGQNLDDVFKYVESEDRLGMME 436
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
RWR +APTAP+TL YPF + +PF+++ CPH++F G Q +F T+++ G D Q VRL+
Sbjct: 437 AMCRWRCVAPTAPDTLWSYPFQEDEPFVIKECPHLFFVGCQPEFGTKVIHGPDGQAVRLI 496
Query: 409 CIPKFSETGVAVVVNLKNLECHTL 432
+P FSET V+V+ + L+ +
Sbjct: 497 AVPSFSETREVVLVDTETLDVERV 520
>gi|254583408|ref|XP_002497272.1| ZYRO0F01738p [Zygosaccharomyces rouxii]
gi|238940165|emb|CAR28339.1| ZYRO0F01738p [Zygosaccharomyces rouxii]
Length = 470
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/435 (33%), Positives = 228/435 (52%), Gaps = 47/435 (10%)
Query: 35 QYSQIYFARLHLMRALLYS-LVPNW--------KPHLPICTVLELEEGRECVIIGTLYKH 85
QY +Y RL M+ + + W +P + VL+++ G+ C IG++Y
Sbjct: 46 QYYHMYEHRLRTMKNRVRKECIERWNDDFKLNGEPVVMKQKVLDIQAGQPCWAIGSIYCE 105
Query: 86 MKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIV 144
MK KP+IL+E + P L K + + D ++LEDESGRV L G + + +VTG V
Sbjct: 106 MKYKPNILEEVINDTYGAPDLTKSYTDVEGTDEVMLEDESGRVLLVGDYISKTPFVTGTV 165
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED-KYVVLVSGLNVGSGTSNPL-QFQ 202
+ + G E AG F VLD+ PQ LP + D + + L+SGLN+ S + L + Q
Sbjct: 166 IGVLGMEAEAGTFQVLDICYPTPLPQSPLPKHDKHDNRKIALISGLNLNSTSPGRLLKLQ 225
Query: 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262
LL + + G + ++ E I +VI G+S++ + K + ++EL
Sbjct: 226 LLQEFLLGRICNDDE---IINIGKLVILGDSVD--------AKVDEKGPGDMINCLEELG 274
Query: 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS-------ATYNTFRSCTNPHC 315
L+ I +P+D+MPG DP + SLPQQPL++ LF S F TNP+C
Sbjct: 275 KFLSNILQSIPIDLMPGMKDPTDKSLPQQPLHKALFRDSLRPLFEEVNKQLFNVVTNPYC 334
Query: 316 FELDNVRFLGTSGQTIDDLQKY----------------SEANDQLEFMERTLRWRHLAPT 359
F + ++ L +GQ I+D+ KY + +L+ ME T++W++LAPT
Sbjct: 335 FTFEGLKLLAIAGQNINDICKYIIPYQEDGKSEDSQLEDTVDHRLDLMECTMKWQNLAPT 394
Query: 360 APNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVA 419
AP+TL YP+ D DPFL+ PH+Y GNQ F TR L R+ ++++ +P+FS TG
Sbjct: 395 APDTLWTYPYKDDDPFLLAEWPHIYAVGNQPDFGTRELDLKGRR-IKMISVPEFSSTGKI 453
Query: 420 VVVNLKNLECHTLSF 434
V++++K LE ++
Sbjct: 454 VLLDIKTLETEIVNI 468
>gi|307189556|gb|EFN73926.1| DNA polymerase delta subunit 2 [Camponotus floridanus]
Length = 445
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 157/445 (35%), Positives = 238/445 (53%), Gaps = 17/445 (3%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHL 62
D + + RK ++ F++ ++ Y + IY ARL+ +R +++ W +
Sbjct: 3 DNDSCKYNRKVVSFKDFGR-FKLSEKKYDDNSLN-IYTARLNDLREDMIHRAKLKWTNYS 60
Query: 63 PI-CTVLELEE-GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
I + L LE+ + ++IG LYK KLKPS+L E SKE N+ +D L L
Sbjct: 61 YIEISRLALEDPEKSYILIGVLYKDQKLKPSLLRELSKELQLKVAQPSKNYASANDKLFL 120
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNS-GE 179
EDE+ R++L G + VTG+V A+ G E + G V D G P+ + S E
Sbjct: 121 EDETLRIRLVGNHVNVQEVVTGLVCAILGHEEN-GTLWVEDWCFPGYCPKPCISSGSLVE 179
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
+ ++LVSGLN+ + T + L LL + ITG G Q A I V+IAGNSI
Sbjct: 180 NAKILLVSGLNLVNNT-DQLSLDLLSEWITGMAGCINAQEEEAVIARVIIAGNSICDSAK 238
Query: 240 LLNGQNL---ASKDQSRL---FEPIKELDILLTQIAAGVPLDIMPGPNDPA-NFSLPQQP 292
+ + S DQ ++ + +LD L+ I + +MPG DPA N+S+PQQP
Sbjct: 239 IYYHKGYHETKSYDQHKIKADITAMHKLDSFLSTILHCCYVVLMPGEFDPACNYSMPQQP 298
Query: 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND--QLEFMERT 350
+ C SA + TNP ++ G+ G+ I D+ K + + LE++ERT
Sbjct: 299 FHPCTLQKSARLKSLHGATNPWIGDIGGRIVAGSCGRPIADIMKIAGLCELSSLEWLERT 358
Query: 351 LRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCI 410
L WRH APT P+TL +PF DPF+++ CP +YFAGN ++T+L+ + Q +RL+C+
Sbjct: 359 LIWRHYAPTGPDTLPIHPFFKNDPFVMKECPDIYFAGNMDVYDTKLITTDEGQTIRLICV 418
Query: 411 PKFSETGVAVVVNLKNLECHTLSFG 435
PKFSET AV+VNL++L ++SFG
Sbjct: 419 PKFSETKTAVLVNLQDLTTQSISFG 443
>gi|365984701|ref|XP_003669183.1| hypothetical protein NDAI_0C02800 [Naumovozyma dairenensis CBS 421]
gi|343767951|emb|CCD23940.1| hypothetical protein NDAI_0C02800 [Naumovozyma dairenensis CBS 421]
Length = 471
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 230/443 (51%), Gaps = 48/443 (10%)
Query: 30 TYRGQQYS----QIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELEEGREC 76
+Y+G+ Y+ IY RL + + V W + VL+++ C
Sbjct: 37 SYKGRDYNSQFYHIYKYRLDTFKERVTKECVKRWDNGFKLKGRSVIKKEKVLDIQGNEPC 96
Query: 77 VIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESGRVKLGGAELL 135
IGT+Y MK KP+IL+E + + P +VK + + D ++LEDESGRV L G +
Sbjct: 97 WCIGTIYCEMKYKPNILEEVTNDTYGAPDIVKSYTDLEGSDEIMLEDESGRVLLVGDYIR 156
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL--NSGEDKYVVLVSGLNVGS 193
+ ++TG V+ + G E AG F VLD+ PQK L L N + V LVSG+N+ S
Sbjct: 157 STPFITGTVIGILGMEADAGTFQVLDICYPAALPQKPLLLDKNRKDKGSVALVSGININS 216
Query: 194 GT-SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS 252
+ + L+ QLL +++ G L E+ ++I ++I GNS++ N +
Sbjct: 217 KSPGHALRLQLLQEYLMGRLDSNDER--VSKIGKLIICGNSVDF--------NAREETPG 266
Query: 253 RLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS-------ATYN 305
L + E L + +D+MPG DP+ +LPQQP N+ LF +
Sbjct: 267 DLANSLAEFGKFLGNSLQSISIDLMPGVKDPSARALPQQPFNKALFSEALRPYFDKVNNK 326
Query: 306 TFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY--------------SEANDQLEFMERTL 351
TNP+ F +++V L SGQ+++D+ KY + +L+ ME T+
Sbjct: 327 LLNLVTNPYQFNINDVDLLTVSGQSVNDIHKYVIPMKNNSLDETPKEDIEHRLDLMECTM 386
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIP 411
+W+++APTAP+T+ CYPF + DPF+++ PHVY NQ ++ TR L +D V+++ +P
Sbjct: 387 KWQNIAPTAPDTVWCYPFKEEDPFVLKEWPHVYIVANQPEYGTRDLTLNDGVNVKIISVP 446
Query: 412 KFSETGVAVVVNLKNLECHTLSF 434
+FS+TG ++++L NLE ++
Sbjct: 447 EFSKTGSVILLDLNNLESEVVTI 469
>gi|149238157|ref|XP_001524955.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451552|gb|EDK45808.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 479
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 36/433 (8%)
Query: 34 QQYSQIYFARL-HLMRALLYSLVPNWKPHLPIC---------TVLELEEGRECVIIGTLY 83
+QY +Y RL HL + + + W + +L+++ G+ C ++GT++
Sbjct: 44 KQYFSMYQYRLTHLKNRVTSNALKKWGDGVKTIDGQTIYKQDKILDIKSGKLCWVVGTVF 103
Query: 84 KHMKLKPSILDEYSK-ERSTTPLVKPHNFMHPDDH---LVLEDESGRVKLGGAELLP-SA 138
K K +IL++ K PLV P +++ +D ++LEDESGR L E L +
Sbjct: 104 CDAKYKLNILNDVEKGTDDVLPLV-PVSYLDENDEQPVVMLEDESGRAVLHNEEFLNRNL 162
Query: 139 YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNP 198
VTG +VA+ G E AG F ++DV APQK L K + +VSGLN+G+
Sbjct: 163 LVTGCIVAVLGIEVQAGIFEIMDVAYPECAPQKPLSPPQSRAKKIAIVSGLNIGAEGDYD 222
Query: 199 LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP----------RGLLNGQNLAS 248
L+ +LL + G G + ++ I ++IAG+SIE P R + N S
Sbjct: 223 LKIELLKQFLLGETGSSSDSEYSSNIARLIIAGDSIE-PIRDVAAEEDLRNFVTTNNYGS 281
Query: 249 KDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---ATY 304
K+ ++ E +++LD + ++ +P+ IMPG +DP+ +PQQPL+R +F S +
Sbjct: 282 KNITKYTTESLQKLDNFINEVIVNLPISIMPGDHDPSEICIPQQPLHRSIFKSSLSLVSD 341
Query: 305 NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEFMERTLRWRHLAPTAP 361
+ TNP E+D V+ LGTSGQ ++D+++Y S A D ++ M+ ++ W++ PTAP
Sbjct: 342 DRLERLTNPVWLEIDGVKILGTSGQNVNDVKRYMTRSTAQDSMKIMKSSMSWQNFVPTAP 401
Query: 362 NTLGCYPFTDRDPFL-VESCPHVYFAGNQQKFETRLLKGSDR-QLVRLVCIPKFSETGVA 419
+TL CYP+ D DPF+ ++ PHVYFAGNQ K+E + V LV IP+F TG
Sbjct: 402 DTLYCYPYDDYDPFIFTDTLPHVYFAGNQTKYEADTYTCPESGSKVSLVSIPEFKTTGEF 461
Query: 420 VVVNLKNLECHTL 432
VV +L ++ +
Sbjct: 462 VVFDLGTMQSEVV 474
>gi|146418689|ref|XP_001485310.1| hypothetical protein PGUG_03039 [Meyerozyma guilliermondii ATCC
6260]
Length = 487
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 214/394 (54%), Gaps = 30/394 (7%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDES 124
+L++E G C + GT++ M K +IL + +++ D L+LED+S
Sbjct: 86 ILDIESGEMCWVSGTIFLDMNNKQNILKDVENGVDDVLPKAKQSYVSGDVPPVLMLEDDS 145
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN---SGED 180
GR L + L + VTG VA+ G E AG F +LDV+ ++PQ LP SGE
Sbjct: 146 GRAILHNDDFLKKNLLVTGCFVAVLGIEVQAGIFEILDVVYPVISPQLPLPTKRQPSGE- 204
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-EIPR- 238
Y+ LVSGL+V + L+ +LL +I G LG+E + A I H+VIAG+S+ +P
Sbjct: 205 -YIALVSGLSVSDAANYDLKLELLKQYILGELGNESDTSRALTIKHLVIAGSSVASLPEK 263
Query: 239 ----GLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
+ + SK+ SR E I+ D L I + VP+ +MPG +DP LPQQPL
Sbjct: 264 TGEDDFTSASDFGSKNVSRFNAESIEMFDSFLADIVSSVPVSVMPGEDDPTEICLPQQPL 323
Query: 294 NRCLFPGSATYN---TFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----SEANDQLE 345
+R +FP + Y + TNP E++ +R LGT+G+ ++D+ KY + ++
Sbjct: 324 HRSIFPSTKRYANGPNLQYRTNPTWLEVNGIRMLGTAGENVNDICKYLPESLTTPESTID 383
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFET------RLLK 398
M ++W++ PTAP+TL CYPF D DPF L + PH+YF GNQ+KFE+ R
Sbjct: 384 IMRANIKWQNFTPTAPDTLYCYPFKDSDPFTLSDETPHLYFVGNQEKFESAEFRAQRDHN 443
Query: 399 GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
D V+LV IPKF+ TG V+V+ +L + +
Sbjct: 444 SDDEVTVQLVSIPKFATTGQVVLVDTGDLSTNVV 477
>gi|390594258|gb|EIN03671.1| hypothetical protein PUNSTDRAFT_139385 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 522
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 156/474 (32%), Positives = 236/474 (49%), Gaps = 76/474 (16%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-PNWK-----PHLPICTVLELEEGRECVIIGTLYKHMK 87
QY+ IYF RL ++R + W+ P L + VL++ + + C I+GT+Y M
Sbjct: 44 HQYANIYFVRLRMLRKFVEDRAQKRWEGIAGSPVL-VPRVLDVVKSQLCYIVGTVYMDMP 102
Query: 88 LKPSILDEYSKERSTTPLVKPH-NFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVA 146
LKP++L++ + S P+ P F D ++LEDESGRV+L G + + VTG+++
Sbjct: 103 LKPNVLEDIGRHHSI-PVPPPREKFYSETDCVMLEDESGRVRLVGKAVTEAGLVTGVILG 161
Query: 147 LHGKETSAGEFLVLDVLDAGLAPQKEL----------------PLNSGEDKYVVLVSGLN 190
G ET G+F V+D+ AG+APQ PL+ +D+++ LVSGL
Sbjct: 162 ALGIETPGGDFEVVDLCYAGMAPQVSSHPANDDQDDHMDVDDEPLSPDDDEHIALVSGLE 221
Query: 191 VGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP--RGLLNGQNLAS 248
VGS + + QLL++++TG E + I ++IAGNS+ G
Sbjct: 222 VGSVDAPDAEIQLLIEYLTG----EASLSSSKRISRLIIAGNSVGFAPEDGKPKDPRKPK 277
Query: 249 KDQSRLF----------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
K R + +PI L L IA+ VP+ I+PG DP+ LPQQ R +
Sbjct: 278 KKNMRKYGQPGPASFSPKPINTLAEHLLDIASAVPIHILPGEIDPSGTMLPQQKFPRAML 337
Query: 299 PGSATYNTFRSCTNPHCFELD-----------------------------NVRFLGTSGQ 329
++ +++F TNP L + L SGQ
Sbjct: 338 GPASRFSSFHPETNPTYLRLSVGSPDATASQDLPGTSKAAAARRRRLRQIDRTLLVHSGQ 397
Query: 330 TIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG 387
+DD+ KY + +L ERTLRWRH+APTAP+TL C+P+ DPF++ P VY G
Sbjct: 398 PLDDMFKYLPTPPFSRLAVAERTLRWRHMAPTAPDTLWCHPYFSADPFVIAQTPDVYVIG 457
Query: 388 NQQKFETRLLK----GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
NQ +F T+++ G VR+V +P+FSETG+ V+VNL+ L T+ F +
Sbjct: 458 NQPEFRTKVVADEGPGKSGARVRIVLVPRFSETGLLVLVNLRTLGVSTVRFDVE 511
>gi|242209589|ref|XP_002470641.1| predicted protein [Postia placenta Mad-698-R]
gi|220730320|gb|EED84179.1| predicted protein [Postia placenta Mad-698-R]
Length = 523
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/484 (30%), Positives = 231/484 (47%), Gaps = 90/484 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSI 92
QYS IY+ RL ++R + + W G+ +IGT+Y M +KP++
Sbjct: 42 HQYSSIYYVRLQVLRKYVMARARRRWHD----------VAGQLSYVIGTVYMDMPMKPNV 91
Query: 93 LDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKET 152
L++ +++ S + DD +LEDES R+ L G + + VTG+V+ + G ET
Sbjct: 92 LEDLARDHSLPAPAPRMTYCSQDDQPMLEDESCRIALVGERIRSARLVTGVVLGILGIET 151
Query: 153 SAGEFLVLDVLDAGLAPQKELPLNSGE--------------------------DKYVVLV 186
S GEF V+D+ AG+APQ LN GE D++V ++
Sbjct: 152 SGGEFEVVDICTAGMAPQPYSDLNWGESSAGSSQEGKAEKMDVDETPVPGQEQDEWVAIL 211
Query: 187 SGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE--------IPR 238
SGL +GS + Q Q+L +++TG G +Q AA I +++AGNS+ +P
Sbjct: 212 SGLEIGSTSPADAQIQMLAEYLTGEAGGLDDQASAARISRLIVAGNSLAHILNADGTVPE 271
Query: 239 GLLNGQNLASKDQSRLFE--PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
+ + S F P + L +T IA +P+ ++PG +DPA LPQQP R
Sbjct: 272 EKMERKGRRYGQDSANFSPHPTQTLAAHITDIARTMPIHVLPGASDPAGTLLPQQPFPRA 331
Query: 297 LFPGSATYNTFRSCTNPHCFEL----------DNVR-----------------------F 323
+F +A + +F TNP + D + F
Sbjct: 332 MFGSAAAFASFTCETNPTYLRVGPSPNTEGTPDGEKGKQKASASASKSAQAVSATPFRTF 391
Query: 324 LGTSGQTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCP 381
L +SGQ +DD+ KY S + +L E +LRWRH+APTAP+TL C+P+ DPF++ P
Sbjct: 392 LVSSGQPVDDMLKYLPSPLSTRLSIAEASLRWRHIAPTAPDTLWCHPYFGSDPFVISETP 451
Query: 382 HVYFAGNQQKFETRLLKGSDR--------QLVRLVCIPKFSETGVAVVVNLKNLECHTLS 433
VY G Q +F TR+ + + + R+V +P F ETG V++N++ L T+
Sbjct: 452 DVYIVGCQPRFGTRVGEEGEEDMEGEGGVKRCRVVLVPGFRETGTLVLLNMRTLAVKTVQ 511
Query: 434 FGTQ 437
F +
Sbjct: 512 FAIE 515
>gi|260948094|ref|XP_002618344.1| hypothetical protein CLUG_01803 [Clavispora lusitaniae ATCC 42720]
gi|238848216|gb|EEQ37680.1| hypothetical protein CLUG_01803 [Clavispora lusitaniae ATCC 42720]
Length = 540
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 211/381 (55%), Gaps = 16/381 (4%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHL-VLEDESG 125
+L++ G C + GT++ + K +IL++ K P ++ PDD L +LED+SG
Sbjct: 161 ILDIASGELCWVSGTVFADSRKKLNILNDVEKGIDDVMPASPPTYVDPDDGLLMLEDDSG 220
Query: 126 RVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVV 184
R L ELL S VTG VA+ G E AG F ++++ APQ+ L E +Y+
Sbjct: 221 RAVLHNDELLQNSGLVTGCFVAVLGIEIQAGIFEAMEIICPTPAPQRPLGELKPEKRYLA 280
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ 244
+VSG+ + L LL + G LG + A +I ++IAG+S+ + +++
Sbjct: 281 IVSGIMFSD--AGDLSTVLLQQWLCGELGGATDAEAARQISRLIIAGDSVSESKPVVSDT 338
Query: 245 NLASKDQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+ SK+ SR + L QIA +P+ IMPG +DPA LPQQP++R L S
Sbjct: 339 SFGSKNTSRFSGSAVSHFSTWLAQIATSLPVTIMPGQSDPAETCLPQQPIHRALLGASGR 398
Query: 304 YNT-----FRSCTNPHCFELDN-VRFLGTSGQTIDDLQKYSEAN---DQ-LEFMERTLRW 353
++ + TNP ELD R LGT+GQ I D+ KYS DQ L MERTLRW
Sbjct: 399 FSGGPESLVHAATNPAWIELDTGARVLGTAGQNISDILKYSPGTPSLDQILTVMERTLRW 458
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKF 413
+H+APTAP+TL CYP+ + DPF ++ PHVYFAGNQ + R + S + V+++ +P+F
Sbjct: 459 QHIAPTAPDTLFCYPYEECDPFALDETPHVYFAGNQMEAGWRDVDVSGNK-VKVISVPRF 517
Query: 414 SETGVAVVVNLKNLECHTLSF 434
E+ V+V++ LE ++F
Sbjct: 518 CESKQIVLVDVATLEAKIVNF 538
>gi|221055653|ref|XP_002258965.1| DNA polymerase delta small subunit [Plasmodium knowlesi strain H]
gi|193809035|emb|CAQ39738.1| DNA polymerase delta small subunit, putative [Plasmodium knowlesi
strain H]
Length = 477
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 153/475 (32%), Positives = 239/475 (50%), Gaps = 70/475 (14%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV------PNWKP 60
+ +++++ Y + F I K TY QQY +IY AR M+ LL V W
Sbjct: 22 QKKIKKEHYNYENHSKGFVISKATYT-QQYCEIYSARTKAMKGLLVKTVERLAQGSGWAS 80
Query: 61 HLPICTV-------------------------------------LELEEGRECVIIGTLY 83
H V E++ C IGTL+
Sbjct: 81 HQIKSQVNGKVEVELDSKVKREGGEIVKGFAGGGGKEYSLLHYLKEIKANENCYCIGTLF 140
Query: 84 KHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143
K M+L+PSIL+EY E + T + N+ H +D L LEDE+ R+KL G + YVTG+
Sbjct: 141 KKMELRPSILNEYISEINETEDIVV-NYSHDEDVLFLEDETARLKLEG-NINSDHYVTGL 198
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
V + G S G L +D L P+ E+P S +DKY++ VSG+++ N
Sbjct: 199 TVIIKGSGMSNGS-LYVDELIYAYVPKLEVPRCISDDDKYIMFVSGVHISERNGNVNNTS 257
Query: 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262
LL D I G GD + ++ +++ VV+ GN + +N+ S ++ +K D
Sbjct: 258 LLKDFILGLYGD---KDLSEKLIRVVMVGNCL---------RNVGSDEKD-----MKTFD 300
Query: 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVR 322
+ L + GV +D+MPG NDP + LPQQP F S Y++F+ TNP+ F +DNV
Sbjct: 301 MFLASLCPGVFVDLMPGENDPTDAILPQQPFPNLFFKTSRNYSSFQCVTNPYLFSIDNVN 360
Query: 323 FLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV---ES 379
SG+ ++++ YS+ N L+ + + R L+PT P+TLGCYPF D+DPF + +
Sbjct: 361 VCCMSGEPVNNIVSYSK-NSPLDALRMIAKSRILSPTCPDTLGCYPFVDQDPFCLQDDDK 419
Query: 380 CPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
PH++ GN + E + + +++L LVC+P F T A++VN++N++ TL+F
Sbjct: 420 YPHIFVNGNCTELEVQYMH-EEKKLPLLVCLPSFDVTPKALLVNIRNMQHVTLTF 473
>gi|294659973|ref|XP_462427.2| DEHA2G20350p [Debaryomyces hansenii CBS767]
gi|199434373|emb|CAG90937.2| DEHA2G20350p [Debaryomyces hansenii CBS767]
Length = 487
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 214/398 (53%), Gaps = 29/398 (7%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLED 122
+L++ G+ C + GT++ MK K +IL + P + + ++LED
Sbjct: 89 ILDISSGQLCWVSGTIFSDMKNKLNILQDVENGVDDVLPKVPETYTLSEVKEMPVVMLED 148
Query: 123 ESGRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
ESGR L + L + VTG +VA+ G E AG F ++DV+ ++PQK L E+
Sbjct: 149 ESGRAILNNDDFLKKNILVTGCIVAILGIEIQAGIFEIMDVVYPSVSPQKPLVAPKKENS 208
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE-----I 236
+ VSGL + ++ ++ +LL ++TG LG + A+ I +VIAG+SI +
Sbjct: 209 KIAFVSGLKLCDEANHDIKIELLKQYLTGELGCNTDTQAASYISRLVIAGDSIAPIEETV 268
Query: 237 PRGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
N SK+ S+ + +K LD +T + VP+ IMPG NDPA LPQQPL++
Sbjct: 269 DDDFFTTNNYGSKNISKFNTDSLKSLDKFITDLLPSVPISIMPGNNDPAEICLPQQPLHK 328
Query: 296 CLFPGSATY---NTFRSCTNPHCFEL--DNVRFLGTSGQTIDDLQKYSEAND------QL 344
+F + Y +T ++ TNP E+ +R LGTSGQ I D+ KY A L
Sbjct: 329 SIFSSNKRYVGGSTLQTLTNPTWMEVQESGLRLLGTSGQNISDILKYLTAETLTDPQVVL 388
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFETR---LLKGS 400
ME ++W+++ PTAP+TL CYPF + DPF L + PHVYF GNQ+ + T+ L K
Sbjct: 389 TIMESNIKWQNIIPTAPDTLYCYPFDNADPFTLADETPHVYFVGNQKSYHTKTINLQKDH 448
Query: 401 DRQ---LVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
D + L+ IP FS+TG V+++L LEC +SF
Sbjct: 449 DNHETAQITLISIPDFSQTGQIVLLDLTTLECELVSFN 486
>gi|363752703|ref|XP_003646568.1| hypothetical protein Ecym_4733 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890203|gb|AET39751.1| hypothetical protein Ecym_4733 [Eremothecium cymbalariae
DBVPG#7215]
Length = 462
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 214/388 (55%), Gaps = 36/388 (9%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKER-STTPLVKPHNFMHPDDHLVLEDESG 125
VL+++ +GT+Y MK KP+IL+E + T +VK + + D ++LEDESG
Sbjct: 86 VLDIQATEPSWCVGTIYCEMKYKPNILEEVINDTYGVTGVVKSYTDIQGSDEVMLEDESG 145
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVL 185
R+ L G + + +VTGIVV + G E AG F VLD+ PQ PL++ K V
Sbjct: 146 RILLIGDLIKNTIFVTGIVVGVLGMEAEAGTFQVLDICYPKSIPQA--PLSNVNGKKVAF 203
Query: 186 VSGLNVGSGTSN-PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ 244
+SGLN+ L+ ++L D ++G +G + A++ +++ GNS+
Sbjct: 204 ISGLNMTPHDPKLSLRIKVLQDMLSGDIGHFDKM---ADVARLILCGNSL--------SY 252
Query: 245 NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF-PGSAT 303
N+ KD L + E L + +P+ ++PG +DP SLPQQPLN+ LF P
Sbjct: 253 NIDHKD---LLGALDEFGGFLVNVLKSLPITMLPGASDPTEISLPQQPLNKALFKPSLKP 309
Query: 304 Y------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-------SEANDQLE----F 346
Y + F TNP+ F+++ + L TSGQ IDD+ KY S+ ND +E
Sbjct: 310 YFAEINDDLFEPVTNPYWFDIEGTQILATSGQNIDDICKYIIPYYEGSDKNDAIEHRLNL 369
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVR 406
ME TL+W+++APTAP+TL +PF DRDPF+++ PHVY GNQ +F R + + V
Sbjct: 370 MEATLKWQNIAPTAPDTLWSFPFKDRDPFILKEWPHVYIVGNQPEFGHRKVTLENSITVH 429
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSF 434
++ +P FSETG +V++L LE T++
Sbjct: 430 IISLPAFSETGQFLVLDLGTLESETITI 457
>gi|302310769|ref|XP_455752.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|199425089|emb|CAG98460.2| KLLA0F14949p [Kluyveromyces lactis]
Length = 462
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/432 (33%), Positives = 233/432 (53%), Gaps = 49/432 (11%)
Query: 35 QYSQIYFARLHLMRALLYSLVPN-WKPHLPI--------CTVLELEEGRECVIIGTLYKH 85
Q+ ++Y RL+++R + S + W + VL+++ G C IGT+Y
Sbjct: 46 QFYKMYQYRLNVLRNRVESCCQSKWNSEFRLQGRKVVKKSKVLDIQAGEPCWCIGTVYCE 105
Query: 86 MKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIV 144
M+ KP+IL E + P L+K + D ++L+DESGRV L G + + +V+G V
Sbjct: 106 MQYKPNILQEIVDDTYGAPDLIKSYTDPEGTDEIMLDDESGRVILVGELVRKTPFVSGTV 165
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSN-PLQFQL 203
V + G E AG F VLD+ PQK LP G K + L+SG+N + L+ QL
Sbjct: 166 VGILGMEADAGTFQVLDICYPQALPQKSLPPLPG--KKIALISGINATPRSPILSLRMQL 223
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
L D +TG L G+ E+ +I GNS+ +++ L ++E
Sbjct: 224 LQDALTGELS--TNSGLN-EVSRCIILGNSLN-----------PGENRQDLPGSLREFTP 269
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT-------YNTFRSCTNPHCF 316
L+ I +P+D++PG NDP++ SLPQQPL++ LF + + + F S +NP+ F
Sbjct: 270 FLSNILKSLPVDLLPGENDPSDRSLPQQPLHKALFDDALSPYFDLENADIFHSVSNPYWF 329
Query: 317 ELDNVRFLGTSGQTIDDLQKY-------------SEANDQLEFMERTLRWRHLAPTAPNT 363
+++ ++ L TSGQ I+D+ KY + +L+ E TL+W+++APTAP+T
Sbjct: 330 DIEGLQLLATSGQQINDITKYVIPFYEETKSLKGDTIDHRLDLAEATLKWQNIAPTAPDT 389
Query: 364 LGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
L CYP++D DPF+++ PHVY GNQ +F R + V +V +P+FS TG +V++
Sbjct: 390 LWCYPYSDNDPFILKEWPHVYIIGNQPEFGYRKTQLEGAVEVLIVSVPEFSTTGQYLVLD 449
Query: 424 LKNL--ECHTLS 433
L +L E HT++
Sbjct: 450 LDSLVPEVHTIA 461
>gi|449547653|gb|EMD38621.1| hypothetical protein CERSUDRAFT_123186 [Ceriporiopsis subvermispora
B]
Length = 527
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 235/479 (49%), Gaps = 79/479 (16%)
Query: 34 QQYSQIYFARLHLMRALL-------YSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHM 86
QYS IYF RL L+++ + + + ++P VL++ +G+ C IIGT+Y M
Sbjct: 44 HQYSNIYFVRLRLLQSYVEEQARRRWGSIAGNPTYVP--RVLDVNKGQLCFIIGTVYMDM 101
Query: 87 KLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVA 146
LKP++L++ ++ S + +D ++LEDESGR+ L G + + VTG+V+
Sbjct: 102 PLKPNVLEDLGRDHSLPAPAPRAKYNSEEDKVMLEDESGRLCLVGNRVRDTPLVTGVVLG 161
Query: 147 LHGKETSAGEFLVLDVLDAGLAPQKELPL--------------NSGEDKYVVLVSGLNVG 192
G ET+ G+F V+D+ AG+APQ L D++V +VSGL VG
Sbjct: 162 ALGMETAGGDFEVVDLCFAGIAPQPSSGLPQRDTDAEHMDVDDQESSDEWVAIVSGLEVG 221
Query: 193 SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-----------EIPRGLL 241
+ + Q ++LV+++TG G ++Q ++ I ++IAGNS+ E P
Sbjct: 222 ATSPADAQMEMLVEYLTGEAGGVQDQTESSRISRLIIAGNSLAASVSQNSTAPEEPE--R 279
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ + + S P L L IA +P+ ++PG +DP+ LPQQ + R +F +
Sbjct: 280 KSKRYGNDNASFSSHPTHNLSAHLVDIAHSMPIHLLPGASDPSGTILPQQSVPRAMFGRA 339
Query: 302 ATYNTFRSCTNPHCFELDN---------------------------------VRFLGTSG 328
AT+++F TNP + L SG
Sbjct: 340 ATFSSFSCETNPAYIRIGTGPATAPAAAPAVAPSKGKQAAASTSASTSDAPARTLLVHSG 399
Query: 329 QTIDDLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
Q +DDL KY + +L RTL WRH+APTAP+TL C+P+ DPF++ P +Y
Sbjct: 400 QPLDDLFKYVPTPPVTRLALAARTLHWRHVAPTAPDTLWCHPYFTADPFVITQTPDIYVI 459
Query: 387 GNQQKFETRLLKGSD--------RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
GNQ +F T+L+K + R+V +P F E+G V+VNL+ L T+ F +
Sbjct: 460 GNQPEFATQLVKEEHAGEGAEEREKRCRVVLVPGFRESGTLVLVNLRTLAVKTVRFAVE 518
>gi|116198135|ref|XP_001224879.1| hypothetical protein CHGG_07223 [Chaetomium globosum CBS 148.51]
gi|88178502|gb|EAQ85970.1| hypothetical protein CHGG_07223 [Chaetomium globosum CBS 148.51]
Length = 497
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 160/475 (33%), Positives = 250/475 (52%), Gaps = 53/475 (11%)
Query: 8 ARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHL---- 62
A L+R ++ Y L F + + QQ++ IYF RL +R + + W+ +
Sbjct: 22 ASLERPESNYKSLGN-FSLPNDRQYKQQFADIYFLRLTKIRPAVEEVATAAWQDTVLGGE 80
Query: 63 ---PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPD-DH 117
+ VL++ +G+ C +IGT+Y M LKPS+L++ SK+R + P + H + +
Sbjct: 81 TATKVDRVLDVRQGQLCWVIGTVYMEMPLKPSVLEDVSKDRWISAPTMADHYYDGAGAES 140
Query: 118 LVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK------ 171
++LED+SGRV L G+ L VTG ++A+ G E S G+F V+D+ A L Q
Sbjct: 141 IMLEDDSGRVPLVGSVLKDYFLVTGCIIAVMGTENSDGQFEVIDLKFADLPSQPGRWSLS 200
Query: 172 ---ELPLNSGED------------KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDE 215
+ P ED K + +VSGL G+ TS ++ LL++ + G D
Sbjct: 201 KGPKKPKVKDEDVEMADSSRPQPPKKIAIVSGLEFSGTDTSYAMELNLLLEFLLGEALDP 260
Query: 216 KEQGIAAEIVHVVIAGNSIEIP--------RGLLNGQNLASKDQSRLFEPIKELDILLTQ 267
Q ++I ++IAGNSI P + +L S + L P + LD L+
Sbjct: 261 AAQVELSQISRLIIAGNSIAKPSEHDPATDKRVLKKYGYDSSSYNPL--PSQLLDTFLSS 318
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT----------FRSCTNPHCFE 317
+ +P+ ++PG DPAN S PQQP++ +FP + TY F TNP E
Sbjct: 319 LLPTLPITLLPGAQDPANVSYPQQPIHPAMFPNARTYTAAPGASEQPGWFDPVTNPWEGE 378
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
++ R LGT GQ +DD+ KY ++ D+L ME RWR APTAP+TL YPF D +PF++
Sbjct: 379 VEGWRVLGTGGQNLDDICKYVDSEDRLGMMEAMCRWRCSAPTAPDTLWSYPFQDDEPFVM 438
Query: 378 ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
+ CPH+YF G Q +F T++++ Q+VRLV IP F+ T V+++ + L+ +
Sbjct: 439 KDCPHLYFVGCQPEFGTKIIESPQGQMVRLVLIPSFAATKEIVLIDTETLDVSKV 493
>gi|320583347|gb|EFW97562.1| DNA polymerase III (delta) subunit [Ogataea parapolymorpha DL-1]
Length = 488
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 233/461 (50%), Gaps = 62/461 (13%)
Query: 33 GQQYSQIYFARLHLMRA-LLYSLVPNWKPH-------LPICTVLELEEGRECVIIGTLYK 84
Q+++IY R+ +++ L WK + + +L+++ C IGT++
Sbjct: 33 ANQFNKIYSQRVKKLKSRCLKRANAKWKQETINNTNVVYVNKILDVKNMTPCYTIGTVFM 92
Query: 85 HMKLKPSILDEYSK------------ERSTTPLVKPHNFMHP-DDHLVLEDESGRVKLGG 131
MK KP+IL+E S E S ++ + P +D ++LEDESGR+ L G
Sbjct: 93 DMKYKPNILEEVSNNVYGANDVQESAELSKLDQLRATAYSDPQNDQVMLEDESGRMILDG 152
Query: 132 AELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNV 191
L VTG VV + G E AG F V+DV+ PQ P+ + +K V+L+SGL++
Sbjct: 153 EILDKILLVTGAVVGVLGMEVEAGIFTVVDVVYPEPGPQVPRPMRAAGNK-VLLLSGLHI 211
Query: 192 GSGTS-NPLQFQLLVDHITGHLGDEKEQ-GIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
+ +S PL+ +L +++ G L E I VV+AGNSI Q + K
Sbjct: 212 NNQSSLGPLE--VLKEYLMGELDSSPETVEFLRSITQVVVAGNSIRCVESA--DQVVLEK 267
Query: 250 DQSRLF-------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSA 302
D+ R + IK+LD + ++ VP+ IMPG +DP SLP+QPL+ F +
Sbjct: 268 DKYRELNKSNYDADAIKQLDAYICELLNSVPVTIMPGDSDPCEVSLPKQPLHPSFFAKAG 327
Query: 303 TYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ------------------- 343
+Y F TNP E+D VR LGTSG+ I+D+ KY N Q
Sbjct: 328 SYANFVRSTNPVWLEIDGVRLLGTSGENINDMFKYFIPNIQVDLNGEGSGMDSPVRNEIV 387
Query: 344 ----LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK- 398
L+ +E T+ W+++ PTAP+TL CYP+ DPF ++ PHVYF GNQ KFET +
Sbjct: 388 NESRLKLLEATMHWQNVVPTAPDTLTCYPYDVDDPFTLDETPHVYFVGNQPKFETAEMTL 447
Query: 399 --GSDRQL-VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
D + VR+V +P F ETG V++L +L+C +
Sbjct: 448 HCARDAPIHVRIVAVPDFCETGQMAVLDLDSLQCEAIKIAV 488
>gi|380483266|emb|CCF40727.1| DNA polymerase alpha/epsilon subunit B [Colletotrichum
higginsianum]
Length = 504
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 242/473 (51%), Gaps = 52/473 (10%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHL------ 62
L R + Y L+ F + KE QQY+ IYF RL +R A+ + W +
Sbjct: 24 LSRDPSRYKPLNS-FALPKERSYQQQYADIYFLRLTSIRPAVDAAAAEAWDGTIIGGEEA 82
Query: 63 -PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPDDH--L 118
+ VL++ +G C + GT+Y M LKP+IL++ SK+R + P+ + + DD +
Sbjct: 83 KHVNRVLDVRQGELCWVTGTVYIDMALKPNILEDVSKDRWISAPISTDRYYSNEDDKDMI 142
Query: 119 VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE---LPL 175
+LED+SGR++L G L VTG ++ + G E + GE V+DV LAPQ L
Sbjct: 143 MLEDDSGRIRLVGDVLKSIHLVTGTIIGVLGSENANGELEVIDVKFPDLAPQPSRWTLTD 202
Query: 176 NSGED--------------KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIA 221
+ ED + +VSGL+ G ++ +L + +
Sbjct: 203 SPSEDHNMSGTSTPSQRPSSKIAIVSGLSFSGGDAS-YALELTLLLEFLLGEALTPATQS 261
Query: 222 AEIVHV---VIAGNSIEIPRGLLNGQNLASKDQSR--------LFEPI--KELDILLTQI 268
+E+ HV +IAGNSI+ N ASK + + P+ + LD L +
Sbjct: 262 SELAHVSRLIIAGNSIDSSTPTPTTTNPASKTSTNKKYGYDASAYNPLPSQLLDDFLADL 321
Query: 269 AAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY---------NTFRSCTNPHCFELD 319
+P+ ++PG DPAN S PQQP++ +FP S Y + TNP E+D
Sbjct: 322 LPSIPVTLIPGAEDPANASYPQQPIHPAMFPRSRPYCAAPGAKETGWLDTTTNPWEAEVD 381
Query: 320 NVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES 379
R LGT GQ +DD+ KY +++D+L ME RWR APTAP+TL YPF D DPF+++
Sbjct: 382 GWRVLGTGGQNVDDVFKYVDSDDRLGMMEAMCRWRCSAPTAPDTLWAYPFQDDDPFVMKE 441
Query: 380 CPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
PH+YF G Q +F T++++G + Q VRL+ +P F+E+ V+V+ + LE +
Sbjct: 442 APHLYFVGCQPEFSTKVIQGDNGQQVRLITVPSFAESKELVLVDTETLEVSKV 494
>gi|451998402|gb|EMD90866.1| hypothetical protein COCHEDRAFT_1194606 [Cochliobolus
heterostrophus C5]
Length = 519
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/446 (32%), Positives = 234/446 (52%), Gaps = 48/446 (10%)
Query: 29 ETYRGQQYSQIYFARL-HLMRALLYSLVPNW-------KPHLPICTVLELEEGRECVIIG 80
+ + QQ++ +YF RL L + + W + + VL++ +G C ++G
Sbjct: 41 DRHYSQQFADMYFLRLMQLKKTVKERAEEAWHNFELGGQKASFVDRVLDVRQGELCWVVG 100
Query: 81 TLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAELLPSA 138
T+Y M KP++LD+ K+ + ++ P D ++LEDESGR+++ G E L
Sbjct: 101 TVYMEMAQKPNVLDDIGKDHWIADPPQRDTYISPSGGDEMMLEDESGRLRVTG-EPLHGH 159
Query: 139 YVTGIVVALHGKETSAGEFLVLDVL--------------DAGLAPQKE-LPLNSGEDKYV 183
+VTG ++A G E + G F V+ D L+ +K+ +P K +
Sbjct: 160 FVTGCILAALGTEEADGTFKVIATQCADLPRQPPRWERDDIALSKEKQSIPKREPAGK-L 218
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG 243
+VSGL + + + LLV+++TG + D Q ++I ++IAG S+ +L
Sbjct: 219 AIVSGLELTGADDDEVALDLLVEYLTGEMADPSTQEDVSKITRLMIAGGSLARGSPILTR 278
Query: 244 QNLASKDQ----------SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
++ A+K S P + LD L +I +P+ ++PG +DPAN +LPQQPL
Sbjct: 279 EDFAAKKSAARHYGYDASSYNAAPTERLDEFLCEILPTLPITMLPGASDPANVALPQQPL 338
Query: 294 NRCLFPGSATY-----------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND 342
+ LFP + Y N F + TNP ++D R L T GQT+ DL KY E
Sbjct: 339 HPALFPNTRLYAEPPIASNETLNGFDAVTNPWTGDIDGYRVLSTGGQTVKDLLKYFEHVK 398
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR 402
++ ME LRWR +APTAP+TL CYPF D DP ++ CPH+Y AG Q+KF+ +++K
Sbjct: 399 SVDAMEMMLRWRCVAPTAPDTLWCYPFQDHDPLMLTECPHMYIAGCQKKFDKKIIKDPAG 458
Query: 403 QLVRLVCIPKFSETGVAVVVNLKNLE 428
Q V +V +PKF TG V+V++++ +
Sbjct: 459 QKVLIVSVPKFRTTGKIVLVDMESWD 484
>gi|302501704|ref|XP_003012844.1| hypothetical protein ARB_01095 [Arthroderma benhamiae CBS 112371]
gi|291176404|gb|EFE32204.1| hypothetical protein ARB_01095 [Arthroderma benhamiae CBS 112371]
Length = 574
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 154/510 (30%), Positives = 241/510 (47%), Gaps = 107/510 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-PNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQYS IYF RL ++ + + W+ + + VL++ +G+ I+GT+Y
Sbjct: 48 QQYSDIYFLRLTRLKPAVAEVAKAAWEGYNIAGEYARRVDRVLDVRQGKLSWIVGTVYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ LKPSI+D+ SKE T V + P+ ++EDESGR+ L G+ L + VT
Sbjct: 108 LPLKPSIMDDISKENWTAAPVPQKTYNDPNSKKPTQTMVEDESGRLVLTGSLLQSTFLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQ-------KELPLNSG---------------- 178
G+VVA+ G E + G+F V+D+ + PQ +E + G
Sbjct: 168 GVVVAVLGTENADGQFEVVDIKVPDIPPQPARWEREQEPTTDVGVPAKRKHSDLEAGGSG 227
Query: 179 --EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG-----DEKEQGIAAEIVHVVIAG 231
+ K + VSGL + + + + LL D++ G+ G D+ ++I ++IAG
Sbjct: 228 SGKSKKIAFVSGLGITGTSGDTVALSLLADYLLGYTGTIPSTDDYTATNPSQISRLIIAG 287
Query: 232 NSIEIP-RGLLNGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPN 281
NS+ +N K Q + + PI D L+ I +P+ +MPG
Sbjct: 288 NSLGAKVASTVNDAANPEKRQPKKYGYDASAYNASPITLFDSFLSDILPSIPVTLMPGET 347
Query: 282 DPANFSLPQQPLNRCLFPGSATY---------------NTFRSCTNPHCFELDNVRFLGT 326
DPANFSLPQQ ++ + P S Y + TNP +++ RF GT
Sbjct: 348 DPANFSLPQQEIHTAMLPRSKIYCPPIAPKRQALPSEPGWLDNVTNPWEGDIEGWRFWGT 407
Query: 327 SGQTIDDLQKYSEA-------------NDQLEFMERTLRWRHLAPTAPNTL--------- 364
SGQ +DD+ +Y +L+ ME L+WR PTAP+T+
Sbjct: 408 SGQNVDDVLRYVNLEELEDDEVEDIENGARLKLMEHLLKWRCGVPTAPDTICKSPSHNAH 467
Query: 365 -----------GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL-------VR 406
GCYP+ D+DPF+++SCPHV+F GNQ +F++ + +G D VR
Sbjct: 468 HAAGSLLTVDPGCYPYQDKDPFVIQSCPHVFFTGNQPRFQSTIFEGGDWGTDEDSITKVR 527
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
L+ +PKF ETG V+++ + L + FGT
Sbjct: 528 LIALPKFHETGEIVLLDTETLAVEVVKFGT 557
>gi|255711228|ref|XP_002551897.1| KLTH0B02464p [Lachancea thermotolerans]
gi|238933275|emb|CAR21459.1| KLTH0B02464p [Lachancea thermotolerans CBS 6340]
Length = 486
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/426 (35%), Positives = 220/426 (51%), Gaps = 46/426 (10%)
Query: 34 QQYSQIYFARLHLMRA-LLYSLVPNWKPHLPICTV--------LELEEGRECVIIGTLYK 84
+QY +Y RL ++R + + W H + L+++ C +GT+Y
Sbjct: 68 EQYYSMYQYRLKVLRERVTKNCEVKWDSHFKLKNRKVVKKNKVLDIQANEPCWCVGTIYC 127
Query: 85 HMKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143
MK KP+IL+E + P LVK + D ++LEDESGRV L G V+G
Sbjct: 128 EMKYKPNILEEVVNDVYGAPDLVKGYLDEDGTDEVMLEDESGRVLLVGELAKTKPLVSGT 187
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
VV + G E AG F VLD+ PQ ELP S K V LVSGLN + SNP
Sbjct: 188 VVGILGMEADAGTFQVLDICFPSALPQTELPAGSQPGK-VALVSGLN--ANPSNPRLSLK 244
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
L GD AEI ++I GNSI N DQ L + E
Sbjct: 245 LQLLQQYLTGDVMSPESVAEIGRLIICGNSI----------NPVDPDQ--LTGCLTEAGT 292
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF-PGSATY------NTFRSCTNPHCF 316
+P+D+MPGP D ++ SLPQQPL++ LF P + + F TNP F
Sbjct: 293 FFGNTLQSMPIDLMPGPRDLSDQSLPQQPLHKALFGPMISPFFEESNKELFCPTTNPAWF 352
Query: 317 ELDNVRFLGTSGQTIDDLQKY------------SEAN--DQLEFMERTLRWRHLAPTAPN 362
+L+ V+ LGTSGQ IDD+ KY +EAN +++ +E LRW+++APTAP+
Sbjct: 353 QLNGVQLLGTSGQNIDDMCKYVLPFEPDSQENLAEANIATRMDIIEGCLRWQNIAPTAPD 412
Query: 363 TLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
TL CYP+ D DPF+++ PHV+F GNQ +F ++ ++ V+ + +P+FS+TG V++
Sbjct: 413 TLWCYPYKDEDPFVLKKWPHVFFVGNQPQFASKDVQLEGGVKVKAIAVPEFSKTGQVVIL 472
Query: 423 NLKNLE 428
+L+ L+
Sbjct: 473 DLETLD 478
>gi|19115318|ref|NP_594406.1| DNA polymerase delta small subunit Cdc1 [Schizosaccharomyces pombe
972h-]
gi|13431469|sp|P87324.1|DPOD2_SCHPO RecName: Full=DNA polymerase subunit delta-2
gi|2052244|emb|CAA73148.1| Cdc1 protein [Schizosaccharomyces pombe]
gi|2052246|emb|CAA73149.1| Cdc1 protein [Schizosaccharomyces pombe]
gi|2388945|emb|CAB11679.1| DNA polymerase delta small subunit Cdc1 [Schizosaccharomyces pombe]
Length = 462
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 223/436 (51%), Gaps = 29/436 (6%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPICTVLELEEGRECVIIGTL 82
+ ++TY QQY+ IYFARL +R + + W + VL+++ +C ++ T
Sbjct: 18 LSLSQQTY-SQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSDEDCWVVATA 76
Query: 83 YKHMKLKPSILDEYSKERST------TPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLP 136
Y LKP+++++ ++ + +P V P + D LED+ GR+ G+ L
Sbjct: 77 YMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYD 136
Query: 137 SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK----YVVLVSGLNVG 192
+ VTG+V+A+ G E G F+V+DV G+ +P+ + E + Y+ VSGL +
Sbjct: 137 AGVVTGVVLAVLGHEDEQGRFVVVDVCFPGIF-SHSIPMTTDESQAQPEYIAAVSGLGLS 195
Query: 193 SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLAS 248
+ +Q LVD + G L + I ++I GN SIEI +
Sbjct: 196 NDGIEGIQVHQLVDFLRGTLPHVSSFS-PSSIKRLIILGNCLAPSIEIADSASASVPIGK 254
Query: 249 KDQSRLF--------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
K R P +LD L Q+ + + + +MPGP D ++ LPQQPL+ L
Sbjct: 255 KKVKRYGYDTSAYNPNPTFQLDNFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHPALLTK 314
Query: 301 SATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAP 358
S + ++ ++ TNP L N L TSGQ I+DL+KY L+ ME TL W H+ P
Sbjct: 315 SKVWLGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHITP 374
Query: 359 TAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGV 418
T+P+TL CYPFTD+D F++E P +Y GNQ KF + + + ++LV +P+F +TGV
Sbjct: 375 TSPDTLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGCKTVINEGNR-IQLVSVPEFRKTGV 433
Query: 419 AVVVNLKNLECHTLSF 434
V++N+ L + F
Sbjct: 434 LVLINMHTLNVEIIQF 449
>gi|302662784|ref|XP_003023043.1| hypothetical protein TRV_02865 [Trichophyton verrucosum HKI 0517]
gi|291187019|gb|EFE42425.1| hypothetical protein TRV_02865 [Trichophyton verrucosum HKI 0517]
Length = 573
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 152/509 (29%), Positives = 241/509 (47%), Gaps = 106/509 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-PNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQYS IYF RL ++ + + W+ + + VL++ +G+ I+GT+Y
Sbjct: 48 QQYSDIYFLRLTRLKPAVAEVAKAAWEGYNIAGEYARRVDRVLDVRQGKLSWIVGTVYMD 107
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ LKPSI+D+ SKE T V + P+ ++EDESGR+ L G+ L + VT
Sbjct: 108 LPLKPSIMDDISKENWTAAPVPQKTYNDPNSKKPTQTMVEDESGRLVLTGSLLQSTFLVT 167
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQ-------KELPLNSG---------------- 178
G+VVA+ G E + G+F V+D+ + PQ +E + G
Sbjct: 168 GVVVAVLGTENADGQFEVVDIKVPDIPPQPARWEREQEPTTDVGVPAKRKHSALEAGSSG 227
Query: 179 --EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG-----DEKEQGIAAEIVHVVIAG 231
+ K + VSGL + + + + LL D++ G+ G D+ ++I ++IAG
Sbjct: 228 SGKSKKIAFVSGLGITGTSGDTVALSLLADYLLGYTGTIPSTDDYIATNPSQISRLIIAG 287
Query: 232 NSIEIPRGLLNGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPND 282
NS+ S+ + + + PI D L+ I +P+ +MPG D
Sbjct: 288 NSLGAKAASTVNDATNSEKRPKKYGYDASAYNASPITLFDSFLSDILPSIPVTLMPGETD 347
Query: 283 PANFSLPQQPLNRCLFPGSATY---------------NTFRSCTNPHCFELDNVRFLGTS 327
PANFSLPQQ ++ + P S Y + TNP +++ RF GTS
Sbjct: 348 PANFSLPQQEIHTAMLPRSKIYCAPIAPKRQALPSEPGWLDNVTNPWEGDIEGWRFWGTS 407
Query: 328 GQTIDDLQKYSEA-------------NDQLEFMERTLRWRHLAPTAPNTL---------- 364
GQ +DD+ +Y +L+ ME L+WR PTAP+T+
Sbjct: 408 GQNVDDVLRYVNLEELEDDEVEDIENGARLKLMEHLLKWRCGVPTAPDTICKSPSHSAHH 467
Query: 365 ----------GCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR-------QLVRL 407
GCYP+ D+DPF+++SCPHV+F GNQ +F++ +++G D VRL
Sbjct: 468 AAGSLLTVDPGCYPYQDKDPFVIQSCPHVFFTGNQPRFQSTIIEGGDWGSDEDSITKVRL 527
Query: 408 VCIPKFSETGVAVVVNLKNLECHTLSFGT 436
+ +PKF ETG V+++ + L + FGT
Sbjct: 528 IALPKFHETGEIVLLDTETLAVEVVKFGT 556
>gi|213410357|ref|XP_002175948.1| DNA polymerase subunit delta-2 [Schizosaccharomyces japonicus
yFS275]
gi|212003995|gb|EEB09655.1| DNA polymerase subunit delta-2 [Schizosaccharomyces japonicus
yFS275]
Length = 452
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 145/433 (33%), Positives = 225/433 (51%), Gaps = 25/433 (5%)
Query: 24 FEIQKETYRGQQYSQIYFARLH-LMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTL 82
F + +Y QQY+ IYFARL+ LM + + W + + VLE+++ + I+GT+
Sbjct: 17 FVLDTNSY-NQQYASIYFARLNKLMPRTIDAARTKWPKYKQLDRVLEVKKDQVAWIVGTV 75
Query: 83 YKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD------HLVLEDESGRVKLGGAELLP 136
Y + LKP++L + + + + +++P++ +ED GRV+ + ++P
Sbjct: 76 YLSLALKPNVLADVTSTHTINTELDDSLYVNPNEADPSNMKCFIEDGFGRVECVLSSVIP 135
Query: 137 SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTS 196
VTG+VVA G E G FLV DV AG+ +P D Y+ L+SGL + S T
Sbjct: 136 YNLVTGVVVAALGHEDEQGLFLVQDVCTAGMG-NISIPRPLQTDCYIALMSGLGLASDTL 194
Query: 197 NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP----RGLLNGQNLASKDQS 252
+ L V+ + G L + A++I +++ GN + P LL + K Q
Sbjct: 195 EHVHVHLAVEFLRGQLPMFADVQ-ASQIARLLLLGNCLASPTVIRENLLTKLAKSKKKQP 253
Query: 253 RLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
+ + P+ D LL ++ + + + +MPG D + LPQQPL+ L S
Sbjct: 254 KRYGYDTSLYDPNPMVHTDNLLYELCSSIDVTLMPGAFDFSTRVLPQQPLHPALLTRSKE 313
Query: 304 Y--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
+ ++ ++ TNP E++ L TSGQ I+DL KY N L ME +L W H+APT P
Sbjct: 314 WLQSSLQTTTNPTWLEIEGRSILATSGQNIEDLHKYYPDNSPLALMEASLNWNHIAPTTP 373
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYPF D+D F+++ PHVY GNQ F T+ S L+ P FSE G V+
Sbjct: 374 DTLWCYPFPDKDVFIIDKMPHVYMCGNQPSFGTKPNNTSKWWLLPAYLGPNFSEPGTLVL 433
Query: 422 VNLKNLECHTLSF 434
+NLKNLE T++F
Sbjct: 434 LNLKNLEVKTVNF 446
>gi|393216600|gb|EJD02090.1| hypothetical protein FOMMEDRAFT_109238 [Fomitiporia mediterranea
MF3/22]
Length = 519
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 152/475 (32%), Positives = 251/475 (52%), Gaps = 73/475 (15%)
Query: 29 ETYRGQQYSQIYFARLHLMRALLYSLVP-NWK------PHLPICTVLELEEGRECVIIGT 81
++YR Q+S IYFARL L++ ++ WK P +P VL++ + + C IIGT
Sbjct: 35 KSYR-HQFSNIYFARLTLLKNIVEKKAKERWKGLSGSPPLVP--RVLDVAKSQVCFIIGT 91
Query: 82 LYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL------- 134
+Y +M KP++L++ ++R ++ P+D +VLED+SGRV+L G L
Sbjct: 92 VYLNMPQKPNVLEDVGRDRYLPEPAPREKYLSPEDEIVLEDDSGRVQLVGEALQRVIDYS 151
Query: 135 --------LPSAY----VTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE--- 179
P+ + V+G+++A G+ETS+G F V DV AG+AP +G+
Sbjct: 152 SSEEANGDKPNGWGNVLVSGVIMAALGRETSSGAFEVKDVCFAGMAPMLFKSPKTGDNME 211
Query: 180 ------DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
D ++ VSGL++G +S + Q+LV++++G G +++ ++I +VIAGNS
Sbjct: 212 VDTEFPDSWIAFVSGLDMGESSSMDPRMQMLVEYLSGEAGAQED--TISQISRLVIAGNS 269
Query: 234 IEIPRGLLNGQN--LASKDQSRLFE---------PIKELDILLTQIAAGVPLDIMPGPND 282
+ + + ++ + + +S+ F P L L +A+ +P+ ++ G D
Sbjct: 270 LAPVTAVADTKSTVVDTGSKSKRFGQEASNFSPVPTNMLGDFLLDVASVMPVHLLAGARD 329
Query: 283 PANFSLPQQPLNRCLFPGSATYNTFRSCTNPHC--FELD-----NVR---FLGTSGQTID 332
P+ LPQQ L R +F T+ F TNP F D + R L SGQ+++
Sbjct: 330 PSGTLLPQQALPRAMFGEVKTFENFSCETNPAWLGFNADPSSGKDARQRAVLVHSGQSVE 389
Query: 333 DLQKY--SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQ 390
D+ KY S +L+ TL+WRH+APTAP+TL CYP+ DPF+++ P +Y Q
Sbjct: 390 DMYKYVPSPPTTRLDLACATLQWRHIAPTAPDTLWCYPYQTTDPFVLKRTPDLYVVSCQP 449
Query: 391 KFETRLLKGSD----------RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
+F TRL+ +D + R+V +P F+ETG V+VN+++LE + FG
Sbjct: 450 EFGTRLVSSNDFGETATSEDGERKCRVVLVPNFNETGCLVLVNMRSLEVKCVEFG 504
>gi|429852039|gb|ELA27194.1| DNA polymerase delta subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 417
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 214/411 (52%), Gaps = 46/411 (11%)
Query: 68 LELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD---DHLVLEDES 124
+ + +G C + GT+Y M LKP+IL++ SK+R + + + D + ++LED+S
Sbjct: 1 MSVRQGELCWVTGTVYMDMPLKPNILEDVSKDRWISAPISTDRYYSDDVEKNQIMLEDDS 60
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-----PLNSGE 179
GR++L G L VTG ++ + G E ++GE V+DV LAPQ P S E
Sbjct: 61 GRIRLVGDVLKSIHLVTGCIIGVMGTENASGELEVIDVKFPDLAPQPSRWSLTQPPPSSE 120
Query: 180 D--------------KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEI 224
D + +VSGL+ G+ S L+ LL++ + G + Q I
Sbjct: 121 DHDMSGTTPSQQKPSSKIAIVSGLSFSGTDASYALELSLLLEFLLGEALSPETQSQITNI 180
Query: 225 VHVVIAGNSIEIPRG--------LLNGQNLASKDQ----SRLFEPIKE--LDILLTQIAA 270
+VI+GNSI NG A+ + + + P+ D L +
Sbjct: 181 SRLVISGNSISTTAANPALKTDDATNGNKKATVKKYGYDASAYNPLPSQLFDEFLADLLP 240
Query: 271 GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT---------FRSCTNPHCFELDNV 321
+P+ +MPG DPAN S PQQP++ +FP + Y F + TNP E+D
Sbjct: 241 SMPVTLMPGAQDPANASYPQQPIHSAMFPRARPYAAGPDAKEAGWFDTTTNPWEAEVDGW 300
Query: 322 RFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCP 381
R LGT GQ +DD+ KY +++D+L ME RWR APTAP+TL YPF D DPF+++ P
Sbjct: 301 RMLGTGGQNVDDVFKYVDSDDRLGMMEAMCRWRCSAPTAPDTLWAYPFQDNDPFVMKEAP 360
Query: 382 HVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
HV+F G Q +F TR+++G+D Q RL+ +P FSET V+V+ + LE +
Sbjct: 361 HVFFVGCQPEFGTRVIQGADGQTTRLITVPSFSETKEIVLVDTETLEVSKV 411
>gi|156088409|ref|XP_001611611.1| DNA polymerase alpha subunit B family protein [Babesia bovis]
gi|154798865|gb|EDO08043.1| DNA polymerase alpha subunit B family protein [Babesia bovis]
Length = 425
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 155/444 (34%), Positives = 229/444 (51%), Gaps = 61/444 (13%)
Query: 20 LDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGR---- 74
L + F I Y Q Y+ +L +R + L+ + W+ + T + GR
Sbjct: 13 LSQRFRIIGVPYSNQYYT-YSMEKLERLRPCFFPLIESRWRDTIIDTTDSVPKPGRYVYV 71
Query: 75 --------ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
+CVIIGTLYK MKL+PS L+EYS+E +K + PDD L +ED+S R
Sbjct: 72 PSIKDAKGDCVIIGTLYKDMKLRPSPLEEYSEELKLRQPMK-AKYTSPDDRLFIEDQSIR 130
Query: 127 VKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLV 186
V + G+ L P VTG+V+ L G+ GEF D + G P L S E+KYV V
Sbjct: 131 VAIRGSILDPQRLVTGLVICLKGRINDQGEFECEDYMHPG-PPLMCLEPRS-EEKYVAFV 188
Query: 187 SGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246
SGL++G T++ LL D I G ++ ++V +VIAGN I
Sbjct: 189 SGLDLGGQTTSRSALLLLRDFI---FGSTPLSELSRKVVRLVIAGNGI------------ 233
Query: 247 ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT 306
D S L + D+ Q+A +P+D+MPG +DP+N ++PQQP++ S+ Y++
Sbjct: 234 GKCDVSAL----SQCDVYFAQLAGSIPVDLMPGNDDPSNRNIPQQPIHPTFLEHSSRYSS 289
Query: 307 FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND-------QLEFMER---TLRWRHL 356
F+S TNP+ F +D +RFLGTS Q + + +YS N+ L F+E T R +
Sbjct: 290 FQSTTNPYAFSVDGIRFLGTSSQAVRGICEYSHLNELGMLRDSNLTFLEALRLTASARFI 349
Query: 357 APTAPNTLGCYP------FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCI 410
APTAP+TLGC+P T+ + F PHV F+GN ++ T + G L RL+C+
Sbjct: 350 APTAPDTLGCHPEAAVLHLTEDNEF-----PHVMFSGNSHEYATSTMDG----LPRLICV 400
Query: 411 PKFSETGVAVVVNLKNLECHTLSF 434
P FS+ ++V+L LE + F
Sbjct: 401 PAFSKQPCVILVSLSTLEPRLIRF 424
>gi|401624997|gb|EJS43023.1| hys2p [Saccharomyces arboricola H-6]
Length = 490
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 240/461 (52%), Gaps = 60/461 (13%)
Query: 23 PFEI-QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNW--------KPHLPICTVLELEE 72
PF++ K+ QY +Y RL R +L W K L VL+++
Sbjct: 39 PFQLCYKDRNYASQYYHMYQYRLKTFRERVLEECDKRWDAGFTLNGKLVLKKNKVLDIQG 98
Query: 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKLG 130
+ C IG++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 99 HQPCWCIGSIYCEMKYKPNVLDEVINDTYGAPDLAKSYTDKEGGSDEIMLEDESGRVLLV 158
Query: 131 GAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK---YVVLVS 187
G + + ++TG+VV + G E AG F VLD+ Q LP S + + LVS
Sbjct: 159 GDFIRSAPFITGVVVGILGMEADAGTFQVLDICYPTPLLQNPLPTPSATPQPRGQIALVS 218
Query: 188 GLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246
GLN+ + + + L + ++L + + G + + ++ ++I ++I GNS++ N
Sbjct: 219 GLNLNNASPDRLLKLEILREFLMGGISGKIDE--ISQIGRLLICGNSVDF------DINS 270
Query: 247 ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS----- 301
SKD+ L + E L I + +D+MPG NDP++ SLPQQP ++ LF S
Sbjct: 271 VSKDE--LVNSLTEFSKFLHNILPSISVDVMPGTNDPSDKSLPQQPFHKSLFDESLESFF 328
Query: 302 --ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----------SE---ANDQ-- 343
+ TNP+ F + V L SG+ I+D+ KY SE A DQ
Sbjct: 329 HGSNKEILNLVTNPYEFCYNGVDVLAISGKNINDICKYVIPSNEKVDNDSENKVAQDQNS 388
Query: 344 ----------LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFE 393
L+ ME T++W+++APTAP+TL CYP+T++DPF+++ PHVY GNQ F
Sbjct: 389 DDFKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTEKDPFVLQKWPHVYVVGNQPNFG 448
Query: 394 TRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
TRL+K D+ +R++ +P+FS TGV V++NL+ LE T+
Sbjct: 449 TRLMKIGDKS-IRIISVPEFSSTGVVVLLNLETLEVETVKI 488
>gi|85101224|ref|XP_961110.1| hypothetical protein NCU03763 [Neurospora crassa OR74A]
gi|16944625|emb|CAC28660.2| related to DNA POLYMERASE DELTA SMALL SUBUNIT [Neurospora crassa]
gi|28922649|gb|EAA31874.1| hypothetical protein NCU03763 [Neurospora crassa OR74A]
Length = 525
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 171/504 (33%), Positives = 259/504 (51%), Gaps = 77/504 (15%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHL 62
D EA LQR+ Y L F+++K QQY+ IYF RL +R A+ + W+ +
Sbjct: 19 DAPEA-LQRQITNYKPL-HTFKLEKTRPYQQQYADIYFLRLTKIRPAVEAAASAAWEGTV 76
Query: 63 -------PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFM-H 113
+ VL++ +G C + GT+Y M LKPSIL++ SK+R + P H + +
Sbjct: 77 LGGEKVKRVERVLDVRQGELCWVAGTVYMDMPLKPSILEDVSKDRWISAPTSVGHYYSGN 136
Query: 114 PDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL 173
+D ++LED+SGR++L G L VTG +VA+ G E + GEF V+D+L A L PQ E
Sbjct: 137 GEDSVMLEDDSGRIRLVGNALQNHFMVTGCIVAVMGTENANGEFEVIDLLFAELPPQPER 196
Query: 174 --------PLNSGED-----------------KYVVLVSGLNVGSG-TSNPLQFQLLVDH 207
+S ED K + LVSGL + TS ++ LL+++
Sbjct: 197 WSLSKGKKEADSSEDVEMMDASFSRQSHKPSSKKIALVSGLEFSNADTSYAMELNLLLEY 256
Query: 208 ITGHLGDEKEQGIA-AEIVHVVIAGNSIEIPRGL-------LNGQNLASKDQSRLFE--- 256
+ G D Q + I ++IAGNSI + + +K Q ++ +
Sbjct: 257 LLGEALDPSVQRDELSHITRLIIAGNSISTTAAEQAKPAAAFDTTTVTNKFQPQIKKYGY 316
Query: 257 --------PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY---- 304
P + LD L+ + +P+ ++PG DPAN S PQQP++ +FP S TY
Sbjct: 317 DSSSYNPVPSQLLDSFLSDLLPTMPVTLLPGALDPANASYPQQPIHPAMFPQSRTYMPPP 376
Query: 305 ----------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFME 348
F + TNP E++ R LGT GQ +DD+ KY E+ D+L ME
Sbjct: 377 KAGAGKDRDVPGEEEPGWFDNVTNPWEGEIEGWRVLGTGGQNLDDVFKYVESEDRLGMME 436
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
RWR +APTAP+TL YPF + +PF+++ CPH++F G Q +F T+++ G D Q VRL+
Sbjct: 437 AMCRWRCVAPTAPDTLWSYPFQEDEPFVIKECPHLFFVGCQPEFGTKVIHGPDGQAVRLI 496
Query: 409 CIPKFSETGVAVVVNLKNLECHTL 432
+P FSET V+V+ + L+ +
Sbjct: 497 AVPSFSETREVVLVDTETLDVERV 520
>gi|295672612|ref|XP_002796852.1| DNA polymerase subunit delta-2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282224|gb|EEH37790.1| DNA polymerase subunit delta-2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 576
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 219/469 (46%), Gaps = 101/469 (21%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLED 122
VL++ +G C + GT+Y + LKP+ILD+ SKE T ++ P + +LED
Sbjct: 100 VLDVRQGELCWVAGTVYMDLPLKPNILDDISKEHWTAAPPSRKTYLDPSNQASAKTMLED 159
Query: 123 ESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG---- 178
ESGR++L G L + VTG +VA+ G E G+F V+D+ L Q E S
Sbjct: 160 ESGRLQLTGTLLQSALLVTGAIVAVLGTENVNGDFEVIDIKVPDLPAQPERWERSSSAPQ 219
Query: 179 --------------------EDKYVVLVSGLNVGSGTSNPLQFQLLVD--------HITG 210
++K + + + + + + + LL D H+T
Sbjct: 220 EFDTRKAWLLRTHTWWHRGKKEKKIAMSAAFGITGTSGDTVALSLLTDYLLGYNEPHLTA 279
Query: 211 HLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL---------------- 254
+ +++I ++IAGNS+ +L+ Q+ A S +
Sbjct: 280 QTNETNSPPFSSQITRLIIAGNSLG--SSILSTQSEAENGDSTITAAKKRHGPKKYGYDA 337
Query: 255 ----FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY------ 304
PI D L +I +P+ +MPG DPANFSLPQQ ++R +FP S Y
Sbjct: 338 AAYNASPINHFDTFLAEILPSIPITLMPGETDPANFSLPQQEIHRAMFPRSKAYCSAARP 397
Query: 305 ----------NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------S 338
+ TNP +++ RF G SGQ +DD+ +Y
Sbjct: 398 GTTGEPTAEPGWLDNVTNPWEGDVEGWRFWGCSGQNVDDMLRYIDLEAEGDGLGGNESDR 457
Query: 339 EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK 398
+ +L ME LRWR PTAP+TL CYP+ DPF+++SCPHV+FAGNQ F T +++
Sbjct: 458 DGEARLRLMEAMLRWRCAVPTAPDTLWCYPYQTHDPFILQSCPHVFFAGNQPSFRTAIVE 517
Query: 399 ----------GSDRQL-VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
G ++ + VR++ +PKFSETG V+V++ LE + FGT
Sbjct: 518 SSAAVSSSGIGDEQGMRVRIITLPKFSETGEIVLVDVDTLEVEVVRFGT 566
>gi|401842457|gb|EJT44667.1| POL31-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 514
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/460 (32%), Positives = 235/460 (51%), Gaps = 59/460 (12%)
Query: 23 PFEI-QKETYRGQQYSQIYFARLHLMRALLYSLVPN-W--------KPHLPICTVLELEE 72
PF++ KE G QY +Y RL R + N W K L VL+++
Sbjct: 64 PFQLCHKERDYGSQYYHMYQYRLKTFRDRVLKECDNRWDAGFTLNGKLVLKKDKVLDIQG 123
Query: 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKLG 130
+ C +G++Y MK KP++L+E + P L K + D ++LEDESGRV L
Sbjct: 124 NQPCWCVGSIYCEMKYKPNVLEEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLV 183
Query: 131 GAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY---VVLVS 187
G + + ++TG+VV + G E AG F VLD+ Q LP + + LVS
Sbjct: 184 GDFIRSAPFITGVVVGILGMEAEAGTFQVLDICYPTPLVQNPLPTRNASSHSRGKIALVS 243
Query: 188 GLNVGSGTSNP-LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246
GLN+ + + + L+ ++L + + G + D+ + +EI ++I GNS++ ++
Sbjct: 244 GLNLNNTSPDRILRLEILREFLMGRISDKIDD--VSEIGRLLICGNSVDF--------DI 293
Query: 247 ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS----- 301
S + L + EL L I + +D+MPG NDP++ SLPQQP ++ LF S
Sbjct: 294 RSVTKDELTTSLTELSRFLHNILPSISVDMMPGTNDPSDKSLPQQPFHKSLFDKSLESYF 353
Query: 302 --ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----------------SEAND 342
+ TNP+ F V L SG+ I+D+ KY E ND
Sbjct: 354 NDSNKEILNLVTNPYEFTYSGVDVLAISGKNINDICKYVIPSNEIVKEGQEKFMQGENND 413
Query: 343 --------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET 394
+++ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY GNQ F T
Sbjct: 414 DFKDNIEHRMDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYVVGNQPYFGT 473
Query: 395 RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
R + + +R++ +P+FS TGV V+++L+ LE T+
Sbjct: 474 RSIDIGGKN-IRIISVPEFSSTGVVVLLDLETLEVETVKI 512
>gi|68066984|ref|XP_675463.1| DNA polymerase delta small subunit [Plasmodium berghei strain ANKA]
gi|56494663|emb|CAH94472.1| DNA polymerase delta small subunit, putative [Plasmodium berghei]
Length = 477
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 236/463 (50%), Gaps = 58/463 (12%)
Query: 9 RLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICT-- 66
++++K Y F + TY QQ+S IY R+++MR LL + + +
Sbjct: 36 KIKKKHYNYENNSNNFILTNPTYT-QQFSSIYNIRINIMRKLLMKTIEKLNVGISDDSKG 94
Query: 67 -----VLELEEGRE-----------------------CVIIGTLYKHMKLKPSILDEYSK 98
V E E G++ C IGT++K M L+PSIL EY
Sbjct: 95 IIKQEVKEPENGQKSKGGENEQVKVLQYLKDIKINEKCYCIGTIFKKMDLRPSILKEYIS 154
Query: 99 ERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFL 158
E V N+ D L LEDE+ R+KL G + YVTG+ + + G S G
Sbjct: 155 ELDYLDTV--INYSQYQDILFLEDETARLKLEG-NINSDNYVTGLTIIIKGVGMSNGSLY 211
Query: 159 VLDVLDAGLAPQKELP-LNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKE 217
V +++ + L P+ E+P S +DKY++ VSGL + +N LL + I G GD
Sbjct: 212 VEELIYSYL-PKIEIPKCISNDDKYILFVSGLYISEQNTNINNISLLRNFILGLHGD--- 267
Query: 218 QGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIM 277
+ I+ ++ +VI GNS+ G +N I +D L+ + + V +D+M
Sbjct: 268 KFISQNLIRLVIVGNSL----GNINSD----------VNDINVIDTFLSSLCSSVYVDLM 313
Query: 278 PGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY 337
PG DP++ LPQQP F S Y++F+ TNP+ F +DNV SG+ ++++ Y
Sbjct: 314 PGEKDPSDAILPQQPFPNMFFKKSKKYDSFQCVTNPYMFSIDNVNICCMSGEPVNNIISY 373
Query: 338 SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES---CPHVYFAGNQQKFET 394
S+ +L+ ++ + R L+PT+P+TLGCYP+ D DPF ++ PH++ GN K E
Sbjct: 374 SKVT-KLDALKMIAKSRILSPTSPDTLGCYPYIDNDPFCIKDDNIYPHIFVNGNCSKLEM 432
Query: 395 RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
+ L+ ++++L LVC+P FS T A+ +N+KN+E +SF Q
Sbjct: 433 QYLE-NEKKLPFLVCLPDFSITPKALAINIKNMEYKIISFNIQ 474
>gi|226292616|gb|EEH48036.1| DNA polymerase delta small subunit [Paracoccidioides brasiliensis
Pb18]
Length = 526
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 226/473 (47%), Gaps = 75/473 (15%)
Query: 34 QQYSQIYFARLHLMRALLYSL-VPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ + + V +W+ + VL++ +G C + GT+Y
Sbjct: 49 QQYADIYFLRLARLKPAVAEIAVASWEGFNIAGEYARRVDRVLDVRQGELCWVAGTVYMD 108
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ P + +LEDESGR++L G L + VT
Sbjct: 109 LPLKPNILDDISKEHWTAAPPSRKTYLDPSNQASAKTMLEDESGRLQLTGTLLQSALLVT 168
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQKE-------LPLNSGEDKYVVLVSGLNVGSG 194
G +VA+ G E G+F V+D+ L Q E P S + K+ L G
Sbjct: 169 GAIVAVLGTENVNGDFEVIDIKVPDLPAQPERWERSSAAPQESAKRKHDSLE---QTRGG 225
Query: 195 TSNPLQFQLLVDH--ITGHLGDEKEQGIAAEIVHVV-----IAGNSIEIPRGLLNGQNLA 247
T + +V ITG GD E I E + + G + R GQ
Sbjct: 226 TGGKRKKIAMVSGLGITGTSGDTPE--IPLEAAYSLPNLKPKMGIPLSQQRRNATGQKKY 283
Query: 248 SKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT 306
D + PI D L +I +P+ +MPG DPANFSLPQQ ++R +FP S Y +
Sbjct: 284 GYDAAAYNASPINHFDTFLAEILPSIPITLMPGETDPANFSLPQQEIHRAMFPRSKAYCS 343
Query: 307 ----------------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKY------------- 337
+ TNP +++ RF G SGQ +DD+ +Y
Sbjct: 344 AARPGTTGEPTAEPGWLDNVTNPWEGDVEGWRFWGCSGQNVDDMLRYIDLETEGDGLGGN 403
Query: 338 ---SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET 394
+ +L ME LRWR PTAP+TL CYP+ DPF ++SCPHV+FAGNQ F T
Sbjct: 404 ESDKDGEARLRLMEAMLRWRCAVPTAPDTLWCYPYQTHDPFTLQSCPHVFFAGNQPSFRT 463
Query: 395 RLL----------KGSDRQL-VRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
++ G ++ + VR++ +PKFSETG V+V++ LE + FGT
Sbjct: 464 AIVESSAAVSSSGTGDEQGMRVRIITLPKFSETGEIVLVDVDTLEVEVVRFGT 516
>gi|367038615|ref|XP_003649688.1| hypothetical protein THITE_2108468 [Thielavia terrestris NRRL 8126]
gi|346996949|gb|AEO63352.1| hypothetical protein THITE_2108468 [Thielavia terrestris NRRL 8126]
Length = 518
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/488 (32%), Positives = 246/488 (50%), Gaps = 70/488 (14%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHL------ 62
L+R + Y LD F + K+ QQ++ IYF RL ++ + + W+ +
Sbjct: 24 LERTASNYKSLDT-FSLPKDRQYQQQFADIYFLRLTKIKPAVEEVASAAWEGTILGGETA 82
Query: 63 -PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFM-HPDDHLV 119
+ VL++ +G+ C + GT+Y M LKPS+L++ SK+R + P H + + + ++
Sbjct: 83 TKVDRVLDVRQGQLCWVAGTVYMDMPLKPSVLEDVSKDRWISAPTTVGHYYSENGGESIM 142
Query: 120 LEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE------- 172
LED+SGR++L GA L VTG ++A+ G E GEF V+D+ A L PQ E
Sbjct: 143 LEDDSGRIRLVGAILKDYFLVTGCIIAVMGTENVNGEFEVIDLKFADLPPQPERWSLSKP 202
Query: 173 ---------------------LPLNSGEDKYVVLVSGLNV-GSGTSNPLQFQLLVDHITG 210
+P S K + LVSGL G+ TS ++ LL++ + G
Sbjct: 203 SAADGASKKPKLKGEDVEMADVPAASRPSKKIALVSGLEFSGTDTSYAMELNLLLEFLLG 262
Query: 211 HLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFE---------PIKEL 261
D Q I ++IAGNSI P A K + + P + L
Sbjct: 263 EALDPSAQSELTHISRLIIAGNSIAKPSHDDATTTAAEKKPHKKYGYDSSSYNPLPSQLL 322
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT--------------- 306
D L+ + +P+ ++PG DPAN S PQQP++ +FP S +Y
Sbjct: 323 DTFLSTLLPTLPITLLPGELDPANTSYPQQPIHPAMFPRSRSYTAAPVTAPEEAQQQQQQ 382
Query: 307 ------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
+ TNP E++ R LGT GQ +DD+ KY +++D+L ME RWR APTA
Sbjct: 383 QKQPGWLDNVTNPWEGEVEGWRVLGTGGQNLDDICKYIDSDDRLGMMEAMCRWRCCAPTA 442
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
P+TL YPF + +PF++ CPH+YF G Q +F T++++G Q+VRL+ +P F+ T V
Sbjct: 443 PDTLWAYPFQEDEPFVMRECPHLYFVGCQPEFGTKVIEGPQGQMVRLILVPSFAATREIV 502
Query: 421 VVNLKNLE 428
+V+ + L+
Sbjct: 503 LVDTETLD 510
>gi|118399515|ref|XP_001032082.1| hypothetical protein TTHERM_00691170 [Tetrahymena thermophila]
gi|89286420|gb|EAR84419.1| hypothetical protein TTHERM_00691170 [Tetrahymena thermophila
SB210]
Length = 488
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 146/446 (32%), Positives = 233/446 (52%), Gaps = 68/446 (15%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPIC-TVLELEEGRECVIIGTLYKHMKLKPSIL 93
QY + YF RL ++ S + +PIC +L ++ G V+I TLYK MKLKP++L
Sbjct: 53 QYWKTYFKRLDQIKEYFMSNFS--EESIPICDKILNIKVGEHQVVIATLYKDMKLKPNVL 110
Query: 94 DEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVT------------ 141
S++R N+M DD + +ED++GR++L + ++
Sbjct: 111 -TVSQQRD--------NYMADDDVIYMEDQTGRMQLAFNNTQFKSSISKPKTIDVKNLTS 161
Query: 142 GIVVALHGKETSA--GEFLVLDVLDAGLAPQKEL-----PLNSGED-------------- 180
G+VV + G + A F V ++ L Q+ + PL G+D
Sbjct: 162 GLVVGIRGIQRVAEINVFEVEEIYCCDLPHQEHILKIPAPLTYGDDSHLENNNNFHDLSH 221
Query: 181 --------KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHL-GDEKEQGIAAEIVHVVIAG 231
K+++L SGLN+ QL HL G + + + + VV+AG
Sbjct: 222 YIKNYQDHKFILLTSGLNIDPNVDRYTLIQL-----KNHLFGLTNLKPLMSRVCRVVMAG 276
Query: 232 NSIEIPRGL---LNGQNLASKDQSRLFEPIK----ELDILLTQIAAGVPLDIMPGPNDPA 284
N IE + L L G + +L+ I ++D + +IA V LDIMPG DPA
Sbjct: 277 NLIEKNKDLDYNLVGSYRMQEQFKQLYAEIAKKMHDVDKNINEIAGNVCLDIMPGDKDPA 336
Query: 285 NFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ- 343
LPQQ LN+C F S + T +NP+ FE +N++ LG SGQ++ D++KYS +DQ
Sbjct: 337 QAFLPQQSLNKCYFASSKSIPTLNLVSNPYKFEQENIQILGVSGQSMLDIKKYSNYSDQD 396
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLL-KGSDR 402
++ ++ L WRH++PT+P+TL C+PF + DPF+++ PHVYF+GN KFET+++ + + +
Sbjct: 397 IDILQSHLLWRHISPTSPDTLQCFPFHESDPFILDELPHVYFSGNSPKFETKMVYEENTK 456
Query: 403 QLVRLVCIPKFSETGVAVVVNLKNLE 428
+ RL+C+P S + V++NL NL+
Sbjct: 457 KRCRLICVPALSASNSFVIMNLANLD 482
>gi|365759921|gb|EHN01679.1| Pol31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 489
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 149/458 (32%), Positives = 235/458 (51%), Gaps = 59/458 (12%)
Query: 23 PFEI-QKETYRGQQYSQIYFARLHLMRALLYSLVPN-W--------KPHLPICTVLELEE 72
PF++ KE G QY +Y RL R + N W K L VL+++
Sbjct: 39 PFQLCHKERDYGSQYYHMYQYRLTTFRDRVLKECDNRWDAGFTLNGKLVLKKDKVLDIQG 98
Query: 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKLG 130
+ C +G++Y MK KP++L+E + P L K + D ++LEDESGRV L
Sbjct: 99 NQPCWCVGSIYCEMKYKPNVLEEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLV 158
Query: 131 GAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY---VVLVS 187
G + + ++TG+VV + G E AG F VLD+ Q LP + + LVS
Sbjct: 159 GDFIRSAPFITGLVVGILGMEAEAGTFQVLDICYPTPLVQNPLPTRNASSHSRGKIALVS 218
Query: 188 GLNVGSGTSNP-LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246
GLN+ + + + L+ ++L + + G + D+ + +EI ++I GNS++ ++
Sbjct: 219 GLNLNNTSPDRILRLEILREFLMGRISDKIDD--VSEIGRLLICGNSVDF--------DI 268
Query: 247 ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS----- 301
S + L + EL L I + +D+MPG NDP++ SLPQQP ++ LF S
Sbjct: 269 RSVTKDELTTSLTELSRFLHNILPSISVDMMPGTNDPSDKSLPQQPFHKSLFDKSLESYF 328
Query: 302 --ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----------------SEAND 342
+ TNP+ F V L SG+ I+D+ KY E ND
Sbjct: 329 NDSNKEILNLVTNPYEFTYSGVDVLAISGKNINDICKYVIPSNENVKEGQEKFMQGENND 388
Query: 343 --------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET 394
+++ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY GNQ F T
Sbjct: 389 DFKDNIEHRMDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYVVGNQPYFGT 448
Query: 395 RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
R + + +R++ +P+FS TGV V+++L+ LE T+
Sbjct: 449 RSIDIGGKN-IRIISVPEFSSTGVVVLLDLETLEVETV 485
>gi|358401336|gb|EHK50642.1| hypothetical protein TRIATDRAFT_297022 [Trichoderma atroviride IMI
206040]
Length = 404
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 213/404 (52%), Gaps = 54/404 (13%)
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGAELLPSAYVTGI 143
M+LKP+IL++ SK+R + + + D D ++LED+SGRV+L G L VTG
Sbjct: 3 MRLKPNILEDVSKDRWLSAPISSQKYYSDDGSDQIMLEDDSGRVRLVGDVLNNIPLVTGC 62
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKEL-----------------------PLNSGED 180
++A+ G E + GEF V+D+ LAPQ E PL SG
Sbjct: 63 IIAVMGTENTNGEFEVIDLKVPDLAPQPERWALSKPPTASGKSEGEDTEMTDSPLQSG-G 121
Query: 181 KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI--- 236
K + +VSGL+ G+ S L+ LL++++ G EQ A++I ++IAGNSI
Sbjct: 122 KKIAIVSGLSFSGTDASYDLELDLLLEYLLGEALGPDEQANASQISRLIIAGNSISTVKE 181
Query: 237 ---------PRGLLNGQNLASKDQSRLFEPIKE--LDILLTQIAAGVPLDIMPGPNDPAN 285
Q D S + P+ D ++++ +P+ ++PG DPAN
Sbjct: 182 KDDDEGGEDEDEKKTVQKKYGYDAS-AYNPVPSQLFDQFVSELLPSIPVTLLPGAQDPAN 240
Query: 286 FSLPQQPLNRCLFPGSATYNT------------FRSCTNPHCFELDNVRFLGTSGQTIDD 333
S PQQP++ +FP S Y F TNP E++ R LGT GQ +DD
Sbjct: 241 ASYPQQPVHSAMFPLSRAYAAELGAKAASQPGWFDPVTNPWEAEVEGWRILGTGGQNVDD 300
Query: 334 LQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFE 393
+ KY E++D+L ME RWR APTAP+TL YPF + DPF++++CPHVYF G Q +F
Sbjct: 301 VFKYVESDDRLGMMEAMCRWRCCAPTAPDTLWSYPFQEDDPFVLKTCPHVYFVGCQPEFA 360
Query: 394 TRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
TR++ G D Q VRL+ +P FS+T V+++ + LE + ++
Sbjct: 361 TRVIHGPDGQSVRLIAVPSFSKTKEFVLMDTETLEVTRVKIASR 404
>gi|256270211|gb|EEU05433.1| Pol31p [Saccharomyces cerevisiae JAY291]
Length = 487
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 237/457 (51%), Gaps = 59/457 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERILKECDKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +GT+Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGTIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+V+ + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVLGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNSSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L + + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNVLPSISVDIMPGTNDPSDKSLPQQPFHKLLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY SE+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKIEESESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETV 483
>gi|340914791|gb|EGS18132.1| DNA polymerase delta small subunit-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 526
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 160/491 (32%), Positives = 244/491 (49%), Gaps = 80/491 (16%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHL-------PICTVLELEEGRE 75
F + + QQY+ IYF RL ++ + ++ W+ + + VL++ +G+
Sbjct: 37 FNLPRHRQYHQQYADIYFLRLTKLKPAVEAVAREAWEDTMIGGEIARRVERVLDVRQGQL 96
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERST-TPLVKPHNFMHPDD----HLVLEDESGRVKLG 130
C ++GT+Y M LKPS+L++ SK+R P+ H F DD ++LED+SGR++L
Sbjct: 97 CWMVGTVYMDMPLKPSVLEDISKDRWIGNPITTGHYFQ--DDGSGTTIMLEDDSGRIRLV 154
Query: 131 GAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-----PLNSG----ED- 180
G+ L VTG ++A+ G E GEF V+D+ A L PQ E P + G ED
Sbjct: 155 GSRLQDFFLVTGCIIAVLGTENVNGEFEVIDLKFADLPPQPERWALTKPPSKGGRKNEDI 214
Query: 181 --------KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIA-AEIVHVVIA 230
K + +VSGL G TS+ + LL++ + G Q ++I ++IA
Sbjct: 215 EMADSKPSKKIAIVSGLEFSGYDTSHAMDLNLLLEFLLGDALTPSTQATELSQISRLIIA 274
Query: 231 GNSI----EIPRGLLNGQNLASKDQ---------SRLFEPIKE--LDILLTQIAAGVPLD 275
GNS+ P +N + S F P+ LD L+ + +P+
Sbjct: 275 GNSMGDSTHNPSTTAYSRNPHVPPKPHVKKYGYDSSSFNPLPSQLLDQFLSTLLPTMPVT 334
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNT----------------------------- 306
++PG DPA S PQQP++ +FP + T+
Sbjct: 335 LLPGILDPATASYPQQPIHSAMFPRARTFGPTPKPPPPPPPPGKEAEAAQQEMQEEKEPG 394
Query: 307 -FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLG 365
F + TNP E++ RFLGT GQ +DD+ KY ++ D+L ME RWR APTAP+TL
Sbjct: 395 WFDAVTNPWEGEIEGWRFLGTGGQNLDDICKYIDSEDRLGMMEAMCRWRCTAPTAPDTLW 454
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLK 425
YPF + +PF + CPHVYF G Q +F TR+++G Q VRL+ +P F+ T V+V+ +
Sbjct: 455 AYPFQEDEPFTMLECPHVYFIGCQPQFGTRVIEGPQGQTVRLILVPSFASTREIVLVDAE 514
Query: 426 NLECHTLSFGT 436
LE T+ T
Sbjct: 515 TLEVSTVKIST 525
>gi|401408277|ref|XP_003883587.1| hypothetical protein NCLIV_033420 [Neospora caninum Liverpool]
gi|325118004|emb|CBZ53555.1| hypothetical protein NCLIV_033420 [Neospora caninum Liverpool]
Length = 626
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/507 (30%), Positives = 239/507 (47%), Gaps = 103/507 (20%)
Query: 22 EPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPI--CTVLELEEGRECVII 79
E F ++ Y+ QQYS +Y++RL + L+ + P + I C + +++ G++CVI+
Sbjct: 114 ERFVVRPRKYQ-QQYSAVYYSRLAALSDTLFKQAESRWPGVCIHPC-IRDVQTGQQCVIV 171
Query: 80 GTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL---------- 129
GTL+K M LKPS L EY + V P++F+ D L LED++ RV+L
Sbjct: 172 GTLFKDMVLKPSALKEYLDDIQVQ--VTPNSFLSDSDSLFLEDQTARVRLVVDAAPPASS 229
Query: 130 --------------------GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
G +L + VTG++VA+ G T G FLV D G P
Sbjct: 230 DADEETAEETHAEGDAREETEGHQLRVNGVVTGLIVAVRGVATDNGRFLVQDFCLGGAPP 289
Query: 170 Q-------------KELPLNSG-------EDKYVVLVSGLNVGSGTSNPLQFQLLVDHIT 209
L L G + K+V VS L +G T +P QLL D +
Sbjct: 290 VPPLPRRVPPAETPARLALPDGALGDVDLDSKFVAFVSDLRIGDETGDPAPLQLLRDFLL 349
Query: 210 GHLGDEKEQGIAAEIVHVVIAGNSIE--------IPRGLLNGQ-NLASKDQSRLFEPIKE 260
G G + +A+ +V ++IAGN++ +P L + AS + + ++E
Sbjct: 350 GAFGGPFKCRLASRVVRLIIAGNALSAVRKPPATVPPALSSSPLKQASATHASVKATLQE 409
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
D+ L+Q+A+ +P+D+MPG DP +SLPQQPL+ L P S TY + R +NPH F LD
Sbjct: 410 ADVFLSQLASSIPIDLMPGSGDPTTYSLPQQPLHAALLPISRTYGSIRGVSNPHAFSLDK 469
Query: 321 V-------------RFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
V RF+G+SGQ + ++ +S+ + LE + R LAPTAP++L Y
Sbjct: 470 VVVAWCAFFLPFQIRFIGSSGQPVSNVCAFSDLS-PLEALRLCAEGRCLAPTAPDSLSLY 528
Query: 368 PFTDRDPFLVE--SCPHVYFAGNQQKFETRLLK----------------------GSDRQ 403
PF DP + HVYF+ N + L+ D +
Sbjct: 529 PFVREDPCCIAPPDYHHVYFSANHEALSFERLQKITRNVQTTSADGAEKAMDVDEAEDSE 588
Query: 404 LVRLVCIPKFSETGVAVVVNLKNLECH 430
L+CIP F++T V+V+L++L H
Sbjct: 589 GPLLLCIPSFAKTSTLVLVDLQSLAVH 615
>gi|349579196|dbj|GAA24359.1| K7_Hys2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 487
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 235/459 (51%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y Q Y IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDYDSQYY-HIYQYRLKTFRERILKECDKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +GT+Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGTIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L I + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNILPSISVDIMPGTNDPSDISLPQQPFHKSLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGENINDICKYVIPSNDNGESENKVEEGESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETVKI 485
>gi|6322465|ref|NP_012539.1| Pol31p [Saccharomyces cerevisiae S288c]
gi|1170421|sp|P46957.1|DPOD2_YEAST RecName: Full=DNA polymerase delta small subunit; AltName:
Full=Hydroxyurea-sensitive protein 2
gi|854579|emb|CAA60928.1| ORF YJR83.7 [Saccharomyces cerevisiae]
gi|1015630|emb|CAA89528.1| HUS2 [Saccharomyces cerevisiae]
gi|285812899|tpg|DAA08797.1| TPA: Pol31p [Saccharomyces cerevisiae S288c]
gi|392298434|gb|EIW09531.1| Pol31p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 487
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 236/459 (51%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L I + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETVKI 485
>gi|45184692|ref|NP_982410.1| AAL132Cp [Ashbya gossypii ATCC 10895]
gi|44980038|gb|AAS50234.1| AAL132Cp [Ashbya gossypii ATCC 10895]
Length = 415
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 218/428 (50%), Gaps = 44/428 (10%)
Query: 35 QYSQIYFARLHLMRA-LLYSLVPNW--------KPHLPICTVLELEEGRECVIIGTLYKH 85
Q+ Q+Y RL+ R +L + W KP + VL+++ G C +GT+Y
Sbjct: 2 QFYQMYAYRLNESRKRVLANCQRKWDDGFRIQGKPVVQKAKVLDIQAGEPCWCVGTIYCE 61
Query: 86 MKLKPSILDEYSKER-STTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIV 144
MK KP++L+E + T VK + D ++LEDESGRV L G + + +VTG V
Sbjct: 62 MKYKPNVLEEVVNDTYGTKAPVKSYTDPEGTDEIMLEDESGRVLLVGDIITSTPFVTGTV 121
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
V + G E AG F V+D+ PQ PL K V L+SG+ S ++P L
Sbjct: 122 VGVLGMEAEAGTFQVVDICYPQAIPQA--PLVRAPGKSVALISGICAAS--NDPKLSLKL 177
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
GD + G A + ++I G+S+ + + + + + EL
Sbjct: 178 RLLQDLLSGDIGDTGSIASVARLIICGDSV------------GTCESNSIGGALDELGSF 225
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF-----PGSATYNT--FRSCTNPHCFE 317
+ +P+ I+PG NDP+ SLPQQPL++ LF P A N+ F S TNP+ F+
Sbjct: 226 MANTLTSLPITILPGANDPSERSLPQQPLHKALFKQALKPYFAEVNSEVFESVTNPYWFD 285
Query: 318 LDNVRFLGTSGQTIDDLQKY-----------SEANDQLEFMERTLRWRHLAPTAPNTLGC 366
L+ ++ L +SGQ +DD+ KY +L+ +E +L+W+++APTAP+TL C
Sbjct: 286 LEGIQVLVSSGQNVDDMCKYVIPYLGTEQLRDTIEHRLDLIEASLKWQNIAPTAPDTLWC 345
Query: 367 YPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
YP+ D DPF++ PHVY GNQ + R + + V L+ +PKFS +G V+++L
Sbjct: 346 YPYKDNDPFIMNEWPHVYIIGNQHAYGYRKVLLENEVEVVLITLPKFSSSGQFVILDLDT 405
Query: 427 LECHTLSF 434
L ++
Sbjct: 406 LNAEVITI 413
>gi|151945082|gb|EDN63333.1| DNA polymerase delta subunit [Saccharomyces cerevisiae YJM789]
gi|190409493|gb|EDV12758.1| DNA polymerase delta subunit [Saccharomyces cerevisiae RM11-1a]
gi|207343903|gb|EDZ71219.1| YJR006Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 487
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 236/459 (51%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERILKECNKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L + + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNVLPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETVKI 485
>gi|290771209|emb|CBK33737.1| Pol31p [Saccharomyces cerevisiae EC1118]
gi|323347911|gb|EGA82171.1| Pol31p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764809|gb|EHN06329.1| Pol31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 487
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 236/459 (51%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERILKECDKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L + + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNVLPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETVKI 485
>gi|374105608|gb|AEY94519.1| FAAL132Cp [Ashbya gossypii FDAG1]
Length = 415
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 218/428 (50%), Gaps = 44/428 (10%)
Query: 35 QYSQIYFARLHLMRA-LLYSLVPNW--------KPHLPICTVLELEEGRECVIIGTLYKH 85
Q+ Q+Y RL+ R +L + W KP + VL+++ G C +GT+Y
Sbjct: 2 QFYQMYAYRLNESRKRVLANCQRKWDDGFRIQGKPVVQKAKVLDIQAGEPCWCVGTIYCE 61
Query: 86 MKLKPSILDEYSKER-STTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIV 144
MK KP++L+E + T VK + D ++LEDESGRV L G + + +VTG V
Sbjct: 62 MKYKPNVLEEVVNDTYGTKAPVKSYTDPEGTDEIMLEDESGRVLLVGDIITSTPFVTGTV 121
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
V + G E AG F V+D+ PQ PL K V L+SG+ S ++P L
Sbjct: 122 VGVLGMEAEAGTFQVVDICYPQAIPQA--PLVRAPGKSVALISGICAAS--NDPKLSLKL 177
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
GD + G A + ++I G+S+ + + + + + EL
Sbjct: 178 RLLQDLLSGDIGDTGSIASVARLIICGDSV------------GTCESNSIGGALDELGSF 225
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF-----PGSATYNT--FRSCTNPHCFE 317
+ +P+ I+PG NDP+ SLPQQPL++ LF P A N+ F S TNP+ F+
Sbjct: 226 MANTLTSLPITILPGANDPSERSLPQQPLHKALFKQALKPYFAEVNSELFESVTNPYWFD 285
Query: 318 LDNVRFLGTSGQTIDDLQKY-----------SEANDQLEFMERTLRWRHLAPTAPNTLGC 366
L+ ++ L +SGQ +DD+ KY +L+ +E +L+W+++APTAP+TL C
Sbjct: 286 LEGIQVLVSSGQNVDDMCKYVIPYLGTEQLRDTIEHRLDLIEASLKWQNIAPTAPDTLWC 345
Query: 367 YPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
YP+ D DPF++ PHVY GNQ + R + + V L+ +PKFS +G V+++L
Sbjct: 346 YPYKDNDPFIMNEWPHVYIIGNQHAYGYRKVLLENEVEVVLITLPKFSSSGQFVILDLDT 405
Query: 427 LECHTLSF 434
L ++
Sbjct: 406 LNAEVITI 413
>gi|366992752|ref|XP_003676141.1| hypothetical protein NCAS_0D01980 [Naumovozyma castellii CBS 4309]
gi|342302007|emb|CCC69779.1| hypothetical protein NCAS_0D01980 [Naumovozyma castellii CBS 4309]
Length = 473
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/392 (34%), Positives = 209/392 (53%), Gaps = 39/392 (9%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHPD--DHLVLEDE 123
VL+++ + C IGT+Y MK KP+IL+E + P LVK ++M P+ D ++LEDE
Sbjct: 87 VLDIQGNQPCWCIGTIYCEMKYKPNILEEVVNDTYGAPDLVK--SYMDPEGADEIMLEDE 144
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK--ELPLNSGEDK 181
SGRV L G + + ++TG VV + G E AG F VLD+ PQK LP +
Sbjct: 145 SGRVLLVGDFIKSTPFITGTVVGVLGMEADAGTFQVLDICYPAAIPQKPLSLPTDKKNHG 204
Query: 182 YVVLVSGLNVG-SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
+ LVSGLN+ + N L+ QLL + + G L ++ I ++I GNS++
Sbjct: 205 KIALVSGLNIKPTSPENSLRVQLLQEFLMGRLNSNISSDLS-NIGKLIICGNSMDF---- 259
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
N+ S L ++E L + + +MPG DP++ SLPQQPL++ LF
Sbjct: 260 ----NVKSDSPGSLTNSLEEFGKFLGNTLQSISIALMPGAGDPSDRSLPQQPLHKALFKE 315
Query: 301 S-------ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---------------S 338
+ TNP+ F ++ + L +GQ I+D+ KY +
Sbjct: 316 ALRPYFDKMNNEILNLVTNPYQFNINGIELLAIAGQNINDIHKYVISSQDLDSNSEVEKT 375
Query: 339 EANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK 398
+ +L+ ME TL+W+++APTAP+TL YP+ D DPF+++ PHVY GNQ +F TR +
Sbjct: 376 DLEHRLDLMECTLKWQNIAPTAPDTLWAYPYKDFDPFVLDEWPHVYVVGNQPEFGTRDVT 435
Query: 399 GSDRQLVRLVCIPKFSETGVAVVVNLKNLECH 430
+ ++++ IP+FS TG V+++L LE
Sbjct: 436 LNGGTKIKIISIPEFSSTGGIVLLDLNTLETE 467
>gi|83282443|ref|XP_729773.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23488516|gb|EAA21338.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 485
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 150/473 (31%), Positives = 235/473 (49%), Gaps = 70/473 (14%)
Query: 9 RLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNW---------- 58
++++K Y F + TY QQ+S IY R+++MR LL +
Sbjct: 36 KIKKKHYNYENHSNNFILTNPTYT-QQFSSIYSIRINIMRKLLMKTLERLNVEMGDDSKG 94
Query: 59 --KPHLPICTVLELEEGR-------------------------ECVIIGTLYKHMKLKPS 91
K + E+E G +C IGT++K M L+PS
Sbjct: 95 AIKQEIEEAESGEIERGESGQGKKGERGQGKVLQYLKDIKINEKCYCIGTIFKKMDLRPS 154
Query: 92 ILDEYSKE---RSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALH 148
IL EY E T + N+ D L LEDE+ R+KL G + YVTG+ + +
Sbjct: 155 ILKEYISEIEYLDDTVI----NYSQDQDILFLEDETARLKLEG-NINSDHYVTGLTIIIK 209
Query: 149 GKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDH 207
G S G V +V+ + L P+ E+P S +DKY++ VSGL + +N LL +
Sbjct: 210 GVGMSNGSLYVEEVIYSYL-PKLEIPKCISNDDKYILFVSGLYISEQNTNINNISLLRNF 268
Query: 208 ITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQ 267
I G GD + I+ ++ +VI GNS+ G +N I +D L+
Sbjct: 269 ILGLHGD---KFISQNLIRLVIVGNSL----GNINSD----------VNDINVIDTFLSS 311
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTS 327
+ + V +D+MPG DP++ LPQQP F S Y++F+ TNP+ F +DNV S
Sbjct: 312 LCSSVYVDLMPGEKDPSDAILPQQPFPNMFFKKSKKYDSFQCVTNPYMFSIDNVNICCMS 371
Query: 328 GQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES---CPHVY 384
G+ ++++ YS+ +L+ ++ + R L+PT+P+TLGCYP+ D DPF ++ PH++
Sbjct: 372 GEPVNNIISYSKTT-KLDALKMIAKSRILSPTSPDTLGCYPYIDNDPFCIKDDNIYPHIF 430
Query: 385 FAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
GN K E L+ ++++L LVC+P FS T A+ +N+KN+E +SF Q
Sbjct: 431 VNGNCSKLEMEYLE-NEKKLPFLVCLPDFSVTPKALAINIKNMEYKIISFNIQ 482
>gi|1256943|dbj|BAA08859.1| HYS2 [Saccharomyces cerevisiae]
Length = 487
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 236/459 (51%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVHL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L I + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+F+ TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFNSTGMIILLDLETLEAETVKI 485
>gi|344231946|gb|EGV63825.1| hypothetical protein CANTEDRAFT_130212 [Candida tenuis ATCC 10573]
Length = 478
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 212/385 (55%), Gaps = 19/385 (4%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDES 124
+L + + C + GT++ + K +IL++ P ++ D + ++LEDES
Sbjct: 90 ILNITSNKLCWVSGTVFCDLGNKLNILNDVKGGTDDVLPQIPDSYRSQDVGEVVMLEDES 149
Query: 125 GRVKLGGAELLP-SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKY 182
GR L G E + VTG++VA+ G E AG F ++DV+ +APQ+ LP ++ +
Sbjct: 150 GRAVLEGDEFFKENILVTGVIVAVLGIELQAGVFEIIDVIYPSVAPQRSLPTVSDRQGTK 209
Query: 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLN 242
+ VSGL + + L+ +LL ++ G +G+ ++ A+I VVIAG+SI+ N
Sbjct: 210 IAFVSGLEITESVNYDLKLELLKQYLQGEIGESDDKQSVAQISQVVIAGSSIKELEQANN 269
Query: 243 -----GQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
N SK+ SR E +K D ++ + A + IMPG +DP + LPQQ L++
Sbjct: 270 DDYHSSNNYGSKNISRFSAECLKSFDKFVSDLVATCSVAIMPGESDPTDICLPQQSLHKS 329
Query: 297 LFPGSATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----SEANDQLEF--ME 348
F Y ++ TNP E++ VR+LGTSGQ ++D+ KY + Q+ F M
Sbjct: 330 FFLTCKNYVGKNIKALTNPAWLEVEGVRYLGTSGQNVNDILKYLTNEMRQDPQIVFKVMA 389
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFETRLLKGSDRQLVRL 407
TL+W+++APTAP+TL CYPF + DPF L PHVYF GNQ KF + + + V+L
Sbjct: 390 GTLKWQNIAPTAPDTLFCYPFDNCDPFTLSNETPHVYFVGNQSKFIDKCINLQNNISVKL 449
Query: 408 VCIPKFSETGVAVVVNLKNLECHTL 432
+ IPKFS+TG V+++ LE +
Sbjct: 450 LSIPKFSQTGEIVLLDTCTLETQIV 474
>gi|323354326|gb|EGA86166.1| Pol31p [Saccharomyces cerevisiae VL3]
Length = 472
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 143/459 (31%), Positives = 235/459 (51%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R L W + VL+++
Sbjct: 24 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERXLKECBKRWDAGFTLNGQLVLKKDKVLDIQ 82
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 83 GNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 142
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 143 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 202
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 203 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 252
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L + + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 253 IKSVNKDELMISLTEFSKFLHNVLPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESY 312
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 313 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESND 372
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 373 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 432
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 433 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETVKI 470
>gi|241169598|ref|XP_002410434.1| DNA polymerase delta small subunit, putative [Ixodes scapularis]
gi|215494812|gb|EEC04453.1| DNA polymerase delta small subunit, putative [Ixodes scapularis]
Length = 416
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 227/423 (53%), Gaps = 44/423 (10%)
Query: 1 MEIDGE--EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-N 57
M +DG+ E + R Y+ + F + T+ +QY+ Y AR M +L
Sbjct: 5 MAVDGKLTEVQFTRPSCDYLDRSDNFLLNDRTF-NRQYASFYCARYKSMLPVLRQRAEQK 63
Query: 58 W-KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD 116
W K + + ++ +L E + V++GTL+K M+L+PSIL E S+E P + + D
Sbjct: 64 WGKQKVQVTSLGDLVEDKRSVVVGTLFKVMELQPSILKEISEEHHVAPQPRRTHLTDNSD 123
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
LVLED+ R+ L G + +A+VTGI VA+ G+ G F V D+ AGL K++P
Sbjct: 124 SLVLEDDRQRLPLSG-NIDVAAHVTGIPVAVLGRVGDDGRFAVEDICYAGLL--KQVPRP 180
Query: 177 SGE-DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
S E DKY+VLVSG+ + G + LQ QLLVD+++G LG + +Q A+ +V VV+AGN++
Sbjct: 181 SLEADKYLVLVSGVGLVEGADDLLQLQLLVDYLSGFLGCDADQERASRVVRVVLAGNTLR 240
Query: 236 IPRGLLNGQNLASKDQSRLFEPIK-----------ELDILLTQIAAGVPLDIMPGPNDPA 284
Q +++KD +R+ +K E + AAG+ ++
Sbjct: 241 --------QTVSTKDLARVRSELKKKIFARARNFREFEAHTVVQAAGL--------SENE 284
Query: 285 NFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE--------LDNVRFLGTSGQTIDDLQK 336
F L R +R P L+ LGTSGQT+ D+++
Sbjct: 285 CFLFANGLLTRVFARLGCNLLAYRYWLFPSLLGIHAKISGVLNTNLVLGTSGQTVSDVRR 344
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL 396
+S +D L+ +E+TL+WRH+APTAP+TL CYPF D+DPF+V++CPH+YF GNQ + TR
Sbjct: 345 FSNIDDPLDVLEKTLQWRHMAPTAPDTLSCYPFLDKDPFIVDACPHLYFVGNQDSYATRT 404
Query: 397 LKG 399
KG
Sbjct: 405 FKG 407
>gi|444322766|ref|XP_004182024.1| hypothetical protein TBLA_0H02190 [Tetrapisispora blattae CBS 6284]
gi|387515070|emb|CCH62505.1| hypothetical protein TBLA_0H02190 [Tetrapisispora blattae CBS 6284]
Length = 480
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 232/446 (52%), Gaps = 44/446 (9%)
Query: 27 QKETYRGQQYSQIYFARLHLMRALLYSLVPNW---------KPHLPICTVLELEEGRECV 77
+ Y+ Q Y F L + + W K + VL+++ C
Sbjct: 39 KDRNYKSQYYEMYKFRLSKLRERVRKECLSKWNSNGFTLSNKKVVEKKRVLDVQGNEPCW 98
Query: 78 IIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD----DHLVLEDESGRVKLGGAE 133
IGT+Y MK KP++ +E ++ + + + D D ++LEDESGR+ L G
Sbjct: 99 CIGTIYCEMKFKPNVFEEIVSDQYSNTNNIKNIKNYTDPDGSDEIMLEDESGRIILCGEL 158
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL--NSGEDKYVVLVSGLNV 191
+ + ++TG VV L G E AG F VLD+ PQ +P N+ + K ++ +SGLN+
Sbjct: 159 IKNTPFITGTVVGLLGMEAEAGSFQVLDICYPQAIPQLPVPTSNNNIKGKKIMFLSGLNI 218
Query: 192 GSGT-SNPLQFQLLVDHITGHLGDEKEQGI--AAEIVHVVIAGNSIEIPRGLLNGQNLAS 248
+ T SN + QLL ++I G + ++ + + + I ++I GNSIE L N ++
Sbjct: 219 NTTTPSNLFRAQLLQEYILGRINNDNDTILNEISSISKIIICGNSIESNVNLRNKKDNGI 278
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF-----PGSAT 303
D L I+E + +L I +P++I+PG DP++ PQQP N+ LF P
Sbjct: 279 GD---LLSCIQEFNKILINILQSIPIEIIPGEKDPSDKGWPQQPFNKSLFGDELKPYFDV 335
Query: 304 YNT--FRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-----SEANDQ--------LEFME 348
N + TNP+ +L+ L TSG IDD+ KY E ND+ L+ ME
Sbjct: 336 INDELLKCGTNPYSIKLEQYNILITSGTNIDDICKYIVTDDGEDNDEKADTIEHRLDIME 395
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
T+RW+++AP AP+T+ YP+ ++DPF+++ P++Y GNQ++F R + + ++++
Sbjct: 396 STMRWQNIAPNAPDTIISYPYLNKDPFILDEWPNLYVVGNQKEFGVRDMTDPN---IKII 452
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSF 434
+P FS TG V+++L+ L+C+ L F
Sbjct: 453 SVPVFSSTGEVVIMDLETLDCNVLKF 478
>gi|238491652|ref|XP_002377063.1| DNA polymerase delta subunit 2, putative [Aspergillus flavus
NRRL3357]
gi|220697476|gb|EED53817.1| DNA polymerase delta subunit 2, putative [Aspergillus flavus
NRRL3357]
Length = 442
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 215/432 (49%), Gaps = 81/432 (18%)
Query: 86 MKLKPSILDEYSKERS-------TTPLVKPHNF--MHPD-DHLVLEDESGRVKLGGAELL 135
+ LKP+ILD+ +KE S T+P +P HP+ ++LEDESGR++L G L
Sbjct: 3 LPLKPNILDDLTKEASRQCLLPYTSPPPRPTYLDPAHPELTQIMLEDESGRLRLTGNMLR 62
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ--------KELPLNSGEDKYVVLVS 187
TG +VA+ G E S G+F V+DV L Q K+ + VS
Sbjct: 63 SIQLATGAIVAVLGTENSNGDFEVIDVKVPDLPRQPRRWERDEKQSSQKGTGKSKIAFVS 122
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLG------DEKEQGIAAEIVHVVIAGNSIEIPRGLL 241
GL + + + L +LL D++ G+ G DE A+ I +VIAGNS+
Sbjct: 123 GLGITGTSGDTLSLELLTDYLLGYTGSQSPANDESAPPDASAITRLVIAGNSLGASMTTD 182
Query: 242 NGQNLASK-----------DQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
+N AS D S PI + D L +I +P+ +M G +DPANFSLP
Sbjct: 183 PNENAASSKKKSGPKKYGYDASAYNASPITQFDNFLAEILPSIPVTLMAGASDPANFSLP 242
Query: 290 QQPLNRCLFPGSATYNT-------------FRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336
QQ ++R +FP S Y + F S TNP +++ R G+SGQ +DD+ +
Sbjct: 243 QQGIHRAMFPRSRAYCSGPTSAGETPEPGWFDSVTNPWEGDIEGWRLWGSSGQNVDDVLR 302
Query: 337 Y-------------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHV 383
Y +A +++ ME LRWR PTAP+T+ YPF DPF++E+CPH+
Sbjct: 303 YLDFANSSGTVGADGDAEARVKIMEAMLRWRCGVPTAPDTIWSYPFQTHDPFVMEACPHI 362
Query: 384 YFAGNQQKFETRL--------LKGSDRQL-----------VRLVCIPKFSETGVAVVVNL 424
+FAGNQ +F+T + L G+D ++ VRL+ IP F ETG V+V+
Sbjct: 363 FFAGNQPQFKTAVIEGDAPLKLNGTDTEMTGTNDNISGPRVRLLSIPTFKETGELVLVDA 422
Query: 425 KNLECHTLSFGT 436
+ LE + FGT
Sbjct: 423 ETLEVEVVKFGT 434
>gi|399218766|emb|CCF75653.1| unnamed protein product [Babesia microti strain RI]
Length = 443
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 230/457 (50%), Gaps = 63/457 (13%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHL-----PIC 65
QR ++ F + Y Q YS I RL ++ L + P + P
Sbjct: 3 QRLHGRFVDTSGRFLMNSHDYTEQYYSLIT-NRLQSLKPYLVATAKQRWPCIGTVDGPYL 61
Query: 66 TVL--ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
L +++ CVII ++K MK PS LDEY+ + L ++++ DD + LED
Sbjct: 62 ANLLKDVDTVNSCVIIAAIFKEMKNCPSALDEYTGKMYKRDL---NSYISEDDIVYLEDY 118
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAG--LAPQKELPLNSGEDK 181
+ R+ LGG ++ ++V+G+++A+ GK G+F+V D+ G + K LP N+
Sbjct: 119 TSRIVLGGNKINVQSFVSGLIIAVLGK-LEDGKFIVEDLALPGPPINMYKPLP-NNNFQG 176
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLL 241
Y+ ++SGL + + S Q+L D I G G + I +V +VIAGN+
Sbjct: 177 YLAIISGLELSAENSCYNTLQMLRDIILGVCGPTE---IMKNVVRLVIAGNTF------- 226
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
K+ + +K+ D L QIAA + +DIMPG NDP N +LPQQP++ LF S
Sbjct: 227 -------KNYKFDVDLLKKADTFLAQIAASIHIDIMPGLNDPTNLNLPQQPIHPYLFEHS 279
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
+ NTFRS TNP+ FE++ +RFLGTSG+ + ++ S +D LE ++ + R +APTA
Sbjct: 280 SRLNTFRSTTNPYTFEIEGIRFLGTSGENVKMIKMSSNLSD-LESLQLAINSRCIAPTAG 338
Query: 362 NTLGCYPFTDRDPFLV-------ESCPHVYFAGNQQKFETRLLKGSDRQL---------- 404
+TLGCYPF DP + E PHV FAGN K+ T LL SD L
Sbjct: 339 DTLGCYPFKQNDPLNICLPMHKDEEFPHVIFAGNCDKYATGLLCDSDSLLSTRASNEVTN 398
Query: 405 -------------VRLVCIPKFSETGVAVVVNLKNLE 428
VRLVC+PKF + +V + LE
Sbjct: 399 HISKNTFDFKQANVRLVCVPKFVDKPSITLVKIATLE 435
>gi|225680909|gb|EEH19193.1| DNA polymerase subunit delta-2 [Paracoccidioides brasiliensis Pb03]
Length = 738
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 216/458 (47%), Gaps = 97/458 (21%)
Query: 34 QQYSQIYFARLHLMR-ALLYSLVPNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQY+ IYF RL ++ A+ V +W+ + VL++ +G C + GT+Y
Sbjct: 6 QQYADIYFLRLARLKPAVAEIAVASWEGFNIAGEYARRVDRVLDVRQGELCWVAGTVYMD 65
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDH----LVLEDESGRVKLGGAELLPSAYVT 141
+ LKP+ILD+ SKE T ++ P + +LEDESGR++L G L + VT
Sbjct: 66 LPLKPNILDDISKEHWTAAPPSRKTYLDPSNQASAKTMLEDESGRLQLTGTLLQSALLVT 125
Query: 142 GIVVALHGKETSAGEFLVLDVL------------DAGLAPQKELPLN-----------SG 178
G +VA+ G E G+F V+D+ + APQ+ G
Sbjct: 126 GAIVAVLGTENVNGDFEVIDIKVPDLPAQPQRWERSSAAPQESAKRKHDSLEQTRGGTGG 185
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVD--------HITGHLGDEKEQGIAAEIVHVVIA 230
+ K + +VSGL + + + + LL D H+T + +++I ++IA
Sbjct: 186 KRKKIAMVSGLGITGTSGDTVALSLLTDYLLGYNEPHLTAQTNETNSFPFSSQITRLIIA 245
Query: 231 GNSIEIPRGLLNGQNLASKDQSRL--------------------FEPIKELDILLTQIAA 270
GNS+ +L+ Q+ A S + PI D L +I
Sbjct: 246 GNSL--GSSILSTQSEAENGDSTITAAKKRHGPKKYGYDAAAYNASPINHFDTFLAEILP 303
Query: 271 GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT----------------FRSCTNPH 314
+P+ +MPG DPANFSLPQQ ++R +FP S Y + + TNP
Sbjct: 304 SIPITLMPGETDPANFSLPQQEIHRAMFPRSKAYCSAARPGTTGEPTAEPGWLDNVTNPW 363
Query: 315 CFELDNVRFLGTSGQTIDDLQKY------------SEAND----QLEFMERTLRWRHLAP 358
+++ RF G SGQ +DD+ +Y +E+N +L ME LRWR P
Sbjct: 364 EGDVEGWRFWGCSGQNVDDMLRYIDLETEGDGLGGNESNKDGEARLRLMEAMLRWRCAVP 423
Query: 359 TAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL 396
TAP+TL CYP+ DPF ++SCPHV+FAGNQ +F T +
Sbjct: 424 TAPDTLWCYPYQTHDPFTLQSCPHVFFAGNQPRFRTAI 461
>gi|124504825|ref|XP_001351155.1| DNA polymerase epsilon subunit B, putative [Plasmodium falciparum
3D7]
gi|3649756|emb|CAB11105.1| DNA polymerase epsilon subunit B, putative [Plasmodium falciparum
3D7]
Length = 498
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/370 (32%), Positives = 209/370 (56%), Gaps = 26/370 (7%)
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E++ +C IGT++K M+L+PSIL+EY E S L N+ H +D L LEDE+ R+K
Sbjct: 145 EIKVNEKCYCIGTIFKKMELRPSILNEYLSEISI--LNNTINYTHDEDILFLEDETARLK 202
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYVVLVS 187
L G + Y+TG+ V + G S G V +++ + + P+ ++P S +DK+++ VS
Sbjct: 203 LEG-NINSDFYITGLTVIVKGIGMSNGSLYVEEIIYSYI-PKLDIPNCISNDDKFILFVS 260
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL + + LL + I GD ++ ++ ++I GNS L+
Sbjct: 261 GLYINELNKSINNISLLRNFILRLHGD---TYLSENLIRLIILGNS------------LS 305
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
+ D + + +D+ L+ + + + +D+MPG DP++ +LPQQP F + +N+F
Sbjct: 306 NIDNDE--KDMNTIDVFLSSLCSSIHIDLMPGDKDPSDSNLPQQPFPNIFFKKARNFNSF 363
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ F +DN+ SG+ + ++ YS+ N+++ ++ + R L+PT+P+TLGCY
Sbjct: 364 QCVTNPYLFSIDNINICCMSGEPVHNITSYSK-NNKMNALKLIAQSRILSPTSPDTLGCY 422
Query: 368 PFTDRDPFLV---ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNL 424
PFT DPF + + PH++ GN K E + ++ ++QL LVC+P F + A ++NL
Sbjct: 423 PFTKNDPFCLNDDNTYPHIFINGNCSKLEVQYMQDHNKQLPLLVCLPNFHISPKAFLINL 482
Query: 425 KNLECHTLSF 434
KNLE L+F
Sbjct: 483 KNLEYKILTF 492
>gi|342866430|gb|EGU72091.1| hypothetical protein FOXB_17335 [Fusarium oxysporum Fo5176]
Length = 481
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 144/435 (33%), Positives = 221/435 (50%), Gaps = 56/435 (12%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-W-------KPHLPICTVLELEEGRE 75
F + K+ QQY +YF RL ++ + + W + + VL++ +G
Sbjct: 36 FVLDKQRSYQQQYGDMYFLRLTKIKPAVDKVAAEAWTGTKIGEEEAQRVERVLDVRQGEL 95
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
C + GT+Y M LKP+IL++ SK+R + P++ P F DD ++LEDESGR++L G L
Sbjct: 96 CWVTGTVYMEMPLKPNILEDVSKDRWISAPILTPKYFSK-DDQVMLEDESGRIRLVGDVL 154
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ----------KELPLNSGEDK--- 181
VTG ++ + G E + GE V+D+ L PQ E ED+
Sbjct: 155 KTVNLVTGCIIGVMGTENANGELEVIDIKFPDLPPQPDRWSLSKPNSEKAKTKDEDEDMA 214
Query: 182 ----------YVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIA 230
+ +VSGL+ G+ S+ L+ +LL +++ G Q + I +VIA
Sbjct: 215 DASEAKKGNSKIAIVSGLSFSGTDASHALELELLSEYLLGEAMTPLSQIDVSHISRLVIA 274
Query: 231 GNSIEIP--RGLLNGQNLASKDQSRLFE---------PIKELDILLTQIAAGVPLDIMPG 279
GNSI + + L K + + P + D + ++ +P+ ++PG
Sbjct: 275 GNSISTTDRKPPAADEALPEKKAQKKYGYDASAYNPLPSQLFDAFIAELLPSIPITMLPG 334
Query: 280 PNDPANFSLPQQPLNRCLFPGSATY-----------NTFRSCTNPHCFELDNVRFLGTSG 328
DPAN S PQQP++ +FP + Y F + TNP EL+ RFLGT G
Sbjct: 335 AQDPANASYPQQPVHPAMFPSARAYARDPAAPATQPGWFDTVTNPWEAELEGWRFLGTGG 394
Query: 329 QTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
Q +DD+ KY ++D+L ME RWR APTAP+TL YPF D DPF++++CPH+YF GN
Sbjct: 395 QNVDDVFKYVGSDDRLGMMEAMCRWRCCAPTAPDTLWSYPFQDDDPFVMQTCPHLYFVGN 454
Query: 389 QQKFETRLLKGSDRQ 403
Q F T+++ G + Q
Sbjct: 455 QPHFTTKVIHGPEGQ 469
>gi|170583253|ref|XP_001896497.1| pold2-prov protein [Brugia malayi]
gi|158596279|gb|EDP34654.1| pold2-prov protein, putative [Brugia malayi]
Length = 449
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 232/435 (53%), Gaps = 22/435 (5%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQ----QYSQIYFARLHLMRALLYSLVPNWK----PHL 62
+R+ A Y L + I K+ + QY +Y AR+ L+R ++ N K +
Sbjct: 5 RRRPAQYQNLSIKYIIGKKDLEAECFHRQYYHVYRARIKLLRN---RIIDNAKLLLGDDI 61
Query: 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLE 121
C + + ++G E ++IGT+ K +KL+PS+L + ++E+ P V + +D + E
Sbjct: 62 EPCRLTKAKKGDEVLVIGTIAKRVKLRPSVLRDLAEEQLILPQPVAEDKLIGEEDFVEFE 121
Query: 122 DESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
D+ V+L G + + TG VV ++G++ F V+ ++ APQ P+ +D+
Sbjct: 122 DDDQIVRLSG-DFVMDEVATGCVVGIYGRQLDNDIFQVIKIIWPSKAPQPTYPV-LNDDR 179
Query: 182 YVVLVSGLNVG--SGTSNPLQFQLLVDHITGHLG-DEKEQGIAAEIVHVVIAGNSIEIPR 238
Y+ VSG + + LL + G L EKE+ I V +V+AG S+ I
Sbjct: 180 YIAFVSGFSFTGQADAEKIFSLDLLQKWLCGLLPLFEKERDIVERTVRLVVAGESVAITE 239
Query: 239 G----LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
+ L ++ E + +D L++I+ + +D+MPG DP+ + +PQQP++
Sbjct: 240 QGREFTTAARYLIKNEECPNVECVAHMDKFLSKISNLLEVDVMPGLGDPSTYLMPQQPIH 299
Query: 295 RCLFPGSATYNTFRS-CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRW 353
R +F + Y + TNP+ F ++ V LGTSG+ + DL+++++ +E + + L W
Sbjct: 300 RAVFVMGSKYGRMLNLVTNPYEFSVEGVHILGTSGECLSDLKRFTKTLSGVELLSKVLDW 359
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKF 413
+HLAPT P+T+ +PF DRDPF++ES PH+ FA NQ + L++ + L+ +P F
Sbjct: 360 QHLAPTIPDTVDGFPFIDRDPFIIESFPHILFAANQPEASHALVEFEGNRRTLLLSVPSF 419
Query: 414 SETGVAVVVNLKNLE 428
++T V+VNL+NLE
Sbjct: 420 TKTFSMVLVNLRNLE 434
>gi|367014817|ref|XP_003681908.1| hypothetical protein TDEL_0E04540 [Torulaspora delbrueckii]
gi|359749569|emb|CCE92697.1| hypothetical protein TDEL_0E04540 [Torulaspora delbrueckii]
Length = 461
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 226/447 (50%), Gaps = 45/447 (10%)
Query: 21 DEPFEI-QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLEL 70
D FE+ K+ +QY +Y RL +++ L W H + VL++
Sbjct: 25 DNAFELTAKDRSYDKQYFLMYKRRLEILKERTLKECQRRWDDHFTLNGKHVEMRKKVLDI 84
Query: 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESGRVKL 129
+ +IG++Y MK KP+IL+E + P L K + D ++LEDESGRV L
Sbjct: 85 QGNEPVWVIGSVYCEMKYKPNILEEVINDVYGAPDLTKSYTDPEGSDEIMLEDESGRVLL 144
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + +VTG V+ + G E AG F VLD+ PQK L L N + K + V
Sbjct: 145 VGENIRATPFVTGAVIGVLGMEADAGTFQVLDICYPAALPQKSLRLSVPNGSKKKKIAFV 204
Query: 187 SGLNVGSGT-SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGL + + + N L+ QLL +++ G LG E A++I ++I G+S+
Sbjct: 205 SGLGINTTSPGNLLKLQLLQEYLMGRLGPVDE---ASQIGKLIICGDSLSF--------T 253
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
L ++ L+ + +P+ +MPG +DP N SLPQ+P ++ LF S
Sbjct: 254 FDEGSSGELVNCLETFGDFLSNVLQSIPVALMPGASDPTNKSLPQEPFHKALFQKSLKDH 313
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-------SEANDQLE----FM 347
N TNP+ F ++ + L +GQ+I+DL KY S+ D LE M
Sbjct: 314 FEEINRNILDLVTNPYRFHIEGLEILALAGQSINDLCKYVIPAQGSSQDQDTLEHRLDLM 373
Query: 348 ERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRL 407
E T++W+++ PTAP+TL YP++D PF+++ PHVY GNQ + +R L+ ++ VRL
Sbjct: 374 ECTMKWQNIIPTAPDTLWSYPYSDASPFVLDEWPHVYVVGNQPSYGSRDLEMHGKK-VRL 432
Query: 408 VCIPKFSETGVAVVVNLKNLECHTLSF 434
+ +PK+S +G V+ + E ++
Sbjct: 433 ISVPKYSLSGNVVLFDPATFETEIINI 459
>gi|344300780|gb|EGW31101.1| hypothetical protein SPAPADRAFT_63028 [Spathaspora passalidarum
NRRL Y-27907]
Length = 427
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 201/342 (58%), Gaps = 13/342 (3%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDH--LVLEDES 124
+L++ G+ C +IGT+Y K +IL + P ++ ++ ++LEDES
Sbjct: 81 ILDIVSGKLCWVIGTVYIDAPGKLNILKDVENGVDDVLPGVPEAYVSEENTGVVMLEDES 140
Query: 125 GRVKLGGAELL-PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
GR L G+E L + VTG VV + G E AG F ++DV+ APQ + +++ E +
Sbjct: 141 GRAILHGSEFLDKNLLVTGCVVGVLGIEVQAGVFEIMDVVYPASAPQSKRAVDN-EPSKI 199
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-----EIPR 238
VLVSGLN+ L+ +LL ++TG LG ++++ + + + V+IAG+SI E +
Sbjct: 200 VLVSGLNLSP--IGDLKTELLKQYLTGELGSDEDKHVNSNVSQVIIAGDSILPLKQEQNQ 257
Query: 239 GLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
++ N +K+ S+ + +K+L + + +P+ +MPG NDP LPQQPL+R L
Sbjct: 258 DFMSTNNYGTKNISKYNTDSLKKLGEFINDVIVSLPVAVMPGSNDPGEICLPQQPLHRSL 317
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLA 357
+ + TNP +D V+ LGTSGQ +DD++KY++ ++ + M+ +++W++LA
Sbjct: 318 LGNFSYGDRLTRLTNPQWISIDGVKVLGTSGQNVDDIKKYAKRSEVTDIMKASIKWQNLA 377
Query: 358 PTAPNTLGCYPFTDRDPF-LVESCPHVYFAGNQQKFETRLLK 398
PTAP+TL CYP+ + DPF L + PHVYF GNQ+K+ + + +
Sbjct: 378 PTAPDTLYCYPYDNADPFILTDEVPHVYFVGNQEKYASEVFQ 419
>gi|323304341|gb|EGA58114.1| Pol31p [Saccharomyces cerevisiae FostersB]
Length = 487
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 233/459 (50%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-DSQYYHIYQYRLKTFRERILKECDKRWDAGFTLNGQLXLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G +Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGXIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNXLPSISVDIMPGTNDPSDKSLPQQPFHKXLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGENINDICKYVIPSNDNGESENKVEEGESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETVKI 485
>gi|156054518|ref|XP_001593185.1| hypothetical protein SS1G_06107 [Sclerotinia sclerotiorum 1980]
gi|154703887|gb|EDO03626.1| hypothetical protein SS1G_06107 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 475
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 221/458 (48%), Gaps = 71/458 (15%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC--------TVLELEEGRE 75
F + K QQY +YF RL ++ + + I VL++ +G+
Sbjct: 35 FALSKVKNYQQQYGDMYFLRLTTLKKPVEEIASAAWDGFQISGEEVRKVERVLDVRQGQL 94
Query: 76 CVIIGTLYKHMKLKPSILDEYSKER--STTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
C + GT+Y +M LKP+IL++ SK+ S P + + DD ++LEDESGR++L G +
Sbjct: 95 CWVAGTIYMNMPLKPNILEDISKDHWISAPPPRGKYLSGNGDDEIMLEDESGRLRLIGGQ 154
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK--------------ELPLNSGE 179
L VTG +VA+ G E + G+F V+D+ L PQ+ ++ +
Sbjct: 155 LSMELLVTGCIVAVMGTENANGDFEVVDIKVPDLPPQEPRWEMSGVKEEEDIDMDTDKAG 214
Query: 180 DKYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI---- 234
K + L+SGL+ G+ N L+ LL +++ G D Q ++I ++IAGNSI
Sbjct: 215 RKKIALISGLSFSGTSAENSLEKSLLTEYLLGESLDPSSQSDVSKISRLIIAGNSIASDL 274
Query: 235 -EIPRGLLNGQNLASK----DQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSL 288
I + A K D S P D L ++ +P+ ++PG +DPAN SL
Sbjct: 275 DSIAHDTVGNTRKAQKKYGYDASAYNPAPTAHFDNFLAELLPSLPITLLPGASDPANASL 334
Query: 289 PQQPLNRCLFPGSATY--------------NTFRSCTNPHCFELDNVRFLGTSGQTIDDL 334
PQQP++ +FP + Y F TNP E++ R LGT+GQ +DD+
Sbjct: 335 PQQPIHPAMFPQARAYCGSAPSVIGEEREAGWFDIVTNPWEGEIEGWRVLGTAGQNVDDV 394
Query: 335 QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFET 394
KY E D+L ME RWR APTAP+TL C NQ F+T
Sbjct: 395 FKYVEGEDRLSMMEAMCRWRCCAPTAPDTL-C---------------------NQPSFDT 432
Query: 395 RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
++G + Q VRL+ IP F ETG V+++ + LE +
Sbjct: 433 ASIEGPNGQTVRLISIPSFEETGEIVLLDTETLEAEVV 470
>gi|156844124|ref|XP_001645126.1| hypothetical protein Kpol_538p28 [Vanderwaltozyma polyspora DSM
70294]
gi|156115783|gb|EDO17268.1| hypothetical protein Kpol_538p28 [Vanderwaltozyma polyspora DSM
70294]
Length = 474
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 221/445 (49%), Gaps = 50/445 (11%)
Query: 28 KETYRGQQYSQIYFARLHLMRALLYS---------LVPNWKPHLPICTVLELEEGRECVI 78
KE Q+ +Y RL R L N K + VL+++ + C
Sbjct: 40 KERDYSSQFFNLYQTRLKATRERLREECFQKWNNGFKLNGKTVVEKQKVLDIQGNQPCWC 99
Query: 79 IGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHPDDHLVLEDESGRVKLGGAELLPS 137
+GT+Y MK KP+IL+E + P LVK + D ++LEDESGRV L G + +
Sbjct: 100 VGTIYCEMKYKPNILNEVISDVYGAPDLVKSYTDSEGSDEIMLEDESGRVLLVGDFITST 159
Query: 138 AYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG-EDKYVVLVSGLNVGSGTS 196
+VTG +V L G E AG F VLD+ PQ+ LP + + K + LVSG+N+
Sbjct: 160 PFVTGAIVGLLGMEAEAGTFQVLDICYPPALPQRPLPAPATLKGKKIALVSGINISINNP 219
Query: 197 NPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLF 255
PL + QLL +++ G + D ++ +EI ++I G SI+ + + D L
Sbjct: 220 EPLLRLQLLQEYLMGRIVDSEK---ISEIGKLIICGGSID--------SKIENNDSGNLR 268
Query: 256 EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY-------NTFR 308
E I E L + +P+ +MP NDP++ SLPQQP ++ LF S +
Sbjct: 269 ECINEFGKFLGNMLQSLPIALMPSLNDPSDQSLPQQPFHKALFDMSLAHYFNEDNKQILS 328
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKY------SEANDQ-------------LEFMER 349
TNP F+ + V L SG I+D+ KY SE + Q L+ ME
Sbjct: 329 LTTNPSNFDFNGVDALVISGDNINDICKYMIPYQESETDSQENKFDKLDTIEHRLDLMEC 388
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC 409
T++W+++ PT+P+TL YP+ + DPF + PHVY GNQ + + ++ D+ ++++
Sbjct: 389 TMKWQNIVPTSPDTLWSYPYKESDPFNLTQWPHVYIVGNQPLYGAKDVQIKDKT-IKIIS 447
Query: 410 IPKFSETGVAVVVNLKNLECHTLSF 434
+P++SETG V+++L+ +
Sbjct: 448 VPQYSETGSVVILDLETFNTEEIKI 472
>gi|156094127|ref|XP_001613101.1| DNA polymerase delta small subunit [Plasmodium vivax Sal-1]
gi|148801975|gb|EDL43374.1| DNA polymerase delta small subunit, putative [Plasmodium vivax]
Length = 514
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 208/370 (56%), Gaps = 26/370 (7%)
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E++ C IGTL+K M+L+PSIL+EY E + V N+ H +D L LEDE+ R+K
Sbjct: 157 EIKTNENCYCIGTLFKKMELRPSILNEYISEINEAEDVVV-NYSHDEDVLFLEDETARLK 215
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYVVLVS 187
L G + YVTG+ V + G S G V +++ A P+ E+P S +DKY++ VS
Sbjct: 216 LEG-NINSDHYVTGLTVIIKGTGMSNGSLYVEELIYA-YVPKLEVPRCISDDDKYILFVS 273
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL + N LL + I G GD+ ++ +++ VVI GN + +N+
Sbjct: 274 GLYISEQNENGHNTSLLKNFILGLHGDKH---LSEKLIRVVIVGNCL---------RNVE 321
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
S ++ + +D L + V +D+MPG DP++ LPQQP F + +Y++F
Sbjct: 322 SNEKD-----MNTVDTFLASLCPAVYVDLMPGEKDPSDAILPQQPFPNLFFKTARSYSSF 376
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ TNP+ F +D V SG+ ++++ YS+ N L+ ++ + R L+PT+P+TLGCY
Sbjct: 377 QCVTNPYLFSIDGVNVCCMSGEPVNNIVSYSK-NCPLDALKMIAKSRILSPTSPDTLGCY 435
Query: 368 PFTDRDPFLV---ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNL 424
PF ++DPF + + PH++ GN + E + L G ++ L L C+P F T A++VN+
Sbjct: 436 PFIEKDPFCLPDDDKYPHIFVNGNCAQLEVQHLHG-EKTLPLLACLPSFDVTPKALLVNI 494
Query: 425 KNLECHTLSF 434
+N++ TLSF
Sbjct: 495 RNMQHVTLSF 504
>gi|340508551|gb|EGR34233.1| DNA-directed polymerase delta regulatory subunit, putative
[Ichthyophthirius multifiliis]
Length = 385
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 210/392 (53%), Gaps = 62/392 (15%)
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLG------------GAE 133
MKLKPS+ E +++ V +N++ DD + +ED GR++L +
Sbjct: 1 MKLKPSVFSEQNQK------VNNNNYISDDDIIYMEDNLGRMQLSFNNSIYVNPLGQKSP 54
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDV--LDAGLAPQKE--------LPLNSGEDKY- 182
+ VTGIV+ + G + +A E V +V + + L P +E L N +++Y
Sbjct: 55 INKDMLVTGIVMGIKGIQRAA-EVNVFEVQEMYSCLLPYQEKKVSIPYPLSTNFNQNQYD 113
Query: 183 ---------------VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
V+ SG+++ S + ++ + G+ +K I + V
Sbjct: 114 FQYYLQDNLENIGNFVIFTSGIHIDSKV-DKFSLKMFTSILVGNSNLKK---IMQNVNRV 169
Query: 228 VIAGNSIEIPRGLLNGQNLAS----KDQ-----SRLFEPIKELDILLTQIAAGVPLDIMP 278
+IAGN IE +GL NL +DQ S + + +K++D L++Q++ LDIMP
Sbjct: 170 IIAGNVIEKVQGL--DYNLVGSYRCQDQFKNLYSEISQKMKDVDELISQLSYNTSLDIMP 227
Query: 279 GPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS 338
G DP LPQQP+N+C F S + TNP+ FE+D ++FLGTSGQ + D++KYS
Sbjct: 228 GEKDPTPMFLPQQPINKCYFMQSINNKNLQCVTNPYKFEIDGIQFLGTSGQNVSDIKKYS 287
Query: 339 EAND-QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLL 397
ND +++ +E + WRH+ P+AP+TL CYPF D+D F+++ PHVYF+GN KF+T+L+
Sbjct: 288 SLNDNEIDILENNIYWRHMFPSAPDTLQCYPFGDQDNFIIDELPHVYFSGNCSKFDTKLI 347
Query: 398 KGSD-RQLVRLVCIPKFSETGVAVVVNLKNLE 428
+ RL+CIP+ S +++N+ NL+
Sbjct: 348 YDEKVKSSCRLICIPQLSVCKSFILLNISNLD 379
>gi|67526799|ref|XP_661461.1| hypothetical protein AN3857.2 [Aspergillus nidulans FGSC A4]
gi|40739932|gb|EAA59122.1| hypothetical protein AN3857.2 [Aspergillus nidulans FGSC A4]
Length = 606
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/372 (34%), Positives = 196/372 (52%), Gaps = 71/372 (19%)
Query: 119 VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ-------- 170
+LEDESGR++L G++L TG+++A+ G E + G+F +D+ LA Q
Sbjct: 1 MLEDESGRLRLTGSKLQSVQLATGVIIAVLGTENANGDFEAIDIKVPDLARQPRRWERDE 60
Query: 171 KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEK-EQGI---AAEIVH 226
+ P + + K + +VSGL + +S+ L +LL D++ G+ G K E+G A+ I
Sbjct: 61 AKAPKEAKKGK-IAMVSGLGITGTSSDTLALELLTDYLLGYTGSSKGEEGSPPDASRITR 119
Query: 227 VVIAGNSIE------------IPRGLLNGQNLASKDQSRL-FEPIKELDILLTQIAAGVP 273
++IAGNS+ +P + Q D S PI +LD L ++ +P
Sbjct: 120 LIIAGNSLGASTIEAAPATDGVPAKKIAHQKKYGYDASAYNASPITQLDSFLAELLPSIP 179
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATY-------------NTFRSCTNPHCFELDN 320
+ +MPG +DPANF+LPQQP++R +FP S Y F S TNP +++
Sbjct: 180 ITLMPGESDPANFALPQQPIHRAMFPRSRAYCSAPPIGEDKVEPGWFDSVTNPWEGDVEG 239
Query: 321 VRFLGTSGQTIDDLQKYSEANDQ-------------LEFMERTLRWRHLAPTAPNTLGCY 367
RF G+SGQ +DD+ +Y + D+ + ME LRWR PTAP+TL Y
Sbjct: 240 WRFWGSSGQNVDDVLRYLDFADEDGNVDMNGDTEARIRVMEAMLRWRCGVPTAPDTLWSY 299
Query: 368 PFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS--------DRQL-----------VRLV 408
PF DPF++ESCPH++FAGNQ +F+T +++G D ++ VRL+
Sbjct: 300 PFQTHDPFVMESCPHLFFAGNQPQFKTAVIEGDLPLRPDGEDTEMGGTAQNAAVPTVRLI 359
Query: 409 CIPKFSETGVAV 420
+PKF ET ++
Sbjct: 360 SLPKFRETAIST 371
>gi|67608601|ref|XP_666890.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657959|gb|EAL36659.1| hypothetical protein Chro.80190 [Cryptosporidium hominis]
Length = 476
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 241/489 (49%), Gaps = 64/489 (13%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWK 59
M+++ + L+R + E F ++ ++ QY + F+R +R L V WK
Sbjct: 1 MKLEKDVKSLKRPEVDIKNKCERFRVKDYSF-PHQYCHLCFSRFMSLRPFLLKAVQRKWK 59
Query: 60 PHL----------------------PICTVL-ELEEGRECVIIGTLYKHMKLKPSILDEY 96
HL PI L +++ EC+I+G + K MK +P+ILDEY
Sbjct: 60 CHLSVEQEKVEEKIASQGNPEDRLIPILNELKDMKMESECIIMGFVTKEMKNRPTILDEY 119
Query: 97 SKE-RSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSA--YVTGIVVALHGKETS 153
++ TT + N+ DD + +ED S R+ L E + S ++G ++A+ G + S
Sbjct: 120 LQDIEETTKNSQLSNYTSNDDKVYIEDSSSRIPLTLKEEVFSVNNLISGTILAVRGVQNS 179
Query: 154 AGEFLVLDVLDAGLAPQ---KELPL-NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHIT 209
G FLV D+ A + KE L S + Y+ VSGLN+GS N L QL D I
Sbjct: 180 GGNFLVSDLTFASPPEEIIGKEYTLGKSSQPVYLAFVSGLNIGSEIENSLSLQLFRDFIM 239
Query: 210 GHLGDEKEQGI-AAEIVHVVIAGNSIEI------------PRGLLNGQNLASKDQSRLFE 256
G E + +++I +++IAGN I + + ++N + L+S+
Sbjct: 240 GVSSYSSEHRLLSSQIAYLIIAGNIIRLLDTAKETVTGTGTKLVVNNELLSSR------- 292
Query: 257 PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF 316
+ +D ++Q+A+ + L IMPG +DP SLPQ P +F S Y +F S TNP F
Sbjct: 293 -LGVVDSFISQLASTISLAIMPGEDDPVPISLPQPPFQPYIFKNSRNYQSFNSFTNPCLF 351
Query: 317 ELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
++N+R G SGQ I + +S + ++ ++ + R++APT P+ + YPF DRDPF
Sbjct: 352 SINNIRVTGVSGQCISKISLFSSYSKPIDALKFCVESRNIAPTCPDVIPTYPFFDRDPFA 411
Query: 377 V----ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC--IPKFSETGVAVVVNLKNLECH 430
+ ES P V FAGNQ +F + + +C IP+FS V++++ + E
Sbjct: 412 LDYTDESFPQVIFAGNQSEFGSYRFPNNGP-----LCFTIPEFSNNPTLVLLDINSYELK 466
Query: 431 TLSFGTQFS 439
T+SF T S
Sbjct: 467 TISFKTSLS 475
>gi|307212533|gb|EFN88256.1| DNA polymerase delta subunit 2 [Harpegnathos saltator]
Length = 446
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 222/418 (53%), Gaps = 24/418 (5%)
Query: 38 QIYFARLHLMRA-LLYSLVPNW--KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
IY ARL+ +R L W H+ I ++ ++ + ++IG L K LK +
Sbjct: 33 NIYTARLNDLREDTLRKAKLKWVGYSHVEISHLVVEDKEKSYILIGVLCKD-DLKEKLKL 91
Query: 95 EYSKERSTTP---LVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151
++ + P + N+ + LEDE+ RV+L G + +TG+V A+ G E
Sbjct: 92 SLLRDINNEPQQGMQTSQNYTSNYIKIFLEDETSRVRLMGNHMDMQEIITGVVCAVFGHE 151
Query: 152 TSAGEFLVLDVLDAGLAPQKELPLNSG----EDKYVVLVSGLNVGSGTSNPLQFQLLVDH 207
T G F V D G + P S E ++LVSGL++ + T + LL++
Sbjct: 152 TETGAFWVEDWCFPGYCSK---PCTSNGSLTEGGKILLVSGLDLVNNTDDLSL-DLLLEW 207
Query: 208 ITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS---KDQSRLFE---PIKEL 261
+TG G Q A + V+IAGNSI + N + +DQ ++ E +++L
Sbjct: 208 VTGMAGCTNAQKEEAIVTKVIIAGNSIRSSAKIYNYKGYYETKMQDQRKIKEDLMAMQKL 267
Query: 262 DILLTQIAAGVPLDIMPGPNDPANF-SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
D L I + +MPG DP ++ S+PQQP + C SA + + TNP ++
Sbjct: 268 DSFLASILHCCYVVLMPGQFDPTSYYSMPQQPFHPCTLQKSARFKSMHGVTNPWIGDIGG 327
Query: 321 VRFLGTSGQTIDDLQKYSEAND--QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
G+ G+ I D+ K +++++ L++MERTL WRH APT PNTL +PF DPF++
Sbjct: 328 RVVAGSCGEPIADILKVAKSDEVCPLDWMERTLTWRHYAPTGPNTLPVHPFFKNDPFVMT 387
Query: 379 SCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
CP +YFAGN +++RL++G + Q+VRLVC+PKFSET AV+VNL++L +SFG+
Sbjct: 388 ECPDIYFAGNMNTYDSRLVEGDEGQMVRLVCVPKFSETKTAVLVNLQDLTTQPISFGS 445
>gi|154321061|ref|XP_001559846.1| hypothetical protein BC1G_01405 [Botryotinia fuckeliana B05.10]
Length = 447
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 184/357 (51%), Gaps = 53/357 (14%)
Query: 115 DDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP 174
+D ++LEDESGR++L G +L VTG +VA+ G E + G+F V+D+ L PQ+
Sbjct: 100 EDEIMLEDESGRLRLIGGQLSKELLVTGCIVAVMGTENANGDFEVVDIKVPDLPPQEPRW 159
Query: 175 LNSGED--------------KYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQG 219
SGE K + LVSGL+ G+ N L+ LL +++ G D Q
Sbjct: 160 EISGEKEEEDTDMDTGKAGRKKIALVSGLSFSGTSAENSLEKALLTEYLLGESLDPSSQA 219
Query: 220 IAAEIVHVVIAGNSI-----EIPRGLLNGQNLASK----DQSRLF-EPIKELDILLTQIA 269
++I ++IAGNSI I + A K D S P D LT++
Sbjct: 220 DVSKISRLIIAGNSIASDLDSIAHDTVGNTRKAQKKYGYDASAFNPAPTTHFDNFLTELL 279
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY--------------NTFRSCTNPHC 315
+P+ ++PGP+DPAN SLPQQP++ +FP + Y F + TNP
Sbjct: 280 PSLPITLLPGPSDPANASLPQQPIHPAMFPQARAYCGSAPSVIGEEREAGWFDTVTNPWE 339
Query: 316 FELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPF 375
E++ R LGT GQ +DD+ KY E D+L ME + YPF D DPF
Sbjct: 340 GEIEGWRVLGTGGQNVDDVFKYVEGEDRLRMME--------------AMWSYPFQDADPF 385
Query: 376 LVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432
++ +CPH++FAGNQ F+T ++G D Q VRL+ IP F ETG V+++ + LE +
Sbjct: 386 IINTCPHIFFAGNQPSFDTASIEGPDGQTVRLISIPSFEETGEIVLLDAETLEAEVV 442
>gi|449015469|dbj|BAM78871.1| DNA polymerase delta, subunit B [Cyanidioschyzon merolae strain
10D]
Length = 425
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 145/439 (33%), Positives = 222/439 (50%), Gaps = 54/439 (12%)
Query: 16 TYIFLDEPF-------EIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVL 68
TY LD P+ +++ Y QQYSQ+YF RL MR YS + + +
Sbjct: 21 TYANLDGPWGFAMPSGTLEQANYM-QQYSQLYFCRLAEMRNF-YSTYTD----ITRVAIS 74
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKE-RSTTPLVKPHNFMHPDDHLVLEDESGRV 127
+L + ++G ++K M LKPSIL Y+ + T P ++ N+ DD + +EDE+GR+
Sbjct: 75 QLNPVQTQWVVGIIFKQMPLKPSILKSYADDIMLTVPELRLLNYTSGDDRVYVEDETGRI 134
Query: 128 K-LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK-YVVL 185
+ + E VTG+V+AL G + G F V ++ LP + K Y+
Sbjct: 135 ECVFHPEDRKHDVVTGMVIALQGLVGADGLFRVNEIRLPMHPAPIPLPCSGQSAKQYICF 194
Query: 186 VSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
+SG++V + + QL +D++TG LG + Q + V++AGN L G+
Sbjct: 195 LSGVDVRTPAA-----QLFLDYVTGCLGADTVQ--LGACMRVIVAGN--------LRGER 239
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY- 304
LD+ L +A VP+D+MPG DP + + PQQP +R L P SA+
Sbjct: 240 -------------SLLDLFLKTLAEHVPVDLMPGEEDPVHAAFPQQPWHRLLLPQSASQD 286
Query: 305 ---NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
N C+NPH F+++ FLGTSGQ + + ++S ++LE ++R L HLAPT P
Sbjct: 287 DAQNRLVRCSNPHAFQINGCLFLGTSGQNVKNFCRFSRVRNELEALQRLLECGHLAPTCP 346
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFE-TRLLKGSDRQL-----VRLVCIPKFSE 415
+T+ C P D DP ++ PHV F GN F + + G+ R V L+ +P+F
Sbjct: 347 DTMACVPRGDHDPLVIREVPHVLFTGNADTFRYQQRVFGAARNAGTAAPVTLLTVPRFDA 406
Query: 416 TGVAVVVNLKNLECHTLSF 434
TG AV++ L L TL F
Sbjct: 407 TGTAVLLALPELTPTTLQF 425
>gi|66359782|ref|XP_627069.1| DNA polymerase delta2, inactive calcineurin like phosphatase
subunit [Cryptosporidium parvum Iowa II]
gi|46228503|gb|EAK89373.1| DNA polymerase delta2, inactive calcineurin like phosphatase
subunit [Cryptosporidium parvum Iowa II]
Length = 475
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 238/486 (48%), Gaps = 59/486 (12%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWK 59
M+++ + L+R + E F ++ ++ QY + F+R +R L V WK
Sbjct: 1 MKLEKDVKSLKRPEVDIKNECERFRVKDYSF-PHQYCHLCFSRFMSLRPFLLKAVQRKWK 59
Query: 60 PHL---------------------PICTVL-ELEEGRECVIIGTLYKHMKLKPSILDEYS 97
HL PI L +++ EC+I+G + K MK +P+ILDEY
Sbjct: 60 CHLSVEQEKVEKIASQGNPEDRSIPILNELKDMKIESECIIMGFVTKEMKNRPTILDEYL 119
Query: 98 KE-RSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSA--YVTGIVVALHGKETSA 154
++ T + N+ DD + +ED S R+ L E + S ++G ++A+ G + S
Sbjct: 120 QDIEEATKNSQLSNYTSNDDKVYIEDSSSRIPLTLKEDVFSMNNLISGTILAVRGVQNSG 179
Query: 155 GEFLVLDVLDAGLAPQ---KELPL-NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITG 210
G FLV D+ A + KE L S + Y+ VSGLN+GS N L QL D I G
Sbjct: 180 GNFLVSDLTFASPPEEIIGKEYTLGKSSQPVYLAFVSGLNIGSEIENSLSLQLFRDFIMG 239
Query: 211 HLGDEKEQGI-AAEIVHVVIAGNSIEI------------PRGLLNGQNLASKDQSRLFEP 257
E + +++I +++IAGN I + + ++N + L+S+
Sbjct: 240 VSSYSSEHKLLSSQIAYLIIAGNIIRLLDTAKETVTGTGTKLVVNNELLSSR-------- 291
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
+ +D ++Q+A+ + L IMPG +DP SLPQ P +F S Y +F S TNP F
Sbjct: 292 LGVVDSFISQLASTISLAIMPGEDDPVPISLPQPPFQPYIFKNSRNYQSFNSFTNPCLFS 351
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
++NVR G SGQ I + +S + ++ ++ + R++APT P+ + YPF DRDPF +
Sbjct: 352 INNVRVTGVSGQCISKISLFSSYSKPIDALKFCVESRNIAPTCPDVIPTYPFFDRDPFAL 411
Query: 378 ----ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLS 433
ES P V FAGNQ +F + + IP+FS V++++ + E T+S
Sbjct: 412 DYTDESFPQVIFAGNQSEFGSYRFPNNGP---LCFTIPEFSNNPTLVLLDINSYELKTIS 468
Query: 434 FGTQFS 439
F T S
Sbjct: 469 FKTSLS 474
>gi|225709974|gb|ACO10833.1| DNA polymerase subunit delta-2 [Caligus rogercresseyi]
Length = 436
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 222/411 (54%), Gaps = 31/411 (7%)
Query: 35 QYSQIYFARLHLMRALL-YSLVPNWKPHLPICTVLELEEG--RECVIIGTLYKHMKLKPS 91
QY +Y +R ++ L+ S + P PI + EL G ++IGTLYK K KP+
Sbjct: 49 QYYHVYRSRFAALKPLVEASARSSLGPKAPIKRLSELSSGVTDTVLLIGTLYKLQKNKPN 108
Query: 92 ILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151
IL + E + N+ +D L+LEDE R+KL G + VTGI++ ++G++
Sbjct: 109 ILRQLEGEEQPSR----GNYTSSEDELILEDEEQRIKLVGDGINKETLVTGIILGVYGRQ 164
Query: 152 TSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQ----FQLLVDH 207
+ +G+F V + A Q+ + + Y+ +S + + G NP + QL +D
Sbjct: 165 SQSGKFTVEKIFYP--ASQRIMRYTPTKSLYIAFLSNIRISPG--NPSRCLELLQLAIDW 220
Query: 208 ITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQ 267
I+G G K+Q A I ++IAG I+ + Q FE ++ L+ L Q
Sbjct: 221 ISGFEGCPKDQERNASIERLIIAGGLIQ-----------SGVSQEETFESVRLLENALLQ 269
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY-NTFRSCTNPHCFELDNVRFLGT 326
+ + +DI+P +N SLPQQPL++CLFP +A Y +T ++ TNP+ F+L++ GT
Sbjct: 270 LVKSLKVDILP-EESLSNASLPQQPLHKCLFPRAAAYVSTLQTVTNPYYFKLEDTLIHGT 328
Query: 327 SGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
SG + D+ K S +D L+ MER L W H+APT+P+TLGC+P+ DRDP ++E+ PHV F+
Sbjct: 329 SGGNLRDIAKNSSLSDPLDIMERLLLWAHIAPTSPDTLGCFPYKDRDPLIMENRPHVLFS 388
Query: 387 GNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
G + L + L+ +P FS +G V++NLK+L + F +
Sbjct: 389 GGEG---ASALSSRTVEENLLLSLPDFSLSGSMVLLNLKDLSTQEIKFSVE 436
>gi|148708617|gb|EDL40564.1| polymerase (DNA directed), delta 2, regulatory subunit, isoform
CRA_b [Mus musculus]
Length = 192
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 124/175 (70%)
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T + TNP+ +D
Sbjct: 2 LDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDG 61
Query: 321 VRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESC 380
VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF DPF+ C
Sbjct: 62 VRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPEC 121
Query: 381 PHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
PHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L C +SF
Sbjct: 122 PHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPISFA 176
>gi|324511905|gb|ADY44945.1| DNA polymerase delta small subunit [Ascaris suum]
Length = 451
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 130/418 (31%), Positives = 218/418 (52%), Gaps = 23/418 (5%)
Query: 34 QQYSQIYFARLHLMR-ALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSI 92
+Q+ Y AR +MR ++ + + + C + + + +IGT+ K +KL+PS+
Sbjct: 32 RQFFHAYRARASIMRPKIIAAAKEKFGKDIEPCGLTKAVKSGSSFVIGTVEKRIKLRPSV 91
Query: 93 LDEYSKERSTTPLVKP---HNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHG 149
L + ++E+ P KP + +D L EDE+ V L GA + TG V+ L G
Sbjct: 92 LRDLAEEQLILP--KPILEDRLVTDEDFLEFEDENQIVHLTGAIDMDDV-ATGCVIGLRG 148
Query: 150 KETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHIT 209
+ F V +++ +A Q LP DKY++ VSGL+ T + +D +
Sbjct: 149 TQLRDDIFRVDEIIWPKMAIQPPLP-QLATDKYLMFVSGLSFSGETEKDAERLFSLDLLQ 207
Query: 210 GHLGD-----EKEQGIAAEIVHVVIAGNSIEIP---RGLLNGQNLASKDQS-RLFEPIKE 260
+G KE+ + IV +++AG S+ I R K++ E
Sbjct: 208 KWIGGYLPLCNKERSLVENIVRLIVAGESVAITDQGREFTTAARYVIKNEECPNVECAAH 267
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS-CTNPHCFELD 319
+D +++++ + +D+MPG DPA +PQQP++R +FP ++ + + TNP+ F L+
Sbjct: 268 MDKFFSKVSSLLEVDVMPGLGDPATHLMPQQPIHRAVFPNASYHGKMLNLVTNPYYFTLN 327
Query: 320 NVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES 379
+ +GTSG + DL+++S + +ER L W+HLAPT P+T+ +PF DRDPF++E
Sbjct: 328 GIHIMGTSGNNVSDLKRFSTKASSTDILERILLWQHLAPTVPDTVDGFPFIDRDPFIIED 387
Query: 380 C-PHVYFAGNQQKFET--RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
PH+ FA NQ E+ R +G R L LV +P F++T A++VNL+ LE +F
Sbjct: 388 AFPHILFAANQSVAESAVREFEGGRRTL--LVSVPSFAKTKSALLVNLRTLEVIEQNF 443
>gi|149047647|gb|EDM00317.1| polymerase (DNA directed), delta 2, regulatory subunit, isoform
CRA_b [Rattus norvegicus]
Length = 192
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 121/175 (69%)
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y T + TNP+ +D
Sbjct: 2 LDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQLVTNPYQATIDG 61
Query: 321 VRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESC 380
VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF DPF+ C
Sbjct: 62 VRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFAEC 121
Query: 381 PHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
PHVYF GN F +++++G + Q V LV +P FS T A +VNL+ L C +SF
Sbjct: 122 PHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQPISFA 176
>gi|323336923|gb|EGA78180.1| Pol31p [Saccharomyces cerevisiae Vin13]
Length = 376
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 205/383 (53%), Gaps = 47/383 (12%)
Query: 86 MKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKLGGAELLPSAYVTGI 143
MK KP++LDE + P L K + D ++LEDESGRV L G + + ++TG+
Sbjct: 1 MKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDFIRSTPFITGV 60
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLVSGLNVGSGTSNPL- 199
VV + G E AG F VLD+ PQ P + LVSGLN+ + + + L
Sbjct: 61 VVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALVSGLNLNNTSPDRLL 120
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259
+ ++L + + G + ++ + + I ++I GNS++ ++ S ++ L +
Sbjct: 121 RLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------DIKSVNKDELMISLT 170
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS-------ATYNTFRSCTN 312
E L + + +DIMPG NDP++ SLPQQP ++ LF S + TN
Sbjct: 171 EFSKFLHNVLPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESYFNGSNKEILNLVTN 230
Query: 313 PHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND-------QLEFMER 349
P+ F + V L SG+ I+D+ KY E+ND +L+ ME
Sbjct: 231 PYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHRLDLMEC 290
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC 409
T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR+++ + ++++
Sbjct: 291 TMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEIGGKN-IKIIS 349
Query: 410 IPKFSETGVAVVVNLKNLECHTL 432
+P+FS TG+ ++++L+ LE T+
Sbjct: 350 VPEFSSTGMIILLDLETLEAETV 372
>gi|350632136|gb|EHA20504.1| hypothetical protein ASPNIDRAFT_213157 [Aspergillus niger ATCC
1015]
Length = 609
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 189/381 (49%), Gaps = 77/381 (20%)
Query: 119 VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSG 178
+LEDESGR++L G+ L + TG ++A+ G E + G+F V+D L PQ+ P G
Sbjct: 1 MLEDESGRLRLTGSMLRNTQLCTGAIIAVLGTENANGDFEVIDTKVPDL-PQQ--PRRWG 57
Query: 179 EDKY----------VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGI--AAEIVH 226
D + VSGL + +S+ L +LL D++ G+ G E + A+ I
Sbjct: 58 SDTLDAPTGAMKGKIAFVSGLGITGTSSDTLALELLADYLLGYTGGASEGALPDASAITR 117
Query: 227 VVIAGNSIEIPRGLLNGQNLASKDQSRL-------------FEPIKELDILLTQIAAGVP 273
++IAGNS+ + N S + R PI LD L +I +P
Sbjct: 118 LIIAGNSVGA--SMTTDVNADSATKKRTGPKKYGYDASAYNASPITRLDSFLAEILPSMP 175
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATY-------------NTFRSCTNPHCFELDN 320
+ +MPG +DPANFSLPQQ ++R +FP + Y F S TNP +++
Sbjct: 176 VTLMPGESDPANFSLPQQGIHRAMFPQARAYCAPPPAGEDKKEPGWFDSVTNPWEGDVEG 235
Query: 321 VRFLGTSGQTIDDLQKY--------------SEANDQLEFMERTLRWRHLAPTAPNTLGC 366
R G+SGQ +DD+ +Y ++ ++ ME LRWR PTAP+TL
Sbjct: 236 WRLWGSSGQNVDDILRYLNFADEEGNVADGAGDSEARMRVMEAMLRWRCGVPTAPDTLWS 295
Query: 367 YPFTDRDPFLVESCPHVYFAGNQQKFETRL--------LKGSDRQL------------VR 406
YPF DPF++++CPH++FAGNQ +F+T + L G+D ++ VR
Sbjct: 296 YPFQTHDPFVIQTCPHIFFAGNQPQFKTAVIEGDAPLKLNGADTEMTGTDDDNTSGPRVR 355
Query: 407 LVCIPKFSETGVAVVVNLKNL 427
L+ IPKF ETG ++ +
Sbjct: 356 LLSIPKFKETGELTAISTSTV 376
>gi|312093875|ref|XP_003147835.1| pold2-prov protein [Loa loa]
Length = 451
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 137/445 (30%), Positives = 235/445 (52%), Gaps = 24/445 (5%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQ----QYSQIYFARLHLMRALLYSLVPNWKPHL---- 62
+R+ A Y L + + I K + QY +Y AR+ L++ ++ N K L
Sbjct: 5 RRRSAHYQNLSDKYLIGKTDIEAECFHRQYYHMYRARVKLLQK---RIIDNAKQLLGDDI 61
Query: 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLE 121
C + + + + ++IGT+ K +KL+PS+L + ++E+ P V + +D + E
Sbjct: 62 EPCRLTKAGKDSKVLVIGTIAKRVKLRPSVLRDLAEEQLILPQPVAEDKLIGEEDFVEFE 121
Query: 122 DESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
D+ V+L G + + + TG VV ++G + F V +V+ APQ P+ +D+
Sbjct: 122 DDDQIVRLSG-DFVMDEFATGCVVGIYGMQFDNDIFQVNEVIWPSKAPQPTYPI-LNDDR 179
Query: 182 YVVLVSGLN-VGSGTSNP---LQFQLLVDHITGHLG-DEKEQGIAAEIVHVVIAGNSIEI 236
YVV VSG + G + LL + G L KE+ + +V +V+AG S+ I
Sbjct: 180 YVVFVSGFSFTGQADKDAEKIFSLDLLQKWLCGSLPLFGKERDVVERVVRLVVAGESVAI 239
Query: 237 PRG----LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
+ L ++ E + +D L++I++ + +D+MPG DP+ + +PQQP
Sbjct: 240 TEQGREFTTAARYLIKNEECPNVECVAHMDKFLSKISSLLEVDVMPGLGDPSTYLMPQQP 299
Query: 293 LNRCLFP-GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTL 351
++R +F GS TNP+ F L+ V +GTSG+ + DL+++++ + +E + + L
Sbjct: 300 IHRAVFVMGSKHGKMLNLVTNPYQFSLEGVHIVGTSGECLSDLKRFTKRLNGIELLSKIL 359
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIP 411
W+HLAPT P+T+ +PF DRDPF++ES PH+ FA NQ + L++ + L+ IP
Sbjct: 360 DWQHLAPTIPDTVDGFPFMDRDPFIIESFPHILFAANQPEASHALVEFEGNRRTLLLSIP 419
Query: 412 KFSETGVAVVVNLKNLECHTLSFGT 436
F++T V+VNL+NLE SF
Sbjct: 420 SFTKTLSVVLVNLRNLEVVEHSFAV 444
>gi|389583517|dbj|GAB66252.1| DNA polymerase delta small subunit [Plasmodium cynomolgi strain B]
Length = 461
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 127/372 (34%), Positives = 203/372 (54%), Gaps = 38/372 (10%)
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E++ C IGTL+K M+L+PSIL+EY E + V N+ H +D L LEDE+ R+K
Sbjct: 118 EIKTNENCYCIGTLFKKMELRPSILNEYISEINEAEDVVV-NYSHDEDVLFLEDETARLK 176
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP-LNSGEDKYVVLVS 187
L G + YVTG+ V + G S G L +D L P+ E+P + +DKYV+ VS
Sbjct: 177 LEG-NINSDHYVTGLTVIVKGTGMSNGS-LYVDELIYAYVPKLEVPRCITDDDKYVMFVS 234
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247
GL + N LL + I G GD+ ++ +++ +VI GNS+ +N+
Sbjct: 235 GLYISERNENVHNTSLLKNFILGLHGDKH---LSEKLIRIVIVGNSL---------RNVD 282
Query: 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTF 307
S ++ + +D L+ + V +D+MPG DP++ LPQQP F + YN+F
Sbjct: 283 SDEKE-----MNTVDAFLSSLCPAVYVDLMPGEKDPSDAILPQQPFPNLFFKTARNYNSF 337
Query: 308 RSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA--NDQLEFMERTLRWRHLAPTAPNTLG 365
+ TNP+ F +DNV SG+ ++++ YS+ D L+ + ++ +TLG
Sbjct: 338 QCVTNPYLFSIDNVNICCMSGEPVNNIVSYSKNCPMDALKMIAKS-----------HTLG 386
Query: 366 CYPFTDRDPFLV---ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
CYPF ++DPF + + PH++ GN + E + L G ++ L LVC+P F T A++V
Sbjct: 387 CYPFIEKDPFCLQDDDKYPHIFVNGNCAQLEVQHLHG-EKTLPLLVCLPSFDITPKALLV 445
Query: 423 NLKNLECHTLSF 434
N++N++ TL+F
Sbjct: 446 NIRNMQHVTLTF 457
>gi|224003461|ref|XP_002291402.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973178|gb|EED91509.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 558
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 149/510 (29%), Positives = 252/510 (49%), Gaps = 114/510 (22%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLP----------ICTVLELEEGRECVIIGTLY 83
+QYS +Y ARL +R + N + L + ++E++EG +++GT+
Sbjct: 49 RQYSHVYSARLAGLRE---RCLKNAREKLAGGELDGKVEVVDRIIEVKEGAWSILVGTIV 105
Query: 84 KHM--KLKPSILDEYSKERSTTPL-----------------VKPHNF-MHPDDHLVLEDE 123
K K +P + Y+ + + L ++ H F + D L LEDE
Sbjct: 106 KETDPKRRPPVTSTYTDADACSFLFPTDGSANAGVDGVQESLRAHLFDLDKGDILHLEDE 165
Query: 124 SGRVKLG-------------GAELLPSAYVTGIVVALHGKETS-AGEFLVLDVLDAGLAP 169
SGRV+L L P+ TG+VVA+ GK ++ G V V AG P
Sbjct: 166 SGRVELSPETTDKDGMDVDNADALDPNKVATGVVVAVIGKVSAEKGVMHVHSVHFAGPPP 225
Query: 170 QKELPLNSGE------------DKYVVLVSGLNVGS--------GTSNPLQFQLLVDHIT 209
++ + E D ++LVSGL GS G S L+ ++L++++T
Sbjct: 226 AEKKSASGDELRGARVNDNETADPTLLLVSGLGCGSDSPSDVESGGSLALRREMLLEYLT 285
Query: 210 GHLGDEKEQGIAAEIVHVVIAGNSIEIP------------------RGLLNGQNLASKDQ 251
++G+ +G + + V++AG SI P + +N +
Sbjct: 286 NNMGNS--EGNGSSVCRVIVAGGSIAPPVNASSDDETTKENKKSNCNSVAKSKNGKNDSS 343
Query: 252 SRLFEPIKELDILLTQI-AAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY-NTFRS 309
S L ++ELD+ L++I ++GVP+D +PG +DP N + PQ+P++ CL P + +Y + F
Sbjct: 344 SALAFSLRELDLYLSEILSSGVPVDYIPGWHDPTNANWPQRPIHSCLLPNACSYVDLFSR 403
Query: 310 CTNPHCFELD-NVRFLGTSGQTIDDLQKY---SEAND---------QLEFMERTLRWRHL 356
TNP+ + NVR LG+ G + DL++Y E+ND ++ ++ T + H+
Sbjct: 404 STNPYEGVVGGNVRVLGSDGLNVADLRRYLVEGESNDGEEKVVAASSIDTLQTTFQCGHI 463
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL------------ 404
APT P++L +P ++ DPF++++ P+V+FAGN +KFETRL+ ++
Sbjct: 464 APTGPDSLPTFPSSESDPFVLQTRPNVFFAGNCEKFETRLVGADGNEVEGGAKYVDGENG 523
Query: 405 VRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
RL+C+P F+ TG AV++NLK L+C +SF
Sbjct: 524 TRLICVPSFALTGEAVLINLKTLKCDVVSF 553
>gi|403222064|dbj|BAM40196.1| DNA polymerase delta small subunit [Theileria orientalis strain
Shintoku]
Length = 420
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 138/426 (32%), Positives = 220/426 (51%), Gaps = 43/426 (10%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKP---------HLPICTVLELEEG 73
F E+Y+ Q Y + ++L M+ +L + N WK + + +G
Sbjct: 18 FTTHGESYKSQYYVR-SMSKLECMKRILMKTIKNKWKNLKIDDSDPGSYKLVKSINYVKG 76
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHN-FMHPDDHLVLEDESGRVKLGGA 132
+ CVIIGT++KHMK +PS L+EY+++ + + N + +D L LED + R+ L G
Sbjct: 77 K-CVIIGTVFKHMKYQPSPLEEYTQKFNLMVKKEKRNEYTDDEDFLFLEDHTQRLMLIGD 135
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVG 192
L P +V+G+V+A+ G +F+ D + + L +N E+K++ SGL +
Sbjct: 136 CLNPHEFVSGLVIAVRGYMNEQMKFVTEDYTLPEVPDELSLQVND-EEKFIAFTSGLELS 194
Query: 193 SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS 252
N LL + I G + E ++V +V+AGN I G N
Sbjct: 195 GSGINHNSLMLLQNFILG----DSENEFNKKLVRLVVAGNGI----GECNA--------- 237
Query: 253 RLFEPIKELDILLTQIAAGVPLDIMPGPN--DPANFSLPQQPLNRCLFPGSATYNTFRSC 310
E +K DI Q+A+ + +D+MPG + DP N +LPQQ +N L S Y TFRS
Sbjct: 238 ---ESLKNSDIFYAQLASSINVDLMPGNSELDPTNGNLPQQVINPVLMEHSKRYGTFRST 294
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
TNP+ F +D VRFLG SGQ++ ++ K+S + ++E + R R +APT ++L C+ +
Sbjct: 295 TNPYFFSVDGVRFLGVSGQSVANICKFSRLS-EIEALRLVARSRCIAPTGTDSLPCH--S 351
Query: 371 DRDPF-LVESC--PHVYFAGNQQKFET-RLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
+ D F L E PHV+F+GN ++F + G+ +L RLVC+P F V+V+L
Sbjct: 352 ELDVFNLTEDSEYPHVFFSGNCKEFAAGEVENGNGTKLPRLVCVPSFKNDPTLVLVSLST 411
Query: 427 LECHTL 432
L T+
Sbjct: 412 LNVITI 417
>gi|221488496|gb|EEE26710.1| NBP2B protein, putative [Toxoplasma gondii GT1]
Length = 503
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 189/378 (50%), Gaps = 67/378 (17%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPI--CTVLELEEGRECVIIGT 81
F ++ Y+ QQYS +Y++RL + L+ N P L I C + +++ G+ECVI+GT
Sbjct: 123 FVVRTRKYQ-QQYSAVYYSRLAALSGTLFKQAENRWPGLCIHPC-IRDMQTGQECVIVGT 180
Query: 82 LYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL-------GGAE- 133
L+K M LKPS+L EY + P++F+ D L LED++ RV+L AE
Sbjct: 181 LFKDMVLKPSVLKEYLDDIQVQ--ATPNSFLSDSDALFLEDQTARVRLVVDAASSSSAEE 238
Query: 134 ----------------------LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP-- 169
L + VTG+VVA+ G T G FLV D G AP
Sbjct: 239 NGETAEETDALADAGEQPEKQKLRVNGVVTGLVVAVRGVATDNGRFLVRDFCLGG-APAF 297
Query: 170 -------QKELPLNSG--------------EDKYVVLVSGLNVGSGTSNPLQFQLLVDHI 208
+ E P + + K+V VS L +G +P QLL D +
Sbjct: 298 PPLSRPLRPETPARADKPQGRESALANVDLDSKFVAFVSDLRIGDANGDPASLQLLRDFL 357
Query: 209 TGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL-------ASKDQSRLFEPIKEL 261
G G E +A+ +V +VIAGN++ + + + + + L ++E
Sbjct: 358 LGAFGGSFECQLASRVVRLVIAGNALAAVQRPPSASSSASSPSKPGAGANASLKATLQEA 417
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
D+ L+Q+AA VP+D+MPG DP FSLPQQPL+ L P S TY + R+ +NPH F LD +
Sbjct: 418 DVFLSQLAASVPVDLMPGDADPTTFSLPQQPLHGALLPISRTYGSIRAVSNPHAFALDQI 477
Query: 322 RFLGTSGQTIDDLQKYSE 339
RF+G++GQ + ++ +S+
Sbjct: 478 RFIGSAGQPVSNVCAFSD 495
>gi|393911544|gb|EJD76356.1| hypothetical protein LOAG_16701 [Loa loa]
Length = 414
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 209/383 (54%), Gaps = 13/383 (3%)
Query: 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDE 123
C + + + + ++IGT+ K +KL+PS+L + ++E+ P V + +D + ED+
Sbjct: 27 CRLTKAGKDSKVLVIGTIAKRVKLRPSVLRDLAEEQLILPQPVAEDKLIGEEDFVEFEDD 86
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
V+L G + + + TG VV ++G + F V +V+ APQ P+ +D+YV
Sbjct: 87 DQIVRLSG-DFVMDEFATGCVVGIYGMQFDNDIFQVNEVIWPSKAPQPTYPI-LNDDRYV 144
Query: 184 VLVSGLN-VGSGTSNP---LQFQLLVDHITGHLG-DEKEQGIAAEIVHVVIAGNSIEIPR 238
V VSG + G + LL + G L KE+ + +V +V+AG S+ I
Sbjct: 145 VFVSGFSFTGQADKDAEKIFSLDLLQKWLCGSLPLFGKERDVVERVVRLVVAGESVAITE 204
Query: 239 G----LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
+ L ++ E + +D L++I++ + +D+MPG DP+ + +PQQP++
Sbjct: 205 QGREFTTAARYLIKNEECPNVECVAHMDKFLSKISSLLEVDVMPGLGDPSTYLMPQQPIH 264
Query: 295 RCLFP-GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRW 353
R +F GS TNP+ F L+ V +GTSG+ + DL+++++ + +E + + L W
Sbjct: 265 RAVFVMGSKHGKMLNLVTNPYQFSLEGVHIVGTSGECLSDLKRFTKRLNGIELLSKILDW 324
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKF 413
+HLAPT P+T+ +PF DRDPF++ES PH+ FA NQ + L++ + L+ IP F
Sbjct: 325 QHLAPTIPDTVDGFPFMDRDPFIIESFPHILFAANQPEASHALVEFEGNRRTLLLSIPSF 384
Query: 414 SETGVAVVVNLKNLECHTLSFGT 436
++T V+VNL+NLE SF
Sbjct: 385 TKTLSVVLVNLRNLEVVEHSFAV 407
>gi|429327599|gb|AFZ79359.1| DNA polymerase delta small subunit, putative [Babesia equi]
Length = 414
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 223/423 (52%), Gaps = 54/423 (12%)
Query: 34 QQYSQIYFARLHLMRALLYSLV----PNWKPHLPI------CTVLELEEGRECVIIGTLY 83
QY +RL+ ++ ++ V P+ K PI ++ +GR C++IGT+Y
Sbjct: 27 SQYHFRTVSRLNELKPIILKTVIRCWPDIKDESPIRDEYRIAHSVKDAKGR-CIVIGTVY 85
Query: 84 KHMKLKPSILDEYS------KERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPS 137
K MK PS L+ Y KE T F + DD+L LED++ R+ + G + P
Sbjct: 86 KEMKRHPSPLNAYKHDFAFKKEEIT-------EFTNDDDYLTLEDQTQRLIITGDFMDPH 138
Query: 138 AYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSN 197
+ +G+V+A+ G T G F D AG P ++P+ + EDK++ ++SGL V +
Sbjct: 139 RFTSGMVLAMKGYITPEGLFNAEDYTFAGPPPLLQVPVKT-EDKFIAIISGLEVAGPNVD 197
Query: 198 PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEP 257
LL + + G+L D + I+ +V+AGN + S D E
Sbjct: 198 HDGLLLLQEFLLGNLSDTNHK-----IIRLVVAGNGV------------GSCD----LEA 236
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
I + D Q+A+ +P+D+MPG DP N +LPQQ ++ S Y TF+S TNP+ F
Sbjct: 237 ISDSDTFFAQLASSIPVDLMPGAKDPTNANLPQQMISPSFMDHSKRYGTFKSTTNPYLFT 296
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
+D+VRFLG SGQ++ D+ YS + +L+ ++ R +APT ++L C+ ++ D F +
Sbjct: 297 VDDVRFLGISGQSVQDICNYSRLS-ELDALKIIADSRCIAPTGIDSLPCH--SEMDVFNL 353
Query: 378 ---ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+ PHV+F+GN ++F + + +L +++C+P F+++ V+V+L +L+ T+
Sbjct: 354 ADDDEYPHVFFSGNAKEFAAGTI--GENKLPKVICVPSFNDSPTLVLVSLSSLDVTTVKL 411
Query: 435 GTQ 437
++
Sbjct: 412 SSE 414
>gi|449684196|ref|XP_004210569.1| PREDICTED: DNA polymerase delta subunit 2-like [Hydra
magnipapillata]
Length = 177
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 122/169 (72%)
Query: 267 QIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGT 326
Q+ + +P+D+MPG DP N LPQQPL++C+FP S ++T +S TNP+ + +R LGT
Sbjct: 2 QLGSTIPVDVMPGEFDPTNQFLPQQPLHKCMFPKSYGHSTVQSVTNPYQLMIGGLRVLGT 61
Query: 327 SGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
SGQ ID++ +YS +++L+ +E TL H++PT+P+TL CYPF DPF+++ CPH+YF
Sbjct: 62 SGQNIDNIYQYSCFDNRLDILESTLLRGHISPTSPDTLSCYPFYTEDPFIIDHCPHIYFV 121
Query: 387 GNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
GNQ KFETRL++G+D+Q V LVC+P +T V+VNL+NL C L+
Sbjct: 122 GNQPKFETRLIEGNDKQKVLLVCVPPLEKTFTLVMVNLQNLTCFPLTLN 170
>gi|326472656|gb|EGD96665.1| DNA polymerase subunit delta-2 [Trichophyton tonsurans CBS 112818]
gi|326482101|gb|EGE06111.1| DNA polymerase subunit delta-2 [Trichophyton equinum CBS 127.97]
Length = 530
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 141/490 (28%), Positives = 222/490 (45%), Gaps = 109/490 (22%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-PNWKPH-------LPICTVLELEEGRECVIIGTLYKH 85
QQYS IYF RL ++ + + W+ + + VL++ +G+ I+GT+Y
Sbjct: 46 QQYSDIYFLRLTRLKPAVAEVAKAAWEGYNIAGEYARMVDRVLDVRQGKLSWIVGTVYMD 105
Query: 86 MKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGAELLPSAYVT 141
+ LKPSI+D+ SKE T V + P+ ++EDESGR+ L G+ L + VT
Sbjct: 106 LPLKPSIMDDISKENWTAAPVPQKTYNDPNSKKPTQTMVEDESGRLVLTGSLLQSTFLVT 165
Query: 142 GIVVALHGKETSAGEFLVLDVLDAGLAPQ------KELPLN------------------- 176
G+VVA+ G E + G+F V+D+ + PQ ++ P
Sbjct: 166 GVVVAVLGTENADGQFEVVDIKVPDIPPQPARWEREQEPTTDVGVPAKRKHSSLEAGGNG 225
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG-----DEKEQGIAAEIVHVVIAG 231
SG+ K + VSGL + + + + LL D++ G+ G D+ ++I ++IAG
Sbjct: 226 SGKSKKIAFVSGLGITGTSGDTVALSLLADYLLGYTGTIPSTDDYTSTNPSQISRLIIAG 285
Query: 232 NSIEIP-RGLLNGQNLASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPN 281
NS+ N K Q + + PI D L+ I +P+ +MPG
Sbjct: 286 NSLGAKVASTANDAANPEKRQPKKYGYDASAYNASPITLFDSFLSDILPSLPVTLMPGET 345
Query: 282 DPANFSLPQQPLNRCLFPGSATY---------------NTFRSCTNPHCFELDNVRFLGT 326
DPANFSLPQQ ++ + P S Y + TNP +++ RF GT
Sbjct: 346 DPANFSLPQQEIHTAMLPRSKAYCPPIAPKRQALPSEPGWLDNVTNPWEGDIEGWRFWGT 405
Query: 327 SGQTIDDLQKY-------------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
SGQ +DD+ +Y E +L+ ME L+WR PTAP+T+
Sbjct: 406 SGQNVDDVLRYVNFEELEDDEVEDIENGARLKLMEHLLKWRCGVPTAPDTI--------- 456
Query: 374 PFLVESCPHVYFAGNQQKFETRLLKGSDRQL-------VRLVCIPKFSETGVAVVVNLKN 426
NQ +F++ +++G D VRL+ +PKF ETG V+++ +
Sbjct: 457 -------------WNQPRFQSTIIEGGDWGTDDDSITKVRLIALPKFHETGEIVLLDTET 503
Query: 427 LECHTLSFGT 436
L + FGT
Sbjct: 504 LAVEVVKFGT 513
>gi|145480785|ref|XP_001426415.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393490|emb|CAK59017.1| unnamed protein product [Paramecium tetraurelia]
Length = 456
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 142/417 (34%), Positives = 213/417 (51%), Gaps = 39/417 (9%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
QYS IY+ R +L + + N + + ++ ++G IGT++K MKLKP
Sbjct: 51 QYSHIYYMR-YLNLSKRFENNSNDSQFIELIQKIQNQQGT-IKAIGTIFKEMKLKPY--- 105
Query: 95 EYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL---GGAELLP---------SAYVTG 142
Y S L N++ +D LED SGRVKL LP S VTG
Sbjct: 106 -YFSSNSNKTL---QNYVSNEDVCYLEDSSGRVKLQIHNAILCLPNRKDKIVNVSDLVTG 161
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKEL--PLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
I + + G + A + ++ P+ L PLN Y+ L+SGLN + +
Sbjct: 162 ITLMIEG-QIVANNIVKVERFYLPQLPEAPLFKPLNL--TSYLCLISGLNYNASECTT-K 217
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN---SIEIP--RGLLNGQNLASKDQSRLF 255
++ ++D++ G+L + I I V+I GN +E P + + N Q S++
Sbjct: 218 YRHMIDYMQGNLYSGEGSEIPYNISQVIILGNLYSKLEEPIDQQVQNPQQDFKGVYSKIQ 277
Query: 256 EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS-ATYNTFRSCTNPH 314
IK +D L++Q+ + P+ IMPG N+P + PQ PL+R FP S TNP
Sbjct: 278 LNIKGVDELISQLVSVTPVAIMPGVNEPVSQMFPQTPLHRSFFPESLEKSKQLIFLTNPS 337
Query: 315 CFELDNVRFLGTSGQTIDDLQKYSEANDQ--LEFMERTLRWRHLAPTAPNTLGCYPFTDR 372
F L ++ LGTSGQ I D++K S DQ ++ +E TL + H+APTAP+TL YP +
Sbjct: 338 EFSLGELKVLGTSGQNIQDIKKCSLIKDQSDVDLLEMTLFYGHIAPTAPDTLISYPQQKQ 397
Query: 373 DPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF++ P++YFAGN KF T++ + VR+V +P FSETG ++NL LEC
Sbjct: 398 DPFVLSELPNIYFAGNMSKFGTKIAAEN----VRIVSVPAFSETGTICLINLHTLEC 450
>gi|145542454|ref|XP_001456914.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424728|emb|CAK89517.1| unnamed protein product [Paramecium tetraurelia]
Length = 462
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 233/441 (52%), Gaps = 36/441 (8%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFAR-LHLMRALLYSLVPNWKPHLPICTVL 68
L+ KQ+T +L + ++ QY IY AR L+L++ + + P I +
Sbjct: 31 LEIKQSTKFYL-----VPRDKCIKTQYCNIYSARYLNLVKRFQ---IDSEDPQF-IELIQ 81
Query: 69 ELEEGRECV-IIGTLYKHMKLKPSILDE-YSKERSTTPLVKPHNFMHPDDHLVLEDESGR 126
++++ + + IGTL+K MKLKP + +K + +++ +D LED SGR
Sbjct: 82 KIQDQKGTIKAIGTLFKEMKLKPYYFSQNQNKALQGRSYIHIQDYVSNEDVCYLEDGSGR 141
Query: 127 VKL---GGAELLP---------SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP 174
+KL LP S VTGI + + G + A + ++ P+ +
Sbjct: 142 IKLQISNAILCLPNKKEKIVNVSDLVTGITLMIEG-QIVANNIIKVEKFYLPSLPETPML 200
Query: 175 LNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI 234
+ Y+ L+SGLN + S +++ ++D++ G+L + I I V+ GN
Sbjct: 201 KQLNSNSYLCLISGLNYNALESTT-KYRHMIDYLQGNLYSGEGGDIPYNISQVIFTGNLY 259
Query: 235 EIPRGLLNGQNLASKDQ---SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
L+ Q+L + S++ IK +D L++Q+A+ P+ +MPG N+P + LPQ
Sbjct: 260 CKLEETLDQQSLQQDFKGVFSKIQLNIKGVDELISQLASVTPVAVMPGENEPVSQMLPQT 319
Query: 292 PLNRCLFPGS-ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ--LEFME 348
PL+R FP + + +NP F L +++ LGTSGQ I D++K S+ +Q ++ +E
Sbjct: 320 PLHRSHFPETFEKEHQLILLSNPTEFTLGDLKILGTSGQNISDIKKCSQVKNQEDVDLLE 379
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
T+ + ++APTAP+TL +P D+DPF+++ P++YF GN QKF T+++ + VR+V
Sbjct: 380 MTMFYGNIAPTAPDTLISFPQKDQDPFVLQELPNIYFVGNMQKFGTKMVADN----VRIV 435
Query: 409 CIPKFSETGVAVVVNLKNLEC 429
+P FSETG ++NL LEC
Sbjct: 436 SVPAFSETGTICLINLSTLEC 456
>gi|336274849|ref|XP_003352178.1| hypothetical protein SMAC_02613 [Sordaria macrospora k-hell]
gi|380092257|emb|CCC10033.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 492
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 151/450 (33%), Positives = 224/450 (49%), Gaps = 74/450 (16%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMR-ALLYSLVPNWKPHL 62
D EA LQR+ Y L + F+++K QQY+ IYF RL +R A+ + W+ +
Sbjct: 20 DAPEA-LQRQITNYKPL-QTFKLEKTRPYQQQYADIYFLRLTKIRPAVEAAARAAWEGTV 77
Query: 63 -------PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFM-H 113
+ VL++ +G C + GT+Y M LKPSIL++ SK+R + P H + +
Sbjct: 78 LGGEKVKRVERVLDVRQGELCWVAGTVYMDMPLKPSILEDVSKDRWISAPTSIGHYYSGN 137
Query: 114 PDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE- 172
DD ++LED+SGR++L G L VTG +VA+ G E + GEF V+D+L A L PQ E
Sbjct: 138 GDDSIMLEDDSGRIRLVGNALQDHFMVTGCIVAVMGTENTNGEFEVIDLLFAELPPQPER 197
Query: 173 LPLNSGE----------------------DKYVVLVSGLNVGSG-TSNPLQFQLLVDHIT 209
L+ G+ K + +VSGL + TS ++ LL++++
Sbjct: 198 WSLSKGKKEESEDVEMMDASFSGHPSKPPSKKIAIVSGLEFSNADTSYAMELNLLLEYLL 257
Query: 210 GHLGDEKEQGIA-AEIVHVVIAGNSIEI------PRGLLNGQNLASKDQ---------SR 253
G D Q + I ++IAGNSI + L +K Q S
Sbjct: 258 GEALDPSTQRDELSHITRLIIAGNSISTTANETTKAAAYDTSTLKNKFQPQHKKYGYDSS 317
Query: 254 LFEPIKE--LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT----- 306
+ PI D L ++ +P+ ++PG DPAN S PQQP++ +FP S TY +
Sbjct: 318 SYNPIPSQLFDNFLFELLPTMPVTLLPGALDPANASYPQQPIHPAMFPQSRTYMSPPKVG 377
Query: 307 ---------------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTL 351
F + TNP E++ R LGT GQ +DD+ KY E+ D+L ME
Sbjct: 378 VGKDGDVPEAEEPGWFDNVTNPWEGEIEGWRVLGTGGQNLDDVFKYVESEDRLGMMEAMC 437
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCP 381
RWR +APTAP+TL YPF + +PF+ + P
Sbjct: 438 RWRCVAPTAPDTLWSYPFQEDEPFVTKIVP 467
>gi|242023263|ref|XP_002432055.1| DNA polymerase delta small subunit, putative [Pediculus humanus
corporis]
gi|212517413|gb|EEB19317.1| DNA polymerase delta small subunit, putative [Pediculus humanus
corporis]
Length = 328
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 123/179 (68%), Gaps = 1/179 (0%)
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
+K+LD +L+++A V +D+MPG DP+N+ +PQQP +CLFP ++ YN+F+ TNP+
Sbjct: 151 VKQLDEILSELAKTVHVDVMPGGFDPSNYLMPQQPFYKCLFPNASKYNSFQCVTNPYECT 210
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
++ +R LGTSGQ IDD++ S+ N+ ++ +E TL+W HLAP+AP+T CYP+ D DPF++
Sbjct: 211 IEGIRILGTSGQPIDDIKSLSDFNNSIDILENTLKWGHLAPSAPDTQACYPYYDEDPFII 270
Query: 378 ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
PHVYF GNQ K+ T+++ + RL+ +P F +T +++NLK LE L +
Sbjct: 271 TEQPHVYFVGNQDKYSTKVI-NLNGHFTRLISLPTFHDTQTCILLNLKTLESVPLVYNV 328
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC 65
E L+R + Y F K+ ++ +Q++ IY RL +M+ + + W +PI
Sbjct: 21 EIDLKRNEVKYQNHSSRFLCLKKDFK-KQFAHIYAGRLKIMKQRTIQACSAKWGSQIPIR 79
Query: 66 TVLEL--EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
+ EL E +C++IGTL+KH +LKPS+L E S+E TP F+ +D L+LEDE
Sbjct: 80 KLSELADESKEKCIVIGTLFKHQELKPSVLKEISEEHQITPQPVLSKFISENDQLILEDE 139
Query: 124 SGRVKL 129
R+ L
Sbjct: 140 MQRISL 145
>gi|402583229|gb|EJW77173.1| hypothetical protein WUBG_11918 [Wuchereria bancrofti]
Length = 393
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 208/393 (52%), Gaps = 22/393 (5%)
Query: 11 QRKQATYIFLDEPFEIQKETYRGQ----QYSQIYFARLHLMRALLYSLVPNWK----PHL 62
+R+ A Y L + I K+ + QY IY AR+ L++ ++ N K +
Sbjct: 5 RRRPAQYQNLSIKYIIGKKDLEAECFHRQYYHIYRARIKLLKN---RIIDNAKLLLGDGI 61
Query: 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLE 121
C + + ++ E ++IGT+ K +KL+PS+L + ++E+ P V + +D + E
Sbjct: 62 EPCRLTKAKKDDEVLVIGTITKRVKLRPSVLRDLAEEQLILPQPVAEDKLIGEEDFVEFE 121
Query: 122 DESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
D+ V+L G + + TG VV ++G++ F V ++ APQ P+ +D+
Sbjct: 122 DDDQIVRLSG-DFVMDEVATGCVVGIYGRQLDNDIFQVSKMIWPSKAPQPTYPI-LNDDR 179
Query: 182 YVVLVSGLN-VGSGTSNPL-QFQLLVDHITGHLG-DEKEQGIAAEIVHVVIAGNSIEIPR 238
Y+ VSG + G + + LL + G L EKE+ + V +V+AG S+ I
Sbjct: 180 YIAFVSGFSFTGQADAEKIFSLDLLQKWLCGLLPLFEKERDVVERTVRLVVAGESVAITE 239
Query: 239 G----LLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN 294
+ + ++ E + +D L++I+ + +D+MPG DP+ + +PQQP++
Sbjct: 240 QGREFTTAARYIIKNEECPNVECVAHMDKFLSKISNLLEVDVMPGLGDPSTYLMPQQPIH 299
Query: 295 RCLFPGSATYNTFRS-CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRW 353
R +F + Y + TNP+ F ++ V LGTSG+ + DL++Y++ + +E + + L W
Sbjct: 300 RAVFVMGSKYGRMLNLVTNPYEFSVEGVHILGTSGECLSDLKRYTKTLNGVELLSKILDW 359
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFA 386
+HLAPT P+T+ +PF DRDPF++ES PH+ F
Sbjct: 360 QHLAPTIPDTVDGFPFIDRDPFIIESFPHILFC 392
>gi|397571779|gb|EJK47956.1| hypothetical protein THAOC_33287 [Thalassiosira oceanica]
Length = 533
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 150/491 (30%), Positives = 234/491 (47%), Gaps = 99/491 (20%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLP----------ICTVLELEEGRECVIIGTLY 83
+QYS +Y ARL +R V N K L ++E+ EG +I+GT+
Sbjct: 48 RQYSHVYRARLEALR---QRCVDNAKAALREEGVAEDVAVSNQIIEVSEGTLSIIVGTVV 104
Query: 84 KHMKLKPSIL----DEYSKERSTTPLVKPHN----FMHP----------DDHLVLEDESG 125
K M K L D Y + + P + F D L LEDESG
Sbjct: 105 KEMDPKTRRLKVNHDTYGHLGDASTFLFPESDKAGFQQSLKSLAFDSSKGDTLYLEDESG 164
Query: 126 RVKLGGAE-------------LLPSAYVTGIVVALHGKETS-AGEFLVLDVLDAG--LAP 169
RV+L E L P+ TG+VVA+ G+ + G V V AG
Sbjct: 165 RVELAPEEDEDGVSSKASSSPLDPNRIATGVVVAITGEICAEKGVMKVKSVHFAGPPKPA 224
Query: 170 QKELPLNSGEDKYVVLVSGLNVG--------SGTSNPLQFQLLVDHITGHLGDEKEQGIA 221
+ S ++ ++LVSGL G SG + L+ ++L++++T D G
Sbjct: 225 SSAIAKPSADEPVLLLVSGLGCGADAPRDAQSGATLALRREMLLEYVT----DAAFSG-- 278
Query: 222 AEIVHVVIAGNSIEIPR-GLLNGQNLASKDQ---------SRLFEPIKELDILLTQI-AA 270
+ + H+++AG I + + + +N A S L ++ELD+ L+++ A+
Sbjct: 279 SSVSHILVAGGGINVSKTNEFDKENEAKSYGKGKSSSSATSNLAFSLRELDMFLSELLAS 338
Query: 271 GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYN-TFRSCTNPHCFEL------DNVRF 323
G+PLD +PG +DP N + PQ+P++ CL P + Y+ +F TNP+ +L VR
Sbjct: 339 GIPLDYIPGMHDPTNANWPQRPIHSCLLPNACGYSKSFGRPTNPYEGQLTVEGESSGVRV 398
Query: 324 LGTSGQTIDDLQKY---------------SEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
LGT G I DL++Y SE ++ + +TLR+ H+APT P++L +P
Sbjct: 399 LGTDGLNIADLRRYLATRSDESGEGEGDTSEPASCIDALNQTLRYGHIAPTGPSSLPTFP 458
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLL-----KGSDRQLVRLVCIPKFSETGVAVVVN 423
D DPF+++S P +YFAGN FETR++ + + RL+C+P F+ TG V+V
Sbjct: 459 AYDSDPFVLKSRPDIYFAGNCHSFETRMIDDNCNEAKEGGKTRLICVPNFALTGEVVLVK 518
Query: 424 LKNLECHTLSF 434
L +LEC + F
Sbjct: 519 LHSLECEVIEF 529
>gi|294941698|ref|XP_002783195.1| DNA polymerase delta small subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239895610|gb|EER14991.1| DNA polymerase delta small subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 498
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/428 (31%), Positives = 218/428 (50%), Gaps = 50/428 (11%)
Query: 35 QYSQIYFARLHLMR-ALLYSLVPNW-------KPHL--PICTVLELEEGRECVIIGTLYK 84
QY+ YFARL++++ A++ + W HL I V + E G I G + K
Sbjct: 72 QYASTYFARLNMLKNAIVEAAKAKWVASRVIPSDHLLEGIGHVTDRERGVTVAIYGCVVK 131
Query: 85 HMKLKPSILDEYSKERSTT---PLVKPHNFMHPD------DHLVLEDESGRVKL---GGA 132
+KL+PS+L E K + P + + D D + LED S R++L GA
Sbjct: 132 EVKLRPSVLAEIQKTAGISGIHPAMTSEGYSMTDSYTSDEDKIYLEDSSSRIRLVVREGA 191
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKELPLNSGEDKYVVLVSGLNV 191
+ + G+V+A G G F V + V L+P K +P +S + +YV VSGL +
Sbjct: 192 TVDLNRLCQGLVLAFKGTR-GRGCFEVDEMVYPLSLSP-KAIP-SSRDAEYVGFVSGLRL 248
Query: 192 GSGTSNPLQFQLLVDHITGHLGDEKEQGIA-AEIVHVVIAGNSIEIPRGLLNGQNLASKD 250
G + +L + ITG D+ E A + +V ++IAG+++ G+ +L D
Sbjct: 249 GQ---ESVARSMLAEWITGAAVDKAETDAAPSAMVRLIIAGDTLG---GVTTQADLNGVD 302
Query: 251 QSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
+ L ++A VP+ I+PG DPANF+LPQQPL+ LFP S +
Sbjct: 303 K------------FLARVAKSVPVTILPGAQDPANFALPQQPLHSALFPESRKIMDLTAE 350
Query: 311 TNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
TNP F++ + FLG++G + ++ +YS + L+ +E T R R +APTAP+T+ CYPF
Sbjct: 351 TNPARFQVGDCVFLGSTGACVKEVTQYSTTTNVLDALELTARGRVIAPTAPDTIACYPFP 410
Query: 371 DRDPFLV---ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN- 426
DP ++ E HV F+ N K E R++ D + V L+ + F+ V ++VN+ +
Sbjct: 411 SFDPLVITDEEPVGHVMFSANHDKAEFRVVDFGDAK-VTLLSVSAFTSDPVLLLVNINDP 469
Query: 427 LECHTLSF 434
++ +SF
Sbjct: 470 VDVKRVSF 477
>gi|322711483|gb|EFZ03056.1| DNA polymerase delta small subunit [Metarhizium anisopliae ARSEF
23]
Length = 438
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 193/401 (48%), Gaps = 60/401 (14%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHL-------PICTVLELEEGRE 75
F++ K+ QQY +YF RL ++ + + W+ + + VL++ +G
Sbjct: 36 FDLDKQRSYKQQYGDMYFLRLTKIKPAVEEVASAAWEGTMIGGEEVKRVERVLDVRQGEL 95
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPD--DHLVLEDESGRVKLGGA 132
C + GT+Y M LKP+IL++ SK+R + P+ + PD D ++LED+SGR++L G
Sbjct: 96 CWVAGTVYMEMSLKPNILEDVSKDRWISAPIPTQQTYFSPDGSDQIMLEDDSGRIRLVGD 155
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-----PLNS---------- 177
L VTG ++A+ G E S+GEF V+D L Q E P +S
Sbjct: 156 LLQSVPLVTGCIIAVMGTENSSGEFEVIDTKFPDLPDQPERWALSKPSSSTNGHGKRRQI 215
Query: 178 ----GED------------KYVVLVSGLNVGS-GTSNPLQFQLLVDHITGHLGDEKEQGI 220
ED K + +VSGL+ S S+ ++ LL +++ G +Q
Sbjct: 216 IKEEDEDVEMTDASQSTPSKKIAIVSGLSFSSTDASHAVELNLLQEYLLGLALTSSDQEE 275
Query: 221 AAEIVHVVIAGNSIEIP------RGLLNGQNLASKDQSRLFE-PIKELDILLTQIAAGVP 273
A I ++IAGNSI L G D S P + D + +P
Sbjct: 276 VASISRLIIAGNSISTTAERKEEETLKKGHKKYGYDASSYNALPAQLFDEFADALLPSIP 335
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYN----------TFRSCTNPHCFELDNVRF 323
+ ++PG DPAN S PQQP++ +FP + Y F + TNP EL+ R
Sbjct: 336 ITLLPGAQDPANASYPQQPIHMAMFPRARAYGPEPTKPKEPGWFDAVTNPWEGELEGWRV 395
Query: 324 LGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL 364
LGT GQ +DD+ KY +++D+L ME RWR APTAP+TL
Sbjct: 396 LGTGGQNVDDVFKYVDSDDRLGMMEAMCRWRCCAPTAPDTL 436
>gi|237837865|ref|XP_002368230.1| DNA polymerase delta small subunit, putative [Toxoplasma gondii
ME49]
gi|211965894|gb|EEB01090.1| DNA polymerase delta small subunit, putative [Toxoplasma gondii
ME49]
gi|221509002|gb|EEE34571.1| DNA polymerase delta small subunit, putative [Toxoplasma gondii
VEG]
Length = 492
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 176/363 (48%), Gaps = 67/363 (18%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPI--CTVLELEEGRECVIIGT 81
F ++ Y+ QQYS +Y++RL + L+ N P L I C + +++ G+ECVI+GT
Sbjct: 123 FVVRTRKYQ-QQYSAVYYSRLAALSGTLFKQAENRWPGLCIHPC-IRDMQTGQECVIVGT 180
Query: 82 LYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL------------ 129
L+K M LKPS+L EY + P++F+ D L LED++ RV+L
Sbjct: 181 LFKDMVLKPSVLKEYLDDIQVQ--ATPNSFLSDSDALFLEDQTARVRLVVDAASSSSAEE 238
Query: 130 -------------GGAE-----LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP-- 169
G + L + VTG+VVA+ G T G FLV D G AP
Sbjct: 239 NGENAEETDALADAGEQPEKQKLRVNGVVTGLVVAVRGVATDNGRFLVRDFCLGG-APAF 297
Query: 170 -------QKELPLNSG--------------EDKYVVLVSGLNVGSGTSNPLQFQLLVDHI 208
+ E P + + K+V VS L +G +P QLL D +
Sbjct: 298 PPLSRPLRPETPARADKPQGRESALANVDLDSKFVAFVSDLRIGDANGDPASLQLLRDFL 357
Query: 209 TGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL-------ASKDQSRLFEPIKEL 261
G G E +A+ +V +VIAGN++ + + + + + L ++E
Sbjct: 358 LGAFGGSFECQLASRVVRLVIAGNALAAVQRPPSASSSASSPSKPGAGANASLKATLQEA 417
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
D+ L+Q+AA VP+D+MPG DP FSLPQQPL+ L P S TY + R+ +NPH F LD V
Sbjct: 418 DVFLSQLAASVPVDLMPGDADPTTFSLPQQPLHGALLPISRTYGSIRAVSNPHAFALDQV 477
Query: 322 RFL 324
R
Sbjct: 478 RLF 480
>gi|294900658|ref|XP_002777052.1| DNA polymerase delta small subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239884506|gb|EER08868.1| DNA polymerase delta small subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 498
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 216/430 (50%), Gaps = 54/430 (12%)
Query: 35 QYSQIYFARLHLMR-ALLYSLVPNW-------KPHL--PICTVLELEEGRECVIIGTLYK 84
QY+ YFARL++++ A++ + + W HL I V + E G I G + K
Sbjct: 72 QYASTYFARLNMLKNAIVEAAMAKWVATRVIPSDHLLEGIGHVTDRERGVTVAIYGCVVK 131
Query: 85 HMKLKPSILDEYSKERSTT---PLVKPHNFMHPD------DHLVLEDESGRVKL---GGA 132
+KL+PS+L E K + P + + D D + LED S R++L GA
Sbjct: 132 EVKLRPSVLAEIQKTAGISGIHPAMTSEGYSMTDSYASDEDKIYLEDSSSRIRLVVREGA 191
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLVSGL 189
+ + G+V+A G G F V D + P +P +S + +YV VSGL
Sbjct: 192 TVDLNRLCQGLVLAFKGTR-GRGCFEV----DEMVCPLPLIPKGIPSSRDAEYVGFVSGL 246
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIA-AEIVHVVIAGNSIEIPRGLLNGQNLAS 248
+G + + +L + ITG D+ E A + +V ++IAG+++ G+ +L
Sbjct: 247 RLGQES---MARSMLAEWITGAAVDKAETDAAPSAMVRLIIAGDTLG---GVTTQADLNG 300
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
D+ L ++A VP+ I+PG DPANF+LPQQPL+ LFP S
Sbjct: 301 VDK------------FLARVARSVPVTILPGAQDPANFALPQQPLHSALFPESRKIMDLT 348
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
+ TNP F++ + FLG++G + ++ +YS + L+ +E T R R +APTAP+T+ CYP
Sbjct: 349 AETNPARFQVGDCVFLGSTGACVKEVTQYSTTTNVLDALELTARGRVIAPTAPDTIACYP 408
Query: 369 FTDRDPFLV---ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLK 425
F DP ++ E HV F+ N K E R++ + + V L+ + F+ + +VN+
Sbjct: 409 FPSFDPLVITDEEPVGHVMFSANHDKAEFRVVDLGNAK-VTLLSVSAFTSDPILFLVNIN 467
Query: 426 N-LECHTLSF 434
+ ++ +SF
Sbjct: 468 DPVDVKRVSF 477
>gi|256085258|ref|XP_002578839.1| DNA polymerase delta small subunit [Schistosoma mansoni]
gi|353228760|emb|CCD74931.1| putative DNA polymerase delta small subunit [Schistosoma mansoni]
Length = 537
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 152/520 (29%), Positives = 232/520 (44%), Gaps = 111/520 (21%)
Query: 24 FEIQKETYR-GQQYSQIYFARLHLMRALLYSLVPN-WK--------PHLPICTVLELEEG 73
F++ ++ +QY+QIY ARL + +L +L W ++P+ T+ +L
Sbjct: 17 FQVTPNSFSFNRQYTQIYLARLTAAKPVLKTLAEQRWSTSSTKSEVSYIPVRTLADLNGD 76
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKER----------STTPLVKPHNFMHPDDHLVLEDE 123
+C+IIGTL+K M+LKPS+L + + S+T + DD L LEDE
Sbjct: 77 EKCIIIGTLFKEMRLKPSVLHDIAAVEIENIESDIRISSTDTQSLVHLTSDDDVLFLEDE 136
Query: 124 SGRVKLGGAELL-----PSAYVTGIVVALHG--KETSAGEFLVLDVLDAGLAPQKELPL- 175
R+ L + P+ VTG+VVA G E+ G F V D+L L PQ E P+
Sbjct: 137 VQRIALSFCSQISKLWSPANLVTGVVVAALGYEPESQPGSFCVEDML--FLEPQPEKPIY 194
Query: 176 ---------------NSGEDKYVVLVSGLN-VGSGTSNP---LQFQLLVDHI--TGHLGD 214
NSG +V +VS L GSG P + QLL D I G
Sbjct: 195 VQEISHIDVNTTDFRNSG--PWVGVVSALGFAGSGQVKPGHSIALQLLADWIRCAGDFYG 252
Query: 215 EKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL------------- 261
E + ++H++I G+SI+ + ++ + RL + + L
Sbjct: 253 SSESHTDSGLIHLLILGDSIQASKSSIDNDSDKCTPAVRLTQRARYLTRNADAETVTAMA 312
Query: 262 --DILLTQIAAG------------VPLDIMPGPNDPANFSLPQQPLNRCLFP------GS 301
D L + G + +D++PGP+DP + +PQQP++ P G
Sbjct: 313 RFDQWLASLPIGSGCKDNGTDFNGISIDLLPGPSDPTSVLMPQQPIHSAALPCAVSRSGG 372
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
TNP+ F L N L TSGQ +++L +Y++ + + ME TL W HLAPT P
Sbjct: 373 VGSGNLCGRTNPYSFMLRNRSILATSGQGVNELYRYTKLENACDRMETTLLWGHLAPTCP 432
Query: 362 NTLGCYPFTDRDPFLVESC------------PHVYFAGNQQ-----------KFETRLLK 398
+TLG YP + DP L+ S P +Y AG Q K+ + K
Sbjct: 433 DTLGGYPMINVDPLLLRSSSTSSAQNFSPDYPDIYVAGCQSEDQPSWRRARLKWNEEIDK 492
Query: 399 GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
+ L LV +P+F T V++NLK+L+C + F +
Sbjct: 493 NNCGCL--LVSVPRFDLTFSLVLINLKSLDCRVVRFDSSL 530
>gi|340052578|emb|CCC46859.1| putative DNA polymerase delta subunit 2 [Trypanosoma vivax Y486]
Length = 559
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/514 (27%), Positives = 220/514 (42%), Gaps = 120/514 (23%)
Query: 34 QQYSQIYFARLHL-----MRALLYSLVPNWKPHL----PICTVLELEEGRECVIIGTLYK 84
QYS +Y ARL M ALL +V + P C +L+L G+ + +G +YK
Sbjct: 38 HQYSAMYCARLKALKRSAMDALLKKIVASASASTDCIPPTCRLLDLTHGQRALCVGVVYK 97
Query: 85 HMKLKPSILDEYSKE-----------------RSTTPLVKPH------------------ 109
M+L LDEY +E + P V
Sbjct: 98 QMRLMTRFLDEYQRELVRIDAGGDAEDGTDMCEAIPPPVNNEEESAVRNQNDENDNCQPD 157
Query: 110 -NFMHPDDHLVLEDESGRVKLGG--AELLPSAYVTGIVVALHGKETSAGEFLV----LDV 162
N D L +ED SGR+ L G AEL + TG+VVA+ G G V +
Sbjct: 158 GNLCRAGDELFMEDGSGRLLLEGVAAEL----FCTGLVVAVDGTLRDNGRLAVHSYSMID 213
Query: 163 LDAGLAPQKELPLNSGEDKYVVLVSGL--------NVGSGTSNPLQFQLLVDHITGHLGD 214
L P+ + E YV +V G NV + +LLVD+++G +G
Sbjct: 214 LRELYVPRALAGVQCSEPLYVAVVCGFELGNPDVPNVEAAARGRTMVELLVDYLSGCVGS 273
Query: 215 EKEQGIAAEIVHVVIAGNSIEIPRGLL--NGQNLASKDQSRLFEP------------IKE 260
E + A+ I ++I GN+I I L L D +L + +++
Sbjct: 274 EAMKTHASRISRLIIGGNNIAITDELRLKRKVKLDPSDHVKLNDDKPANGTVTSAALMRQ 333
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFEL-- 318
D++L +IA + +D+MPG ND PQQP++ L P ++ +T R TNP+ F L
Sbjct: 334 FDVVLERIAECIEVDLMPGENDMTTAFHPQQPIHPLLLPAASRCSTVRLVTNPYEFSLFP 393
Query: 319 -------------DNVR----FLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
D+ + F +SG ++ L + + + +L+ M LR PTAP
Sbjct: 394 GDDMETPVGKSLDDDTKGETTFFVSSGSALNSLCRETSFSSRLDAMSMILRSGCACPTAP 453
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL--------LKGSDRQL--------- 404
NTL CYPF D DPF+ + PH + +Q ++ETR + S+R
Sbjct: 454 NTLFCYPFVDSDPFVFQRAPHCFVCCDQPRWETRWEPLDAFAPVDDSNRTTLDEECSAAA 513
Query: 405 -------VRLVCIPKFSETGVAVVVNLKNLECHT 431
+RLVC+P FS+TG+ ++++ + + HT
Sbjct: 514 SGVGSDGIRLVCVPPFSQTGILALIDINSPKLHT 547
>gi|322694605|gb|EFY86430.1| DNA polymerase delta subunit 2, putative [Metarhizium acridum CQMa
102]
Length = 485
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 190/401 (47%), Gaps = 60/401 (14%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHL-------PICTVLELEEGRE 75
F++ K+ QQY +YF RL ++ + + W+ + + VL++ +G
Sbjct: 83 FDLDKQRSYKQQYGDMYFLRLTKIKPAVEEVASAAWEGTMIGGEEVKRVERVLDVRQGEL 142
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPD--DHLVLEDESGRVKLGGA 132
C + GT+Y M LKP+IL++ SK+R + P+ + D D ++LED+SGR++L G
Sbjct: 143 CWVAGTVYMEMPLKPNILEDVSKDRWISAPIPTQQTYFSHDGSDQIMLEDDSGRIRLVGD 202
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL------------------- 173
+ VTG ++A+ G E S+GEF V+D L Q E
Sbjct: 203 LVQSVPLVTGCIIAVMGTENSSGEFEVIDTKYPDLPDQPERWALSKPPSSTNGHGKSRQI 262
Query: 174 ------------PLNSGEDKYVVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGDEKEQGI 220
S K + +VSGL+ S + + ++ LL +++ G +Q
Sbjct: 263 VKEEDQDVEMTDASQSTPSKKIAIVSGLSFSSTDACDAVELNLLQEYLLGLALTSSDQEE 322
Query: 221 AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFE-------PIKELDILLTQIAAGVP 273
A I ++IAGNSI + L ++ ++ P + D + +P
Sbjct: 323 VASISRLIIAGNSISTTAERKEEETLKKGNKKYGYDASSYNALPSQLFDEFADTLLPSIP 382
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYN----------TFRSCTNPHCFELDNVRF 323
+ ++PG DPAN S PQQP++ +FP + Y F + TNP EL+ R
Sbjct: 383 ITLLPGAQDPANASYPQQPIHMAMFPRARAYGPEPTKPKEPGWFDAVTNPWEGELEGWRV 442
Query: 324 LGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL 364
LGT GQ +DD+ KY +++D+L ME RWR APTAP+TL
Sbjct: 443 LGTGGQNVDDVFKYVDSDDRLGMMEAMCRWRCCAPTAPDTL 483
>gi|84995054|ref|XP_952249.1| DNA polymerase delta small subunit [Theileria annulata strain
Ankara]
gi|65302410|emb|CAI74517.1| DNA polymerase delta small subunit, putative [Theileria annulata]
Length = 437
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 192/382 (50%), Gaps = 48/382 (12%)
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+CV+IGT++K MK PS LDEY ++ + + + DD+L LED + R+ L G L
Sbjct: 77 KCVVIGTIFKQMKNHPSPLDEYI-QKFDIKVEQRLEYTDDDDYLFLEDHTQRLVLVGNCL 135
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
P +V+G+V+A+ G +F+ D + + L E+K++ L SGL +
Sbjct: 136 NPHKFVSGLVIAVRGYMNDENKFVTEDYILPEVPDTLALYNIKDEEKFIALTSGLELSGK 195
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL 254
N LL + I G E + +V +V+AGN I G +
Sbjct: 196 DLNYKSLLLLQNFILGECNSEYNK----RLVRLVVAGNGI----GRCD------------ 235
Query: 255 FEPIKELDILLTQIAAGVPLDIMPG----PNDPANFSLPQQPLNRCLFPGSATYNTFRSC 310
E ++ DI Q+A+ V +D+MPG P DP N +LPQQ +N L S Y TFRS
Sbjct: 236 IESLERSDIFYAQLASSVNVDLMPGTTDRPMDPTNSNLPQQVINPILMENSKRYGTFRST 295
Query: 311 TNPHCFE----------------LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWR 354
TNP+ F +D VRFLG SGQT++D+ K+S + +L+ ++ R R
Sbjct: 296 TNPYFFSIDGLVIWKGVSSTQFIIDQVRFLGVSGQTVEDMCKFSRLS-ELDALKLIARSR 354
Query: 355 HLAPTAPNTLGCYPFTDRDPF-LVESC--PHVYFAGNQQKFETRLLKGS-DRQLVRLVCI 410
+APT ++L + ++ D F L E PHV+F GN +++E S +L +LVC+
Sbjct: 355 CIAPTGTDSLPIH--SEMDVFNLTEDSEYPHVFFTGNCKEYEVGDFGTSGTTKLPKLVCV 412
Query: 411 PKFSETGVAVVVNLKNLECHTL 432
P F V+++L+ LE L
Sbjct: 413 PSFRREPTLVLISLRTLEVTAL 434
>gi|148708618|gb|EDL40565.1| polymerase (DNA directed), delta 2, regulatory subunit, isoform
CRA_c [Mus musculus]
Length = 367
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 158/280 (56%), Gaps = 7/280 (2%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G F V D A LAPQK +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
Q+ E +K LD +L Q++A VP+D+MPG DP N++LP
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLP 307
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 392 FETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
F +++++G + Q+V LV +P FS T A +VNL++L C +SF
Sbjct: 308 FGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPISFA 351
>gi|149047648|gb|EDM00318.1| polymerase (DNA directed), delta 2, regulatory subunit, isoform
CRA_c [Rattus norvegicus]
Length = 369
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 159/281 (56%), Gaps = 7/281 (2%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+F V D A LAPQ +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQ
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQ 308
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 390 QKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435
Q F +++++G + Q V LV +P FS T A +VNL+ L C +SF
Sbjct: 308 QHFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQPISFA 353
>gi|408397529|gb|EKJ76671.1| hypothetical protein FPSE_03221 [Fusarium pseudograminearum CS3096]
Length = 436
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 195/408 (47%), Gaps = 57/408 (13%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHL-------P 63
R + Y L+ F + K+ QQY +YF RL ++ + + W
Sbjct: 25 RSSSAYRPLNS-FALDKQRSYKQQYGDMYFLRLTKIKPAVDQVAATAWDGTTVGDEEVQR 83
Query: 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE 123
+ VL++ +G C + GT+Y M LKP+IL++ SK+R + + + DD ++LEDE
Sbjct: 84 VDRVLDVRQGELCYVTGTVYMEMPLKPNILEDVSKDRWISAPISTPKYFSDDDQIMLEDE 143
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-----PLNSG 178
SGR++L G L VTG +V + G E S GEF ++D+ L PQ E P++
Sbjct: 144 SGRIRLVGDILKTVQLVTGCIVGVMGTENSNGEFEIIDIKFPDLPPQPERWSLSNPVSDK 203
Query: 179 E------------------DKYVVLVSGLNV-GSGTSNPLQFQLLVDHITGHLGDEKEQG 219
+K + +VSGL+ G+ S L+ LL++++ G Q
Sbjct: 204 SKTKDEDEEMTDASDKKKGNKKIAVVSGLSFSGTDASYALELDLLLEYLLGEALGSSGQI 263
Query: 220 IAAEIVHVVIAGNSIEI----PRGL------LNGQNLASKDQSRLFEPIKE--LDILLTQ 267
+ I ++IAGNSI P GQ D S + P+ D + +
Sbjct: 264 DVSHISRLIIAGNSISTTDRQPAAADEALPEKKGQKKYGYDAS-AYNPLPSQLFDAFVAE 322
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT-----------FRSCTNPHCF 316
+ +P+ ++PG DPAN S PQQP++ +FP + Y F + TNP
Sbjct: 323 LLPSIPVTMLPGARDPANASYPQQPVHPAMFPAARAYTRDPAAPVDQPGWFDTVTNPWEA 382
Query: 317 ELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTL 364
EL+ R LGT GQ +DD+ KY ++D+L ME RWR APTAP+TL
Sbjct: 383 ELEGWRVLGTGGQNVDDVFKYVGSDDRLGMMEAMCRWRCCAPTAPDTL 430
>gi|219122961|ref|XP_002181804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407080|gb|EEC47018.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 470
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 135/413 (32%), Positives = 201/413 (48%), Gaps = 71/413 (17%)
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
H+P +LELEEG + +GT+ K + + + + V P D LVL
Sbjct: 86 HVP--RILELEEGVLSIAVGTIVKEYE------NSVTGNDINSDAVVPGAVNGAKDALVL 137
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL----- 175
EDESGRV L A L Y TG+V+ + G + G V LPL
Sbjct: 138 EDESGRVVLATA--LVHQYPTGVVLGVQGTVGTDGVLQVERFYHPWTCAPPALPLYIDHT 195
Query: 176 -----NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIA 230
N+ + Y++LVSGL+ GS + L +L+ ++ G G + A + V+ A
Sbjct: 196 NNINNNNNDPTYIMLVSGLHCGSPKVSSLPRDMLLSYLQGRFGHK-----ARHVARVIFA 250
Query: 231 GNSIEIPRGLLNGQNLASKDQSRLFEPIKELD-ILLTQIAAGVPLDIMPGPNDPANFSLP 289
G L S D + ++ELD LL A+GVP+D++PG +DP + P
Sbjct: 251 GG-------------LTSTDATA----VQELDGFLLALAASGVPIDVLPGEHDPTTANWP 293
Query: 290 QQPLNRCLFPGSAT-YNTFRSCT-NPHCFELDNVRFLGTSGQTIDDL--QKYSEAND--- 342
Q+ L+R L P + T Y T + T NP+ D+V LGT G+ + DL + +D
Sbjct: 294 QRSLHRALLPHTTTRYGTLVARTPNPYAARHDHVVCLGTDGRNVRDLCTRVGVPVDDHDS 353
Query: 343 --------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE-SCPHVYFAGNQQKFE 393
+L+ +ERTL W H+ PT P+++ P +DP ++E PH+YFAGN +KF
Sbjct: 354 PGAWRPVTELQALERTLAWGHVCPTGPDSVPTVPHALQDPMVIEPHLPHLYFAGNAKKFA 413
Query: 394 TRLLKGS-----------DR-QLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
T+ + + DR RLVC+P+FSETG AV+VNL+ L+ + F
Sbjct: 414 TQRVVAAHADTATAVDTDDRVAFTRLVCVPQFSETGQAVLVNLQTLDVEVVRF 466
>gi|145539045|ref|XP_001455217.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423016|emb|CAK87820.1| unnamed protein product [Paramecium tetraurelia]
Length = 459
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 192/378 (50%), Gaps = 37/378 (9%)
Query: 78 IIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL--- 134
+IGT++K M+LKP +Y++ +K + ++ LED SGR+KL
Sbjct: 93 VIGTIFKIMRLKPYYFQQYTE-------IKIAESVQNEETCYLEDRSGRIKLEFTNCKLN 145
Query: 135 LPSA---------YVTGIVVALHGKETSAGEFLVLDV-LDAGLAPQKELPLNSGEDKYVV 184
LP+ +TGIVV + G+ V + L + P PLN + YV
Sbjct: 146 LPNNTSKTINAEDLITGIVVLIEGEIVGNNIVNVQSINLPDFIDPPIYKPLN--QTAYVC 203
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG---LL 241
L+SG+N +N + + L+ ++ G+L ++ + ++IAGN R L
Sbjct: 204 LMSGINYDV-ENNTTKLRHLIQYLQGNLYCGSGDDVSQRLSQIIIAGNIYGRQRDAKRCL 262
Query: 242 NGQNLASKDQSRLF----EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
G S+D +L+ E IK +D L+ ++A +P+ IMPG N+P + LPQ L +
Sbjct: 263 TGSIKQSQDFKQLYGQLQENIKGIDELVNELAGIIPVAIMPGQNEPVSQILPQTSLQKAH 322
Query: 298 FPGSATYNTFRS-CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ--LEFMERTLRWR 354
F S N+ S TNP F L N+ F+GTSGQ I D++KY DQ ++ +E L +
Sbjct: 323 FGESFENNSQVSFLTNPAEFSLGNILFVGTSGQNIQDIKKYQTIKDQPDIDLIEMNLFYG 382
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS 414
HLAPT +TL DPF++ P+VYF GN + F T+ L + +R++ IP FS
Sbjct: 383 HLAPTLQDTLIQQQQFTNDPFIINQLPNVYFVGNMKSFGTKRLSNN----LRIISIPSFS 438
Query: 415 ETGVAVVVNLKNLECHTL 432
E+G ++NL L+C +
Sbjct: 439 ESGTICLLNLSTLDCFSF 456
>gi|195169613|ref|XP_002025615.1| GL20742 [Drosophila persimilis]
gi|194109108|gb|EDW31151.1| GL20742 [Drosophila persimilis]
Length = 227
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 121/207 (58%), Gaps = 19/207 (9%)
Query: 210 GHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIA 269
G LG+ ++ + +V ++IAGNS+ RG L +LD A
Sbjct: 34 GSLGNGRD---SKSLVRLIIAGNSV---RGSAVAHVLT-----------LQLDSWFASWA 76
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQ 329
+P+D+MPG DP NF LPQQP ++C+FP +A +F++ T +C LD+ +GT+GQ
Sbjct: 77 QCLPIDVMPGAYDPVNFMLPQQPFHKCMFPQAAQLTSFQAVTY-NC-RLDDALIVGTAGQ 134
Query: 330 TIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ 389
+ DL + + LE + TL W H+APT+P+TL CYP+ +RDPF++ CPHV FAGN
Sbjct: 135 NVADLLRITSMESSLEALRCTLTWGHVAPTSPDTLACYPYIERDPFIMRECPHVCFAGNC 194
Query: 390 QKFETRLLKGSDRQLVRLVCIPKFSET 416
+ ET L S+R+ LVC+P F +T
Sbjct: 195 ESLETALHVTSERKRTCLVCVPSFGKT 221
>gi|407406419|gb|EKF30788.1| DNA polymerase delta subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 647
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 152/563 (26%), Positives = 230/563 (40%), Gaps = 145/563 (25%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFAR--------LHLMRALLYSLV 55
+ +EA +R + + F ++++ + QQY+ +Y R L +R + +
Sbjct: 84 ESDEAPRRRAGLSLQRTHQRFLLRRQQFT-QQYAAMYQCREKVLQPRALRAIRRKIDIQL 142
Query: 56 PNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE---------------- 99
P VL+L G+ + +G +YK M+L P LDEY KE
Sbjct: 143 STGSSTPPFARVLDLVPGQRALCVGVIYKQMRLLPRFLDEYQKELIRIDAGEDDDEESGV 202
Query: 100 -----RSTTPLVKPH------------------------------NFMHPDDHLVLEDES 124
+TTPL + H D + +ED S
Sbjct: 203 ADALCDTTTPLTSERLVTMNGDGEDGGRRHAEWQGGRGESREQQVSLCHSADEVFMEDGS 262
Query: 125 GRVKLGGA--ELLPSAYVTGIVVALHGKETSAGEFLV--------LDVLDAGLAPQK--E 172
GRV L ELL TG+V+ + G G V ++ L P K
Sbjct: 263 GRVLLKDVPVELL----CTGLVMGVDGTLRDNGCLFVHNYALTDLREIYVPRLLPGKTPR 318
Query: 173 LPLNSGEDKYVVLVSGLNVGSG-------TSNPLQFQLLVDHITGHLGDEKEQGIAAEIV 225
LP YV +V GL +GS T + +LLVD+++GH+GD+K A+ I
Sbjct: 319 LPC------YVGIVCGLGLGSSQMQEAEVTRSRTMVELLVDYLSGHVGDDKMITQASRIA 372
Query: 226 HVVIAGNSIEIPRGLL--NGQNLASKDQSRLFEP------------IKELDILLTQIAAG 271
H+VIAGNSI L L D +RL + + E D +LT+IA
Sbjct: 373 HLVIAGNSIAPTDELRLKKKVKLDPSDHTRLSDDKQEGGTITSAMLMSEFDAVLTRIAET 432
Query: 272 VPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE-------------- 317
+ +D+MPG D N PQQPL+ L P +A ++ + TNP+ F
Sbjct: 433 IEVDVMPGDQDVTNAFQPQQPLHPLLLPEAARRSSLKLVTNPYEFHAFPGKTPTAAAERT 492
Query: 318 -----------LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGC 366
F +SG ++D+ + + +L+ M LR PTAPNTL
Sbjct: 493 ATTTTTTTTMAEGGTIFFISSGSNLNDVSRETRYRTRLDAMSMLLRCGCACPTAPNTLFS 552
Query: 367 YPFTDRDPFLVESCPHVYFAGNQQKFETRL--LKG---------------SDRQLVRLVC 409
YPF DPF+ + PH + +Q +TR L+G D VRL+C
Sbjct: 553 YPFKISDPFVFPNAPHCFVCCDQPDMQTRWVPLEGFNPAGEETTNEEALVEDSAGVRLIC 612
Query: 410 IPKFSETGVAVVVNLKNLECHTL 432
+P FS+TG V+V++ + + T+
Sbjct: 613 VPPFSQTGALVLVDVNSPQLDTV 635
>gi|71424337|ref|XP_812760.1| DNA polymerase delta subunit 2 [Trypanosoma cruzi strain CL Brener]
gi|70877580|gb|EAN90909.1| DNA polymerase delta subunit 2, putative [Trypanosoma cruzi]
Length = 571
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 147/559 (26%), Positives = 226/559 (40%), Gaps = 137/559 (24%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFAR--------LHLMRALLYSLV 55
+G+E +R + + F ++++ + QQY+ +Y R L +R + +
Sbjct: 8 EGDEVPRRRAGLSLQRTHQRFLLRRQQFT-QQYAAMYQCRERALQPRALRAIRTKIEVHL 66
Query: 56 PNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE---------------- 99
P VL+L G+ + +G +YK M+L P LDEY KE
Sbjct: 67 STGSSAPPFARVLDLVPGQRALCVGVIYKQMRLLPRFLDEYQKELIRIDAGEDDDEESGA 126
Query: 100 -----RSTTPLVKPH------------------------------NFMHPDDHLVLEDES 124
+T PL H D + +ED S
Sbjct: 127 ADALCDTTPPLASEQVATINGDGEIGGGRHAEWQGGRGESREQHVPLCHSADEVFMEDGS 186
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLV--------LDVLDAGLAPQKELPLN 176
GRV L E+ TG+V+ + G G V ++ L P K L
Sbjct: 187 GRVLL--KEVPVDLLCTGLVIGVDGTLRDNGCLFVHSYALTDLREIYVPRLLPCKTRSLP 244
Query: 177 SGEDKYVVLVSGLNVGSG-------TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
YV +V GL +GS T + +LLVD+++GH+GD+ A+ I H+VI
Sbjct: 245 C----YVGIVCGLGLGSPQMQEAEVTRSRTMVELLVDYLSGHVGDDAMITQASRIAHLVI 300
Query: 230 AGNSIEIPRGLL--NGQNLASKDQSRLFEP------------IKELDILLTQIAAGVPLD 275
AGNSI L L D +RL + + E D +LT+I + +D
Sbjct: 301 AGNSIAPTDELRLKKKVKLDPSDHTRLSDEKQEGGAITSAMLMTEFDAVLTRITETIEVD 360
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVR------------- 322
+MPG D N PQQPL+ L P +A ++ + TNP+ F +
Sbjct: 361 VMPGDQDVTNAFQPQQPLHPLLLPEAARRSSLKLVTNPYEFHAFPCKKPTATATAERTAT 420
Query: 323 ------------FLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
F +SG ++D+ + + +L+ M LR PTAPNTL YPF
Sbjct: 421 TTTTTTAEGGTIFFISSGSNLNDVSRETRYRTRLDAMSMLLRCGCACPTAPNTLFSYPFK 480
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRL--LKG---------------SDRQLVRLVCIPKF 413
DPF+ S PH + +Q + +TR L+G D VRL+C+P F
Sbjct: 481 ILDPFVFPSAPHCFVCCDQPEMQTRWVPLEGFNPAGDDTTNEEAPVEDSAGVRLICVPPF 540
Query: 414 SETGVAVVVNLKNLECHTL 432
S+TG V+V++ + + T+
Sbjct: 541 SQTGALVLVDVNSPQLDTV 559
>gi|407846691|gb|EKG02704.1| DNA polymerase delta subunit 2, putative [Trypanosoma cruzi]
Length = 619
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 146/559 (26%), Positives = 226/559 (40%), Gaps = 137/559 (24%)
Query: 4 DGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFAR--------LHLMRALLYSLV 55
+G+E +R + + F ++++ + QQY+ +Y R L +R + +
Sbjct: 56 EGDEVPRRRAGLSLQRTHQRFLLRRQQFT-QQYAAMYQCRERALQPRALRAIRTKIDVHL 114
Query: 56 PNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE---------------- 99
P VL+L G+ + +G +YK M+L P LDEY KE
Sbjct: 115 STGSSAPPFARVLDLVPGQRALCVGVIYKQMRLLPRFLDEYQKELIRIDAGEDDDEESGA 174
Query: 100 -----RSTTPLVKPH------------------------------NFMHPDDHLVLEDES 124
+T PL H D + +ED+S
Sbjct: 175 ADALCDTTPPLASERVATINGDGEIGGGRHAEWQGGRGESREQHVPLCHSADEVFMEDDS 234
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLV--------LDVLDAGLAPQKELPLN 176
GRV L E+ TG+V+ + G G V ++ L P K L
Sbjct: 235 GRVLL--KEVPVDLLCTGLVIGVDGTLRDNGCLFVHSYALTDLREIYVPRLLPGKTRSLP 292
Query: 177 SGEDKYVVLVSGLNVGSG-------TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
YV +V GL +GS T + +LLVD+++GH+GD+ A+ I H+VI
Sbjct: 293 C----YVGIVCGLGLGSPQMQEAEVTRSRTMVELLVDYLSGHVGDDAMITQASRIAHLVI 348
Query: 230 AGNSIEIPRGLL--NGQNLASKDQSRLFEP------------IKELDILLTQIAAGVPLD 275
AGNSI L L D +RL + + E D +LT+I + +D
Sbjct: 349 AGNSIAPTDELRLKKKVKLDPSDHTRLSDEKQEGGAITSAMLMTEFDAVLTRITETIEVD 408
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE------------------ 317
+MPG D N PQQPL+ L P +A ++ + TNP+ F
Sbjct: 409 VMPGDQDVTNAFQPQQPLHPLLLPEAARRSSLKLVTNPYEFHAFPGKKPTATATAERTAT 468
Query: 318 -------LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
F +SG ++D+ + + +L+ M LR PTAPNTL YPF
Sbjct: 469 TTTTTTAEGGTIFFISSGSNLNDVSRETRYRTRLDAMSMLLRCGCACPTAPNTLFSYPFK 528
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRL--LKG---------------SDRQLVRLVCIPKF 413
DPF+ + PH + +Q + +TR L+G D VRL+C+P F
Sbjct: 529 ILDPFVFPNAPHCFVCCDQPEMQTRWVPLEGFNPAGDDTTNEEAPVEDSAGVRLICVPPF 588
Query: 414 SETGVAVVVNLKNLECHTL 432
S+TG V+V++ + + T+
Sbjct: 589 SQTGALVLVDVNSPQLDTV 607
>gi|71650862|ref|XP_814120.1| DNA polymerase delta subunit 2 [Trypanosoma cruzi strain CL Brener]
gi|70879066|gb|EAN92269.1| DNA polymerase delta subunit 2, putative [Trypanosoma cruzi]
Length = 636
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 146/545 (26%), Positives = 215/545 (39%), Gaps = 138/545 (25%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFAR--------LHLMRALLYSLVPNWKPH 61
LQR ++ + F QQY+ +Y R L +R + +
Sbjct: 84 LQRTHQRFLLRQQQFT--------QQYAAMYQCREKALQPRALRAIRTKIDVHLSTGSSA 135
Query: 62 LPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE---------------------R 100
P VL+L G+ + +G +YK M+L P LDEY KE
Sbjct: 136 PPFARVLDLVPGQRALCVGVIYKQMRLLPRFLDEYQKELIRIDAGEDDDEESGAADALCD 195
Query: 101 STTPLVKPH------------------------------NFMHPDDHLVLEDESGRVKLG 130
+T PL H D + +ED SGRV L
Sbjct: 196 TTPPLASERVATISGDGEIGGGRHAEWQGGRGESREQHVPLCHSADEVFMEDGSGRVLL- 254
Query: 131 GAELLPSAYVTGIVVALHGKETSAGEFLV----LDVLDAGLAPQKELPLNSGEDKYVVLV 186
E+ TG+V+ + G +G V L L P+ G YV +V
Sbjct: 255 -KEVPVDLLCTGLVMGVDGTLRDSGCLFVHSYALTDLREIYVPRLLPGKTRGLPCYVGIV 313
Query: 187 SGLNVGSG-------TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
GL +GS T + +LLVD+++GH+GD+ A+ I H+VIAGNSI
Sbjct: 314 CGLGLGSPQMQEAEVTRSRTMVELLVDYLSGHVGDDAMITQASRIAHLVIAGNSIAPTDE 373
Query: 240 LL--NGQNLASKDQSRLFEP------------IKELDILLTQIAAGVPLDIMPGPNDPAN 285
L L D +RL + + E D +LT+I + +D+MPG D N
Sbjct: 374 LRLKKKVKLDPSDHTRLSDEKQEGGAITSAMLMTEFDAVLTRITETIEVDVMPGDQDVTN 433
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE---------------------------L 318
PQQPL+ L P +A ++ + TNP+ F
Sbjct: 434 AFQPQQPLHPLLLPEAARRSSLKLVTNPYEFHAFPGKKPTATATATAERTATTTTTTTAE 493
Query: 319 DNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
F +SG ++D+ + + +L+ M LR PTAPNTL YPF DPF+
Sbjct: 494 GGTIFFISSGSNLNDVSRETRYRTRLDAMSMLLRCGCACPTAPNTLFSYPFKILDPFVFP 553
Query: 379 SCPHVYFAGNQQKFETRL--LKG---------------SDRQLVRLVCIPKFSETGVAVV 421
S PH + +Q + +TR L+G D VRL+C+P FS+TG V+
Sbjct: 554 SAPHCFVCCDQPEMQTRWVPLEGFNPAGDDNTNEEAPVEDSAGVRLICVPPFSQTGALVL 613
Query: 422 VNLKN 426
V++ +
Sbjct: 614 VDVNS 618
>gi|156346192|ref|XP_001621468.1| hypothetical protein NEMVEDRAFT_v1g221960 [Nematostella vectensis]
gi|156207433|gb|EDO29368.1| predicted protein [Nematostella vectensis]
Length = 285
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 88/123 (71%)
Query: 277 MPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336
MPG DP N +LPQQPL+RC+FP + Y T +S TNP+ + +R LGTSGQ + D+ K
Sbjct: 1 MPGEFDPTNHALPQQPLHRCMFPEAIAYPTMQSVTNPYEAVIGGIRVLGTSGQNVSDISK 60
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL 396
+ ++ ++ +E+ + HLAPTAP+TL CYP+ D+DPF++E CPHVYFA NQ +++++
Sbjct: 61 VTTFDNSMDILEQNMVCSHLAPTAPDTLDCYPYADQDPFILEKCPHVYFASNQPSYQSKV 120
Query: 397 LKG 399
L G
Sbjct: 121 LTG 123
>gi|157870692|ref|XP_001683896.1| putative DNA polymerase delta subunit 2 [Leishmania major strain
Friedlin]
gi|68126963|emb|CAJ05268.1| putative DNA polymerase delta subunit 2 [Leishmania major strain
Friedlin]
Length = 592
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 147/542 (27%), Positives = 215/542 (39%), Gaps = 156/542 (28%)
Query: 33 GQQYSQIYFARLHLMRALLYSLVPNWKPHLPICT---VLELEEGRECVIIGTLYKHMKLK 89
G QY+ A L+RA P + P VLEL+ G V +G +YK+MKL
Sbjct: 46 GAQYTSALQAIQRLVRA-----DPMYGPEAGAMKPRRVLELQPGVPAVCVGIVYKNMKLL 100
Query: 90 PSILDEYSKE-----------------RSTTPLVKP------------------------ 108
P LDEY E PL +
Sbjct: 101 PRFLDEYQSELVRIDAGDDDNDEESGVVEAAPLDRSEEAAAAAMHRGNDAEEDVSNDGQT 160
Query: 109 -------HNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLD 161
+N + D L+LED SGRV L G L + TG+V+ ++G S G VL
Sbjct: 161 LAAADEHYNVCNSADELMLEDSSGRVLLQG--LDAERFCTGVVLGVYGTLLSNGSIKVLR 218
Query: 162 VLDAGLAPQKELP---LNSGEDKYVVLVSGLNVG--SGTSNPLQ---------FQLLVDH 207
+G +P + + Y+ VSGLN+ G+S Q +LLV+
Sbjct: 219 YAFSGDLSFMVVPRPLIRAASPCYIAFVSGLNINIPRGSSKEEQAAAARARASLELLVEF 278
Query: 208 ITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS---RLFEP------- 257
+ G+ G+ + A + +VI G+SI P L + D S RL +
Sbjct: 279 LCGNTGNASLRAKAKCVSRLVIGGDSI-APTDELKLKKKVKLDPSDHVRLNDDKAQASTV 337
Query: 258 -----IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTN 312
+++LD LL ++ V +++MPG ND ++ PQQPL+ L P + ++T R +N
Sbjct: 338 TSAALMRQLDTLLERVVRTVEVELMPGANDMSDAFQPQQPLHPLLLPKAGKHSTLRLVSN 397
Query: 313 PHCFE------------------------------LDNVRFLGTSGQTIDDLQKYSEAND 342
P CF D V F TSGQ I+D+ + S
Sbjct: 398 PFCFTAQPPAAASAESEVRGEERVESEAKKHKVEVADGVNFFVTSGQNINDVARESRFPT 457
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR------- 395
+L+ M + PTAPNTL YPF + DPFL + PH A +Q +FETR
Sbjct: 458 RLDTMCMVVVSGCACPTAPNTLFSYPFCNHDPFLFQHTPHCVVACDQPQFETRYATLEEL 517
Query: 396 -------------LLKGSDRQL------------------VRLVCIPKFSETGVAVVVNL 424
L S +L VRL+C+P F+ +G V+V++
Sbjct: 518 HEETHHSFTGPASLSARSKEKLSAASTKDEENKAARAEAGVRLICVPSFARSGALVLVDV 577
Query: 425 KN 426
+
Sbjct: 578 NS 579
>gi|401423419|ref|XP_003876196.1| putative DNA polymerase delta subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492437|emb|CBZ27711.1| putative DNA polymerase delta subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 592
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 148/558 (26%), Positives = 218/558 (39%), Gaps = 160/558 (28%)
Query: 34 QQYSQIYFARLHLMRALLYSLV-------PNWKPHLPICT---VLELEEGRECVIIGTLY 83
QQY+ +Y R+ A + P + P + VLEL+ G V +G +Y
Sbjct: 35 QQYAPMYRCRMGAQYASALHAIQRIVREDPMYGPEAGVMKPWRVLELQPGVPAVCVGIVY 94
Query: 84 KHMKLKPSILDEYSKE-----------------RSTTPLVKP------------------ 108
K+MKL P LDEY E T PL +
Sbjct: 95 KNMKLLPRFLDEYQSELVRIDAGDDDNDEVSGVVETAPLDRSGDAAAAVMHRGNEAEEDV 154
Query: 109 -------------HNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAG 155
++ + D L+LED SGRV L G L + TGIV+ ++G G
Sbjct: 155 SNDGQTLAATDEHYSVCNSADELMLEDSSGRVLLQG--LDAERFCTGIVLGVYGTLLPNG 212
Query: 156 EFLVLDVLDAGLAPQKELP---LNSGEDKYVVLVSGLNV-----------GSGTSNPLQF 201
VL +G +P + + Y+ VSGLN+ +G
Sbjct: 213 CIKVLRYAFSGDLGFTFVPRPLIRTASPCYIAFVSGLNINIPRGSGKEEQAAGARARASL 272
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS---RLFEP- 257
+LL++ + G+ G+ + A + +VI G+SI P L + D S RL +
Sbjct: 273 ELLMEFLCGNTGNASLRAKAKCVSRLVIGGDSI-APTDELKLKKKVKLDPSDHVRLNDDK 331
Query: 258 -----------IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT 306
+++LD LL ++ V +++MPG ND +N PQQPL+ L P + ++T
Sbjct: 332 AQASTVTSAALMRQLDTLLERVVRTVEVELMPGANDMSNAFQPQQPLHPLLLPKAGKHST 391
Query: 307 FRSCTNPHCFE------------------------------LDNVRFLGTSGQTIDDLQK 336
R +NP CF D V F TSGQ I+D+ +
Sbjct: 392 LRLVSNPFCFTAQPPAAVTAEVEVRSEECVESEAKKHKAEVADGVNFFVTSGQNINDVAR 451
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR- 395
S +L+ M + PTAPNTL YPF ++DPFL PH A +Q +FETR
Sbjct: 452 ESRFPTRLDTMCMVVVSGCACPTAPNTLFSYPFCNQDPFLFHHTPHCVVACDQPQFETRY 511
Query: 396 -----LLKGSDRQL--------------------------------VRLVCIPKFSETG- 417
L + + R VRL+C+P F+ +G
Sbjct: 512 ATLEELHEETHRSFTAPASLSVRSKEKPSAAFAKDEENKAVRAEAGVRLICVPSFARSGA 571
Query: 418 -VAVVVNLKNLECHTLSF 434
V V VN LE ++F
Sbjct: 572 LVLVDVNSSTLETSVVTF 589
>gi|164663043|ref|XP_001732643.1| hypothetical protein MGL_0418 [Malassezia globosa CBS 7966]
gi|159106546|gb|EDP45429.1| hypothetical protein MGL_0418 [Malassezia globosa CBS 7966]
Length = 192
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 276 IMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQ 335
+MPG +DP +LPQQPL R L P ++ + TNP F L+ L TSGQ +DDL
Sbjct: 25 VMPGMHDPCTLTLPQQPLLRTLLPRASQRTSLHLSTNPTWFSLNGRAILATSGQNLDDLL 84
Query: 336 KY------SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ 389
KY +++ L+ TLRW H+APTAP+TL CYPF D F++ + P VY GNQ
Sbjct: 85 KYMPDDAKRDSSAALDMAVATLRWSHMAPTAPDTLWCYPFKAADAFVIRATPDVYVIGNQ 144
Query: 390 QKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
F T + S VR++ +P F+ T VV++ + LE H +SF T
Sbjct: 145 AAFATTTFQASPTHQVRVILVPTFASTHQVVVLDTETLEPHIMSFHT 191
>gi|72386565|ref|XP_843707.1| DNA polymerase delta subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62175746|gb|AAX69874.1| DNA polymerase delta subunit 2, putative [Trypanosoma brucei]
gi|70800239|gb|AAZ10148.1| DNA polymerase delta subunit 2, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 566
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 146/526 (27%), Positives = 221/526 (42%), Gaps = 126/526 (23%)
Query: 34 QQYSQIYFARLH-LMRALLYSLVPNWKPHLPICT------VLELEEGRECVIIGTLYKHM 86
QY+ +Y ARL L R +L ++ + T VLEL G + +G YK
Sbjct: 38 HQYAAMYRARLEALERRVLKAVSAKVAAGNVVGTFPQRSRVLELGIGERALCVGVAYKEA 97
Query: 87 KLKPSILDEYSKE-------------------------RSTTPLVKP------------- 108
+L P LDEY KE R+ + V P
Sbjct: 98 RLLPRFLDEYQKELVRIDAGEEEDSYGGSEAVSCSVPLRANSRGVNPTPGNCCEGDARNQ 157
Query: 109 ---HNFMHPDDHLVLEDESGRVKLGGAELLPSAYV-TGIVVALHGKETSAGEFLV----L 160
N DD + +ED+SGRV+L G +P+A V TG+V+ + G G V +
Sbjct: 158 SHLFNICGEDDEVFMEDDSGRVRLEG---IPAAVVCTGLVLGVDGTLLENGCLSVNCYAI 214
Query: 161 DVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG-------TSNPLQFQLLVDHITGHLG 213
L P+ ++S YV V GL + S T+ +LLVD+++G LG
Sbjct: 215 GDLREVYVPRTLPTVSSPTPCYVGFVCGLELCSAQTQTDAATNGRTMIELLVDYLSGTLG 274
Query: 214 DEKEQGIAAEIVHVVIAGNSIEIPRGLL--NGQNLASKDQSRLFEP------------IK 259
+ + I +VI GNSI L L D +L + ++
Sbjct: 275 STGKVVQPSYISRLVIGGNSIAPTEELRLKRKVKLDPSDHVKLSDDKQNNGTVTSASLMR 334
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF--- 316
ELD +L ++A + +++MPG ND N PQQP++ L P +A ++ TNP+ F
Sbjct: 335 ELDAILARLADSIEVELMPGDNDMTNAFHPQQPIHPLLLPEAARRSSIGFVTNPYEFVAF 394
Query: 317 ----ELDNVR------------FLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
E ++V F +SG ++ + + + + +L+ M L+ PTA
Sbjct: 395 PSDDEENHVERSGADATEGGTIFFVSSGSNLNCVNRETRFDSRLDAMSLILQSGCACPTA 454
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL----------------------LK 398
PNT+ YPFTD DPF+ PH + +Q ++ETR ++
Sbjct: 455 PNTVFSYPFTDTDPFVFPKAPHCFVCCDQPEWETRWEPLATFDPTRDTNGCGILLNEEME 514
Query: 399 G------SDRQLVRLVCIPKFSETG--VAVVVNLKNLECHTLSFGT 436
G SD VRLVC+P F++TG V V VN LE + F +
Sbjct: 515 GQSQEIESDGAGVRLVCVPTFAQTGKLVLVDVNSPTLETTYVDFAS 560
>gi|342180146|emb|CCC89622.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 561
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 142/533 (26%), Positives = 213/533 (39%), Gaps = 133/533 (24%)
Query: 28 KETYRGQQYSQIYFARLHLMRALLYSLVP----------NWKPHLPICTVLELEEGRECV 77
++ + QY+ +Y ARL + + + + PH VLEL + +
Sbjct: 32 RQRHFTHQYAAMYSARLQALEERAFQAIRAKVLDATGDGSLPPHT---RVLELVPHQRAI 88
Query: 78 IIGTLYKHMKLKPSILDEYSKE----------------------------RSTTPLVKPH 109
G +YK +L P LDEY KE S L +
Sbjct: 89 CTGIIYKQSRLLPRFLDEYQKELVRIDAGGEEDGEAMVEGPLCPDPFIVRESAVNLTFAN 148
Query: 110 -------------NFMHPDDHLVLEDESGRVKLGGAELLPSAYV-TGIVVALHGKETSAG 155
N PDD L +ED+SGRV+L E +P+ + TG+V+ + G +G
Sbjct: 149 GSDGDLRSQQCFPNICAPDDELYMEDDSGRVRL---ENIPADMMCTGVVLGVDGTLLESG 205
Query: 156 EFLV----LDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS--------GTSNPLQFQL 203
V L L P+ + +Y+ V GL +GS +L
Sbjct: 206 RLSVHRYALGDLRKVYVPRLIPNVPPRTPRYIAFVCGLELGSPQMQNSASTACARTMVEL 265
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLF-------- 255
LVD+++G +GD A+ I +VI GNSI P L + D S
Sbjct: 266 LVDYLSGAVGDSAMVAQASCITRLVIGGNSIA-PTEELRLKKKVKLDPSDHVKFGDDKGG 324
Query: 256 -------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
+ ++ELD +L +I V +++MPG ND N PQQP++ L SA ++ R
Sbjct: 325 GGAVTSAQLMRELDKVLKRIVCSVEVELMPGDNDMTNAFHPQQPMHPLLLSESARCSSMR 384
Query: 309 SCTNPHCF-------------------ELDNVRFLGTSGQTIDDLQKYSEANDQLEFMER 349
TNP+ F F +SG I + + + N +L+ M
Sbjct: 385 LVTNPYEFVALSSDESGVDASDGTNTTSKGETLFFVSSGSNIHCVSRETNINSRLDAMSF 444
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL------------- 396
LR PTAPNTL YPF D DPF+ PH + +Q +++TR
Sbjct: 445 VLRSGCACPTAPNTLFSYPFKDVDPFVFPQAPHCFVCCDQPEWQTRWEPLESFSPTYDAN 504
Query: 397 -----------LKGSDRQL--VRLVCIPKFSETGVAVVVNLKN--LECHTLSF 434
G D VRLVC+P F +TG+ V+V++ + L+ T+SF
Sbjct: 505 TNEIHVNEEGGETGKDETAAGVRLVCVPPFVQTGILVLVDVNSPKLDTTTVSF 557
>gi|261326774|emb|CBH09747.1| DNA polymerase delta subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 566
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 145/526 (27%), Positives = 221/526 (42%), Gaps = 126/526 (23%)
Query: 34 QQYSQIYFARLH-LMRALLYSLVPNWKPHLPICT------VLELEEGRECVIIGTLYKHM 86
QY+ +Y ARL L R +L ++ + T VLEL G + +G YK
Sbjct: 38 HQYAAMYRARLEALERRVLKAVSAKVAAGNVVGTFPQRSRVLELGIGERALCVGVAYKEA 97
Query: 87 KLKPSILDEYSKE-------------------------RSTTPLVKP------------- 108
+L P LDEY KE R+ + + P
Sbjct: 98 RLLPRFLDEYQKELVRIDAGEEEDSYGGSEAVSCSVPLRANSRGINPTPGTCCEGDARNQ 157
Query: 109 ---HNFMHPDDHLVLEDESGRVKLGGAELLPSAYV-TGIVVALHGKETSAGEFLV----L 160
N DD + +ED+SGRV+L G +P+A V TG+V+ + G G V +
Sbjct: 158 SHLFNICGEDDEVFMEDDSGRVRLEG---IPAAVVCTGLVLGVDGTLLENGCLSVNCYAI 214
Query: 161 DVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG-------TSNPLQFQLLVDHITGHLG 213
L P+ ++S YV V GL + S T+ +LLVD+++G LG
Sbjct: 215 GDLREVYVPRTLPTVSSPMPCYVGFVCGLELCSAQTQTDAATNGRAMIELLVDYLSGALG 274
Query: 214 DEKEQGIAAEIVHVVIAGNSIEIPRGLL--NGQNLASKDQSRLFEP------------IK 259
+ + I +VI GNSI L L D +L + ++
Sbjct: 275 STGKVVQPSYISRLVIGGNSIAPTDELRLKRKVKLDPSDHVKLSDDKQNNGTVTSASLMR 334
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF--- 316
ELD +L ++A + +++MPG ND N PQQP++ L P +A ++ TNP+ F
Sbjct: 335 ELDAILARLADSIEVELMPGDNDMTNAFHPQQPIHPLLLPEAARRSSIGFVTNPYEFVAF 394
Query: 317 ----ELDNVR------------FLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
E ++V F +SG ++ + + + + +L+ M L+ PTA
Sbjct: 395 PSDDEENHVERSGADATEGGTIFFVSSGSNLNCVNRETRFDSRLDAMSLILQSGCACPTA 454
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL----------------------LK 398
PNT+ YPFTD DPF+ PH + +Q ++ETR ++
Sbjct: 455 PNTVFSYPFTDTDPFVFPKAPHCFVCCDQPEWETRWEPLATFDPTRDTNGCGILLNEEME 514
Query: 399 G------SDRQLVRLVCIPKFSETG--VAVVVNLKNLECHTLSFGT 436
G SD VRLVC+P F++TG V V VN LE + F +
Sbjct: 515 GQSQEIESDGAGVRLVCVPTFAQTGKLVLVDVNSPTLETTYVDFAS 560
>gi|398016574|ref|XP_003861475.1| DNA polymerase delta subunit 2, putative [Leishmania donovani]
gi|322499701|emb|CBZ34775.1| DNA polymerase delta subunit 2, putative [Leishmania donovani]
Length = 590
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 148/558 (26%), Positives = 222/558 (39%), Gaps = 160/558 (28%)
Query: 34 QQYSQIYFAR--------LHLMRALLYSLVPNWKPHLPICT---VLELEEGRECVIIGTL 82
QQY+ +Y R LH ++ ++ P + P VLEL+ G V +G +
Sbjct: 35 QQYAPMYRCRMGAQYTSALHAIQRIVRE-DPMYGPEAGAMKPRRVLELQPGMPAVCVGIV 93
Query: 83 YKHMKLKPSILDEYSK-----------------------ERSTTPLVKP----------- 108
YK+MKL P LDEY ERS
Sbjct: 94 YKNMKLLPRFLDEYQSELVRIDAGDDNDEESGVVEAAPPERSEDAAAAAMRLGNEAEEDA 153
Query: 109 -------------HNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAG 155
++ + D L+LED SGRV L G L + TG+V+ ++G G
Sbjct: 154 SNDGQTLAAADEHYSVCNSADELMLEDSSGRVLLQG--LDAERFCTGVVLGVYGTLLPNG 211
Query: 156 EFLVLDVLDAGLAPQKELP---LNSGEDKYVVLVSGL--NVGSGTSNPLQ---------F 201
VL +G +P + + Y+ VSGL N+ G+S Q
Sbjct: 212 SIKVLRYAFSGDLRFTFVPRPLIRAASPCYIAFVSGLSINIPRGSSKEEQAAATRARASL 271
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS---RLFEP- 257
+LLV+ + G+ G+ + A + +VI G+SI P L + D S RL +
Sbjct: 272 ELLVEFLCGNTGNASLRAKAKCVSRLVIGGDSI-APTDELKLKKKVKLDPSDHVRLNDDK 330
Query: 258 -----------IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT 306
+++LD LL ++ V +++MPG ND ++ PQQPL+ L P + ++T
Sbjct: 331 AQASTVTSAALMRQLDTLLERVVRTVEVELMPGANDMSDAFQPQQPLHPLLLPKAGKHST 390
Query: 307 FRSCTNPHCFE------------------------------LDNVRFLGTSGQTIDDLQK 336
R +NP CF D V F TSGQ I+D+ +
Sbjct: 391 LRLVSNPFCFTAQPPAAATAELEVRSEERVGSEAKKHKVEVADGVNFFVTSGQNINDVAR 450
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR- 395
S +L+ M + PTAPNTL YPF + DPFL + PH A +Q +FETR
Sbjct: 451 ESRFPTRLDTMCMVVVSGCACPTAPNTLFSYPFCNHDPFLFQHTPHCVVACDQPQFETRY 510
Query: 396 -------------------LLKGSDRQL-----------------VRLVCIPKFSETGVA 419
L S +L VRL+C+P F+ +G
Sbjct: 511 ATLEELHEETHRSFTGPASLSVQSKEKLSAASKDEENKAVPAEAGVRLICVPSFARSGAL 570
Query: 420 VVVNLKN--LECHTLSFG 435
V+V++ + LE ++F
Sbjct: 571 VLVDVNSPTLETSVVTFS 588
>gi|146088898|ref|XP_001466176.1| putative DNA polymerase delta subunit 2 [Leishmania infantum JPCM5]
gi|134070278|emb|CAM68615.1| putative DNA polymerase delta subunit 2 [Leishmania infantum JPCM5]
Length = 591
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 148/559 (26%), Positives = 222/559 (39%), Gaps = 161/559 (28%)
Query: 34 QQYSQIYFAR--------LHLMRALLYSLVPNWKPHLPICT---VLELEEGRECVIIGTL 82
QQY+ +Y R LH ++ ++ P + P VLEL+ G V +G +
Sbjct: 35 QQYAPMYRCRMGAQYTSALHAIQRIVRE-DPMYGPEAGAMKPRRVLELQPGMPAVCVGIV 93
Query: 83 YKHMKLKPSILDEYSK-----------------------ERSTTPLVKP----------- 108
YK+MKL P LDEY ERS
Sbjct: 94 YKNMKLLPRFLDEYQSELVRIDAGDDNDEESGVVEAAPPERSEDAAAAAMRLGNEAEEDA 153
Query: 109 -------------HNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAG 155
++ + D L+LED SGRV L G L + TG+V+ ++G G
Sbjct: 154 SNDGQTLAAADEHYSVCNSADELMLEDSSGRVLLQG--LDAERFCTGVVLGVYGTLLPNG 211
Query: 156 EFLVLDVLDAGLAPQKELP---LNSGEDKYVVLVSGL--NVGSGTSNPLQ---------F 201
VL +G +P + + Y+ VSGL N+ G+S Q
Sbjct: 212 SIKVLRYAFSGDLRFTFVPRPLIRAASPCYIAFVSGLSINIPRGSSKEEQAAATRARASL 271
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS---RLFEP- 257
+LLV+ + G+ G+ + A + +VI G+SI P L + D S RL +
Sbjct: 272 ELLVEFLCGNTGNASLRAKAKCVSRLVIGGDSI-APTDELKLKKKVKLDPSDHVRLNDDK 330
Query: 258 -----------IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT 306
+++LD LL ++ V +++MPG ND ++ PQQPL+ L P + ++T
Sbjct: 331 AQASTVTSAALMRQLDTLLERVVRTVEVELMPGANDMSDAFQPQQPLHPLLLPKAGKHST 390
Query: 307 FRSCTNPHCFE------------------------------LDNVRFLGTSGQTIDDLQK 336
R +NP CF D V F TSGQ I+D+ +
Sbjct: 391 LRLVSNPFCFTAQPPAAATAELEVRSEERVGSEAKKHKVEVADGVNFFVTSGQNINDVAR 450
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR- 395
S +L+ M + PTAPNTL YPF + DPFL + PH A +Q +FETR
Sbjct: 451 ESRFPTRLDTMCMVVVSGCACPTAPNTLFSYPFCNHDPFLFQHTPHCVVACDQPQFETRY 510
Query: 396 -------------------LLKGSDRQL------------------VRLVCIPKFSETGV 418
L S +L VRL+C+P F+ +G
Sbjct: 511 ATLEELHEETHRSFTGPASLSVRSKEKLSAASTKDEENKAVPAEAGVRLICVPSFARSGA 570
Query: 419 AVVVNLKN--LECHTLSFG 435
V+V++ + LE ++F
Sbjct: 571 LVLVDVNSPTLETSVVTFS 589
>gi|71030786|ref|XP_765035.1| DNA polymerase delta small subunit [Theileria parva strain Muguga]
gi|68351991|gb|EAN32752.1| DNA polymerase delta small subunit, putative [Theileria parva]
Length = 419
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/429 (27%), Positives = 201/429 (46%), Gaps = 54/429 (12%)
Query: 22 EPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC-------TVLELEEGR 74
E F E Y+ Q Y + ++L M+ LL + +L I ++E
Sbjct: 16 ERFVTAGEGYKSQYYLR-SMSKLQSMKKLLLETIKTKWSNLKISESDPEAYKLVESINYV 74
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+CV+IGT++K MK P+ LDEY ++ + + + +D+L LED + R+ L G +
Sbjct: 75 KCVVIGTVFKQMKYHPTPLDEYI-QKFDIKVEEKSEYTDDEDYLFLEDHTQRLILVGNCI 133
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVSGLNVGS 193
P +V+G+V+A+ G +F+ D + L + E+K++ L+SGL +
Sbjct: 134 NPHKFVSGLVIAVRGYMNDENKFVTEDYTLPEIPDSLTLYNIKQEEEKFIALISGLEM-- 191
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEI----------VHVVIAGNSIEIPRGLLNG 243
+ N L ++ L+ LG+ I I V +V+AGN I G +
Sbjct: 192 -SGNELNYKSLLLLQNFLLGERYLLNIFLHIFSNSEYNKRLVRLVVAGNGI----GRCDT 246
Query: 244 QNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT 303
++L K+ D+ Q+A+ + +D+MPG DP N +LPQQ +N L S
Sbjct: 247 ESL------------KKSDLFYAQLASTINVDLMPGSLDPTNSNLPQQVINPILMENSRR 294
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
Y TFRS TNP+ F +D V +++ + + +F ++ + + L P
Sbjct: 295 YGTFRSTTNPYFFSIDGVY----------QAKQWKISVNSADF-QKLVIFIKLIPCRCTE 343
Query: 364 LGCYPFTDRDPF-LVESC--PHVYFAGNQQKFETRLLKGS-DRQLVRLVCIPKFSETGVA 419
C ++ D F L E PHV+F GN ++FE S +L +LVC+P F
Sbjct: 344 ASCKIHSELDVFNLTEDSEYPHVFFTGNCKEFEVGDFGTSGSTKLPKLVCVPSFKRDPTL 403
Query: 420 VVVNLKNLE 428
V+++L+ LE
Sbjct: 404 VLISLRTLE 412
>gi|258564392|ref|XP_002582941.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908448|gb|EEP82849.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 410
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 171/396 (43%), Gaps = 101/396 (25%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKP--- 90
QQY+ +YF RL + KP + E E + H P
Sbjct: 46 QQYADMYFLRLARL-----------KPVVSQIAAAEWEG----------FTHWTAAPPRR 84
Query: 91 -SILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHG 149
+ LD ++E + T +LEDESGR++L G L + VTG VVA+ G
Sbjct: 85 KTYLDTSNQESAQT---------------MLEDESGRLRLTGTLLQSALLVTGAVVAVLG 129
Query: 150 KETSAGEFLVLDV----------------LDAGLAPQKELPLNSGED---KYVVLVSGLN 190
E + G+F V+DV D+G +K L++ +D K + VSGL
Sbjct: 130 TENANGDFEVIDVKVPDLPPQPTRWERDSTDSGSGKRKRSLLDTADDGPRKKIAFVSGLG 189
Query: 191 VGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL-LNGQN---- 245
+ + + + LL D++ G + +I ++I GNS+ L L Q+
Sbjct: 190 ITGTSGDTVALSLLADYLLGFAEGGSIPTNSTQISRLIIVGNSLGRDVSLNLEEQDANEA 249
Query: 246 LASKDQSRLF---------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
+ K Q++ + PI LD L +I +P+ +MPG DPANF+LPQQ ++R
Sbjct: 250 VKKKRQTKKYGYDASAYNASPITHLDNFLAEILPSIPVTLMPGETDPANFALPQQAIHRA 309
Query: 297 LFPGSATYNT---------------FRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---- 337
+FP S Y + + TNP +++ R G SGQ +DD+ KY
Sbjct: 310 MFPRSRNYCSPPRSSLEEVQSEPGWLDTVTNPWQGDVEGWRLWGCSGQNVDDVLKYISLD 369
Query: 338 ---------SEANDQLEFMERTLRWRHLAPTAPNTL 364
E + +L ME LRWR PTAP+T+
Sbjct: 370 DDEIETSRDPEGDTRLRLMEAMLRWRCAVPTAPDTI 405
>gi|154338970|ref|XP_001565707.1| DNA polymerase delta subunit 2, putative [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062759|emb|CAM39205.1| DNA polymerase delta subunit 2, putative [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 135/516 (26%), Positives = 206/516 (39%), Gaps = 151/516 (29%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEY----------------------------SK 98
VLEL+ G V +G +YK+MKL P LDEY S
Sbjct: 39 VLELQPGVPAVCVGIVYKNMKLLPRFLDEYQSELVRIDAGDDDNDDESGVVEAVPLDRSA 98
Query: 99 ERSTTPLVKP--------------------HNFMHPDDHLVLEDESGRVKLGGAELLPSA 138
E + + + ++ D L+LED SGR L G L
Sbjct: 99 ETAAATMHRSNEAEEDANNDGQALAAADEHYSVCDSADELMLEDSSGRALLQG--LDAER 156
Query: 139 YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP---LNSGEDKYVVLVSGLNVGSGT 195
+ TGIV+ ++G G VL +G +P + + Y+ VSGL++
Sbjct: 157 FCTGIVLGVYGALLPNGSMKVLRYAFSGDLGSAFVPRPVIRATGPCYIAFVSGLSLNVPR 216
Query: 196 SNPLQ-----------FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ 244
N + +LLV+ + G+ G+ +G A + +VI G+SI P L +
Sbjct: 217 DNGKEAQAAASRARASLELLVEFLCGNTGNAALRGKAKCVSRLVIGGDSI-APTDELKLK 275
Query: 245 NLASKDQS---RLFEP------------IKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
D S RL + +++LD LL ++ V +++MPG ND ++ P
Sbjct: 276 KKVKLDPSDHVRLNDDKAQGNTVTSAALMRQLDTLLERVVRTVEVELMPGANDMSDAFQP 335
Query: 290 QQPLNRCLFPGSATYNTFRSCTNPHCFEL------------------------------- 318
QQPL+ L P + ++T R +NP CF
Sbjct: 336 QQPLHPLLLPKAGKHSTLRLVSNPFCFTAQPGAATVATTELLKSEECVESEAKKHKTEVA 395
Query: 319 DNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
+ V F TSGQ I+D+ + S +L+ M + PTAPNTL YPF + DPFL +
Sbjct: 396 EGVNFFVTSGQNINDVARESRFPTRLDTMCMVVVSGCACPTAPNTLFSYPFCNHDPFLFQ 455
Query: 379 SCPHVYFAGNQQKFETRL--------------------------------LKGSDRQL-- 404
+ PH A +Q +FETR KG + +
Sbjct: 456 NTPHCVVACDQPQFETRYATLDELHEETHHNFTESASSSPRLKATASAVSAKGGENKAVL 515
Query: 405 ----VRLVCIPKFSETGVAVVVNLKN--LECHTLSF 434
VRL+C+P F+ +G V+V++ + LE +SF
Sbjct: 516 PEAGVRLICVPSFARSGALVLVDVNSPTLETSVVSF 551
>gi|123454576|ref|XP_001315040.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897705|gb|EAY02817.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 388
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 189/411 (45%), Gaps = 51/411 (12%)
Query: 28 KETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVL-ELEEGRECVIIGTLYKHM 86
K Y +Q+ IY RL +R L+ S V +C L ++E + C IIG LYK++
Sbjct: 13 KSNYTNRQFFNIYQDRLKQLRPLIESQVEGV-----LCKQLNQMEPDKPCTIIGVLYKNL 67
Query: 87 KLKPSILDEYSKERSTTPLVKPHNFMHPD-DHLVLEDESGRVKLGGAELLPSAYVTGIVV 145
+ +ILDEY + P D D L LEDESGRV+L G L + +VTGIV+
Sbjct: 68 SSRQNILDEYKDIGYESQ--APEELTQSDKDTLFLEDESGRVQLVG--LQNNEFVTGIVI 123
Query: 146 ALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLV 205
+ G SA F V V+ P K++ + E + +S L +
Sbjct: 124 GVQGV-PSASTFEVTKVIYPQYNPPKKV--DVKESHTIYFISDLAINH------------ 168
Query: 206 DHITGHLGDEKEQGIAAEIVHVVIAGNSIEI----PRGLLNGQNLASKDQSRLFEPIKEL 261
D +T H + A++V V + N +++ P +++ N K L PI +L
Sbjct: 169 DKLTKHHMALAKTLNGADLV-VYLGNNFLQVEQPDPEEMISF-NERLKAMKPL--PINKL 224
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
+ T + + ++PG NDP SLPQQP + L F +NP F D +
Sbjct: 225 ESFFT-VTKSKKIVVIPGQNDPCTNSLPQQPYHPVLLSSKK----FVLASNPSKFTADGL 279
Query: 322 RFLGTSGQTIDDLQK---YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
FL +G++ D+ K Y+ ++ Q L+W H+APTAP+ L P ++D ++E
Sbjct: 280 LFLCDAGESPRDIMKTTRYTFSDAQFSI----LQWHHIAPTAPDQLPAVPVIEKDVLVME 335
Query: 379 SCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
P+V G +FE +D V+L+ +P F +T V + K E
Sbjct: 336 DTPNVLVCGLAPEFEQ-----NDYNDVKLISVPSFKDTQTIVAYDTKTNEA 381
>gi|341881730|gb|EGT37665.1| hypothetical protein CAEBREN_08130 [Caenorhabditis brenneri]
Length = 452
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 200/442 (45%), Gaps = 39/442 (8%)
Query: 25 EIQKETYRGQQYSQIYFARLHLMRALLYSLVPN--WKPHLPICTVLELEEGRECVIIGTL 82
E K+ +QY ++Y +R+ ++ + K + E ++ E ++G +
Sbjct: 22 EQDKKDAFTRQYFEVYESRVKELKPRILENAERVIGKGKYKFTQLSEAKQDEEVFVVGVI 81
Query: 83 YKHMKLKPSILDEYSKERSTT---------PLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
K ++ +PSIL E T VK + +D + LE + V+L GA
Sbjct: 82 VKRIEARPSILKTLLNEDKVTYDDYEEDDGQAVKRYA-GSSEDRIDLESDKQTVRLEGAI 140
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ TG V + GK G F V ++ P + + +V +SGL++
Sbjct: 141 SMDDC-ATGCCVGVLGKLGKEGTFHVSKLV----WPAAKCAPKMSAEGTIVFISGLDLSG 195
Query: 194 GTSNPL----QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN---- 245
T + F+ + D + H + Q I +V+ G +E + Q+
Sbjct: 196 DTEDDQLTISGFEFMSDWMNAH---GETQNHCPPIDRLVVIGPFVETKSSGCDVQSVVRT 252
Query: 246 --LASKDQSRLFEPIKELDILLTQIAAGVPL----DIMPGPNDPANFSLPQQPLNRCLFP 299
L+ ++ + + +D L++ I+ PL D+ PG DP + P P++R P
Sbjct: 253 LTLSRTERQSSAKSLITVDKLISSISER-PLVNTVDVTPGVGDPCSSMWPLPPIHRVCLP 311
Query: 300 GSA-TYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAP 358
A + TNP+ F ++ +R + SG+ + +L + S + + ++W+HLAP
Sbjct: 312 RCAMSQKKVNLVTNPYEFAVNEIRVITMSGENVTELLRTSPKWSGADVLANLVKWQHLAP 371
Query: 359 TAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL--LKGSDRQLVRLVCIPKFSET 416
P+TL +P +DRDP ++E+ PH+ GNQ E R ++G+D + +VC+PKFS+T
Sbjct: 372 NCPDTLDGFPMSDRDPLVMETTPHIIICGNQPHAEFRRVSIEGTDATCL-VVCLPKFSKT 430
Query: 417 GVAVVVNLKNLECHTLSFGTQF 438
VA +NL +L +F QF
Sbjct: 431 RVACFLNLADLTLKWQNFDHQF 452
>gi|308491108|ref|XP_003107745.1| hypothetical protein CRE_12625 [Caenorhabditis remanei]
gi|308249692|gb|EFO93644.1| hypothetical protein CRE_12625 [Caenorhabditis remanei]
Length = 452
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 115/452 (25%), Positives = 210/452 (46%), Gaps = 40/452 (8%)
Query: 17 YIFLDEPFEIQKETYRG---QQYSQIYFARLHLMRALLYSLVPN--WKPHLPICTVLELE 71
Y + + + + +E +G +QY ++Y AR++ ++ + + K ++ + +
Sbjct: 11 YKNISDRYVLTEEDKKGAFARQYFEVYEARVNALKPRIIEIAERDIGKGKFKHISLSDAK 70
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM--------HPDDHLVLEDE 123
+ E +IG + K + +PSIL E + +D + LE E
Sbjct: 71 QDEEIFVIGVIVKRIAARPSILKSLLNEDKVAYDDYEGDEEDDVKRYAGSSEDRIELESE 130
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
V+L GA + TG V + GK G F V + + P ++ S + +
Sbjct: 131 KQTVRLDGAITMDEC-ATGCCVGVLGKLGKEGVFHV----NRLIWPSSKISKKSSAEGTI 185
Query: 184 VLVSGLNVGSGTSNPLQFQLLV---DHITGHLGDEK-EQGIAAEIVHVVIAGNSIEIPRG 239
V VSGL + T + + QL + + ++ + E + I VV+ G +E
Sbjct: 186 VFVSGLEL---TGDMEEDQLTISGLEFMSEWMNSEALGENQCPPIDRVVVIGPIVETKSN 242
Query: 240 LLNGQN------LASKDQSRLFEPIKELDILLTQIAAGVPL----DIMPGPNDPANFSLP 289
+ Q+ L+ ++ + + +D L++ IA PL D+ PG DP + P
Sbjct: 243 GCDVQSVVRTLTLSRTEKQSSAKALITVDKLISSIAEK-PLVNTVDVTPGVGDPCSSMWP 301
Query: 290 QQPLNR-CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFME 348
P++R CL + + TNP+ FE++ +R + SG+ + +L + S + +
Sbjct: 302 LPPIHRVCLQRCAMSQKKVNLVTNPYEFEVNGLRVMTMSGENVTELLRTSHKWTGADVLA 361
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL--LKGSDRQLVR 406
++W+H+AP P+TL +P +RDP ++E+ PH+ GNQ + E R + GSD +
Sbjct: 362 NLVKWQHVAPNCPDTLDAFPMAERDPLVMETTPHIIVCGNQPQAEFRRVPIDGSDSTCL- 420
Query: 407 LVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
+VC+PKFS+T VA +NLK+L +F Q+
Sbjct: 421 VVCLPKFSKTRVACFLNLKDLSMKWQNFDHQY 452
>gi|238583563|ref|XP_002390281.1| hypothetical protein MPER_10466 [Moniliophthora perniciosa FA553]
gi|215453515|gb|EEB91211.1| hypothetical protein MPER_10466 [Moniliophthora perniciosa FA553]
Length = 253
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 122/207 (58%), Gaps = 13/207 (6%)
Query: 35 QYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
YS IYFARL +R L+ WK + E+ + + C I+GT+Y M LKP+++
Sbjct: 18 HYSNIYFARLRHLRDLVEERARKRWK------DLDEVLKSQLCYIVGTVYMEMPLKPNVM 71
Query: 94 DEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETS 153
++ +++RS L P P+D ++LEDESGR++L G + + VTG+++ G ET
Sbjct: 72 EDIARDRSIPSLPPPSKLWSPEDKVMLEDESGRIRLVGDCVKKAKLVTGVILGALGMETP 131
Query: 154 AGEFLVLDVLDAGLAPQ------KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDH 207
GEF V+D+ G+AP ++ ++ D+++ +VSGL+VGS +S+ + +L+++
Sbjct: 132 NGEFEVVDICYPGMAPNPTEESGNKMNIDGETDEWIAVVSGLDVGSSSSSDARIHMLIEY 191
Query: 208 ITGHLGDEKEQGIAAEIVHVVIAGNSI 234
+TG D K ++I ++IAGNS+
Sbjct: 192 LTGEECDTKYGVSPSQISRIIIAGNSV 218
>gi|268536488|ref|XP_002633379.1| Hypothetical protein CBG06130 [Caenorhabditis briggsae]
Length = 450
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/447 (24%), Positives = 198/447 (44%), Gaps = 32/447 (7%)
Query: 17 YIFLDEPFEIQKETYRG---QQYSQIYFARLHLMRALLYSLVPN--WKPHLPICTVLELE 71
Y + + + + +E +G +QY +IY AR+ ++ + K + + +
Sbjct: 11 YKNVSDRYVLTEEDKKGAFARQYFEIYEARVKELKPRILDNAERVIGKGKFKHVLLSDAK 70
Query: 72 EGRECVIIGTLYKHMKLKPSILDE--------YSKERSTTPLVKPHNFMHPDDHLVLEDE 123
+ E I G + K + +PSIL Y VK + +D + LE E
Sbjct: 71 QDEEIFITGVIVKRVLARPSILKSLLSEDKVAYDNVDDGEDDVKRYAG-SSEDRIELESE 129
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
V+L GA + TG V + GK G F V ++ P + + + +
Sbjct: 130 KQTVRLEGAISMEDC-ATGCCVGVLGKLGKEGVFHVSRLV----WPAANVTKKATTEGTL 184
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG 243
V +SGL++ ++ ++ + E+ I VV+ G +E +
Sbjct: 185 VFISGLDLSGDIEQDRLTISGLEFMSDWMNTNGEEHQCPSIDRVVMIGPFVETKSNGCDV 244
Query: 244 QN------LASKDQSRLFEPIKELDILLTQIAAGV---PLDIMPGPNDPANFSLPQQPLN 294
Q+ L+ ++ + + +D L++ I+ + +D+ P DP + P P++
Sbjct: 245 QSVVRTLTLSRPERQSSAKSLITVDKLISSISEKLLVNTIDVTPAVGDPCSSMWPLPPIH 304
Query: 295 R-CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRW 353
R CL TNP+ FE+D +R + SG+ + +L + S + + ++W
Sbjct: 305 RVCLPRCGMNEKKVNLVTNPYEFEVDGLRIMTMSGENVTELLRTSHKWSGADVLSNLVKW 364
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL--LKGSDRQLVRLVCIP 411
+H+AP P+TL +P +RDP ++ S PHV GNQ + E R + G+D + LVC+P
Sbjct: 365 QHIAPNCPDTLDAFPIAERDPLVMSSTPHVIICGNQPQAEVRRFSVDGTDASCL-LVCLP 423
Query: 412 KFSETGVAVVVNLKNLECHTLSFGTQF 438
KFS+T VA ++L +L +F QF
Sbjct: 424 KFSKTRVACFLDLSDLSLKWQNFDHQF 450
>gi|301605980|ref|XP_002932622.1| PREDICTED: DNA polymerase delta subunit 2-like [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 137/259 (52%), Gaps = 9/259 (3%)
Query: 17 YIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRE 75
Y F + + T+ +QY+ IY RL MR LL W + + + EL+ +
Sbjct: 32 YANCSSVFRLGERTFT-RQYAHIYATRLEQMRPLLIKRAKQLWGDDVAVRKLCELQGEEK 90
Query: 76 CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL 135
C ++GTL+K M+L+PSIL E S+E + P H ++ D L+LEDE R+KL GA +
Sbjct: 91 CCVVGTLFKSMELQPSILREISEEHNLLPQPARHKYISDSDELILEDELQRIKLEGATDV 150
Query: 136 PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV-VLVSGLNVGSG 194
VTG V+A+ G E AG+F+V D L Q LP S ED++V + G
Sbjct: 151 QQ-LVTGAVLAVLGSEGDAGKFMVEDFCLTSLPAQSPLPRLS-EDRFVLLTSGLGLGGGS 208
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASKD 250
+ + QLL+D +TG G E++QG AA I V++AGN + + L + L+ K
Sbjct: 209 GDSLMGLQLLLDLVTGQAGAEEDQGCAARISRVILAGNLLSQNTQGKDSLNKAKYLSKKT 268
Query: 251 QSRLFEPIKELDILLTQIA 269
Q+ E +K LD +L Q++
Sbjct: 269 QAASVEAVKMLDEILLQLS 287
>gi|17539782|ref|NP_502177.1| Protein F12F6.7 [Caenorhabditis elegans]
gi|13431470|sp|Q19366.1|DPOD2_CAEEL RecName: Full=Probable DNA polymerase delta small subunit
gi|3875793|emb|CAA97785.1| Protein F12F6.7 [Caenorhabditis elegans]
Length = 451
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 193/442 (43%), Gaps = 40/442 (9%)
Query: 25 EIQKETYRGQQYSQIYFARLHLM--RALLYSLVPNWKPHLPICTVLELEEGRECVIIGTL 82
E K+ +QY ++Y ARL + R L + K + + ++ E ++G +
Sbjct: 22 EKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGKFTHSQLSDAKQDEEIFVVGVI 81
Query: 83 YKHMKLKPSILDEYSKERSTTPLVKPHNFMHP---------DDHLVLEDESGRVKLGGAE 133
K + +PSIL E + +D + LE + V+L G
Sbjct: 82 VKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSIEDRIELESDKQTVRLEG-N 140
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ TG V + GK G F V + + P ++P D + VSGL++
Sbjct: 141 ISMDECATGCCVGVLGKLGKEGVFHV----NRLVWPSVKVPKKVAVDGTIAFVSGLDLTG 196
Query: 194 G------TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN-- 245
T + L+F + D + +G+E + I +V+ G +E + Q+
Sbjct: 197 DLEDDRLTISGLEF--MADWMNVQVGNENQ---CPPIDRLVVIGPLVETKSNGCDVQSVV 251
Query: 246 ----LASKDQSRLFEPIKELDILLTQIAAGVPL----DIMPGPNDPANFSLPQQPLNRCL 297
L+ ++ + +D ++ IA PL D+ PG DP + P P++R
Sbjct: 252 RTLTLSRAEKHSSTASLITVDKIINSIAEK-PLVNTVDVTPGVGDPCSSMWPLPPIHRVC 310
Query: 298 FPGSATYNT-FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHL 356
P + TNP+ FE++ +R + SG+ + +L + S + +E ++W+H+
Sbjct: 311 LPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADAIENIIKWQHV 370
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
AP P+TL +P +RDP +++ PHV GNQ E R + D +VC+PKFS+T
Sbjct: 371 APNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIP-IDGSNCLVVCLPKFSKT 429
Query: 417 GVAVVVNLKNLECHTLSFGTQF 438
VA +NL +L +F QF
Sbjct: 430 RVACFLNLSDLSLKWQNFDHQF 451
>gi|449691738|ref|XP_004212780.1| PREDICTED: DNA polymerase delta subunit 2-like, partial [Hydra
magnipapillata]
Length = 215
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 119/212 (56%), Gaps = 7/212 (3%)
Query: 9 RLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTV 67
+++R +Y + + F K+ QY Q+Y RL MR + + W + I +
Sbjct: 5 KIERDTCSYKNVSDKFYFSKQRKFDLQYFQLYTVRLSAMRQRIIDVAKKKWGKDIKIMEL 64
Query: 68 LELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRV 127
+++EG +CV++G L++ M+L+PSIL E ++E PL + DD L LE + R+
Sbjct: 65 SDIKEGEDCVVVGILFRKMELQPSILKEIAQEEGVIPLPPHEKYTSTDDILYLEAQQQRI 124
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL----APQKELPLNSGEDKYV 183
L G ++ S+ +TG VVA+ G E S+G+F+V++ GL P + L ED+Y+
Sbjct: 125 VLIG-DIEVSSSITGSVVAVRGHEDSSGKFVVVNFSYCGLPYLPCPNIDACLVK-EDRYL 182
Query: 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDE 215
+L SGL +G + N L Q+++D ++G LG+E
Sbjct: 183 LLTSGLGIGDLSENCLLLQIVIDLVSGKLGNE 214
>gi|308446195|ref|XP_003087117.1| hypothetical protein CRE_30357 [Caenorhabditis remanei]
gi|308261965|gb|EFP05918.1| hypothetical protein CRE_30357 [Caenorhabditis remanei]
Length = 440
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 201/439 (45%), Gaps = 40/439 (9%)
Query: 17 YIFLDEPFEIQKETYRG---QQYSQIYFARLHLMRALLYSLVPN--WKPHLPICTVLELE 71
Y + + + + +E +G +QY ++Y AR++ ++ + + K ++ + +
Sbjct: 11 YKNVSDRYVLTEEDKKGAFARQYFEVYEARVNALKPRIIEIAERDIGKGKFKHISLSDAK 70
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM--------HPDDHLVLEDE 123
+ E +IG + K + +PSIL E + +D + LE E
Sbjct: 71 QDEEIFVIGVIVKRIAARPSILKSLLNEDKVAYDDYEGDEEDDVKRYAGSSEDRIELESE 130
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYV 183
V+L GA + TG V + GK G F V + + P ++ S + +
Sbjct: 131 KQTVRLDGAISMDEC-ATGCCVGVLGKLGKEGVFHV----NRLIWPSSKISKKSSAEGTI 185
Query: 184 VLVSGLNVGSGTSNPLQFQLLV---DHITGHLGDEK-EQGIAAEIVHVVIAGNSIEIPRG 239
V VSGL + T + + QL + + ++ + E + I VV+ G +E
Sbjct: 186 VFVSGLEL---TGDMEEDQLTISGLEFMSEWMNSEAFGENQCPPIDRVVVIGPIVETKSN 242
Query: 240 LLNGQN------LASKDQSRLFEPIKELDILLTQIAAGVPL----DIMPGPNDPANFSLP 289
+ Q+ L+ ++ + + +D L++ IA PL D+ PG DP + P
Sbjct: 243 GCDVQSVVRTLTLSRTEKQSSAKALITVDKLISSIAEK-PLVNTVDVTPGVGDPCSSMWP 301
Query: 290 QQPLNR-CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFME 348
P++R CL + + TNP+ FE++ +R + SG+ + +L + S + +
Sbjct: 302 LPPIHRVCLQRCAMSQKKVNLVTNPYEFEVNGLRVMTMSGENVTELLRTSHKWTGADVLA 361
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL--LKGSDRQLVR 406
++W+H+AP P+TL +P +RDP ++E+ PH+ GNQ + E R + GSD +
Sbjct: 362 NLVKWQHVAPNCPDTLDAFPMAERDPLVMETTPHIIVCGNQPQAEFRRVPIDGSDSTCL- 420
Query: 407 LVCIPKFSETGVAVVVNLK 425
+VC+PKFS +++ L+
Sbjct: 421 VVCLPKFSMNPCCMLLKLE 439
>gi|339264829|ref|XP_003366458.1| DNA polymerase subunit delta-2 [Trichinella spiralis]
gi|316963190|gb|EFV48949.1| DNA polymerase subunit delta-2 [Trichinella spiralis]
Length = 323
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 18/240 (7%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHL-MRALLYSLVPNWKPHLPIC 65
+ + +R + T+I ++ F I +QY IY +RL RAL+ + PI
Sbjct: 32 QNKCKRAKGTFISFNDKFMINVNADFQRQYFYIYRSRLEYGRRALIEKAHKTYGESKPIR 91
Query: 66 TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDES 124
+ EL E ECV IGT+ K L+P++L E + E P + P D +VLEDE+
Sbjct: 92 RISELVEREECVTIGTVCKIQDLRPNVLKEIADEGHVIPQPIAPLKCTSDTDEVVLEDEN 151
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL-APQKELP----LNSGE 179
R+KL G+ V IVVA+ G TS G+F V D++ + AP K + + +
Sbjct: 152 LRIKLIGS-------VESIVVAVCGMVTSGGKFHVDDIIFLPVSAPTKPVADPGSTSQVD 204
Query: 180 DKYVVLVSGLNV----GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
+YV+LVSGL G+G L+ +L+ + G G+++EQ ++I ++IAGNSI+
Sbjct: 205 SRYVLLVSGLGFDAREGAGGMGQLRAHILLQWLLGQCGEQREQSKVSQICRLIIAGNSIQ 264
>gi|440297741|gb|ELP90382.1| DNA polymerase delta small subunit, putative [Entamoeba invadens
IP1]
Length = 398
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 107/421 (25%), Positives = 180/421 (42%), Gaps = 56/421 (13%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLY 83
FE K Y QQYS+IY +RL L+R LL L+ + + T L E +IGT++
Sbjct: 10 FETPKMDY-SQQYSKIYSSRLTLLRPLLEVLIEKKYEGMSVQTRLTNIPSGETSLIGTIF 68
Query: 84 KHMKLKPSILDEYSKERSTTPLVKPHNFMHP-----DDHLVLEDESGRVKLGGAELLPSA 138
K K P++L ++ K+ + +F P DD LED G L + +
Sbjct: 69 KKSKKLPTVLAQHKKDPKHIKI----DFTQPPFHADDDSAYLEDLIGHTDLVMKPEVLNT 124
Query: 139 YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNP 198
+G V+A+ G + G F V DV+ P + +N K + ++S + + ++
Sbjct: 125 ITSGTVIAVIGTINTEGFFNVTDVIFPYEEPIETTVMNCDATKNITVISDIRFSACKTDL 184
Query: 199 LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258
+ + +L K + I VI + +E L +
Sbjct: 185 MLYDVL-----------KNKKIELGTDVFVIGNHYLESMGSPL----------------V 217
Query: 259 KELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNT-----FRSCTNP 313
E D L++++ G+P+ ++P +DP N LP QP +R +F S NT F +NP
Sbjct: 218 DEYDGFLSEVSKGIPVTVIPEGDDPTNAVLPFQPFHRAMFVKSMKNNTETQKSFNLVSNP 277
Query: 314 HCFELDNVRFLGTSGQTI---DDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
L ++ + S + DL D F L+ HL P AP+ CYP+
Sbjct: 278 SIVTLGDITIMFLSQEVFVRAMDLTILKTPQDVFCFF---LKAGHLCPFAPSMFPCYPY- 333
Query: 371 DRDPFLV-ESCPHVYFAGNQQK--FETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNL 427
++DPF++ E P + G ++ + + + + LV +P F + VV+N +
Sbjct: 334 EKDPFVLNEPFPDFFIVGGFEEMCYSVNFMGKT----ICLVTVPSFYKEKKFVVLNTDSH 389
Query: 428 E 428
E
Sbjct: 390 E 390
>gi|85014271|ref|XP_955631.1| DNA polymerase delta regulatory subunit [Encephalitozoon cuniculi
GB-M1]
gi|19171325|emb|CAD27050.1| DNA POLYMERASE DELTA SMALL SUBUNIT [Encephalitozoon cuniculi GB-M1]
Length = 424
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 186/449 (41%), Gaps = 82/449 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGR---ECVIIGTLYKHMKLKP 90
Q+++ Y ARL +R + + +L++E GR CVI+GTL+ LKP
Sbjct: 10 HQFNRTYDARLMELRPYIIRSAKASGTTPVLDAILDIEMGRGGERCVIVGTLFIASDLKP 69
Query: 91 SILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV--------TG 142
+I D ++ ++ + + LED SG+++L E L V TG
Sbjct: 70 TIFDRIDRKSKKIKEIEAKTYHSQEVKYFLEDGSGKIEL---EFLDMKAVYRKHFVISTG 126
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKE--LPLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
+ + + G+ G FL DVL +P+ P + G + + VSGL++G G N +
Sbjct: 127 MCIGVTGRMAEKGRFLAEDVLFPFSSPRGLPCTPRSQGPSQKLCFVSGLSIGGGNKNRER 186
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260
++ D++ + G+ ++ + G E+ R +L+ E
Sbjct: 187 MMVIADYL-------RMVGVHEYVIIGCLFGGPREVDRQILS-----------------E 222
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
LD +L + G + ++P D + LP +P++ LF T S NP +D
Sbjct: 223 LDGILGYL--GTSISLVPNIGDFGSRILPLEPIHPKLFASPVT-----SHPNPSSLVVDG 275
Query: 321 VRFLGTSGQTIDDLQKY--------------------------------SEANDQLEFME 348
R L T+ ++DL KY ++ + + +
Sbjct: 276 RRILVTTRFVVEDLLKYLPQDLRDVQGEAFEYKMHLDMAEIGNLVPRNMADEKNIINALS 335
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
++ H+ PTAP+TL PF+++DPF+V + G+ +F L S+ L
Sbjct: 336 TLVKVGHVCPTAPDTLQSVPFSEKDPFVVTDQTDYFCVGDTDRF---LDGQSEDGATLLF 392
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
+P+FS V+++++ + F +
Sbjct: 393 TVPRFSRKHEVVILDMEARALDVVRFDME 421
>gi|449330175|gb|AGE96437.1| DNA polymerase delta small subunit [Encephalitozoon cuniculi]
Length = 424
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 186/449 (41%), Gaps = 82/449 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGR---ECVIIGTLYKHMKLKP 90
Q+++ Y ARL +R + + +L++E GR CVI+GTL+ LKP
Sbjct: 10 HQFNRTYDARLMELRPYIIRSAKASGTTPVLDAILDIEMGRGGERCVIVGTLFIASDLKP 69
Query: 91 SILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV--------TG 142
+I D ++ ++ + + LED SG+++L E L V TG
Sbjct: 70 TIFDRIDRKSKKIKEIEAKTYHTQEVKYFLEDGSGKIEL---EFLDMKAVYRKHFVISTG 126
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKE--LPLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
+ + + G+ G FL DVL +P+ P + G + + VSGL++G G N +
Sbjct: 127 MCIGVTGRMAEKGRFLAEDVLFPFSSPRGLPCTPRSQGPSQKLCFVSGLSIGGGNKNRER 186
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260
++ D++ + G+ ++ + G E+ R +L+ E
Sbjct: 187 MMVIADYL-------RMVGVHEYVIIGCLFGGPREVDRQILS-----------------E 222
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
LD +L + G + ++P D + LP +P++ LF T S NP +D
Sbjct: 223 LDGILGYL--GTSISLVPNIGDFGSRILPLEPIHPKLFASPVT-----SHPNPSSLVVDG 275
Query: 321 VRFLGTSGQTIDDLQKY--------------------------------SEANDQLEFME 348
R L T+ ++DL KY ++ + + +
Sbjct: 276 KRILVTTRFVVEDLLKYLPQDLRDVQGEAFEYKMHLDMAEIGNLVPRNMADEKNIINALS 335
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
++ H+ PTAP+TL PF+++DPF+V + G+ +F L S+ L
Sbjct: 336 TLVKVGHVCPTAPDTLQSVPFSEKDPFVVTDQTDYFCVGDTDRF---LDGQSEDGATLLF 392
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
+P+FS V+++++ + F +
Sbjct: 393 TVPRFSRKHEVVILDMEARALDVVRFDME 421
>gi|403339974|gb|EJY69249.1| Archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Oxytricha trifallax]
Length = 497
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 134/293 (45%), Gaps = 48/293 (16%)
Query: 35 QYSQIYFARLHLMRALLYSLVPN-WKPH-------LPIC---TVLELEEGRECVIIGTLY 83
QY+ Y+ RL L++ ++ W + +C +L+++ V+IGTL+
Sbjct: 58 QYATFYYKRLSLLKDMVQRKSHELWHKNETYQNNGTGLCYLQNILDIQPYMTTVLIGTLF 117
Query: 84 KHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL-PSAYVTG 142
K M LKP IL S V + P+D+LVLED SGR+K+ + P +VTG
Sbjct: 118 KEMPLKPCILSNLVGVISDDKSV--DRYCSPEDYLVLEDSSGRIKIKKQRKINPDEFVTG 175
Query: 143 IVVALHGKETSAGEFLVLDVLDAGL--------APQ-----------KEL------PLNS 177
+V G+ G F V D AGL PQ +EL NS
Sbjct: 176 AIVGFLGQVDKNGNFEVYDFCFAGLDLAQSGLQIPQTVKVDKNTAVLEELIKGINDNSNS 235
Query: 178 GEDKYVV-LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE- 235
+ K +V +SGL GS + +QLL + G G E+EQ ++A I +++ GNSI+
Sbjct: 236 NQGKNIVAFISGLEFGSVYNKQTIYQLL-QFLRGDFGTEQEQKLSASIKRLIVCGNSIQE 294
Query: 236 ------IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPND 282
+ RG Q + + LFE + + L + A + +DIMPG ND
Sbjct: 295 VEEQDLVNRGSFRTQKINDNVYTELFEVTDQFEEFLNKAAQFIDIDIMPGEND 347
>gi|407043539|gb|EKE42004.1| DNA polymerase epsilon subunit B domain containing protein
[Entamoeba nuttalli P19]
Length = 395
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 182/423 (43%), Gaps = 43/423 (10%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++R + + F ++K Y +QY IYF RL +R LL V + IC V +
Sbjct: 1 MKRPEVDIVIEKTSFLMEKMEY-TEQYGTIYFDRLKRLRPLLEISVKKVDSN--ICIVEK 57
Query: 70 LE---EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESG 125
L +GR +IGTL+K K P++L++Y +S + +++ D LED +
Sbjct: 58 LSHIPQGR-VALIGTLFKKSKKIPTLLNQYKSIKSVDSINFDEDSYVDDSDTCYLEDITS 116
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVL 185
V L + + V+G +A+ G+ ++ F + +L P+ + Y+ L
Sbjct: 117 HVNLIIDKDQLAHIVSGTALAVIGELSNDSSFEIKSILYPYDKPKPTKLIEDETRCYIAL 176
Query: 186 VSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
V+ + S + + +L + + L I H ++ G + P
Sbjct: 177 VNDIQYSSEKKDLILHNILSNELPFPL-----------IAHAILIGKHVSDPSF------ 219
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYN 305
I + D L+ + + + +P +DP N P QP++ +F +++ +
Sbjct: 220 ------------IPQYDWFLSSVCNNLNIVTIPSRDDPTNAVYPYQPIHPSIFAHASSKS 267
Query: 306 TFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLG 365
T+ S TNP + VR L SG I K + E + + + HL P AP+T
Sbjct: 268 TYHSTTNPSIISFNGVRTLILSGDVIQHYMKLTTFKTVNEVILQLFQCGHLCPCAPSTFP 327
Query: 366 CYPFTDRDPFLVES-CPHVYFAGN-QQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
C+P DPF++E P V G ++ ++ G + + +V +P F++ ++ +
Sbjct: 328 CFP-ASSDPFILEEPFPDVIVIGGFPEQCDSFDFMG---KTITIVTVPSFAKQKTIILFD 383
Query: 424 LKN 426
+N
Sbjct: 384 FEN 386
>gi|270011510|gb|EFA07958.1| hypothetical protein TcasGA2_TC005539 [Tribolium castaneum]
Length = 295
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 105/205 (51%), Gaps = 9/205 (4%)
Query: 34 QQYSQIYFARLHLMRALL-YSLVPNWKPHLPICTVLELEEGR--ECVIIGTLYKHMKLKP 90
+QY IY ARL M ALL ++ W PIC + +L E +CV+IGTL+K+ KLKP
Sbjct: 25 KQYFNIYLARLKEMTALLEVNIAKKWGTQYPICKLHKLSEENHPKCVVIGTLFKNQKLKP 84
Query: 91 SILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAY-VTGIVVALHG 149
SIL + ++E P +F D L +EDE R + +P Y VTGI AL G
Sbjct: 85 SILKQLAEEDQLVPQPIVTHFTDKSDELFIEDELQRYLI--ISCIPCDYLVTGISCALLG 142
Query: 150 KETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHIT 209
G F+V D A PQ PL + +V+ +SGL++ + L QL ++
Sbjct: 143 TADDKGRFIVEDYTFADFRPQIPRPL-LDDSAFVIFLSGLDLVNSPQCDLNLQLFTFWLS 201
Query: 210 GHLGDEKEQGIAAEIVHVVIAGNSI 234
G + A++I V+IAGNSI
Sbjct: 202 GLCDVAPFR--ASKITRVIIAGNSI 224
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 293 LNRCLFPGSATYNT----FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFME 348
+ R + G++ NT +NP+ + L VR LGTSGQ + D+ +Y E D LE +E
Sbjct: 214 ITRVIIAGNSIRNTPEQSVNQVSNPYFYSLGGVRILGTSGQPVRDVMRYCEITDPLEVLE 273
Query: 349 RTLRWRHLAPTAPNTLGCY 367
L+W HLAPTAP G +
Sbjct: 274 NCLKWGHLAPTAPRYFGVF 292
>gi|183230790|ref|XP_001913482.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|169802748|gb|EDS89734.1| hypothetical protein EHI_141410 [Entamoeba histolytica HM-1:IMSS]
gi|449704541|gb|EMD44767.1| DNA polymerase delta small subunit, putative [Entamoeba histolytica
KU27]
Length = 395
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 182/423 (43%), Gaps = 43/423 (10%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++R + + F ++K Y +QY IYF RL +R LL V + IC V +
Sbjct: 1 MKRPEVDIVIEKTSFLMEKMEY-TEQYGTIYFDRLKRLRPLLEISVKKVDSN--ICIVEK 57
Query: 70 LE---EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESG 125
L +GR +IGTL+K K P++L++Y +S + +++ D LED +
Sbjct: 58 LSHIPQGR-VALIGTLFKKSKKIPTLLNQYKSIKSVDSISFDEDSYVDDSDTCYLEDITS 116
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVL 185
V L + + V+G +A+ G+ ++ F + +L P+ + Y+ L
Sbjct: 117 HVNLIIDKDQLAHIVSGTALAVIGELSNDSSFEIKSILYPYDKPKPTKLIEDETRCYIAL 176
Query: 186 VSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
V+ + S + + +L + + L I H ++ G + P
Sbjct: 177 VNDIQYSSEKKDLILHNILSNELPFPL-----------IAHAILIGKHVSDPSF------ 219
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYN 305
I + D L+ + + + +P +DP N P QP++ +F +++ +
Sbjct: 220 ------------IPQYDWFLSSVCNNLNIVTIPSRDDPTNAVYPYQPIHPSIFAHASSKS 267
Query: 306 TFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLG 365
T+ S TNP + VR L SG I K + E + + + HL P AP+T
Sbjct: 268 TYHSTTNPSIISFNGVRTLILSGDVIQHYMKLTTFKTVNEVILQLFQCGHLCPCAPSTFP 327
Query: 366 CYPFTDRDPFLVES-CPHVYFAGN-QQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVN 423
C+P DPF++E P V G ++ ++ G + + +V +P F++ ++ +
Sbjct: 328 CFP-ASSDPFILEEPFPDVIVIGGFPEQCDSFNFMG---KTITIVTVPSFAKQKTIILFD 383
Query: 424 LKN 426
+N
Sbjct: 384 FEN 386
>gi|167393588|ref|XP_001740638.1| DNA polymerase delta small subunit [Entamoeba dispar SAW760]
gi|165895179|gb|EDR22929.1| DNA polymerase delta small subunit, putative [Entamoeba dispar
SAW760]
Length = 395
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/420 (22%), Positives = 178/420 (42%), Gaps = 37/420 (8%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++R + + F ++K Y +QY IYF RL +R LL V ++ I L
Sbjct: 1 MKRPEVNIVIEKTSFLMEKMEYI-EQYGTIYFDRLKRLRPLLEISVKKVDSNICIVEKLS 59
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESGRVK 128
+IGTL+K K P++L++Y +S + +++ D LED + V
Sbjct: 60 HIPQGTVALIGTLFKKSKKIPTLLNQYKSIKSVDSISFNEDSYVDDSDTCYLEDITSHVN 119
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
L + + V+G +A+ G+ + F + +L P+ + S Y+ LV+
Sbjct: 120 LIINKDQLAHIVSGTALAVIGELINDLSFEIKSILYPYDKPKPTKLIESETHCYIALVND 179
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS 248
+ S + + +L + + L I H ++ G + P
Sbjct: 180 IQYSSEKKDLILHNILSNELPFPL-----------IAHAILIGKHVSDPSF--------- 219
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
I + D L+ + + + +P +DP N P QP++ +F +++ +T+
Sbjct: 220 ---------IPQYDWFLSSVCNNLNIITIPSRDDPTNAVYPYQPIHPSIFAHASSKSTYH 270
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
S TNP ++VR L SG I K + E + + + HL P AP+T C+P
Sbjct: 271 STTNPSIISFNDVRTLILSGDIIQHYLKLTTFKTVNEVILQLFQCGHLCPCAPSTFPCFP 330
Query: 369 FTDRDPFLVES-CPHVYFAGN-QQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
DPF++E P V G ++ ++ G + + +V +P F++ V+ + +N
Sbjct: 331 -ASTDPFILEEPFPDVIVIGGFPEQCDSFDFMG---KTITIVTVPSFAKQKTLVLFDFEN 386
>gi|303390663|ref|XP_003073562.1| DNA polymerase delta regulatory subunit B [Encephalitozoon
intestinalis ATCC 50506]
gi|303302709|gb|ADM12202.1| DNA polymerase delta regulatory subunit B [Encephalitozoon
intestinalis ATCC 50506]
Length = 425
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 111/449 (24%), Positives = 191/449 (42%), Gaps = 82/449 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPIC-TVLELEEGRE---CVIIGTLYKHMKLK 89
Q+++ Y ARL ++ + V + +PI T+L +EE + CVI+GTL+ LK
Sbjct: 11 HQFNRTYDARLAELKPYIIRSV-RAQNGVPILDTILGVEEELDTSTCVIVGTLFVASDLK 69
Query: 90 PSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK---LGGAELLPSAYV--TGIV 144
PSI D+ ++ V+ + D +LED SGR++ L ++ +V TG+
Sbjct: 70 PSIFDKIDRKSKKLKEVETKTYYTEDIKYLLEDGSGRIELEFLDVGDIYRKHFVLCTGMC 129
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGE---DKYVVLVSGLNVGSGTSNPLQF 201
V + G+ G+FL D++ P + LPL E K + +SGL++ G+ N +
Sbjct: 130 VGVQGRRAKKGKFLAEDIIFPFSNP-RSLPLGFSEVRPGKRLCFISGLSLDDGSKNKERM 188
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261
+L D++ + G++ +V G S E+ R +L+ EL
Sbjct: 189 MVLCDYL-------RIVGVSEYVVIGSFFGESKEVSRQMLS-----------------EL 224
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
D +L A + +++P D + LP P++ LF + S NP ++D
Sbjct: 225 DDVLGYAKAKI--NLVPNTGDFGSKILPLMPVHPKLFTFAVA-----SHANPCRLDIDGR 277
Query: 322 RFLGTSGQTIDDLQKY---------------------------------SEANDQLEFME 348
+ L T+ I+D+ +Y SE N + M
Sbjct: 278 KVLTTTRFVIEDILRYLPQDLKDVQGEAFEYKMHLDMEKIEDIRPKSMNSERN-IINAMR 336
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLV 408
++ H+ PTAP+T+ PF+ +D F+V + G +F L S+
Sbjct: 337 VLMKAGHVCPTAPDTVPSVPFSGKDLFVVADPIDYFCVGGTDEF---LDGQSEDNSTLFF 393
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSFGTQ 437
IPKFS+ VV++ E + F +
Sbjct: 394 TIPKFSKRHEVVVLDTGTRELEVVRFDMK 422
>gi|402580374|gb|EJW74324.1| hypothetical protein WUBG_14769 [Wuchereria bancrofti]
Length = 136
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 68/101 (67%)
Query: 328 GQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG 387
G+ + DL++Y++ + +E + + L W+HLAPT P+T+ +PF DRDPF++ES PH+ FA
Sbjct: 21 GECLSDLKRYTKTLNGVELLSKILDWQHLAPTIPDTVDGFPFIDRDPFIIESFPHILFAA 80
Query: 388 NQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
NQ + L++ + L+ +P F++T V+VNL+NLE
Sbjct: 81 NQPEASHALVEFEGNRRTLLLSVPSFTKTFSMVLVNLRNLE 121
>gi|396082121|gb|AFN83733.1| DNA polymerase delta regulatory subunit B [Encephalitozoon romaleae
SJ-2008]
Length = 425
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 185/447 (41%), Gaps = 84/447 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEE---GRECVIIGTLYKHMKLKP 90
Q+++ Y ARL +R + + ++L +EE R CVIIGTL+ LKP
Sbjct: 11 HQFNRTYDARLAELRPYIIKSAKALNAGPILDSILGIEEEPGNRRCVIIGTLFIASDLKP 70
Query: 91 SILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV--------TG 142
+I D+ +++ ++ + + LED SGRV++ E L +++ TG
Sbjct: 71 TIFDKINRKSKKIKEMEAKTYYSQEIKYFLEDGSGRVEV---EFLDISWIYQRNFVISTG 127
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQK--ELPLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
+ + + G T +FL D+L PQ + N + V +SG ++ + N +
Sbjct: 128 MCIGVAGAMTERTKFLAEDILFPFSHPQSFPYISRNLNSRQRVCFISGPSISNENKNRER 187
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260
+++D++ + G+ I+ S E+ + +L+
Sbjct: 188 MMVIIDYL-------RMTGVKEYIMIGNFFAESKEVSKQMLS-----------------L 223
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
LD +L AG ++++P D + LP P++ LF NT NP E+D
Sbjct: 224 LDSVLKY--AGGRINLIPNIRDFGSRVLPLSPVHPKLFTLPVGANT-----NPCHLEVDG 276
Query: 321 VRFLGTSGQTIDDLQKY--------------------------------SEANDQLEFME 348
+ L T+ ++DL KY S + + +E
Sbjct: 277 RKVLITTRFVVEDLLKYLPQDLENVQGNNFEYKMHLDMEKINEAAPRSMSNEGNIIRALE 336
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG-SDRQLVRL 407
++ H+ PTAP+T+ PF+ +DPF+V G+ +F L+G S+
Sbjct: 337 VLMKAGHVCPTAPDTIQSVPFSGKDPFVVTGQVDYLCVGDTDEF----LEGQSENGTTLF 392
Query: 408 VCIPKFSETGVAVVVNLKNLECHTLSF 434
IP+FSE VV++++ + F
Sbjct: 393 FTIPRFSERHEVVVLDMETRILEVVRF 419
>gi|358333387|dbj|GAA51907.1| serine/threonine-protein kinase VRK1 [Clonorchis sinensis]
Length = 1281
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 16/138 (11%)
Query: 268 IAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSC------TNPHCFELDNV 321
+A G+P+D++PGP+D A+ LPQQP++ FP + SC TNP+ L
Sbjct: 965 VANGLPVDLLPGPSDAASQLLPQQPIHPSAFPLAVARAGGASCGGLCGRTNPYACCLFGR 1024
Query: 322 RFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESC- 380
+ L TSGQ ++DL Y++ + ME TL W HLAPT P+TL YP D L+E+
Sbjct: 1025 KILATSGQAVNDLSLYTDLETPCDRMEATLLWGHLAPTCPDTLPGYPLLKNDLLLMETSS 1084
Query: 381 ---------PHVYFAGNQ 389
P +Y AG Q
Sbjct: 1085 ADSRLSPDYPDIYVAGCQ 1102
>gi|429962362|gb|ELA41906.1| hypothetical protein VICG_01090 [Vittaforma corneae ATCC 50505]
Length = 392
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 180/413 (43%), Gaps = 56/413 (13%)
Query: 33 GQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSI 92
+QY+ Y R + MR L+ S + LP+ L + EC++I L KLK SI
Sbjct: 7 SRQYNISYITRYNRMRELIMSNPSISEYSLPL-KKLGDDIFEECIVIAILVLDSKLKFSI 65
Query: 93 LDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLP--SAYVTGIVVALHGK 150
L + P V+ + P+ L +ED SG++ + ++ S TG V+ G
Sbjct: 66 L------QMNDPNVESY---VPNSQLYIEDFSGKLPIVFSQSFNKLSLLCTGTVLGFVGC 116
Query: 151 ETSAGEFLVLDVLDAGLAPQKELPLNSG---EDKYVVLVSGLNVGSGTSNPLQFQLLVDH 207
+ F+ DV+ E+P N+ + G S N L L+ +
Sbjct: 117 KIETNVFVCTDVI---FPKPVEVPANASIRNSTDANIKSDGRPAKSTVENVL---LMSNI 170
Query: 208 ITGHLGDEKEQGIA----AEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
+ H EK + + ++ +V+ G+ + ++ D S EL+
Sbjct: 171 VLNHSNFEKCKAMVDYFYKKVSSIVVFGD--------IYTESNREPDFSDFNNIFNELND 222
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
QI ++PGPNDP LPQ PL++ LF R+ ++P + +
Sbjct: 223 FKGQIV------LVPGPNDPTTKMLPQNPLHQ-LFFDQRLSTCLRNLSHPAQETVCGKKV 275
Query: 324 LGTSGQTIDDLQKYSE---ANDQL-------EFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
+ + Q ++DL+KY+ A Q + +E+ +R R +AP P+T+G PF + D
Sbjct: 276 VFMNNQILNDLRKYTMNIVAGPQTPIVLGDADILEQLIRIRLIAPNCPDTVGSTPFFEHD 335
Query: 374 PFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
PFL++ C ++ G ++ R+ K + VCIP FS++ AV+ + +
Sbjct: 336 PFLIDDCNYLVCGGCKEFQIKRVGK------IVAVCIPDFSKSHSAVLADFSS 382
>gi|429964639|gb|ELA46637.1| hypothetical protein VCUG_01863 [Vavraia culicis 'floridensis']
Length = 386
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 179/431 (41%), Gaps = 98/431 (22%)
Query: 23 PFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPIC---TVL-ELEEGREC-- 76
PFE+++ QY+Q Y RL MR L+ +L C T+L L E
Sbjct: 31 PFEMKENFLFQGQYNQTYVTRLVKMRPLI---------NLSACKNATILPNLSESSNANG 81
Query: 77 --VIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLV--LEDESGRVKLGGA 132
+ LY K +I DE T L+ + P ++L +EDES RV++
Sbjct: 82 PVAFVALLYVDGTNKETIFDE-------TGLINKERVVKPYENLTYYVEDESCRVEVIFE 134
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVG 192
+VTG V+ E + + DV+ P++ E + ++ L +
Sbjct: 135 P--EGLFVTGQVLGFLA-EKNTHSLTIKDVI----YPEQLEQTGQPEHDVICFIADLKIR 187
Query: 193 SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS 252
+ + +++D+I+ + + +VI G+ +
Sbjct: 188 NSMG---ELNVVIDYISN----------SKRVTDLVIIGDLFD----------------- 217
Query: 253 RLFEPIKELDILLTQIAAGVPLD--IMPGPNDPANFSLPQQPL-NR-----CLF-PGSAT 303
E KE LLTQ D I+P NDP N LPQQP+ NR CLF P A
Sbjct: 218 ---EVTKENADLLTQFIENFGADTFIIPNTNDPTNKLLPQQPISNRLIDYNCLFLPSPAQ 274
Query: 304 YNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNT 363
+ T + L ++D++ Y E + ++ M+ +R RH+ PTAP+T
Sbjct: 275 FET-------------GTKMLFIPPVAVNDIKLYGETS-AIKIMKMLVRTRHICPTAPDT 320
Query: 364 LGCYPFTDRDPFLVESCP-HVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVV 422
+GC P+ D DPF++ P +V+ G+ KFE + K + +P FS+T +++
Sbjct: 321 VGCIPYKDEDPFILNEMPDYVFTLGD--KFEKEIGK------ITYFVLPSFSKTKKVIIL 372
Query: 423 NLKNLECHTLS 433
L T++
Sbjct: 373 TLDKCNFETIA 383
>gi|361124771|gb|EHK96842.1| putative DNA polymerase subunit delta-2 [Glarea lozoyensis 74030]
Length = 318
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 118/268 (44%), Gaps = 64/268 (23%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHL------ 62
L R +YI F + KE QQ++ +YF RL +++ + + W
Sbjct: 21 LTRSTTSYI-PHHNFSLAKEKQYQQQFADMYFYRLAILKPAVEKVAGEAWDGFQIGQDVV 79
Query: 63 -PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLE 121
+ VL + +G C IIGT++ M LKP+ILD+ SK+
Sbjct: 80 QKVDNVLGVRQGNLCWIIGTIFMDMPLKPNILDDISKD---------------------- 117
Query: 122 DESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-------- 173
D+SGR++L G L VTG +VA+ G E S GEF V+D+ GL PQ E
Sbjct: 118 DKSGRIRLVGHALENEMLVTGCIVAVMGTENSNGEFEVVDIKVPGLPPQSERWVQVKDED 177
Query: 174 -------PLNSG-----ED------------KYVVLVSGLNVGSGTS-NPLQFQLLVDHI 208
P+ +G ED K + +VSGL S S + L+ LL + +
Sbjct: 178 EEMEDEKPMGNGSKMKDEDEDMEKPAPTSNGKKIAIVSGLGFSSTNSEHALELNLLSEFL 237
Query: 209 TGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
G D Q ++I ++IAGNSI +
Sbjct: 238 LGEALDPVTQENVSQISRLIIAGNSIAV 265
>gi|300122138|emb|CBK22712.2| unnamed protein product [Blastocystis hominis]
Length = 184
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
+ LD LL++ V + ++PGP D + +PQQPL+ L P SA +++ TNP
Sbjct: 33 VSLLDELLSEALPFVSISLIPGPTDAVSSLVPQQPLHPSLLPRSARFSSLERATNPFHAL 92
Query: 318 LDNVRFLGTSGQTIDD-LQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
+ N LGT+GQ I D L++ + L+ M TL+W L PT PNT +P T DPF+
Sbjct: 93 IQNRDVLGTAGQNIQDILRQIAPPLSVLDVMALTLQWGVLFPTTPNTCPGFPLTTHDPFI 152
Query: 377 VESCPHV 383
V + P V
Sbjct: 153 VRTVPDV 159
>gi|401828473|ref|XP_003887950.1| DNA polymerase delta subunit B [Encephalitozoon hellem ATCC 50504]
gi|392998958|gb|AFM98969.1| DNA polymerase delta subunit B [Encephalitozoon hellem ATCC 50504]
Length = 424
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 100/446 (22%), Positives = 185/446 (41%), Gaps = 83/446 (18%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEE---GRECVIIGTLYKHMKLKP 90
Q+++ Y ARL ++ + + ++L+ E+ R+ VI+GTL+ LKP
Sbjct: 11 HQFNRTYDARLTELKPYVMRSARALGVGPVLDSILDAEQEPGDRKSVIVGTLFIVSDLKP 70
Query: 91 SILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL---GGAELLPSAYV--TGIVV 145
+I D+ ++ ++ + LED SGR++L + + +V TG+ +
Sbjct: 71 TIFDKIDRKSKEIKKIEAKTYYSRGMKYFLEDGSGRIELEFPDISRVYQRNFVISTGMCI 130
Query: 146 ALHGKETSAGEFLVLDVLDAGLAPQKELP----LNSGEDKYVVLVSGLNVGSGTSNPLQF 201
+ G G FL D+L P ++LP L+SG K + +SG ++ S + +
Sbjct: 131 GVSGVMAERGRFLAEDILFPFSYP-RDLPVSKSLSSG--KKICFISGPSISSENKSRERM 187
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261
+++D++ + G+ I+ S E+ + +L+ L
Sbjct: 188 MVIIDYL-------RTVGVKEYIMIGGFFDESKEVDKHMLSS-----------------L 223
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
D +L + + D++P D + LP P++ LF N TNP E+DN
Sbjct: 224 DDVLRYVEGRI--DLVPNIKDFGSRVLPLLPIHPKLFTSPVKTN-----TNPCRLEVDNR 276
Query: 322 RFLGTSGQTIDDLQKY--------------------------------SEANDQLEFMER 349
L T+ I+DL KY S + + +
Sbjct: 277 NVLITTRFVIEDLLKYLPQDLGDVQGKSFEYKMHLDMEKIDGAVPRSMSNEGNIVSALAV 336
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG-SDRQLVRLV 408
++ H+ PTAP+T+ PF+ RDPF+V + G+ +F L+G S+
Sbjct: 337 LMKAGHICPTAPDTIQSVPFSGRDPFVVTEQVDYFCVGDTDEF----LEGRSEDGTTLFF 392
Query: 409 CIPKFSETGVAVVVNLKNLECHTLSF 434
IP+F++ VV++++ + F
Sbjct: 393 TIPRFTKRHEVVVLDMETGMLEVVRF 418
>gi|358336103|dbj|GAA54662.1| DNA polymerase delta subunit 2 [Clonorchis sinensis]
Length = 341
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 124/272 (45%), Gaps = 37/272 (13%)
Query: 34 QQYSQIYFARLHLMRALLYSLVP-NW-------KPHLPICTVLELEEGRECVIIGTLYKH 85
+QYS+IY AR + +L + W + LPI ++ L +CVI+GTLYK
Sbjct: 32 RQYSKIYTARFTAAQPVLSAAATRQWAASEHPSRDQLPIRSLNSLVTDEKCVILGTLYKE 91
Query: 86 MKLKPSILDEYSKERSTTPLVK-----PHNFMHPDDHLVLEDESGRVKL---GGAELLPS 137
MKLKPSIL + + V+ + M DD + LED R+++ G + +
Sbjct: 92 MKLKPSILRDLANSEFGQGGVQLQGDTLNTLMSSDDSIFLEDNVQRIRVVMDGLHGVSVT 151
Query: 138 AYVTGIVVALHG--KETSAGEFLVLDVLDAGLAPQK---ELPLNSGEDK---------YV 183
TG+VVAL G E + G F V D+L P+K LP N+ ++
Sbjct: 152 NLATGVVVALLGVEPEHAQGSFHVEDILFLEPQPEKPICSLPANTKRADWTQFRISGPWL 211
Query: 184 VLVSGLNV-GSGTSNP---LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
LVSGL+ G+G + P + QLL D + GD IV ++I G+S+++P
Sbjct: 212 ALVSGLDFNGAGQTRPGHSMALQLLADWLRS-AGDLHPSTDGVGIVRLMILGDSVQLPTS 270
Query: 240 LLNGQNLASKDQSRLFEPIKELDILLTQIAAG 271
Q F ELDI + IA G
Sbjct: 271 ADATTGPTHLTQQCEFN--NELDIDIVHIAQG 300
>gi|387213714|gb|AFJ69168.1| hypothetical protein NGATSA_3043900, partial [Nannochloropsis
gaditana CCMP526]
Length = 83
Score = 84.0 bits (206), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/50 (70%), Positives = 39/50 (78%)
Query: 347 MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL 396
ME+TL WRHLAPTAP+TL CY F D DPF++ S PHVYFAGNQ F RL
Sbjct: 1 MEKTLHWRHLAPTAPDTLACYSFCDDDPFVLPSLPHVYFAGNQPAFAARL 50
>gi|440492470|gb|ELQ75034.1| DNA polymerase delta, regulatory subunit 55 [Trachipleistophora
hominis]
Length = 353
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 173/419 (41%), Gaps = 94/419 (22%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGREC----VIIGTLYKHMKLKP 90
QY+Q Y RL MR+L+ N H + L E I LY K
Sbjct: 10 QYNQTYVTRLEKMRSLI-----NLDVHDDTTILSNLSEASSASGPVAFIALLYVDCANKE 64
Query: 91 SILDE---YSKERSTTPLVKPH-NFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVA 146
+I DE KE++ VKP+ NF + +EDES RV++ +VTG V+
Sbjct: 65 TIFDEAGLIKKEKN----VKPYENFTY-----FVEDESCRVEVIFEP--KDLFVTGQVLG 113
Query: 147 LHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVV-LVSGLNVGSGTSNPLQFQLLV 205
+ + + + + P +L L D ++ ++ L + + S + ++
Sbjct: 114 FIAERNTHSL-----TIKSVIYPV-QLKLTGQLDHDIICFIADLRIRNSMS---ELNVIT 164
Query: 206 DHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILL 265
D+I+ + ++ +VI G+ + E KE LL
Sbjct: 165 DYISN----------SKKVTDLVIIGDIFD--------------------EVTKENADLL 194
Query: 266 TQIAAGVPLD--IMPGPNDPANFSLPQQPL-NR-----CLFPGSATYNTFRSCTNPHCFE 317
Q D I+P NDP N LPQQP+ NR CLF S P FE
Sbjct: 195 AQFLEDFGADAFIIPNINDPTNKLLPQQPISNRIIDYNCLFLPS-----------PALFE 243
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
+ + L I+D++ Y E + + M+ ++ RH+ PTAP+T+GC P+ DPF++
Sbjct: 244 V-GAKMLFIPPVVINDIKLYGEPS-AINIMKMLVKIRHICPTAPDTVGCVPYNGEDPFIL 301
Query: 378 ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNL--KNLECHTLSF 434
P+ F KFE + + V +P FS++ +++ L +N E L +
Sbjct: 302 YEMPNYVFTLG-DKFEKEMGE------VSYFVLPSFSKSKQVILLTLDKRNFETVALEY 353
>gi|322789096|gb|EFZ14530.1| hypothetical protein SINV_13987 [Solenopsis invicta]
Length = 174
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 88/175 (50%), Gaps = 5/175 (2%)
Query: 60 PHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPH-NFMHPDDHL 118
PH+ + + + ++IG LYK KLK S+L + SKE +P N DD L
Sbjct: 3 PHIEVSRLTLESSEKSYILIGVLYKDQKLKSSLLRDLSKELQLEA--QPSSNCASVDDKL 60
Query: 119 VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ-KELPLNS 177
LEDE+ RV+L G + VTG+V A+ G E G F V D G P+ L +S
Sbjct: 61 FLEDETLRVRLVGNHIDVQEIVTGLVCAVLGHELENGNFWVEDWCFPGYYPKPSNLSSSS 120
Query: 178 GEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
ED ++LVSGL++ + T LL ITG G+ Q A I ++IAGN
Sbjct: 121 VEDGKILLVSGLDLVNNTDELSLDLLLE-WITGMAGNASVQKEEAVITRIIIAGN 174
>gi|302757757|ref|XP_002962302.1| hypothetical protein SELMODRAFT_403984 [Selaginella moellendorffii]
gi|300170961|gb|EFJ37562.1| hypothetical protein SELMODRAFT_403984 [Selaginella moellendorffii]
Length = 134
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 39/43 (90%)
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
KDQ RL EP+KELDI+LTQIAA +P+DIMPG NDPANF+LPQQ
Sbjct: 11 KDQVRLTEPVKELDIVLTQIAAAMPVDIMPGANDPANFTLPQQ 53
>gi|242399564|ref|YP_002994989.1| DNA polymerase II, small subunit [Thermococcus sibiricus MM 739]
gi|242265958|gb|ACS90640.1| DNA polymerase II, small subunit [Thermococcus sibiricus MM 739]
Length = 660
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 29/297 (9%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVL--DAGL 167
+ED SG +K+ E++P + VVA G+ + G F + D L
Sbjct: 326 VEDNSGIMKVFIGRDREDYKKAFEIMPDS-----VVAFRGRYSKRGIFFADRIYLPDVPL 380
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+++ PL E Y L+S ++VGS F ++ + GH+ + E+ I + I ++
Sbjct: 381 YKKEKPPLE--EKVYAALISDIHVGSDKFCEKAFMKFIEWLNGHVNSKAEEEIVSRIKYL 438
Query: 228 VIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
+IAG+ ++ G+ GQ L+ D +F+ + L LL+ + + + I PG +D A
Sbjct: 439 IIAGDVVD-GIGIYPGQYNELSIPD---IFDQYEALANLLSNVPDHITMFIGPGNHDAAR 494
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEAND 342
+LPQ R +NP +L FL G+ I+D+ Y +
Sbjct: 495 MALPQPEFYRDYAKPLYELKNAVIISNPAVIDLHGREFLIVHGRGIEDVVSYVPNMSHHQ 554
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
++ M L+ RH+APT + P ++ D ++ES P + G+ + ++ +G
Sbjct: 555 PVKPMVELLKLRHVAPTFGGKVPIAPDSE-DLLVIESVPDLVQMGHVHVLDYQIYRG 610
>gi|219564285|dbj|BAH03711.1| DNA polymerase III (delta) subunit [Saccharomyces pastorianus]
Length = 195
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDES 124
VL+++ + C +G++Y MK KP++LDE + P L K + D ++LEDES
Sbjct: 41 VLDIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDES 100
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP---LNSGEDK 181
GRV L G + + ++TG+VV + G E AG F VLD+ PQ P
Sbjct: 101 GRVLLVGDFIRSTPFITGVVVGILGVEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRG 160
Query: 182 YVVLVSGLNVGSGTSNP-LQFQLLVDHITGHLGDE 215
+ LVSGLN+ + + + L+ ++L + + G + ++
Sbjct: 161 KIALVSGLNLNNTSPDRLLRLEILREFLMGRINNK 195
>gi|375083614|ref|ZP_09730633.1| DNA polymerase II small subunit [Thermococcus litoralis DSM 5473]
gi|374741807|gb|EHR78226.1| DNA polymerase II small subunit [Thermococcus litoralis DSM 5473]
Length = 668
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 19/274 (6%)
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVL--DAGLAPQKELPLNSGEDKYVVLVSGLN 190
E++P + VVA G+ + G F ++ D L +++ PL E Y VL+S ++
Sbjct: 357 EIMPDS-----VVAFKGRYSKRGIFFAENIYLPDVPLYKKEKPPLE--EKVYAVLISDIH 409
Query: 191 VGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLAS 248
VGS F ++ + G++ + E+ I + I +++IAG+ ++ G+ GQ L+
Sbjct: 410 VGSNKFCEKAFMKFLEWLNGNVNTKTEEEIVSRIKYMIIAGDVVD-GIGIYPGQYNELSI 468
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
D +F+ + L LL+ + + + I PG +D A +LPQ R
Sbjct: 469 PD---IFDQYEALANLLSNVPEHITMFIGPGNHDAARTALPQPEFYREYAKPLYDLKNAV 525
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEFMERTLRWRHLAPTAPNTLG 365
+NP +L FL G+ I+D+ Y + ++ M + L+ RHLAPT +
Sbjct: 526 IISNPAVIDLHGREFLIVHGRGIEDVVSYVPNMSHHQPVKPMVQLLKLRHLAPTFGGKVP 585
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
P D ++ES P + G+ + ++ +G
Sbjct: 586 IAP-DPEDLLVIESVPDLVQMGHVHVLDYQIYRG 618
>gi|313236510|emb|CBY11824.1| unnamed protein product [Oikopleura dioica]
Length = 236
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 98/226 (43%), Gaps = 10/226 (4%)
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAG---NSIEIPRGLLNGQNLASKDQSRLFEPIKE 260
+ + TG G+E EQ A+I V I+G E R + + A +R+ K
Sbjct: 1 MSNFFTGIAGEENEQKSKAKISRVQISGLLYKGDEYVRDRKSWKMKAGDQTARM----KL 56
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
D ++ + + +DI G D + +P + LFP +A + P + ++
Sbjct: 57 ADTFISSMCKNISVDIFTGTGDSGSLHVPTAAFHPLLFP-NARQGALKCFPTPVQYNVNG 115
Query: 321 VRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESC 380
L S + +D L +Y + +E M++ L H P AP+ + PF DPF + +
Sbjct: 116 TSILHISNKVMDKLFEYGNFKNTIEAMKKLLICSHSCPIAPDVIPLAPFQTIDPFTIMTA 175
Query: 381 PHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
P + + + ++ G + V L+ +P F + AV+V K+
Sbjct: 176 PDIMWCVGEDFYQEEFKYG--KISVLLIQVPCFKDRKQAVLVKTKS 219
>gi|386874777|ref|ZP_10117003.1| nucleic acid-binding domain protein [Candidatus Nitrosopumilus
salaria BD31]
gi|386807400|gb|EIJ66793.1| nucleic acid-binding domain protein [Candidatus Nitrosopumilus
salaria BD31]
Length = 481
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 40/334 (11%)
Query: 118 LVLEDESGRVK--LGGAELLPSA---YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE 172
LVLED SG + + EL +A + V+A G ++G +++ D++ + Q +
Sbjct: 151 LVLEDPSGSFEGIVFDNELQKTAGTLLIDQFVMARVGLANNSG-YIIKDLILPDIPEQAK 209
Query: 173 LPLNSGE-DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
N E + Y V +S L++GS +F V I+ A +I V+I G
Sbjct: 210 ---NKSETEAYAVFLSDLHIGSKYFMEEEFAEFVSWISS------PDPTARKIRFVLIGG 260
Query: 232 NSIEIPRGLLNGQN-----LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANF 286
+ ++ G+ QN L ++Q +K+++ L+ +I V + IMPG +DP
Sbjct: 261 DVVD-GVGIYPNQNKELVCLTIQEQ------LKKVEDLIDKIPKNVKIIIMPGNHDPGRR 313
Query: 287 SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA---NDQ 343
+LPQ + + G NP L+ VR + GQ+IDD+ K + +
Sbjct: 314 ALPQPAIPKKYNSGLWDRENVIMVGNPAVVSLNGVRVMMFHGQSIDDIVKTTPGLSYDKP 373
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG---- 399
M+ LR RHL+P + P + D ++E P ++ G+ + E + KG
Sbjct: 374 TNVMKHLLRARHLSPIYGSQTPIAPEME-DLLVIEDIPDIFHVGHVHRAELDMYKGILLI 432
Query: 400 ----SDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
+Q + G+A++VNLK +
Sbjct: 433 NSGSWQKQTPFQASVGMTPNPGIAIMVNLKTFQV 466
>gi|123448441|ref|XP_001312951.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121894816|gb|EAY00022.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 362
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 134/316 (42%), Gaps = 46/316 (14%)
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
+ LED SGRV+L G P A + I V G T G L D + K L N
Sbjct: 71 QIYLEDSSGRVRLIGDFPFPIA--SNICVGTTGVLTLEGNLL----FDKIMLMPKLLISN 124
Query: 177 S--GEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG--N 232
S + LVS L +GS F L + G++ + + + + ++I +
Sbjct: 125 SIVHPQVKIALVSNLCLGSK-----NFDL-------NSGNKLIEFLKSCDLCIIIGSIMD 172
Query: 233 SIEIPRGLLNGQNLASKDQSRLFEP--IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
S + P N +N K+ L +P I+ +I L +PG DP +P
Sbjct: 173 SNDFPE-FANAEN-DWKEWVELIDPSLIENFHSFFGEIDTRCIL--IPGFGDPTESVIPI 228
Query: 291 QPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMER- 349
QP N P + TNP +D ++ LG +G ID + DQL F ER
Sbjct: 229 QPFN----PAFISPLNMECTTNPGLINIDGMKLLGMTGNIIDKIDC-----DQLSFHERQ 279
Query: 350 --TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRL 407
L WR++AP++P + C ++D ++ P V+ AG Q E + +D LV
Sbjct: 280 KMILSWRYIAPSSPTRIPC-EVCEKDILSLDFMPQVFVAGGSQNLEYSM---ADDTLV-- 333
Query: 408 VCIPKFSETGVAVVVN 423
+ IP + + A ++N
Sbjct: 334 ISIPDYITSHSAALLN 349
>gi|340345786|ref|ZP_08668918.1| DNA-directed DNA polymerase [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520927|gb|EGP94650.1| DNA-directed DNA polymerase [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 484
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 48/347 (13%)
Query: 118 LVLEDESG---------RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLA 168
LVLED SG ++ LL ++ +A G +AG F++ D++ +
Sbjct: 153 LVLEDPSGLFEGIVFDNELQKTAGSLLNDQFI----MARIGFGKNAG-FIIKDLISPDVP 207
Query: 169 PQKELPLNSGE-DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
Q N E + Y V +S L++GS +F V ++ +A +I V
Sbjct: 208 DQTS---NRSETETYAVFLSDLHIGSKYFMEEEFTEFVSWLSS------PDSVARKIRFV 258
Query: 228 VIAGNSIEIPRGLLNGQNLASKDQSRLF-----EPIKELDILLTQIAAGVPLDIMPGPND 282
+I G+ L++G + L E +K+++ L+++I + + + IMPG +D
Sbjct: 259 LIGGD-------LVDGVGIYPNQDKELVCQTIEEQLKKVEELISKIPSYIKIFIMPGNHD 311
Query: 283 PANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA-- 340
P +LPQ + + G NP L+ V+ + GQ+IDD+ K +
Sbjct: 312 PGRRALPQPAIPKKYNSGLWERENVFMVGNPAVVSLNGVKVMMFHGQSIDDIVKTTPGLS 371
Query: 341 -NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
+ + M+ LR RHL+P + P + D +++ P ++ G+ + E + KG
Sbjct: 372 YDKPTKVMKHLLRARHLSPIYGSQTPIAPEME-DLMVIDDIPDIFHVGHVHRAELDMYKG 430
Query: 400 --------SDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
+Q + G+A++VNLK + + ++ +
Sbjct: 431 ILLLNSGSWQKQTPFQASVGMTPNPGIALMVNLKTFKVYHENYNSNI 477
>gi|408381088|ref|ZP_11178638.1| DNA polymerase II small subunit [Methanobacterium formicicum DSM
3637]
gi|407816353|gb|EKF86915.1| DNA polymerase II small subunit [Methanobacterium formicicum DSM
3637]
Length = 488
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 161/395 (40%), Gaps = 51/395 (12%)
Query: 21 DEPFEIQKETYRG-------QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEG 73
D F+I K+ R + S + +R H +R LL + K PI L++
Sbjct: 87 DFDFQILKDASRKSYTNGEIKDLSSYFKSRYHKLRELL-TYKRELKDSYPIKEATSLDDV 145
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+ V + + ++ K +++ + S T L+ H ++H V + AE
Sbjct: 146 VKIVGMVSDIRYTKNNHKLIEIEDETGSATVLI------HNENHEVFQQ---------AE 190
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ V GI+ + G A E ++ G+ E P+ D V +S +++GS
Sbjct: 191 KVVKDEVIGIIGSRKGTLIMASE-----LISPGVPRIDEKPM----DFATVFLSDIHIGS 241
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQ 251
T +F+ + I G GDE+++ IA + +VV+AG+ ++ G+ Q+ L KD
Sbjct: 242 STFLNDEFERFIHWINGDFGDEEQREIANNVKYVVVAGDIVD-GIGVYPHQDKELTIKDI 300
Query: 252 SRLFEPIKEL--DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
+ +E L DI + V + I PG +D + + PQ + G
Sbjct: 301 HQQYEEAARLFGDI------SHVKVIIAPGNHDASRLAEPQPAIPEDYAKGLYDLKNLEF 354
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE---FMERTLRWRHLAPTAPNTLGC 366
+NP LD ++ L G++ DD+ + + M+ L RHLAP
Sbjct: 355 VSNPALVSLDGIKVLIYHGRSFDDMAMTVKGMSHQQSDLIMKELLEKRHLAPIYGERT-- 412
Query: 367 YPFTD--RDPFLVESCPHVYFAGNQQKFETRLLKG 399
P D ++E P V+ G+ R KG
Sbjct: 413 -PLASEIEDHLVIEEIPDVFHTGHVHINSYRRYKG 446
>gi|15679404|ref|NP_276521.1| DNA polymerase II small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|13431445|sp|O27456.1|DP2S_METTH RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|2622517|gb|AAB85882.1| DNA polymerase delta small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 482
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 46/360 (12%)
Query: 40 YF-ARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECV-IIGTL--YKHMKLKPSILDE 95
YF +R ++ LL S P K H+PI +L G + V IIG + ++ K I+ E
Sbjct: 105 YFNSRYSSLKNLL-SKRPELKGHIPIA---DLRGGEDVVSIIGMVNDVRNTKNNHRII-E 159
Query: 96 YSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAG 155
+ +V +H ++H + E V+ VV +HG T G
Sbjct: 160 LEDDTGEISVV-----VHNENHKLFEKSEKIVR-------------DEVVGVHG--TKKG 199
Query: 156 EFLVL-DVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGD 214
F+V ++ G+ +E + D V +S +++GS T F V I G G
Sbjct: 200 RFVVASEIFHPGVPRIQEKEM----DFSVAFISDVHIGSQTFLEDAFMKFVKWINGDFGS 255
Query: 215 EKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGV 272
E+++ +AA++ ++V+AG+ ++ G+ GQ L +D + E +E L I + +
Sbjct: 256 EEQRSLAADVKYLVVAGDIVD-GIGIYPGQEKELLIRD---IHEQYEEAARLFGDIRSDI 311
Query: 273 PLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTID 332
+ ++PG +D + + PQ + + +NP LD VR L G++ D
Sbjct: 312 KIVMIPGNHDSSRIAEPQPAIPEEYAKSLYSIRNIEFLSNPSLVSLDGVRTLIYHGRSFD 371
Query: 333 DL----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
D+ S L ME L RHLAP + D +++ PHV G+
Sbjct: 372 DMAMSVNGLSHERSDL-IMEELLEKRHLAPIYGERTPLASEIE-DHLVIDEVPHVLHTGH 429
>gi|390961222|ref|YP_006425056.1| DNA polymerase II small subunit [Thermococcus sp. CL1]
gi|390519530|gb|AFL95262.1| DNA polymerase II small subunit [Thermococcus sp. CL1]
Length = 718
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 30/271 (11%)
Query: 144 VVALHGKETSAGEFLVLDVL--DAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQF 201
VVA G+ + G F + D +++ PL E Y +L+S ++VGS F
Sbjct: 412 VVAFRGRYSRRGLFFADKIFLPDVPKFKREKPPLE--EKVYAILLSDIHVGSNKFCEKAF 469
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIK 259
+ ++ + G + + KE+ + + I +++IAG+ ++ G+ GQ LA D +F+ +
Sbjct: 470 ERFLEWLNGEVNNRKEEELVSRIKYMIIAGDVVD-GIGIYPGQYNELAIPD---IFDQYE 525
Query: 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQ--------QPLNRCLFPGSATYNTFRSCT 311
L LL + + I PG +D A +LPQ +PL R +
Sbjct: 526 ALTNLLRNVPDHITTFIGPGNHDAARTALPQPGFYDEYARPLKRL--------KNAVIIS 577
Query: 312 NPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
NP L FL G+ I+D+ + E M L+ RHLAPT + P
Sbjct: 578 NPAVIRLHGRDFLIAHGRGIEDVVTALPNRSHHRPAEAMLDLLKLRHLAPTFGEKVPIAP 637
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
D ++ES P ++ AG+ E R+ G
Sbjct: 638 -DPEDTLVIESVPDLFQAGHVHVMEYRIYNG 667
>gi|407463389|ref|YP_006774706.1| DNA polymerase II small subunit [Candidatus Nitrosopumilus
koreensis AR1]
gi|407047011|gb|AFS81764.1| DNA polymerase II small subunit [Candidatus Nitrosopumilus
koreensis AR1]
Length = 481
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 20/273 (7%)
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
S + Y V +S L++GS +F V I+ +A +I V+I G+ ++
Sbjct: 212 SESEAYAVFLSDLHIGSKYFMEEEFTDFVSWISS------PDPVARKIRFVLICGDVVD- 264
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
G+ QN Q+ + E +K+++ L+ I + + IMPG +DP +LPQ + +
Sbjct: 265 GVGIYPNQNKELVCQT-IEEQLKKVEGLIENIPKNIKIVIMPGNHDPGRRALPQPAIPKK 323
Query: 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA---NDQLEFMERTLRW 353
G NP L+ V+ + GQ+IDD+ K + + M+ LR
Sbjct: 324 YNSGLWDRENVIMVGNPAVVSLNGVKVMMFHGQSIDDIVKTTPGLSYDKPTNVMKHLLRA 383
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG--------SDRQLV 405
RHL+P + P +D ++E P ++ G+ K + + KG +Q
Sbjct: 384 RHLSPIYGSQTPIAPEM-QDLMVIEDIPDIFHVGHVHKAQLDMYKGILLVNSGSWQKQTP 442
Query: 406 RLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
+ G+A++VNLK + ++ +
Sbjct: 443 FQASVGMTPNPGIALLVNLKTFQVFHQNYNSNL 475
>gi|407465777|ref|YP_006776659.1| DNA polymerase II small subunit [Candidatus Nitrosopumilus sp. AR2]
gi|407048965|gb|AFS83717.1| DNA polymerase II small subunit [Candidatus Nitrosopumilus sp. AR2]
Length = 481
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 146/337 (43%), Gaps = 28/337 (8%)
Query: 118 LVLEDESGRVK--LGGAELLPSA---YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE 172
+VLED SG + + EL +A + V+A G ++G +++ D++ + Q +
Sbjct: 151 IVLEDPSGSFEGIIFDEELQKTAGTLLLDQFVMARIGSAKNSG-YIIKDLILPDIPEQAK 209
Query: 173 LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
S + Y V +S L+VGS +F V I+ +A +I V+I G+
Sbjct: 210 N--KSESEAYAVFLSDLHVGSKYFMEEEFSDFVSWISS------PDPVAKKIRFVLIGGD 261
Query: 233 SIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
++ G+ QN Q+ + E +K+ + L+ +I V + IMPG +DP +LPQ
Sbjct: 262 VVD-GVGIYPNQNKELVCQT-IQEQLKKAEDLIDKIPKNVKIIIMPGNHDPGRRALPQPA 319
Query: 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA---NDQLEFMER 349
+ G NP L+ V+ GQ+IDD+ K + + + M
Sbjct: 320 IPEKYNSGLWERENVFMVGNPAVVSLNGVKVSMFHGQSIDDIVKTTPGLSYDRPTDVMRH 379
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG--------SD 401
LR RHL+P + P + D +++ P ++ G+ + + + KG
Sbjct: 380 LLRARHLSPIYGSQTPIAPEME-DLMVIQDIPDIFHVGHVHRAQLDMYKGILLINSGSWQ 438
Query: 402 RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
+Q + G+A++VNLK + ++ +
Sbjct: 439 KQTPFQASVGMTPNPGIAILVNLKTFQVFHQNYSSNL 475
>gi|315231635|ref|YP_004072071.1| Archaeal DNA polymerase II small subunit [Thermococcus barophilus
MP]
gi|315184663|gb|ADT84848.1| Archaeal DNA polymerase II small subunit [Thermococcus barophilus
MP]
Length = 677
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 128/297 (43%), Gaps = 29/297 (9%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAGEFLV--LDVLDAGL 167
+ED +G VK+ E+LP + VVA G + G L + D L
Sbjct: 344 VEDMTGIVKVFLGRDNEDYKKAFEVLPDS-----VVAFRGYYSKRGILFASKLYLPDVPL 398
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+++ PL E Y VL+S ++VGS F ++ + G++ +E+ I + I ++
Sbjct: 399 YKREKPPLE--EKVYAVLISDIHVGSTKFCEKAFMKFLEWLNGNVESREEEEIVSRIKYM 456
Query: 228 VIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
+IAG+ ++ G+ GQ LA D +F+ + L LL + + + I PG +D A
Sbjct: 457 IIAGDVVD-GIGIYPGQYNELAIPD---IFDQYEALANLLANVPDHITMFIGPGNHDAAR 512
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQL- 344
+LPQ R +NP L FL G+ I+D+ Y L
Sbjct: 513 TALPQPEFYREYAKPLYELKNAVIISNPAVINLHGRDFLIVHGRGIEDVVSYIPGKSHLH 572
Query: 345 --EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
E M L+ RH+APT + P D ++E P + G+ + ++ +G
Sbjct: 573 PVEPMIELLKLRHVAPTFGGKVPIAP-DPEDLLVIEEVPDLVQMGHVHVLDYQIYRG 628
>gi|161527514|ref|YP_001581340.1| DNA polymerase II small subunit [Nitrosopumilus maritimus SCM1]
gi|160338815|gb|ABX11902.1| DNA-directed DNA polymerase [Nitrosopumilus maritimus SCM1]
Length = 481
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 144/337 (42%), Gaps = 28/337 (8%)
Query: 118 LVLEDESGRVK--LGGAELLPSA---YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE 172
LVLED SG + + EL +A V V+A ++G F++ D++ + Q
Sbjct: 151 LVLEDPSGSFEGIIFDTELQKTADTLLVDQFVMARVSVGKNSG-FIIKDLIFPDIPDQAT 209
Query: 173 LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
S + Y V +S L++GS + I+ A +I ++I G+
Sbjct: 210 N--KSESEAYAVFLSDLHIGSKYFMEEELTEFFSWISS------PDPTAKKIRFILIGGD 261
Query: 233 SIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP 292
++ G+ QN Q+ + E +K+++ L+ QI + + IMPG +DP +LPQ
Sbjct: 262 MVD-GVGIYPNQNKELVCQT-IEEQLKKVESLIDQIPKNIKIIIMPGNHDPGRRALPQPA 319
Query: 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA---NDQLEFMER 349
+ + G NP L+ V+ + GQ+IDD+ K + + M+
Sbjct: 320 IPKKYNSGLWDRENVIMVGNPAVVSLNGVKVMMFHGQSIDDIVKTTPGLSYDKPTNVMKH 379
Query: 350 TLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG--------SD 401
LR RHL+P + P +D ++E P ++ G+ K + + KG
Sbjct: 380 LLRARHLSPIYGSQTPIAPEM-QDLMVIEDIPDIFHVGHVHKAQLDMYKGILLVNSGSWQ 438
Query: 402 RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 438
+Q + G+A++VNLK + ++ +
Sbjct: 439 KQTPFQASVGMTPNPGIALLVNLKTFQVFHQNYNSNL 475
>gi|332158294|ref|YP_004423573.1| DNA polymerase II small subunit [Pyrococcus sp. NA2]
gi|331033757|gb|AEC51569.1| DNA polymerase II small subunit [Pyrococcus sp. NA2]
Length = 618
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 165/386 (42%), Gaps = 60/386 (15%)
Query: 34 QQYSQIYFARLHLMRALLY--SLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPS 91
+ Y+ ++ +RL +R +L S + N + I + + EG E VIIG + ++
Sbjct: 225 EAYTSLFRSRLAKIRKILRENSEISNV---VDIGKLKYVREGEEVVIIGLVNSKREVSRG 281
Query: 92 ILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL----------GGAELLPSAYVT 141
++ E +ED++GR+K+ ++LP A
Sbjct: 282 LIFE------------------------IEDQTGRIKVFLSKESEDYREAFKVLPDA--- 314
Query: 142 GIVVALHGKETSAGEFLV--LDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPL 199
VVA G + G F + D L +++ PL E Y VL+S ++VGS
Sbjct: 315 --VVAFKGVPSKKGIFFANRFYLPDVPLYRKQKPPLE--EKVYAVLISDIHVGSKEFCEK 370
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEP 257
F ++ + G++ ++E+ I + I +++IAG+ ++ G+ GQ +L D +F+
Sbjct: 371 AFLKFLEWLNGYVESKEEEEIVSRIKYMIIAGDLVD-GIGVYPGQYSDLVIPD---IFDQ 426
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
+ L LL + + + I PG +D A ++PQ + +NP
Sbjct: 427 YEALANLLANVPDHITMFIGPGNHDAARPAIPQPEFYKEYAKPLYKLKNAIIISNPAVIR 486
Query: 318 LDNVRFLGTSGQTIDDLQKY----SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
L FL G+ I+D+ + + L +E L+ RHLAPT + P D
Sbjct: 487 LHGRDFLIAHGRGIEDVVSFVPGLTHHKPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPED 544
Query: 374 PFLVESCPHVYFAGNQQKFETRLLKG 399
++E P + G+ +++ + +G
Sbjct: 545 LLVIEEVPDLVHMGHVHVYDSVIYRG 570
>gi|298673983|ref|YP_003725733.1| DNA-directed DNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298286971|gb|ADI72937.1| DNA-directed DNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 525
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 125/288 (43%), Gaps = 37/288 (12%)
Query: 120 LEDESGR----VKLGGAELLPSA--YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL 173
+ED +G V+ EL A +V VV + G T+ + L+ P
Sbjct: 199 IEDNTGSLSVLVRTADKELFEQANSFVLDEVVGVTGMLTNDKKLLIASKFTLPDLPNTNF 258
Query: 174 PLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
N G V +S ++VGS T ++ +D + G++ D+K Q I+ +I +VV++G+
Sbjct: 259 -TNKGSHGKAVFISDVHVGSSTFLEDEWLRFIDFLNGYIDDKKMQDISNDIRYVVVSGDL 317
Query: 234 IEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
++ G+ GQ+ L+ D ++E ++ QI + + I PG +D + PQ
Sbjct: 318 VD-GIGIYPGQDKELSIPD---VYEQYRKAAEYFKQIPEHITVIIGPGNHDAVRQAEPQP 373
Query: 292 PLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL---------QKYSE 339
+ FP + T+ NP +LD V+ L G++IDD QK +
Sbjct: 374 CFGEELKSYFPKNVTF-----VGNPAMVDLDGVKVLMYHGRSIDDFVASVPHVSYQKPTT 428
Query: 340 ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG 387
A M +++RHL+P + P D F++ P + G
Sbjct: 429 A------MVEMMKFRHLSPIYGGRVSIAP-EKHDHFVINQIPDILHCG 469
>gi|212224794|ref|YP_002308030.1| DNA polymerase II small subunit [Thermococcus onnurineus NA1]
gi|212009751|gb|ACJ17133.1| DNA polymerase II, small subunit [Thermococcus onnurineus NA1]
Length = 701
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 122/274 (44%), Gaps = 19/274 (6%)
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVL--DAGLAPQKELPLNSGEDKYVVLVSGLN 190
E++P A VVA G+ + G F + D +++ PL E Y VL+S ++
Sbjct: 389 EIMPDA-----VVAFKGRYSGRGIFFADKIYLPDVPKFKREKPPLE--EKVYAVLLSDVH 441
Query: 191 VGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLAS 248
VGS F ++ + G + + E+ + + I +++IAG+ ++ G+ GQ LA
Sbjct: 442 VGSNKFCEKAFMRFLEWLNGDVNNRAEEELVSRIKYMIIAGDVVD-GIGIYPGQYNELAI 500
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
D +F+ + L LL+ + + + I PG +D A +LPQ
Sbjct: 501 PD---IFDQYEALANLLSNVPDHITMFIGPGNHDAARTALPQPGFYEEYARPLLKLKNAV 557
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEFMERTLRWRHLAPTAPNTLG 365
+NP +L FL G+ I+D+ + + E M L+ RHLAPT +
Sbjct: 558 IISNPAVVKLHGRDFLIAHGRGIEDVVSFIPNRTHHRPAEAMLDLLKLRHLAPTFGEKVP 617
Query: 366 CYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
P D ++ES P ++ AG+ + ++ G
Sbjct: 618 IAP-DPEDTLVIESVPDLFQAGHVHVMQYKIYNG 650
>gi|57641837|ref|YP_184315.1| DNA polymerase II small subunit [Thermococcus kodakarensis KOD1]
gi|57160161|dbj|BAD86091.1| DNA polymerase II, small subunit [Thermococcus kodakarensis KOD1]
Length = 735
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 147/381 (38%), Gaps = 51/381 (13%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
Q YS + +RL MR + RE IGT+ KL
Sbjct: 340 QAYSSYFKSRLKKMRRIF----------------------RENPEIGTIVDIAKLS---- 373
Query: 94 DEYSKERSTT--PLVKPHNFMHPDDHLVLEDESGRVKL------GGAELLPSAYVTGIVV 145
Y +E T LV +ED +GR+K+ GA S + VV
Sbjct: 374 --YVREDDVTIIGLVNEKRETRKGYLFEIEDATGRIKVFIGSDKEGANEAYSTIMPDSVV 431
Query: 146 ALHGKETSAGEFLVLDVL--DAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
A G G F V D + + PL E Y +L+S ++VGS F
Sbjct: 432 AFRGT-PGKGIFFANRVFLPDVPKFKRSKPPLE--EKVYAILLSDIHVGSNKFCEEAFIK 488
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKEL 261
++ + G + E+ + + I +++I G+ ++ G+ GQ LA D +F+ + L
Sbjct: 489 FLEWLNGEVNSRTEEELVSRIKYIIIGGDVVD-GVGIYPGQYNELAIPD---IFDQYEAL 544
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
LL Q+ + + I PG +D A +LPQ +NP L
Sbjct: 545 ANLLKQVPDHITMFIGPGNHDAARTALPQPGFYEEYAKPLYKLKNAVIISNPAVIRLHGR 604
Query: 322 RFLGTSGQTIDDLQKYSEANDQ---LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
FL G+ I+D+ + E M L+ RH+APT N + P D ++E
Sbjct: 605 DFLVAHGRGIEDVVDFVPNRSHHRPAEAMVELLKLRHIAPTFGNKVPIAP-DPEDTLVIE 663
Query: 379 SCPHVYFAGNQQKFETRLLKG 399
S P ++ AG+ + + G
Sbjct: 664 SVPDLFQAGHVHVMQYKTYNG 684
>gi|315425095|dbj|BAJ46767.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315428039|dbj|BAJ49627.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 492
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 131/319 (41%), Gaps = 38/319 (11%)
Query: 140 VTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPL 199
+T VVA+ K G ++ +++ + Q+ E+ Y+ L+S ++VGS
Sbjct: 190 LTDTVVAMRIKRV-GGINILTEIIHPDIDEQQFRRTPQTEEAYICLISDIHVGSKHFRRD 248
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKD--QSRLFEP 257
F+ +D + + G+ + H+VI G+ +E G+ GQ KD + E
Sbjct: 249 YFESFLDWL-----NRGRDGVVKRLTHLVIGGDLVE-GVGIYPGQE---KDLMYRNVEEQ 299
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
++E LL +I + + +PG ++P +LPQ PL Y +NP
Sbjct: 300 LREAGKLLAEIPPNIEIVFIPGNHEPVRKALPQPPLQDRYRKLLDEYRRMIHLSNPAELV 359
Query: 318 LDNVRFLGTSGQTIDDL------QKYSE-ANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
D R GQ +DD+ YS + E + LR+RHLAP ++ P +
Sbjct: 360 FDGRRVTVYHGQGLDDIIQSLPTTSYSTLPENAAEVVTALLRYRHLAPIYGGSVQLLP-S 418
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS-------------ETG 417
D ++ PH+ G+ +L + + V+LV + + G
Sbjct: 419 KEDRLVIVDQPHLLQTGH-----IHVLVNTSYRGVKLVNAAAWQDQTDFQRSLGLEPDVG 473
Query: 418 VAVVVNLKNLECHTLSFGT 436
A V+NL ++ F +
Sbjct: 474 YAAVLNLASMNVEMKPFAS 492
>gi|341582523|ref|YP_004763015.1| DNA polymerase II small subunit [Thermococcus sp. 4557]
gi|340810181|gb|AEK73338.1| DNA polymerase II small subunit [Thermococcus sp. 4557]
Length = 715
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 12/262 (4%)
Query: 144 VVALHGKETSAGEFLVLDVL--DAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQF 201
VVA G+ + G F + D + + PL E Y +L+S ++VGS F
Sbjct: 409 VVAFRGRYSGRGIFFANRIYLPDVPKFKRDKPPLE--EKVYAILLSDIHVGSNKFCEKAF 466
Query: 202 QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261
+ ++ + G + + E+ + + I +++IAG+ ++ G+ GQ + +F+ + L
Sbjct: 467 ERFLEWLNGEVNNRAEEELVSRIKYMIIAGDVVD-GIGIYPGQ-YNELEIPDIFDQYEAL 524
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPL-NRCLFPGSATYNTFRSCTNPHCFELDN 320
LL + + + I PG +D A +LPQ + P N +NP L
Sbjct: 525 ANLLRNVPDHITMFIGPGNHDAARTALPQPGFYDEYARPLKKLKNAVM-ISNPAVVRLHG 583
Query: 321 VRFLGTSGQTIDDLQKY---SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
FL G+ I+D+ + + E M L+ RHLAPT + P ++ D ++
Sbjct: 584 RDFLIAHGRGIEDVVSFIPNRSHHRPAEAMLDLLKLRHLAPTFGEKVPVAPDSE-DTLVI 642
Query: 378 ESCPHVYFAGNQQKFETRLLKG 399
ES P ++ AG+ E ++ G
Sbjct: 643 ESVPDLFQAGHVHVMEYKMYNG 664
>gi|262348218|gb|ACY56327.1| putative DNA polymerase delta subunit 2, partial [Monascus ruber]
Length = 184
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ------ 170
+ LEDESGR++L G L + VTG ++A+ G E ++G+F V+D+ L Q
Sbjct: 22 QVTLEDESGRLRLTGPLLSTTQLVTGAIIAVLGTENASGDFEVIDIKVPDLPRQPARWER 81
Query: 171 ---KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG-----DEKEQGIAA 222
K++ + + K + VSGL + + + L +LL D++ G+ G DE A+
Sbjct: 82 DGDKDIDKDRSKGK-IAFVSGLGIAGSSGDTLALELLTDYLLGYTGPSATDDEALPPNAS 140
Query: 223 EIVHVVIAGNSI 234
+I ++IAGNS+
Sbjct: 141 KITRLIIAGNSL 152
>gi|118577011|ref|YP_876754.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Cenarchaeum symbiosum A]
gi|118195532|gb|ABK78450.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Cenarchaeum symbiosum A]
Length = 476
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 133/322 (41%), Gaps = 25/322 (7%)
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVV 184
G ++ LL +V VVA G A E ++ DV +G P + S + Y V
Sbjct: 168 GDLRKAADMLLNDQFVMAKVVAGRGGGLVARELIMPDVPGSGSEPNR-----SESEVYAV 222
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ 244
+S L++GS F V ++G +A + +++I G+ ++ G+ Q
Sbjct: 223 FLSDLHIGSKYFLEGAFAEFVSWLSGI------DPVARRVRYMIIGGDLVD-GVGIFPNQ 275
Query: 245 NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATY 304
+ Q+ + E +++ D +L + V + I PG +DP +LPQ + + G
Sbjct: 276 DKELAYQT-IGEQLQKADEMLAGVPDHVQIFITPGNHDPGRRALPQPAIPKKYHAGLWER 334
Query: 305 NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA---NDQLEFMERTLRWRHLAPTAP 361
NP L+ V+ GQ+IDD+ K + + ++ M L+ RH +P
Sbjct: 335 GNVEMLGNPAMISLNGVKVGIFHGQSIDDIVKTTPGLSYDRPVDVMRHLLKVRHYSPIFG 394
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS--------DRQLVRLVCIPKF 413
+ P T+ D +++ P ++ G+ E +G Q I +
Sbjct: 395 SQTPIAPETE-DMMVIDEVPDIFHMGHVHVTELGSYRGVLLVNAGTWQGQTPFQSSIGQT 453
Query: 414 SETGVAVVVNLKNLECHTLSFG 435
AV+VNLK + + FG
Sbjct: 454 PTPARAVLVNLKTFKVYYKDFG 475
>gi|435850245|ref|YP_007311831.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Methanomethylovorans hollandica DSM 15978]
gi|433660875|gb|AGB48301.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Methanomethylovorans hollandica DSM 15978]
Length = 517
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 31/286 (10%)
Query: 120 LEDESGRV----KLGGAEL--LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL 173
LED +G + ++ EL L S +V VV + G T+ G+ L+ A +L
Sbjct: 190 LEDTTGSISVLIRMADKELFELASCFVLDEVVGITGALTNDGKLLI-----AKKITIPDL 244
Query: 174 PLNSGEDKY----VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
P GE K VL S ++VGS T ++ +D + G +E ++ E+ ++V+
Sbjct: 245 PNTLGERKRSYGKAVLTSDVHVGSSTFLEEEWYRFIDFLKGDTDNEVMAELSTEVRYLVV 304
Query: 230 AGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
AG+ ++ G+ GQ + + ++E K+ ++I + + I PG +D + P
Sbjct: 305 AGDLVD-GVGIYPGQEM-ELNIPDVYEQYKKTAEYFSEIPKHIKVIISPGNHDAVRQAEP 362
Query: 290 QQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSEANDQ 343
Q L + + F NP +LD V+ + G++IDDL Y E
Sbjct: 363 QPMLPENIRADFSENVLF--VGNPSVVDLDGVKLMIYHGRSIDDLVASIPGVSYQEPTKA 420
Query: 344 L-EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+ E M+R RHL+P + + P +D F++ P + G+
Sbjct: 421 MVEMMKR----RHLSPIYGSRVSIAP-EKQDHFVISQVPDILHCGH 461
>gi|11499379|ref|NP_070618.1| DNA polymerase II small subunit [Archaeoglobus fulgidus DSM 4304]
gi|13431447|sp|O28484.1|DP2S_ARCFU RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|2648756|gb|AAB89458.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 488
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 35/273 (12%)
Query: 140 VTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPL 199
V G+ L G A + DV G +K D Y+V +S + GS
Sbjct: 193 VIGVTGLLKGSSLYANRIVFPDVPINGNGEKKR-------DFYIVFLSDTHFGSKEFLEK 245
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFE- 256
++++ V + G +G +K Q +A ++ ++VIAG+ ++ G+ GQ +LA D +E
Sbjct: 246 EWEMFVRWLKGEVGGKKSQNLAEKVKYIVIAGDIVD-GIGVYPGQEDDLAISDIYGQYEF 304
Query: 257 PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN---RCLFPGSATYNTFRSCTNP 313
LD +I + + + PG +D + PQ R LFP + + NP
Sbjct: 305 AASHLD----EIPKEIKIIVSPGNHDAVRQAEPQPAFEGEIRSLFPKNVEH-----VGNP 355
Query: 314 HCFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+++ V+ L G++IDD+ Y E + ME L+ RHL+P
Sbjct: 356 AYVDIEGVKVLIYHGRSIDDIISKIPRLSYDEPQ---KVMEELLKRRHLSPIYGGRTPLA 412
Query: 368 PFTDRDPFLV-ESCPHVYFAGNQQKFETRLLKG 399
P +R+ +LV E P + G+ + T +G
Sbjct: 413 P--EREDYLVIEDVPDILHCGHIHTYGTGFYRG 443
>gi|329766187|ref|ZP_08257746.1| DNA polymerase II small subunit [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137458|gb|EGG41735.1| DNA polymerase II small subunit [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 481
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 117/276 (42%), Gaps = 30/276 (10%)
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
S + Y V +S L++GS +F V ++ IA +I V+I G+
Sbjct: 213 SETETYAVFLSDLHIGSKYFMEEEFTEFVSWLSS------PDPIARKIRFVLIGGD---- 262
Query: 237 PRGLLNGQNLASKDQSRLF-----EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
L++G + L E +K+++ L+ ++ + + IMPG +DP +LPQ
Sbjct: 263 ---LVDGVGIYPNQDKELVCQTIEEQLKKVEELIDRVPNYIKIFIMPGNHDPGRRALPQP 319
Query: 292 PLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA---NDQLEFME 348
+ + G NP L+ V+ + GQ+IDD+ K + + M+
Sbjct: 320 AIPKKYNSGLWERENVFMVGNPAVVSLNGVKVMMFHGQSIDDIVKTTPGLSYDKPTNVMK 379
Query: 349 RTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG--------S 400
LR RHL+P + P + D +++ P ++ G+ + E + KG
Sbjct: 380 HLLRARHLSPIYGSQTPIAPEIE-DLMVIDEIPDIFHVGHVHRAELDMYKGILLINSGSW 438
Query: 401 DRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436
+Q + G+A++VNLK + + ++ +
Sbjct: 439 QKQTPFQASVGMTPNPGIALMVNLKTFKVYHENYNS 474
>gi|147920452|ref|YP_685757.1| DNA polymerase II small subunit [Methanocella arvoryzae MRE50]
gi|110621153|emb|CAJ36431.1| DNA-directed DNA polymerase D, small subunit [Methanocella
arvoryzae MRE50]
Length = 519
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 125/285 (43%), Gaps = 30/285 (10%)
Query: 120 LEDESGRVK---LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
LED +G + + +++ S + V+ + G+ + G L+ L P +P
Sbjct: 193 LEDPTGSINVLIMKDSDIFESPLILDEVIGVSGQLSGDGGLLIAKSLVYPDVPYTNIPRR 252
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
S E L+S ++VGS T + +D + G +++ + + + ++++AG+
Sbjct: 253 SSEPSIAALISDVHVGSDTFLEDDWMKFLDWVNGDCPTDRDADLVSRLKYIIVAGD---- 308
Query: 237 PRGLLNGQNLASKDQSRL-----FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
L++G + + L ++ ++ + I + + I PG +D + PQ
Sbjct: 309 ---LVDGIGIYPGQEKELHILDVYDQYRKAAEYFSMIPKHIQIVISPGNHDAVRQAEPQP 365
Query: 292 PLNR----CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK----YSEANDQ 343
L+R G+ T+ NP E++ VR + G++IDDL S + +
Sbjct: 366 ALSREVQDMFKQGNVTF-----VGNPSAVEIEGVRVMIYHGRSIDDLVSNLPGASYSRPE 420
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
L E L+ RHL+P + P ++D F+++ P + +G+
Sbjct: 421 LAMAE-LLKRRHLSPIYGGRVMIAP-EEKDHFIIDPIPEIIHSGH 463
>gi|149047650|gb|EDM00320.1| polymerase (DNA directed), delta 2, regulatory subunit, isoform
CRA_e [Rattus norvegicus]
Length = 133
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTP 104
+C ++GTL+K M L+PSIL E S+E + P
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLIP 119
>gi|409096352|ref|ZP_11216376.1| DNA polymerase II small subunit [Thermococcus zilligii AN1]
Length = 690
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 22/232 (9%)
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPR 238
E Y VL+S ++VGS F +D + G + +E + + I +++IAG+ ++
Sbjct: 419 EKVYAVLLSDIHVGSKKFCEKAFIKFLDWLNGDVENEAHAELVSRIKYMIIAGDVVD-GI 477
Query: 239 GLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ----QP 292
G+ GQ LA D +F+ + L LL + + + I PG +D A ++PQ +
Sbjct: 478 GIYPGQYDELAIPD---IFDQYEALANLLRNVPKHIHMFIGPGNHDAARTAVPQPGFYEE 534
Query: 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQ-----LEFM 347
R +F +NP L FL G+ I+D+ SE ++ E M
Sbjct: 535 YARPIF----RLKNATIISNPAVIRLHGRDFLVAHGRGIEDV--VSEIPNRSHHRPAEAM 588
Query: 348 ERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L+ RHLAPT + P D D ++ES P ++ AG+ E R+ G
Sbjct: 589 VNLLKLRHLAPTFGGKVPIAPDPD-DLLVIESVPDLFQAGHVHVLEYRIYNG 639
>gi|297619942|ref|YP_003708047.1| DNA-directed DNA polymerase [Methanococcus voltae A3]
gi|297378919|gb|ADI37074.1| DNA-directed DNA polymerase [Methanococcus voltae A3]
Length = 619
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 30/258 (11%)
Query: 144 VVALHGKETSAGEFLVLDVL---DAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQ 200
++ G ++ G + +D D + P K++ E+ Y +S ++VGS
Sbjct: 313 IMGFEGTVSNDGRLMFVDKTYRPDVDVKPAKKI----DEEIYTAFLSDVHVGSHEFMAKT 368
Query: 201 FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFE---- 256
F+ + + G +G+ KEQ IA+++ +V IAG+ L++G + + L+E
Sbjct: 369 FEKFIRFLNGEVGNSKEQNIASKLKYVSIAGD-------LVDGVGIYPGQEEDLYEVDIV 421
Query: 257 -PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN---RCLFPGSATYNTFRSCTN 312
+E+ + Q+ + I PG +D + PQ R LFP TF +N
Sbjct: 422 SQYEEVANYIAQVPEHIHFVIGPGNHDALRPAEPQPTFTQEIRDLFPKENV--TF--VSN 477
Query: 313 PHCFELDNVRFLGTSGQTIDD-LQKYSEA--NDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
P + + +L G++ DD + + SEA + M+ L+ RHL PT P
Sbjct: 478 PCSVNIHGLDYLLYHGRSFDDVIGQISEAQYTNPCSIMQELLKRRHLCPTYGGRCPIAPE 537
Query: 370 TDRDPFLVESCPHVYFAG 387
RD +++ P ++ G
Sbjct: 538 V-RDYLVIDKKPDIFHTG 554
>gi|240102185|ref|YP_002958493.1| DNA polymerase II small subunit [Thermococcus gammatolerans EJ3]
gi|239909738|gb|ACS32629.1| DNA polymerase II small subunit (dp1/polB) [Thermococcus
gammatolerans EJ3]
Length = 660
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 19/294 (6%)
Query: 118 LVLEDESGRVKL------GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK 171
L LED +GR+K+ A+L+ S + +A+ GK + G + D + P+
Sbjct: 323 LELEDATGRIKVFINRNREDAKLVMSI-MHDAAIAVSGKYSGKG-MIFADHIYLPDVPKV 380
Query: 172 ELPLNSGEDK-YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIA 230
P ++K Y VL+S ++VGS F+ ++ + G++ +E + + I +++IA
Sbjct: 381 RSPKPPLKEKVYAVLLSDIHVGSNKFCEKAFEKFLEWLNGNVENETHAELVSRIKYMIIA 440
Query: 231 GNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSL 288
G+ ++ G+ GQ LA D +F+ + L LL + + + I PG +D A +L
Sbjct: 441 GDVVD-GVGIYPGQYEELAIPD---IFDQYEALANLLRNVPDHIHVFIGPGNHDAARTAL 496
Query: 289 PQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK---YSEANDQLE 345
PQ +NP +L FL G+ I+D+ + E
Sbjct: 497 PQPGFYEEYARPIYRLKNVTIISNPALIKLHGREFLIAHGRGIEDVVTEIPNRSHHRPAE 556
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
M L+ RHLAPT + P D ++ES P ++ AG+ + ++ G
Sbjct: 557 AMVELLKLRHLAPTFGGKVPIAP-DPEDLLVIESVPDLFQAGHVHVMQYKIYNG 609
>gi|304315526|ref|YP_003850673.1| DNA polymerase II, small subunit [Methanothermobacter marburgensis
str. Marburg]
gi|302588985|gb|ADL59360.1| predicted DNA polymerase II, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 487
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 147/359 (40%), Gaps = 44/359 (12%)
Query: 40 YF-ARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECV-IIGTL--YKHMKLKPSILDE 95
YF +R +R LL P K H+PI +L G + V IIG + + K +L+
Sbjct: 110 YFNSRFSCLRDLLKRR-PELKSHVPIA---DLRGGDDAVSIIGIINEIRTTKNNHRMLEL 165
Query: 96 YSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAG 155
T +V H ++H + E +E L V G+ A G+ A
Sbjct: 166 EDDTGEITVVV------HNENHKLFEK---------SEKLVRDEVIGVQGAKKGRFVVAS 210
Query: 156 EFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDE 215
E + G+ +E + D V +S +++GS T F V I G G E
Sbjct: 211 E-----IFHPGVPRIQEKEM----DFSVAFISDVHIGSQTFLEDAFTKFVKWINGDFGTE 261
Query: 216 KEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVP 273
+ IAA+I ++V+AG+ ++ G+ GQ L +D + +E E L +I +
Sbjct: 262 DQMNIAADIKYLVVAGDIVD-GIGIYPGQEKELIIRDINEQYE---EAARLFGEIRDDIK 317
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD 333
+ ++PG +D + + PQ + + +NP LD ++ L G++ DD
Sbjct: 318 IVMIPGNHDASRIAEPQPAIPEEYAKPLYSLKNVEFLSNPSMVSLDGIKTLIYHGRSFDD 377
Query: 334 L----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+ S L ME L RHLAP + D +++ PH+ G+
Sbjct: 378 MAMSVNGLSHERSDL-IMEELLEKRHLAPIYGERTPLASEIE-DHLVIDDVPHILHTGH 434
>gi|395644603|ref|ZP_10432463.1| metallophosphoesterase [Methanofollis liminatans DSM 4140]
gi|395441343|gb|EJG06100.1| metallophosphoesterase [Methanofollis liminatans DSM 4140]
Length = 470
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 28/253 (11%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + GK + G + L P P S VL+S ++VGS T ++
Sbjct: 179 VIGVRGKLSQDGTIFFANTLVRPDIPLSNAPYRSERPGRAVLISDIHVGSDTFLEDEWHR 238
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKEL 261
D I+G +I ++VIAG+ ++ G+ GQ L K+ +++ L
Sbjct: 239 FADWISGQ----------EDIGYLVIAGDLVD-GIGIYPGQEKELVIKN---IYQQYAAL 284
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQ---QPLNRCLFPGSATYNTFRSCTNPHCFEL 318
+L+ + + + I PG +D + PQ P R +P + + NP L
Sbjct: 285 GEMLSALPERLTIVISPGNHDVVRGAEPQPAIPPAFRIGYPANCVW-----VENPALVSL 339
Query: 319 DNVRFLGTSGQTIDDLQKY---SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPF 375
VR L G++ DD+ + N E ME L+ RHLAP P +DP
Sbjct: 340 QGVRVLIYHGRSFDDMIGTIPGASYNRPAEIMEEMLKRRHLAPIFGMRTPIAP-GKKDPL 398
Query: 376 LVESCPHVYFAGN 388
+++ P V F G+
Sbjct: 399 IIDPVPEVLFTGH 411
>gi|336475962|ref|YP_004615103.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929343|gb|AEH59884.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 513
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 126/284 (44%), Gaps = 27/284 (9%)
Query: 120 LEDESGR----VKLGGAELLPSA--YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL 173
LED +G V++ EL A + V+ + G T+ + L+ + + P
Sbjct: 187 LEDPTGSFSALVRVNDKELFEQASRLILDEVIGIGGVLTNDSKLLIANKITFPELPNSVS 246
Query: 174 PLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
N + K V +S +++GS T ++ +D + G +EK ++ +I ++++AG+
Sbjct: 247 CRNWTKGK-AVFISDIHIGSSTFLEDAWERFIDFLNGKSDNEKLSEMSRDIRYLLVAGDV 305
Query: 234 IEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
++ G+ GQ L+ KD ++E + +QI + + I PG +D + PQ
Sbjct: 306 VD-GIGIFPGQENELSIKD---VYEQYRVAGKYFSQIPENIQVVISPGNHDAVRQAEPQP 361
Query: 292 PLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK----YSEANDQL 344
L R FP T+ NP L+ V+ L G++IDD+ S N
Sbjct: 362 KLPERIRSFFPDHITF-----VGNPALLNLEGVKVLMYHGRSIDDMVAAVPGVSYQNPTT 416
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+E +R RH++P + + P D F++E P + G+
Sbjct: 417 AMVE-MMRRRHISPIYGSRVSIAP-EKNDHFVIEQVPDIVHCGH 458
>gi|383318897|ref|YP_005379738.1| DNA polymerase II, small subunit/DNA polymerase delta, subunit B
[Methanocella conradii HZ254]
gi|379320267|gb|AFC99219.1| Archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Methanocella conradii HZ254]
Length = 465
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 24/256 (9%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
VV + G G + ++ + P +P S E L+S +++GS T ++
Sbjct: 167 VVGVTGTVKDGGLLMASSIIYPDV-PNTNVPRRSEEPSAAALISDVHIGSNTFLEDRWLK 225
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL--FEPIKEL 261
+D + G D++ G+ + + +VV+AG+ ++ G+ GQ K+ S L +E +
Sbjct: 226 FIDWLNGDYEDDRSHGLVSRLKYVVVAGDLVD-GIGVYPGQE---KELSILDIYEQYSKA 281
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN---RCLFPGSATYNTFRSCTNPHCFEL 318
Q G+ + I PG +D + PQ L R +F + NP E+
Sbjct: 282 AEYFDQFPKGLNIIITPGNHDAVRQAEPQPALPEEVRRMF----KHPNITFAGNPSAVEI 337
Query: 319 DNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDR 372
+ VR L G+++DDL YS + M L+ RHL+P + P R
Sbjct: 338 EGVRLLLYHGRSLDDLVSSLPGASYSRPE---KAMAELLKRRHLSPIYGGKVMIAPEA-R 393
Query: 373 DPFLVESCPHVYFAGN 388
D F+++ P + +G+
Sbjct: 394 DHFVIDPLPDIMHSGH 409
>gi|73668538|ref|YP_304553.1| DNA polymerase II small subunit [Methanosarcina barkeri str.
Fusaro]
gi|72395700|gb|AAZ69973.1| DNA polymerase II small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 674
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 151/350 (43%), Gaps = 55/350 (15%)
Query: 118 LVLEDESGR----VKLGGAEL--LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK 171
L LED +G ++ EL L S + V+ + G T+ G ++ L Q
Sbjct: 346 LSLEDPTGSFSVLIRNSDKELFELASKIILDEVIGVTGSITNDGSLMLATKL-----IQP 400
Query: 172 ELPLN----SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
++P N +G VL+S ++VGS + +D + G E + +AA + ++
Sbjct: 401 DVPNNVQRRTGSHGKAVLISDVHVGSSQFMEDSWLDFLDFLKGESDSEDMRELAASVRYL 460
Query: 228 VIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFS 287
V+AG+ ++ G+ Q + D ++E ++ +I + + I PG +D +
Sbjct: 461 VVAGDIVD-GIGIYPDQEM-ELDILDVYEQYRKAAEYFREIPEHIRVIISPGNHDAVRQA 518
Query: 288 LPQQPLNRCL---FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYS 338
PQ L + FP F NP ELD VR L G++IDDL Y
Sbjct: 519 EPQPALPESIQAYFP-----ENFVFVGNPAFLELDGVRLLIYHGRSIDDLVATVPGVSYQ 573
Query: 339 E-ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN-----QQKF 392
E A LE L+ RHLAPT + + P +D F+++ P + G+ Q++
Sbjct: 574 EPAGAVLEM----LKCRHLAPTYGSRVSISP-EKKDYFIIDPVPDIIHTGHVHTLGVQRY 628
Query: 393 ETRLLKGSD--------RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+ LL S ++ V LV +P +V+L++ + L+F
Sbjct: 629 KNVLLVNSGTWQGQTEFQKRVNLVPVP-----ARVPIVDLEDFDVKILAF 673
>gi|71483066|gb|AAZ32499.1| DNA polymerase II small subunit [uncultured euryarchaeote Alv-FOS4]
Length = 466
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 132/294 (44%), Gaps = 39/294 (13%)
Query: 120 LEDESGRVK--LGGAELLPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKELPLN 176
LED SG +K AE + + V G+V GK + + + L +D ++ G + +
Sbjct: 155 LEDLSGEIKCLTRNAEFILNDEVIGVV----GKYSESRKMLYVDEIVRPGCMARGNRKIE 210
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
ED V ++S ++VGS T +++ ++ + +K +G A +I +++IAG+
Sbjct: 211 --EDISVAIISDIHVGSKTFIKGRWEKFLEWL------KKGEGEAGKIKYLLIAGD---- 258
Query: 237 PRGLLNGQNLASKDQSRL-----FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+++G + + L FE + L L ++ + + I+PG +D + PQ
Sbjct: 259 ---VVDGIGVYPHQEEELTILDIFEQYEALAEYLNEVPDYIKMVIIPGNHDLVRNAEPQP 315
Query: 292 PLNR---CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND---QLE 345
L R +F G+ +NP F + RF+ G ++++L + D E
Sbjct: 316 ALPREIEKMFNGNVEL-----LSNPTTFTIHGYRFMMYHGASLNNLVELIPGMDYTKTTE 370
Query: 346 FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
M+ L RHL+P + P T RD ++++ P V G+ F + G
Sbjct: 371 IMQYMLDMRHLSPVYGEKVPIVP-TPRDYLVIDTVPDVLITGHVHIFSYAMYHG 423
>gi|313214758|emb|CBY41028.1| unnamed protein product [Oikopleura dioica]
Length = 183
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 3/169 (1%)
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
+K D ++ + + +DI G D + +P + LFP +A + P +
Sbjct: 1 MKLADTFISSMCKNISVDIFTGTGDSGSLHVPTAAFHPLLFP-NARQGALKCFPTPVQYN 59
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
++ L S + +D L +Y + +E M++ L H P AP+ + PF DPF +
Sbjct: 60 VNGTSILHISNKVMDKLFEYGNFKNTIEAMKKLLICSHSCPIAPDVIPLAPFQTIDPFTI 119
Query: 378 ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
+ P + + + ++ G + V L+ +P F + AV+V K+
Sbjct: 120 MTAPDIMWCVGEDFYQEEFKYG--KISVLLIQVPCFKDRKQAVLVKTKS 166
>gi|20088936|ref|NP_615011.1| DNA polymerase II small subunit [Methanosarcina acetivorans C2A]
gi|19913782|gb|AAM03491.1| DNA-directed DNA polymerase, subunit 1 [Methanosarcina acetivorans
C2A]
Length = 650
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 47/346 (13%)
Query: 118 LVLEDESGR----VKLGGAEL--LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK 171
L LED +G ++ EL L S + V+ + G T+ G ++ L P
Sbjct: 322 LSLEDPTGSFSVLIRNSDKELFELASRLLLDEVIGVTGSVTNDGNLMLATKLLQPDVPNS 381
Query: 172 ELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
+ +G VVL+S ++VGS + +D + G E+ Q IAA++ ++V+AG
Sbjct: 382 -VQRRTGSHGKVVLISDVHVGSSQFLEDSWLDFLDFLKGESDSEEMQEIAAQVRYLVVAG 440
Query: 232 NSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+ ++ G+ Q + D ++E ++ ++ + + I PG +D + PQ
Sbjct: 441 DLVD-GIGIYPDQEM-ELDILDVYEQYRKAAEYFREVPEHIHVIISPGNHDAVRQAEPQP 498
Query: 292 PLNRCL---FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSE-AN 341
L + FP + T+ NP +LD V+ L G++IDDL Y E A
Sbjct: 499 ALPERICADFPENVTF-----VGNPALVDLDGVQILIYHGRSIDDLVASVPGVSYQEPAG 553
Query: 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN-----QQKFETRL 396
LE ++R RHLAPT + + P +D F+++ P + G+ Q+++ L
Sbjct: 554 AVLEMLKR----RHLAPTYGSRVSISP-EKKDYFIIDPVPDIIHTGHVHTLGVQRYKNVL 608
Query: 397 LKGSD--------RQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
L S ++ V L+ +P VV+L + + L+F
Sbjct: 609 LVNSGTWQAQTEFQKRVNLMPMP-----ARVPVVDLADFDVKILAF 649
>gi|315426861|dbj|BAJ48482.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343485579|dbj|BAJ51233.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|374854912|dbj|BAL57782.1| DNA polymerase II small subunit [uncultured crenarchaeote]
Length = 492
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 38/319 (11%)
Query: 140 VTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPL 199
+T VVA+ K G ++ +++ + Q+ E+ Y+ L+S ++VGS
Sbjct: 190 LTDTVVAMRIKRL-GGINILTEIIHPDIDEQQFRRTPQTEEAYICLISDIHVGSKHFRRD 248
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKD--QSRLFEP 257
F+ +D + + G+ + H+VI G+ +E G+ GQ KD + E
Sbjct: 249 YFESFLDWL-----NRGRDGVVKRLTHLVIGGDLVE-GVGIYPGQE---KDLMYRNVEEQ 299
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
++E LL +I + + +PG ++P +LPQ PL Y +NP
Sbjct: 300 LREAGKLLAEIPPNIEIVFIPGNHEPVRKALPQPPLQDRYRKLLDEYRRMIHLSNPAELV 359
Query: 318 LDNVRFLGTSGQTIDDL------QKYSE-ANDQLEFMERTLRWRHLAPTAPNTLGCYPFT 370
D R GQ +DD+ YS + E + LR+RHLAP ++ P +
Sbjct: 360 FDGRRVTVYHGQGLDDIIQSLPTTSYSTLPENAAEVVTALLRYRHLAPIYGGSVQLLP-S 418
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS-------------ETG 417
D ++ P++ G+ +L + + V+LV + + G
Sbjct: 419 KEDRLVIVEQPNLLQTGH-----IHVLVNTSYRGVKLVNAAAWQDQTDFQRSLGLEPDVG 473
Query: 418 VAVVVNLKNLECHTLSFGT 436
A V+NL ++ F +
Sbjct: 474 YAAVLNLASMNVEMKPFAS 492
>gi|350525927|ref|YP_004885463.1| DNA polymerase II small subunit [Thermococcus sp. AM4]
gi|345650746|gb|AEO14025.1| Archaeal DNA polymerase II small subunit [Thermococcus sp. AM4]
Length = 651
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 128/295 (43%), Gaps = 21/295 (7%)
Query: 118 LVLEDESGRVKL------GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVL--DAGLAP 169
L +ED +GR+K+ A+L+ + + VA+ GK + G + D
Sbjct: 314 LEIEDATGRIKVFINRNREDAKLVMNI-MHDSAVAVSGKYSGKGMIFADHIYLPDVPKVR 372
Query: 170 QKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
++ PL E Y VL+S ++VGS F+ ++ + G++ +E + + I +++I
Sbjct: 373 SQKPPLK--EKVYAVLLSDIHVGSNKFCENAFEKFLEWLNGNVENEAHAELVSRIKYLII 430
Query: 230 AGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFS 287
AG+ ++ G+ GQ LA D +F+ + L LL + + I PG +D A +
Sbjct: 431 AGDVVD-GVGIYPGQYDELAIPD---IFDQYEALANLLRNVPGHIHTFIGPGNHDAARTA 486
Query: 288 LPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK---YSEANDQL 344
LPQ +NP L FL G+ I+D+ +
Sbjct: 487 LPQPGFYEEYARPIYRLKNVTIISNPAVIRLHGRDFLIAHGRGIEDVVTEIPNRSHHRPA 546
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
E M L+ RHLAPT + P D ++ES P ++ AG+ + ++ G
Sbjct: 547 EAMVELLKLRHLAPTFGGKVPVAP-DPEDLLVIESVPDLFQAGHVHVMQYKIYNG 600
>gi|14590067|ref|NP_142131.1| DNA polymerase II small subunit [Pyrococcus horikoshii OT3]
gi|13431452|sp|O57863.1|DP2S_PYRHO RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|3256509|dbj|BAA29192.1| 622aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 622
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 33/299 (11%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAGEFLV--LDVLDAGL 167
+ED++ RVK+ ++LP A VVA G + G F + D L
Sbjct: 290 VEDQTDRVKVFLPKDSEDYREALKVLPDA-----VVAFKGVYSKRGIFFANRFYLPDVPL 344
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+++ PL E Y VL S ++VGS F ++ + G++ ++E+ I + I ++
Sbjct: 345 YRKQKPPLE--EKVYAVLTSDIHVGSKEFCEKAFIKFLEWLNGYVESKEEEEIVSRIRYL 402
Query: 228 VIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
+IAG+ ++ G+ GQ +L D +F+ + L LL+ + + + I PG +D A
Sbjct: 403 IIAGDVVD-GIGIYPGQYSDLIIPD---IFDQYEALANLLSNVPKHITIFIGPGNHDAAR 458
Query: 286 FSLPQQPL-NRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----SEA 340
++PQ P NT +NP L FL G+ I+D+ + +
Sbjct: 459 PAIPQPEFYEEYAKPLYKLKNTV-IISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHH 517
Query: 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L +E L+ RHLAPT + P D ++E P + G+ ++T + +G
Sbjct: 518 KPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLVIEEVPDLVQMGHVHVYDTAVYRG 574
>gi|14520339|ref|NP_125814.1| DNA polymerase II small subunit [Pyrococcus abyssi GE5]
gi|13431495|sp|Q9V2F3.1|DP2S_PYRAB RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|5457554|emb|CAB49045.1| dp1/polB intein containing DNA polymerase II small subunit
(2.7.7.7) [Pyrococcus abyssi GE5]
gi|380740863|tpe|CCE69497.1| TPA: DNA polymerase II small subunit [Pyrococcus abyssi GE5]
Length = 619
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 131/298 (43%), Gaps = 31/298 (10%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAGEFLV--LDVLDAGL 167
+ED++G VK+ ++LP A VVA G + G F + D L
Sbjct: 287 VEDKTGIVKVFLPKDSEDYREAFKVLPDA-----VVAFKGFYSKKGIFFANKFYLPDVPL 341
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+++ PL E Y +L+S ++VGS F ++ + GH+ ++E+ I + + ++
Sbjct: 342 YRKQKPPLE--EKVYAILISDIHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYL 399
Query: 228 VIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
+IAG+ ++ G+ GQ +L D +F+ + L LL + + + I PG +D A
Sbjct: 400 IIAGDVVD-GIGIYPGQYSDLVIPD---IFDQYEALANLLANVPEHITMFIGPGNHDAAR 455
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----SEAN 341
++PQ + +NP L FL G+ I+D+ + +
Sbjct: 456 PAIPQPEFYKEYAKPIYKLKNAIIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHK 515
Query: 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L +E L+ RHLAPT + P D ++E P + G+ ++ + +G
Sbjct: 516 PGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLVIEEVPDLVQMGHVHVYDAVVYRG 571
>gi|84490361|ref|YP_448593.1| DNA polymerase II small subunit [Methanosphaera stadtmanae DSM
3091]
gi|84373680|gb|ABC57950.1| PolB [Methanosphaera stadtmanae DSM 3091]
Length = 490
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLN 242
+V +S +++GS + F + + G+ G++++Q +A ++ ++VI G+ ++ G+
Sbjct: 231 IVFISDVHIGSKQFDEDSFNRFIKWLNGNYGNQEQQDLANDVKYLVIGGDLVD-GIGIYP 289
Query: 243 GQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
Q L KD ++E E LL I +P+ + PG +D + PQ L
Sbjct: 290 NQEKELKIKD---IYEQYAEAARLLGDIT-DIPIILSPGNHDATRLAEPQPALTEKYAKD 345
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD----LQKYSEANDQLEFMERTLRWRHL 356
+NP LDN++ G++ DD L Y+ A D + M+ L RHL
Sbjct: 346 LCNQKNIEMVSNPSVVNLDNIKVQIYHGRSFDDIVMALNNYTHA-DTDKIMQLLLEKRHL 404
Query: 357 APT-APNTLGCYPFTDRDPFLVESCPHVYFAG 387
AP T F D +++ P V G
Sbjct: 405 APIYGERTPLASEF--EDYLVIDDIPDVLHTG 434
>gi|312137398|ref|YP_004004735.1| DNA polymerase ii small subunit [Methanothermus fervidus DSM 2088]
gi|311225117|gb|ADP77973.1| DNA polymerase II small subunit [Methanothermus fervidus DSM 2088]
Length = 470
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 17/222 (7%)
Query: 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQG-IAAEIVHVVIAGNSIEIPRGLL 241
++ +S L++GS F+ L+ I E G IA EI +++IAG+ ++ G+
Sbjct: 214 ILFLSDLHIGSSKFLENSFEKLISWIN-------EGGNIAGEIEYIIIAGDIVD-GVGIY 265
Query: 242 NGQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299
GQ LA KD +E E LL +I + + I PG +D + + PQQPL +
Sbjct: 266 PGQEKELAIKDIEGQYE---EAARLLGEIRKDIKIIIAPGNHDASRIAEPQQPLEKEYAK 322
Query: 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSE-ANDQ-LEFMERTLRWRHLA 357
+NP +D ++ + G++ DD+ + ++D+ E M L RHLA
Sbjct: 323 ALYDLPNAEFVSNPSIICIDGLKIMIYHGRSFDDMAISANFSHDKPAEIMAELLEKRHLA 382
Query: 358 PTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
P P + D ++++ P ++ AG+ + + KG
Sbjct: 383 PIYGLRTPIAPEPE-DHLVIDTIPDIFHAGHVHINDYKKYKG 423
>gi|410722003|ref|ZP_11361320.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B, partial [Methanobacterium sp. Maddingley
MBC34]
gi|410597934|gb|EKQ52536.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B, partial [Methanobacterium sp. Maddingley
MBC34]
Length = 455
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 89/395 (22%), Positives = 159/395 (40%), Gaps = 51/395 (12%)
Query: 21 DEPFEIQKETYRG-------QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEG 73
D F+I K+ R + S + +R H +R LL + K PI L++
Sbjct: 87 DFDFQILKDASRKSYTNGEIKDLSSYFKSRYHKLRELLTNK-RELKDSYPIKEATGLDDV 145
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+ V + + ++ K +++ + S T L+ H ++H V + AE
Sbjct: 146 VKIVGMVSDIRNTKNSHKLIELEDETGSATVLI------HNENHEVFQQ---------AE 190
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ V G+V G E +++ G+ E P+ D V +S +++GS
Sbjct: 191 RVVKDEVIGVVGNRKGTLIMGSE-----LINPGVPRIDEKPM----DFATVFLSDIHIGS 241
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQ 251
T +F + I G GD++++ IA + +VV+AG+ ++ G+ Q+ L KD
Sbjct: 242 STFLNEEFDRFIHWINGDFGDDEQREIANNVKYVVVAGDIVD-GIGVYPHQDKELTIKDI 300
Query: 252 SRLFEPIKEL--DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
+ +E L DI + V + + PG +D + + PQ + G
Sbjct: 301 HQQYEEAARLFGDI------SHVKVIVAPGNHDASRLAEPQPAIPEDYAKGLYELKNLEF 354
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE---FMERTLRWRHLAPTAPNTLGC 366
+NP LD ++ L G++ DD+ + + M+ L RHLAP
Sbjct: 355 VSNPALVSLDGIKVLIYHGRSFDDMAMTVKGMSHQQSDLIMKELLEKRHLAPIYGERT-- 412
Query: 367 YPFTD--RDPFLVESCPHVYFAGNQQKFETRLLKG 399
P D ++E P V+ G+ + KG
Sbjct: 413 -PLASEIEDHLVIEEIPDVFHTGHVHINSYKRYKG 446
>gi|452209927|ref|YP_007490041.1| Archaeal DNA polymerase II small subunit [Methanosarcina mazei
Tuc01]
gi|452099829|gb|AGF96769.1| Archaeal DNA polymerase II small subunit [Methanosarcina mazei
Tuc01]
Length = 647
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 138/306 (45%), Gaps = 38/306 (12%)
Query: 118 LVLEDESGR----VKLGGAEL--LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ- 170
L LED +G ++ EL L S + V+ + G T+ G ++ + L P
Sbjct: 319 LSLEDSTGSFSVLIRNSDKELYELASRLILDEVIGVTGSVTNDGNLMLATKI---LQPDV 375
Query: 171 -KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
+ +G VVL+S ++VGS + +D + G E+ + IA+++ ++V+
Sbjct: 376 PNSIQHRTGSHGKVVLISDVHVGSSQFLEDAWLDFLDFLKGESDSEEMREIASQVRYLVV 435
Query: 230 AGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
AG+ ++ G+ Q + D ++E ++ +I + + I PG +D + P
Sbjct: 436 AGDLVD-GIGIYPDQEM-ELDILDVYEQYRKAADYFKEIPRHIRVIISPGNHDAVRQAEP 493
Query: 290 QQPLNRCL---FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSE- 339
Q L + FP + T+ NP +LD +R L G++IDDL Y E
Sbjct: 494 QPALPERICADFPENVTF-----VGNPALVDLDGIRILIYHGRSIDDLVASVPGVSYHEP 548
Query: 340 ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN-----QQKFET 394
A LE ++R RHLAPT + + P +D F+++ P + G+ Q+++
Sbjct: 549 AGAVLEMLKR----RHLAPTYGSRVSISP-EKKDYFIIDPVPDIIHTGHVHTLGVQRYKN 603
Query: 395 RLLKGS 400
LL S
Sbjct: 604 VLLVNS 609
>gi|337285082|ref|YP_004624556.1| DNA polymerase II small subunit [Pyrococcus yayanosii CH1]
gi|334901016|gb|AEH25284.1| DNA polymerase II small subunit [Pyrococcus yayanosii CH1]
Length = 634
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 155/374 (41%), Gaps = 36/374 (9%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
+ Y+ ++ +RL +R +L P+ + + I + + E IIG + + ++
Sbjct: 241 EAYASLFRSRLKKLRKILRE-NPDVRDVVDIGKLSYVRAEEEVTIIGLVNSKKETNRGLI 299
Query: 94 DEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETS 153
E T + P + D ++LP A VVA G +
Sbjct: 300 FEVEDATGTVKVFLPKDSEDYRDAF--------------KVLPDA-----VVAFRGFYSK 340
Query: 154 AGEFLV--LDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH 211
G F + D + +++ P+ E Y +L+S +++GS F ++ + G+
Sbjct: 341 KGIFFANRFYLPDVPIYRKQKPPIE--EKVYAILISDIHIGSREFCEKAFLRFLEWLNGY 398
Query: 212 LGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIA 269
+ ++E+ I + + +++IAG+ ++ G+ GQ +L D +F+ + L LL +
Sbjct: 399 VSSKEEEEIVSRVKYLIIAGDVVD-GVGIYPGQYNDLIIPD---IFDQYEALANLLANVP 454
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQ 329
+ + I PG +D A ++PQ + +NP L FL G+
Sbjct: 455 EHITMFIGPGNHDAARPAIPQPEFYKEYAKPLYELKNAVIISNPAIINLHGRDFLIAHGR 514
Query: 330 TIDDLQKY----SEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYF 385
I+D+ + S L +E L+ RHLAPT + P D ++E P +
Sbjct: 515 GIEDVVSFVPGLSHHKPALPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLVIEEVPDLVH 572
Query: 386 AGNQQKFETRLLKG 399
G+ ++ + +G
Sbjct: 573 MGHVHVYDAIVYRG 586
>gi|21227447|ref|NP_633369.1| DNA polymerase II small subunit [Methanosarcina mazei Go1]
gi|20905816|gb|AAM31041.1| DNA polymerase II small subunit [Methanosarcina mazei Go1]
Length = 647
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 138/306 (45%), Gaps = 38/306 (12%)
Query: 118 LVLEDESGR----VKLGGAEL--LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ- 170
L LED +G ++ EL L S + V+ + G T+ G ++ + L P
Sbjct: 319 LSLEDSTGSFSVLIRNSDKELYELASRLILDEVIGVTGSVTNDGNLMLATKI---LQPDV 375
Query: 171 -KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI 229
+ +G VVL+S ++VGS + +D + G E+ + IA+++ ++V+
Sbjct: 376 PNSIQHRTGSHGKVVLISDVHVGSSQFLEDAWLDFLDFLKGESDSEEMREIASQVRYLVV 435
Query: 230 AGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
AG+ ++ G+ Q + D ++E ++ +I + + I PG +D + P
Sbjct: 436 AGDLVD-GIGIYPDQEM-ELDILDVYEQYRKAADYFKEIPRHIRVIISPGNHDAVRQAEP 493
Query: 290 QQPLNRCL---FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSE- 339
Q L + FP + T+ NP +LD +R L G++IDDL Y E
Sbjct: 494 QPALPERICADFPENVTF-----VGNPALVDLDGIRILIYHGRSIDDLVASVPGVSYHEP 548
Query: 340 ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN-----QQKFET 394
A LE ++R RHLAPT + + P +D F+++ P + G+ Q+++
Sbjct: 549 AGAVLEMLKR----RHLAPTYGSRVSISP-EKKDYFIIDPVPDIIHTGHVHTLGVQRYKN 603
Query: 395 RLLKGS 400
LL S
Sbjct: 604 VLLVNS 609
>gi|148643331|ref|YP_001273844.1| DNA polymerase II small subunit [Methanobrevibacter smithii ATCC
35061]
gi|261349876|ref|ZP_05975293.1| DNA polymerase II small subunit [Methanobrevibacter smithii DSM
2374]
gi|148552348|gb|ABQ87476.1| DNA polymerase II, small subunit [Methanobrevibacter smithii ATCC
35061]
gi|288860659|gb|EFC92957.1| DNA polymerase II small subunit [Methanobrevibacter smithii DSM
2374]
Length = 571
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 117/271 (43%), Gaps = 39/271 (14%)
Query: 132 AELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNV 191
AE L V G++ +G E + V+ P+KE+ D +V +S +++
Sbjct: 271 AEKLVKDEVIGVLADKNGDLAIGNEIINPGVM---RIPKKEM------DFSIVFLSDVHI 321
Query: 192 GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASK 249
GS T F +D I G+E++ IA + ++VI G+ ++ G+ Q LA K
Sbjct: 322 GSLTFLEDAFTRFIDWINCEFGNEEQVKIAESVKYLVIGGDIVD-GIGVYPNQEKELAIK 380
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
D ++ + E L I + + + I PG +D + + PQ + +
Sbjct: 381 DITQQY---NEAARFLGNIRSDIKIIIAPGNHDASRVAEPQPAVPEEYAKALYELDNVEF 437
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDL----QKYS-EANDQLEFMERTLRWRHLAPTAPNTL 364
+NP LD + L G++ DDL ++++ E ND L ME L+ RHLAP
Sbjct: 438 ISNPGVVSLDGINVLIYHGRSFDDLVMAVKEFTHEKNDLL--MEELLKKRHLAPI----- 490
Query: 365 GCYPFTDRDP--------FLVESCPHVYFAG 387
+ +R P +++ P V+ G
Sbjct: 491 ----YGERTPLASELEDYLVIDEVPDVFHTG 517
>gi|222445572|ref|ZP_03608087.1| hypothetical protein METSMIALI_01212 [Methanobrevibacter smithii
DSM 2375]
gi|222435137|gb|EEE42302.1| nucleic acid-binding domain protein [Methanobrevibacter smithii DSM
2375]
Length = 558
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 115/265 (43%), Gaps = 27/265 (10%)
Query: 132 AELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNV 191
AE L V G++ +G E + V+ P+KE+ D +V +S +++
Sbjct: 258 AEKLVKDEVIGVLADKNGDLAIGNEIINPGVM---RIPKKEM------DFSIVFLSDVHI 308
Query: 192 GSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASK 249
GS T F +D I G+E++ IA + ++VI G+ ++ G+ Q LA K
Sbjct: 309 GSLTFLEDAFTRFIDWINCEFGNEEQVKIAESVKYLVIGGDIVD-GIGVYPNQEKELAIK 367
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
D ++ + E L I + + + I PG +D + + PQ + +
Sbjct: 368 DITQQY---NEAARFLGNIRSDIKIIIAPGNHDASRVAEPQPAVPEEYAKALYELDNVEF 424
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDL----QKYS-EANDQLEFMERTLRWRHLAPTAPNTL 364
+NP LD + L G++ DDL ++++ E ND L ME L+ RHLAP
Sbjct: 425 ISNPGVVSLDGINVLIYHGRSFDDLVMAVKEFTHEKNDLL--MEELLKKRHLAPIYGERT 482
Query: 365 GCYPFTD--RDPFLVESCPHVYFAG 387
P D +++ P V+ G
Sbjct: 483 ---PLASELEDYLVIDEVPDVFHTG 504
>gi|390354828|ref|XP_003728416.1| PREDICTED: RNA-directed DNA polymerase from mobile element
jockey-like [Strongylocentrotus purpuratus]
Length = 549
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI 234
ED Y++L+SGL +GS ++ + QL+VD ITG LG +Q + +++V V+IAGNS+
Sbjct: 478 EDMYIILMSGLGIGSDQTDLMNLQLMVDIITGQLGTADQQKMFSKVVRVIIAGNSL 533
>gi|313222642|emb|CBY41664.1| unnamed protein product [Oikopleura dioica]
Length = 233
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
QY ++Y +R +L+R+ L V P + ++ + V+ G K + +P IL
Sbjct: 50 QYHKVYKSRSNLLRSRLEEAVDEKFPEFNTRKLYQMRIDQRAVVYGIFIKTITNQPEILH 109
Query: 95 EYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG--AELLPSAYVTGIVVALHGKET 152
EY +++S + N++ D L EDES R++ G AE + + +TG VVA++G+
Sbjct: 110 EYDEDKSE---FEGDNYLSEGDILGFEDESQRIECSGITAEKIRTI-LTGEVVAVYGRVI 165
Query: 153 SAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
+G F + D + G +E + S +D+ L S
Sbjct: 166 DSGTFEIEDWVRKG----REGAVRSDKDRGAALCS 196
>gi|253744217|gb|EET00451.1| Hypothetical protein GL50581_2295 [Giardia intestinalis ATCC 50581]
Length = 445
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 144/368 (39%), Gaps = 42/368 (11%)
Query: 75 ECVIIGTLYKHMKLKPSILDEYS---KERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG 131
E VI G L + K + S + Y + TP+ + + D +ED +++L
Sbjct: 67 EVVIFGILILNGKRRTSAVKTYRTLLEPDIQTPIAE--KLVTDGDTYYVEDGGIKIQLDI 124
Query: 132 AELLPSAYVTGIVVALHGKETSAGEFLV------LDVLDAG-LAPQKELPLNSGEDKYVV 184
+ S V G V+AL G + F V +DV A L P +L ++ G + V+
Sbjct: 125 KAIPRSTLVPGAVIALRGLFAAPDTFSVSGLLYPVDVSAAKPLQPSPDLWID-GTAQLVL 183
Query: 185 LVSGLNVGSGTSNPLQFQLLVDHI-TGHLGDEKEQGIAAEIVHVVIAG--------NSIE 235
V+G+ +G ++ L + T L K+ + V AG N++
Sbjct: 184 FVAGMGLGWEAAHAANAMLFATALGTSQLTSIKQVVLCGGTYAPVDAGPAAAACLGNALS 243
Query: 236 IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR 295
G L+ Q AS D +D +L +IAA P ++ G +DP PQ P+
Sbjct: 244 PTTGFLDLQ--ASYDL---------VDTILARIAAARPTVVVSGQSDPTPRLWPQAPIPN 292
Query: 296 CLFPGSATYNTFRSCTNP-HCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERT-LRW 353
+ P + N+ S + P F +D G + L ++ + + T L+
Sbjct: 293 IVLPRCSLTNSLTSASCPAKLFTIDKQIVWIIDGAVLTHLDALLPSSLDVSMLVATLLQT 352
Query: 354 RHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSD------RQLVRL 407
HL P AP P D F+++ PH G + T D + ++
Sbjct: 353 AHLCPQAPLFFDAQPL-QSDMFILDEPPHCIVVGGHPQTATPEAYTIDYNWNDTQHTCKV 411
Query: 408 VCIPKFSE 415
CIP F+
Sbjct: 412 FCIPSFTS 419
>gi|269861193|ref|XP_002650310.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Enterocytozoon bieneusi H348]
gi|220066258|gb|EED43748.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Enterocytozoon bieneusi H348]
Length = 367
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 167/402 (41%), Gaps = 65/402 (16%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
+QY++ Y R ++ Y +P +PI + ++ C+I L+ +K SI
Sbjct: 13 EQYNENYQYRFKVLSN--YIFLPK-NIDIPIKKIGKVNT-ELCMIKAILFIKSNIKSSIF 68
Query: 94 DEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG-AELLPSAYVTGIVVALHGKET 152
+ ++ + +++ D +ED+ + + +L + +TG+V+ G+
Sbjct: 69 NTINQVSNKKNNNTKEVYINSDTKYFIEDDDCTIDINFICDLYNNYLITGMVLGFIGR-C 127
Query: 153 SAGEFLVLDVLDAGLAPQKEL--PLNSGEDKYVVLVSGLNVGSGTSNPLQFQL-LVDHIT 209
G F ++ P L N +K ++L S + + +N ++ L ++D
Sbjct: 128 ENGIFNCTQIV----YPSDALGNSNNIKNEKRLLLFSNILI----NNNFEYILPILDLFK 179
Query: 210 GHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIA 269
D VV+ G +I N+ + D SR + + ++
Sbjct: 180 NKFDD------------VVLIGTIFDI--------NMHNWDFSRFERFLNTFNGMMY--- 216
Query: 270 AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQ 329
I+PG DP + LPQ PL+R +F S +NP +++ F+
Sbjct: 217 ------IIPGYGDPTSCFLPQTPLHRMIFNNSKKVILL---SNPSQIQINEKHFIFLDHN 267
Query: 330 TI-DDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG- 387
I DL +Y L +E + RH P +P+TL P ++ DPF+++ V AG
Sbjct: 268 YILTDLLRYKHKGIPLNALEALINCRHAVPCSPDTLPSIPSSECDPFIIDKVDFVV-AGA 326
Query: 388 ---NQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKN 426
+ ++F+ + ++ +P F++T A++ ++KN
Sbjct: 327 SITSHREFKNKF----------IITVPDFNKTKTAILFSMKN 358
>gi|327401585|ref|YP_004342424.1| DNA-directed DNA polymerase [Archaeoglobus veneficus SNP6]
gi|327317093|gb|AEA47709.1| DNA-directed DNA polymerase [Archaeoglobus veneficus SNP6]
Length = 502
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 119/287 (41%), Gaps = 33/287 (11%)
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY- 182
+G++K ELL V G+ G+ A + DV P+N + +
Sbjct: 196 TGKLKDTAMELLGDE-VIGVSGTYRGRSIIADRIIFPDV-----------PMNGSKKNWG 243
Query: 183 --VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
V +S + GS T + V I +GDE+ Q +A + ++V+AG+ ++ G+
Sbjct: 244 FNVAFISDTHFGSNTFMEDAWNRFVSWINCEIGDERSQQLAESVKYIVLAGDVVD-GVGV 302
Query: 241 LNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
GQ L D +++ +E L ++ V + + PG +D + PQ L +
Sbjct: 303 YPGQEKELTIMD---IYQQYEEAAYQLDKLPKRVKVILSPGNHDAVRQAEPQPCLPKEY- 358
Query: 299 PGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQ------KYSEANDQLEFMERTLR 352
S N NP +++ V+ G+++DDL Y E + ME L+
Sbjct: 359 -ASLFSNNVIHVGNPALIDIEGVKIQIYHGRSLDDLMTKIPRLSYEEP---AKAMEELLK 414
Query: 353 WRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
RHLAP+ N P D +++ P V +G+ + +G
Sbjct: 415 RRHLAPSYGNRSPIAP-EKEDYLVIDEVPDVLHSGHVHTYGATFYRG 460
>gi|432118135|gb|ELK38020.1| DNA polymerase delta subunit 2 [Myotis davidii]
Length = 163
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 69 ELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
EL+ C + GTL K M+L PS L E SKE S P ++H DD LVLE+E +K
Sbjct: 35 ELQPRERCCVEGTLLKAMELWPSNLQEVSKEHSLLPTPPWSKYIHADDELVLEEELQCIK 94
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVS 187
L + + TG+++ + G G+FLV + GLA Q P D++V+L+S
Sbjct: 95 L-EVTIDMFSLATGMLLTVLGSMRDDGKFLVEEHCFPGLAHQMPAP-PLDLDRFVLLMS 151
>gi|410670930|ref|YP_006923301.1| DNA-directed DNA polymerase [Methanolobus psychrophilus R15]
gi|409170058|gb|AFV23933.1| DNA-directed DNA polymerase [Methanolobus psychrophilus R15]
Length = 512
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 33/289 (11%)
Query: 118 LVLEDESGR----VKLGGAELLPSA--YVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK 171
L +ED +G V+ EL A V V G T+ G+ +++ + P
Sbjct: 183 LEIEDPTGTFSVLVRTADKELFEQAAHLVLDEVAGFTGTLTNDGKLMIVQKIILPDLPNT 242
Query: 172 ELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
+ G VL S +++GS T ++ +D + G+ E I+ E+ +++IAG
Sbjct: 243 -MSRKGGTYGKAVLTSDVHIGSSTFLEEPWEHFIDFLKGNTDSEALADISKEVRYLLIAG 301
Query: 232 NSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLP 289
+ ++ G+ GQ L+ +D +++ K +I + + I PG +D + P
Sbjct: 302 DLVD-GIGIYPGQEKELSIQD---IYDQYKRAAEYCEEIPKHIRIVISPGNHDAVRQAEP 357
Query: 290 QQPLNRCL---FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL-------QKYSE 339
Q L C+ FP + T+ NP +LD R L G++IDDL ++
Sbjct: 358 QPKLPECIRADFPDNVTF-----VGNPAMVDLDGARVLLYHGRSIDDLVAAVPGVSYHAP 412
Query: 340 ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+E M ++RHL+P + + P +D F++ P + G+
Sbjct: 413 TKGMVEMM----KFRHLSPIYGSRVSIAP-EKQDHFVLSQVPDILHCGH 456
>gi|71483036|gb|AAZ32470.1| DNA polymerase II large subunit [uncultured euryarchaeote Alv-FOS1]
Length = 465
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 124/263 (47%), Gaps = 23/263 (8%)
Query: 144 VVALHGKETSAGE-FLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
V+ + GK +++ + F V +++ G+A + ++ ED V ++S ++VGS T +++
Sbjct: 176 VIGVLGKYSASRKMFYVDEIIRPGIAGKTRKKID--EDISVAIISDVHVGSKTFIKERWE 233
Query: 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262
+ + + Q A +I +++IAG++++ G+ Q D +F+ +EL
Sbjct: 234 KFLQWL------KSGQDEAGKIKYLLIAGDAVD-GIGVYPHQE-EELDILDIFDQYEELA 285
Query: 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPL-NRC--LFPGSATYNTFRSCTNPHCFELD 319
L ++ V + I+PG +D + PQ L R +F G+ +NP F +
Sbjct: 286 RYLEEVPDYVKVVIIPGNHDIVRTAEPQPALPERIEKMFNGNVEL-----LSNPAMFSIH 340
Query: 320 NVRFLGTSGQTIDDLQKYSEANDQL---EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
FL G ++++L + D + E M+R L RHL+P + P T RD +
Sbjct: 341 GYTFLMYHGASLNNLVELIPGMDYMKTGEIMKRMLDMRHLSPVYGEKVPMVP-TPRDYLV 399
Query: 377 VESCPHVYFAGNQQKFETRLLKG 399
+++ P V G+ F +G
Sbjct: 400 IDTVPDVLVTGHVHIFSYEQYRG 422
>gi|313236509|emb|CBY11823.1| unnamed protein product [Oikopleura dioica]
Length = 209
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 35 QYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILD 94
QY ++Y +R +L+R+ L V P + ++ + V+ G K + +P IL
Sbjct: 50 QYHKVYKSRSNLLRSRLEEAVDEKFPEFNTRKLYQMRIDQRAVVYGIFIKTITNQPEILH 109
Query: 95 EYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG--AELLPSAYVTGIVVALHGKET 152
EY +++S + N++ D L EDES R++ G AE + + +TG VVA++G+
Sbjct: 110 EYDEDKSE---FEGDNYLSEGDILGFEDESQRIECSGITAEKIRTI-LTGEVVAVYGRVI 165
Query: 153 SAGEFLVLDVLDAG 166
+G F + D + G
Sbjct: 166 DSGTFEIEDWVRKG 179
>gi|288931472|ref|YP_003435532.1| DNA-directed DNA polymerase [Ferroglobus placidus DSM 10642]
gi|288893720|gb|ADC65257.1| DNA-directed DNA polymerase [Ferroglobus placidus DSM 10642]
Length = 488
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 29/285 (10%)
Query: 124 SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKY- 182
SG++K EL+ V G+ ++G A + DV P+N+G K
Sbjct: 179 SGKIKEEAMELVGDE-VIGVSGTINGNRIIADRIIFPDV-----------PINNGRKKRS 226
Query: 183 --VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
+V +S ++ GS T +++ V I G+EK +A E+ +V +AG+ ++ G+
Sbjct: 227 FRMVFISDIHFGSKTFLKEEWERFVSWINCESGNEKLVELAEEVKYVFVAGDVVD-GVGI 285
Query: 241 LNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
Q L D + +E E I V + + PG +D + PQ L +
Sbjct: 286 YPEQEKELEIVDIYQQYETAAE---YFDMIRKDVKIIVSPGNHDAVRQAEPQPALPKEF- 341
Query: 299 PGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL----QKYSEANDQLEFMERTLRWR 354
S N NP ++ V+ L G+++DDL + + A Q E L+ R
Sbjct: 342 -SSLFSNNVVCVGNPSMIDVSGVKVLMYHGRSLDDLISKINRLNYAKPQEALFE-LLKRR 399
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
HL+P + P D +++ P V +G+ + T +G
Sbjct: 400 HLSPMYGERVPIAP-EKEDYLVIDEVPDVLHSGHVHTYGTGFYRG 443
>gi|325957874|ref|YP_004289340.1| DNA-directed DNA polymerase [Methanobacterium sp. AL-21]
gi|325329306|gb|ADZ08368.1| DNA-directed DNA polymerase [Methanobacterium sp. AL-21]
Length = 501
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG 239
D V +S +++GS T F V+ + G GDE +Q IA ++ ++V+AG+ ++ G
Sbjct: 241 DFSAVFISDIHIGSSTFQEEAFNNFVNWLNGDFGDETQQDIANDVRYLVVAGDVVD-GIG 299
Query: 240 LLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCL 297
+ Q L K+ ++E +E LL QI V + I PG +D + PQ +
Sbjct: 300 IYPHQEEELTIKN---IYEQYEEAARLLGQI-DNVKMIIAPGNHDACRLAEPQPAIPENY 355
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL----QKYSEANDQLEFMERTLRW 353
+NP LD + L G++ DDL S L M+ +
Sbjct: 356 AEDLYKLKNAEFVSNPSLVSLDGFKTLIYHGRSFDDLAMTINGLSHQTSDL-IMKELIEK 414
Query: 354 RHLAPT-APNTLGCYPFTDRDPFLVESCPHVYFAGN 388
RHLAP T + D ++E P ++ G+
Sbjct: 415 RHLAPIYGERTPLASEYEDH--LVIEEIPDIFHTGH 448
>gi|300521508|gb|ADK25965.1| DNA polymerase D small subunit [Candidatus Nitrososphaera
gargensis]
Length = 487
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 41/285 (14%)
Query: 173 LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
LP S + Y VL+S L+VGS +F +D L + + I +I + I G+
Sbjct: 220 LPNRSKSEAYAVLISDLHVGSKYFMEKEFLRFLD----WLSSDDDNDIVRKIKFLCIGGD 275
Query: 233 SIEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
I+ G+ Q+ L D + LL ++ + + ++PG +DP +LPQ
Sbjct: 276 VID-GIGIFPNQDKELLMMDADKQMSHAAR---LLAKVPKHIKMLVIPGNHDPGRRALPQ 331
Query: 291 QPLNRCLFPGSATYNTFR---SCT---NPHCFELDNVRFLGTSGQTIDDLQKYSEA---N 341
+ PG + +CT NP +L+ V+ L GQ++DD+ + +
Sbjct: 332 PAI-----PGKDLADHLYGLPNCTMLGNPAFVDLNGVKLLMFHGQSLDDVIATTPGLSYS 386
Query: 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG-----NQQKFETRL 396
E M+ L+ RHLAPT P D ++ P ++ AG + Q + L
Sbjct: 387 RPAEAMKVLLKARHLAPTYGERTPVAP-EQEDMMVITDVPDIFHAGHVHVTDVQSYRGTL 445
Query: 397 LKGSDRQLVRLVCIPKFSET-------GVAVVVNLKNLECHTLSF 434
+ S + KF +T G+A++VNL L+ F
Sbjct: 446 IVNSGAWQSQT----KFQQTMGITPSPGMAILVNLATLQPSIQDF 486
>gi|408402626|ref|YP_006860609.1| DNA polymerase II small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408363222|gb|AFU56952.1| DNA polymerase II small subunit [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 487
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 41/285 (14%)
Query: 173 LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
LP S + Y VL+S L+VGS +F +D L + + I +I + I G+
Sbjct: 220 LPNRSKSEAYAVLISDLHVGSKYFMEKEFLRFLD----WLSSDDDNDIVRKIKFLCIGGD 275
Query: 233 SIEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
I+ G+ Q+ L D + LL ++ + + ++PG +DP +LPQ
Sbjct: 276 VID-GIGIFPNQDKELLMMDADKQMSHAAR---LLAKVPKHIKMLVIPGNHDPGRRALPQ 331
Query: 291 QPLNRCLFPGSATYNTFR---SCT---NPHCFELDNVRFLGTSGQTIDDLQKYSEA---N 341
+ PG + +CT NP +L+ V+ L GQ++DD+ + +
Sbjct: 332 PAI-----PGKDLADHLYGLPNCTMLGNPAFVDLNGVKLLMFHGQSLDDVIATTPGLSYS 386
Query: 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG-----NQQKFETRL 396
E M+ L+ RHLAPT P D ++ P ++ AG + Q + L
Sbjct: 387 RPAEAMKVLLKARHLAPTYGERTPVAP-EQEDMMVITDVPDIFHAGHVHVTDVQSYRGTL 445
Query: 397 LKGSDRQLVRLVCIPKFSET-------GVAVVVNLKNLECHTLSF 434
+ S + KF +T G+A++VNL L+ F
Sbjct: 446 IVNSGAWQSQT----KFQQTMGITPSPGMAILVNLATLQPSIQDF 486
>gi|164663045|ref|XP_001732644.1| hypothetical protein MGL_0419 [Malassezia globosa CBS 7966]
gi|159106547|gb|EDP45430.1| hypothetical protein MGL_0419 [Malassezia globosa CBS 7966]
Length = 218
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 67 VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERS-TTPLVKPHNFMHPDDHLVLEDESG 125
+L++ + C+++GT Y M+LKP +L + +++ S P + D L LED+SG
Sbjct: 67 LLDIPPRQMCMVVGTFYSAMQLKPDVLQDIARDLSLPAPPPRTSYVDTEHDELFLEDQSG 126
Query: 126 RVKLGGAELLPSAY-----VTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
RV++ G L P VTG+V + G ET G+ V V GL P
Sbjct: 127 RVRVVGDLLRPGTQLAQTCVTGVVACVIGIETPDGDLEVHHVFFPGLPP 175
>gi|116753971|ref|YP_843089.1| DNA polymerase II small subunit [Methanosaeta thermophila PT]
gi|116665422|gb|ABK14449.1| DNA polymerase II small subunit [Methanosaeta thermophila PT]
Length = 487
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 125/289 (43%), Gaps = 39/289 (13%)
Query: 120 LEDESGRVKLGGAELLPSAY------VTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL 173
LED +G V + A P AY VT VV + G G ++ L Q +
Sbjct: 167 LEDPTGMVTVLFARDSP-AYEDSMLLVTDEVVGITGTSDGRGRIFAKSIVWPDLQAQPQ- 224
Query: 174 PLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
PL + + L S L+VGS + V I+G E G+++++ +VIAG+
Sbjct: 225 PLTAASGGALFL-SDLHVGSNKFLMDTWNRFVSWISG----EDPTGLSSDVGCIVIAGDI 279
Query: 234 IEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
++ G+ GQ L KD ++E + L++QI + V + I PG +D + PQ
Sbjct: 280 VD-GIGVYPGQEDELEIKD---IYEQYQLAADLISQIPSWVKIVISPGNHDIVRQAEPQP 335
Query: 292 PLNR---CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD----LQKYSEANDQL 344
L + LFPG+ + NP + + L G++IDD + S +L
Sbjct: 336 ALPKEIQSLFPGNVMF-----VGNPSWITISSRPVLIYHGRSIDDFVLKIPGLSYREPEL 390
Query: 345 EFMERTLRWRHLAPTAPNTLGCYP------FTDRDPFLVESCPHVYFAG 387
+E LR RHL P N + P D+ P ++ C HV+ G
Sbjct: 391 AMVE-MLRRRHLCPIYGNRVSVAPEAEDHYVIDKPPAILH-CGHVHVVG 437
>gi|422294284|gb|EKU21584.1| polymerase delta regulatory subunit [Nannochloropsis gaditana
CCMP526]
Length = 163
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 7 EARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALL-YSLVPNWKPHLP-- 63
E +LQR +Y + F + T+ QQYS +Y RL LMR +L + W P
Sbjct: 43 EEKLQRVTLSYTPTYQRFRAKARTF-TQQYSHMYTNRLRLMRPMLEAAATAKWGTGAPDG 101
Query: 64 --------IC-TVLELEEG-RECVIIGTLYKHMKLKPSILDEYSKE 99
+C +++L +G R ++IGT++K M L+PS+LDEY E
Sbjct: 102 KEGEDAPTLCQKIIDLVDGARTSMVIGTIFKDMPLRPSLLDEYRDE 147
>gi|389851680|ref|YP_006353914.1| DNA polymerase II small subunit [Pyrococcus sp. ST04]
gi|388248986|gb|AFK21839.1| DNA polymerase II small subunit [Pyrococcus sp. ST04]
Length = 648
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 31/298 (10%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAGEFLV--LDVLDAGL 167
+ED++G VK+ ++LP A VVA G + G F + D L
Sbjct: 316 IEDQTGVVKVFLPKDSEDYREAFKVLPDA-----VVAFKGFYSKKGLFFANRFYLPDVPL 370
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+++ PL E Y +L+S ++VGS F ++ + G++ ++E+ I + + ++
Sbjct: 371 YRKQKPPLE--EKVYAILISDIHVGSKEFCEKAFMKFLEWLNGYVESKEEEEIVSRVKYL 428
Query: 228 VIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
+IAG+ ++ G+ GQ +L D +F+ + L LL + + + I PG +D A
Sbjct: 429 IIAGDVVD-GIGVYPGQYSDLIIPD---IFDQYEALANLLANVPDHITMFIGPGNHDAAR 484
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK----YSEAN 341
++PQ +NP L FL G+ I+D+ +
Sbjct: 485 PAIPQPEFYEEYAKPIYKLKNAVIISNPAVIRLHGRDFLIAHGRGIEDVVANVPGLTHHK 544
Query: 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L +E L+ RHLAPT + P D ++E P + G+ ++ +G
Sbjct: 545 PGLPMIE-LLKMRHLAPTFGEKVPIAP-DPEDLLVIEDVPDLVQMGHVHVYDAVTYRG 600
>gi|18976390|ref|NP_577747.1| DNA polymerase II small subunit [Pyrococcus furiosus DSM 3638]
gi|397652268|ref|YP_006492849.1| DNA polymerase II small subunit [Pyrococcus furiosus COM1]
gi|13431467|sp|P81412.1|DP2S_PYRFU RecName: Full=DNA polymerase II small subunit; Short=Pol II;
AltName: Full=DP1
gi|2967436|dbj|BAA25163.1| DNA polymerase II subunit 1 [Pyrococcus furiosus DSM 3638]
gi|18891915|gb|AAL80142.1| DNA polymerase II subunit 1 [Pyrococcus furiosus DSM 3638]
gi|393189859|gb|AFN04557.1| DNA polymerase II small subunit [Pyrococcus furiosus COM1]
Length = 613
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 33/299 (11%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAG-----EFLVLDVLD 164
+ED +G+VK+ ++LP A VVA G + G +F + DV
Sbjct: 281 IEDLTGKVKVFLPKDSEDYREAFKVLPDA-----VVAFKGVYSKRGILYANKFYLPDV-- 333
Query: 165 AGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEI 224
L +++ PL E Y +L+S ++VGS F ++ + G++ ++E+ I + +
Sbjct: 334 -PLYRRQKPPLE--EKVYAILISDIHVGSKEFCENAFIKFLEWLNGNVETKEEEEIVSRV 390
Query: 225 VHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284
+++IAG+ ++ G+ GQ A +F+ + L LL+ + + + I PG +D A
Sbjct: 391 KYLIIAGDVVD-GVGVYPGQ-YADLTIPDIFDQYEALANLLSHVPKHITMFIAPGNHDAA 448
Query: 285 NFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD----LQKYSEA 340
++PQ + +NP L FL G+ I+D + +
Sbjct: 449 RQAIPQPEFYKEYAKPIYKLKNAVIISNPAVIRLHGRDFLIAHGRGIEDVVGSVPGLTHH 508
Query: 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L +E L+ RH+AP + P D ++E P V G+ ++ + +G
Sbjct: 509 KPGLPMVE-LLKMRHVAPMFGGKVPIAP-DPEDLLVIEEVPDVVHMGHVHVYDAVVYRG 565
>gi|288561468|ref|YP_003424954.1| DNA polymerase small subunit DP1 PolD1 [Methanobrevibacter
ruminantium M1]
gi|288544178|gb|ADC48062.1| DNA polymerase small subunit DP1 PolD1 [Methanobrevibacter
ruminantium M1]
Length = 657
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 161 DVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGI 220
+++D G+ + +N G V S +++GS T F + I G G E++ +
Sbjct: 379 NIIDPGVPRIAKKEVNFG----TVFTSDIHIGSSTFLEDAFTRFIKWINGDFGSEEQMEM 434
Query: 221 AAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMP 278
A + +++I G+ ++ G+ Q+ LA KD + ++ E L+ I + V + I P
Sbjct: 435 ANNVKYMIIGGDIVD-GIGVYPNQDKELAIKDITAQYD---EAARLVGDIRSDVKIIITP 490
Query: 279 GPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL---- 334
G +D + + PQ + N +NP LD + L G+ IDD+
Sbjct: 491 GNHDASRVAEPQPAVPEKYAKSLYELNNVEFLSNPSMVSLDGLEVLIYHGRGIDDMVMGS 550
Query: 335 QKYSEANDQLEFMERTLRWRHLAP 358
+S + L M+ L RHLAP
Sbjct: 551 NDFSHERNDL-VMKEFLNKRHLAP 573
>gi|386000967|ref|YP_005919266.1| DNA polymerase D, small subunit DP1 [Methanosaeta harundinacea 6Ac]
gi|357209023|gb|AET63643.1| DNA polymerase D, small subunit DP1 [Methanosaeta harundinacea 6Ac]
Length = 637
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 23/264 (8%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
VV + G G F +L L + G +L+S ++VGS +
Sbjct: 330 VVGVTGTTDGKGRFFAKALLRPDLQARSAAAFGEGG---ALLLSDVHVGSTYFMEDAWDR 386
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKEL 261
+ I G + E GIA+++ + VIAG+ ++ G+ GQ +LA KD +E EL
Sbjct: 387 FIGWIRGEV--EDPLGIASKVKYAVIAGDLVDG-IGIYPGQEGDLAIKDIWEQYERAAEL 443
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNV 321
+ +I + + + PG +D + PQ L L P TF NP F L V
Sbjct: 444 ---VAEIPDRISIVLSPGNHDVVRQAEPQPALPERLRPLFKKNVTF--VGNPASFILGGV 498
Query: 322 RFLGTSGQTIDDLQ------KYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPF 375
+L G++IDDL Y+E + M L+ RHL+P N + P + D
Sbjct: 499 DWLVYHGRSIDDLVLKIPGLSYAEPEKAMVEM---LKRRHLSPIYGNRVSIAP-EEEDLL 554
Query: 376 LVESCPHVYFAGNQQKFETRLLKG 399
++ P V +G+ KG
Sbjct: 555 VIRRPPAVLHSGHVHTVGMARYKG 578
>gi|374724921|gb|EHR77001.1| DNA polymerase II small subunit [uncultured marine group II
euryarchaeote]
Length = 544
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 37/292 (12%)
Query: 117 HLV--LEDESGRVKL------------GGAELLPSAYVTGIVVALHGKETSAGEFLVLDV 162
HL+ LEDE+G + ++L + + V+ + G + G+ +D
Sbjct: 215 HLIWNLEDETGELTCLLTKRKGDDRDRAHEQILEAGLMPDDVLGVSGTFSQTGDMFYVDD 274
Query: 163 LDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAA 222
L + + + ++ V +S ++VGS T Q+ +V +A
Sbjct: 275 LHFPMK-DRHVKASAEHGVSVAFLSDIHVGSKTFLEAQWHKMVRWF-------HTDPLAK 326
Query: 223 EIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGP 280
I +++++G+ ++ G+ GQ+ L+ D LF +E LL + V ++PG
Sbjct: 327 TIKYLILSGDCVD-GVGIYPGQDSELSIPD---LFGQYQEFARLLELLPEWVECVMLPGN 382
Query: 281 NDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD----LQK 336
+D + PQ + + +NT NP F L VR L G++IDD L+
Sbjct: 383 HDAVRPAEPQPTFEKDI---QQDFNTTTFVGNPCDFSLHGVRLLSYHGKSIDDFVAGLRT 439
Query: 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+ A D +E M + LR RHLAP P + D ++ P ++ G+
Sbjct: 440 VTYA-DPVEAMRQMLRRRHLAPQWGGKTPLSPEPE-DGLVIREVPDIFVTGH 489
>gi|333988605|ref|YP_004521212.1| DNA-directed DNA polymerase [Methanobacterium sp. SWAN-1]
gi|333826749|gb|AEG19411.1| DNA-directed DNA polymerase [Methanobacterium sp. SWAN-1]
Length = 500
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 40/373 (10%)
Query: 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSIL 93
+ +S + +R ++ +L P + + PI V+ LE + + + + K I+
Sbjct: 119 KDFSAYFNSRYQKLKGILEKK-PELRENHPIKDVVNLENDVKVIGMVNEIRTTKNNHKII 177
Query: 94 DEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETS 153
+ TT LV H D+ + + +E + V G+V G
Sbjct: 178 ELEDGTGYTTVLV------HKDNEKLFQ---------FSEKIVKDEVIGVVGIRKGSLLI 222
Query: 154 AGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG 213
A E +++ G+ P+KE + D V +S +++GS T F+ + G+ G
Sbjct: 223 ASE-----LINPGV-PRKE---DKKMDFSAVFISDVHIGSSTFLEDAFKRFTSWMNGNYG 273
Query: 214 DEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAG 271
DE+++ IA ++ ++VIAG+ ++ G+ Q L KD ++ +E LL I G
Sbjct: 274 DEEQREIANDVRYLVIAGDLVD-GIGVYPHQEDELTIKD---IYGQYEEAARLLGDI-NG 328
Query: 272 VPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTI 331
V + I PG +D + PQ L +NP L+ + L G++
Sbjct: 329 VKIVISPGNHDACRLAEPQPALPEHYASELYKLKNTEFVSNPAVVSLEGINTLMYHGRSF 388
Query: 332 DD----LQKYSEANDQLEFMERTLRWRHLAPT-APNTLGCYPFTDRDPFLVESCPHVYFA 386
DD + S + L M+ L RHLAP T + D ++E P V+
Sbjct: 389 DDFAMTVNGMSHEHTDL-IMKELLEKRHLAPIYGERTPLASEYEDH--LVIEEIPDVFHT 445
Query: 387 GNQQKFETRLLKG 399
G+ + KG
Sbjct: 446 GHVHINAYKKYKG 458
>gi|15668883|ref|NP_247686.1| DNA polymerase II small subunit [Methanocaldococcus jannaschii DSM
2661]
gi|2833545|sp|Q58113.1|DP2S_METJA RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|1591417|gb|AAB98694.1| DNA polymerase delta small subunit [Methanocaldococcus jannaschii
DSM 2661]
Length = 594
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 19/234 (8%)
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
+P + V+ G + +G + +D + P KE P E+ Y+ +S ++VGS
Sbjct: 278 IPDDILLDEVIGAIGTVSKSGSSIYVDEIIRPALPPKE-PKRIDEEIYMAFLSDIHVGSK 336
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQS 252
+F+ + + G + +E E+ + + + ++ IAG+ ++ G+ GQ +L D
Sbjct: 337 EFLHKEFEKFIRFLNGDVDNELEEKVVSRLKYICIAGDLVD-GVGVYPGQEEDLYEVD-- 393
Query: 253 RLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR---CLFPGSATYNTFRS 309
+ E +E+ + L QI + + I PG +D + PQ L LF Y
Sbjct: 394 -IIEQYREIAMYLDQIPEHISIIISPGNHDAVRPAEPQPKLPEKITKLFNRDNIYFVGNP 452
Query: 310 CT-NPHCFELDNVRFLGTSGQTIDDLQ---KYSEANDQLEFMERTLRWRHLAPT 359
CT N H F+ L G++ DDL + + + + M+ ++ R L PT
Sbjct: 453 CTLNIHGFDT-----LLYHGRSFDDLVGQIRAASYENPVTIMKELIKRRLLCPT 501
>gi|289192944|ref|YP_003458885.1| DNA-directed DNA polymerase [Methanocaldococcus sp. FS406-22]
gi|288939394|gb|ADC70149.1| DNA-directed DNA polymerase [Methanocaldococcus sp. FS406-22]
Length = 594
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 19/234 (8%)
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
LP + V+ G G + +D + + P KE P E+ Y+ +S ++VGS
Sbjct: 278 LPDDILLDEVIGAIGTVNRTGSSIYVDEIIRPVFPPKE-PKRIDEEIYMAFLSDIHVGSK 336
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQS 252
+F+ V + G + +E E+ + + + ++ IAG+ ++ G+ GQ +L D
Sbjct: 337 EFLHKEFEKFVRFLNGDVDNELEEKVVSRLKYICIAGDLVD-GVGVYPGQEEDLYEVD-- 393
Query: 253 RLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN---RCLFPGSATYNTFRS 309
+ E +E+ + + QI + + I PG +D + PQ L LF Y
Sbjct: 394 -IMEQYREIAMYIEQIPEHISIIISPGNHDAVRPAEPQPKLPDKIAKLFNRDNIYFVGNP 452
Query: 310 CT-NPHCFELDNVRFLGTSGQTIDDLQ---KYSEANDQLEFMERTLRWRHLAPT 359
CT N H F+ L G++ DDL + + + + M+ ++ R L PT
Sbjct: 453 CTLNIHGFDT-----LLYHGRSFDDLVGQIRTASYENPVTIMKELIKRRLLCPT 501
>gi|333910952|ref|YP_004484685.1| DNA-directed DNA polymerase [Methanotorris igneus Kol 5]
gi|333751541|gb|AEF96620.1| DNA-directed DNA polymerase [Methanotorris igneus Kol 5]
Length = 577
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 116/277 (41%), Gaps = 35/277 (12%)
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKELPLNSGEDKYVVLV 186
K+ EL P + V+ G G + D + + P++ P + E YV +
Sbjct: 255 KIANGEL-PDDILLDEVIGFIGTINDKGNLMFADRAIRPDITPKE--PNRTDEQIYVAFL 311
Query: 187 SGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246
S ++VGS F ++ + G++ + E+ + + I ++ IAG+ L++G +
Sbjct: 312 SDIHVGSYEFMKDTFNKFIEFLNGNVSNGVEEKVVSRIKYISIAGD-------LVDGVGI 364
Query: 247 ASKDQSRLFE-----PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ----QPLNRCL 297
+ L+E +E+ + L QI + + I PG +D + PQ + + +
Sbjct: 365 YPGQEEDLYEIDIMSQYEEIALYLEQIPEHIHVIISPGNHDAVRPAEPQPKLPEKITKLF 424
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTL 351
+ T+ NP + + FL G++ DD+ KY+E + M+ L
Sbjct: 425 NMDNVTF-----VGNPAMVNVHGLDFLLYHGRSFDDIVGLVPSAKYTEPS---TIMKELL 476
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+ R L PT P +D ++E P ++ G+
Sbjct: 477 KRRLLCPTYGGRCPIAP-EHKDYLVIEREPDIFHTGH 512
>gi|432328333|ref|YP_007246477.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Aciduliprofundum sp. MAR08-339]
gi|432135042|gb|AGB04311.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Aciduliprofundum sp. MAR08-339]
Length = 478
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 139/342 (40%), Gaps = 56/342 (16%)
Query: 120 LEDESGRVK--LGGAELLPSAYVTGIVVALHGKETSAGEFL-VLDVLDAGL-APQK---- 171
LED +G+VK G L + V G+V G G F+ V +++ G+ PQK
Sbjct: 166 LEDPTGKVKCIYQGENFLLNDEVIGVV----GTYREDGNFVYVKEIVRPGVRKPQKNRRI 221
Query: 172 ELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
E P+ + V++S +++GS ++ + + K AE V +I G
Sbjct: 222 EDPIGA------VIISDVHIGSKMFLRKNWEKFIAWL-------KSGRDGAETVKYLIIG 268
Query: 232 NSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL---LTQIAAGVPLDIMPGPNDPANFSL 288
+ G+ Q +++ + + K+ + L L + + + ++PG +D +
Sbjct: 269 GDLVDGIGIYPNQ----EEELEIIDIYKQYEALANYLADLPDYIKVIMIPGNHDLVRNTE 324
Query: 289 PQQPLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEAND 342
PQ PL + LF G+A + +NP F L FL G TI+DL + + +
Sbjct: 325 PQPPLPHDIQSLFNGNAEF-----LSNPSVFSLHGYTFLIYHGATINDLVELIPGASYEN 379
Query: 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR 402
M L RHL P+ + P RD ++ P V+ G+ F KG
Sbjct: 380 IAPIMSHILEMRHLGPSYGGKVPIAPLP-RDFMAIDLVPDVFITGHVHAFTYSNYKGV-- 436
Query: 403 QLVRLVCI---PKFSET-------GVAVVVNLKNLECHTLSF 434
++ C K+ + G A ++N E LSF
Sbjct: 437 HMINASCWQAQTKYQKMMNFNPVPGKATLINFHTDEVKILSF 478
>gi|282165668|ref|YP_003358053.1| family D DNA polymerase small subunit [Methanocella paludicola
SANAE]
gi|282157982|dbj|BAI63070.1| family D DNA polymerase small subunit [Methanocella paludicola
SANAE]
Length = 475
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 119/281 (42%), Gaps = 25/281 (8%)
Query: 120 LEDESGRVKL---GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLN 176
LED +G + + + S + VV + G G + V+ + P +P
Sbjct: 152 LEDRTGSMGVLISKDKDFFDSPLLLDEVVGVSGTVKEGGLLMASGVIYPDV-PNTNVPRR 210
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
S E V L+S +++GS T + +D + G + +A+ + +VV+AG+ ++
Sbjct: 211 SDEPAAVALISDVHIGSNTFLEDPWMRFIDWLNGD--SDAHHDLASRLKYVVVAGDMVD- 267
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN-- 294
G+ GQ + +++ ++ Q + + I PG +D + PQ L
Sbjct: 268 GIGVYPGQE-KELHIADVYDQYRKAAEYFDQFPRHLKIVIAPGNHDAVRQAEPQPALPEE 326
Query: 295 -RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFM 347
R +F + NP E++ VR L G+++DDL YS+ + M
Sbjct: 327 VRRMF----RHPNVTFAGNPSAVEMEGVRLLIYHGRSLDDLVSNLPGASYSKPE---KAM 379
Query: 348 ERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
L+ RHL+P + P +D F+++ P + +G+
Sbjct: 380 AELLKRRHLSPIYGGKVMIAPEA-KDHFVIDPLPDIMHSGH 419
>gi|294494693|ref|YP_003541186.1| DNA-directed DNA polymerase [Methanohalophilus mahii DSM 5219]
gi|292665692|gb|ADE35541.1| DNA-directed DNA polymerase [Methanohalophilus mahii DSM 5219]
Length = 486
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 117/267 (43%), Gaps = 23/267 (8%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
VV + G T+ G+ L+ L P L N + K + +S +++GS T Q+
Sbjct: 191 VVGVSGNLTNDGKLLIAKKLVFPDLPNMGLSKNGSQGK-ALFISDVHIGSNTFLQGQWDD 249
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKEL 261
+ + + + +A ++ ++V+AG+ ++ G+ GQ L D +++ +E+
Sbjct: 250 FMTFVKRESDNPELNKLAQQLRYIVVAGDIVD-GVGIYPGQEEELTIPD---IYDQYEEV 305
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQ----QPLNRCLFPGSATYNTFRSCTNPHCFE 317
QI + + + I PG +D + PQ + + + P + NP +
Sbjct: 306 AHYFNQIPSDITVVIGPGNHDAVRQAEPQPTFPERIRKMFDP------RIKFVGNPALVD 359
Query: 318 LDNVRFLGTSGQTIDD----LQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
LD V L G++IDD +Q S + + +E R RHL+PT + + P D
Sbjct: 360 LDGVLVLMYHGRSIDDFVSSIQGISYSEPEKAMLEMVKR-RHLSPTYGSRVSIAP-EKTD 417
Query: 374 PFLVESCPHVYFAGNQQKFETRLLKGS 400
F+++ P + G+ + +G+
Sbjct: 418 HFVIDHIPDILHCGHVHTVGVKQYRGT 444
>gi|336121717|ref|YP_004576492.1| DNA-directed DNA polymerase [Methanothermococcus okinawensis IH1]
gi|334856238|gb|AEH06714.1| DNA-directed DNA polymerase [Methanothermococcus okinawensis IH1]
Length = 595
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 15/260 (5%)
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
LP + VV G +G + + + + P+K P E Y +S +++GS
Sbjct: 281 LPDDILLDEVVGFSGFIPDSGNVMFANECIRPDITPKK--PKCIDEKIYTAFLSDIHIGS 338
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253
F+ V+ + G++ + E+ I + + ++ IAG+ ++ G+ GQ D
Sbjct: 339 YEFLDKSFKKFVEFLNGNVNNGLEEKIVSRLKYISIAGDLVD-GVGIYPGQEYDLYDVD- 396
Query: 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNP 313
+ KE+ L QI + + I PG +D + PQ + + +NP
Sbjct: 397 IISQYKEIATYLEQIPEHIHIIISPGNHDALRPAEPQPIFPERILKLFNGMDNITFLSNP 456
Query: 314 HCFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+ + FL G++ DD+ KYSE M+ L+ RHL PT
Sbjct: 457 GFVNVHGLDFLLYHGRSFDDVIGQISSAKYSEP---TSIMKELLKRRHLCPTYGGRCPIA 513
Query: 368 PFTDRDPFLVESCPHVYFAG 387
P D ++ + P ++ G
Sbjct: 514 P-EQEDYLVIHNEPDIFHTG 532
>gi|70914220|ref|XP_731769.1| DNA polymerase delta small subunit [Plasmodium chabaudi chabaudi]
gi|56501978|emb|CAH87757.1| DNA polymerase delta small subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 104
Score = 51.6 bits (122), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 110 NFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAP 169
N+ D L EDE+ R+KL G + YVTG+ V + G S G V +++ A L P
Sbjct: 6 NYSQDQDVLFFEDETARLKLEG-NINSDHYVTGLTVIIKGVGMSNGSIYVDELIYAYL-P 63
Query: 170 QKELP-LNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHI 208
+ E+P S +DKY++ VSGL + +N LL + I
Sbjct: 64 KIEIPKCISNDDKYILFVSGLFINEQNTNINNISLLRNFI 103
>gi|159112740|ref|XP_001706598.1| Hypothetical protein GL50803_10775 [Giardia lamblia ATCC 50803]
gi|157434696|gb|EDO78924.1| hypothetical protein GL50803_10775 [Giardia lamblia ATCC 50803]
Length = 450
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 83/369 (22%), Positives = 138/369 (37%), Gaps = 40/369 (10%)
Query: 75 ECVIIGTLYKHMKLKPSILDEYSK--ERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA 132
+ VI G L + K + S + Y E + P V + D +ED R++L
Sbjct: 67 DVVIFGILVLNSKQRKSAVKTYRTLLEPTVQPPVA-EKLVTDGDTYYVEDGGTRIQLDIK 125
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVL-------DAGLAPQKELPLNSGEDKYVVL 185
L S V G V AL G + F + ++L L P +L +S + V+
Sbjct: 126 ALSGSVPVPGAVAALRGLFVAPDTFSIEELLYPVEVFATTPLQPSPDLWTDSMA-QLVLF 184
Query: 186 VSGLNVGSGTSNPLQFQLLVDHI-TGHLGDEKE--------QGIAAEIVHVVIAGNSIEI 236
V+G+++G S+ + L + T K+ + A GN++
Sbjct: 185 VAGMDLGWEASHAARAVLFATALGTPPFSSVKQVVLCGGTYAPVDAGPAAAACLGNALSP 244
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
G L+ Q AS D +D +L ++AA P ++PG +DP PQ P+
Sbjct: 245 TTGFLDLQ--ASYDL---------VDTILARVAAARPTILVPGQSDPTPRLWPQAPVPSI 293
Query: 297 LFPGSATYNTFRSCTNP-HCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERT-LRWR 354
+ P + N+ S P D G + L A+ + + T L+
Sbjct: 294 VLPRCSLTNSLISAPCPAKLLTRDKQLVWVIDGTVLTYLAALIPASLTVPALVATLLQVA 353
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQL------VRLV 408
HL P +P P D F+++ P N + T + ++
Sbjct: 354 HLCPQSPLFFDVQPL-QLDAFVLDEPPQYIVVSNHPQTTTPEAYALEYDWKGVQCTCKIF 412
Query: 409 CIPKFSETG 417
C+P F+ TG
Sbjct: 413 CVPSFTSTG 421
>gi|88603655|ref|YP_503833.1| DNA polymerase II small subunit [Methanospirillum hungatei JF-1]
gi|88189117|gb|ABD42114.1| DNA polymerase II small subunit [Methanospirillum hungatei JF-1]
Length = 474
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 42/230 (18%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + G ++ G + D + P P S VL+S ++VGS T +
Sbjct: 179 VIGVRGSLSNEGNLIFADQIFRPDIPFSHAPYTSDRKGAAVLISDIHVGSDTFLEDAWNR 238
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR------LFEP 257
D ++ +E+ ++++AG+ L++G + DQ + ++E
Sbjct: 239 FADWLSD-----------SEVSYLLVAGD-------LVDGIGI-YPDQDKELVITNIYEQ 279
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN---RCLFPGSATYNTFRSCTNPH 314
L +LT + + + + + PG +D + PQ + R +P S T+ NP
Sbjct: 280 YDVLGEMLTDLPSHIRIILSPGNHDVVRGAEPQPAIPEKFRSAYPSSCTF-----VENPA 334
Query: 315 CFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAP 358
L VRFL G++ DDL Y +A+ E + L+ RHLAP
Sbjct: 335 LVNLQGVRFLMYHGRSFDDLIGLMPGASYEKAH---EIIPEMLKRRHLAP 381
>gi|124484833|ref|YP_001029449.1| DNA polymerase II small subunit [Methanocorpusculum labreanum Z]
gi|124362374|gb|ABN06182.1| DNA-directed DNA polymerase [Methanocorpusculum labreanum Z]
Length = 471
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 114/284 (40%), Gaps = 33/284 (11%)
Query: 120 LEDESGRVKL---------GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQ 170
+ED +G +K+ AE + V G+ L + + D+L P
Sbjct: 151 VEDSTGCIKVLFNRNRDGFAEAEAIIPDEVIGVKGQLARDSMGKTQMVFSDMLFRPDIPL 210
Query: 171 KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIA 230
+P S E V +S ++VGS T P ++ + + +I +++IA
Sbjct: 211 TNVPSPSKEQGKAVFISDIHVGSNTFLPDAWEKFSEWMQTR----------EDIGYLLIA 260
Query: 231 GNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ 290
G+ ++ G+ Q+ D ++E + L+ + + + I PG +D + PQ
Sbjct: 261 GDVVD-GIGIYPDQD-KELDIKTIYEQYDHVGDLMAALPDWLKIVISPGNHDAVRGAEPQ 318
Query: 291 QPLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQL 344
L R FP + T+ NP + +V L G++IDDL K+ +
Sbjct: 319 PALPEEFRGNFPSNVTF-----VENPALVNIQSVNVLMYHGRSIDDLIKFIPGASYTKVG 373
Query: 345 EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
E ME L+ RHL P TD+D ++ P + G+
Sbjct: 374 EIMEAMLKRRHLGPIYGQRTPLLS-TDKDALVIRDVPDIIHTGH 416
>gi|330507627|ref|YP_004384055.1| DNA polymerase D, small subunit DP1 [Methanosaeta concilii GP6]
gi|328928435|gb|AEB68237.1| DNA polymerase D, small subunit DP1 [Methanosaeta concilii GP6]
Length = 540
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 113/266 (42%), Gaps = 26/266 (9%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + G G V +L + P + L G + +L+S L+VGS +Q
Sbjct: 247 VIGVTGISDGNGRIFVKSLLWPDM-PNQTASLEKGSG-HAILISDLHVGSKYFMDEAWQR 304
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKEL 261
D + G D G+A+++ ++VIAG+ ++ G+ GQ +LA D ++ +
Sbjct: 305 FSDWLNGEADDPS--GLASQVEYLVIAGDLVD-GIGIYPGQQNDLAIMD---IYSQYEAA 358
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS----CTNPHCFE 317
LL I + + + I PG +D + PQ L P Y FR NP
Sbjct: 359 AGLLNAIRSDIKIIISPGNHDIVRQAEPQP----ALPPEVQKY--FRPDMLFVGNPAWVT 412
Query: 318 LDNVRFLGTSGQTIDD----LQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRD 373
L + L G++IDD L + AN + +E LR RHL+P + + P + D
Sbjct: 413 LSGISVLIYHGRSIDDLVLRLPGIAYANPEKAMIE-MLRRRHLSPIYGSRVSIAP-ENED 470
Query: 374 PFLVESCPHVYFAGNQQKFETRLLKG 399
+++ P + G+ KG
Sbjct: 471 HYVISHPPAILHCGHVHTVGIARYKG 496
>gi|256811030|ref|YP_003128399.1| DNA polymerase II small subunit [Methanocaldococcus fervens AG86]
gi|256794230|gb|ACV24899.1| DNA-directed DNA polymerase [Methanocaldococcus fervens AG86]
Length = 592
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 21/235 (8%)
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
LP + V+ G + +G + +D ++ +P++ P E+ Y+ +S +++GS
Sbjct: 276 LPDDILLDEVIGAIGTVSRSGSSIYVDEIVRPTFSPKE--PRRIDEEIYMAFLSDIHIGS 333
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQ 251
+F+ V + G + +E E+ + + + ++ IAG+ ++ G+ GQ +L D
Sbjct: 334 NEFLHKEFEKFVRFLNGDVDNELEEKVVSRLKYICIAGDLVD-GVGVYPGQEEDLYEVD- 391
Query: 252 SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL-NRC--LFPGSATYNTFR 308
+ E KE+ + L QI + + I PG +D + PQ L N+ LF Y
Sbjct: 392 --IVEQYKEIAMYLEQIPEHISIIISPGNHDAVRPAEPQPKLPNKITKLFNRDNIYFVGN 449
Query: 309 SC-TNPHCFELDNVRFLGTSGQTIDDLQ---KYSEANDQLEFMERTLRWRHLAPT 359
C N H F+ L G++ DDL + + + M ++ R L PT
Sbjct: 450 PCVVNIHGFDT-----LLYHGRSFDDLVGQIRNASYENPTTIMRELIKRRLLCPT 499
>gi|134046702|ref|YP_001098187.1| DNA polymerase II small subunit [Methanococcus maripaludis C5]
gi|132664327|gb|ABO35973.1| DNA polymerase II small subunit [Methanococcus maripaludis C5]
Length = 583
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 23/254 (9%)
Query: 120 LEDESGRVKL------GGAELLPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKE 172
LEDE+G +L LPS + V+ G G+ + +D + P+
Sbjct: 249 LEDENGTFRLLLMKDKMDKGDLPSDVLLDEVIGFEGTINDKGDLMFVDRAFRPDITPK-- 306
Query: 173 LPLNSGEDK-YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
P + ++K Y +S ++VGS + F + + G + E+ I + + ++ IAG
Sbjct: 307 -PTKTTDEKIYTAFLSDVHVGSHEFSNKVFAKFIKFLNGEVNSGLEEKIVSRLKYISIAG 365
Query: 232 NSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+ ++ G+ GQ D + E+ L Q+ + I PG +D + PQ
Sbjct: 366 DLVD-GVGIYPGQEYDLYDVD-IISQYAEVAAYLEQVPEHIKFIISPGNHDALRPAEPQP 423
Query: 292 PLNR---CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL---QKYSEANDQLE 345
+ LFP TF NP + + L G++ DD+ ++ +
Sbjct: 424 TFDESITSLFPKENV--TF--VGNPGVVNMHGLDLLLYHGRSFDDIIGQVSVAQYTNPPS 479
Query: 346 FMERTLRWRHLAPT 359
M+ L+ RHL PT
Sbjct: 480 IMKELLKRRHLCPT 493
>gi|150402929|ref|YP_001330223.1| DNA polymerase II small subunit [Methanococcus maripaludis C7]
gi|150033959|gb|ABR66072.1| DNA-directed DNA polymerase [Methanococcus maripaludis C7]
Length = 578
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 23/254 (9%)
Query: 120 LEDESGRVKL------GGAELLPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKE 172
LEDE+G +L LPS + V+ G G+ + +D + P+
Sbjct: 244 LEDENGTFRLLLMKDKMDKGDLPSDVLLDEVIGFEGTINDKGDLMFVDRAFRPDITPK-- 301
Query: 173 LPLNSGEDK-YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
P + ++K Y +S ++VGS + F + + G + E+ I + + ++ IAG
Sbjct: 302 -PTKTTDEKIYTAFLSDVHVGSHEFSNKVFAKFIKFLNGEVNSGLEEKIVSRLKYISIAG 360
Query: 232 NSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+ ++ G+ GQ D + E+ L Q+ + I PG +D + PQ
Sbjct: 361 DLVD-GVGIYPGQEYDLYDVD-ILSQYAEIAAYLEQVPEHIKFIISPGNHDALRPAEPQP 418
Query: 292 PLNR---CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL---QKYSEANDQLE 345
+ LFP TF NP + + L G++ DD+ ++ +
Sbjct: 419 TFDESITSLFPKENV--TF--VGNPGVVNIHGLDLLLYHGRSFDDIIGQISVAQYTNPPS 474
Query: 346 FMERTLRWRHLAPT 359
M+ L+ RHL PT
Sbjct: 475 IMKELLKRRHLCPT 488
>gi|159905326|ref|YP_001548988.1| DNA polymerase II small subunit [Methanococcus maripaludis C6]
gi|159886819|gb|ABX01756.1| DNA-directed DNA polymerase [Methanococcus maripaludis C6]
Length = 584
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 23/254 (9%)
Query: 120 LEDESGRVKL------GGAELLPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKE 172
LEDE+G +L LPS + V+ G G+ + +D + P+
Sbjct: 250 LEDENGTFRLLLMKDKMDKGDLPSDVLLDEVIGFEGTINDKGDLMFVDRAFRPDITPK-- 307
Query: 173 LPLNSGEDK-YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
P + ++K Y +S ++VGS + F + + G + E+ I + + ++ IAG
Sbjct: 308 -PTKTTDEKIYTAFLSDVHVGSHEFSNKVFAKFIKFLNGDVNSGLEEKIVSRLKYISIAG 366
Query: 232 NSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+ ++ G+ GQ D + E+ L Q+ + I PG +D + PQ
Sbjct: 367 DLVD-GVGIYPGQEYDLYDVD-IISQYAEVAAYLEQVPEHIKFIISPGNHDALRPAEPQP 424
Query: 292 PLNR---CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL---QKYSEANDQLE 345
+ LFP TF NP + + L G++ DD+ ++ +
Sbjct: 425 TFDESITSLFPKENV--TF--VGNPGVVNMHGLDLLLYHGRSFDDIIGQVSVAQYTNPPS 480
Query: 346 FMERTLRWRHLAPT 359
M+ L+ RHL PT
Sbjct: 481 IMKELLKRRHLCPT 494
>gi|45357571|ref|NP_987128.1| DNA polymerase II small subunit [Methanococcus maripaludis S2]
gi|45047131|emb|CAF29564.1| DNA polymerase, archaeal type II, small subunit [Methanococcus
maripaludis S2]
Length = 585
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 23/254 (9%)
Query: 120 LEDESG--RVKLGGAEL----LPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKE 172
LEDE+G RV L ++ LPS + V+ G G+ + +D + P+
Sbjct: 251 LEDENGTFRVLLMKDKMEKGDLPSDVLLDEVIGFEGTINDKGDLMFVDRAFRPDITPK-- 308
Query: 173 LPLNSGEDK-YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
P + ++K Y +S ++VGS F + + G + + E+ I + + ++ IAG
Sbjct: 309 -PTKTTDEKIYTAFLSDVHVGSREFLNKVFAKFIRFLNGEVNNGLEEKIVSRLKYISIAG 367
Query: 232 NSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+ ++ G+ GQ D + E+ L Q+ + + I PG +D + PQ
Sbjct: 368 DLVD-GVGIYPGQEYDLYDVD-IISQYAEVAAYLEQVPEHIKVIICPGNHDALRPAEPQP 425
Query: 292 PLNR---CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL---QKYSEANDQLE 345
+ LFP TF NP + + L G++ DD+ ++ +
Sbjct: 426 TFDESITSLFPKENV--TF--VGNPGVVNMHGLDLLMYHGRSFDDIIGQISSAQYTNPPS 481
Query: 346 FMERTLRWRHLAPT 359
M L+ RHL PT
Sbjct: 482 IMTELLKRRHLCPT 495
>gi|340623193|ref|YP_004741644.1| DNA polymerase II small subunit [Methanococcus maripaludis X1]
gi|339903459|gb|AEK18901.1| DNA polymerase II small subunit [Methanococcus maripaludis X1]
Length = 585
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 23/254 (9%)
Query: 120 LEDESG--RVKLGGAEL----LPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKE 172
LEDE+G RV L ++ LPS + V+ G G+ + +D + P+
Sbjct: 251 LEDENGTFRVLLMKDKMEKGDLPSDVLLDEVIGFEGTINDKGDLMFVDRAFRPDITPK-- 308
Query: 173 LPLNSGEDK-YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAG 231
P + ++K Y +S ++VGS F + + G + + E+ I + + ++ IAG
Sbjct: 309 -PTKTTDEKIYTAFLSDVHVGSREFLNKVFAKFIRFLNGEVNNGLEEKIVSRLKYISIAG 367
Query: 232 NSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
+ ++ G+ GQ D + E+ L Q+ + + I PG +D + PQ
Sbjct: 368 DLVD-GVGIYPGQEYDLYDVD-IISQYAEVAAYLEQVPEHIKVIICPGNHDALRPAEPQP 425
Query: 292 PLNR---CLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL---QKYSEANDQLE 345
+ LFP TF NP + + L G++ DD+ ++ +
Sbjct: 426 TFDESITSLFPKENV--TF--VGNPGVVNMHGLDLLMYHGRSFDDIIGQISSAQYTNPPS 481
Query: 346 FMERTLRWRHLAPT 359
M L+ RHL PT
Sbjct: 482 IMTELLKRRHLCPT 495
>gi|424812418|ref|ZP_18237658.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Candidatus Nanosalinarum sp. J07AB56]
gi|339756640|gb|EGQ40223.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Candidatus Nanosalinarum sp. J07AB56]
Length = 515
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 110/273 (40%), Gaps = 41/273 (15%)
Query: 161 DVLDAGLAPQKELPLNSG-----EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDE 215
D++ A +LP+ G ++ +S L++GS Q + GD
Sbjct: 228 DIVFANQVVHPDLPIPDGVNTTQQEVQAAYISDLHIGS--------QDTMHDALDRFGDW 279
Query: 216 KEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVP 273
A+ I ++VIAG+ +E G+ GQ L D R + +E ++ +
Sbjct: 280 LRSDEASNIGYLVIAGDIVE-GVGVYPGQEEELEITDVYRQYRRFEEW---AEKLPDRIE 335
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTS-----G 328
L I PG +D + PQ L F T++ NP L +R G G
Sbjct: 336 LIIGPGNHDVVRLAEPQPTLPEKAFDNIHTWDNVHLVQNPQTVRLHGIRSQGIKHLMYHG 395
Query: 329 QTIDD----LQKYSE-ANDQLEF-MERTLRWRHLAPTAPNTLGCYPFT--DRDPFLVESC 380
+ DD +++ E A DQ E+ ME L+ RH+AP + G P + D ++E
Sbjct: 396 MSYDDHVSRIKELRENAYDQPEYVMEDLLKRRHVAP----SYGSNPLSPEGTDAMVIEHE 451
Query: 381 PHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKF 413
P V+ +G+ KG V ++C F
Sbjct: 452 PDVFVSGHFHSHCDESYKG-----VNMICSSSF 479
>gi|150399955|ref|YP_001323722.1| DNA polymerase II small subunit [Methanococcus vannielii SB]
gi|150012658|gb|ABR55110.1| DNA-directed DNA polymerase [Methanococcus vannielii SB]
Length = 594
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 14/232 (6%)
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLD-VLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+P+ + V+A G G+ + +D + P K P +S E + +S +++GS
Sbjct: 277 VPNDILLDEVIAFEGTLNDKGDVMFVDKAFRPDITP-KNPPKSSEEKLFTAFLSDVHIGS 335
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253
F + + G + E+ I + + ++ IAG+ ++ G+ GQ D
Sbjct: 336 HEFMAKTFGKFIKFLNGDVSSGLEEKIVSRLKYISIAGDLVD-GVGIYPGQEYDLYDVD- 393
Query: 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC---LFPGSATYNTFRSC 310
+ KE L QI + + + PG +D + PQ + LFP
Sbjct: 394 IISQYKEFAAYLEQIPEHIKIIVSPGNHDALRPAEPQPAFDESITDLFPKE----NINFI 449
Query: 311 TNPHCFELDNVRFLGTSGQTIDDL---QKYSEANDQLEFMERTLRWRHLAPT 359
NP + + L G++ DD+ ++ D M L+ RHL PT
Sbjct: 450 GNPGLVNIHGLDLLLYHGRSFDDVIGQISSAQYTDPPSIMRELLKRRHLCPT 501
>gi|254166648|ref|ZP_04873502.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei
T469]
gi|254167396|ref|ZP_04874248.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei
T469]
gi|289596289|ref|YP_003482985.1| DNA-directed DNA polymerase [Aciduliprofundum boonei T469]
gi|197623659|gb|EDY36222.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei
T469]
gi|197624258|gb|EDY36819.1| Ser/Thr protein phosphatase family protein [Aciduliprofundum boonei
T469]
gi|289534076|gb|ADD08423.1| DNA-directed DNA polymerase [Aciduliprofundum boonei T469]
Length = 466
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 133/341 (39%), Gaps = 54/341 (15%)
Query: 120 LEDESGRVKLGG--AELLPSAYVTGIVVALHGKETSAGEFL-VLDVLDAGLAPQKELPLN 176
LED +GRVK E L + V G++ GK + V +++ G +N
Sbjct: 154 LEDPTGRVKCIAPQGEFLLNDEVIGVI----GKYNEESNLIYVNEIVRPGFRK-----IN 204
Query: 177 SG----EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN 232
G E V++S +++GS ++ +D + K AEIV +I G
Sbjct: 205 KGRVTEEQIGAVIISDVHIGSKMFLQKNWEKFLDWL-------KSGKNGAEIVKYLIIGG 257
Query: 233 SIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAA---GVPLDIMPGPNDPANFSLP 289
+ G+ Q +++ + + K+ + L + I + + ++PG +D + P
Sbjct: 258 DLVDGIGIYPNQ----EEELEILDIYKQYEALASYIQELPDYIKVIMIPGNHDLVRNAEP 313
Query: 290 QQPLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE- 345
Q PL R LF G+ + +NP F L +FL G I+DL + + +
Sbjct: 314 QPPLPSDVRALFNGNVEF-----LSNPTLFSLHGYKFLLYHGAAINDLVELIPGMNYEKI 368
Query: 346 --FMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQ 403
M L RHL P + P RD ++ P V+ G+ F K D
Sbjct: 369 GSIMRNMLEMRHLYPPYGGKVPIAPLK-RDFLAIDLVPDVFVTGHVHAFTYE--KYKDVH 425
Query: 404 LVRLVCI---PKFSET-------GVAVVVNLKNLECHTLSF 434
++ C K+ + G ++N E LSF
Sbjct: 426 IINASCWQAQTKYQKMMNFNPVPGKVALINFHTDEVKVLSF 466
>gi|150401589|ref|YP_001325355.1| DNA polymerase II small subunit [Methanococcus aeolicus Nankai-3]
gi|150014292|gb|ABR56743.1| DNA-directed DNA polymerase [Methanococcus aeolicus Nankai-3]
Length = 640
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 6/217 (2%)
Query: 174 PLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233
P + E Y +S +++GS F+ ++ + G + E+ I + + ++ IAG+
Sbjct: 364 PKSIDEKIYTAFLSDVHIGSYEFLEDSFKKFIELLNGDTKNGLEEKIVSRLKYISIAGDL 423
Query: 234 IEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
++ G+ GQ D + KE+ + QI + + I PG +D + PQ
Sbjct: 424 VD-GVGIYPGQEYDLYDVD-IISQYKEVATYIEQIPEHIDVIISPGNHDALRPAEPQPIF 481
Query: 294 NRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD-LQKYSEAN--DQLEFMERT 350
+ + N +NP + + FL G++ DD + + S A+ D M+
Sbjct: 482 PKRILDLFDGLNNVHFVSNPGFVNIHGLDFLLYHGRSFDDVIGQISSASYQDPTSIMKEL 541
Query: 351 LRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAG 387
L+ RHL PT P D ++ + P ++ G
Sbjct: 542 LKRRHLCPTYGGRCPIAP-EKEDYLVIHNEPDIFHTG 577
>gi|374636965|ref|ZP_09708497.1| DNA-directed DNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373557334|gb|EHP83770.1| DNA-directed DNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 570
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 115/277 (41%), Gaps = 35/277 (12%)
Query: 128 KLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDV-LDAGLAPQKELPLNSGEDKYVVLV 186
K+ EL P + V+ G G + D + + P++ P + E Y V +
Sbjct: 248 KIANGEL-PDDILLDEVIGFIGTINDKGNLMFADTAVRPDITPKE--PNRTDEQVYAVFL 304
Query: 187 SGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246
S ++VGS F ++ + G++ + E+ + + I ++ I+G+ L++G +
Sbjct: 305 SDIHVGSYEFMKDTFNKFIEFLNGNVNNGVEEKVVSRIKYISISGD-------LVDGVGI 357
Query: 247 ASKDQSRLFE-----PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQ----QPLNRCL 297
+ L+E +E+ + L QI + + I PG +D + PQ + + +
Sbjct: 358 YPGQEEDLYEIDIMSQYEEIALYLEQIPEHIHIIISPGNHDAVRPAEPQPKLPEKIAKLF 417
Query: 298 FPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTL 351
+ T+ NP + + FL G++ DD+ KY+E + M+ L
Sbjct: 418 NMDNVTF-----VGNPAIVNVHGLDFLLYHGRSFDDIVGQVPSAKYTEPS---TIMKELL 469
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
+ R L PT P +D ++E V+ G+
Sbjct: 470 KRRLLCPTYGGRCPIAP-EHKDYLVIEKDIDVFHTGH 505
>gi|167394646|ref|XP_001733543.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165894547|gb|EDR22515.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 232
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 8/188 (4%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++R + + F ++K Y +QY IYF RL +R LL V + IC V +
Sbjct: 1 MKRPEVNIVIEKTSFLMEKMEY-IEQYGTIYFDRLKRLRPLLEISVKKVDSN--ICIVEK 57
Query: 70 LE---EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPL-VKPHNFMHPDDHLVLEDESG 125
L +GR +IGTL+K K P++L++Y +S + +++ D LED +
Sbjct: 58 LSHIPQGR-VALIGTLFKKSKKIPTLLNQYKSIKSVDSISFNEDSYVDDSDTCYLEDITS 116
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVL 185
V L + + V+G +A+ G+ + F + +L P+ + S Y+ L
Sbjct: 117 HVNLIINKDQLAHIVSGTALAVIGELINDLSFEIKSILYPYDKPKPTKLIESETHCYIAL 176
Query: 186 VSGLNVGS 193
V+ + S
Sbjct: 177 VNDIQYSS 184
>gi|409730261|ref|ZP_11271842.1| DNA polymerase II small subunit [Halococcus hamelinensis 100A6]
gi|448722074|ref|ZP_21704614.1| DNA polymerase II small subunit [Halococcus hamelinensis 100A6]
gi|445790298|gb|EMA40965.1| DNA polymerase II small subunit [Halococcus hamelinensis 100A6]
Length = 527
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
VVA+ G G L +D L P+ P + L+S ++VGS ++
Sbjct: 236 VVAVEGTLAGDGGILFVDDLHFPDVPRNHRPSTADRHVRAALISDVHVGSQEFARDRWSA 295
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + AAEI +++IAG+ +E G+ Q+ D +++ +
Sbjct: 296 FADWL--------HTEAAAEIEYLLIAGDMVE-GVGVYPNQD-EELDIVDIYDQYERFSE 345
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ L T + R NP ++ V+
Sbjct: 346 YLKEVPGDMEVLMIPGNHDAVRLAEPQPGFTEELR-SIMTAHDARISGNPSMVTVEGVKI 404
Query: 324 LGTSGQTIDD-LQKYSEANDQLEF----MERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D+ + + EA E M + L+ RH+AP + P +RD +++
Sbjct: 405 LMYHGVSLDEVIAELPEAKASYEEPHKPMYQLLKKRHVAPQYGGHIRISP-EERDYLVMD 463
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 464 EIPDVFHTGHVHKL 477
>gi|308160893|gb|EFO63360.1| Hypothetical protein GLP15_3948 [Giardia lamblia P15]
Length = 450
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 136/372 (36%), Gaps = 40/372 (10%)
Query: 75 ECVIIGTLYKHMKLKPSILDEYSK--ERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA 132
+ I G L + K + S + Y E + P V + D +ED R++L
Sbjct: 67 DVTIFGLLVLNSKQRKSAVKTYRTLLEPTVQPPVA-EKLVTDGDTYYIEDGGIRIQLDLK 125
Query: 133 ELLPSAYVTGIVVALHGKETSAGEFLVLDVL-------DAGLAPQKELPLNSGEDKYVVL 185
V G V AL G + F + ++L L P +L +S + V+
Sbjct: 126 APSKITLVPGAVAALRGLFIAPDIFSIEELLYPVEVFATTPLQPSPDLWTDSVA-QLVLF 184
Query: 186 VSGLNVGSGTSNPLQFQLLVDHI-TGHLGDEKE--------QGIAAEIVHVVIAGNSIEI 236
V+G+++G S+ + L + T K+ + A GN++
Sbjct: 185 VAGMDLGWEASHAARAILFATALGTSPFSSIKQVVLCGGTYAPVDAGPAAAACLGNALSP 244
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRC 296
G L+ Q AS D +D +L +IAA P ++PG +DP PQ P+
Sbjct: 245 TTGFLDLQ--ASYDL---------VDTILARIAAARPTILVPGQSDPTPRLWPQAPVPSI 293
Query: 297 LFPGSATYNTFRSCTNP-HCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERT-LRWR 354
+ P + N+ S P D G + L + + + T L+
Sbjct: 294 VLPRCSLTNSLTSAPCPAKLLTKDKQLVWVIDGAVLTHLAALIPVSLSVPALVATLLQTA 353
Query: 355 HLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ------QKFETRLLKGSDRQLVRLV 408
HL P AP P D F++ P N + + + + ++
Sbjct: 354 HLCPQAPLFFDVQPL-QSDIFVLTEPPQYIVVSNHPQTITPEAYALEYDWNGVQCICKVF 412
Query: 409 CIPKFSETGVAV 420
CIP F+ TG A+
Sbjct: 413 CIPSFTSTGSAL 424
>gi|296109146|ref|YP_003616095.1| DNA-directed DNA polymerase [methanocaldococcus infernus ME]
gi|295433960|gb|ADG13131.1| DNA-directed DNA polymerase [Methanocaldococcus infernus ME]
Length = 560
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 86/189 (45%), Gaps = 10/189 (5%)
Query: 176 NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE 235
+ E+ Y+ +S ++VGS F+ ++ + G++ + E+ I + + ++ IAG+ ++
Sbjct: 284 KTKEELYMAFLSDIHVGSNEFLYKDFEKFIEFLNGNVKNSLEEKIVSRLKYICIAGDLVD 343
Query: 236 IPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPL 293
G+ GQ +L D + +E + + + QI + + I PG +D + PQ L
Sbjct: 344 -GIGVYPGQEEDLYEIDIMKQYEEVAK---YIEQIPEHIAIVISPGNHDAVRPAEPQPRL 399
Query: 294 NRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEFMERT 350
+ + N + NP + + L G++ DDL + + M+
Sbjct: 400 PKEIIKLFNRENIY-FVGNPCTLNIHGLDTLLYHGRSFDDLVSQIPTASYENPFTIMKEV 458
Query: 351 LRWRHLAPT 359
++ RHL+P
Sbjct: 459 IKRRHLSPV 467
>gi|448320720|ref|ZP_21510206.1| DNA polymerase II small subunit [Natronococcus amylolyticus DSM
10524]
gi|445605622|gb|ELY59544.1| DNA polymerase II small subunit [Natronococcus amylolyticus DSM
10524]
Length = 553
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
VVA+ G +D + P+ P + L+S ++VGS Q
Sbjct: 261 VVAMEGTLADDSGIAFVDSMYFPDVPRTHEPTTADRHVQAALISDVHVGS--------QE 312
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
+ D A + +++IAG+ +E G+ Q+ D ++E + +
Sbjct: 313 FMSEAWNRFADWLHTPEAQHVEYLLIAGDMVE-GVGVYPNQD-EELDVVDIYEQYEAFNE 370
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L Q+ + + ++PG +D + PQ + L G + + R +NP L+ V
Sbjct: 371 RLKQVPGDIEIVMIPGNHDAVRLAEPQPGFDEELR-GIMSAHDARIVSNPSTVTLEGVSV 429
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++ + +D M + L+ RH+AP P ++D ++E
Sbjct: 430 LMYHGVSLDEVIAELPEEKASYDDPHRAMYQLLKKRHVAPQFGGHTRLAP-EEKDYLIME 488
Query: 379 SCPHVYFAGNQQKF 392
P ++ G+ K
Sbjct: 489 EVPDIFHTGHVHKL 502
>gi|393797057|ref|ZP_10380421.1| DNA polymerase II small subunit, partial [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 367
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 18/165 (10%)
Query: 177 SGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236
S + Y V +S L++GS +F V ++ IA +I V+I G+
Sbjct: 212 SETETYAVFLSDLHIGSKYFMEEEFTEFVSWLSS------PDPIARKIRFVLIGGD---- 261
Query: 237 PRGLLNGQNLASKDQSRLF-----EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQ 291
L++G + L E +K+++ L+ ++ + + IMPG +DP +LPQ
Sbjct: 262 ---LVDGVGIYPNQDKELVCQTIEEQLKKVEELIDRVPNYIKIFIMPGNHDPGRRALPQP 318
Query: 292 PLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336
+ + G NP L+ V+ + GQ+IDD+ K
Sbjct: 319 AIPKKYNSGLWERENVFMVGNPAVVSLNGVKVMMFHGQSIDDIVK 363
>gi|355571744|ref|ZP_09042972.1| DNA-directed DNA polymerase [Methanolinea tarda NOBI-1]
gi|354825377|gb|EHF09607.1| DNA-directed DNA polymerase [Methanolinea tarda NOBI-1]
Length = 465
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 37/257 (14%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + G + G + + P P S + VL+S ++VGS T +
Sbjct: 179 VIGVRGTLSGDGRLFFAEQMFRPDIPLSHAPFRSEKPGQAVLISDVHVGSNTFLEETWNR 238
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKEL 261
D ++G +++ +++IAG+ ++ G+ Q+ L K+ ++E +
Sbjct: 239 FADWLSG-----------SDVSYLLIAGDLVD-GIGVYPNQDHELTIKN---IYEQYEVF 283
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT---NPHCFEL 318
+L + + + + I PG +D + PQ + P + N ++C NP L
Sbjct: 284 GSMLRDLPSRMKIIISPGNHDVVRQAEPQPAI-----PPEFSANFPKNCIMVENPAMVSL 338
Query: 319 DNVRFLGTSGQTIDD---LQKYSEANDQLEFMERTLRWRHLAPT----APNTLGCYPFTD 371
VR L G+++DD L + ++ M L+ RHLAPT P G
Sbjct: 339 QGVRVLMYHGRSLDDFISLIPGASYDNSAPVMAGMLQRRHLAPTYGKRTPIAAG-----K 393
Query: 372 RDPFLVESCPHVYFAGN 388
DP +++ P V G+
Sbjct: 394 EDPLIIDPIPEVLHTGH 410
>gi|261402761|ref|YP_003246985.1| DNA polymerase II small subunit [Methanocaldococcus vulcanius M7]
gi|261369754|gb|ACX72503.1| DNA-directed DNA polymerase [Methanocaldococcus vulcanius M7]
Length = 609
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 13/222 (5%)
Query: 144 VVALHGKETSAGEFLVLD-VLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
V+ + G + +G + +D ++ L P+ ++ E+ Y+ +S +++GS +F
Sbjct: 302 VIGVKGMVSKSGTSIYVDEIIRPALPPKTIKKID--EEIYMAFLSDIHIGSKEFLHKEFG 359
Query: 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKE 260
+ + G + +E E+ + + + ++ IAG+ ++ G+ GQ +L D + E +E
Sbjct: 360 KFIRFLNGDVDNELEEKVVSRLKYICIAGDLVD-GVGVYPGQEDDLYEVD---IIEQYRE 415
Query: 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDN 320
+ + L QI + + I PG +D + PQ L + N + NP +
Sbjct: 416 IAMYLEQIPEHISIIISPGNHDAVRPAEPQPKLPEKITKLFNRDNIY-FVGNPSTINIHG 474
Query: 321 VRFLGTSGQTIDDLQ---KYSEANDQLEFMERTLRWRHLAPT 359
L G++ DDL K + + + M+ ++ R L PT
Sbjct: 475 FDTLLYHGRSFDDLVGQIKNASYENPVTIMKELVKRRLLCPT 516
>gi|170290998|ref|YP_001737814.1| DNA polymerase II small subunit [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175078|gb|ACB08131.1| DNA-directed DNA polymerase [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 463
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 65/353 (18%)
Query: 117 HLVLEDESGRVKLGG---------AELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL 167
+V+EDESG V + AE P V G+ + L+ DV +
Sbjct: 140 RMVIEDESGTVNVVFRRDSRAWELAERTPLDSVIGVRGTYVNGKLYGESILLPDVKSDEV 199
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+ + + V++S ++VGS N F+ V + A ++ ++
Sbjct: 200 SEGRH-------EGRAVMISDVHVGSRYFNEWAFEKFVRWLRSE--------DARDVRYL 244
Query: 228 VIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI---LLTQIAAGVPLDIMPGPNDPA 284
+I G+ ++ G+ G +++ R+ + K+ + L++I +G+ + +PG ++P
Sbjct: 245 IICGDLVD---GI--GVYPNQEEELRISDVYKQFEYAGRFLSRIPSGIKVIYIPGNHEPV 299
Query: 285 NFSLPQQPLNRCLFPG--SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----S 338
+ PQ L A +N + NP ++ ++ L G++++ + K+
Sbjct: 300 RQAEPQPELQSDYLDILLDANHNIV-ALPNPSMVKIGSLSILLYHGRSLNAVMKHIPGLQ 358
Query: 339 EANDQ--LEFMERTLRWRHLAPTAPNTLGCYPFT--DRDPFLVESCPHVYFAGNQQKFET 394
N Q +E M LR R+L P G +P + +RD L+E+ P+++ G+ +
Sbjct: 359 PVNPQTVVEAMSWILRLRNLVP----IYGEHPISPEERDWLLIENPPNLFHTGHVHVYGV 414
Query: 395 RLLKGSDRQLVRLVC-------IPKFSETGVAV------VVNLKNLECHTLSF 434
D + V+LV P G+ V V+NL+NLE + F
Sbjct: 415 -----GDYRGVKLVNSGTFENETPYIRSLGIEVTVGKVPVLNLENLEIKIMDF 462
>gi|257386882|ref|YP_003176655.1| DNA-directed DNA polymerase [Halomicrobium mukohataei DSM 12286]
gi|257169189|gb|ACV46948.1| DNA-directed DNA polymerase [Halomicrobium mukohataei DSM 12286]
Length = 527
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 105/254 (41%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L +D L P+ P + L+S ++VGS Q
Sbjct: 235 VIAVDGTLADDGGILFVDSLHFPDIPRTHDPSTADRPVQAALISDVHVGS--------QE 286
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
+ D AA + ++++AG+ +E G+ Q+ D ++E +
Sbjct: 287 FMADAWHRFADWLHTEEAANVEYLLLAGDMVE-GVGVYPDQD-DELDVVDIYEQYERFSE 344
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L +I + + ++PG +D + PQ + L T + + +NP ++ V
Sbjct: 345 YLKEIPGDIEIRMIPGNHDAVRLAEPQPAFDEELR-DIMTAHDAQVHSNPALVTIEGVTV 403
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + ++ + M + L+ RH+AP P DRD ++E
Sbjct: 404 LMYHGVSLDEVIAELPDEKASYDEPHKAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 462
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 463 EVPDVFHTGHVHKL 476
>gi|219851074|ref|YP_002465506.1| DNA polymerase II small subunit [Methanosphaerula palustris E1-9c]
gi|219545333|gb|ACL15783.1| DNA-directed DNA polymerase [Methanosphaerula palustris E1-9c]
Length = 467
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 24/222 (10%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + G + G + L P P S VL+S ++VGS T P +
Sbjct: 179 VIGVRGTLSPEGTLFFGNQLIRPDIPMNHAPFLSKTPGRAVLISDVHVGSNTFLPEAW-- 236
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D L A++ +++IAG+ ++ G+ GQ Q+ ++E
Sbjct: 237 --DRFAAWLK-------TADVSYLLIAGDVVD-GIGVYPGQEQELVIQN-IYEQYNAFGE 285
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT---NPHCFELDN 320
+L ++ + + + PG +D + PQ L P T + +CT NP L
Sbjct: 286 MLAELPKRLKIVVSPGNHDVVRGAEPQPAL-----PDKFTGSFPENCTVVENPALISLQG 340
Query: 321 VRFLGTSGQTIDDLQKY---SEANDQLEFMERTLRWRHLAPT 359
VR L G++IDD+ + + + ME L+ RHLAP+
Sbjct: 341 VRVLMYHGRSIDDMISLIPGATYENPGQMMEEMLQRRHLAPS 382
>gi|385304640|gb|EIF48649.1| dna polymerase delta subunit [Dekkera bruxellensis AWRI1499]
Length = 170
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 78 IIGTLYKHMKLKPSILDEYSKERSTTPLVKP------------HNFMHP-DDHLVLEDES 124
+IGT++ MK KP+IL E + P K H++ P D ++LED+S
Sbjct: 35 VIGTVFMDMKYKPNILQEVTGNIYAAPEFKEDSEYDELERTRIHSYSDPATDQVMLEDDS 94
Query: 125 GRVKLGGAELLPSAYVTGIVVALHGKETSAGEF 157
GR+ L G L +TG+VV G + F
Sbjct: 95 GRLLLDGELLDKVVLMTGVVVGALGDDCGCWCF 127
>gi|448407025|ref|ZP_21573457.1| DNA polymerase II small subunit [Halosimplex carlsbadense 2-9-1]
gi|445676831|gb|ELZ29348.1| DNA polymerase II small subunit [Halosimplex carlsbadense 2-9-1]
Length = 539
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L +D L P+ P + D L+S ++VGS +
Sbjct: 247 VIAVDGTLADDGGILFVDSLYFPEIPRTYEPSTADRDVEAALISDVHVGSQEFEADAWHR 306
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + H D A + +++IAG+ +E G+ Q+ D ++E +
Sbjct: 307 FTDWL--HTAD------ADRVEYLLIAGDMVE-GVGVYPNQD-EELDIVDIYEQYERFSE 356
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L T + R NP ++ V
Sbjct: 357 YLKEVPGDMEIIMIPGNHDAVRLAEPQPAFDEDLR-DIMTAHDARISGNPSTVTVEGVDV 415
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + ++ + M + L+ RH+AP P + D ++E
Sbjct: 416 LMYHGVSLDEVIAELPDEKASYDEPHKPMYQLLKKRHVAPQFGGQTRLAP-EEEDYLVME 474
Query: 379 SCPHVYFAGNQQKF 392
S P ++ G+ K
Sbjct: 475 SVPDIFHTGHVHKL 488
>gi|424813581|ref|ZP_18238769.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Candidatus Nanosalina sp. J07AB43]
gi|339758527|gb|EGQ43782.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Candidatus Nanosalina sp. J07AB43]
Length = 395
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 32/257 (12%)
Query: 161 DVLDAGLAPQKELPLNSG-----EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDE 215
D++ A + +LP+ G ++ +S L++GS + L +L D LG +
Sbjct: 110 DIIYADSVIRPDLPIPDGVKTTKDEVKAAYISDLHIGS--EDTLHDRL--DRFADWLGTK 165
Query: 216 KEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKELDILLTQIAAGVP 273
A+++ ++V+ G+ +E G+ GQ L D + +E +E + ++ +
Sbjct: 166 D----ASDVGYLVMPGDVVE-GVGVYPGQENELDVNDIYKQYEMFEEW---IQKVPEDIQ 217
Query: 274 LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSG----- 328
+ I PG +D + PQ LN + + Y+ NP L +R G
Sbjct: 218 IIIGPGNHDIVRLAEPQPKLNENVLERATEYSNVHLVNNPQMVRLHGIRSKGIKNLMYHG 277
Query: 329 ----QTIDDLQKYSEA--NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPH 382
+ ID +++ E + M L+ RHLAPT + L P + D ++E P
Sbjct: 278 HSFDEQIDAIKELRENAYEEPYRVMVDLLKRRHLAPTYGSNL-LSPEAE-DHLVIEEKPD 335
Query: 383 VYFAGNQQKFETRLLKG 399
V+ +G+ KG
Sbjct: 336 VFVSGHLHSHSNYSYKG 352
>gi|13542203|ref|NP_111891.1| DNA polymerase II small subunit [Thermoplasma volcanium GSS1]
Length = 464
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 26/229 (11%)
Query: 169 PQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
P + L E +V +S +++GS T +FQ ++ E + +++
Sbjct: 194 PYRILDETKHEPVFVASLSDIHIGSKTFRKNEFQDMIKWF------ESSDDTSLSTKYLI 247
Query: 229 IAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL---LTQIAAGVPLDIMPGPNDPAN 285
++G+ ++ G+ GQ ++ L P+ + + L ++QI + + IMPG +D
Sbjct: 248 LSGDVVD-GIGVYPGQ----ENDLELLNPLDQYEALASFVSQIPEDITVFIMPGNHDTVR 302
Query: 286 FSLPQQPLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL-QKYSEAN 341
S PQ R +FP +A + NP+ +L+ L G +++D+ + AN
Sbjct: 303 LSEPQPVFPEKIRKMFPSNAVF-----LPNPYNLKLEGKNVLVYHGMSLNDMIELIPGAN 357
Query: 342 -DQL-EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
D + + +E L RHL+P P + D ++E P ++ G+
Sbjct: 358 YDSIGKAIEAILVRRHLSPRYGGNTPLIP-SSVDYHVIEEVPDIFITGH 405
>gi|14325637|dbj|BAB60540.1| archaeal DNA polymerase II subunit 1 [Thermoplasma volcanium GSS1]
Length = 466
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 26/229 (11%)
Query: 169 PQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
P + L E +V +S +++GS T +FQ ++ E + +++
Sbjct: 196 PYRILDETKHEPVFVASLSDIHIGSKTFRKNEFQDMIKWF------ESSDDTSLSTKYLI 249
Query: 229 IAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL---LTQIAAGVPLDIMPGPNDPAN 285
++G+ ++ G+ GQ ++ L P+ + + L ++QI + + IMPG +D
Sbjct: 250 LSGDVVD-GIGVYPGQ----ENDLELLNPLDQYEALASFVSQIPEDITVFIMPGNHDTVR 304
Query: 286 FSLPQQPLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL-QKYSEAN 341
S PQ R +FP +A + NP+ +L+ L G +++D+ + AN
Sbjct: 305 LSEPQPVFPEKIRKMFPSNAVF-----LPNPYNLKLEGKNVLVYHGMSLNDMIELIPGAN 359
Query: 342 -DQL-EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
D + + +E L RHL+P P + D ++E P ++ G+
Sbjct: 360 YDSIGKAIEAILVRRHLSPRYGGNTPLIP-SSVDYHVIEEVPDIFITGH 407
>gi|284161515|ref|YP_003400138.1| DNA-directed DNA polymerase [Archaeoglobus profundus DSM 5631]
gi|284011512|gb|ADB57465.1| DNA-directed DNA polymerase [Archaeoglobus profundus DSM 5631]
Length = 479
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 26/248 (10%)
Query: 164 DAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAE 223
D + P + + +D +V +S + GS ++++ ++G +G+EK +A++
Sbjct: 203 DRIIFPDIPMRERAKKDFGIVFISDTHFGSKEFLEKEWEVFTKWLSGEVGNEKVVDLASK 262
Query: 224 IVHVVIAGNSIE---IPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGP 280
I +VVIAG+ ++ + GL N +L D ++ E L +I V + + G
Sbjct: 263 IKYVVIAGDIVDGVGVYPGLEN--DLTITDIYGQYQYAAE---QLDKIPKDVKVILSVGN 317
Query: 281 NDPANFSLPQQPLN---RCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL--- 334
+D + PQ L R LF + + NP +LD ++ L G+++DD+
Sbjct: 318 HDAIRQAEPQPALPKEIRDLFSNNVIH-----VGNPAHVDLDGLKVLIYHGRSLDDVITK 372
Query: 335 ---QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQK 391
Y + + E M L+ RHL P P + D +++ P V G+
Sbjct: 373 IPRLSYEKPH---EAMIELLKRRHLCPIYGGKTPIAPERE-DWLVIDEVPDVLHCGHVHT 428
Query: 392 FETRLLKG 399
+ +G
Sbjct: 429 YGVGFYRG 436
>gi|448732304|ref|ZP_21714585.1| DNA polymerase II small subunit [Halococcus salifodinae DSM 8989]
gi|445804877|gb|EMA55107.1| DNA polymerase II small subunit [Halococcus salifodinae DSM 8989]
Length = 527
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
+VA+ G G L +D L P+ P + L+S ++VGS +
Sbjct: 236 LVAVEGTLAGDGGILFVDELHFPDVPRTYRPSTADRHVRAALISDVHVGSQEFAADAWSA 295
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + H D AA + ++++AG+ +E G+ Q+ D ++E +
Sbjct: 296 FADWL--HTED------AAAVEYLLVAGDMVE-GVGVYPNQD-EELDIVDIYEQYEAFSE 345
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + + PG +D + PQ + L + ++ S NP ++ V
Sbjct: 346 RLKEVPGDMEILLTPGNHDAVRLAEPQPGFDEELREIMSVHDAHFSG-NPSTVTIEGVTI 404
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++ + ++ + M + L+ RH+AP P +RD ++E
Sbjct: 405 LMYHGVSLDEVIAELPEEKANYDEPHKAMYQLLKKRHIAPQYGGHTRLAP-EERDYLVIE 463
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 464 EIPDVFHTGHVHKL 477
>gi|448737958|ref|ZP_21719989.1| DNA polymerase II small subunit [Halococcus thailandensis JCM
13552]
gi|445802542|gb|EMA52846.1| DNA polymerase II small subunit [Halococcus thailandensis JCM
13552]
Length = 516
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L +D L P+ P + L+S ++VGS +
Sbjct: 224 VIAVEGTLAGDGGILFVDDLHFPDVPRTYTPSTADRHVRAALISDVHVGSQEFAADAWSA 283
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + E+ A E ++++AG+ +E G+ Q+ D ++E ++
Sbjct: 284 FADWL------HTEEASAVE--YLLVAGDMVE-GVGVYPNQD-EELDIVDIYEQYEQFSE 333
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L ++ R NP ++ V
Sbjct: 334 YLKEVPGDMEILLIPGNHDAVRLAEPQPGFDDDLREIMDVHDA-RISGNPSTVTIEGVSI 392
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++ + ++ + M + L+ RH+AP P +RD ++E
Sbjct: 393 LMYHGVSLDEVIAELPEEKASYDEPHKPMYQLLKKRHVAPQYGGHTRIAP-EERDYLVME 451
Query: 379 SCPHVYFAGNQQKF 392
P ++ G+ K
Sbjct: 452 EVPDIFHTGHVHKL 465
>gi|448731324|ref|ZP_21713624.1| DNA polymerase II small subunit [Halococcus saccharolyticus DSM
5350]
gi|445792077|gb|EMA42689.1| DNA polymerase II small subunit [Halococcus saccharolyticus DSM
5350]
Length = 531
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
+VA+ G G L +D L P+ P + L+S ++VGS +
Sbjct: 240 LVAVEGTLAGDGGILFVDELHFPDVPRTYRPSTADRHVRAALISDVHVGSQEFAADAWSA 299
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + H D AA + ++++AG+ +E G+ Q+ D ++E +
Sbjct: 300 FADWL--HTED------AAAVEYLLVAGDMVE-GVGVYPDQD-EELDIVDIYEQYEAFAE 349
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L + ++ R NP ++ V
Sbjct: 350 RLKEVPGDMEILLIPGNHDAVRLAEPQPGFDEELRNIMSAHDA-RFSGNPSTVTIEGVTI 408
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++ + ++ + M + L+ RH+AP P +RD ++E
Sbjct: 409 LMYHGVSLDEVIAELPEEKANYDEPHKAMYQLLKKRHIAPQYGGHTRLAP-EERDYLVME 467
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 468 EIPDVFHTGHVHKL 481
>gi|269986148|gb|EEZ92461.1| DNA-directed DNA polymerase [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 478
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 24/270 (8%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
VV + G++ + F V D++ + KE +D +++ +S ++VGS F+
Sbjct: 163 VVIISGRKYNDAIF-VKDIVFPDIQ-MKEKVKQEMDDAFILFLSDIHVGSKLFVEDAFEK 220
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKEL 261
+ I G + ++ IA + +V+ G+ I+ G+ Q LA D ++ +
Sbjct: 221 FIKWINGEI--QEYSDIAKLVKFIVLNGDLID-GIGVYPDQEKELAITDLKGQYDKLYSF 277
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFEL--- 318
L +I + + + G +D + + PQ L++ +NP+ L
Sbjct: 278 ---LDRIPKNIKIILSQGNHDATHIAEPQPKLDKVFAENLYKLKNAVFLSNPYQVNLIVG 334
Query: 319 -DNVRFLGTSGQTI----DDLQKYS--EANDQLEFMERTLRWRHLAPTAPNT-LGCYPFT 370
+ L G +I + + KY+ +A D M+ L+ RHLAP+ +T L P
Sbjct: 335 KSTINLLSYHGFSITYYANKIPKYTKMDAEDIENIMKIQLKSRHLAPSHGSTQLMPLP-- 392
Query: 371 DRDPFLVESCPHVYFAGNQQKFETRLLKGS 400
+D ++E P +Y G+ K + KG+
Sbjct: 393 -KDYLVIEETPDIYATGHIHKTLASIYKGT 421
>gi|435845427|ref|YP_007307677.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Natronococcus occultus SP4]
gi|433671695|gb|AGB35887.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Natronococcus occultus SP4]
Length = 527
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 106/255 (41%), Gaps = 19/255 (7%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G +D + P+ P + L+S ++VGS +
Sbjct: 235 VLAMEGTLADDSGIAFVDAMYFPDVPRTHEPSTADRHVQAALISDVHVGSQEFMSAAWNR 294
Query: 204 LVDHI-TGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262
D + T H A + +++IAG+ +E G+ Q+ D ++E + +
Sbjct: 295 FADWLHTPH---------AQHVEYLLIAGDMVE-GVGVYPNQD-EELDIIDIYEQYEVFN 343
Query: 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVR 322
L Q+ + + ++PG +D + PQ + L + ++ R +NP ++ V
Sbjct: 344 ERLKQVPGDIEIVMIPGNHDAVRLAEPQPGFDDELREIMSAHDA-RIVSNPSTVTIEGVS 402
Query: 323 FLGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
L G ++D++ +K + +D M + L+ RH+AP P ++D ++
Sbjct: 403 VLMYHGVSLDEVIAELPEKKASYDDPHRAMYQLLKKRHVAPQFGGHTRLAP-EEKDYLIM 461
Query: 378 ESCPHVYFAGNQQKF 392
E P ++ G+ K
Sbjct: 462 EEVPDIFHTGHVHKL 476
>gi|448726700|ref|ZP_21709092.1| DNA polymerase II small subunit [Halococcus morrhuae DSM 1307]
gi|445793746|gb|EMA44317.1| DNA polymerase II small subunit [Halococcus morrhuae DSM 1307]
Length = 516
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L +D L P+ P + L+S ++VGS +
Sbjct: 224 VIAVEGTLAGDGGILFVDDLHFPDVPRTYTPSTADRHVRAALISDVHVGSQEFAADAWSA 283
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + E+ A E ++++AG+ +E G+ Q+ D ++E ++
Sbjct: 284 FADWL------HTEEASAVE--YLLVAGDMVE-GVGVYPNQD-EELDIVDIYEQYEQFAE 333
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L ++ R NP ++ V
Sbjct: 334 YLKEVPGDMEILLIPGNHDAVRLAEPQPGFDDDLREIMDVHDA-RISGNPSTVTIEGVSI 392
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++ + ++ + M + L+ RH+AP P +RD ++E
Sbjct: 393 LMYHGVSLDEVIAELPEEKASYDEPHKPMYQLLKKRHVAPQYGGHTRIAP-EERDYLVME 451
Query: 379 SCPHVYFAGNQQKF 392
P ++ G+ K
Sbjct: 452 EVPDIFHTGHVHKL 465
>gi|448302368|ref|ZP_21492350.1| DNA polymerase II small subunit [Natronorubrum tibetense GA33]
gi|445581597|gb|ELY35949.1| DNA polymerase II small subunit [Natronorubrum tibetense GA33]
Length = 522
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 17/229 (7%)
Query: 169 PQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
P+ P + L+S ++VGS Q + D A + +++
Sbjct: 255 PRTHKPSTADRHVQAALISDVHVGS--------QEFMHDAWNAFADWLHTAEAQHVEYLL 306
Query: 229 IAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSL 288
IAG+ +E G+ Q+ D ++E + + L Q+ + + ++PG +D +
Sbjct: 307 IAGDMVE-GVGVYPNQD-EELDVVDIYEQYEVFNEYLKQVPGDIEIVMIPGNHDAVRLAE 364
Query: 289 PQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL-----QKYSEANDQ 343
PQ + L + +++ R +NP L+ V L G ++D++ ++ + +D
Sbjct: 365 PQPGFDENLREIMSAHDS-RIVSNPSTVTLEGVSVLMYHGVSLDEVIAELPEEKASYDDP 423
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKF 392
+ M L+ RH+AP P + D ++E P ++ G+ K
Sbjct: 424 HKAMFHLLKKRHVAPQFGGHTRLAP-EEEDYLVMEEVPDIFHTGHVHKL 471
>gi|55379338|ref|YP_137188.1| DNA polymerase II small subunit [Haloarcula marismortui ATCC 43049]
gi|55232063|gb|AAV47482.1| DNA polymerase II small subunit [Haloarcula marismortui ATCC 43049]
Length = 392
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 104/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 100 VIAVEGTLADDAGILFVDSLYFPDVPRTHNPSTADRHVQAALISDVHVGS--------QE 151
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 152 FMEDAWHRFTDWLHTPEAEHVEYLLIAGDMVE-GVGIYPEQD-KELDIIDIYDQYRAFSE 209
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ A + + ++PG +D + PQ + L + ++ + +NP ++ V
Sbjct: 210 YLKEVPADMEIRMIPGNHDAVRLAEPQPGFDEELRDIMSAHDA-QVHSNPSLVTVEGVTV 268
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + M + L+ RH+AP P DRD ++E
Sbjct: 269 LMYHGVSLDEVIAELPDEEASYEEPHRAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 327
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 328 EVPDVFHTGHVHKL 341
>gi|338532559|ref|YP_004665893.1| lanthionine synthetase C family protein [Myxococcus fulvus HW-1]
gi|337258655|gb|AEI64815.1| lanthionine synthetase C family protein [Myxococcus fulvus HW-1]
Length = 1065
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
+ +L ET G L VL +GL PQ P +D V S L G G PL +
Sbjct: 390 LAASLQNLETQPGAVLNGTVLKSGLLPQ---PAWRSKDGTEVDFSALGAGEGQLTPLGYL 446
Query: 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP----RGLLNGQNLASKDQS-RLFEP 257
+ H T L E+ + +EIP R L GQ+L+ DQ+ L
Sbjct: 447 VATAHGTDQLRFERRR---------------MEIPGAANRPRLEGQDLSVPDQADALARG 491
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDP-ANFSLPQQPLNRCLFPGSATYNT-FRSCTNPHC 315
L LLT+ D + P P A F P+ R LF G+A+Y+ +PH
Sbjct: 492 FSTLYRLLTEHR-----DALLAPEGPLAAFE--DAPV-RVLFRGTASYDALLHESMHPHA 543
Query: 316 F--ELDNVRFL 324
LD RF
Sbjct: 544 MGDALDRQRFF 554
>gi|16081371|ref|NP_393700.1| DNA polymerase II small subunit [Thermoplasma acidophilum DSM 1728]
gi|13431473|sp|Q9HLK5.1|DP2S_THEAC RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|10639366|emb|CAC11368.1| DNA polymerase II (PolB), small chain related protein [Thermoplasma
acidophilum]
Length = 488
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 28/217 (12%)
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLL 241
YV +S ++VGS T +F+ +V I+G D A+ + +++++G+ ++ G+
Sbjct: 232 YVASISDIHVGSKTFRKNEFEAMVRWISGSDPD------ASRVKYLILSGDVVD---GI- 281
Query: 242 NGQNLASKDQSRLFEPIKELDIL---LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
G ++ + P+++ L L + V + +MPG +D S PQ +F
Sbjct: 282 -GVYPDQENDLEILNPLEQYANLAEYLVDVPEDVKVFVMPGNHDTVRLSEPQP-----VF 335
Query: 299 PGSATYNTFRSCT----NPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEFMERTL 351
PG + F NP+ +L+ L G +++D+ + + + + +E L
Sbjct: 336 PGKIR-DLFEPNVAFLPNPYNLKLEGKNVLVYHGMSLNDMIELIPGANYDSIGKAIEAIL 394
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
RHL+P P + D ++E P ++ G+
Sbjct: 395 VRRHLSPKYGGNTPMIP-SAVDYHVIEEVPDIFITGH 430
>gi|48477541|ref|YP_023247.1| DNA polymerase II small subunit [Picrophilus torridus DSM 9790]
gi|48430189|gb|AAT43054.1| DNA polymerase II small subunit [Picrophilus torridus DSM 9790]
Length = 466
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 115/269 (42%), Gaps = 36/269 (13%)
Query: 133 ELLPSAYVTGIV--VALHGKETS--AGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSG 188
EL+ V GI+ ++ G++T A E + D+ P+K + + E Y+ +S
Sbjct: 165 ELILEDEVIGIIGSISRTGRDTVMFADEIIRPDI------PRKMIYEDKKEPVYIASISD 218
Query: 189 LNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLAS 248
++VGS T FQ L+ I + A + +++++G+ ++ G+ GQ
Sbjct: 219 IHVGSRTFRKNDFQKLISWIKSSRNE------AQYLKYLILSGDVVD-GIGVYPGQ---E 268
Query: 249 KDQSRL--FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYN- 305
D L FE ++L L ++ + + + PG +D + PQ ++ + S +N
Sbjct: 269 NDIEILNPFEQYEKLAEYLNELPDDIDIFLTPGNHDNVRLAEPQPVFSKKI---SDFFNK 325
Query: 306 TFRSCTNPHCFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAPT 359
NP E++ L G +++D+ Y+ + E L+ RHLAP
Sbjct: 326 NVHLIPNPFNIEINGKNVLIYHGMSLNDMIELVPGANYASVGSAI---EELLKRRHLAPV 382
Query: 360 APNTLGCYPFTDRDPFLVESCPHVYFAGN 388
P + D ++E P ++ G+
Sbjct: 383 YGGKTPIIP-SKVDYHVIEKIPDIFITGH 410
>gi|448573735|ref|ZP_21641218.1| DNA polymerase II small subunit [Haloferax lucentense DSM 14919]
gi|445718641|gb|ELZ70331.1| DNA polymerase II small subunit [Haloferax lucentense DSM 14919]
Length = 533
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 242 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 293
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D AA I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 294 MADAWNRFADWLHTEEAARIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYEAFSEH 351
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 352 LKSVPGDLEIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMVTLEGVNVL 410
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 411 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 466
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 467 MEDVPDIFHTGHVHKL 482
>gi|448544230|ref|ZP_21625543.1| DNA polymerase II small subunit [Haloferax sp. ATCC BAA-646]
gi|448551242|ref|ZP_21629384.1| DNA polymerase II small subunit [Haloferax sp. ATCC BAA-645]
gi|448558265|ref|ZP_21632939.1| DNA polymerase II small subunit [Haloferax sp. ATCC BAA-644]
gi|445705734|gb|ELZ57627.1| DNA polymerase II small subunit [Haloferax sp. ATCC BAA-646]
gi|445710798|gb|ELZ62596.1| DNA polymerase II small subunit [Haloferax sp. ATCC BAA-645]
gi|445713153|gb|ELZ64932.1| DNA polymerase II small subunit [Haloferax sp. ATCC BAA-644]
Length = 533
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 242 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 293
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D AA I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 294 MADAWNRFADWLHTEEAARIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYEAFSEH 351
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 352 LKSVPGDLEIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMVTLEGVNVL 410
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 411 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 466
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 467 MEDVPDIFHTGHVHKL 482
>gi|300122139|emb|CBK22713.2| unnamed protein product [Blastocystis hominis]
Length = 122
Score = 42.4 bits (98), Expect = 0.53, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 58 WKPHLPICT-VLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVK----PHNFM 112
W +PI + ++ +C+IIGT+YK + L SIL+E L+ P N +
Sbjct: 13 WGDTIPIVEEIRNVKCQEDCIIIGTIYKDLSLFKSILNEKVSSAFNPQLIGTQFLPKNSL 72
Query: 113 H-----PDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGK 150
H D ++LED + R+ + + VTG+V+A+ G+
Sbjct: 73 HGPLSQEGDPIILEDSTTRIMI---KDFKDPIVTGVVMAIRGE 112
>gi|433431895|ref|ZP_20407702.1| DNA polymerase II small subunit, partial [Haloferax sp. BAB2207]
gi|432193799|gb|ELK50487.1| DNA polymerase II small subunit, partial [Haloferax sp. BAB2207]
Length = 453
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 171 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 222
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D AA I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 223 MADAWNRFADWLHTEEAARIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYEAFSEH 280
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 281 LKSVPGDLEIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMVTLEGVNVL 339
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 340 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 395
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 396 MEDVPDIFHTGHVHKL 411
>gi|448597885|ref|ZP_21654810.1| DNA polymerase II small subunit [Haloferax alexandrinus JCM 10717]
gi|445739346|gb|ELZ90855.1| DNA polymerase II small subunit [Haloferax alexandrinus JCM 10717]
Length = 533
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 102/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 242 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 293
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D AA I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 294 MADAWNRFADWLHTEEAARIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYEAFSEH 351
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 352 LKSVPGDLEIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMVTLEGVNVL 410
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 411 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 466
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 467 MEDVPDIFHTGHVHKL 482
>gi|433637031|ref|YP_007282791.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Halovivax ruber XH-70]
gi|433288835|gb|AGB14658.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Halovivax ruber XH-70]
Length = 536
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G +D + + P+ P + L+S ++VGS +
Sbjct: 244 VIAMEGTLADDSGIAFVDSMYSPDVPRTHEPKTADRHVEAALISDVHVGSD-------EF 296
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
+ D D A + ++ IAG+ +E G+ Q+ D ++E + +
Sbjct: 297 MAD-AWNDFADWLHTEEAQHVEYLCIAGDMVE-GVGVYPNQD-EELDIIDIYEQYEAFNE 353
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ N L + ++ + +NP E++ V
Sbjct: 354 YLKRVPGDLDIVMIPGNHDAVRLAEPQPGFNEELRSIMSAHDP-QIVSNPSTVEIEGVSI 412
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + ++ + M + L+ RH+AP P ++D ++E
Sbjct: 413 LMYHGVSLDEVIAELPSEKASYDEPHKAMYQLLKKRHVAPQFGGHTRLAP-EEKDHLVME 471
Query: 379 SCPHVYFAGNQQKF 392
S P ++ G+ K
Sbjct: 472 SVPDIFHTGHVHKL 485
>gi|448638559|ref|ZP_21676409.1| DNA polymerase II small subunit [Haloarcula sinaiiensis ATCC 33800]
gi|445763338|gb|EMA14537.1| DNA polymerase II small subunit [Haloarcula sinaiiensis ATCC 33800]
Length = 522
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 104/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 230 VIAVEGTLADDAGILFVDSLYFPDVPRTHSPSTADRHVQAALISDVHVGS--------QE 281
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 282 FMEDAWHRFTDWLHTPEAEHVEYLLIAGDMVE-GVGIYPEQD-KELDIIDIYDQYRAFSE 339
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ A + + ++PG +D + PQ + L + ++ + +NP ++ V
Sbjct: 340 YLKEVPADMEIRMIPGNHDAVRLAEPQPGFDEELRDIMSAHDA-QVHSNPSLVTVEGVTV 398
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + M + L+ RH+AP P DRD ++E
Sbjct: 399 LMYHGVSLDEVIAELPDEEASYEEPHRAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 457
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 458 EVPDVFHTGHVHKL 471
>gi|15791200|ref|NP_281024.1| DNA polymerase II small subunit [Halobacterium sp. NRC-1]
gi|10581822|gb|AAG20504.1| DNA polymerase type II small chain [Halobacterium sp. NRC-1]
Length = 392
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L D + P+ P + L+S ++VGS ++
Sbjct: 100 VIAVSGTLADDGTILFADDIYFPEVPRTYSPSTADRSVQAALISDVHVGSQEFAADAWRS 159
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + A + +++IAG+ +E G+ GQ+ D +++ +
Sbjct: 160 FADWL--------HTPAAESVEYLLIAGDMVE-GVGVYPGQD-EELDIVDIYDQYETFAE 209
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L + + + ++PG +D + PQ + L ++ R +NP +D V
Sbjct: 210 HLKDVPGDMEIVMIPGNHDAVRLAEPQPAFDEELRSIMRAHDA-RITSNPSTVTIDGVSV 268
Query: 324 LGTSGQTIDDLQKYSEANDQL-----EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++D ME L+ RH+AP P + D ++
Sbjct: 269 LLYHGVSLDEVIAEHPSDDVTYDDPQNAMELLLKKRHVAPPFGGRTRLAPEAE-DHLAID 327
Query: 379 SCPHVYFAGNQQKF 392
+ P V+ G+ K
Sbjct: 328 TVPDVFHTGHVHKL 341
>gi|448655335|ref|ZP_21682187.1| DNA polymerase II small subunit [Haloarcula californiae ATCC 33799]
gi|445765784|gb|EMA16922.1| DNA polymerase II small subunit [Haloarcula californiae ATCC 33799]
Length = 522
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 104/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 230 VIAVEGTLADDAGILFVDSLYFPDVPRTHSPSTADRHVQAALISDVHVGS--------QE 281
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 282 FMEDAWHRFTDWLHTPEAEHVEYLLIAGDMVE-GVGIYPEQD-KELDIIDIYDQYRAFSE 339
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ A + + ++PG +D + PQ + L + ++ + +NP ++ V
Sbjct: 340 YLKEVPADMEIRMIPGNHDAVRLAEPQPGFDEELRDIMSAHDA-QVHSNPSLVTVEGVTV 398
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + M + L+ RH+AP P DRD ++E
Sbjct: 399 LMYHGVSLDEVIAELPDEEASYEEPHRAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 457
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 458 EVPDVFHTGHVHKL 471
>gi|448683600|ref|ZP_21692317.1| DNA polymerase II small subunit [Haloarcula japonica DSM 6131]
gi|445783739|gb|EMA34564.1| DNA polymerase II small subunit [Haloarcula japonica DSM 6131]
Length = 522
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 103/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 230 VIAVEGTLADDAGILFVDSLYFPDVPRTHSPSTADRHVQAALISDVHVGS--------QE 281
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 282 FMEDAWHRFTDWLHTAEAENVEYLLIAGDMVE-GVGIYPEQD-EELDIIDIYDQYRAFSE 339
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L T + + +NP ++ V
Sbjct: 340 YLKEVPGDMEIRMIPGNHDAVRLAEPQPGFDEELR-DIMTAHDAQVHSNPSLVTVEGVTV 398
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + + M + L+ RH+AP P DRD ++E
Sbjct: 399 LMYHGVSLDEVIAELPDEEASYEEPHKAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 457
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 458 EVPDVFHTGHVHKL 471
>gi|448582926|ref|ZP_21646405.1| DNA polymerase II small subunit [Haloferax gibbonsii ATCC 33959]
gi|445730380|gb|ELZ81969.1| DNA polymerase II small subunit [Haloferax gibbonsii ATCC 33959]
Length = 530
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 239 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 290
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D A I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 291 MADAWNRFADWLHTEEAERIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYESFSEH 348
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 349 LKSVPGDLDIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMITLEGVNVL 407
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 408 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 463
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 464 MEDVPDIFHTGHVHKL 479
>gi|448680076|ref|ZP_21690515.1| DNA polymerase II small subunit [Haloarcula argentinensis DSM
12282]
gi|445769724|gb|EMA20797.1| DNA polymerase II small subunit [Haloarcula argentinensis DSM
12282]
Length = 522
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 230 VIAVEGTLADDAGILFVDSLYFPDVPRTHSPSTADRHVQAALISDVHVGS--------QE 281
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 282 FMEDAWHRFTDWLHTAEAETVEYLLIAGDMVE-GVGIYPEQD-EELDIIDIYDQYRAFSE 339
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L + ++ + +NP ++ V
Sbjct: 340 YLKEVPGDMEIRMIPGNHDAVRLAEPQPGFDEELRDIMSAHDA-QVHSNPSLVTVEGVTV 398
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + + M + L+ RH+AP P DRD ++E
Sbjct: 399 LMYHGVSLDEVIAELPDEEASYEEPHKAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 457
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 458 EVPDVFHTGHVHKL 471
>gi|448307259|ref|ZP_21497159.1| DNA polymerase II small subunit [Natronorubrum bangense JCM 10635]
gi|445596237|gb|ELY50330.1| DNA polymerase II small subunit [Natronorubrum bangense JCM 10635]
Length = 522
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 17/229 (7%)
Query: 169 PQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVV 228
P+ P + L+S ++VGS Q + D A + +++
Sbjct: 255 PRTHEPSTADRHVQAALISDVHVGS--------QEFMHDAWNRFTDWLHTKQAQHVEYLL 306
Query: 229 IAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSL 288
IAG+ +E G+ Q+ D ++E + + L Q+ + + ++PG +D +
Sbjct: 307 IAGDMVE-GVGIYPNQD-EELDIIDIYEQYEVFNEYLKQVPGDIEIVMIPGNHDAVRLAE 364
Query: 289 PQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL-----QKYSEANDQ 343
PQ N L + ++ R +NP L+ V L G ++D++ ++ + +
Sbjct: 365 PQPGFNEDLRTIMSAHDP-RIVSNPSTVTLEGVSVLMYHGVSLDEVIAELPEEKASYEEP 423
Query: 344 LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKF 392
+ M + L+ RH+AP P ++D ++E P ++ G+ K
Sbjct: 424 HKAMYQLLKKRHVAPQFGGHTRLAP-EEQDYLIMEDVPDIFHTGHVHKL 471
>gi|448376111|ref|ZP_21559395.1| DNA polymerase II small subunit [Halovivax asiaticus JCM 14624]
gi|445658129|gb|ELZ10952.1| DNA polymerase II small subunit [Halovivax asiaticus JCM 14624]
Length = 536
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/254 (19%), Positives = 107/254 (42%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G +D + + P+ P + L+S ++VGS +
Sbjct: 244 VIAMEGTLADDSGIAFVDSMYSPDVPRTHEPKTADRHVEAALISDVHVGSE-------EF 296
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
+ D D A + ++ IAG+ +E G+ Q+ D ++E + +
Sbjct: 297 MAD-AWNDFADWLHTEEAQHVEYLCIAGDMVE-GVGVYPNQD-EELDIIDIYEQYEAFNE 353
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ N L + ++ + +NP E++ V
Sbjct: 354 YLKRVPGDLDIVMIPGNHDAVRLAEPQPGFNEELRSIMSAHDP-QIVSNPSTVEIEGVSI 412
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + ++ + M + L+ RH+AP P ++D ++E
Sbjct: 413 LMYHGVSLDEVIAELPSEKASYDEPHKAMYQLLKKRHVAPQFGGHTRLAP-EEKDHLVME 471
Query: 379 SCPHVYFAGNQQKF 392
S P ++ G+ K
Sbjct: 472 SVPDIFHTGHVHKL 485
>gi|354609831|ref|ZP_09027787.1| DNA-directed DNA polymerase [Halobacterium sp. DL1]
gi|353194651|gb|EHB60153.1| DNA-directed DNA polymerase [Halobacterium sp. DL1]
Length = 552
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G + G L D + P+ P + LVS ++VGS Q
Sbjct: 260 VIAIEGTLSDDGGILFADDIFFPDIPRTHEPNTADRHVQAALVSDVHVGS--------QE 311
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D D A + ++++AG+ +E G+ Q+ D L+E +
Sbjct: 312 FADDEWSAFADWLHTPEADAVEYLLVAGDMVE-GVGVYPNQD-EELDIVDLYEQYETFAE 369
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + ++PG +D + PQ + L + ++ R NP ++ V
Sbjct: 370 RLKEVPGDTEIVMIPGNHDAVRLAEPQPAFDEELRSIMSAHDA-RFTGNPSTVTVEGVNI 428
Query: 324 LGTSGQTIDDLQKYSEANDQL-----EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G +ID++ + D ME LR RH+AP P + D +++
Sbjct: 429 LMYHGVSIDEIIAEHPSEDVSYDNPHRAMELLLRKRHVAPQFGGRTRLAP-EEEDYLVMD 487
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 488 EVPDVFHTGHVHKL 501
>gi|448664258|ref|ZP_21684061.1| DNA polymerase II small subunit [Haloarcula amylolytica JCM 13557]
gi|445774903|gb|EMA25917.1| DNA polymerase II small subunit [Haloarcula amylolytica JCM 13557]
Length = 522
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 103/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 230 VIAVEGTLADDAGILFVDSLYFPDVPRTHSPSTADRHVQAALISDVHVGS--------QE 281
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 282 FMEDAWHRFTDWLHTSEAENVEYLLIAGDMVE-GVGIYPEQD-EELDIIDIYDQYRAFSE 339
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L T + + +NP ++ V
Sbjct: 340 YLKEVPGDMEIRMIPGNHDAVRLAEPQPGFDEELR-DIMTAHDAQVHSNPSLVTVEGVTV 398
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + + M + L+ RH+AP P DRD ++E
Sbjct: 399 LMYHGVSLDEVIAELPDEEASYEEPHKAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 457
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 458 EVPDVFHTGHVHKL 471
>gi|432329588|ref|YP_007247731.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Methanoregula formicicum SMSP]
gi|432136297|gb|AGB01224.1| archaeal DNA polymerase II, small subunit/DNA polymerase delta,
subunit B [Methanoregula formicicum SMSP]
Length = 465
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 104/257 (40%), Gaps = 37/257 (14%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + GK ++ G + L P S + VL+S ++VGS T +
Sbjct: 179 VIGVKGKLSNDGRLFFAEFLYRPDIRIDNTPFKSDKPGKAVLISDVHVGSNTFLEEAWNR 238
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN--LASKDQSRLFEPIKEL 261
D L D Q +++IAG+ ++ G+ GQ+ L K+ ++E
Sbjct: 239 FADW----LSDSDYQ-------YLLIAGDLVD-GIGIYPGQDQELTIKN---IYEQYDAF 283
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT---NPHCFEL 318
+L+ + + + + I PG +D + PQ + P + T ++C NP L
Sbjct: 284 GAMLSDLPSRMKIIISPGNHDVVRGAEPQP-----VIPEAFTKKFPQNCMQVENPAVVNL 338
Query: 319 DNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAPT-APNTLGCYPFTD 371
VR + G++IDD+ Y + ME L RHLAP T TD
Sbjct: 339 QGVRVMMYHGRSIDDMIGLIPGASYEHSG---LMMEEMLIRRHLAPAYGRRTPIAAGRTD 395
Query: 372 RDPFLVESCPHVYFAGN 388
R +++ P + G+
Sbjct: 396 R--MIIDPIPEILHTGH 410
>gi|344210309|ref|YP_004794629.1| DNA polymerase II small subunit [Haloarcula hispanica ATCC 33960]
gi|343781664|gb|AEM55641.1| DNA polymerase II small subunit [Haloarcula hispanica ATCC 33960]
Length = 522
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 103/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 230 VIAVEGTLADDAGILFVDSLYFPDVPRTHSPSTADRHVQAALISDVHVGS--------QE 281
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 282 FMEDAWHRFTDWLHTSEAENVEYLLIAGDMVE-GVGIYPEQD-EELDIIDIYDQYRAFSE 339
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L T + + +NP ++ V
Sbjct: 340 YLKEVPGDMEIRMIPGNHDAVRLAEPQPGFDEELR-DIMTAHDAQVHSNPSLVTVEGVTV 398
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + + M + L+ RH+AP P DRD ++E
Sbjct: 399 LMYHGVSLDEVIAELPDEEASYEEPHKAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 457
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 458 EVPDVFHTGHVHKL 471
>gi|448560397|ref|ZP_21633845.1| DNA polymerase II small subunit [Haloferax prahovense DSM 18310]
gi|445722047|gb|ELZ73710.1| DNA polymerase II small subunit [Haloferax prahovense DSM 18310]
Length = 530
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 239 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 290
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D A I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 291 MAGAWNRFADWLHTEEAERIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYEAFSEH 348
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 349 LKSVPGDLDIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMITLEGVNVL 407
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 408 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 463
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 464 MEDVPDIFHTGHVHKL 479
>gi|260945677|ref|XP_002617136.1| hypothetical protein CLUG_02580 [Clavispora lusitaniae ATCC 42720]
gi|238848990|gb|EEQ38454.1| hypothetical protein CLUG_02580 [Clavispora lusitaniae ATCC 42720]
Length = 650
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 23/223 (10%)
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLD-----AGLAPQKELPLNS--G 178
R+ L + L ++ G +V L G+ + F+V +VL +P EL N+ G
Sbjct: 268 RIPLDISNLDEYSFFPGQIVGLKGRNPTGRTFVVHEVLSLPPLGQSASPLSELEENAKKG 327
Query: 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKE--QGIAAEIVHVVIAGNSIEI 236
E V + SG T N + + LVDHI ++ E G +I + + IE+
Sbjct: 328 EGFKVFIASGPFSNQHTLNYSKLESLVDHINDNIKPEVVILLGPFLDITNKSVESGDIEL 387
Query: 237 PRGLLNGQNLASKDQSRLFEPIKELDI--LLTQIAAGVPLDIMPGPNDPAN--FSLPQQP 292
P NL S Q + + + ++ + +L +I + + ++P D N S PQ
Sbjct: 388 P-------NLPSNQQPKNLDELFKMAVAPILKKIDTQIQVILIPSLKDSINTHASYPQAG 440
Query: 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQ 335
+R F+ NP F ++ F ++ DL+
Sbjct: 441 FDRKKL---GLPKNFKCFPNPSTFSVNEATFGVSNVDLFKDLK 480
>gi|448605282|ref|ZP_21657957.1| DNA polymerase II small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445742806|gb|ELZ94299.1| DNA polymerase II small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 532
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 241 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 292
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D A I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 293 MAGAWNRFADWLHTEEAERIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYEAFSEH 350
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 351 LKSVPGDLDIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMVTLEGVNVL 409
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 410 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 465
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 466 MEDVPDIFHTGHVHKL 481
>gi|397779388|ref|YP_006543861.1| DNA polymerase II small subunit [Methanoculleus bourgensis MS2]
gi|396937890|emb|CCJ35145.1| DNA polymerase II small subunit [Methanoculleus bourgensis MS2]
Length = 467
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 101/257 (39%), Gaps = 37/257 (14%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + GK ++ G L D L P P S VL+S ++VGS T
Sbjct: 181 VLGVKGKLSNDGGLLFADQLSRPDIPINHAPFRSDRPGKAVLISDVHVGSNT-------- 232
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKEL 261
++ D + AA +++IAG+ ++ G+ GQ L K+ ++ E
Sbjct: 233 FLEEAWNRFADWLQDSDAA---YLLIAGDLVD-GIGIYPGQENELTIKNIYEQYDVFAE- 287
Query: 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT---NPHCFEL 318
+L + + + + PG +D + PQ + P T +CT NP L
Sbjct: 288 --MLRDLPSRIRIVAAPGNHDVVRMAEPQPAI-----PPEFTEKFPENCTLVENPCLLNL 340
Query: 319 DNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLA-PTAPNTLGCYPFTD 371
VR L G++ DD+ Y E M+ L+ R LA P T TD
Sbjct: 341 QGVRVLMYHGRSFDDMIGLIPGASYERPG---EIMDEMLKRRLLASPYGMRTPIAAMKTD 397
Query: 372 RDPFLVESCPHVYFAGN 388
R +++ P + G+
Sbjct: 398 R--LVIDPLPEILLTGH 412
>gi|169236956|ref|YP_001690156.1| DNA polymerase II small subunit [Halobacterium salinarum R1]
gi|13431475|sp|Q9HMR7.2|DP2S_HALSA RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|229487490|sp|B0R7U1.1|DP2S_HALS3 RecName: Full=DNA polymerase II small subunit; Short=Pol II
gi|167728022|emb|CAP14810.1| DNA-directed DNA polymerase D exonuclease subunit DP1
[Halobacterium salinarum R1]
Length = 508
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L D + P+ P + L+S ++VGS ++
Sbjct: 216 VIAVSGTLADDGTILFADDIYFPEVPRTYSPSTADRSVQAALISDVHVGSQEFAADAWRS 275
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + A + +++IAG+ +E G+ GQ+ D +++ +
Sbjct: 276 FADWL--------HTPAAESVEYLLIAGDMVE-GVGVYPGQD-EELDIVDIYDQYETFAE 325
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L + + + ++PG +D + PQ + L ++ R +NP +D V
Sbjct: 326 HLKDVPGDMEIVMIPGNHDAVRLAEPQPAFDEELRSIMRAHDA-RITSNPSTVTIDGVSV 384
Query: 324 LGTSGQTIDDLQKYSEANDQL-----EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++D ME L+ RH+AP P + D ++
Sbjct: 385 LLYHGVSLDEVIAEHPSDDVTYDDPQNAMELLLKKRHVAPPFGGRTRLAPEAE-DHLAID 443
Query: 379 SCPHVYFAGNQQKF 392
+ P V+ G+ K
Sbjct: 444 TVPDVFHTGHVHKL 457
>gi|448622220|ref|ZP_21668914.1| DNA polymerase II small subunit [Haloferax denitrificans ATCC
35960]
gi|445754302|gb|EMA05707.1| DNA polymerase II small subunit [Haloferax denitrificans ATCC
35960]
Length = 533
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 23/256 (8%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D + P+ P + D L+S ++VGS Q
Sbjct: 242 IAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGS--------QEF 293
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
+ D A I +++IAG+ +E G+ Q+ D ++E +
Sbjct: 294 MAGAWNRFADWLHTEEAERIEYLLIAGDMVE-GVGVYPNQD-EELDVIDIYEQYEAFSEH 351
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L + + + ++PG +D + PQ + L + ++ R +NP L+ V L
Sbjct: 352 LKSVPGDLDIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDA-RITSNPSMVTLEGVNVL 410
Query: 325 GTSGQTID--------DLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFL 376
G ++D D Y E + + M + L+ RH+AP P + D +
Sbjct: 411 MYHGVSLDEVIAELPADKASYDEPH---KAMYQLLKKRHVAPQFGGHTRLAP-EELDYLV 466
Query: 377 VESCPHVYFAGNQQKF 392
+E P ++ G+ K
Sbjct: 467 MEDVPDIFHTGHVHKL 482
>gi|50304257|ref|XP_452078.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641210|emb|CAH02471.1| KLLA0B12309p [Kluyveromyces lactis]
Length = 649
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 107/261 (40%), Gaps = 40/261 (15%)
Query: 126 RVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVL----------DAGLAPQKELPL 175
R++L ++ + G +VAL GK + F+V D+L D+ + ++ L
Sbjct: 289 RIRLNFEKIQNLSVFPGQIVALKGKNANGEYFVVEDILKIPYLNSPVSDSEMLQDSQITL 348
Query: 176 NSGEDKYVVLVSGLNVGSGT-SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI 234
N+ K VV GS T +N L F L H D I I +++ G +
Sbjct: 349 NNQPMKVVV-----TAGSYTPANNLDFSNL-----EHFVDRINTSIKPHI--LIMFGPFL 396
Query: 235 EIPRGLLNGQNLAS----KDQSRLFEP--IKELDILLTQIAAGVPLDIMPGPND--PANF 286
+I L++ N+ K Q + + IK + +L +I + + ++P + +
Sbjct: 397 DITHQLISSGNIPDFPNLKQQPKTLDEVFIKVIAPILKRINPKIQVILIPSTKEVTSKHA 456
Query: 287 SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLE- 345
+ PQ L+R + F+ TNP F+L+ + F ++ DL++ ++ + +
Sbjct: 457 AYPQDSLDRKYL---SLPKNFKCFTNPSTFQLNEIFFGCSNNDIYKDLKEVTKGGNVFQR 513
Query: 346 -----FMERTLRWRHLAPTAP 361
E L R P P
Sbjct: 514 NRFDRVSEHILEQRRYYPVFP 534
>gi|448628472|ref|ZP_21672241.1| DNA polymerase II small subunit [Haloarcula vallismortis ATCC
29715]
gi|445758003|gb|EMA09328.1| DNA polymerase II small subunit [Haloarcula vallismortis ATCC
29715]
Length = 522
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G L +D L P+ P + L+S ++VGS Q
Sbjct: 230 VIAVEGTLADDAGILFVDSLYFPDVPRTHSPSTADRHVQAALISDVHVGS--------QE 281
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
++ D A + +++IAG+ +E G+ Q+ D +++ +
Sbjct: 282 FMEDAWHRFTDWLHTPEAETVEYLLIAGDMVE-GVGIYPEQD-EELDIIDIYDQYRAFSE 339
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L ++ + + ++PG +D + PQ + L + ++ + +NP ++ V
Sbjct: 340 YLKEVPGDMEIRMIPGNHDAVRLAEPQPGFDEELRDIMSAHDA-QVHSNPSLVTVEGVTV 398
Query: 324 LGTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ + + + + M + L+ RH+AP P DRD ++E
Sbjct: 399 LMYHGVSLDEVIAELPDEEASYEEPHKAMYQLLKKRHVAPQYGGHTRLAP-EDRDYLVME 457
Query: 379 SCPHVYFAGNQQKF 392
P V+ G+ K
Sbjct: 458 EVPDVFHTGHVHKL 471
>gi|322371408|ref|ZP_08045957.1| DNA-directed DNA polymerase [Haladaptatus paucihalophilus DX253]
gi|320548940|gb|EFW90605.1| DNA-directed DNA polymerase [Haladaptatus paucihalophilus DX253]
Length = 407
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 105/253 (41%), Gaps = 17/253 (6%)
Query: 145 VALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLL 204
+A+ G + L +D L P+ P + L+S ++VGS +F
Sbjct: 116 IAVEGTLSDDAGILFVDSLHFPDVPRTYRPSTADRHVQAALISDVHVGSQ-----EFMAD 170
Query: 205 VDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264
H + +E A + +++I G+ +E G+ Q+ D +FE +E
Sbjct: 171 AWHRFANWLHTEE---AEHVEYLLICGDMVE-GVGIYPNQD-EELDIIDIFEQYEEFSEY 225
Query: 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFL 324
L ++ + + ++PG +D + PQ + L ++ + +NP ++ V L
Sbjct: 226 LKEVPGDLEIVMIPGNHDAVRLAEPQPGFDDELRSIMDVHDA-KITSNPSTVTIEGVSVL 284
Query: 325 GTSGQTIDDL-----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVES 379
G ++D++ + + + + M + L+ RH+AP P ++D +++
Sbjct: 285 MYHGVSLDEVIAELPAEKASYEEPHKAMYQLLKKRHVAPQYGGHTRVAP-EEKDYLVIDE 343
Query: 380 CPHVYFAGNQQKF 392
P ++ G+ K
Sbjct: 344 VPDIFHTGHVHKL 356
>gi|154149584|ref|YP_001403202.1| DNA polymerase II small subunit [Methanoregula boonei 6A8]
gi|153998136|gb|ABS54559.1| DNA-directed DNA polymerase [Methanoregula boonei 6A8]
Length = 465
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 38/229 (16%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+ + GK ++ G + + P S + V +S ++VGS T +
Sbjct: 179 VIGVKGKLSTDGRLFFAEQMFRPDIRIDNKPYLSDKPGKAVFISDVHVGSNTFLEDSWLR 238
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
VD I E G + +++IAG+ ++ G+ GQ DQ + I E
Sbjct: 239 FVDWI-------GESGAS----YLLIAGDLVD-GIGVFPGQ-----DQELTIKNIYEQYD 281
Query: 264 LLTQIAAGVP----LDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCT---NPHCF 316
++ +G+P + + PG +D + PQ + P T +C NP
Sbjct: 282 AFGEMISGIPHRIKIIVAPGNHDVVRGAEPQP-----VIPEQFTRKFPENCMLVENPALV 336
Query: 317 ELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAPT 359
L VR L G++IDD+ Y ++ + ME L+ RHLAP
Sbjct: 337 NLQGVRVLMYHGRSIDDMIGLIPGASYEQSG---KMMEEMLQRRHLAPA 382
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,251,227,926
Number of Sequences: 23463169
Number of extensions: 324444221
Number of successful extensions: 642358
Number of sequences better than 100.0: 592
Number of HSP's better than 100.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 639866
Number of HSP's gapped (non-prelim): 695
length of query: 439
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 293
effective length of database: 8,933,572,693
effective search space: 2617536799049
effective search space used: 2617536799049
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)