BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013632
(439 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48520|DPOD2_ARATH DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2
PE=2 SV=2
Length = 440
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/439 (77%), Positives = 389/439 (88%), Gaps = 1/439 (0%)
Query: 1 MEIDGEEARLQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKP 60
MEID E+ +RKQ+ Y LDE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK
Sbjct: 1 MEIDSEKIH-ERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKS 59
Query: 61 HLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVL 120
HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+L
Sbjct: 60 HLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLIL 119
Query: 121 EDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED 180
EDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++ ED
Sbjct: 120 EDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQED 179
Query: 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL 240
KYVVL+SGL +GS ++NPLQFQLLVDHITGHLGDE+EQG+AA+IVHVVIAGNS E PR L
Sbjct: 180 KYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKL 239
Query: 241 LNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
+NGQNLASKDQS L+EPIKELDI+L+QIAAGV +DIMPG NDPANF+LPQQPLNRCLFPG
Sbjct: 240 INGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPG 299
Query: 301 SATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTA 360
S+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA +L+F+ERTLRWRHLAPTA
Sbjct: 300 SSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTA 359
Query: 361 PNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420
PNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+AV
Sbjct: 360 PNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAV 419
Query: 421 VVNLKNLECHTLSFGTQFS 439
VNL+NLECHTLSF TQ +
Sbjct: 420 AVNLRNLECHTLSFSTQIN 438
>sp|Q9LRE5|DPOD2_ORYSJ DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica
GN=POLD2 PE=2 SV=1
Length = 429
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/429 (72%), Positives = 369/429 (86%), Gaps = 2/429 (0%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKPHLP+ TVL
Sbjct: 1 MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG 60
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
LEEG++C+I+GTLYKHMKLKPSILDEYSKERS PLVKPHNFMHPDDHL+LEDESGRV L
Sbjct: 61 LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL 120
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGL 189
GA + P+AYVTG+V+ALHGKETSAG FLV D+L+AG+ PQ LP + EDKYVV VSGL
Sbjct: 121 AGA-IPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLP-SINEDKYVVFVSGL 178
Query: 190 NVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASK 249
++GS NPLQFQLL+DHITGHLGDE EQ IA+ IV VV+AGNS+ I NGQ +ASK
Sbjct: 179 SIGSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASK 238
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
DQSR+ EPIKELDI+LTQ+ A +P+D+MPG NDPANFSLPQQPL+RCLF G+ATYNTF S
Sbjct: 239 DQSRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSS 298
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
C+NPH FELD+VRF+GTSGQ IDDL KYS+A D+LEF+ERTLRWRHLAPTAPN+LGCYP+
Sbjct: 299 CSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPY 358
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
TD+DPFLVESCPHVYF GNQ K+ET+LL+G ++Q VRL+CIP+F ++GVAV++NL+NLEC
Sbjct: 359 TDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLEC 418
Query: 430 HTLSFGTQF 438
TLSF T F
Sbjct: 419 STLSFSTSF 427
>sp|O35654|DPOD2_MOUSE DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=2
Length = 469
Score = 337 bits (863), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 185/426 (43%), Positives = 259/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G F V D A LAPQK +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFA 453
>sp|Q6AXY4|DPOD2_RAT DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1
SV=1
Length = 469
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 256/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G
Sbjct: 30 ATYTNSSQPFRLGERSF-NRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPG 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+F V D A LAPQ +P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL+ L C
Sbjct: 388 YKTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFA 453
>sp|P49005|DPOD2_HUMAN DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1
Length = 469
Score = 332 bits (850), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 257/426 (60%), Gaps = 7/426 (1%)
Query: 15 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEG 73
ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+
Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPE 88
Query: 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133
+C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G
Sbjct: 89 EKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT- 147
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ S VTG V+A+ G G+FLV D A LAPQK P + +++ G
Sbjct: 148 IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGG 207
Query: 194 GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLASK 249
G + L QLLVD +TG LGDE EQ AA + V++AGN S + + + L K
Sbjct: 208 GGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKK 267
Query: 250 DQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRS 309
Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 268 TQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQL 327
Query: 310 CTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPF 369
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF
Sbjct: 328 VTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPF 387
Query: 370 TDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLEC 429
DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C
Sbjct: 388 YKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLAC 447
Query: 430 HTLSFG 435
+SF
Sbjct: 448 QPISFS 453
>sp|P49004|DPOD2_BOVIN DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2
Length = 469
Score = 330 bits (846), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 267/426 (62%), Gaps = 11/426 (2%)
Query: 16 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGR 74
TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G
Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGE 89
Query: 75 ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL 134
+C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G +
Sbjct: 90 KCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-I 148
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYVVLVSGLNVGS 193
S VTG V+A+ G G+FLV D AGLAPQK PL++ D++V+LVSGL +G
Sbjct: 149 DVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGG 206
Query: 194 GTSNPLQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE---IPRGLLN-GQNLAS 248
G L QLLVD +TG LGDE EQ AA + V++AGN + R +N + L
Sbjct: 207 GGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTK 266
Query: 249 KDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFR 308
K Q+ E +K LD +L Q++A VP+D+MPG DP N++LPQQPL+ C+FP + Y+T +
Sbjct: 267 KTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQ 326
Query: 309 SCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYP 368
TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYP
Sbjct: 327 LVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYP 386
Query: 369 FTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLE 428
F DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L
Sbjct: 387 FYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLA 446
Query: 429 CHTLSF 434
C +SF
Sbjct: 447 CQPISF 452
>sp|O93610|DPOD2_XENLA DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1
Length = 463
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 183/417 (43%), Positives = 259/417 (62%), Gaps = 9/417 (2%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRALLY-SLVPNWKPHLPICTVLELEEGRECVIIGTL 82
F + + T+ +QY+ IY RL MR LL S W + + + EL+ G +C +IGTL
Sbjct: 39 FRLGERTFT-RQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKLCELQGGEKCCVIGTL 97
Query: 83 YKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTG 142
+K M+L+PSIL E S+E + P ++ D L+LEDE R+KL GA + VTG
Sbjct: 98 FKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQRIKLEGATDV-QQLVTG 156
Query: 143 IVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202
V+A+ G E AG+F+V D L Q LP S ED++V+L SGL +G G+ + L
Sbjct: 157 AVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLS-EDRFVLLTSGLGLGGGSGDSLMGL 215
Query: 203 LLVDH-ITGHLGDEKEQGIAAEIVHVVIAGNSI-EIPRG---LLNGQNLASKDQSRLFEP 257
L+ +TG G E++QG AA I V++AGN + E +G L + L+ K Q+ E
Sbjct: 216 QLLLDLVTGQAGAEEDQGCAARISRVILAGNLLSENTQGKDSLNKAKYLSKKTQAASVEA 275
Query: 258 IKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE 317
+K LD +L Q++ V +D+MPG DP N+ LPQQPL+RC+FP SA Y+T + TNP+ E
Sbjct: 276 VKMLDEILLQMSGSVSVDVMPGAFDPTNYILPQQPLHRCMFPQSALYSTLQLVTNPYEAE 335
Query: 318 LDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLV 377
+D VRFLGTSGQ I D+ KYS D L+ +E TL+ HL PTAP+TLGCYPF DPF++
Sbjct: 336 IDGVRFLGTSGQNIGDIYKYSSMQDYLDILEWTLQVGHLCPTAPDTLGCYPFYKSDPFIL 395
Query: 378 ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
++CPHVYF G+ KF + + G++ Q V L+ +P+F T A +VNL+ L+C +SF
Sbjct: 396 QNCPHVYFCGSAPKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTLQCQPISF 452
>sp|Q9W088|DPOD2_DROME DNA polymerase delta small subunit OS=Drosophila melanogaster
GN=CG12018 PE=2 SV=1
Length = 431
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 236/434 (54%), Gaps = 20/434 (4%)
Query: 12 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLV-PNWKPHLPICTVLEL 70
R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL
Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCEL 62
Query: 71 --EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVK 128
E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+
Sbjct: 63 RGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVR 122
Query: 129 LGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKEL-PLNSGEDKYVVLVS 187
L G +L TG+V A G S G F V D+L PQK L P+ + +VL S
Sbjct: 123 LQG-KLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIK--RSRLLVLAS 179
Query: 188 GLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIE------IPRGLL 241
GL+ L + G LG+ KE G +V +++AGNS+ +P +
Sbjct: 180 GLDQLQAHKFVEALNLFQYWLAGSLGNNKEAG---SMVRLIVAGNSVRASAMAHVPTLQV 236
Query: 242 NGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS 301
+ D + + +LD A +P+DIMPGP DPANF LPQQP ++C+FP +
Sbjct: 237 ARTQANANDT---VQAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQA 293
Query: 302 ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAP 361
A TF++ TNP+ LD +GTSGQ + DL + + + LE + TL W H+APTAP
Sbjct: 294 AQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAP 353
Query: 362 NTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVV 421
+TL CYP+ + DPF++ CPHVY+AGN + F T L +GS+ + RLVC+P FS+T V
Sbjct: 354 DTLACYPYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAV 413
Query: 422 VNLKNLECHTLSFG 435
V+L L+C ++F
Sbjct: 414 VDLDTLDCRMVNFS 427
>sp|P87324|DPOD2_SCHPO DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cdc1 PE=1 SV=1
Length = 462
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 223/436 (51%), Gaps = 29/436 (6%)
Query: 24 FEIQKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPICTVLELEEGRECVIIGTL 82
+ ++TY QQY+ IYFARL +R + + W + VL+++ +C ++ T
Sbjct: 18 LSLSQQTY-SQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSDEDCWVVATA 76
Query: 83 YKHMKLKPSILDEYSKERST------TPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLP 136
Y LKP+++++ ++ + +P V P + D LED+ GR+ G+ L
Sbjct: 77 YMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYD 136
Query: 137 SAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK----YVVLVSGLNVG 192
+ VTG+V+A+ G E G F+V+DV G+ +P+ + E + Y+ VSGL +
Sbjct: 137 AGVVTGVVLAVLGHEDEQGRFVVVDVCFPGIF-SHSIPMTTDESQAQPEYIAAVSGLGLS 195
Query: 193 SGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN----SIEIPRGLLNGQNLAS 248
+ +Q LVD + G L + I ++I GN SIEI +
Sbjct: 196 NDGIEGIQVHQLVDFLRGTLPHVSSFS-PSSIKRLIILGNCLAPSIEIADSASASVPIGK 254
Query: 249 KDQSRLF--------EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPG 300
K R P +LD L Q+ + + + +MPGP D ++ LPQQPL+ L
Sbjct: 255 KKVKRYGYDTSAYNPNPTFQLDNFLDQVCSSIDVTLMPGPYDYSSTILPQQPLHPALLTK 314
Query: 301 SATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAP 358
S + ++ ++ TNP L N L TSGQ I+DL+KY L+ ME TL W H+ P
Sbjct: 315 SKVWLGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHITP 374
Query: 359 TAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGV 418
T+P+TL CYPFTD+D F++E P +Y GNQ KF + + + ++LV +P+F +TGV
Sbjct: 375 TSPDTLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGCKTVINEGNR-IQLVSVPEFRKTGV 433
Query: 419 AVVVNLKNLECHTLSF 434
V++N+ L + F
Sbjct: 434 LVLINMHTLNVEIIQF 449
>sp|P46957|DPOD2_YEAST DNA polymerase delta small subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL31 PE=1 SV=1
Length = 487
Score = 219 bits (558), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 236/459 (51%), Gaps = 59/459 (12%)
Query: 23 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELE 71
PF++ +K Y G QY IY RL R +L W + VL+++
Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQ 97
Query: 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKL 129
+ C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L
Sbjct: 98 GNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLL 157
Query: 130 GGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPL---NSGEDKYVVLV 186
G + + ++TG+VV + G E AG F VLD+ PQ P + LV
Sbjct: 158 VGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALV 217
Query: 187 SGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN 245
SGLN+ + + + L + ++L + + G + ++ + + I ++I GNS++ +
Sbjct: 218 SGLNLNNTSPDRLLRLEILREFLMGRINNKIDD--ISLIGRLLICGNSVDF--------D 267
Query: 246 LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS---- 301
+ S ++ L + E L I + +DIMPG NDP++ SLPQQP ++ LF S
Sbjct: 268 IKSVNKDELMISLTEFSKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESY 327
Query: 302 ---ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND 342
+ TNP+ F + V L SG+ I+D+ KY E+ND
Sbjct: 328 FNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESND 387
Query: 343 -------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETR 395
+L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR
Sbjct: 388 FKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTR 447
Query: 396 LLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434
+++ + ++++ +P+FS TG+ ++++L+ LE T+
Sbjct: 448 VVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETVKI 485
>sp|Q19366|DPOD2_CAEEL Probable DNA polymerase delta small subunit OS=Caenorhabditis
elegans GN=F12F6.7 PE=3 SV=1
Length = 451
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/442 (25%), Positives = 193/442 (43%), Gaps = 40/442 (9%)
Query: 25 EIQKETYRGQQYSQIYFARLHLM--RALLYSLVPNWKPHLPICTVLELEEGRECVIIGTL 82
E K+ +QY ++Y ARL + R L + K + + ++ E ++G +
Sbjct: 22 EKDKKGAFTRQYFEVYEARLKELKPRILENAEREIGKGKFTHSQLSDAKQDEEIFVVGVI 81
Query: 83 YKHMKLKPSILDEYSKERSTTPLVKPHNFMHP---------DDHLVLEDESGRVKLGGAE 133
K + +PSIL E + +D + LE + V+L G
Sbjct: 82 VKRIAARPSILKSLLNEDKVAYDDYEEDAEEDEVKRYAGSIEDRIELESDKQTVRLEG-N 140
Query: 134 LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGS 193
+ TG V + GK G F V + + P ++P D + VSGL++
Sbjct: 141 ISMDECATGCCVGVLGKLGKEGVFHV----NRLVWPSVKVPKKVAVDGTIAFVSGLDLTG 196
Query: 194 G------TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQN-- 245
T + L+F + D + +G+E + I +V+ G +E + Q+
Sbjct: 197 DLEDDRLTISGLEF--MADWMNVQVGNENQ---CPPIDRLVVIGPLVETKSNGCDVQSVV 251
Query: 246 ----LASKDQSRLFEPIKELDILLTQIAAGVPL----DIMPGPNDPANFSLPQQPLNRCL 297
L+ ++ + +D ++ IA PL D+ PG DP + P P++R
Sbjct: 252 RTLTLSRAEKHSSTASLITVDKIINSIAEK-PLVNTVDVTPGVGDPCSSMWPLPPIHRVC 310
Query: 298 FPGSATYNT-FRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHL 356
P + TNP+ FE++ +R + SG+ + +L + S + +E ++W+H+
Sbjct: 311 LPRCGMSDKKVNLVTNPYEFEVNGLRVMTMSGENVSELLRTSLKWTGADAIENIIKWQHV 370
Query: 357 APTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416
AP P+TL +P +RDP +++ PHV GNQ E R + D +VC+PKFS+T
Sbjct: 371 APNCPDTLDAFPVAERDPLIMDITPHVIICGNQPHAEFRHIP-IDGSNCLVVCLPKFSKT 429
Query: 417 GVAVVVNLKNLECHTLSFGTQF 438
VA +NL +L +F QF
Sbjct: 430 RVACFLNLSDLSLKWQNFDHQF 451
>sp|O27456|DP2S_METTH DNA polymerase II small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=polB PE=3 SV=1
Length = 482
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 46/360 (12%)
Query: 40 YF-ARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECV-IIGTL--YKHMKLKPSILDE 95
YF +R ++ LL S P K H+PI +L G + V IIG + ++ K I+ E
Sbjct: 105 YFNSRYSSLKNLL-SKRPELKGHIPIA---DLRGGEDVVSIIGMVNDVRNTKNNHRII-E 159
Query: 96 YSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAG 155
+ +V +H ++H + E V+ VV +HG T G
Sbjct: 160 LEDDTGEISVV-----VHNENHKLFEKSEKIVR-------------DEVVGVHG--TKKG 199
Query: 156 EFLVL-DVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGD 214
F+V ++ G+ +E + D V +S +++GS T F V I G G
Sbjct: 200 RFVVASEIFHPGVPRIQEKEM----DFSVAFISDVHIGSQTFLEDAFMKFVKWINGDFGS 255
Query: 215 EKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGV 272
E+++ +AA++ ++V+AG+ ++ G+ GQ L +D + E +E L I + +
Sbjct: 256 EEQRSLAADVKYLVVAGDIVD-GIGIYPGQEKELLIRD---IHEQYEEAARLFGDIRSDI 311
Query: 273 PLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTID 332
+ ++PG +D + + PQ + + +NP LD VR L G++ D
Sbjct: 312 KIVMIPGNHDSSRIAEPQPAIPEEYAKSLYSIRNIEFLSNPSLVSLDGVRTLIYHGRSFD 371
Query: 333 DL----QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
D+ S L ME L RHLAP + D +++ PHV G+
Sbjct: 372 DMAMSVNGLSHERSDL-IMEELLEKRHLAPIYGERTPLASEIE-DHLVIDEVPHVLHTGH 429
>sp|O28484|DP2S_ARCFU DNA polymerase II small subunit OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=polB PE=3 SV=1
Length = 488
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 35/273 (12%)
Query: 140 VTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPL 199
V G+ L G A + DV G +K D Y+V +S + GS
Sbjct: 193 VIGVTGLLKGSSLYANRIVFPDVPINGNGEKKR-------DFYIVFLSDTHFGSKEFLEK 245
Query: 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQSRLFE- 256
++++ V + G +G +K Q +A ++ ++VIAG+ ++ G+ GQ +LA D +E
Sbjct: 246 EWEMFVRWLKGEVGGKKSQNLAEKVKYIVIAGDIVD-GIGVYPGQEDDLAISDIYGQYEF 304
Query: 257 PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLN---RCLFPGSATYNTFRSCTNP 313
LD +I + + + PG +D + PQ R LFP + + NP
Sbjct: 305 AASHLD----EIPKEIKIIVSPGNHDAVRQAEPQPAFEGEIRSLFPKNVEH-----VGNP 355
Query: 314 HCFELDNVRFLGTSGQTIDDL------QKYSEANDQLEFMERTLRWRHLAPTAPNTLGCY 367
+++ V+ L G++IDD+ Y E + ME L+ RHL+P
Sbjct: 356 AYVDIEGVKVLIYHGRSIDDIISKIPRLSYDEPQ---KVMEELLKRRHLSPIYGGRTPLA 412
Query: 368 PFTDRDPFLV-ESCPHVYFAGNQQKFETRLLKG 399
P +R+ +LV E P + G+ + T +G
Sbjct: 413 P--EREDYLVIEDVPDILHCGHIHTYGTGFYRG 443
>sp|O57863|DP2S_PYRHO DNA polymerase II small subunit OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=polB PE=1 SV=1
Length = 622
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 134/299 (44%), Gaps = 33/299 (11%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAGEFLV--LDVLDAGL 167
+ED++ RVK+ ++LP A VVA G + G F + D L
Sbjct: 290 VEDQTDRVKVFLPKDSEDYREALKVLPDA-----VVAFKGVYSKRGIFFANRFYLPDVPL 344
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+++ PL E Y VL S ++VGS F ++ + G++ ++E+ I + I ++
Sbjct: 345 YRKQKPPLE--EKVYAVLTSDIHVGSKEFCEKAFIKFLEWLNGYVESKEEEEIVSRIRYL 402
Query: 228 VIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
+IAG+ ++ G+ GQ +L D +F+ + L LL+ + + + I PG +D A
Sbjct: 403 IIAGDVVD-GIGIYPGQYSDLIIPD---IFDQYEALANLLSNVPKHITIFIGPGNHDAAR 458
Query: 286 FSLPQQPL-NRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----SEA 340
++PQ P NT +NP L FL G+ I+D+ + +
Sbjct: 459 PAIPQPEFYEEYAKPLYKLKNTV-IISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHH 517
Query: 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L +E L+ RHLAPT + P D ++E P + G+ ++T + +G
Sbjct: 518 KPGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLVIEEVPDLVQMGHVHVYDTAVYRG 574
>sp|Q9V2F3|DP2S_PYRAB DNA polymerase II small subunit OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=polB PE=3 SV=1
Length = 619
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 131/298 (43%), Gaps = 31/298 (10%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAGEFLV--LDVLDAGL 167
+ED++G VK+ ++LP A VVA G + G F + D L
Sbjct: 287 VEDKTGIVKVFLPKDSEDYREAFKVLPDA-----VVAFKGFYSKKGIFFANKFYLPDVPL 341
Query: 168 APQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227
+++ PL E Y +L+S ++VGS F ++ + GH+ ++E+ I + + ++
Sbjct: 342 YRKQKPPLE--EKVYAILISDIHVGSREFCEKAFLKFLEWLNGHVESKEEEEIVSRVKYL 399
Query: 228 VIAGNSIEIPRGLLNGQ--NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285
+IAG+ ++ G+ GQ +L D +F+ + L LL + + + I PG +D A
Sbjct: 400 IIAGDVVD-GIGIYPGQYSDLVIPD---IFDQYEALANLLANVPEHITMFIGPGNHDAAR 455
Query: 286 FSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----SEAN 341
++PQ + +NP L FL G+ I+D+ + +
Sbjct: 456 PAIPQPEFYKEYAKPIYKLKNAIIISNPAVIRLHGRDFLIAHGRGIEDVVSFVPGLTHHK 515
Query: 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L +E L+ RHLAPT + P D ++E P + G+ ++ + +G
Sbjct: 516 PGLPMVE-LLKMRHLAPTFGGKVPIAP-DPEDLLVIEEVPDLVQMGHVHVYDAVVYRG 571
>sp|P81412|DP2S_PYRFU DNA polymerase II small subunit OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=polB PE=3 SV=1
Length = 613
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 33/299 (11%)
Query: 120 LEDESGRVKL----------GGAELLPSAYVTGIVVALHGKETSAG-----EFLVLDVLD 164
+ED +G+VK+ ++LP A VVA G + G +F + DV
Sbjct: 281 IEDLTGKVKVFLPKDSEDYREAFKVLPDA-----VVAFKGVYSKRGILYANKFYLPDV-- 333
Query: 165 AGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEI 224
L +++ PL E Y +L+S ++VGS F ++ + G++ ++E+ I + +
Sbjct: 334 -PLYRRQKPPLE--EKVYAILISDIHVGSKEFCENAFIKFLEWLNGNVETKEEEEIVSRV 390
Query: 225 VHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284
+++IAG+ ++ G+ GQ A +F+ + L LL+ + + + I PG +D A
Sbjct: 391 KYLIIAGDVVD-GVGVYPGQ-YADLTIPDIFDQYEALANLLSHVPKHITMFIAPGNHDAA 448
Query: 285 NFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDD----LQKYSEA 340
++PQ + +NP L FL G+ I+D + +
Sbjct: 449 RQAIPQPEFYKEYAKPIYKLKNAVIISNPAVIRLHGRDFLIAHGRGIEDVVGSVPGLTHH 508
Query: 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399
L +E L+ RH+AP + P D ++E P V G+ ++ + +G
Sbjct: 509 KPGLPMVE-LLKMRHVAPMFGGKVPIAP-DPEDLLVIEEVPDVVHMGHVHVYDAVVYRG 565
>sp|Q58113|DP2S_METJA DNA polymerase II small subunit OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=polB PE=3 SV=1
Length = 594
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 19/234 (8%)
Query: 135 LPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSG 194
+P + V+ G + +G + +D + P KE P E+ Y+ +S ++VGS
Sbjct: 278 IPDDILLDEVIGAIGTVSKSGSSIYVDEIIRPALPPKE-PKRIDEEIYMAFLSDIHVGSK 336
Query: 195 TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ--NLASKDQS 252
+F+ + + G + +E E+ + + + ++ IAG+ ++ G+ GQ +L D
Sbjct: 337 EFLHKEFEKFIRFLNGDVDNELEEKVVSRLKYICIAGDLVD-GVGVYPGQEEDLYEVD-- 393
Query: 253 RLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR---CLFPGSATYNTFRS 309
+ E +E+ + L QI + + I PG +D + PQ L LF Y
Sbjct: 394 -IIEQYREIAMYLDQIPEHISIIISPGNHDAVRPAEPQPKLPEKITKLFNRDNIYFVGNP 452
Query: 310 CT-NPHCFELDNVRFLGTSGQTIDDLQ---KYSEANDQLEFMERTLRWRHLAPT 359
CT N H F+ L G++ DDL + + + + M+ ++ R L PT
Sbjct: 453 CTLNIHGFDT-----LLYHGRSFDDLVGQIRAASYENPVTIMKELIKRRLLCPT 501
>sp|Q9HLK5|DP2S_THEAC DNA polymerase II small subunit OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=polB PE=3 SV=1
Length = 488
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 28/217 (12%)
Query: 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLL 241
YV +S ++VGS T +F+ +V I+G D A+ + +++++G+ ++ G+
Sbjct: 232 YVASISDIHVGSKTFRKNEFEAMVRWISGSDPD------ASRVKYLILSGDVVD---GI- 281
Query: 242 NGQNLASKDQSRLFEPIKELDIL---LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF 298
G ++ + P+++ L L + V + +MPG +D S PQ +F
Sbjct: 282 -GVYPDQENDLEILNPLEQYANLAEYLVDVPEDVKVFVMPGNHDTVRLSEPQP-----VF 335
Query: 299 PGSATYNTFRSCT----NPHCFELDNVRFLGTSGQTIDDLQKY---SEANDQLEFMERTL 351
PG + F NP+ +L+ L G +++D+ + + + + +E L
Sbjct: 336 PGKIR-DLFEPNVAFLPNPYNLKLEGKNVLVYHGMSLNDMIELIPGANYDSIGKAIEAIL 394
Query: 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN 388
RHL+P P + D ++E P ++ G+
Sbjct: 395 VRRHLSPKYGGNTPMIP-SAVDYHVIEEVPDIFITGH 430
>sp|Q9HMR7|DP2S_HALSA DNA polymerase II small subunit OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=polB PE=3 SV=2
Length = 508
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L D + P+ P + L+S ++VGS ++
Sbjct: 216 VIAVSGTLADDGTILFADDIYFPEVPRTYSPSTADRSVQAALISDVHVGSQEFAADAWRS 275
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + A + +++IAG+ +E G+ GQ+ D +++ +
Sbjct: 276 FADWL--------HTPAAESVEYLLIAGDMVE-GVGVYPGQD-EELDIVDIYDQYETFAE 325
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L + + + ++PG +D + PQ + L ++ R +NP +D V
Sbjct: 326 HLKDVPGDMEIVMIPGNHDAVRLAEPQPAFDEELRSIMRAHDA-RITSNPSTVTIDGVSV 384
Query: 324 LGTSGQTIDDLQKYSEANDQL-----EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++D ME L+ RH+AP P + D ++
Sbjct: 385 LLYHGVSLDEVIAEHPSDDVTYDDPQNAMELLLKKRHVAPPFGGRTRLAPEAE-DHLAID 443
Query: 379 SCPHVYFAGNQQKF 392
+ P V+ G+ K
Sbjct: 444 TVPDVFHTGHVHKL 457
>sp|B0R7U1|DP2S_HALS3 DNA polymerase II small subunit OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=polB PE=3 SV=1
Length = 508
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 101/254 (39%), Gaps = 17/254 (6%)
Query: 144 VVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQL 203
V+A+ G G L D + P+ P + L+S ++VGS ++
Sbjct: 216 VIAVSGTLADDGTILFADDIYFPEVPRTYSPSTADRSVQAALISDVHVGSQEFAADAWRS 275
Query: 204 LVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263
D + A + +++IAG+ +E G+ GQ+ D +++ +
Sbjct: 276 FADWL--------HTPAAESVEYLLIAGDMVE-GVGVYPGQD-EELDIVDIYDQYETFAE 325
Query: 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRF 323
L + + + ++PG +D + PQ + L ++ R +NP +D V
Sbjct: 326 HLKDVPGDMEIVMIPGNHDAVRLAEPQPAFDEELRSIMRAHDA-RITSNPSTVTIDGVSV 384
Query: 324 LGTSGQTIDDLQKYSEANDQL-----EFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVE 378
L G ++D++ ++D ME L+ RH+AP P + D ++
Sbjct: 385 LLYHGVSLDEVIAEHPSDDVTYDDPQNAMELLLKKRHVAPPFGGRTRLAPEAE-DHLAID 443
Query: 379 SCPHVYFAGNQQKF 392
+ P V+ G+ K
Sbjct: 444 TVPDVFHTGHVHKL 457
>sp|Q5ATH9|BXLB_EMENI Exo-1,4-beta-xylosidase bxlB OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bxlB
PE=1 SV=1
Length = 763
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 127 VKLGGAE-----LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
V+ GG + LL SA V IV A G + AG V DVL AP LP+
Sbjct: 521 VQFGGGQVDDSALLASAGVGAIVWA--GYPSQAGGAGVFDVLTGKAAPAGRLPITQYPKS 578
Query: 182 YV--VLVSGLNVGSGTSNP 198
YV V ++ +N+ GT NP
Sbjct: 579 YVDEVPMTDMNLQPGTDNP 597
>sp|Q0CB82|BXLB_ASPTN Probable exo-1,4-beta-xylosidase bxlB OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=bxlB PE=3 SV=1
Length = 765
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 127 VKLGGAE-----LLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDK 181
V+ GG + LL +A V G++ A G + AG V D+L AP LP+ ++
Sbjct: 525 VQFGGGQVDDSSLLSNAGVNGLLWA--GYPSQAGGAAVFDILTGKTAPAGRLPVTQYPEE 582
Query: 182 YV--VLVSGLNVGSGTSNP 198
YV V ++ +N+ G SNP
Sbjct: 583 YVDQVPMTDMNLRPGPSNP 601
>sp|P19486|EF1A_THEAC Elongation factor 1-alpha OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=tuf PE=3 SV=2
Length = 424
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 59 KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE 99
KPHL + T+ ++ G+ ++ LY+H ++ I++EY KE
Sbjct: 5 KPHLNLITIGHVDHGKSTLVGRLLYEHGEIPAHIIEEYRKE 45
>sp|A5PF48|MYO1C_DANRE Unconventional myosin-Ic OS=Danio rerio GN=myo1c PE=3 SV=1
Length = 1026
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 19/120 (15%)
Query: 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE 69
L R Q Y+ L E +++ G Y + Y A L ++L PNW +LP
Sbjct: 605 LVRHQVKYLGLMENLRVRRA---GFAYRRSYEAFLERYKSLCPDTWPNWHGNLP------ 655
Query: 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKL 129
EG + TL KH+ KP +E+ RS + P +D L + ++ V L
Sbjct: 656 --EG-----VATLVKHLNYKP---EEFKLGRSKIFIRFPRTLFITEDALEAQKQTIAVTL 705
>sp|P03313|POLG_CXB3N Genome polyprotein OS=Coxsackievirus B3 (strain Nancy) PE=1 SV=4
Length = 2185
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 272 VPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSG 328
VP+D M N+ +P PL+ C PGS TY P C E + +R G G
Sbjct: 279 VPMDNMFRHNNVTLMVIPFVPLDYC--PGSTTYVPITVTIAPMCAEYNGLRLAGHQG 333
>sp|Q66282|POLG_CXB3W Genome polyprotein OS=Coxsackievirus B3 (strain Woodruff) PE=1 SV=3
Length = 2185
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 272 VPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSG 328
VP+D M N+ +P PL+ C PGS TY P C E + +R G G
Sbjct: 279 VPMDNMFRHNNVTLMVIPFVPLDYC--PGSTTYVPITITIAPMCAEYNGLRLAGHQG 333
>sp|Q979T1|EF1A_THEVO Elongation factor 1-alpha OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=tuf
PE=3 SV=2
Length = 424
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 59 KPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKE 99
KPHL + T+ ++ G+ ++ L++H ++ I++EY KE
Sbjct: 5 KPHLNLITIGHVDHGKSTLVGRLLFEHGEIPAHIIEEYRKE 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,290,403
Number of Sequences: 539616
Number of extensions: 7864799
Number of successful extensions: 17036
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 16965
Number of HSP's gapped (non-prelim): 30
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)