Query 013632
Match_columns 439
No_of_seqs 132 out of 482
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2732 DNA polymerase delta, 100.0 3E-118 7E-123 881.8 36.1 423 10-436 4-435 (435)
2 cd07387 MPP_PolD2_C PolD2 (DNA 100.0 5.2E-82 1.1E-86 611.3 27.3 252 182-434 1-257 (257)
3 PRK04036 DNA polymerase II sma 100.0 4.1E-74 8.8E-79 607.3 39.8 365 32-435 115-503 (504)
4 COG1311 HYS2 Archaeal DNA poly 100.0 3.7E-65 8.1E-70 518.1 26.1 393 28-436 42-472 (481)
5 PF04042 DNA_pol_E_B: DNA poly 100.0 3.6E-40 7.7E-45 311.4 8.8 201 183-394 1-209 (209)
6 cd07386 MPP_DNA_pol_II_small_a 100.0 1.8E-37 3.9E-42 300.0 22.6 227 183-424 1-243 (243)
7 KOG3818 DNA polymerase epsilon 100.0 3.7E-35 8E-40 292.8 23.8 357 10-420 94-508 (525)
8 KOG1625 DNA polymerase alpha-p 100.0 2.9E-28 6.3E-33 250.1 23.5 298 71-415 242-565 (600)
9 COG5214 POL12 DNA polymerase a 99.9 2.6E-24 5.5E-29 213.4 25.6 315 72-428 201-554 (581)
10 PTZ00235 DNA polymerase epsilo 99.9 1.5E-22 3.2E-27 197.2 18.4 238 179-431 26-286 (291)
11 PRK05340 UDP-2,3-diacylglucosa 99.1 3.5E-09 7.6E-14 102.4 15.2 209 182-432 2-238 (241)
12 TIGR01854 lipid_A_lpxH UDP-2,3 99.0 4.6E-09 1E-13 101.0 11.7 200 183-425 1-229 (231)
13 PHA02546 47 endonuclease subun 98.7 5E-07 1.1E-11 91.9 16.6 117 182-325 2-127 (340)
14 cd07402 MPP_GpdQ Enterobacter 98.6 3.8E-07 8.3E-12 87.3 12.8 188 182-413 1-210 (240)
15 PRK09453 phosphodiesterase; Pr 98.3 6E-05 1.3E-09 69.6 17.7 159 182-427 2-165 (182)
16 cd07398 MPP_YbbF-LpxH Escheric 98.2 2.7E-06 5.8E-11 80.2 7.4 121 184-336 1-123 (217)
17 cd07388 MPP_Tt1561 Thermus the 98.2 2.5E-05 5.3E-10 75.1 13.9 199 180-429 4-221 (224)
18 cd07394 MPP_Vps29 Homo sapiens 98.1 0.00051 1.1E-08 63.6 19.7 148 183-428 2-158 (178)
19 PF12850 Metallophos_2: Calcin 98.1 0.00012 2.5E-09 64.9 14.6 149 182-426 2-155 (156)
20 cd00841 MPP_YfcE Escherichia c 98.1 0.00012 2.6E-09 65.4 14.2 147 182-430 1-153 (155)
21 PRK11148 cyclic 3',5'-adenosin 98.1 9.3E-05 2E-09 72.9 14.5 79 179-284 13-98 (275)
22 COG2908 Uncharacterized protei 98.0 1E-05 2.2E-10 77.5 6.9 208 184-429 1-231 (237)
23 TIGR00040 yfcE phosphoesterase 98.0 0.00077 1.7E-08 60.7 18.5 150 182-430 2-156 (158)
24 cd07399 MPP_YvnB Bacillus subt 98.0 0.00026 5.7E-09 67.3 15.1 78 182-282 2-80 (214)
25 cd07401 MPP_TMEM62_N Homo sapi 97.9 0.00031 6.8E-09 68.7 15.0 226 182-434 1-256 (256)
26 TIGR00619 sbcd exonuclease Sbc 97.9 4.1E-05 8.9E-10 74.8 8.6 104 182-315 2-111 (253)
27 cd08163 MPP_Cdc1 Saccharomyces 97.9 0.00011 2.3E-09 72.2 11.1 175 222-415 44-254 (257)
28 PRK10966 exonuclease subunit S 97.8 3.9E-05 8.5E-10 80.0 7.4 104 182-314 2-109 (407)
29 cd07395 MPP_CSTP1 Homo sapiens 97.8 0.00022 4.7E-09 69.6 12.0 145 179-353 3-159 (262)
30 cd07384 MPP_Cdc1_like Saccharo 97.7 0.00023 5E-09 65.5 10.3 58 221-287 43-103 (171)
31 cd07400 MPP_YydB Bacillus subt 97.7 0.00015 3.4E-09 63.8 7.8 74 183-283 1-80 (144)
32 cd08165 MPP_MPPE1 human MPPE1 97.6 0.0006 1.3E-08 61.7 10.2 53 221-285 36-90 (156)
33 cd00840 MPP_Mre11_N Mre11 nucl 97.5 0.0003 6.6E-09 66.1 7.9 79 182-285 1-90 (223)
34 PRK11340 phosphodiesterase Yae 97.5 0.00068 1.5E-08 66.8 10.6 102 148-284 24-125 (271)
35 COG0420 SbcD DNA repair exonuc 97.5 0.00017 3.6E-09 74.7 6.2 83 182-285 2-89 (390)
36 cd07379 MPP_239FB Homo sapiens 97.4 0.0032 7E-08 55.1 12.6 63 182-284 1-63 (135)
37 cd07391 MPP_PF1019 Pyrococcus 97.4 0.00028 6.1E-09 64.6 5.5 76 184-284 1-88 (172)
38 PF14582 Metallophos_3: Metall 97.4 0.0006 1.3E-08 65.0 7.7 222 180-431 5-252 (255)
39 cd07385 MPP_YkuE_C Bacillus su 97.4 0.00083 1.8E-08 63.5 8.8 110 181-326 2-112 (223)
40 cd07390 MPP_AQ1575 Aquifex aeo 97.3 0.0012 2.6E-08 60.3 9.1 103 184-328 2-115 (168)
41 cd07404 MPP_MS158 Microscilla 97.3 0.00081 1.7E-08 60.9 7.3 68 183-284 1-68 (166)
42 cd07383 MPP_Dcr2 Saccharomyces 97.2 0.0013 2.7E-08 61.6 8.5 79 180-283 2-88 (199)
43 COG1409 Icc Predicted phosphoh 97.2 0.0015 3.3E-08 63.6 8.8 77 182-285 2-79 (301)
44 TIGR03729 acc_ester putative p 97.2 0.0012 2.7E-08 63.6 8.0 73 182-284 1-74 (239)
45 cd00839 MPP_PAPs purple acid p 97.2 0.0087 1.9E-07 59.1 14.0 144 179-354 3-149 (294)
46 COG0622 Predicted phosphoester 97.1 0.048 1E-06 50.4 17.3 158 182-436 3-165 (172)
47 TIGR00583 mre11 DNA repair pro 97.1 0.0023 5E-08 66.7 9.3 47 180-237 3-56 (405)
48 cd07396 MPP_Nbla03831 Homo sap 97.0 0.0022 4.8E-08 62.9 8.3 113 182-331 2-123 (267)
49 PF00149 Metallophos: Calcineu 97.0 0.0024 5.3E-08 55.0 7.1 78 182-285 2-79 (200)
50 TIGR00024 SbcD_rel_arch putati 96.9 0.0021 4.5E-08 61.9 6.5 81 181-285 15-103 (225)
51 COG1311 HYS2 Archaeal DNA poly 96.8 0.0026 5.7E-08 66.6 7.2 165 33-233 101-318 (481)
52 cd07392 MPP_PAE1087 Pyrobaculu 96.7 0.011 2.4E-07 53.8 9.6 96 183-329 1-96 (188)
53 cd04490 PolII_SU_OBF PolII_SU_ 96.6 0.015 3.2E-07 46.7 8.4 52 117-168 20-78 (79)
54 cd07393 MPP_DR1119 Deinococcus 96.5 0.0088 1.9E-07 57.5 8.0 111 183-328 1-120 (232)
55 COG2129 Predicted phosphoester 96.4 0.11 2.3E-06 49.8 14.3 204 180-435 3-225 (226)
56 PLN02533 probable purple acid 96.1 0.1 2.2E-06 55.0 13.8 134 179-353 138-277 (427)
57 COG1407 Predicted ICC-like pho 96.1 0.024 5.1E-07 54.7 8.1 87 180-291 19-118 (235)
58 cd08166 MPP_Cdc1_like_1 unchar 95.5 0.022 4.7E-07 53.6 5.2 54 222-285 41-94 (195)
59 PHA02239 putative protein phos 95.1 0.086 1.9E-06 51.1 8.1 72 182-284 2-73 (235)
60 cd00838 MPP_superfamily metall 94.8 0.061 1.3E-06 44.8 5.6 69 184-282 1-69 (131)
61 cd00844 MPP_Dbr1_N Dbr1 RNA la 94.3 0.14 3E-06 50.5 7.3 98 221-329 26-124 (262)
62 COG4186 Predicted phosphoester 93.7 0.33 7.2E-06 44.0 8.0 76 181-286 4-88 (186)
63 cd07424 MPP_PrpA_PrpB PrpA and 92.9 0.31 6.7E-06 45.9 6.9 66 182-284 2-67 (207)
64 COG1408 Predicted phosphohydro 92.7 0.48 1E-05 47.3 8.2 96 153-285 22-119 (284)
65 cd07403 MPP_TTHA0053 Thermus t 92.0 1.5 3.3E-05 38.1 9.8 31 380-410 91-121 (129)
66 PF04076 BOF: Bacterial OB fol 90.5 1.1 2.3E-05 37.9 6.9 65 64-155 25-91 (103)
67 PF03100 CcmE: CcmE; InterPro 89.2 2.6 5.6E-05 37.1 8.6 72 72-163 49-120 (131)
68 PRK00166 apaH diadenosine tetr 89.1 1.4 3E-05 43.8 7.5 68 182-284 2-69 (275)
69 cd07397 MPP_DevT Myxococcus xa 88.9 1.5 3.2E-05 42.7 7.4 64 182-286 2-65 (238)
70 cd08164 MPP_Ted1 Saccharomyces 88.8 0.67 1.5E-05 43.6 4.9 54 222-285 43-112 (193)
71 TIGR00156 conserved hypothetic 88.6 3.3 7.2E-05 36.3 8.7 64 64-154 48-113 (126)
72 cd07378 MPP_ACP5 Homo sapiens 88.5 1.3 2.8E-05 43.3 6.9 54 222-285 31-84 (277)
73 KOG3662 Cell division control 88.3 3.7 7.9E-05 42.9 10.2 86 179-284 47-144 (410)
74 PRK13254 cytochrome c-type bio 87.4 4.7 0.0001 36.3 9.2 71 72-163 50-120 (148)
75 cd00842 MPP_ASMase acid sphing 86.5 2 4.4E-05 42.4 7.1 68 199-284 53-122 (296)
76 cd00144 MPP_PPP_family phospho 84.1 3.5 7.6E-05 38.7 7.1 115 185-332 2-128 (225)
77 cd04479 RPA3 RPA3: A subfamily 82.5 16 0.00034 30.6 9.6 62 72-163 14-76 (101)
78 PRK06461 single-stranded DNA-b 81.8 5.7 0.00012 34.8 7.0 81 64-159 4-87 (129)
79 PRK10053 hypothetical protein; 81.7 11 0.00024 33.2 8.7 64 64-154 52-117 (130)
80 cd07425 MPP_Shelphs Shewanella 80.4 7.6 0.00017 36.7 7.9 50 222-285 31-81 (208)
81 PRK11439 pphA serine/threonine 80.1 4.8 0.0001 38.2 6.5 43 179-236 15-57 (218)
82 PRK13150 cytochrome c-type bio 79.2 15 0.00032 33.5 8.9 47 117-163 81-127 (159)
83 cd07421 MPP_Rhilphs Rhilph pho 78.5 11 0.00023 38.0 8.5 75 182-284 3-80 (304)
84 PRK09968 serine/threonine-spec 77.5 6.8 0.00015 37.3 6.6 68 179-283 13-80 (218)
85 cd07422 MPP_ApaH Escherichia c 77.2 7.7 0.00017 38.1 7.1 66 184-284 2-67 (257)
86 KOG2863 RNA lariat debranching 75.6 5.4 0.00012 40.9 5.5 90 221-328 28-125 (456)
87 PRK13165 cytochrome c-type bio 75.5 23 0.00049 32.4 9.0 47 117-163 81-127 (160)
88 cd07423 MPP_PrpE Bacillus subt 74.7 9.8 0.00021 36.4 7.0 76 182-283 2-79 (234)
89 cd04483 hOBFC1_like hOBFC1_lik 74.5 22 0.00048 29.2 8.1 40 117-156 17-81 (92)
90 PRK08402 replication factor A; 73.1 12 0.00027 38.5 7.6 80 63-160 61-152 (355)
91 PRK07373 DNA polymerase III su 72.6 15 0.00033 39.0 8.3 75 70-163 277-358 (449)
92 PRK13625 bis(5'-nucleosyl)-tet 72.4 14 0.00031 35.7 7.5 77 182-283 2-78 (245)
93 PRK06386 replication factor A; 72.3 20 0.00043 37.0 8.8 78 63-159 106-186 (358)
94 COG2332 CcmE Cytochrome c-type 70.3 23 0.0005 31.9 7.6 73 71-163 49-121 (153)
95 COG3111 Periplasmic protein wi 69.4 23 0.0005 30.9 7.1 63 65-154 49-113 (128)
96 KOG3325 Membrane coat complex 69.1 91 0.002 28.4 14.2 123 183-399 3-126 (183)
97 KOG3770 Acid sphingomyelinase 68.8 47 0.001 36.3 10.9 80 200-296 196-276 (577)
98 PF01336 tRNA_anti-codon: OB-f 63.6 13 0.00028 28.1 4.3 37 117-153 19-59 (75)
99 cd04478 RPA2_DBD_D RPA2_DBD_D: 63.4 42 0.00091 27.0 7.5 43 117-159 19-69 (95)
100 PRK07211 replication factor A; 61.2 13 0.00029 39.8 5.1 77 65-155 270-347 (485)
101 cd04491 SoSSB_OBF SoSSB_OBF: A 59.2 32 0.00069 27.1 5.9 36 117-152 26-63 (82)
102 PRK07217 replication factor A; 58.0 50 0.0011 33.4 8.2 77 63-160 71-151 (311)
103 PRK12366 replication factor A; 57.7 26 0.00056 39.0 6.9 73 66-152 177-250 (637)
104 TIGR00668 apaH bis(5'-nucleosy 56.8 36 0.00078 33.9 7.0 66 183-283 3-68 (279)
105 PRK05673 dnaE DNA polymerase I 55.1 36 0.00078 40.5 7.8 81 64-163 968-1055(1135)
106 KOG1378 Purple acid phosphatas 54.3 1.5E+02 0.0033 31.6 11.4 137 179-354 146-287 (452)
107 cd07413 MPP_PA3087 Pseudomonas 53.5 58 0.0013 30.9 7.8 74 185-284 3-76 (222)
108 KOG1432 Predicted DNA repair e 53.5 51 0.0011 33.8 7.5 153 179-353 52-240 (379)
109 PRK05672 dnaE2 error-prone DNA 53.0 46 0.001 39.3 8.2 78 65-163 945-1029(1046)
110 cd04492 YhaM_OBF_like YhaM_OBF 52.3 49 0.0011 25.3 6.0 47 117-163 22-74 (83)
111 PRK07374 dnaE DNA polymerase I 52.1 47 0.001 39.7 8.0 79 64-163 991-1078(1170)
112 cd00845 MPP_UshA_N_like Escher 50.7 32 0.00069 32.9 5.5 47 182-237 2-51 (252)
113 PRK12366 replication factor A; 50.4 36 0.00078 37.9 6.5 77 63-153 397-475 (637)
114 cd04489 ExoVII_LU_OBF ExoVII_L 50.2 63 0.0014 24.7 6.2 49 115-163 18-75 (78)
115 PRK13159 cytochrome c-type bio 49.6 61 0.0013 29.5 6.7 46 117-163 75-120 (155)
116 cd04485 DnaE_OBF DnaE_OBF: A s 49.0 31 0.00068 26.2 4.3 46 117-162 22-74 (84)
117 PRK07218 replication factor A; 47.6 84 0.0018 33.3 8.4 79 64-159 162-243 (423)
118 PRK10917 ATP-dependent DNA hel 47.2 50 0.0011 37.0 7.1 69 64-153 50-122 (681)
119 cd04317 EcAspRS_like_N EcAspRS 46.9 1.1E+02 0.0024 26.5 7.9 59 71-153 12-76 (135)
120 PF08661 Rep_fac-A_3: Replicat 43.9 1.9E+02 0.0042 24.2 8.9 67 71-165 16-84 (109)
121 PRK15491 replication factor A; 43.0 75 0.0016 33.0 7.1 76 63-152 56-137 (374)
122 cd04488 RecG_wedge_OBF RecG_we 41.6 53 0.0012 24.4 4.5 37 117-153 21-60 (75)
123 PRK06826 dnaE DNA polymerase I 40.1 1.1E+02 0.0024 36.6 8.7 109 70-213 988-1106(1151)
124 PRK13480 3'-5' exoribonuclease 39.5 82 0.0018 31.9 6.6 81 66-165 4-90 (314)
125 PRK02983 lysS lysyl-tRNA synth 38.8 2.2E+02 0.0049 33.9 10.9 101 38-163 612-730 (1094)
126 PF09285 Elong-fact-P_C: Elong 38.7 71 0.0015 24.0 4.5 24 406-429 30-53 (56)
127 cd04316 ND_PkAspRS_like_N ND_P 36.7 1.3E+02 0.0029 24.9 6.6 59 71-153 10-76 (108)
128 PRK00484 lysS lysyl-tRNA synth 36.6 2.7E+02 0.0059 30.0 10.4 47 117-163 74-132 (491)
129 TIGR01768 GGGP-family geranylg 35.8 49 0.0011 31.9 4.1 46 260-316 43-89 (223)
130 cd05794 S1_EF-P_repeat_2 S1_EF 35.7 79 0.0017 23.7 4.3 24 406-429 30-53 (56)
131 cd07410 MPP_CpdB_N Escherichia 35.3 1.1E+02 0.0023 29.9 6.6 47 182-237 2-58 (277)
132 cd04321 ScAspRS_mt_like_N ScAs 34.5 1E+02 0.0022 24.6 5.2 37 117-153 20-62 (86)
133 PF08002 DUF1697: Protein of u 32.6 20 0.00044 31.7 0.9 45 180-234 2-46 (137)
134 PRK15491 replication factor A; 32.4 1.3E+02 0.0027 31.4 6.8 54 64-131 276-329 (374)
135 PRK06920 dnaE DNA polymerase I 31.9 1.1E+02 0.0023 36.5 6.8 73 72-163 942-1021(1107)
136 PRK05159 aspC aspartyl-tRNA sy 30.4 2E+02 0.0043 30.4 8.1 70 70-163 13-95 (437)
137 PRK14699 replication factor A; 29.4 81 0.0018 34.0 4.9 73 64-150 386-461 (484)
138 smart00841 Elong-fact-P_C Elon 27.0 69 0.0015 24.0 2.8 23 407-429 31-53 (56)
139 PRK04169 geranylgeranylglycery 27.0 94 0.002 30.1 4.5 47 259-316 47-94 (232)
140 TIGR01769 GGGP geranylgeranylg 26.6 56 0.0012 31.0 2.8 47 259-316 39-87 (205)
141 KOG1942 DNA helicase, TBP-inte 26.0 46 0.001 33.7 2.1 40 83-133 168-207 (456)
142 TIGR00643 recG ATP-dependent D 25.7 1.4E+02 0.0029 33.2 6.0 70 64-153 23-95 (630)
143 PF12997 DUF3881: Domain of un 24.9 3.4E+02 0.0075 27.1 7.9 106 119-237 31-145 (283)
144 cd04320 AspRS_cyto_N AspRS_cyt 23.9 4E+02 0.0086 21.7 8.2 37 117-153 20-66 (102)
145 cd04319 PhAsnRS_like_N PhAsnRS 23.9 2.6E+02 0.0057 22.9 6.1 38 116-153 18-62 (103)
146 PF10451 Stn1: Telomere regula 22.7 3.1E+02 0.0067 27.0 7.2 48 117-165 90-147 (256)
147 TIGR00459 aspS_bact aspartyl-t 22.7 2.8E+02 0.0061 30.7 7.6 58 71-152 13-75 (583)
148 PF11256 DUF3055: Protein of u 22.6 1.7E+02 0.0036 23.7 4.3 43 382-428 12-55 (81)
149 PRK06386 replication factor A; 22.5 3.7E+02 0.008 27.9 8.0 78 65-159 3-83 (358)
150 TIGR00499 lysS_bact lysyl-tRNA 22.5 4E+02 0.0086 28.8 8.7 67 73-163 53-132 (496)
151 PRK12445 lysyl-tRNA synthetase 22.4 4.4E+02 0.0094 28.6 8.9 68 73-164 65-145 (505)
152 COG1200 RecG RecG-like helicas 21.6 3.1E+02 0.0068 30.8 7.6 71 63-153 50-123 (677)
153 PLN02903 aminoacyl-tRNA ligase 21.3 3.9E+02 0.0084 30.0 8.4 66 64-153 63-135 (652)
154 TIGR00617 rpa1 replication fac 20.5 1.2E+02 0.0027 33.5 4.4 75 65-152 302-379 (608)
155 PRK07218 replication factor A; 20.4 3.6E+02 0.0078 28.6 7.6 79 63-159 57-138 (423)
156 PF05576 Peptidase_S37: PS-10 20.1 1.8E+02 0.0038 30.9 5.1 82 256-362 338-419 (448)
No 1
>KOG2732 consensus DNA polymerase delta, regulatory subunit 55 [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-118 Score=881.85 Aligned_cols=423 Identities=48% Similarity=0.818 Sum_probs=396.3
Q ss_pred cccceeeeccCCCCceecCCCCCchhhHHHHHHHHHHHHHHHHccccCCCCC-CCccceecccCCC-eEEEEEEEEecCC
Q 013632 10 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPH-LPICTVLELEEGR-ECVIIGTLYKHMK 87 (439)
Q Consensus 10 ~~r~~~~y~~~~~~f~l~~~~y~~~Qy~~iY~~Rl~~lr~~l~~~a~~k~~~-~~v~~l~~~~~~~-~~~viGtl~k~~~ 87 (439)
..+....|.|.|++|+|.+++| .+||+++|++||+.||++|.+.|++||+. .++.++++++.++ +|+||||+||.|+
T Consensus 4 ~r~~~~~~~n~s~~f~L~~~~y-~~Qy~~iY~aRL~elRp~i~~~A~k~wg~~~~l~~~l~l~~~~~~C~vVGTlfk~~~ 82 (435)
T KOG2732|consen 4 VRSLILNYENKSDRFRLSEKDY-SRQYFHIYFARLKELRPRILELAQKKWGSGPPLKKQLDLEKGKGECWVVGTLFKAMA 82 (435)
T ss_pred eeeccccccccccceeeccchh-HHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCchhhheeeccCCccEEEEEehhhhcc
Confidence 3445568999999999999999 99999999999999999999999999985 6789999999888 9999999999999
Q ss_pred CCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEeeCCC
Q 013632 88 LKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGL 167 (439)
Q Consensus 88 lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~~P~~ 167 (439)
+|||||+|+++|+++++++++.+|.+.+|+|+|||++|||+|.|+.+....++||+||||.|++.+.|.|.|+|+|||++
T Consensus 83 lKPsIl~~v~~e~~~~p~~~~~~y~~ped~i~LEDe~grV~L~G~~i~~~~~vTGvvvavlG~~~e~G~F~VeDv~fp~~ 162 (435)
T KOG2732|consen 83 LKPSILDEVSNEHKVAPDPEESNYHSPEDEIVLEDESGRVRLEGSFISHAVLVTGVVVAVLGKEAEAGRFLVEDVLFPGS 162 (435)
T ss_pred cCcHHHHHHhhhhccCCCCcccccCCccceEEEecCCceEEEEeecccccceeeeEEEEEecccccCceEEEEEEeccCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCC-CCCCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcc
Q 013632 168 APQ-KELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246 (439)
Q Consensus 168 ~~~-~~~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~ 246 (439)
.|| .+++... ++++|||+|||.+|+...+..++++|+|||+|.+|++.++ .++.|+|+|||||+++..+++...+..
T Consensus 163 ~pq~~P~~~~~-~~~~i~lVSGL~l~~~~~~~~~l~~l~D~l~g~lg~e~~~-~~~~i~rliv~Gn~l~~~~~~~~~~~~ 240 (435)
T KOG2732|consen 163 SPQGKPRATLP-SQRKIALVSGLDLGGGSKNLLRLELLVDWLRGQLGNEYEQ-SASSIGRLIVAGNSLSFSIKILDSQST 240 (435)
T ss_pred CccCCCCCcCC-CCCEEEEEeccccCCCcchhHHHHHHHHHHhcccCccccc-cccccceEEEeccccchhhhcccccee
Confidence 999 4444443 5689999999999998878899999999999999999888 789999999999999877665544422
Q ss_pred -----cccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCc-CCCceeecCCcEEEeCC
Q 013632 247 -----ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSAT-YNTFRSCTNPHCFELDN 320 (439)
Q Consensus 247 -----~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~-~~~~~~~tNP~~~~i~g 320 (439)
..+++.....+++++|.+|++++.+++|++|||..||++.+|||||||+|+||.+.. +++++.+||||+|++||
T Consensus 241 ~~~~~~~~~~~~~~~~v~~ld~~L~~~~~s~~VdimPG~~Dp~~~~lPqqPlh~~lfp~s~~~~~~~q~vTNPy~~~ld~ 320 (435)
T KOG2732|consen 241 SISRLTKKDSAASVIPVKELDNFLAQIPASISVDIMPGVNDPSNFMLPQQPLHRCLFPKSPQSLSTLQLVTNPYEFSLDG 320 (435)
T ss_pred eeeeccccccccccccHHHHHHHHHhccccCCccCCCCCCChhhccCCcCCcchhhhccCccccchhhcccCceEEEEcC
Confidence 234556667899999999999999999999999999999999999999999999977 89999999999999999
Q ss_pred EEEEEecCCChHHHhhccCcCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecC
Q 013632 321 VRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGS 400 (439)
Q Consensus 321 ~~~l~~sGq~i~di~k~~~~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~ 400 (439)
.+|+++|||||+|++||++.++.+++||++|+|||+|||||||||||||.++|||||++|||||+|||||+|+++.++++
T Consensus 321 ~~vl~tSGqNvsDl~ry~~~~s~ld~le~tlkw~HvaPTaPDTL~cyPftekDPFv~~~~Phvy~~GNqp~f~~r~i~~~ 400 (435)
T KOG2732|consen 321 ARVLGTSGQNVSDLLRYSSKKSGLDALENTLKWGHVAPTAPDTLWCYPFTEKDPFVMDECPHVYIVGNQPKFGTRLIEGG 400 (435)
T ss_pred EEEEecCCccHHHHhhhcchhhHHHHHhhhheeccccCCCCCcccccccccCCCeeecCCCeEEEecCCCcccceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEeee
Q 013632 401 DRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436 (439)
Q Consensus 401 ~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f~~ 436 (439)
|+.|+|||||+||+||.+|+|||+||+|++++|+.
T Consensus 401 -g~~~~Lv~VP~FskT~~~vllnL~tL~~~~v~Fd~ 435 (435)
T KOG2732|consen 401 -GKNTLLVCVPKFSKTGVAVLLNLETLACETVNFDM 435 (435)
T ss_pred -CceEEEEEcccccccceEEEEEcccccceeEeccC
Confidence 89999999999999999999999999999999973
No 2
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=100.00 E-value=5.2e-82 Score=611.28 Aligned_cols=252 Identities=57% Similarity=0.991 Sum_probs=234.9
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCC-----cccccchhhhhH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ-----NLASKDQSRLFE 256 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~-----~~~~~~~~~~~~ 256 (439)
|||||||||+|++.++.++|++|+|||+|++|+.++++.+++|+|||||||++++... ...+ ....+...++.+
T Consensus 1 ~i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (257)
T cd07387 1 YIALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQ-GKDSQTKARYLTKKSSAASVE 79 (257)
T ss_pred CEEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCccccccc-ccchhhhhhccccccchhhHH
Confidence 6999999999999888999999999999999998888889999999999999987421 1110 011223446689
Q ss_pred hHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhh
Q 013632 257 PIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK 336 (439)
Q Consensus 257 ~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k 336 (439)
++++||+||++|+++++|+||||+|||++.+|||||||+++||++++|++++++||||+|+++|++|||||||+|+||+|
T Consensus 80 ~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~k 159 (257)
T cd07387 80 AVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILK 159 (257)
T ss_pred HHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCCC
Q 013632 337 YSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET 416 (439)
Q Consensus 337 ~~~~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~t 416 (439)
|++.++++++||.+|+|||+|||||||||||||.++|||+|+++||||||||||+|+++.++|+++++||+||||+|++|
T Consensus 160 y~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP~~~~Dpfvi~~~PhVyf~Gnq~~f~t~~~~~~~~~~v~lv~vP~Fs~t 239 (257)
T cd07387 160 YSSLESRLDILERTLKWRHIAPTAPDTLWCYPFTDRDPFILEECPHVYFAGNQPKFGTKLVEGEEGQRVLLVCVPSFSKT 239 (257)
T ss_pred hCCCCCHHHHHHHHHHhcccCCCCCCccccccCCCCCceeecCCCCEEEeCCCcceeeeEEEcCCCCeEEEEEeCCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred CeEEEEECCCCCEEEEEe
Q 013632 417 GVAVVVNLKNLECHTLSF 434 (439)
Q Consensus 417 ~~~vlvnl~tl~~~~v~f 434 (439)
|++|||||+||+|++++|
T Consensus 240 ~~~vlvdl~tLe~~~v~f 257 (257)
T cd07387 240 GTAVLVNLRTLECEPISF 257 (257)
T ss_pred CEEEEEECCcCcEEEEeC
Confidence 999999999999999998
No 3
>PRK04036 DNA polymerase II small subunit; Validated
Probab=100.00 E-value=4.1e-74 Score=607.31 Aligned_cols=365 Identities=22% Similarity=0.326 Sum_probs=317.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHccccCCCCCCCccceeccc-CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCC
Q 013632 32 RGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELE-EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHN 110 (439)
Q Consensus 32 ~~~Qy~~iY~~Rl~~lr~~l~~~a~~k~~~~~v~~l~~~~-~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~ 110 (439)
+.+||+++|++||++||+++.++++.+| +.+|++++ .+++|+|||||+.. +++
T Consensus 115 ~~~~~~~~y~~R~~~L~~~l~~~~~~~~----i~~l~~~~~~~~~~~viG~v~~~-----------~~~----------- 168 (504)
T PRK04036 115 EVEDFVAYFRDRYEKLSKIIRGRVNHRP----IESLKKLKRGGEEVSIIGMVSDI-----------RST----------- 168 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccc----HHHHhcCccCCceEEEEEEEEEe-----------ecc-----------
Confidence 4589999999999999999999998774 78999998 88999999999732 111
Q ss_pred CCCCCceEEEecCCceEEEeecc----c-C-CcccccCeEEEEEeEEcCCC-cEEEEEEeeCCCCCCCCCCCCCCCCeEE
Q 013632 111 FMHPDDHLVLEDESGRVKLGGAE----L-L-PSAYVTGIVVALHGKETSAG-EFLVLDVLDAGLAPQKELPLNSGEDKYV 183 (439)
Q Consensus 111 y~~~~d~l~LED~sgRV~L~~~~----~-~-~~~lvtG~Vvav~G~~~~~g-~F~V~di~~P~~~~~~~~~~~~~~~~~i 183 (439)
.+++..++|||++|||+|.+.+ + . ...|+||+||||+|+++++| .|+|++|+||++|++.+.+... ++.+|
T Consensus 169 -~~g~~~~~LED~sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~~g~~f~v~~i~~p~~p~~~~~~~~~-~~~~i 246 (504)
T PRK04036 169 -KNGHKIVELEDTTGTFPVLIMKDREDLAELADELLLDEVIGVEGTLSGDGGLIFADEIIRPDVPRTKEPPTKD-EKVYA 246 (504)
T ss_pred -cCCceEEEEECCCCeEEEEeecchhhhhhhhhcccCceEEEEEEEEcCCCCEEEEEEEECCCCCccCCCCcCC-CccEE
Confidence 1233479999999999999842 1 2 35799999999999999888 8999999999999885554444 68999
Q ss_pred EEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHH
Q 013632 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263 (439)
Q Consensus 184 ~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 263 (439)
+|+||+|+|+..+....+++|++||+|..|+ +++.+++|+++|+|||++++ .+.++++.. +....++.++++.+++
T Consensus 247 ~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~--~~~~~~~~d~lVIaGDivd~-~~~~p~~~~-~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 247 VFISDVHVGSKEFLEDAFEKFIDWLNGEVGN--EEEIASRVKYLIIAGDLVDG-IGIYPGQEE-ELEIVDIYEQYEAAAE 322 (504)
T ss_pred EEEcccCCCCcchhHHHHHHHHHHHhCCCcc--chhhhhcCCEEEEeCccccc-ccCCccchh-hccchhhHHHHHHHHH
Confidence 9999999999877778899999999999887 45568999999999999987 455666532 2334566778999999
Q ss_pred HHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccC---c
Q 013632 264 LLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSE---A 340 (439)
Q Consensus 264 ~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~---~ 340 (439)
+|+++++.++|++|||||||++.++||||+|+++.+.... .++++++||++++++|++|+++||++++|+++|++ .
T Consensus 323 ~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~-~~v~~lsNP~~i~l~G~~iLl~HG~~idDl~~~i~~~s~ 401 (504)
T PRK04036 323 YLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPE-HNVTFVSNPALVNLHGVDVLIYHGRSIDDVISLIPGASY 401 (504)
T ss_pred HHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCc-CCeEEecCCeEEEECCEEEEEECCCCHHHHHhhcccccc
Confidence 9999999999999999999999999999999987322211 37999999999999999999999999999999975 3
Q ss_pred CCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCC------
Q 013632 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS------ 414 (439)
Q Consensus 341 ~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~------ 414 (439)
+.+.++|+.+|+|||+|||+|+|+||||. .+|||+|+++|||||+||+|+++++.++ ++++||+|+|+
T Consensus 402 ~~p~~~m~~~l~~rHlaPt~p~~~~~~p~-~~D~lvi~~~Pdv~~~GH~H~~~~~~~~-----g~~~IN~gsf~~~t~fq 475 (504)
T PRK04036 402 EKPGKAMEELLKRRHLAPIYGGRTPIAPE-KEDYLVIDEVPDIFHTGHVHINGYGKYR-----GVLLINSGTWQAQTEFQ 475 (504)
T ss_pred cCHHHHHHHHHHhcccCCCCCCCEEeCcC-CCCCEEEecCCCEEEeCCCCccceEEEC-----CEEEEECCccccccccc
Confidence 67899999999999999999999999995 7999999999999999999999999884 58999999999
Q ss_pred -------CCCeEEEEECCCCCEEEEEee
Q 013632 415 -------ETGVAVVVNLKNLECHTLSFG 435 (439)
Q Consensus 415 -------~t~~~vlvnl~tl~~~~v~f~ 435 (439)
+||++|||||+||+|++++|+
T Consensus 476 ~~~~~~p~~~~~~lv~l~tl~~~~~~f~ 503 (504)
T PRK04036 476 KRVNIVPTPARVPIVDLDTLEVTVLDFD 503 (504)
T ss_pred ceeccCCCCCEEEEEECCCCcEEEEEec
Confidence 599999999999999999996
No 4
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-65 Score=518.13 Aligned_cols=393 Identities=27% Similarity=0.381 Sum_probs=323.4
Q ss_pred CCCCCchhhHHHHHHHH-HHHHHHHHccccCCCCCCC-------ccceecccCCCeEE-EEEEEEecCCCCCChhHhhhh
Q 013632 28 KETYRGQQYSQIYFARL-HLMRALLYSLVPNWKPHLP-------ICTVLELEEGRECV-IIGTLYKHMKLKPSILDEYSK 98 (439)
Q Consensus 28 ~~~y~~~Qy~~iY~~Rl-~~lr~~l~~~a~~k~~~~~-------v~~l~~~~~~~~~~-viGtl~k~~~lkPsil~e~~~ 98 (439)
.+.| ..||++.|+.|+ +.+|++...++.++|+..+ |+.+.|++....|+ +++-+.+.++.|++-|+++-+
T Consensus 42 ~~~y-~~qy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~~d~~~~s~~~g~vedf~~~f~~R~~kL~~ii~ 120 (481)
T COG1311 42 KVDY-IIQYASIYFARLLKALRPRIIKESVKRWPDKPVLERDLDVEYLPDVRGNSTCGGIVEDFVPYFRDRYEKLSRIIR 120 (481)
T ss_pred Hhcc-ccccchHHHhhhhhhhccccchhhhhcccCccccccceeEEEccCcccccccceeHHHHHHHHHHHHHHHHHHHh
Confidence 6889 999999999999 9999999999999997643 23333444455554 466677778888888888876
Q ss_pred ccCCCCC---CCCCCCCCCCc-eEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEeeCCCCCCCC--
Q 013632 99 ERSTTPL---VKPHNFMHPDD-HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE-- 172 (439)
Q Consensus 99 e~~~~~~---~~~~~y~~~~d-~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~~P~~~~~~~-- 172 (439)
+...... ..+ .+.+++| ++.+|+.++|....|..+-.-...||.|.++.|+..+.|+|.+ |||+|.+-+...
T Consensus 121 ~~~~~~~~~~~~~-~~~~g~dv~Iig~v~~~r~t~~gh~ii~~ed~tG~v~vvl~k~~e~~~~~~-dvl~d~vig~~g~~ 198 (481)
T COG1311 121 EREEARYVSPIKK-DLEGGSDVKIIGEVNDVRETKNGHFIISLEDTTGVVTVVLGKDREAGRFVV-DVLFDEVIGVSGPV 198 (481)
T ss_pred ccccCCCcchhhc-ccccCCCcEEEEEEccceeeecccEEEEcccccceEEEEeccchhhhhhHH-hhcCCccccccCcc
Confidence 5443321 222 4555666 7888888777777776555556666777777776555566666 666655432211
Q ss_pred -------------------CCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccC
Q 013632 173 -------------------LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNS 233 (439)
Q Consensus 173 -------------------~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~ 233 (439)
.+....++.|++|+||+|+||+.|....|+.|++||+|..+ .|++++++|+|||+
T Consensus 199 t~~~~~a~~~~~p~Vpg~~~~~~~~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~------~a~~vkyliiagd~ 272 (481)
T COG1311 199 TPRSSFADRIYLPDVPGLSLNNTGDERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGD------LASRVKYLIIAGDV 272 (481)
T ss_pred CCccccCCcceeccCccccCCCCCCcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcc------cccceEEEEEeccc
Confidence 01111256799999999999999999999999999999643 79999999999999
Q ss_pred CCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCC-CcCCCceeecC
Q 013632 234 IEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS-ATYNTFRSCTN 312 (439)
Q Consensus 234 i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~-~~~~~~~~~tN 312 (439)
+|+ +++|+||+. ++.+.++.+|++.+++||.+++.+|+|++|||||||++.++||| |+..+-++ -.+.++++++|
T Consensus 273 VDG-igiYpgq~~-eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp--~~~~~~kslf~~~n~~~v~N 348 (481)
T COG1311 273 VDG-IGIYPGQEE-ELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAVRQALPQP--HFPELIKSLFSLNNLLFVSN 348 (481)
T ss_pred ccc-cccccCccc-ccccccchHHHHHHHHHHhhCCCCceEEEecCCCCccccccCCC--CcchhhcccccccceEecCC
Confidence 999 999999986 78889999999999999999999999999999999999999999 43333332 23357999999
Q ss_pred CcEEEeCCEEEEEecCCChHHHhhccCc---CCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCc
Q 013632 313 PHCFELDNVRFLGTSGQTIDDLQKYSEA---NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQ 389 (439)
Q Consensus 313 P~~~~i~g~~~l~~sGq~i~di~k~~~~---~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~ 389 (439)
|++++++|+.||++||++|+||+++.+. ++++.+|+.||+|||||||||+|+||||+. .|||+|+++||||+|||+
T Consensus 349 P~~~~l~G~~vL~~hG~sidDii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~-kD~lVIeevPDv~~~Ghv 427 (481)
T COG1311 349 PALVSLHGVDVLIYHGRSIDDIIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPET-KDYLVIEEVPDVFHTGHV 427 (481)
T ss_pred CcEEEECCEEEEEecCCCHHHHHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCC-cCceeeccCCcEEEEccc
Confidence 9999999999999999999999999984 578999999999999999999999999997 999999999999999999
Q ss_pred CccceEEEecCCCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEeee
Q 013632 390 QKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436 (439)
Q Consensus 390 ~~f~~~~~~~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f~~ 436 (439)
|.|+++.|+| .+.+...++|+|++++.+|.+|+.++.+.+++|..
T Consensus 428 h~~g~~~y~g--v~~vns~T~q~qTefqk~vni~p~~~~v~vv~~~~ 472 (481)
T COG1311 428 HKFGTGVYEG--VNLVNSGTWQEQTEFQKMVNINPTPGNVPVVDFDS 472 (481)
T ss_pred cccceeEEec--cceEEeeeecchhccceEEEecCcccceeEEeccc
Confidence 9999999986 57889999999999999999999999999999976
No 5
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=100.00 E-value=3.6e-40 Score=311.38 Aligned_cols=201 Identities=29% Similarity=0.470 Sum_probs=152.9
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
|+|+||++++++. ..++.|.+||.|.. ...++.+|||+|||++........... ...+......++.++
T Consensus 1 Iv~~Sg~~~~~~~---~~~~~L~~~l~~~~-------~~~~p~~lIl~G~fi~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 69 (209)
T PF04042_consen 1 IVFASGPFLDSDN---LSLEPLRDLLSGVE-------DASKPDVLILMGPFIDSPHPYISSGSV-PDSYSFEEDFLKELD 69 (209)
T ss_dssp EEEEES--CTTT----HHHHHHHHHHHCCC-------HCTTECEEEEES-SCBTTSHHHHHT----HHCCHHHHHHHHCH
T ss_pred CEEEecCccCCCH---hHHHHHHHHHHhcc-------ccCCCcEEEEeCCCcCccccccccccc-cccccccHHHHHHHH
Confidence 7999999999764 46999999999973 257899999999999975321111110 012333456788999
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCC-CCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcC
Q 013632 263 ILLTQIAAGVPLDIMPGPNDPANF-SLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN 341 (439)
Q Consensus 263 ~~L~~l~~~i~V~imPG~~Dp~~~-~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~ 341 (439)
+++++++++++|++|||.+||++. ++||||||++++++.+++.+++++||||+++++|++|+++||+.++||.++....
T Consensus 70 ~~~~~i~~~~~vvlvPg~~D~~~~~~lPq~pl~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d~~~~l~~~~~~~ 149 (209)
T PF04042_consen 70 SFLESILPSTQVVLVPGPNDPTSSPVLPQPPLHSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGDILDDLRRYEISK 149 (209)
T ss_dssp HHHCCCHCCSEEEEE--TTCTT-S-SCSB----TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSHHHHHHHHCCESH
T ss_pred HHHhhcccccEEEEeCCCccccccCCCCCCCCCHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCcHHHHHHhhccCC
Confidence 999999999999999999999987 9999999999999988888899999999999999999999999999999998632
Q ss_pred C------HHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCC-cCccce
Q 013632 342 D------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGN-QQKFET 394 (439)
Q Consensus 342 ~------~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn-~~~f~~ 394 (439)
+ ..++|+++|+|||+||++||+..++|+...|+|+|+.+|||+++|+ ++.|.+
T Consensus 150 ~~~~~~~~~~l~~~il~q~hl~P~~pd~~~~~~~~~~~~l~l~~~Pdili~~~~~~~F~~ 209 (209)
T PF04042_consen 150 SSSSEDRIERLMETILQQRHLYPLYPDTLPPIPWSYDDPLVLDPTPDILILPSDLPPFVK 209 (209)
T ss_dssp HHHHS-HHHHHHHHHHHCTBS-TTSSE--B-GGGGGCGCTCGCS--SEEEEEESCSSEE-
T ss_pred CcchhHHHHHHHHHHHHhhcccCCCCCCccccccCcCCCcccCCCCcEEEECCCCcCcCC
Confidence 2 3789999999999999999999999999999999999999999999 777764
No 6
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=100.00 E-value=1.8e-37 Score=299.97 Aligned_cols=227 Identities=24% Similarity=0.336 Sum_probs=189.0
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
++|+||+|+|+.......++.|++||+|... .++++++|||+||+++.. ..++++.. ........+.++.++
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~------~~~~~d~lvi~GDl~d~~-~~~~~~~~-~~~~~~~~~~~~~~~ 72 (243)
T cd07386 1 AVFISDVHVGSKTFLEDAFEKFVRWLNGEDD------SASRVKYLIIAGDLVDGI-GVYPGQEE-ELEILDIYEQYEEAA 72 (243)
T ss_pred CEEecccCCCchhhhHHHHHHHHHHHcCCcc------cccCccEEEEeCCccccc-ccCCcchh-hhhhhhHHHHHHHHH
Confidence 4799999999876666788999999998521 256899999999999873 22222211 001223446688999
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhcc---C
Q 013632 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS---E 339 (439)
Q Consensus 263 ~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~---~ 339 (439)
++|+++++.++|++||||||+.+.++||||+|++++.... ..++++++||+.++++|++|+++||++++|++++. .
T Consensus 73 ~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~-~~~v~~l~Np~~~~~~g~~i~~~~G~~~~d~~~~~~~~~ 151 (243)
T cd07386 73 EYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFL-PGNVEFVSNPALVKIHGVDVLIYHGRSIDDVVKLIPGLS 151 (243)
T ss_pred HHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcC-CCceEEeCCCCEEEECCEEEEEECCCCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999886542 34799999999999999999999999999999985 3
Q ss_pred cCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCC------
Q 013632 340 ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKF------ 413 (439)
Q Consensus 340 ~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F------ 413 (439)
.+.+.++|+++++|||+||++|++++|||. ..|||+++..||++++||+|+++++.++ +++++++|+|
T Consensus 152 ~~~~~~~~~~~l~~~hl~P~~~~~~~~~~~-~~~~~~~~~~p~vii~Gh~h~~~~~~~~-----~~~~vn~Gsf~~~~~~ 225 (243)
T cd07386 152 YDKPGKAMEELLKRRHLAPIYGGRTPIAPE-PEDYLVIDEVPDILHTGHVHVYGVGVYR-----GVLLVNSGTWQSQTEF 225 (243)
T ss_pred cccHHHHHHHHHhhcccCCCCCCCEeeCCC-CCCCEEecCCCCEEEECCCCchHhEEEC-----CEEEEECCCCcCCCCc
Confidence 455789999999999999999999999998 5999999999999999999999998763 6889999999
Q ss_pred -------CCCCeEEEEEC
Q 013632 414 -------SETGVAVVVNL 424 (439)
Q Consensus 414 -------~~t~~~vlvnl 424 (439)
.++|++.+|||
T Consensus 226 ~~~~~~~~~~~~~~~~~~ 243 (243)
T cd07386 226 QKKMNINPTPGKVPVVNL 243 (243)
T ss_pred ceeeccCCCcceeeeecC
Confidence 45566666664
No 7
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-35 Score=292.84 Aligned_cols=357 Identities=15% Similarity=0.159 Sum_probs=288.0
Q ss_pred cccceeeeccCCCCceecC--C-CC--CchhhHHHHHHHHHHHHHHHHccc-------------cC-CCCCCCccceecc
Q 013632 10 LQRKQATYIFLDEPFEIQK--E-TY--RGQQYSQIYFARLHLMRALLYSLV-------------PN-WKPHLPICTVLEL 70 (439)
Q Consensus 10 ~~r~~~~y~~~~~~f~l~~--~-~y--~~~Qy~~iY~~Rl~~lr~~l~~~a-------------~~-k~~~~~v~~l~~~ 70 (439)
++-+.++|+....+|+++. + ++ +.+..++|++.||..+.+|++++- +. ++.-.+++.|+.-
T Consensus 94 f~~prF~Yn~~~kkFvl~~k~~~~l~~~~~~ks~m~~~Ry~i~~qR~mR~e~Fq~pv~~s~~~~q~~~fklt~ienLL~t 173 (525)
T KOG3818|consen 94 FSLPRFDYNSDRKKFVLPNKPKPSLLADPSDKSDMFRQRYFIVKQRTMRNELFQPPVSGSGRCAQLKKFKLTPIENLLST 173 (525)
T ss_pred hcCCccccCchheEEEecCCCCccccCChHHHHHHHHHHHHHHHHHHHhhhccCCCccCCchhhhccccceeEHHHhhcc
Confidence 5677889999999999962 2 33 689999999999999999999832 21 1222478888876
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cCCcccccCeEEEEE
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LLPSAYVTGIVVALH 148 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~~~~lvtG~Vvav~ 148 (439)
+..+..+|.|+|.+. .++.++|||.+|.|+|+.+. ...+.+++||.|.|.
T Consensus 174 ~~~~~~lvLGlLTq~----------------------------k~G~~~lEDpsgsVqlDlsqa~fh~glf~egC~VL~E 225 (525)
T KOG3818|consen 174 RALQSFLVLGLLTQL----------------------------KEGKFHLEDPSGSVQLDLSQAKFHHGLFCEGCFVLVE 225 (525)
T ss_pred ccccceeeeehhhhc----------------------------cCCcEEEeCCCCcEEEeecccccccceeccceEEEEe
Confidence 678899999999874 47789999999999999885 456999999999999
Q ss_pred eEEcCCCcEEEEEEeeCCCCCCCC-CC-------------------------CCCCCCeEEEEEecCCCCCCCCChhHHH
Q 013632 149 GKETSAGEFLVLDVLDAGLAPQKE-LP-------------------------LNSGEDKYVVLVSGLNVGSGTSNPLQFQ 202 (439)
Q Consensus 149 G~~~~~g~F~V~di~~P~~~~~~~-~~-------------------------~~~~~~~~i~~vSgl~lgs~~~~~~~~~ 202 (439)
|.+ ++|.|.|+++.+|+..+... +. ..++++..++|+|+++++.. ..|+
T Consensus 226 G~f-~~~vf~V~~lg~PP~E~~~~tr~~~gN~n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfLSdV~LD~~----~vm~ 300 (525)
T KOG3818|consen 226 GTF-ESGVFHVNELGFPPVERREVTRKELGNLNWLGGDSKIAFKCSARLRSLEAENTDTSFVFLSDVFLDDK----KVME 300 (525)
T ss_pred eee-ecceEEEeeccCCCCCcchhHHHHhccCcccCCcchhhhHHHHHHHHHHHhCcCceEEEEehhccccH----HHHH
Confidence 999 56999999999998876532 10 12347888999999999774 5789
Q ss_pred HHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhc---CCCcEEEcCC
Q 013632 203 LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIA---AGVPLDIMPG 279 (439)
Q Consensus 203 ~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~---~~i~V~imPG 279 (439)
.|...++|+- ...+..+|+||+|.+++... .+...+.+.++.|+..|+... ...+.|++||
T Consensus 301 aL~kifqgy~--------~~pP~~iIlcG~FtS~p~~~--------~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPG 364 (525)
T KOG3818|consen 301 ALRKIFQGYK--------DAPPTAIILCGSFTSSPRQT--------SSSDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPG 364 (525)
T ss_pred HHHHHHhhcc--------CCCCeEEEEecccccccccc--------chHHHHHHHHHHHHhhccccccccccceEEEecC
Confidence 9999999972 36789999999999886431 123344567777777765443 3578999999
Q ss_pred CCCCC-CCCCCCCccccccCCCC-CcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCc----CC--HHHHHHHHH
Q 013632 280 PNDPA-NFSLPQQPLNRCLFPGS-ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA----ND--QLEFMERTL 351 (439)
Q Consensus 280 ~~Dp~-~~~lPQqpl~~~lf~~~-~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~----~~--~l~~~~~~L 351 (439)
++||+ ..+|||+||+.+++++- +..++..++||||++++..++|++++-+-+..++|++-. .+ +..+++++|
T Consensus 365 P~Dp~~~~iLPr~piP~~~~~~i~kv~~~tvfasNPcRIqy~sQEIvVfR~DL~~kfcRn~l~Fp~~~~qipq~~vkTIL 444 (525)
T KOG3818|consen 365 PNDPWVDNILPRPPIPSLFTKHISKVCKNTVFASNPCRIQYCSQEIVVFRDDLSGKFCRNSLNFPITVEQIPQHLVKTIL 444 (525)
T ss_pred CCCCCcCccCCCCCchHHHHHHHHhhcCCceeccCCeeeEeecceEEEEhHhhhhHHhhccccCCCcHHHHHHHHHHHHh
Confidence 99999 78999999999999886 455889999999999999999999999999999998631 12 456999999
Q ss_pred hccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCCCCeEE
Q 013632 352 RWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420 (439)
Q Consensus 352 ~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~t~~~v 420 (439)
.|+||+|..+.+.|.+|- -+..+-+..+|++++.|+.-+-.+.+. ..+|.+++..+|+..+..-
T Consensus 445 ~QgHLsP~p~~~~PV~WD-~D~aLsl~PlPdlmvl~Ds~~sf~~vt----~~gC~v~NPGSF~~s~~~f 508 (525)
T KOG3818|consen 445 DQGHLSPFPQHIRPVLWD-FDHALSLYPLPDLMVLADSFSSFFDVT----YAGCIVINPGSFSRSNYTF 508 (525)
T ss_pred hccccCCCccccCccccC-cccceEeccCcceEEeecccccccccc----cCCceeeCCCcccccceeE
Confidence 999999999999999984 356699999999999999865444422 2578999999998876543
No 8
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=99.96 E-value=2.9e-28 Score=250.15 Aligned_cols=298 Identities=18% Similarity=0.237 Sum_probs=213.5
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecC-----CceEEEeecccCCcccccCeEE
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE-----SGRVKLGGAELLPSAYVTGIVV 145 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~-----sgRV~L~~~~~~~~~lvtG~Vv 145 (439)
..++.++.+|+|.++.. ...+++ ++.++.||+. +.||+|+++.+....+++|+||
T Consensus 242 ~Sq~~v~avG~I~~d~~------------------~~~~kl--n~~Sv~Less~e~~~g~~Vrldls~l~e~SiFPGQIV 301 (600)
T KOG1625|consen 242 PSQSSVYAVGQIVCDST------------------KDNGKL--NEESVLLESSREDSSGVRVRLDLSRLKEYSIFPGQIV 301 (600)
T ss_pred ccccceEEEEEEecCCC------------------Cccccc--CccceEeeeccccCCCceEEeehhhccceeecCCcEE
Confidence 45778999999998730 011122 4668888875 4699999999989999999999
Q ss_pred EEEeEEcCCCcEEEEEEeeCC-CC-CCCCCCC---CCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccc
Q 013632 146 ALHGKETSAGEFLVLDVLDAG-LA-PQKELPL---NSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGI 220 (439)
Q Consensus 146 av~G~~~~~g~F~V~di~~P~-~~-~~~~~~~---~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~ 220 (439)
||+|+...++.|.|++|.-+. +| |..+... -+ ...-|+++||++..+++.....+.-|++|++
T Consensus 302 avkG~N~~G~~l~v~ki~~~~plp~~~~~~qed~~~~-~~~~ivvasGPyt~sDnl~yepL~dll~~v~----------- 369 (600)
T KOG1625|consen 302 AVKGKNPTGEKLTVEKILPIPPLPIPVQPLQEDATFE-ANTVIVVASGPYTASDNLSYEPLCDLLDYVN----------- 369 (600)
T ss_pred EEeeecCCCCeEEeeeeccCCCCCCCcCchhhhhhcc-ccceEEEEecCccCccccchhHHHHHHHHHh-----------
Confidence 999998777779999998543 33 1111111 01 1113799999999887654444444444443
Q ss_pred cCCceEEEEeccCCCcCCCCC-CCCcccccchhhhhHh-HHHHHHHHHhhcC-CCcEEEcCCCCCCC-CCCCCCCccccc
Q 013632 221 AAEIVHVVIAGNSIEIPRGLL-NGQNLASKDQSRLFEP-IKELDILLTQIAA-GVPLDIMPGPNDPA-NFSLPQQPLNRC 296 (439)
Q Consensus 221 ~~~i~~lIiaGn~i~~~~~~~-~~~~~~~~~~~~~~~~-~~~ld~~L~~l~~-~i~V~imPG~~Dp~-~~~lPQqpl~~~ 296 (439)
+.+++.||++|+|+|..+... .+.. +. .+.+. .+.+-.+|+++.. .++++++|..+|+. ..++||+||.+.
T Consensus 370 ~~~pdvLIL~GPFlD~~h~~i~~~~~----t~-t~delF~~~i~~ile~~~~~~~~vVlvPs~~Da~~~~vfPq~pf~~~ 444 (600)
T KOG1625|consen 370 AERPDVLILFGPFLDSKHPLINKGAL----TI-TFDELFEKLILGILETLVGSKTQVVLVPSTNDALCLPVFPQPPFARN 444 (600)
T ss_pred cCCCCEEEEeccccCccChhhccCCc----Cc-cHHHHHHHHHHHHHHhccCCcceEEEeccccccccCccCCCCchhhh
Confidence 468899999999999865422 1211 11 12223 2446667888864 56899999999999 689999999554
Q ss_pred cCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhcc--C-----cCCHH-HHHHHHHhccccccCCC-CCcccC
Q 013632 297 LFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYS--E-----ANDQL-EFMERTLRWRHLAPTAP-NTLGCY 367 (439)
Q Consensus 297 lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~--~-----~~~~l-~~~~~~L~~rHlaPt~P-dtl~~~ 367 (439)
-+.... +++.|+.|||.|+|||+.|.++|-+.+.++.+.. . ..+|+ ++.+|+|.|||++|.+| ..++
T Consensus 445 ~~~~~~--~~l~~~~nPc~f~in~v~vg~ts~D~l~~Ls~eE~~~~~~~~~~dR~~Rls~HlL~QrsfYPL~PP~dl~-- 520 (600)
T KOG1625|consen 445 RLSDEK--KNLKCVANPCLFSINGVEVGVTSTDTLLHLSSEEFFRNALQSNGDRLARLSSHLLTQRSFYPLFPPEDLP-- 520 (600)
T ss_pred hccCcc--cceEEccCcceEEEccEEEEeecchHHHHhhhhHhhcCCCCcchHHHHHHHHHHhhcccccccCCchhcc--
Confidence 433222 5999999999999999999999999999886532 1 34564 69999999999999999 3332
Q ss_pred CCCCC---CCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC
Q 013632 368 PFTDR---DPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE 415 (439)
Q Consensus 368 P~~~~---Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~ 415 (439)
++.. +..-|..+|||+++..--++..+.|+ +|.+|+...+++
T Consensus 521 -~s~~~~~~~~~~~~~PdIlIlPSdLr~Fvk~V~-----~~V~iNpGr~aK 565 (600)
T KOG1625|consen 521 -VSYSLLLKYAQIGSTPDILILPSDLRHFVKDVN-----GCVVINPGRLAK 565 (600)
T ss_pred -hhhhhHHHHhccCCCCcEEEechhhHHHHHhcC-----CeEEEcchhhcc
Confidence 2222 33455689999999999999999884 667777777654
No 9
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.6e-24 Score=213.43 Aligned_cols=315 Identities=22% Similarity=0.262 Sum_probs=226.2
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecC-----CceEEEeecccCCcccccCeEEE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE-----SGRVKLGGAELLPSAYVTGIVVA 146 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~-----sgRV~L~~~~~~~~~lvtG~Vva 146 (439)
.++.++++|.+.-++ +.-++.. +..+++||.. +-||+|..+.++...+++|++||
T Consensus 201 sqs~~y~vGrIv~~s-------------------~~~g~~L-n~eSv~lesSr~gg~gvrVRL~l~~l~~yS~FpGQIVa 260 (581)
T COG5214 201 SQSSFYTVGRIVNPS-------------------TNFGHKL-NSESVFLESSRDGGNGVRVRLNLAHLQRYSVFPGQIVA 260 (581)
T ss_pred ccCceEEEEEecCCC-------------------ccccccc-CcceeeeeeecccCCCeEEEeehhhccccccccccEEE
Confidence 477899999998642 1111111 4668999986 44999999988999999999999
Q ss_pred EEeEEcCCCcEEEEEEe-eCCCCCCCC---------CCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcc
Q 013632 147 LHGKETSAGEFLVLDVL-DAGLAPQKE---------LPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEK 216 (439)
Q Consensus 147 v~G~~~~~g~F~V~di~-~P~~~~~~~---------~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~ 216 (439)
|+|+..++|.|.|+.|. .|..|..+. .+..++.+.+|+..||++...+.+....++-++|+++
T Consensus 261 vKGkN~~G~~ftv~~ilpiP~~p~~p~s~~qE~~~fqan~~~q~~~iv~~sGPy~~~dd~s~~pl~~~id~vn------- 333 (581)
T COG5214 261 VKGKNTDGGKFTVEAILPIPVVPINPASDGQEKKYFQANTNNQPTSIVAFSGPYGPRDDLSGSPLFDAIDRVN------- 333 (581)
T ss_pred EecccCCCCeEEeeeeeccCCcCCCcCcchhhhhhhccccCCCceEEEEEcCCCCCccccCcChHHHHHHHhc-------
Confidence 99999888899999987 454442211 1223346678999999999776654334455555554
Q ss_pred cccccCCceEEEEeccCCCcCCCC-CCCCcccccchhhhhHh-HHHHHHHHHhhcCCCcEEEcCCCCCCC--CCCCCCCc
Q 013632 217 EQGIAAEIVHVVIAGNSIEIPRGL-LNGQNLASKDQSRLFEP-IKELDILLTQIAAGVPLDIMPGPNDPA--NFSLPQQP 292 (439)
Q Consensus 217 ~~~~~~~i~~lIiaGn~i~~~~~~-~~~~~~~~~~~~~~~~~-~~~ld~~L~~l~~~i~V~imPG~~Dp~--~~~lPQqp 292 (439)
+..++.||++|+|+|.++.. ..|.-. ...-..+.+. ++.+--+|++++.. +.+++|..+|++ ..++||-|
T Consensus 334 ----~n~vdvlIl~GPFidi~h~li~~G~~~-~t~~~~l~ElF~~r~tpiL~~~~~p-~~vLIPstnDa~s~h~a~PQ~~ 407 (581)
T COG5214 334 ----ANDVDVLILIGPFIDINHILIQYGATQ-STPDSMLKELFIPRITPILDRNAGP-KAVLIPSTNDATSCHNAFPQGP 407 (581)
T ss_pred ----cCCccEEEEeccccCcchhhhhhCCCC-CCChhHHHHHHHHhhhHHHhccCCC-ceEEeccccchhhccccCCccc
Confidence 24567999999999986542 222211 0111122333 45566688888533 799999999999 47999999
Q ss_pred cccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhc-------cCcCCHH-HHHHHHHhccccccCCCCC-
Q 013632 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY-------SEANDQL-EFMERTLRWRHLAPTAPNT- 363 (439)
Q Consensus 293 l~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~-------~~~~~~l-~~~~~~L~~rHlaPt~Pdt- 363 (439)
|.+.-+.-. +||.|..|||.|.||++.|.+++-+..-++.+. ....+++ ++.+|+|.|||++|.+|..
T Consensus 408 ~~r~al~lp---~nfkC~~NPc~F~INei~fg~Ss~Dt~l~~s~eE~f~~~l~s~g~rl~Ris~H~l~QR~fyPvFPg~~ 484 (581)
T COG5214 408 IGRNALRLP---SNFKCTGNPCEFFINEILFGISSLDTPLEISSEECFHDSLLSGGDRLGRISYHLLFQRTFYPVFPGGS 484 (581)
T ss_pred cchhhhcCC---ccccccCCcceeEeeeeEEEeccCCchhhccHHHHhccccccccchHHHHHHHHHhhceeecccCCcc
Confidence 998665443 489999999999999999999998888887542 2245665 5999999999999999975
Q ss_pred -cccCCCCCCCCee--e-----cCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC---CCeEEEEECCCCC
Q 013632 364 -LGCYPFTDRDPFL--V-----ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE---TGVAVVVNLKNLE 428 (439)
Q Consensus 364 -l~~~P~~~~Dpfv--i-----~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~---t~~~vlvnl~tl~ 428 (439)
-.|-|. +-|--- + -..||||.+..--++.++.| +.+-+++...|.+ -|+++=+-+.-||
T Consensus 485 ~~k~~ps-~ldv~~l~l~Ef~~~t~PDI~IvpS~L~hF~r~V-----~nvVvvNpG~~~k~tn~g~~a~it~~plE 554 (581)
T COG5214 485 LEKCNPS-SLDVVSLSLPEFMSMTAPDIYIVPSKLKHFCRDV-----GNVVVVNPGLQAKETNEGIAAHITLPPLE 554 (581)
T ss_pred ccccCcc-ccceEEecchhhhccCCCcEEEehHHHHHHHHhc-----CceEEECcchhhhhccccceEEEecCchh
Confidence 267774 344322 2 26899999999999999888 5777888777743 4566666665444
No 10
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=99.90 E-value=1.5e-22 Score=197.18 Aligned_cols=238 Identities=15% Similarity=0.155 Sum_probs=176.8
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
...+++++|++|+++. ..++.|...+.|+-....+ ...+..+|++|||.+.+.. +.+. ....+.+.+
T Consensus 26 ~~~~~VilSDV~LD~p----~tl~~L~kvf~~y~~~~~~---~~~P~~fVL~GnF~S~p~~-~~~~-----~~~~yk~~F 92 (291)
T PTZ00235 26 KRHNWIIMHDVYLDSP----YTFEVLDKMLSLYVNTYPE---NELPVGFIFMGDFISLKFD-YNRN-----FHKVYIKGF 92 (291)
T ss_pred CceEEEEEEeeccCCH----HHHHHHHHHHHHhhccCcc---cCCCeEEEEecCccCCccc-CCCC-----chHHHHHHH
Confidence 3567888899999885 4678888888886322111 2458999999999988643 1111 112234667
Q ss_pred HHHHH-HHHh---hcCCCcEEEcCCCCCCC--CCCCCCCccccccCCCC--------CcCCCceeecCCcEEEeCCEEEE
Q 013632 259 KELDI-LLTQ---IAAGVPLDIMPGPNDPA--NFSLPQQPLNRCLFPGS--------ATYNTFRSCTNPHCFELDNVRFL 324 (439)
Q Consensus 259 ~~ld~-~L~~---l~~~i~V~imPG~~Dp~--~~~lPQqpl~~~lf~~~--------~~~~~~~~~tNP~~~~i~g~~~l 324 (439)
+.|+. +|++ |.++.+++++||.+||+ ..+|||+|+++.+-.+- +..++++++||||++++-+++++
T Consensus 93 d~La~llls~fp~L~~~s~fVFVPGpnDPw~s~~~LPR~PIp~~f~~~~~~~~e~~~~~~~~~i~aSNPcRI~y~sqEIV 172 (291)
T PTZ00235 93 EKLSVMLISKFKLILEHCYLIFIPGINDPCACKNSIPKMPILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMI 172 (291)
T ss_pred HHHHHHHHHhChHHHhcCeEEEECCCCCCCcCcccCCCCCchHHHHHHHHHhhhhccCCCCceEEecCCcEEEecCceEE
Confidence 77776 4554 45688999999999996 46999999998662211 11258999999999999999999
Q ss_pred EecCCChHHHhhccC--c-----CCH-HHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEE
Q 013632 325 GTSGQTIDDLQKYSE--A-----NDQ-LEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRL 396 (439)
Q Consensus 325 ~~sGq~i~di~k~~~--~-----~~~-l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~ 396 (439)
+.+-+-..+|++... . .+. -.+++++|.|+||||+. ...+.+|- .+..|-|..+||+++.|+...=....
T Consensus 173 ifRdDl~~~L~r~~~i~~~~~~~~d~~~~lvkTIldQ~HL~Pl~-~~~pI~W~-yD~aL~LyPlPd~ivL~D~s~~~~~~ 250 (291)
T PTZ00235 173 FFRHDILNDLIWSSTINATNNERNNLQNILVSTIVGQSHIYPIP-HDNRILKR-YSPFLFLYPLPHFICVCDNSCNSFIS 250 (291)
T ss_pred EEeHHHHHHHhhhccCCCCCccchhHHHHHHHhhhcccccCCCc-cCCccccc-cccceeccCCCCEEEEecCCCCccce
Confidence 999999999997651 1 122 35899999999999996 55778884 46779999999999999983111112
Q ss_pred EecCCCCcEEEEecC-CCCCCCeEEEEECCCCCEEE
Q 013632 397 LKGSDRQLVRLVCIP-KFSETGVAVVVNLKNLECHT 431 (439)
Q Consensus 397 ~~~~~~~~~~lv~vP-~F~~t~~~vlvnl~tl~~~~ 431 (439)
+.+.+..+|.+++.| +|+++++.++.+..|-+++-
T Consensus 251 ~~~~~~~~~~~~Np~gsF~~~~sF~~Y~~~~~~~~~ 286 (291)
T PTZ00235 251 YASEDTSDCIISNSDMSFTRKKTFTVYSALHHEAKR 286 (291)
T ss_pred eecccCCceEEECCCCccCCCceEEEEehhcceehe
Confidence 333344688999986 99999999999999988763
No 11
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.06 E-value=3.5e-09 Score=102.43 Aligned_cols=209 Identities=17% Similarity=0.197 Sum_probs=127.4
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+++|+||+|+|... ....+.|.+||... +.+++.|+++||.++.-.+-. . .......+
T Consensus 2 ~i~~iSDlHl~~~~--~~~~~~~~~~l~~~---------~~~~d~l~i~GDl~d~~~g~~--------~---~~~~~~~~ 59 (241)
T PRK05340 2 PTLFISDLHLSPER--PAITAAFLRFLRGE---------ARQADALYILGDLFEAWIGDD--------D---PSPFAREI 59 (241)
T ss_pred cEEEEeecCCCCCC--hhHHHHHHHHHHhh---------hccCCEEEEccceeccccccC--------c---CCHHHHHH
Confidence 58999999998653 23456788888532 356899999999997522100 0 00123455
Q ss_pred HHHHHhhcCC-CcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCCh--HH-Hhhc
Q 013632 262 DILLTQIAAG-VPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTI--DD-LQKY 337 (439)
Q Consensus 262 d~~L~~l~~~-i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i--~d-i~k~ 337 (439)
.++|.++... ++|.+++||||.... ..++.. ..++..+||..+.++|.+++++||..+ +| .++.
T Consensus 60 ~~~l~~l~~~g~~v~~v~GNHD~~~~--------~~~~~~----~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~ 127 (241)
T PRK05340 60 AAALKALSDSGVPCYFMHGNRDFLLG--------KRFAKA----AGMTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQR 127 (241)
T ss_pred HHHHHHHHHcCCeEEEEeCCCchhhh--------HHHHHh----CCCEEeCCcEEEEECCEEEEEECCcccccCCHHHHH
Confidence 5666666544 899999999997421 111111 357899999999999999999999987 22 2111
Q ss_pred ----c------------CcCCHHHHHHHHHh---ccccccCCCCCcccCCCCCCCCeee-----cCCCcEEEeCCcCccc
Q 013632 338 ----S------------EANDQLEFMERTLR---WRHLAPTAPNTLGCYPFTDRDPFLV-----ESCPHVYFAGNQQKFE 393 (439)
Q Consensus 338 ----~------------~~~~~l~~~~~~L~---~rHlaPt~Pdtl~~~P~~~~Dpfvi-----~~~P~V~~~Gn~~~f~ 393 (439)
. +...++.+++.+-+ ..+. +.. .++.+.++-.+ ..-.+++++||.|.-.
T Consensus 128 ~r~~~r~~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~ 200 (241)
T PRK05340 128 FRRKVRNPWLQWLFLALPLSIRLRIAAKMRAKSKAANQ-SKS------LEIMDVNPEAVAALMEKHGVDTLIHGHTHRPA 200 (241)
T ss_pred HHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-CCc------ccccCCCHHHHHHHHHHhCCCEEEECcccCcc
Confidence 0 11122333332211 1111 111 11112221111 1246899999999766
Q ss_pred eEEEecCCCCcEEEEecCCCCCCCeEEEEECCCCCEEEE
Q 013632 394 TRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 432 (439)
Q Consensus 394 ~~~~~~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v 432 (439)
...+.. +++.++.++.|++...++.+.+|-..++....
T Consensus 201 ~~~~~~-~~~~~~~~~lgdw~~~~~~~~~~~~~~~~~~~ 238 (241)
T PRK05340 201 IHQLQA-GGQPATRIVLGDWHEQGSVLKVDADGVELIPF 238 (241)
T ss_pred eeeccC-CCcceEEEEeCCCCCCCeEEEEECCceEEEeC
Confidence 554432 23456778889999999999988877655543
No 12
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.97 E-value=4.6e-09 Score=100.99 Aligned_cols=200 Identities=17% Similarity=0.216 Sum_probs=120.4
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
.+|+||+|+|... ....+.|+++|... +.+++.||++||+++.-.+... . ....+.+.
T Consensus 1 ~~~iSDlHl~~~~--~~~~~~~l~~l~~~---------~~~~d~lii~GDi~d~~~~~~~--------~---~~~~~~~~ 58 (231)
T TIGR01854 1 TLFISDLHLSPER--PDITALFLDFLREE---------ARKADALYILGDLFEAWIGDDD--------P---STLARSVA 58 (231)
T ss_pred CeEEEecCCCCCC--hhHHHHHHHHHHhh---------hccCCEEEEcCceeccccCCCC--------C---CHHHHHHH
Confidence 3799999998753 23566788888753 2368999999999985322100 0 01234555
Q ss_pred HHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChH--HHhhcc-
Q 013632 263 ILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTID--DLQKYS- 338 (439)
Q Consensus 263 ~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~--di~k~~- 338 (439)
++|.++.. .++|.++|||||.... ..+... ..++...||..+.++|.+++++||+.+. | ..|.
T Consensus 59 ~~l~~L~~~~~~v~~v~GNHD~~~~--------~~~~~~----~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d-~~y~~ 125 (231)
T TIGR01854 59 QAIRQVSDQGVPCYFMHGNRDFLIG--------KRFARE----AGMTLLPDPSVIDLYGQKVLLMHGDTLCTDD-TAYQA 125 (231)
T ss_pred HHHHHHHHCCCeEEEEcCCCchhhh--------HHHHHH----CCCEEECCCEEEEECCEEEEEEcCccccCCC-HHHHH
Confidence 56666654 4899999999997421 111111 3688999999999999999999999873 2 1111
Q ss_pred --C-cCCH-------------HHHHHHHHhc----cccccCCCCCcccCCCCCCCC-----eeecCCCcEEEeCCcCccc
Q 013632 339 --E-ANDQ-------------LEFMERTLRW----RHLAPTAPNTLGCYPFTDRDP-----FLVESCPHVYFAGNQQKFE 393 (439)
Q Consensus 339 --~-~~~~-------------l~~~~~~L~~----rHlaPt~Pdtl~~~P~~~~Dp-----fvi~~~P~V~~~Gn~~~f~ 393 (439)
. ..++ ...+...++. .+. .-|. ...+..+ ++-..-++++++||.|.-.
T Consensus 126 ~r~~~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~ 198 (231)
T TIGR01854 126 FRAKVHQPWLQRLFLHLPLAVRVKLARKIRAESRADKQ--MKSQ-----DIMDVNPAEVAAVMRRYGVDRLIHGHTHRPA 198 (231)
T ss_pred HHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC--CCcc-----hhhCCCHHHHHHHHHHcCCCEEEECCccCcc
Confidence 0 0111 0011112211 111 1110 0011111 1112356899999999877
Q ss_pred eEEEecCCCCcEEEEecCCCCCCCeEEEEECC
Q 013632 394 TRLLKGSDRQLVRLVCIPKFSETGVAVVVNLK 425 (439)
Q Consensus 394 ~~~~~~~~~~~~~lv~vP~F~~t~~~vlvnl~ 425 (439)
....+. ++..++.++.|++.+.+++..+|-+
T Consensus 199 ~~~~~~-~~~~~~~~~lgdW~~~~~~~~~~~~ 229 (231)
T TIGR01854 199 IHPLQA-DGQPATRIVLGDWYRQGSILRVDAD 229 (231)
T ss_pred eeeccc-CCCccEEEEECCCccCCeEEEEcCC
Confidence 665532 3345678888999999999887753
No 13
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.70 E-value=5e-07 Score=91.94 Aligned_cols=117 Identities=13% Similarity=0.251 Sum_probs=71.9
Q ss_pred EEEEEecCCCCCCCCCh-------hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhh
Q 013632 182 YVVLVSGLNVGSGTSNP-------LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL 254 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~-------~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~ 254 (439)
+++++||+|+|...... ..++.+++++. ..+|+.||++||+++......
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~-----------~~~vD~VliaGDlfD~~~~~~------------- 57 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSK-----------AHGITTWIQLGDTFDVRKAIT------------- 57 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHH-----------HcCCCEEEECCcccCCCCCCC-------------
Confidence 68999999999753221 22333333332 467899999999998631110
Q ss_pred hHhHHHHHH-HHHhhc-CCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEE
Q 013632 255 FEPIKELDI-LLTQIA-AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLG 325 (439)
Q Consensus 255 ~~~~~~ld~-~L~~l~-~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~ 325 (439)
...+..+.. ++..+. ..++|+++|||||.......+......+|. .+.+++....|..+.++|+.|.+
T Consensus 58 ~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~~~~~~~~~~~~~ll~---~~~~v~v~~~~~~v~i~g~~i~~ 127 (340)
T PHA02546 58 QNTMNFVREKIFDLLKEAGITLHVLVGNHDMYYKNTIRPNAPTELLG---QYDNITVIDEPTTVDFDGCSIDL 127 (340)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEccCCCcccccccccCchHHHHh---hCCCEEEeCCceEEEECCEEEEE
Confidence 112233333 333342 368999999999985322112211123333 34578899999999999998765
No 14
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=98.63 E-value=3.8e-07 Score=87.29 Aligned_cols=188 Identities=14% Similarity=0.212 Sum_probs=106.2
Q ss_pred EEEEEecCCCCCCC-------CChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhh
Q 013632 182 YVVLVSGLNVGSGT-------SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL 254 (439)
Q Consensus 182 ~i~~vSgl~lgs~~-------~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~ 254 (439)
+++++||+|++... .....++.++++++.. ..+++.+|++||.++...
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~---------~~~~d~vi~~GDl~~~~~---------------- 55 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINAL---------HPRPDLVLVTGDLTDDGS---------------- 55 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhc---------CCCCCEEEECccCCCCCC----------------
Confidence 48999999999642 2245678888888753 257899999999987521
Q ss_pred hHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHH
Q 013632 255 FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL 334 (439)
Q Consensus 255 ~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di 334 (439)
.+.++.+.+++.++ .+++..+|||||.... -...|.... . ..-.--+.+.++|++|++..+..-..-
T Consensus 56 ~~~~~~~~~~l~~~--~~p~~~v~GNHD~~~~-------~~~~~~~~~---~-~~~~~~~~~~~~~~~~i~lds~~~~~~ 122 (240)
T cd07402 56 PESYERLRELLAAL--PIPVYLLPGNHDDRAA-------MRAVFPELP---P-APGFVQYVVDLGGWRLILLDSSVPGQH 122 (240)
T ss_pred HHHHHHHHHHHhhc--CCCEEEeCCCCCCHHH-------HHHhhcccc---c-cccccceeEecCCEEEEEEeCCCCCCc
Confidence 12345555666666 6799999999997421 011222110 0 000012467888999998765321100
Q ss_pred hhccCcCCHHHHHHHHHhccc---------cccCCCCC--cccCCCCCCCCe--eecCC--CcEEEeCCcCccceEEEec
Q 013632 335 QKYSEANDQLEFMERTLRWRH---------LAPTAPNT--LGCYPFTDRDPF--LVESC--PHVYFAGNQQKFETRLLKG 399 (439)
Q Consensus 335 ~k~~~~~~~l~~~~~~L~~rH---------laPt~Pdt--l~~~P~~~~Dpf--vi~~~--P~V~~~Gn~~~f~~~~~~~ 399 (439)
..+. .+..++.++..|+... ..|..... ...+......-| ++... ++++++||.|......+
T Consensus 123 ~~~~-~~~ql~wL~~~L~~~~~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~~-- 199 (240)
T cd07402 123 GGEL-CAAQLDWLEAALAEAPDKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGSW-- 199 (240)
T ss_pred CCEE-CHHHHHHHHHHHHhCCCCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeEE--
Confidence 0000 2335778888887652 22221111 000000000001 34444 47799999998877766
Q ss_pred CCCCcEEEEecCCC
Q 013632 400 SDRQLVRLVCIPKF 413 (439)
Q Consensus 400 ~~~~~~~lv~vP~F 413 (439)
.++.+++.|+.
T Consensus 200 ---~g~~~~~~gs~ 210 (240)
T cd07402 200 ---GGIPLLTAPST 210 (240)
T ss_pred ---CCEEEEEcCcc
Confidence 34666666653
No 15
>PRK09453 phosphodiesterase; Provisional
Probab=98.29 E-value=6e-05 Score=69.64 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=93.7
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|. + ...++.+.+++.- ..++.+|++||+++..... . .....+ .+++
T Consensus 2 ri~viSD~Hg-~----~~~~~~~l~~~~~-----------~~~d~ii~lGDi~~~~~~~--~-------~~~~~~-~~~~ 55 (182)
T PRK09453 2 KLMFASDTHG-S----LPATEKALELFAQ-----------SGADWLVHLGDVLYHGPRN--P-------LPEGYA-PKKV 55 (182)
T ss_pred eEEEEEeccC-C----HHHHHHHHHHHHh-----------cCCCEEEEcccccccCcCC--C-------CccccC-HHHH
Confidence 6899999993 2 3467788888732 3568999999998642110 0 000001 1233
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN 341 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~ 341 (439)
-++|.++ ..++.+++||||... .|.-. -++ ......+++++|.+|+++||.....
T Consensus 56 ~~~l~~~--~~~v~~V~GNhD~~~---~~~~~---~~~---------~~~~~~~~~l~g~~i~l~HG~~~~~-------- 110 (182)
T PRK09453 56 AELLNAY--ADKIIAVRGNCDSEV---DQMLL---HFP---------IMAPYQQVLLEGKRLFLTHGHLYGP-------- 110 (182)
T ss_pred HHHHHhc--CCceEEEccCCcchh---hhhcc---CCc---------ccCceEEEEECCeEEEEECCCCCCh--------
Confidence 3444444 358999999999642 11000 011 1222355889999999999954321
Q ss_pred CHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCC-----CC
Q 013632 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS-----ET 416 (439)
Q Consensus 342 ~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~-----~t 416 (439)
. .+ + .. .-.|++++||.|.-..... .++++++..|-. ..
T Consensus 111 ~--~~---------------------~-~~-------~~~d~vi~GHtH~p~~~~~-----~~~~~iNpGs~~~p~~~~~ 154 (182)
T PRK09453 111 E--NL---------------------P-AL-------HDGDVLVYGHTHIPVAEKQ-----GGIILFNPGSVSLPKGGYP 154 (182)
T ss_pred h--hc---------------------c-cc-------cCCCEEEECCCCCCcceEE-----CCEEEEECCCccccCCCCC
Confidence 0 00 0 00 1248999999997655544 256777776644 23
Q ss_pred CeEEEEECCCC
Q 013632 417 GVAVVVNLKNL 427 (439)
Q Consensus 417 ~~~vlvnl~tl 427 (439)
.+.++++..++
T Consensus 155 ~s~~il~~~~~ 165 (182)
T PRK09453 155 ASYGILDDNVL 165 (182)
T ss_pred CeEEEEECCcE
Confidence 48888887644
No 16
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.23 E-value=2.7e-06 Score=80.19 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=76.3
Q ss_pred EEEecCCCCCCCCChh-HHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 184 VLVSGLNVGSGTSNPL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 184 ~~vSgl~lgs~~~~~~-~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
+|+||+|+|....... .+..+.+++. ..++..||++||+++.-.+.... ........+.
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~-----------~~~~~~lvl~GDi~d~~~~~~~~---------~~~~~~~~~~ 60 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALA-----------LGEADALYLLGDIFDLWFGDDEV---------VPPAAHEVLA 60 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhc-----------cCCCCEEEEeccEEEEEecCCCC---------CChHHHHHHH
Confidence 5899999998654322 2333322221 14679999999999753211100 0001112245
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCc-EEEeCCEEEEEecCCChHHHhh
Q 013632 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPH-CFELDNVRFLGTSGQTIDDLQK 336 (439)
Q Consensus 263 ~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~-~~~i~g~~~l~~sGq~i~di~k 336 (439)
.++......++|..++||||..- .+. + ... ..+....+|. .+.++|.+++++||..++....
T Consensus 61 ~l~~~~~~~~~v~~v~GNHD~~~---~~~-~----~~~----~~~~~~~~~~~~~~~~g~~~~~~HG~~~d~~~~ 123 (217)
T cd07398 61 ALLRLADRGTRVYYVPGNHDFLL---GDF-F----AEE----LGLILLPDPLVHLELDGKRILLEHGDQFDTDDR 123 (217)
T ss_pred HHHHHHHCCCeEEEECCCchHHH---HhH-H----HHH----cCCEEeccceEEEeeCCeEEEEECCCcCchhHH
Confidence 56666677889999999999852 111 1 011 1456678888 8999999999999999886643
No 17
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.23 E-value=2.5e-05 Score=75.08 Aligned_cols=199 Identities=17% Similarity=0.205 Sum_probs=108.2
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
..+|+.+||+|= +...++.+.+++.- ..++.+|++||+.+... ..+
T Consensus 4 ~~kIl~iSDiHg-----n~~~le~l~~~~~~-----------~~~D~vv~~GDl~~~g~------------------~~~ 49 (224)
T cd07388 4 VRYVLATSNPKG-----DLEALEKLVGLAPE-----------TGADAIVLIGNLLPKAA------------------KSE 49 (224)
T ss_pred eeEEEEEEecCC-----CHHHHHHHHHHHhh-----------cCCCEEEECCCCCCCCC------------------CHH
Confidence 467999999992 25678888887531 34789999999986410 123
Q ss_pred HHHHHHHhhcC-CCcEEEcCCCCCCC-CCCCCCCccc-cccCCCCCcCCCceeecCCcEEEeCC-EEEEEecCCChHHHh
Q 013632 260 ELDILLTQIAA-GVPLDIMPGPNDPA-NFSLPQQPLN-RCLFPGSATYNTFRSCTNPHCFELDN-VRFLGTSGQTIDDLQ 335 (439)
Q Consensus 260 ~ld~~L~~l~~-~i~V~imPG~~Dp~-~~~lPQqpl~-~~lf~~~~~~~~~~~~tNP~~~~i~g-~~~l~~sGq~i~di~ 335 (439)
.+..++..+.. .+++..+|||+|.. ...+.+ .+. ...||. ...+.+ ..+.+.| +.|+|..|.+... .
T Consensus 50 ~~~~~l~~l~~l~~pv~~V~GNhD~~v~~~l~~-~~~~~~~~p~------~~~lh~-~~~~~~g~~~~~GlGGs~~~~-~ 120 (224)
T cd07388 50 DYAAFFRILGEAHLPTFYVPGPQDAPLWEYLRE-AYNAELVHPE------IRNVHE-TFAFWRGPYLVAGVGGEIADE-G 120 (224)
T ss_pred HHHHHHHHHHhcCCceEEEcCCCChHHHHHHHH-HhcccccCcc------ceecCC-CeEEecCCeEEEEecCCcCCC-C
Confidence 34445544433 46999999999963 011111 000 001122 111222 2555644 8999999887553 1
Q ss_pred hccCcCCHHHH----HHHHHhccccccCCCCCccc-CCCCCC-----C-----CeeecCCCcEEEeCCcCccceEEEecC
Q 013632 336 KYSEANDQLEF----MERTLRWRHLAPTAPNTLGC-YPFTDR-----D-----PFLVESCPHVYFAGNQQKFETRLLKGS 400 (439)
Q Consensus 336 k~~~~~~~l~~----~~~~L~~rHlaPt~Pdtl~~-~P~~~~-----D-----pfvi~~~P~V~~~Gn~~~f~~~~~~~~ 400 (439)
.++..+ .+++ ++.+|++-.-.+..++-|-+ .|-... . .||=..-|.+.+|||.| .+...+
T Consensus 121 e~sE~e-~~~~~~~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~h~GS~alr~~I~~~~P~l~i~GHih-~~~~~~--- 195 (224)
T cd07388 121 EPEEHE-ALRYPAWVAEYRLKALWELKDYRKVFLFHTPPYHKGLNEQGSHEVAHLIKTHNPLVVLVGGKG-QKHELL--- 195 (224)
T ss_pred CcCHHH-HhhhhhhHHHHHHHHHHhCCCCCeEEEECCCCCCCCCCccCHHHHHHHHHHhCCCEEEEcCCc-eeEEEe---
Confidence 221111 1111 12222211111333444333 221111 1 13334579999999998 444322
Q ss_pred CCCcEEEEecCCCCCCCeEEEEECCCCCE
Q 013632 401 DRQLVRLVCIPKFSETGVAVVVNLKNLEC 429 (439)
Q Consensus 401 ~~~~~~lv~vP~F~~t~~~vlvnl~tl~~ 429 (439)
.+|.+|+..++++. ..+++|++.-++
T Consensus 196 --g~t~vvNpg~~~~g-~~a~i~~~~~~v 221 (224)
T cd07388 196 --GASWVVVPGDLSEG-RYALLDLRARKL 221 (224)
T ss_pred --CCEEEECCCcccCC-cEEEEEecCcce
Confidence 37789998887666 557899876443
No 18
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.11 E-value=0.00051 Score=63.59 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=93.8
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
|+++||-|++.... ...+.+.+++.. .+++.+|.|||+++. ...
T Consensus 2 i~viSDtHl~~~~~--~~~~~~~~~~~~-----------~~~d~iih~GDi~~~-----------------------~~~ 45 (178)
T cd07394 2 VLVIGDLHIPHRAS--DLPAKFKKLLVP-----------GKIQHVLCTGNLCSK-----------------------ETY 45 (178)
T ss_pred EEEEEecCCCCCch--hhHHHHHHHhcc-----------CCCCEEEECCCCCCH-----------------------HHH
Confidence 78999999997542 233456677643 346899999998642 112
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcCC
Q 013632 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAND 342 (439)
Q Consensus 263 ~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~~ 342 (439)
.+|.++. .++..+.||+|... -+|.. ..+.++|.+|+++||.... ...
T Consensus 46 ~~l~~~~--~~~~~V~GN~D~~~-----------~lp~~------------~~~~~~g~~i~l~HG~~~~------~~~- 93 (178)
T cd07394 46 DYLKTIA--PDVHIVRGDFDENL-----------NYPET------------KVITVGQFKIGLIHGHQVV------PWG- 93 (178)
T ss_pred HHHHhhC--CceEEEECCCCccc-----------cCCCc------------EEEEECCEEEEEEECCcCC------CCC-
Confidence 2334442 36899999999642 12211 3589999999999996421 000
Q ss_pred HHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC-------
Q 013632 343 QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE------- 415 (439)
Q Consensus 343 ~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~------- 415 (439)
..+.+..+.+ ..-+||+++||.|......+ .++++++..|-+.
T Consensus 94 ~~~~~~~~~~-------------------------~~~~dvii~GHTH~p~~~~~-----~g~~viNPGSv~~~~~~~~~ 143 (178)
T cd07394 94 DPDSLAALQR-------------------------QLDVDILISGHTHKFEAFEH-----EGKFFINPGSATGAFSPLDP 143 (178)
T ss_pred CHHHHHHHHH-------------------------hcCCCEEEECCCCcceEEEE-----CCEEEEECCCCCCCCCCCCC
Confidence 1111111111 11238999999998776655 3578999888762
Q ss_pred --CCeEEEEECCCCC
Q 013632 416 --TGVAVVVNLKNLE 428 (439)
Q Consensus 416 --t~~~vlvnl~tl~ 428 (439)
..+.+++++.+-.
T Consensus 144 ~~~~syail~~~~~~ 158 (178)
T cd07394 144 NVIPSFVLMDIQGSK 158 (178)
T ss_pred CCCCeEEEEEecCCe
Confidence 3488888886544
No 19
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.09 E-value=0.00012 Score=64.87 Aligned_cols=149 Identities=15% Similarity=0.240 Sum_probs=89.4
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|.+.. .++.+++.+ .+++.+|++||+++. +++
T Consensus 2 ki~~~sD~H~~~~-----~~~~~~~~~-------------~~~d~vi~~GDi~~~----------------------~~~ 41 (156)
T PF12850_consen 2 KIAVISDLHGNLD-----ALEAVLEYI-------------NEPDFVIILGDIFDP----------------------EEV 41 (156)
T ss_dssp EEEEEE--TTTHH-----HHHHHHHHH-------------TTESEEEEES-SCSH----------------------HHH
T ss_pred EEEEEeCCCCChh-----HHHHHHHHh-------------cCCCEEEECCCchhH----------------------HHH
Confidence 6899999999543 466666665 237899999998752 222
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN 341 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~ 341 (439)
-+.++++ ++..++||||-.. |+... ......+-..+.+++.+++.+||...... .
T Consensus 42 ~~~~~~~----~~~~v~GNHD~~~------------~~~~~---~~~~~~~~~~~~~~~~~i~~~H~~~~~~~------~ 96 (156)
T PF12850_consen 42 LELLRDI----PVYVVRGNHDNWA------------FPNEN---DEEYLLDALRLTIDGFKILLSHGHPYDVQ------W 96 (156)
T ss_dssp HHHHHHH----EEEEE--CCHSTH------------HHSEE---CTCSSHSEEEEEETTEEEEEESSTSSSST------T
T ss_pred HHHHhcC----CEEEEeCCccccc------------chhhh---hccccccceeeeecCCeEEEECCCCcccc------c
Confidence 2233444 8999999999321 11110 01115666678889999999999665511 1
Q ss_pred CHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC-----C
Q 013632 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE-----T 416 (439)
Q Consensus 342 ~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~-----t 416 (439)
.. +.+...+ ...-++++++||.|....... .++.+++.++... .
T Consensus 97 ~~-~~~~~~~-------------------------~~~~~~~~~~GH~H~~~~~~~-----~~~~~~~~Gs~~~~~~~~~ 145 (156)
T PF12850_consen 97 DP-AELREIL-------------------------SRENVDLVLHGHTHRPQVFKI-----GGIHVINPGSIGGPRHGDQ 145 (156)
T ss_dssp TH-HHHHHHH-------------------------HHTTSSEEEESSSSSEEEEEE-----TTEEEEEE-GSSS-SSSSS
T ss_pred Ch-hhhhhhh-------------------------cccCCCEEEcCCcccceEEEE-----CCEEEEECCcCCCCCCCCC
Confidence 11 1111111 134478899999998776543 3567777776644 7
Q ss_pred CeEEEEECCC
Q 013632 417 GVAVVVNLKN 426 (439)
Q Consensus 417 ~~~vlvnl~t 426 (439)
++.+++++++
T Consensus 146 ~~~~i~~~~~ 155 (156)
T PF12850_consen 146 SGYAILDIED 155 (156)
T ss_dssp EEEEEEEETT
T ss_pred CEEEEEEEec
Confidence 8899998876
No 20
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.06 E-value=0.00012 Score=65.40 Aligned_cols=147 Identities=13% Similarity=0.087 Sum_probs=91.3
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|... ..++.+++.+. +++.+|++||+++.... . .
T Consensus 1 ~i~~isD~H~~~-----~~~~~~~~~~~-------------~~d~ii~~GD~~~~~~~----------~------~---- 42 (155)
T cd00841 1 KIGVISDTHGSL-----ELLEKALELFG-------------DVDLIIHAGDVLYPGPL----------N------E---- 42 (155)
T ss_pred CEEEEecCCCCH-----HHHHHHHHHhc-------------CCCEEEECCcccccccc----------c------h----
Confidence 489999999632 35555555542 26899999998865210 0 0
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN 341 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~ 341 (439)
+....++..++||||.... +...+....+.++|.+|+++||-.....
T Consensus 43 ------~~~~~~~~~V~GNhD~~~~--------------------~~~~p~~~~~~~~g~~i~v~Hg~~~~~~------- 89 (155)
T cd00841 43 ------LELKAPVIAVRGNCDGEVD--------------------FPILPEEAVLEIGGKRIFLTHGHLYGVK------- 89 (155)
T ss_pred ------hhcCCcEEEEeCCCCCcCC--------------------cccCCceEEEEECCEEEEEECCcccccc-------
Confidence 2234589999999998643 0112233457889999999999653321
Q ss_pred CHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC-----C
Q 013632 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE-----T 416 (439)
Q Consensus 342 ~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~-----t 416 (439)
...+. . .+.-..-.+++++||.|....... .++++++..+... .
T Consensus 90 ~~~~~-~-------------------------~~~~~~~~d~vi~GHtH~~~~~~~-----~~~~~inpGs~~~~~~~~~ 138 (155)
T cd00841 90 NGLDR-L-------------------------YLAKEGGADVVLYGHTHIPVIEKI-----GGVLLLNPGSLSLPRGGGP 138 (155)
T ss_pred cchhh-h-------------------------hhhhhcCCCEEEECcccCCccEEE-----CCEEEEeCCCccCcCCCCC
Confidence 00000 0 000112348999999998776544 3567777765543 3
Q ss_pred CeEEEEECCC-CCEE
Q 013632 417 GVAVVVNLKN-LECH 430 (439)
Q Consensus 417 ~~~vlvnl~t-l~~~ 430 (439)
++.+++++.. ++++
T Consensus 139 ~~~~i~~~~~~~~~~ 153 (155)
T cd00841 139 PTYAILEIDDKGEVE 153 (155)
T ss_pred CeEEEEEecCCCcEE
Confidence 5889999884 4443
No 21
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.06 E-value=9.3e-05 Score=72.93 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCeEEEEEecCCCCCCC-------CChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccch
Q 013632 179 EDKYVVLVSGLNVGSGT-------SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~-------~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~ 251 (439)
.+-+++.+||+|+.... .....++..++.++.. ..+++.||++||.++...
T Consensus 13 ~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~---------~~~~D~vvitGDl~~~~~------------- 70 (275)
T PRK11148 13 ARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQ---------QHEFDLIVATGDLAQDHS------------- 70 (275)
T ss_pred CCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhh---------CCCCCEEEECCCCCCCCC-------------
Confidence 46789999999985421 1234677778777642 246899999999987421
Q ss_pred hhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 252 SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 252 ~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
.+.++.+-+.|+++ .+++.++|||||..
T Consensus 71 ---~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~ 98 (275)
T PRK11148 71 ---SEAYQHFAEGIAPL--RKPCVWLPGNHDFQ 98 (275)
T ss_pred ---HHHHHHHHHHHhhc--CCcEEEeCCCCCCh
Confidence 13455566667776 46999999999974
No 22
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=1e-05 Score=77.48 Aligned_cols=208 Identities=17% Similarity=0.208 Sum_probs=119.2
Q ss_pred EEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHH
Q 013632 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263 (439)
Q Consensus 184 ~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 263 (439)
+||||||+|-+. ...-+.|.+||... +++-+.|.|.||+++.=++- +... +.-+++..
T Consensus 1 lFISDlHL~~~~--p~~t~~fl~Fl~~~---------a~~ad~lyilGDifd~w~g~--------~~~~---~~~~~V~~ 58 (237)
T COG2908 1 LFISDLHLGPKR--PALTAFFLDFLREE---------AAQADALYILGDIFDGWIGD--------DEPP---QLHRQVAQ 58 (237)
T ss_pred CeeeccccCCCC--cHHHHHHHHHHHhc---------cccCcEEEEechhhhhhhcC--------Cccc---HHHHHHHH
Confidence 489999999443 35677899999875 34558999999999864331 1111 12233333
Q ss_pred HHHhh-cCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhh-ccC--
Q 013632 264 LLTQI-AAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQK-YSE-- 339 (439)
Q Consensus 264 ~L~~l-~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k-~~~-- 339 (439)
-|..+ ...++|..||||||--- ...|. .....+.+++-|..+.++|.++|+.||+.+.-... |.-
T Consensus 59 ~l~~~a~~G~~v~~i~GN~Dfll---------~~~f~--~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r 127 (237)
T COG2908 59 KLLRLARKGTRVYYIHGNHDFLL---------GKRFA--QEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFR 127 (237)
T ss_pred HHHHHHhcCCeEEEecCchHHHH---------HHHHH--hhcCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHH
Confidence 33334 34689999999999431 11111 22345889999999999999999999998763332 210
Q ss_pred --cCCH---HHHHHHHHhccc--cccC------CCCCccc-CCCCCC-CCeeec----CCCcEEEeCCcCccceEEEecC
Q 013632 340 --ANDQ---LEFMERTLRWRH--LAPT------APNTLGC-YPFTDR-DPFLVE----SCPHVYFAGNQQKFETRLLKGS 400 (439)
Q Consensus 340 --~~~~---l~~~~~~L~~rH--laPt------~Pdtl~~-~P~~~~-Dpfvi~----~~P~V~~~Gn~~~f~~~~~~~~ 400 (439)
...+ .-++-..++||. ..|. .++.+.. +-+.+. --.+.+ .-=+-+++||.|......+.+
T Consensus 128 ~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~- 206 (237)
T COG2908 128 YKVHWAWLQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPG- 206 (237)
T ss_pred HHcccHHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCC-
Confidence 1111 112222222221 1111 1111100 000000 001111 123677899999988776643
Q ss_pred CCCcEEEEecCCCCCCCeEEEEECCCCCE
Q 013632 401 DRQLVRLVCIPKFSETGVAVVVNLKNLEC 429 (439)
Q Consensus 401 ~~~~~~lv~vP~F~~t~~~vlvnl~tl~~ 429 (439)
++-+..++|-..+.++-++=..++-
T Consensus 207 ----~~yi~lGdW~~~~s~~~v~~~~~~~ 231 (237)
T COG2908 207 ----ITYINLGDWVSEGSILEVDDGGLEL 231 (237)
T ss_pred ----ceEEecCcchhcceEEEEecCcEEE
Confidence 5566668998777777777655543
No 23
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.01 E-value=0.00077 Score=60.68 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=90.4
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|.... .++.+.+++.- .++++.+|.+||.++. +.+
T Consensus 2 ~i~viSD~H~~~~-----~~~~~~~~~~~----------~~~~d~ii~~GD~~~~-------------------~~~--- 44 (158)
T TIGR00040 2 KILVISDTHGPLR-----ATELPVELFNL----------ESNVDLVIHAGDLTSP-------------------FVL--- 44 (158)
T ss_pred EEEEEecccCCcc-----hhHhHHHHHhh----------ccCCCEEEEcCCCCCH-------------------HHH---
Confidence 5899999996432 35556666542 1357999999998721 111
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN 341 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~ 341 (439)
++|.++ ..++..++||||-....+| .-..++++|.+|+++||.... +..
T Consensus 45 -~~l~~~--~~~~~~V~GN~D~~~~~~~----------------------~~~~~~~~g~~i~l~Hg~~~~------~~~ 93 (158)
T TIGR00040 45 -KEFEDL--AAKVIAVRGNNDGERDELP----------------------EEEIFEAEGIDFGLVHGDLVY------PRG 93 (158)
T ss_pred -HHHHHh--CCceEEEccCCCchhhhCC----------------------cceEEEECCEEEEEEeCcccc------cCC
Confidence 223333 3379999999997422222 113588899999999997511 111
Q ss_pred CHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCC-----CCCC
Q 013632 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPK-----FSET 416 (439)
Q Consensus 342 ~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~-----F~~t 416 (439)
+. +.++.+. -..-.+++++||.|......+. ++.+++.++ +...
T Consensus 94 ~~-~~l~~~~-------------------------~~~~~d~vi~GHtH~~~~~~~~-----~~~~iNpGs~~~~~~~~~ 142 (158)
T TIGR00040 94 DL-LVLEYLA-------------------------KELGVDVLIFGHTHIPVAEELR-----GILLINPGSLTGPRNGNT 142 (158)
T ss_pred CH-HHHHHHH-------------------------hccCCCEEEECCCCCCccEEEC-----CEEEEECCccccccCCCC
Confidence 11 1111110 0112378999999977766553 455666554 3335
Q ss_pred CeEEEEECCCCCEE
Q 013632 417 GVAVVVNLKNLECH 430 (439)
Q Consensus 417 ~~~vlvnl~tl~~~ 430 (439)
.+..++++.+-+.+
T Consensus 143 ~~~~il~~~~~~~~ 156 (158)
T TIGR00040 143 PSYAILDVDKDKVT 156 (158)
T ss_pred CeEEEEEecCCeEE
Confidence 68888888776544
No 24
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.96 E-value=0.00026 Score=67.29 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=58.3
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+++++||++.+... ....++..++||.... ...+++.+|++||.++.... ...+..+
T Consensus 2 ~~~~~~D~q~~~~~-~~~~~~~~~~~i~~~~-------~~~~~d~iv~~GDl~~~~~~---------------~~~~~~~ 58 (214)
T cd07399 2 TLAVLPDTQYYTES-YPEVFDAQTDWIVDNA-------EALNIAFVLHLGDIVDDGDN---------------DAEWEAA 58 (214)
T ss_pred EEEEecCCCcCCcC-CHHHHHHHHHHHHHHH-------HHcCCCEEEECCCccCCCCC---------------HHHHHHH
Confidence 58999999998763 3667777888887542 13568999999999975310 1345666
Q ss_pred HHHHHhhc-CCCcEEEcCCCCC
Q 013632 262 DILLTQIA-AGVPLDIMPGPND 282 (439)
Q Consensus 262 d~~L~~l~-~~i~V~imPG~~D 282 (439)
.+++..+. ..+++.++|||||
T Consensus 59 ~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 59 DKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred HHHHHHHHHcCCcEEEECCCCc
Confidence 67777775 5689999999999
No 25
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.91 E-value=0.00031 Score=68.67 Aligned_cols=226 Identities=17% Similarity=0.136 Sum_probs=107.3
Q ss_pred EEEEEecCCCCCCCCCh-hHH-HHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 182 YVVLVSGLNVGSGTSNP-LQF-QLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~-~~~-~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
+++.+||+|+|...... ... +.+.++++. .+++.+|++||.++..... +.. . .....+.+
T Consensus 1 ~~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~-----------~~pd~i~~~GD~~d~~~~~--~~~--~---~~~~~~~~ 62 (256)
T cd07401 1 WFVHISDIHVSSFHPPNRAQDETFCSNFIDV-----------IKPALVLATGDLTDNKTGN--KLP--S---YQYQEEWQ 62 (256)
T ss_pred CEEEecccccCCcCchhhhhHHHHHHHHHHh-----------hCCCEEEEccccccccccC--CCc--c---cccHHHHH
Confidence 47899999999753211 112 446677654 4689999999999764211 000 0 00011122
Q ss_pred HHHHHHHhhcC--CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCC-cEE--EeCCEEEEEecCCChHHH
Q 013632 260 ELDILLTQIAA--GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNP-HCF--ELDNVRFLGTSGQTIDDL 334 (439)
Q Consensus 260 ~ld~~L~~l~~--~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP-~~~--~i~g~~~l~~sGq~i~di 334 (439)
.+-+.+..... .+++..+|||||..+....+.+.. .|.+ |......+.. +.. +.+++.|++.......+-
T Consensus 63 ~~~~~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~--~~~~---y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~ 137 (256)
T cd07401 63 KYYNILKESSVINKEKWFDIRGNHDLFNIPSLDSENN--YYRK---YSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGP 137 (256)
T ss_pred HHHHHHHHhCCCCcceEEEeCCCCCcCCCCCccchhh--HHHH---hheecCCCccceEEEecCCCEEEEEEcCccCCCC
Confidence 22223333222 579999999999964332332222 1211 1111111112 222 248899888876542111
Q ss_pred h---hccC--cCCHHHHHHHHHhccccccCCCCC-ccc-CCCCCCCCe----------eec-CCCcEEEeCCcCccce-E
Q 013632 335 Q---KYSE--ANDQLEFMERTLRWRHLAPTAPNT-LGC-YPFTDRDPF----------LVE-SCPHVYFAGNQQKFET-R 395 (439)
Q Consensus 335 ~---k~~~--~~~~l~~~~~~L~~rHlaPt~Pdt-l~~-~P~~~~Dpf----------vi~-~~P~V~~~Gn~~~f~~-~ 395 (439)
. .+.. .+..++.++..|+.. |..+-. +-| +|...-++. +|. .-.+++++||.|..+. .
T Consensus 138 ~~~~~~~g~l~~~ql~wL~~~L~~~---~~~~~~IV~~HhP~~~~~~~~~~~~~~~~~ll~~~~v~~vl~GH~H~~~~~~ 214 (256)
T cd07401 138 KRPFNFFGSLDKKLLDRLEKELEKS---TNSNYTIWFGHYPTSTIISPSAKSSSKFKDLLKKYNVTAYLCGHLHPLGGLE 214 (256)
T ss_pred CCCCceeccCCHHHHHHHHHHHHhc---ccCCeEEEEEcccchhccCCCcchhHHHHHHHHhcCCcEEEeCCccCCCcce
Confidence 0 0111 133566676666532 111111 111 332111111 122 3467899999998887 3
Q ss_pred EEecCCCCcEEEEecCCCCCCCe----EEEEECCCCCEEEEEe
Q 013632 396 LLKGSDRQLVRLVCIPKFSETGV----AVVVNLKNLECHTLSF 434 (439)
Q Consensus 396 ~~~~~~~~~~~lv~vP~F~~t~~----~vlvnl~tl~~~~v~f 434 (439)
.+.- ++-.--+|+=|.=++--+ .-..|...-.++++.|
T Consensus 215 p~h~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~f 256 (256)
T cd07401 215 PVHY-AGHPYALITNPKPSLYLAPVHEPSNFNLHSTHIRVLSF 256 (256)
T ss_pred eeee-cCCceEEEeCCCChHHcCcccccccccccCCceEEEeC
Confidence 3321 111223444442222111 3445555555666555
No 26
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.90 E-value=4.1e-05 Score=74.80 Aligned_cols=104 Identities=14% Similarity=0.212 Sum_probs=64.5
Q ss_pred EEEEEecCCCCCCCCChhH---HHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 182 YVVLVSGLNVGSGTSNPLQ---FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~---~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
+++++||+|+|........ ...+++|+...+ ...+++.|||+||+++.... .....
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~D~lli~GDi~d~~~p--------------~~~~~ 60 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFA-------KAEQIDALLVAGDVFDTANP--------------PAEAQ 60 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHH-------HHcCCCEEEECCccCCCCCC--------------CHHHH
Confidence 6899999999975322111 122334443321 13468999999999986321 11345
Q ss_pred HHHHHHHHhhcC-C-CcEEEcCCCCCCCCC-CCCCCccccccCCCCCcCCCceeecCCcE
Q 013632 259 KELDILLTQIAA-G-VPLDIMPGPNDPANF-SLPQQPLNRCLFPGSATYNTFRSCTNPHC 315 (439)
Q Consensus 259 ~~ld~~L~~l~~-~-i~V~imPG~~Dp~~~-~lPQqpl~~~lf~~~~~~~~~~~~tNP~~ 315 (439)
+.++.+|..+.. . ++|.+++||||.... ..++ .++.. .+++..++|..
T Consensus 61 ~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~~~-----~l~~~----~~v~i~~~~~~ 111 (253)
T TIGR00619 61 ELFNAFFRNLSDANPIPIVVISGNHDSAQRLSAAK-----KLLIE----LGVFVVGFPVG 111 (253)
T ss_pred HHHHHHHHHHHhcCCceEEEEccCCCChhhcccch-----hHHHh----CCeEEEEeccc
Confidence 667788888754 3 899999999998743 2222 22221 36777777764
No 27
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=97.88 E-value=0.00011 Score=72.17 Aligned_cols=175 Identities=12% Similarity=0.173 Sum_probs=97.1
Q ss_pred CCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCC--CCCCCccccccCC
Q 013632 222 AEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANF--SLPQQPLNRCLFP 299 (439)
Q Consensus 222 ~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~--~lPQqpl~~~lf~ 299 (439)
-+++.+|+.||.++..... +-....+.++.|-+++..+...+++..+|||||-.-. ..+ +++
T Consensus 44 l~PD~vv~lGDL~d~G~~~---------~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~-~~~------ 107 (257)
T cd08163 44 LKPDSTIFLGDLFDGGRDW---------ADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVL-PVR------ 107 (257)
T ss_pred cCCCEEEEecccccCCeeC---------cHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCH-HHH------
Confidence 4689999999999863110 1111223355555555555546799999999996411 100 001
Q ss_pred CCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcCCHHHHHHHHHhcc-cc--------ccCC-CCCcccCCC
Q 013632 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWR-HL--------APTA-PNTLGCYPF 369 (439)
Q Consensus 300 ~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~~~l~~~~~~L~~r-Hl--------aPt~-Pdtl~~~P~ 369 (439)
.+|...-.-+| +.+.++|.+|++..+..+.............+.++..|... .- .|.+ +....|=|.
T Consensus 108 --~rf~~~Fg~~~-~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~ 184 (257)
T cd08163 108 --QRFEKYFGPTS-RVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPL 184 (257)
T ss_pred --HHHHHHhCCCc-eEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCc
Confidence 11111111234 68899999999887765543221111122345455544321 11 2332 222566554
Q ss_pred CCCCCe-----------eec----------CCCcEEEeCCcCccceEEEec---CCCCcEEEEecCCCCC
Q 013632 370 TDRDPF-----------LVE----------SCPHVYFAGNQQKFETRLLKG---SDRQLVRLVCIPKFSE 415 (439)
Q Consensus 370 ~~~Dpf-----------vi~----------~~P~V~~~Gn~~~f~~~~~~~---~~~~~~~lv~vP~F~~ 415 (439)
-+.++. +|. --|.+.|+||-|.+.....+- +....++=++|+|||=
T Consensus 185 re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~h~~~~~~~~~~~~E~tv~S~s~ 254 (257)
T cd08163 185 RESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVVHEYQFNGKSGSTREITVKSISM 254 (257)
T ss_pred cccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeEcccccCCCCCCceEEEeccccc
Confidence 444421 332 259999999999887665541 1234688899999974
No 28
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.82 E-value=3.9e-05 Score=80.04 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=66.5
Q ss_pred EEEEEecCCCCCCCCC---hhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 182 YVVLVSGLNVGSGTSN---PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~---~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
+++++||+|+|..... ....+.+++||...+ ...+++.|||+||+++.... .....
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i-------~~~~~D~viIaGDifD~~~p--------------~~~a~ 60 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQV-------QEHQVDAIIVAGDIFDTGSP--------------PSYAR 60 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHH-------HhcCCCEEEECCccccCCCC--------------cHHHH
Confidence 6899999999964321 223455666665543 24678999999999986321 01223
Q ss_pred HHHHHHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCc
Q 013632 259 KELDILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPH 314 (439)
Q Consensus 259 ~~ld~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~ 314 (439)
+.++.++..+.. .++|+++|||||..... .....+|.. .+++.++|+.
T Consensus 61 ~~~~~~l~~L~~~~~~v~~I~GNHD~~~~l----~~~~~~l~~----~gi~vl~~~~ 109 (407)
T PRK10966 61 ELYNRFVVNLQQTGCQLVVLAGNHDSVATL----NESRDLLAF----LNTTVIASAS 109 (407)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCCCCChhhh----hhHHHHHHH----CCcEEEeccc
Confidence 445666666644 58999999999976431 112233332 3788888874
No 29
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.81 E-value=0.00022 Score=69.56 Aligned_cols=145 Identities=19% Similarity=0.228 Sum_probs=84.5
Q ss_pred CCeEEEEEecCCCCCCCCC--------h---hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCccc
Q 013632 179 EDKYVVLVSGLNVGSGTSN--------P---LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~--------~---~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~ 247 (439)
.+..++++||+|+|..... . ..++.+++++... ..+++.+|++||.++.... .
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~---------~~~pd~ii~~GDl~~~~~~----~--- 66 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKL---------NPKPKFVVVCGDLVNAMPG----D--- 66 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhc---------CCCCCEEEEeCCcCCCCcc----h---
Confidence 4678999999999964221 1 2356667776542 3478999999999975311 0
Q ss_pred ccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEec
Q 013632 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTS 327 (439)
Q Consensus 248 ~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~s 327 (439)
+ ...++++.+.+++.++...+++..+|||||-.+. |+. . .+ .+|.. .+...-+.+.++|++|++..
T Consensus 67 --~--~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~--~~~--~-~~----~~f~~-~~g~~~y~~~~~~~~~i~ld 132 (262)
T cd07395 67 --E--LRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNT--PTE--E-SI----KDYRD-VFGDDYFSFWVGGVFFIVLN 132 (262)
T ss_pred --h--hHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCC--CCh--h-HH----HHHHH-HhCCcceEEEECCEEEEEec
Confidence 0 1123467777778887778999999999997532 110 0 00 01100 01122356778999998875
Q ss_pred CCChHHHhhccC-cCCHHHHHHHHHhc
Q 013632 328 GQTIDDLQKYSE-ANDQLEFMERTLRW 353 (439)
Q Consensus 328 Gq~i~di~k~~~-~~~~l~~~~~~L~~ 353 (439)
.....+-..+.. ....++.++..|+.
T Consensus 133 s~~~~~~~~~~~~~~~ql~WL~~~L~~ 159 (262)
T cd07395 133 SQLFFDPSEVPELAQAQDVWLEEQLEI 159 (262)
T ss_pred cccccCccccccchHHHHHHHHHHHHH
Confidence 532221111000 12346777777664
No 30
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.74 E-value=0.00023 Score=65.50 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=38.0
Q ss_pred cCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhc---CCCcEEEcCCCCCCCCCC
Q 013632 221 AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIA---AGVPLDIMPGPNDPANFS 287 (439)
Q Consensus 221 ~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~---~~i~V~imPG~~Dp~~~~ 287 (439)
..+++.||+.||++++.... ......+.++.+.+++.... ..+++.++|||||.....
T Consensus 43 ~~~pd~vi~lGDl~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~~~ 103 (171)
T cd07384 43 RLKPDVVLFLGDLFDGGRIA---------DSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGYGE 103 (171)
T ss_pred hcCCCEEEEeccccCCcEeC---------CHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCCCC
Confidence 46789999999999863210 11122334555555555443 268999999999998533
No 31
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.67 E-value=0.00015 Score=63.79 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=52.0
Q ss_pred EEEEecCCCCCCCCChhH-----HHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHh
Q 013632 183 VVLVSGLNVGSGTSNPLQ-----FQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEP 257 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~-----~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
|+.+||+|++........ ++.+++++.. .+++.||++||+++... .+.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~d~vi~~GDl~~~~~----------------~~~ 53 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKA-----------LDPDLVVITGDLTQRGL----------------PEE 53 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhc-----------cCCCEEEECCCCCCCCC----------------HHH
Confidence 578999999976432211 2234555443 45899999999987521 134
Q ss_pred HHHHHHHHHhhcCC-CcEEEcCCCCCC
Q 013632 258 IKELDILLTQIAAG-VPLDIMPGPNDP 283 (439)
Q Consensus 258 ~~~ld~~L~~l~~~-i~V~imPG~~Dp 283 (439)
++.+.+++.++... +++.++|||||.
T Consensus 54 ~~~~~~~~~~l~~~~~~~~~v~GNHD~ 80 (144)
T cd07400 54 FEEAREFLDALPAPLEPVLVVPGNHDV 80 (144)
T ss_pred HHHHHHHHHHccccCCcEEEeCCCCeE
Confidence 66777888888654 699999999997
No 32
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.56 E-value=0.0006 Score=61.73 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=32.7
Q ss_pred cCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhc--CCCcEEEcCCCCCCCC
Q 013632 221 AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIA--AGVPLDIMPGPNDPAN 285 (439)
Q Consensus 221 ~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~--~~i~V~imPG~~Dp~~ 285 (439)
..+++.||+.||+++..... ...+..+.+..+...+. ..+++.++|||||...
T Consensus 36 ~~~pd~vv~~GDl~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 36 LLQPDVVFVLGDLFDEGKWS------------TDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred hcCCCEEEECCCCCCCCccC------------CHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 35789999999999752110 00111123344444333 2579999999999864
No 33
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=97.51 E-value=0.0003 Score=66.09 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=52.6
Q ss_pred EEEEEecCCCCCCCCCh----------hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccch
Q 013632 182 YVVLVSGLNVGSGTSNP----------LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~----------~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~ 251 (439)
+|+++||+|+|...... ..++.+++++. ..+++.+|++||+++....
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~i~~~GD~~~~~~~------------ 57 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAI-----------EEKVDFVLIAGDLFDSNNP------------ 57 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHH-----------hcCCCEEEECCcccCCCCC------------
Confidence 48999999999753211 23444444443 2467899999999976310
Q ss_pred hhhhHhHHHHHHHHHhhc-CCCcEEEcCCCCCCCC
Q 013632 252 SRLFEPIKELDILLTQIA-AGVPLDIMPGPNDPAN 285 (439)
Q Consensus 252 ~~~~~~~~~ld~~L~~l~-~~i~V~imPG~~Dp~~ 285 (439)
....+..+.+++.++. ..++|.++|||||...
T Consensus 58 --~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~ 90 (223)
T cd00840 58 --SPEALELLIEALRRLKEAGIPVFIIAGNHDSPS 90 (223)
T ss_pred --CHHHHHHHHHHHHHHHHCCCCEEEecCCCCCcc
Confidence 0123455566666664 4789999999999874
No 34
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.50 E-value=0.00068 Score=66.83 Aligned_cols=102 Identities=11% Similarity=0.008 Sum_probs=66.0
Q ss_pred EeEEcCCCcEEEEEEeeCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEE
Q 013632 148 HGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHV 227 (439)
Q Consensus 148 ~G~~~~~g~F~V~di~~P~~~~~~~~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~l 227 (439)
.+...+...+.|.+.-.+..+. .. ++-+|+++||+|++... ....++.+++.++. .+++.|
T Consensus 24 ~~~~~e~~~~~v~~~~i~~~~~------~~-~~~rI~~lSDlH~~~~~-~~~~l~~~v~~i~~-----------~~pDlV 84 (271)
T PRK11340 24 YMHYWEPGWFELIRHRLAFFKD------NA-APFKILFLADLHYSRFV-PLSLISDAIALGIE-----------QKPDLI 84 (271)
T ss_pred HHhhhcCceEEEEEEEccCCCC------CC-CCcEEEEEcccCCCCcC-CHHHHHHHHHHHHh-----------cCCCEE
Confidence 3333455678888777653221 11 35789999999997532 23345666666553 468999
Q ss_pred EEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 228 VIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 228 IiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
+++||.++.... ...+.+.++|..+....+|..++||||-.
T Consensus 85 li~GD~~d~~~~----------------~~~~~~~~~L~~L~~~~pv~~V~GNHD~~ 125 (271)
T PRK11340 85 LLGGDYVLFDMP----------------LNFSAFSDVLSPLAECAPTFACFGNHDRP 125 (271)
T ss_pred EEccCcCCCCcc----------------ccHHHHHHHHHHHhhcCCEEEecCCCCcc
Confidence 999999873110 01234555666665557999999999963
No 35
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00017 Score=74.74 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=55.9
Q ss_pred EEEEEecCCCCCCCC-Ch---hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHh
Q 013632 182 YVVLVSGLNVGSGTS-NP---LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEP 257 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~-~~---~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
+|+-+||.|+|+... .. .......+++...+ ...+++.||||||.++.... . ..+
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a-------~~~~vD~vliAGDlFd~~~P---s-----------~~a 60 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIA-------KEEKVDFVLIAGDLFDTNNP---S-----------PRA 60 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHH-------HHccCCEEEEccccccCCCC---C-----------HHH
Confidence 588999999994322 12 22333334443322 24677999999999987421 1 245
Q ss_pred HHHHHHHHHhhcC-CCcEEEcCCCCCCCC
Q 013632 258 IKELDILLTQIAA-GVPLDIMPGPNDPAN 285 (439)
Q Consensus 258 ~~~ld~~L~~l~~-~i~V~imPG~~Dp~~ 285 (439)
...+-++|..+.. .|+|++++||||+..
T Consensus 61 ~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 61 LKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred HHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 6667777777754 799999999999994
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=97.41 E-value=0.0032 Score=55.06 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|..-. .+ ...+++.+|++||+.+... ...++.+
T Consensus 1 ~i~~isD~H~~~~------------~~-----------~~~~~D~vi~~GD~~~~~~----------------~~~~~~~ 41 (135)
T cd07379 1 RFVCISDTHSRHR------------TI-----------SIPDGDVLIHAGDLTERGT----------------LEELQKF 41 (135)
T ss_pred CEEEEeCCCCCCC------------cC-----------cCCCCCEEEECCCCCCCCC----------------HHHHHHH
Confidence 3789999996432 01 1246799999999886421 1224555
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
.+++.++.. ..+.++|||||..
T Consensus 42 ~~~l~~~~~-~~~~~v~GNHD~~ 63 (135)
T cd07379 42 LDWLKSLPH-PHKIVIAGNHDLT 63 (135)
T ss_pred HHHHHhCCC-CeEEEEECCCCCc
Confidence 566776643 2367899999954
No 37
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.37 E-value=0.00028 Score=64.64 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=49.6
Q ss_pred EEEecCCCCCCCC------------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccch
Q 013632 184 VLVSGLNVGSGTS------------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251 (439)
Q Consensus 184 ~~vSgl~lgs~~~------------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~ 251 (439)
+++||+|+|.... ....++.+.+++.- .++++||++||+++......
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~-----------~~~d~lii~GDl~~~~~~~~---------- 59 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEE-----------YGPERLIILGDLKHSFGGLS---------- 59 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHh-----------cCCCEEEEeCcccccccccC----------
Confidence 4789999996321 01356677777653 56799999999997522100
Q ss_pred hhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 252 SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 252 ~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
......++ ++......++|.+++||||..
T Consensus 60 ---~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 60 ---RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred ---HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 11223333 444455678999999999986
No 38
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.36 E-value=0.0006 Score=64.98 Aligned_cols=222 Identities=17% Similarity=0.183 Sum_probs=106.0
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCC--CC-CC-cccccchhhh-
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGL--LN-GQ-NLASKDQSRL- 254 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~--~~-~~-~~~~~~~~~~- 254 (439)
..||+-+|+++= ....+++|.+-+.- .+++.||++||.+...... |. -+ +....+-..+
T Consensus 5 ~~kilA~s~~~g-----~~e~l~~l~~~~~e-----------~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~ 68 (255)
T PF14582_consen 5 VRKILAISNFRG-----DFELLERLVEVIPE-----------KGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEIN 68 (255)
T ss_dssp --EEEEEE--TT------HHHHHHHHHHHHH-----------HT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHH
T ss_pred chhheeecCcch-----HHHHHHHHHhhccc-----------cCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhh
Confidence 578999998874 24577777777652 4689999999998653110 00 00 0000011111
Q ss_pred ---hHhHHHHHHHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccc-cccCCCCCcCCCceeecCCcEEEeCC-EEEEEecC
Q 013632 255 ---FEPIKELDILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLN-RCLFPGSATYNTFRSCTNPHCFELDN-VRFLGTSG 328 (439)
Q Consensus 255 ---~~~~~~ld~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~-~~lf~~~~~~~~~~~~tNP~~~~i~g-~~~l~~sG 328 (439)
-.+.+.+|+|+..|.. ++++.++|||+|+-....=+++.. ..++|+. +.+ -=+.+.++| ..|+|.-|
T Consensus 69 ~e~~~~~e~~~~ff~~L~~~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~------~~v-H~sf~~~~g~y~v~G~GG 141 (255)
T PF14582_consen 69 EEECYDSEALDKFFRILGELGVPVFVVPGNMDAPERFFLREAYNAEIVTPHI------HNV-HESFFFWKGEYLVAGMGG 141 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTE------EE--CTCEEEETTTEEEEEE-S
T ss_pred hhhhhhHHHHHHHHHHHHhcCCcEEEecCCCCchHHHHHHHHhccceeccce------eee-eeeecccCCcEEEEecCc
Confidence 1345667777766644 789999999999964322223333 3334432 211 123456665 77778776
Q ss_pred CChHHHhhccC-c-CCHHHHHHHHHhccccccCCCCCccc--CCCCCCC----------CeeecCCCcEEEeCCcCcc-c
Q 013632 329 QTIDDLQKYSE-A-NDQLEFMERTLRWRHLAPTAPNTLGC--YPFTDRD----------PFLVESCPHVYFAGNQQKF-E 393 (439)
Q Consensus 329 q~i~di~k~~~-~-~~~l~~~~~~L~~rHlaPt~Pdtl~~--~P~~~~D----------pfvi~~~P~V~~~Gn~~~f-~ 393 (439)
...++=...-. . -...++--.+=.|+++.|- +-.+-+ -|-...+ -||-+.-|+|.+|||.++- +
T Consensus 142 eI~~~~~~~~~~LrYP~weaey~lk~l~elk~~-r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~Ghihe~~~ 220 (255)
T PF14582_consen 142 EITDDQREEEFKLRYPAWEAEYSLKFLRELKDY-RKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLCGHIHESHG 220 (255)
T ss_dssp EEESSS-BCSSS-EEEHHHHHHHHGGGGGCTSS-EEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE-SSS-EE-
T ss_pred cccCCCccccccccchHHHHHHHHHHHHhcccc-cEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEecccccchh
Confidence 55443221100 0 0012222223334444321 111101 0101233 2555668999999999844 3
Q ss_pred eEEEecCCCCcEEEEecCCCCCCCeEEEEECCCCCEEE
Q 013632 394 TRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHT 431 (439)
Q Consensus 394 ~~~~~~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~ 431 (439)
...+ ..+.+|+..+|++ |.-.+|||+.-+++.
T Consensus 221 ~e~l-----G~TlVVNPGsL~~-G~yAvI~l~~~~v~~ 252 (255)
T PF14582_consen 221 KESL-----GKTLVVNPGSLAE-GDYAVIDLEQDKVEF 252 (255)
T ss_dssp -EEE-----TTEEEEE--BGGG-TEEEEEETTTTEEEE
T ss_pred hHHh-----CCEEEecCccccc-CceeEEEeccccccc
Confidence 3333 3678999999999 889999998866654
No 39
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.36 E-value=0.00083 Score=63.45 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=71.5
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
-+|+++||+|++.... ...++.+++.+.. .+++.++++||.++.... ..+.
T Consensus 2 ~~i~~~sDlH~~~~~~-~~~~~~~~~~~~~-----------~~~d~vl~~GD~~~~~~~-----------------~~~~ 52 (223)
T cd07385 2 LRIAHLSDLHLGPFVS-RERLERLVEKINA-----------LKPDLVVLTGDLVDGSVD-----------------VLEL 52 (223)
T ss_pred CEEEEEeecCCCccCC-HHHHHHHHHHHhc-----------cCCCEEEEcCcccCCcch-----------------hhHH
Confidence 4799999999987532 3467777777753 357899999999976310 0145
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcE-EEeCCEEEEEe
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHC-FELDNVRFLGT 326 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~-~~i~g~~~l~~ 326 (439)
+.++++++...+++..+|||||........ . ...+.. .++....|.+. +..++..+.++
T Consensus 53 ~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~--~-~~~l~~----~~v~~L~~~~~~~~~~~~~i~i~ 112 (223)
T cd07385 53 LLELLKKLKAPLGVYAVLGNHDYYSGDEEN--W-IEALES----AGITVLRNESVEISVGGATIGIA 112 (223)
T ss_pred HHHHHhccCCCCCEEEECCCcccccCchHH--H-HHHHHH----cCCEEeecCcEEeccCCeEEEEE
Confidence 566777777778999999999986432111 0 112221 25677777664 55566665544
No 40
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.32 E-value=0.0012 Score=60.30 Aligned_cols=103 Identities=13% Similarity=0.017 Sum_probs=64.9
Q ss_pred EEEecCCCCCCCCC----------hhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhh
Q 013632 184 VLVSGLNVGSGTSN----------PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253 (439)
Q Consensus 184 ~~vSgl~lgs~~~~----------~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~ 253 (439)
.|+||+|+|..... ....+.+++.+...+ .+++.||++||+++....
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~d~vi~~GDl~~~~~~-------------- 58 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETV---------GPDDTVYHLGDFSFGGKA-------------- 58 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhc---------CCCCEEEEeCCCCCCCCh--------------
Confidence 58999999975211 123455666666542 356999999999865210
Q ss_pred hhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCC-CCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecC
Q 013632 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFS-LPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSG 328 (439)
Q Consensus 254 ~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~-lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sG 328 (439)
... -++|.++. .++.+++||||..... +.+ . ...+........+.++|.+|+.+|+
T Consensus 59 --~~~---~~~l~~~~--~~~~~v~GNHD~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~i~l~H~ 115 (168)
T cd07390 59 --GTE---LELLSRLN--GRKHLIKGNHDSSLERKLLA--------F----LLKFESVLQAVRLKIGGRRVYLSHY 115 (168)
T ss_pred --HHH---HHHHHhCC--CCeEEEeCCCCchhhhcccc--------c----ccccceeeeEEEEEECCEEEEEEeC
Confidence 001 33445553 4899999999976321 111 0 0123345666889999999999995
No 41
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.27 E-value=0.00081 Score=60.86 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=41.8
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
++++||+|++..... . ++... ....+++.||++||..+.... .+...
T Consensus 1 ~~~iSDlH~~~~~~~--~------~~~~~-------~~~~~~d~li~~GDi~~~~~~---------------~~~~~--- 47 (166)
T cd07404 1 IQYLSDLHLEFEDNL--A------DLLNF-------PIAPDADILVLAGDIGYLTDA---------------PRFAP--- 47 (166)
T ss_pred CceEccccccCcccc--c------ccccc-------CCCCCCCEEEECCCCCCCcch---------------HHHHH---
Confidence 578999999764321 1 11100 123578999999999865210 00111
Q ss_pred HHHHhhcCCCcEEEcCCCCCCC
Q 013632 263 ILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 263 ~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
++.......+|.++|||||..
T Consensus 48 -~~~~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 48 -LLLALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred -HHHhhcCCccEEEeCCCcceE
Confidence 333444567999999999996
No 42
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.24 E-value=0.0013 Score=61.57 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=53.8
Q ss_pred CeEEEEEecCCCCCCCC-------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchh
Q 013632 180 DKYVVLVSGLNVGSGTS-------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS 252 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~-------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~ 252 (439)
+.+|+.+||+|++.... ....++.|.+++.. .+++.+|++||.++.... .
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~d~vv~~GDl~~~~~~-----------~- 58 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDA-----------EKPDLVVLTGDLITGENT-----------N- 58 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhh-----------cCCCEEEECCccccCCCC-----------c-
Confidence 35799999999987632 12345555555542 467999999999875210 0
Q ss_pred hhhHhHHHHHHHHHhhcC-CCcEEEcCCCCCC
Q 013632 253 RLFEPIKELDILLTQIAA-GVPLDIMPGPNDP 283 (439)
Q Consensus 253 ~~~~~~~~ld~~L~~l~~-~i~V~imPG~~Dp 283 (439)
.+..+.+..+++.+.. .+++.++|||||.
T Consensus 59 --~~~~~~~~~~~~~l~~~~~p~~~~~GNHD~ 88 (199)
T cd07383 59 --DNSTSALDKAVSPMIDRKIPWAATFGNHDG 88 (199)
T ss_pred --hHHHHHHHHHHHHHHHcCCCEEEECccCCC
Confidence 0235666666666543 6899999999993
No 43
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.19 E-value=0.0015 Score=63.63 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=59.1
Q ss_pred EEEEEecCCCCC-CCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 182 YVVLVSGLNVGS-GTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 182 ~i~~vSgl~lgs-~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
+|+-+||+|++. .......++.+++++. ..+++.||++||..... ....++.
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~-----------~~~~D~~v~tGDl~~~~----------------~~~~~~~ 54 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIE-----------QLKPDLLVVTGDLTNDG----------------EPEEYRR 54 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHh-----------cCCCCEEEEccCcCCCC----------------CHHHHHH
Confidence 689999999994 4455667778888876 25679999999987541 1245778
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCC
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~~ 285 (439)
+.++|..+....++.++|||||...
T Consensus 55 ~~~~l~~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 55 LKELLARLELPAPVIVVPGNHDARV 79 (301)
T ss_pred HHHHHhhccCCCceEeeCCCCcCCc
Confidence 8888886656779999999999874
No 44
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.19 E-value=0.0012 Score=63.59 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=48.8
Q ss_pred EEEEEecCCCCCCCCC-hhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 182 YVVLVSGLNVGSGTSN-PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~-~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
+|+++||+|++...+. ...++.+++++.- .+++.||++||.++... +....
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~-----------~~~d~vv~~GDl~~~~~-----------------~~~~~ 52 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKK-----------QKIDHLHIAGDISNDFQ-----------------RSLPF 52 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHh-----------cCCCEEEECCccccchh-----------------hHHHH
Confidence 4899999999754433 2357778887763 34899999999986410 12223
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
++.+.+ + ..++|.++|||||..
T Consensus 53 ~~~l~~-~-~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 53 IEKLQE-L-KGIKVTFNAGNHDML 74 (239)
T ss_pred HHHHHH-h-cCCcEEEECCCCCCC
Confidence 333322 2 357999999999974
No 45
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=97.16 E-value=0.0087 Score=59.07 Aligned_cols=144 Identities=14% Similarity=0.100 Sum_probs=80.1
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
.+.++++++|.+.+.... +..+++|... ..+++.+|+.||.+..... . . .+..
T Consensus 3 ~~~~f~v~gD~~~~~~~~-----~~~~~~l~~~---------~~~~d~vl~~GDl~~~~~~-~--------~----~~~~ 55 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNS-----TNTLDHLEKE---------LGNYDAILHVGDLAYADGY-N--------N----GSRW 55 (294)
T ss_pred CcEEEEEEEECCCCCCCc-----HHHHHHHHhc---------cCCccEEEEcCchhhhcCC-c--------c----chhH
Confidence 467899999999863321 2344555431 3578999999999854210 0 0 0123
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCc---cccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHh
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDPANFSLPQQP---LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQ 335 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqp---l~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~ 335 (439)
+.+-+.++.+.+.+++.++|||||-....-..-. +.+..++... .-..-..-|.|.+++++|++........
T Consensus 56 ~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ysf~~g~v~fi~Lds~~~~~-- 130 (294)
T cd00839 56 DTFMRQIEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSP---SGSTSNLWYSFDVGPVHFVSLSTEVDFY-- 130 (294)
T ss_pred HHHHHHHHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCC---CCCCCCceEEEeeCCEEEEEEecccccc--
Confidence 3444455556667899999999998643211110 0000011100 0001122367889999999887654322
Q ss_pred hccCcCCHHHHHHHHHhcc
Q 013632 336 KYSEANDQLEFMERTLRWR 354 (439)
Q Consensus 336 k~~~~~~~l~~~~~~L~~r 354 (439)
........++.++..|...
T Consensus 131 ~~~~~~~q~~WL~~~L~~~ 149 (294)
T cd00839 131 GDGPGSPQYDWLEADLAKV 149 (294)
T ss_pred cCCCCcHHHHHHHHHHHHh
Confidence 1112345678888888753
No 46
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.11 E-value=0.048 Score=50.35 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=101.0
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||-|.... ..++..++.. .++++.+|.|||++.... +..+
T Consensus 3 ~ilviSDtH~~~~-----~~~~~~~~~~-----------~~~~d~vih~GD~~~~~~-------------------~~~l 47 (172)
T COG0622 3 KILVISDTHGPLR-----AIEKALKIFN-----------LEKVDAVIHAGDSTSPFT-------------------LDAL 47 (172)
T ss_pred EEEEEeccCCChh-----hhhHHHHHhh-----------hcCCCEEEECCCcCCccc-------------------hHHh
Confidence 6899999999553 1223333332 367899999999986410 1111
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN 341 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~ 341 (439)
... + ..+++.+=||.|--..- ...+....++++|++|+.+||-... .+.
T Consensus 48 ~~~---~--~~~i~~V~GN~D~~~~~--------------------~~~p~~~~~~~~g~ki~l~HGh~~~--~~~---- 96 (172)
T COG0622 48 EGG---L--AAKLIAVRGNCDGEVDQ--------------------EELPEELVLEVGGVKIFLTHGHLYF--VKT---- 96 (172)
T ss_pred hcc---c--ccceEEEEccCCCcccc--------------------ccCChhHeEEECCEEEEEECCCccc--ccc----
Confidence 110 2 33899999999986421 1244456789999999999995443 111
Q ss_pred CHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEe-----cCCCCCC
Q 013632 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVC-----IPKFSET 416 (439)
Q Consensus 342 ~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~-----vP~F~~t 416 (439)
....++.+.+. ..-||++-||.|+....... ++.+++ .|..+..
T Consensus 97 -~~~~l~~la~~-------------------------~~~Dvli~GHTH~p~~~~~~-----~i~~vNPGS~s~pr~~~~ 145 (172)
T COG0622 97 -DLSLLEYLAKE-------------------------LGADVLIFGHTHKPVAEKVG-----GILLVNPGSVSGPRGGNP 145 (172)
T ss_pred -CHHHHHHHHHh-------------------------cCCCEEEECCCCcccEEEEC-----CEEEEcCCCcCCCCCCCC
Confidence 11112222211 12789999999988877663 355554 4555656
Q ss_pred CeEEEEECCCCCEEEEEeee
Q 013632 417 GVAVVVNLKNLECHTLSFGT 436 (439)
Q Consensus 417 ~~~vlvnl~tl~~~~v~f~~ 436 (439)
.+.+++|..+.+.+...+..
T Consensus 146 ~sy~il~~~~~~~~~~~~~~ 165 (172)
T COG0622 146 ASYAILDVDNLEVEVLFLER 165 (172)
T ss_pred cEEEEEEcCCCEEEEEEeec
Confidence 68999999999988877643
No 47
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=97.08 E-value=0.0023 Score=66.74 Aligned_cols=47 Identities=11% Similarity=0.235 Sum_probs=32.6
Q ss_pred CeEEEEEecCCCCCCCCC-------hhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcC
Q 013632 180 DKYVVLVSGLNVGSGTSN-------PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP 237 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~-------~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~ 237 (439)
.-+|+.+||+|+|..... ...++.+++... ..+++.|+|+||.++.+
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~-----------~~~vD~VLiaGDLFd~~ 56 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAK-----------EQDVDMILLGGDLFHEN 56 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHH-----------HcCCCEEEECCccCCCC
Confidence 467999999999953221 123444444443 35689999999999874
No 48
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.03 E-value=0.0022 Score=62.91 Aligned_cols=113 Identities=18% Similarity=0.225 Sum_probs=70.2
Q ss_pred EEEEEecCCCCCCCC--------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhh
Q 013632 182 YVVLVSGLNVGSGTS--------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~--------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~ 253 (439)
+++.+||+|++.... ....++..+++++- .+++.||++||.++.... .
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~-----------~~~d~vv~~GDlv~~~~~-------------~ 57 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNR-----------ESLDFVVQLGDIIDGDNA-------------R 57 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHc-----------CCCCEEEECCCeecCCCc-------------h
Confidence 689999999986431 13456777777763 348999999999865210 0
Q ss_pred hhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCC-cEEEeCCEEEEEecCCCh
Q 013632 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNP-HCFELDNVRFLGTSGQTI 331 (439)
Q Consensus 254 ~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP-~~~~i~g~~~l~~sGq~i 331 (439)
..+.++.+.+.+..+ .+++.++|||||--... ..-+. +.. ......| +.|..+|.+|++..+...
T Consensus 58 ~~~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~--~~~~~---~~~------~~~~~~~yysf~~~~~~~i~lds~~~ 123 (267)
T cd07396 58 AEEALDAVLAILDRL--KGPVHHVLGNHDLYNPS--REYLL---LYT------LLGLGAPYYSFSPGGIRFIVLDGYDI 123 (267)
T ss_pred HHHHHHHHHHHHHhc--CCCEEEecCcccccccc--Hhhhh---ccc------ccCCCCceEEEecCCcEEEEEeCCcc
Confidence 123456666666666 47999999999986432 10010 000 0011222 457778888888877543
No 49
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=96.96 E-value=0.0024 Score=54.98 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=47.3
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|++...... ....+.+... ..+++.+|++||+++.... .. .....+
T Consensus 2 ri~~isD~H~~~~~~~~-~~~~~~~~~~-----------~~~~d~ii~~GD~~~~~~~------------~~--~~~~~~ 55 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSD-AFRKLDEIAA-----------ENKPDFIIFLGDLVDGGNP------------SE--EWRAQF 55 (200)
T ss_dssp EEEEEEBBTTTHHHHCH-HHHHHHHHHH-----------HTTTSEEEEESTSSSSSSH------------HH--HHHHHH
T ss_pred eEEEEcCCCCCCcchhH-HHHHHHHHhc-----------cCCCCEEEeeccccccccc------------cc--cchhhh
Confidence 68999999998653221 2223323222 4678999999999986310 00 001111
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~ 285 (439)
..+.......+++.++|||||...
T Consensus 56 ~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 56 WFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp HHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred ccchhhhhccccccccccccccce
Confidence 123444567889999999999974
No 50
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.89 E-value=0.0021 Score=61.86 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=50.7
Q ss_pred eEEEEEecCCCCCCCC-Ch-------hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchh
Q 013632 181 KYVVLVSGLNVGSGTS-NP-------LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQS 252 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~-~~-------~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~ 252 (439)
...++|||+|+|.... .. ...+..++-+...+ ...++++||++||+..... ++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li-------~~~~~d~vIi~GDl~h~~~---~~--------- 75 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIA-------DKYGIEALIINGDLKHEFK---KG--------- 75 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHH-------hhcCCCEEEEcCccccccC---Ch---------
Confidence 3488999999996421 11 12222333332211 1246899999999985421 00
Q ss_pred hhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 013632 253 RLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 253 ~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~ 285 (439)
...+.+.++|+++. .++.+++||||+..
T Consensus 76 ---~~~~~~~~~l~~~~--~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 76 ---LEWRFIREFIEVTF--RDLILIRGNHDALI 103 (225)
T ss_pred ---HHHHHHHHHHHhcC--CcEEEECCCCCCcc
Confidence 23566777888764 49999999999753
No 51
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0026 Score=66.56 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=116.2
Q ss_pred chhhHHHHHHHHHHHHHHHHccccCCCCCCCccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCC
Q 013632 33 GQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM 112 (439)
Q Consensus 33 ~~Qy~~iY~~Rl~~lr~~l~~~a~~k~~~~~v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~ 112 (439)
..+|..++++||++|+++|.++...+|. .++.+ +++.|+.+.|+|++..- .. ..
T Consensus 101 vedf~~~f~~R~~kL~~ii~~~~~~~~~-~~~~~--~~~~g~dv~Iig~v~~~-----------r~------------t~ 154 (481)
T COG1311 101 VEDFVPYFRDRYEKLSRIIREREEARYV-SPIKK--DLEGGSDVKIIGEVNDV-----------RE------------TK 154 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCc-chhhc--ccccCCCcEEEEEEccc-----------ee------------ee
Confidence 5899999999999999999999988874 23444 67777779999999743 11 11
Q ss_pred CCCceEEEecCCceEEEeecc-cC----CcccccCeEEEEEeEEcCCCcEEEEEEeeCCCC--CCCC-CC----------
Q 013632 113 HPDDHLVLEDESGRVKLGGAE-LL----PSAYVTGIVVALHGKETSAGEFLVLDVLDAGLA--PQKE-LP---------- 174 (439)
Q Consensus 113 ~~~d~l~LED~sgRV~L~~~~-~~----~~~lvtG~Vvav~G~~~~~g~F~V~di~~P~~~--~~~~-~~---------- 174 (439)
+++-.+.+||.+|.|.+...+ -. ...++.+.|+|+.|.++.+|. +++++.+|++| .+.. ..
T Consensus 155 ~gh~ii~~ed~tG~v~vvl~k~~e~~~~~~dvl~d~vig~~g~~t~~~~-~a~~~~~p~Vpg~~~~~~~~e~v~v~~isD 233 (481)
T COG1311 155 NGHFIISLEDTTGVVTVVLGKDREAGRFVVDVLFDEVIGVSGPVTPRSS-FADRIYLPDVPGLSLNNTGDERVYVALISD 233 (481)
T ss_pred cccEEEEcccccceEEEEeccchhhhhhHHhhcCCccccccCccCCccc-cCCcceeccCccccCCCCCCcceEEEEEee
Confidence 245589999999999887653 11 125789999999999998888 89999999998 1221 10
Q ss_pred ----C--------------CCCCC------eEEEEEe------cCCCCCCCCC-----hhHHHHHHHHHhccCCCccccc
Q 013632 175 ----L--------------NSGED------KYVVLVS------GLNVGSGTSN-----PLQFQLLVDHITGHLGDEKEQG 219 (439)
Q Consensus 175 ----~--------------~~~~~------~~i~~vS------gl~lgs~~~~-----~~~~~~l~d~L~G~~g~~~~~~ 219 (439)
+ ..+.. +|++.+. |+..|..... ...++.|.+||.-
T Consensus 234 ih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~--------- 304 (481)
T COG1311 234 IHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ--------- 304 (481)
T ss_pred eecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh---------
Confidence 0 01122 4444442 2333554332 2358899999875
Q ss_pred ccCCceEEEEeccC
Q 013632 220 IAAEIVHVVIAGNS 233 (439)
Q Consensus 220 ~~~~i~~lIiaGn~ 233 (439)
..+.|+.+|+-||.
T Consensus 305 vp~~I~v~i~PGnh 318 (481)
T COG1311 305 VPEHIKVFIMPGNH 318 (481)
T ss_pred CCCCceEEEecCCC
Confidence 36789999999995
No 52
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=96.71 E-value=0.011 Score=53.81 Aligned_cols=96 Identities=22% Similarity=0.317 Sum_probs=57.0
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
|+++||+|.+- ..++. .++. ..+++.||++||+.+... .+.+..+
T Consensus 1 i~~~sD~H~~~-----~~~~~--~~~~-----------~~~~D~vv~~GDl~~~~~----------------~~~~~~~- 45 (188)
T cd07392 1 ILAISDIHGDV-----EKLEA--IILK-----------AEEADAVIVAGDITNFGG----------------KEAAVEI- 45 (188)
T ss_pred CEEEEecCCCH-----HHHHH--HHhh-----------ccCCCEEEECCCccCcCC----------------HHHHHHH-
Confidence 58999999843 23332 2222 356899999999876421 0123334
Q ss_pred HHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCC
Q 013632 263 ILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQ 329 (439)
Q Consensus 263 ~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq 329 (439)
+.|+++ .+++.++|||||..... .. +.. ......| ..+.+++..|+|..|.
T Consensus 46 ~~l~~~--~~p~~~v~GNHD~~~~~-------~~-~~~-----~~~~~~~-~~~~~~~~~~~g~~~~ 96 (188)
T cd07392 46 NLLLAI--GVPVLAVPGNCDTPEIL-------GL-LTS-----AGLNLHG-KVVEVGGYTFVGIGGS 96 (188)
T ss_pred HHHHhc--CCCEEEEcCCCCCHHHH-------Hh-hhc-----CcEecCC-CEEEECCEEEEEeCCC
Confidence 455554 56899999999975211 01 110 1112222 5667889999998763
No 53
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=96.59 E-value=0.015 Score=46.67 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=42.8
Q ss_pred eEEEecCCceEEEeec--ccC----CcccccCeEEEEEeEEcC-CCcEEEEEEeeCCCC
Q 013632 117 HLVLEDESGRVKLGGA--ELL----PSAYVTGIVVALHGKETS-AGEFLVLDVLDAGLA 168 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~--~~~----~~~lvtG~Vvav~G~~~~-~g~F~V~di~~P~~~ 168 (439)
.+.|||.+|++.+..- .+. ...+..|.+|.|.|.... ++.+.|++|++|+.+
T Consensus 20 ~~~leD~~G~~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~~~~l~~~~I~~~~~~ 78 (79)
T cd04490 20 IVELEDTTGRITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKDGGLIFADEIFRPDVP 78 (79)
T ss_pred EEEEECCCCEEEEEEeCchhhhhhhhhhccCCCEEEEEEEEecCCCEEEEEEeEcCCCC
Confidence 8999999999999742 233 468999999999999963 236999999999975
No 54
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.53 E-value=0.0088 Score=57.53 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=61.1
Q ss_pred EEEEecCCCCCC------CCC---hhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhh
Q 013632 183 VVLVSGLNVGSG------TSN---PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253 (439)
Q Consensus 183 i~~vSgl~lgs~------~~~---~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~ 253 (439)
|.++||||+++. .+. ...++.+.+-++..+ .+++.||++||+.+.. .
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~---------~~~D~viiaGDl~~~~------------~--- 56 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVV---------APEDIVLIPGDISWAM------------K--- 56 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcC---------CCCCEEEEcCCCccCC------------C---
Confidence 467999999962 233 345555666555532 4789999999987431 0
Q ss_pred hhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecC
Q 013632 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSG 328 (439)
Q Consensus 254 ~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sG 328 (439)
..+..+.++ +|..++ .++.++|||||..... .+-+- ..++.. .+...-| ..+.++++.|+|+.+
T Consensus 57 ~~~~~~~l~-~l~~l~--~~v~~V~GNHD~~~~~--~~~~~-~~l~~~----~~~~~~n-~~~~~~~i~i~G~~~ 120 (232)
T cd07393 57 LEEAKLDLA-WIDALP--GTKVLLKGNHDYWWGS--ASKLR-KALEES----RLALLFN-NAYIDDDVAICGTRG 120 (232)
T ss_pred hHHHHHHHH-HHHhCC--CCeEEEeCCccccCCC--HHHHH-HHHHhc----CeEEecc-CcEEECCEEEEEEEe
Confidence 011122222 555553 3689999999973211 01111 112211 1222225 445678888888653
No 55
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=96.43 E-value=0.11 Score=49.79 Aligned_cols=204 Identities=15% Similarity=0.136 Sum_probs=112.9
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
.-+++++||||-.- ..++.+.+... ..+++.+|+|||...-..+ ++ ....+
T Consensus 3 ~mkil~vtDlHg~~-----~~~~k~~~~~~-----------~~~~D~lviaGDlt~~~~~--~~-----------~~~~~ 53 (226)
T COG2129 3 KMKILAVTDLHGSE-----DSLKKLLNAAA-----------DIRADLLVIAGDLTYFHFG--PK-----------EVAEE 53 (226)
T ss_pred cceEEEEeccccch-----HHHHHHHHHHh-----------hccCCEEEEecceehhhcC--ch-----------HHHHh
Confidence 45799999999832 34555555432 2367999999998711000 00 01111
Q ss_pred HHHHHHHhhc-CCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhc-
Q 013632 260 ELDILLTQIA-AGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY- 337 (439)
Q Consensus 260 ~ld~~L~~l~-~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~- 337 (439)
.+. +..+. ..++|..+|||.||... . ..+..+ -..+-| -..+++|..|.|.-|-+..-.-.+
T Consensus 54 ~~~--~e~l~~~~~~v~avpGNcD~~~v-------~-~~l~~~-----~~~v~~-~v~~i~~~~~~G~Ggsn~tp~nt~~ 117 (226)
T COG2129 54 LNK--LEALKELGIPVLAVPGNCDPPEV-------I-DVLKNA-----GVNVHG-RVVEIGGYGFVGFGGSNPTPFNTPR 117 (226)
T ss_pred hhH--HHHHHhcCCeEEEEcCCCChHHH-------H-HHHHhc-----cccccc-ceEEecCcEEEEecccCCCCCCCcc
Confidence 111 33333 47899999999998531 1 112222 112223 778899999888665543322111
Q ss_pred -cCcCCHHHHHHHHHhcc-c-------cccCCCCCcccCCCCCCCC--------eeecCCCcEEEeCCcCccceEEEecC
Q 013632 338 -SEANDQLEFMERTLRWR-H-------LAPTAPNTLGCYPFTDRDP--------FLVESCPHVYFAGNQQKFETRLLKGS 400 (439)
Q Consensus 338 -~~~~~~l~~~~~~L~~r-H-------laPt~Pdtl~~~P~~~~Dp--------fvi~~~P~V~~~Gn~~~f~~~~~~~~ 400 (439)
.+.+.-...++.+++.- + -||-++..+.. |. .-++ ++-+.-|-+-.+||.|+.....-
T Consensus 118 e~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP~gt~~d~-~~-g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~--- 192 (226)
T COG2129 118 EFSEDEIYSKLKSLVKKADNPVNILLTHAPPYGTLLDT-PS-GYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDK--- 192 (226)
T ss_pred ccCHHHHHHHHHHHHhcccCcceEEEecCCCCCccccC-CC-CccccchHHHHHHHHHhCCceEEEeeecccccccc---
Confidence 11122234455555444 2 25656655552 32 1011 22234789999999997432211
Q ss_pred CCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEee
Q 013632 401 DRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFG 435 (439)
Q Consensus 401 ~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f~ 435 (439)
-..|.+|+..+ ..-+..++++++.=.++.-.|.
T Consensus 193 -iG~TivVNPG~-~~~g~yA~i~l~~~~Vk~~~~~ 225 (226)
T COG2129 193 -IGNTIVVNPGP-LGEGRYALIELEKEVVKLEQFS 225 (226)
T ss_pred -cCCeEEECCCC-ccCceEEEEEecCcEEEEEEec
Confidence 13667787766 4557777888877666655553
No 56
>PLN02533 probable purple acid phosphatase
Probab=96.11 E-value=0.1 Score=55.00 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=77.9
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
...++++++|++..... ..+++.+. ..+++.+|++||.+... ......
T Consensus 138 ~~~~f~v~GDlG~~~~~------~~tl~~i~-----------~~~pD~vl~~GDl~y~~---------------~~~~~w 185 (427)
T PLN02533 138 FPIKFAVSGDLGTSEWT------KSTLEHVS-----------KWDYDVFILPGDLSYAN---------------FYQPLW 185 (427)
T ss_pred CCeEEEEEEeCCCCccc------HHHHHHHH-----------hcCCCEEEEcCcccccc---------------chHHHH
Confidence 46789999998753311 13444543 23578999999987531 011234
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCC-CCCcCCC-c---eeecCC-cEEEeCCEEEEEecCCChH
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFP-GSATYNT-F---RSCTNP-HCFELDNVRFLGTSGQTID 332 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~-~~~~~~~-~---~~~tNP-~~~~i~g~~~l~~sGq~i~ 332 (439)
+.+.++++.+.+.+++...|||||--.. |. .++..|. -..+|.. . ....|- |.|.+++++|++.+...
T Consensus 186 d~f~~~i~~l~s~~P~m~~~GNHE~~~~--~~--~~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~-- 259 (427)
T PLN02533 186 DTFGRLVQPLASQRPWMVTHGNHELEKI--PI--LHPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYT-- 259 (427)
T ss_pred HHHHHHhhhHhhcCceEEeCcccccccc--cc--ccCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCc--
Confidence 5666777778888999999999997532 11 1111111 0111100 0 011232 44888999999886642
Q ss_pred HHhhccCcCCHHHHHHHHHhc
Q 013632 333 DLQKYSEANDQLEFMERTLRW 353 (439)
Q Consensus 333 di~k~~~~~~~l~~~~~~L~~ 353 (439)
.+......++.++..|+.
T Consensus 260 ---~~~~~~~Q~~WLe~dL~~ 277 (427)
T PLN02533 260 ---DFEPGSEQYQWLENNLKK 277 (427)
T ss_pred ---cccCchHHHHHHHHHHHh
Confidence 122234567888888865
No 57
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.08 E-value=0.024 Score=54.73 Aligned_cols=87 Identities=18% Similarity=0.120 Sum_probs=52.5
Q ss_pred CeEEEEEecCCCCCCCCC-----------hh-HHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCccc
Q 013632 180 DKYVVLVSGLNVGSGTSN-----------PL-QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~-----------~~-~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~ 247 (439)
....+.+||+|+|-.... .. ....+...+. ..+++++||.||+-..-....
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~-----------~~~p~~lIilGD~KH~~~~~~------ 81 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIE-----------RYGPKRLIILGDLKHEFGKSL------ 81 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHH-----------hcCCCEEEEcCccccccCccc------
Confidence 456899999999854221 11 1222222433 357899999999874311000
Q ss_pred ccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC-CCCCCCC
Q 013632 248 SKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA-NFSLPQQ 291 (439)
Q Consensus 248 ~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~-~~~lPQq 291 (439)
......+..|+..+... .+++++||||+- ...+|-+
T Consensus 82 -------~~e~~~~~~f~~~~~~~-evi~i~GNHD~~i~~~~~~~ 118 (235)
T COG1407 82 -------RQEKEEVREFLELLDER-EVIIIRGNHDNGIEEILPGF 118 (235)
T ss_pred -------cccHHHHHHHHHHhccC-cEEEEeccCCCccccccccC
Confidence 01234455555555444 799999999998 5566654
No 58
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=95.50 E-value=0.022 Score=53.63 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=40.4
Q ss_pred CCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 013632 222 AEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 222 ~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~ 285 (439)
-+++.+|++||.++.... .+..+..+.++.|..++.. .+.++++.+|||||-..
T Consensus 41 l~PD~Vi~lGDL~D~G~~---------~~~~e~~e~l~Rf~~If~~-~~~~~~~~VpGNHDIG~ 94 (195)
T cd08166 41 VQPDIVIFLGDLMDEGSI---------ANDDEYYSYVQRFINIFEV-PNGTKIIYLPGDNDIGG 94 (195)
T ss_pred cCCCEEEEeccccCCCCC---------CCHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCCcCC
Confidence 478999999999987421 1122345667777777765 66899999999999985
No 59
>PHA02239 putative protein phosphatase
Probab=95.11 E-value=0.086 Score=51.06 Aligned_cols=72 Identities=11% Similarity=0.234 Sum_probs=45.5
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+++++||+| |. ...++.+++.+.-. ....+.||+.||.+|.... ..+.+
T Consensus 2 ~~~~IsDIH-G~----~~~l~~ll~~i~~~---------~~~~d~li~lGD~iDrG~~-----------------s~~v~ 50 (235)
T PHA02239 2 AIYVVPDIH-GE----YQKLLTIMDKINNE---------RKPEETIVFLGDYVDRGKR-----------------SKDVV 50 (235)
T ss_pred eEEEEECCC-CC----HHHHHHHHHHHhhc---------CCCCCEEEEecCcCCCCCC-----------------hHHHH
Confidence 478999999 43 34567777776432 1124789999999985210 12334
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
+.++..+...-.++.++||||..
T Consensus 51 ~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 51 NYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred HHHHHHhhcCCCeEEEECCcHHH
Confidence 44444333344788999999963
No 60
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=94.84 E-value=0.061 Score=44.81 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=41.7
Q ss_pred EEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHH
Q 013632 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263 (439)
Q Consensus 184 ~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 263 (439)
+++||+|.+....... .. .......+++.||++||.++..... .......
T Consensus 1 ~~~gD~h~~~~~~~~~--~~------------~~~~~~~~~~~vi~~GD~~~~~~~~----------------~~~~~~~ 50 (131)
T cd00838 1 AVISDIHGNLEALEAV--LE------------AALAAAEKPDFVLVLGDLVGDGPDP----------------EEVLAAA 50 (131)
T ss_pred CeeecccCCccchHHH--HH------------HHHhcccCCCEEEECCcccCCCCCc----------------hHHHHHH
Confidence 4789999987643111 11 1122357789999999999763210 0011111
Q ss_pred HHHhhcCCCcEEEcCCCCC
Q 013632 264 LLTQIAAGVPLDIMPGPND 282 (439)
Q Consensus 264 ~L~~l~~~i~V~imPG~~D 282 (439)
+.......+++.+++||||
T Consensus 51 ~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 51 LALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred HHHhhcCCCCEEEeCCCce
Confidence 3334456789999999999
No 61
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=94.28 E-value=0.14 Score=50.51 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=56.7
Q ss_pred cCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhc-CCCcEEEcCCCCCCCCCCCCCCccccccCC
Q 013632 221 AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIA-AGVPLDIMPGPNDPANFSLPQQPLNRCLFP 299 (439)
Q Consensus 221 ~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~-~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~ 299 (439)
..+++.||+||||-.. . +..+.......+-+..+..+-++++... ..+++.+++||||..+.. -+ +..
T Consensus 26 ~~~~D~lI~~GDf~~~-~---~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~~~l-~~------l~~ 94 (262)
T cd00844 26 GTKVDLLICCGDFQAV-R---NEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEASNYL-WE------LPY 94 (262)
T ss_pred CCCCcEEEEcCCCCCc-C---CcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCHHHH-Hh------hcC
Confidence 3578999999999432 1 1111000111111122333444444432 356789999999976542 11 111
Q ss_pred CCCcCCCceeecCCcEEEeCCEEEEEecCC
Q 013632 300 GSATYNTFRSCTNPHCFELDNVRFLGTSGQ 329 (439)
Q Consensus 300 ~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq 329 (439)
....-.|+...-+-..++++|++|.+.||.
T Consensus 95 gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~ 124 (262)
T cd00844 95 GGWVAPNIYYLGYAGVVNFGGLRIAGLSGI 124 (262)
T ss_pred CCeecCcEEEecCCCEEEECCeEEEEeccc
Confidence 111124788888889999999999999994
No 62
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=93.75 E-value=0.33 Score=43.98 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=51.7
Q ss_pred eEEEEEecCCCCCCCC---------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccch
Q 013632 181 KYVVLVSGLNVGSGTS---------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~---------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~ 251 (439)
..+-|+||.|+|.++- .+..--.|.+|.+- .+.=+.|-..||+..+-.
T Consensus 4 ~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nnt----------v~p~D~lwhLGDl~~~~n------------- 60 (186)
T COG4186 4 TMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNT----------VGPDDVLWHLGDLSSGAN------------- 60 (186)
T ss_pred eEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhc----------CCccceEEEecccccccc-------------
Confidence 4688999999997532 12234456677654 233478899999986521
Q ss_pred hhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCC
Q 013632 252 SRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANF 286 (439)
Q Consensus 252 ~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~ 286 (439)
.-+++..+++.|.. .++++|||||+...
T Consensus 61 -----~~~~a~~IlerLnG--rkhlv~GNhDk~~~ 88 (186)
T COG4186 61 -----RERAAGLILERLNG--RKHLVPGNHDKCHP 88 (186)
T ss_pred -----hhhHHHHHHHHcCC--cEEEeeCCCCCCcc
Confidence 12455567777755 66999999999863
No 63
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=92.86 E-value=0.31 Score=45.89 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=42.0
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+| |. ...++.+++.+.- ..+.+.+|++||+++.... ..+.+
T Consensus 2 ri~~isDiH-g~----~~~l~~~l~~~~~----------~~~~d~~~~~GD~v~~g~~-----------------~~~~~ 49 (207)
T cd07424 2 RDFVVGDIH-GH----YSLLQKALDAVGF----------DPARDRLISVGDLIDRGPE-----------------SLACL 49 (207)
T ss_pred CEEEEECCC-CC----HHHHHHHHHHcCC----------CCCCCEEEEeCCcccCCCC-----------------HHHHH
Confidence 589999999 33 3466666665421 1246899999999975210 12222
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
+. |.+ ..+..++||||-.
T Consensus 50 ~~-l~~----~~~~~v~GNhe~~ 67 (207)
T cd07424 50 EL-LLE----PWFHAVRGNHEQM 67 (207)
T ss_pred HH-Hhc----CCEEEeECCChHH
Confidence 22 222 3688999999965
No 64
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=92.69 E-value=0.48 Score=47.27 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCCcEEEEEEe--eCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEe
Q 013632 153 SAGEFLVLDVL--DAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIA 230 (439)
Q Consensus 153 ~~g~F~V~di~--~P~~~~~~~~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIia 230 (439)
+.+.|.+..+. .|..++. . ...+|+++||+|...-. +...+|+.... ...++.+++.
T Consensus 22 ~~~~l~~~~~~i~~~~~~~~------~-~~~~iv~lSDlH~~~~~------~~~~~~~~~i~--------~~~~Dlivlt 80 (284)
T COG1408 22 EPGWLRVVKLTILTPKLPAS------L-QGLKIVQLSDLHSLPFR------EEKLALLIAIA--------NELPDLIVLT 80 (284)
T ss_pred ccceEEEEEEEeecCCCCcc------c-CCeEEEEeehhhhchhh------HHHHHHHHHHH--------hcCCCEEEEE
Confidence 34566666544 3433321 1 46679999999996632 44555554431 1223999999
Q ss_pred ccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 013632 231 GNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 231 Gn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~ 285 (439)
||.++... .+....+..+|+.+.+.-.|..+.||||=..
T Consensus 81 GD~~~~~~----------------~~~~~~~~~~L~~L~~~~gv~av~GNHd~~~ 119 (284)
T COG1408 81 GDYVDGDR----------------PPGVAALALFLAKLKAPLGVFAVLGNHDYGV 119 (284)
T ss_pred eeeecCCC----------------CCCHHHHHHHHHhhhccCCEEEEeccccccc
Confidence 99998510 1246778888888888889999999999873
No 65
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=92.04 E-value=1.5 Score=38.05 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=18.4
Q ss_pred CCcEEEeCCcCccceEEEecCCCCcEEEEec
Q 013632 380 CPHVYFAGNQQKFETRLLKGSDRQLVRLVCI 410 (439)
Q Consensus 380 ~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~v 410 (439)
-|+++++||.|...........-.+++++++
T Consensus 91 ~~~~vl~GH~H~~~~~~~~~~~~~~t~~~n~ 121 (129)
T cd07403 91 RPKLFIHGHTHLNYGYQLRIRRVGDTTVINA 121 (129)
T ss_pred CCcEEEEcCcCCCcCccccccccCCEEEEeC
Confidence 3689999999966543310011136677765
No 66
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=90.46 E-value=1.1 Score=37.92 Aligned_cols=65 Identities=12% Similarity=0.241 Sum_probs=47.6
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cCCccccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LLPSAYVT 141 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~~~~lvt 141 (439)
+..++++..+..|.+-|.|.+.. ++|.|.+-|.||+|++..+. +....+-+
T Consensus 25 V~~a~~~~Dd~~V~L~G~Iv~~l---------------------------~~d~Y~F~D~TG~I~VeId~~~w~g~~vt~ 77 (103)
T PF04076_consen 25 VAQAKNAKDDTPVTLEGNIVKQL---------------------------GDDKYLFRDATGEIEVEIDDDVWRGQTVTP 77 (103)
T ss_dssp HHHHTTS-SSEEEEEEEEEEEEE---------------------------ETTEEEEEETTEEEEEE--GGGSTT----T
T ss_pred HHHHhhCcCCCeEEEEEEEEEEe---------------------------cCCEEEEECCCCcEEEEEChhhcCCcccCC
Confidence 45566777899999999999862 47899999999999998763 46677889
Q ss_pred CeEEEEEeEEcCCC
Q 013632 142 GIVVALHGKETSAG 155 (439)
Q Consensus 142 G~Vvav~G~~~~~g 155 (439)
+.-|-+.|.+..+.
T Consensus 78 ~~~Vri~GeVDk~~ 91 (103)
T PF04076_consen 78 DDKVRISGEVDKDW 91 (103)
T ss_dssp TSEEEEEEEEEEET
T ss_pred CCEEEEEEEEeCCC
Confidence 99999999997443
No 67
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=89.21 E-value=2.6 Score=37.05 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=50.7
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeEE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~ 151 (439)
.++.+-|-|+|-+.+ +... +. ...-...|.|...++++.-...-++.|-.|.-|-|.|++
T Consensus 49 ~~~~vrv~G~V~~gS---------v~~~------~~-----~~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~VVv~G~~ 108 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGS---------VEYD------PD-----GNTLTFTITDGGKEIPVVYTGPLPDLFREGQGVVVEGRL 108 (131)
T ss_dssp TTSEEEEEEEEECTT---------EEE-------TT-----SSEEEEEEE-SS-EEEEEEES--CTT--TTSEEEEEEEE
T ss_pred CCceEEEeeEEccCC---------EEEc------CC-----CCEEEEEEEECCcEEEEEECCCCCccccCCCeEEEEEEE
Confidence 578888999887531 1000 00 123378999999999998777678999999999999999
Q ss_pred cCCCcEEEEEEe
Q 013632 152 TSAGEFLVLDVL 163 (439)
Q Consensus 152 ~~~g~F~V~di~ 163 (439)
.++|.|.+++++
T Consensus 109 ~~~g~F~A~~lL 120 (131)
T PF03100_consen 109 GEDGVFEATELL 120 (131)
T ss_dssp CCTSEEEEEEEE
T ss_pred CCCCEEEEEEEE
Confidence 889999999998
No 68
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=89.07 E-value=1.4 Score=43.79 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=43.5
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
.+++|||+|= +...++.+++-+.- ..+.+++|++||.|+... ++.+.+
T Consensus 2 ~~~vIGDIHG-----~~~~l~~ll~~~~~----------~~~~D~li~lGDlVdrGp-----------------~s~~vl 49 (275)
T PRK00166 2 ATYAIGDIQG-----CYDELQRLLEKIDF----------DPAKDTLWLVGDLVNRGP-----------------DSLEVL 49 (275)
T ss_pred cEEEEEccCC-----CHHHHHHHHHhcCC----------CCCCCEEEEeCCccCCCc-----------------CHHHHH
Confidence 3789999992 24566666665421 134689999999998531 123333
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
+ ++.++ ...+..+.||||-.
T Consensus 50 ~-~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 50 R-FVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred H-HHHhc--CCCeEEEecChhHH
Confidence 3 33334 23688999999974
No 69
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=88.93 E-value=1.5 Score=42.70 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=39.9
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|..-. . ...+.++. .+++.++++||+.+.. . .+
T Consensus 2 rIa~isDiHg~~~---~----~~~~~l~~-----------~~pD~Vl~~GDi~~~~--------------------~-~~ 42 (238)
T cd07397 2 RIAIVGDVHGQWD---L----EDIKALHL-----------LQPDLVLFVGDFGNES--------------------V-QL 42 (238)
T ss_pred EEEEEecCCCCch---H----HHHHHHhc-----------cCCCEEEECCCCCcCh--------------------H-HH
Confidence 6899999995321 1 11233332 3579999999987431 1 12
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANF 286 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~ 286 (439)
-+.|.++. .++..++||||-...
T Consensus 43 ~~~l~~l~--~p~~~V~GNHD~~~~ 65 (238)
T cd07397 43 VRAISSLP--LPKAVILGNHDAWYD 65 (238)
T ss_pred HHHHHhCC--CCeEEEcCCCccccc
Confidence 22344442 489999999998753
No 70
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=88.81 E-value=0.67 Score=43.60 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=33.9
Q ss_pred CCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhc----------------CCCcEEEcCCCCCCCC
Q 013632 222 AEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIA----------------AGVPLDIMPGPNDPAN 285 (439)
Q Consensus 222 ~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~----------------~~i~V~imPG~~Dp~~ 285 (439)
-+|+.|++.||.+++.. + . + .+..+-++.|.+.+..-. ..++++++|||||..-
T Consensus 43 l~Pd~V~fLGDLfd~~w-~-~-----D---~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 43 LKPDAVVVLGDLFSSQW-I-D-----D---EEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred cCCCEEEEeccccCCCc-c-c-----H---HHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 45799999999997631 1 1 1 122334455555442111 2489999999999974
No 71
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=88.62 E-value=3.3 Score=36.27 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=53.0
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cCCccccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LLPSAYVT 141 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~~~~lvt 141 (439)
|...++++.+..|.+-|.|.+.. ++|.|.+-|.+|+|.+..+. +....+-+
T Consensus 48 V~~a~~~~Ddt~V~L~G~Iv~~l---------------------------~~d~Y~F~D~TG~I~VeId~~~w~G~~v~p 100 (126)
T TIGR00156 48 VDFAKSMHDGASVTLRGNIISHI---------------------------GDDRYVFRDKSGEINVVIPAAVWNGREVQP 100 (126)
T ss_pred HHHHhhCCCCCEEEEEEEEEEEe---------------------------CCceEEEECCCCCEEEEECHHHcCCCcCCC
Confidence 55566778899999999999862 57889999999999998874 45578889
Q ss_pred CeEEEEEeEEcCC
Q 013632 142 GIVVALHGKETSA 154 (439)
Q Consensus 142 G~Vvav~G~~~~~ 154 (439)
+--|-+.|.+..+
T Consensus 101 ~d~V~I~GeVDk~ 113 (126)
T TIGR00156 101 KDMVNISGSLDKK 113 (126)
T ss_pred CCEEEEEEEECCC
Confidence 9999999999753
No 72
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=88.50 E-value=1.3 Score=43.26 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=32.9
Q ss_pred CCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCC
Q 013632 222 AEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 222 ~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~ 285 (439)
.+++.+|++||.+-.. +.... . .....+.+...++.+...+++..+|||||-..
T Consensus 31 ~~~dfvv~~GD~~y~~-g~~~~------~---~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~ 84 (277)
T cd07378 31 LGPDFILSLGDNFYDD-GVGSV------D---DPRFETTFEDVYSAPSLQVPWYLVLGNHDYSG 84 (277)
T ss_pred cCCCEEEeCCCccccC-CCCCC------c---chHHHHHHHHHccchhhcCCeEEecCCcccCC
Confidence 4689999999987331 11000 0 01112334445555545789999999999874
No 73
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.34 E-value=3.7 Score=42.92 Aligned_cols=86 Identities=9% Similarity=0.101 Sum_probs=51.5
Q ss_pred CCeEEEEEecCCCCCC---CC---------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcc
Q 013632 179 EDKYVVLVSGLNVGSG---TS---------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~---~~---------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~ 246 (439)
+..+|++++|++|=++ .+ ++..|.+..++.+- --+|+.+++.||.+|... ..
T Consensus 47 n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~----------~lkPdvvffLGDLfDeG~------~~ 110 (410)
T KOG3662|consen 47 NSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQW----------RLKPDVVFFLGDLFDEGQ------WA 110 (410)
T ss_pred CceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHh----------ccCCCEEEEeccccccCc------cC
Confidence 6889999999999431 11 12223333333322 357899999999998522 11
Q ss_pred cccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 247 ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 247 ~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
.+.++. +-++.|-.++.. ..+++++.+|||||-.
T Consensus 111 ~~eEf~---~~~~RfkkIf~~-k~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 111 GDEEFK---KRYERFKKIFGR-KGNIKVIYIAGNHDIG 144 (410)
T ss_pred ChHHHH---HHHHHHHHhhCC-CCCCeeEEeCCccccc
Confidence 112222 223333333221 2589999999999998
No 74
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=87.39 E-value=4.7 Score=36.32 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=56.4
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeEE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~ 151 (439)
.++.+-|-|+|-+.+ +.. . -+..-...|.|....|++.-...-+..|-.|.-|-+.|++
T Consensus 50 ~g~~vrvgG~V~~gS---------i~~----------~--~~~~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~ 108 (148)
T PRK13254 50 AGRRFRLGGLVEKGS---------VQR----------G--DGLTVRFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRL 108 (148)
T ss_pred CCCeEEEeEEEecCc---------EEe----------C--CCCEEEEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEE
Confidence 477889999997541 111 0 1123378899999999998887778999999999999999
Q ss_pred cCCCcEEEEEEe
Q 013632 152 TSAGEFLVLDVL 163 (439)
Q Consensus 152 ~~~g~F~V~di~ 163 (439)
.++|.|.+++++
T Consensus 109 ~~~g~F~A~~vL 120 (148)
T PRK13254 109 QDGGVFVADEVL 120 (148)
T ss_pred CCCCeEEEEEEE
Confidence 888899999998
No 75
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=86.48 E-value=2 Score=42.44 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhH--hHHHHHHHHHhhcCCCcEEE
Q 013632 199 LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFE--PIKELDILLTQIAAGVPLDI 276 (439)
Q Consensus 199 ~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~--~~~~ld~~L~~l~~~i~V~i 276 (439)
..++.+++++... ..+++.+|+.||.++.... ....+... ..+.+...+.+..+.++|..
T Consensus 53 ~l~~s~l~~i~~~---------~~~~dfii~tGD~v~h~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~ 114 (296)
T cd00842 53 RLVESALEAIKKN---------HPKPDFILWTGDLVRHDVD---------EQTPETLVLISISNLTSLLKKAFPDTPVYP 114 (296)
T ss_pred HHHHHHHHHHHHh---------CCCCCEEEEcCCCCCCCch---------hhchhHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 4566666666542 2578999999999965211 00011111 24555555666667899999
Q ss_pred cCCCCCCC
Q 013632 277 MPGPNDPA 284 (439)
Q Consensus 277 mPG~~Dp~ 284 (439)
++||||..
T Consensus 115 ~~GNHD~~ 122 (296)
T cd00842 115 ALGNHDSY 122 (296)
T ss_pred cCCCCCCC
Confidence 99999987
No 76
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=84.08 E-value=3.5 Score=38.70 Aligned_cols=115 Identities=10% Similarity=0.060 Sum_probs=58.8
Q ss_pred EEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHH
Q 013632 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264 (439)
Q Consensus 185 ~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 264 (439)
++||+| |. ...++.+++.+.- ...+++|++||.++.... ..+.++.+-.+
T Consensus 2 ~igDiH-g~----~~~l~~~l~~~~~-----------~~~d~li~lGD~vdrg~~--------------~~~~l~~l~~~ 51 (225)
T cd00144 2 VIGDIH-GC----LDDLLRLLEKIGF-----------PPNDKLIFLGDYVDRGPD--------------SVEVIDLLLAL 51 (225)
T ss_pred EEeCCC-CC----HHHHHHHHHHhCC-----------CCCCEEEEECCEeCCCCC--------------cHHHHHHHHHh
Confidence 689999 33 3345554444321 345899999999986311 01222222222
Q ss_pred HHhhcCCCcEEEcCCCCCCCCCCCCCCccccccC-------CC--C-CcCC--CceeecCCcEEEeCCEEEEEecCCChH
Q 013632 265 LTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLF-------PG--S-ATYN--TFRSCTNPHCFELDNVRFLGTSGQTID 332 (439)
Q Consensus 265 L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf-------~~--~-~~~~--~~~~~tNP~~~~i~g~~~l~~sGq~i~ 332 (439)
... ...++++.||||-.....-...-..... .. . ..+. .--+.+-|..+.+++.+++.+||-.-.
T Consensus 52 ~~~---~~~~~~l~GNHe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~ 128 (225)
T cd00144 52 KIL---PDNVILLRGNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSP 128 (225)
T ss_pred cCC---CCcEEEEccCchhhhhhhhcCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCC
Confidence 111 3479999999998632111111111100 00 0 0000 112346788888887677777876543
No 77
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=82.47 E-value=16 Score=30.57 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCc-eEEEeecccCCcccccCeEEEEEeE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESG-RVKLGGAELLPSAYVTGIVVALHGK 150 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sg-RV~L~~~~~~~~~lvtG~Vvav~G~ 150 (439)
.|+.+.+||.+.+. +.+.+.+.+..| .|.+..+ ....+..|-+|-|.|+
T Consensus 14 ~gk~V~ivGkV~~~----------------------------~~~~~~~~~~Dg~~v~v~l~--~~~~~~~~~~vEViG~ 63 (101)
T cd04479 14 VGKTVRIVGKVEKV----------------------------DGDSLTLISSDGVNVTVELN--RPLDLPISGYVEVIGK 63 (101)
T ss_pred CCCEEEEEEEEEEe----------------------------cCCeEEEEcCCCCEEEEEeC--CCCCcccCCEEEEEEE
Confidence 57899999999874 233678888776 8888876 3345667778999999
Q ss_pred EcCCCcEEEEEEe
Q 013632 151 ETSAGEFLVLDVL 163 (439)
Q Consensus 151 ~~~~g~F~V~di~ 163 (439)
+.++....+..++
T Consensus 64 V~~~~~I~~~~~~ 76 (101)
T cd04479 64 VSPDLTIRVLSYI 76 (101)
T ss_pred ECCCCeEEEEEEE
Confidence 9766665555443
No 78
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=81.81 E-value=5.7 Score=34.76 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=49.0
Q ss_pred ccceecccCC-CeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccC
Q 013632 64 ICTVLELEEG-RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTG 142 (439)
Q Consensus 64 v~~l~~~~~~-~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG 142 (439)
..+|.|++++ ..+-++|.|....+.+. +... .....| -.+.|.|+||+|++..=.-....|-.|
T Consensus 4 ~~kI~dL~~g~~~v~~~~~V~~i~~~~~-----~~~k------~~~~~v----~~~~l~D~TG~I~~tlW~~~a~~l~~G 68 (129)
T PRK06461 4 ITKIKDLKPGMERVNVTVRVLEVGEPKV-----IQTK------GGPRTI----SEAVVGDETGRVKLTLWGEQAGSLKEG 68 (129)
T ss_pred ceEHHHcCCCCCceEEEEEEEEcCCceE-----EEeC------CCceEE----EEEEEECCCCEEEEEEeCCccccCCCC
Confidence 4578888887 57889999885321110 0000 000112 158999999999887532134567889
Q ss_pred eEEEEE-eEEcC-CCcEEE
Q 013632 143 IVVALH-GKETS-AGEFLV 159 (439)
Q Consensus 143 ~Vvav~-G~~~~-~g~F~V 159 (439)
.||.|+ |.... +|.+.+
T Consensus 69 dvV~I~na~v~~f~G~lqL 87 (129)
T PRK06461 69 EVVEIENAWTTLYRGKVQL 87 (129)
T ss_pred CEEEEECcEEeeeCCEEEE
Confidence 999999 44332 465333
No 79
>PRK10053 hypothetical protein; Provisional
Probab=81.69 E-value=11 Score=33.20 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=52.3
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cCCccccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LLPSAYVT 141 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~~~~lvt 141 (439)
|...+++..+..|++=|.|.+.. ++|.|.+-|.+|.|.+..+. +....+-+
T Consensus 52 V~~a~~~~Dd~~V~L~G~Iv~~l---------------------------g~d~Y~F~D~tG~I~VeID~~~w~G~~v~p 104 (130)
T PRK10053 52 VEQAKTMHDGATVSLRGNLIDHK---------------------------GDDRYVFRDKSGEINVIIPAAVFDGREVQP 104 (130)
T ss_pred HHHhhcCcCCCeEEEEEEEEEEe---------------------------CCceEEEECCCCcEEEEeCHHHcCCCcCCC
Confidence 44455677889999999999862 57889999999999998873 56678899
Q ss_pred CeEEEEEeEEcCC
Q 013632 142 GIVVALHGKETSA 154 (439)
Q Consensus 142 G~Vvav~G~~~~~ 154 (439)
.--|-+.|.+..+
T Consensus 105 ~~kV~I~GevDk~ 117 (130)
T PRK10053 105 DQMININGSLDKK 117 (130)
T ss_pred CCEEEEEEEECCC
Confidence 9999999999643
No 80
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=80.35 E-value=7.6 Score=36.67 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=30.0
Q ss_pred CCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhh-cCCCcEEEcCCCCCCCC
Q 013632 222 AEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQI-AAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 222 ~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l-~~~i~V~imPG~~Dp~~ 285 (439)
...+.||++||.++... +..+.++.+-++-.+. ....+|++++||||-..
T Consensus 31 ~~~d~lv~lGD~vdrG~--------------~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~~ 81 (208)
T cd07425 31 GGSTHLVQLGDIFDRGP--------------DVIEILWLLYKLEQEAAKAGGKVHFLLGNHELMN 81 (208)
T ss_pred CCCcEEEEECCCcCCCc--------------CHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHHH
Confidence 45789999999998531 0112233332222111 12458999999999763
No 81
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=80.14 E-value=4.8 Score=38.21 Aligned_cols=43 Identities=14% Similarity=0.007 Sum_probs=29.1
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCc
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEI 236 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~ 236 (439)
.-+++++|||+|=. ...|+.+++-+.- ....+++|+.||.||.
T Consensus 15 ~~~ri~vigDIHG~-----~~~L~~lL~~i~~----------~~~~D~li~lGDlvDr 57 (218)
T PRK11439 15 QWRHIWLVGDIHGC-----FEQLMRKLRHCRF----------DPWRDLLISVGDLIDR 57 (218)
T ss_pred CCCeEEEEEcccCC-----HHHHHHHHHhcCC----------CcccCEEEEcCcccCC
Confidence 45689999999962 3345555444421 1246899999999985
No 82
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=79.20 E-value=15 Score=33.51 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=43.5
Q ss_pred eEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEe
Q 013632 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVL 163 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~ 163 (439)
...+.|....|++.-..+-++.|-.|.-|-+.|++.++|.|.+++++
T Consensus 81 ~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~evL 127 (159)
T PRK13150 81 NFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTLEKGNHVLAHEVL 127 (159)
T ss_pred EEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEECCCCEEEEeEEE
Confidence 67889999999998887788999999999999999888999999998
No 83
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=78.49 E-value=11 Score=37.97 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=45.3
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
.+++|||+|= +...|+.+++.+....+.. ......+|+.||.||... + ..+.+
T Consensus 3 ~iyaIGDIHG-----~~d~L~~lL~~I~~d~~~~-----~~~~~~iVfLGDyVDRGP--------------d---S~eVl 55 (304)
T cd07421 3 VVICVGDIHG-----YISKLNNLWLNLQSALGPS-----DFASALVIFLGDYCDRGP--------------E---TRKVI 55 (304)
T ss_pred eEEEEEeccC-----CHHHHHHHHHHhhhhcCcC-----cCCCcEEEEeCCcCCCCC--------------C---HHHHH
Confidence 5888999985 2457777777776443211 123467999999998631 1 12222
Q ss_pred HHHHHhhcC---CCcEEEcCCCCCCC
Q 013632 262 DILLTQIAA---GVPLDIMPGPNDPA 284 (439)
Q Consensus 262 d~~L~~l~~---~i~V~imPG~~Dp~ 284 (439)
+- |.++.. ...++++.||||-.
T Consensus 56 d~-L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 56 DF-LISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred HH-HHHhhhcccccceEEEecCChHH
Confidence 22 222322 23588999999966
No 84
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=77.47 E-value=6.8 Score=37.29 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
..++++++||+|= +...++.+++.+.- ....+++|.+||.++.... +.
T Consensus 13 ~~~ri~visDiHg-----~~~~l~~~l~~~~~----------~~~~d~l~~lGD~vdrG~~-----------------~~ 60 (218)
T PRK09968 13 HYRHIWVVGDIHG-----EYQLLQSRLHQLSF----------CPETDLLISVGDNIDRGPE-----------------SL 60 (218)
T ss_pred CCCeEEEEEeccC-----CHHHHHHHHHhcCC----------CCCCCEEEECCCCcCCCcC-----------------HH
Confidence 4568999999993 24456666555421 1346899999999985211 12
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCC
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDP 283 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp 283 (439)
+.++. |.+ -.++.+.||||-
T Consensus 61 ~~l~~-l~~----~~~~~v~GNHE~ 80 (218)
T PRK09968 61 NVLRL-LNQ----PWFISVKGNHEA 80 (218)
T ss_pred HHHHH-Hhh----CCcEEEECchHH
Confidence 33332 222 157889999996
No 85
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=77.22 E-value=7.7 Score=38.11 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=42.1
Q ss_pred EEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHH
Q 013632 184 VLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDI 263 (439)
Q Consensus 184 ~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~ 263 (439)
.+|||+|= +...|+.+++-+.= ....+++|++||.|+... +..+.++
T Consensus 2 yvIGDIHG-----~~~~L~~LL~~i~~----------~~~~D~Li~lGDlVdRGp-----------------~s~evl~- 48 (257)
T cd07422 2 YAIGDIQG-----CYDELQRLLEKINF----------DPAKDRLWLVGDLVNRGP-----------------DSLETLR- 48 (257)
T ss_pred EEEECCCC-----CHHHHHHHHHhcCC----------CCCCCEEEEecCcCCCCc-----------------CHHHHHH-
Confidence 57888884 34567777666421 124589999999998532 1223333
Q ss_pred HHHhhcCCCcEEEcCCCCCCC
Q 013632 264 LLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 264 ~L~~l~~~i~V~imPG~~Dp~ 284 (439)
+|.++. ..+..+.||||-.
T Consensus 49 ~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 49 FVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred HHHhcC--CCeEEEcCCchHH
Confidence 334443 3788999999975
No 86
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=75.56 E-value=5.4 Score=40.87 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=58.9
Q ss_pred cCCceEEEEeccCCCcCCCCCCCCcccccchhhhh--HhHHHHHHHHHhhcC----CCcEEEcCCCCCCCCCC--CCCCc
Q 013632 221 AAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLF--EPIKELDILLTQIAA----GVPLDIMPGPNDPANFS--LPQQP 292 (439)
Q Consensus 221 ~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~--~~~~~ld~~L~~l~~----~i~V~imPG~~Dp~~~~--lPQqp 292 (439)
..+|+-||+||||=+. . +++ +...++ -.++.+..|.+-... -|..+++-|||.++|.. ||-
T Consensus 28 ~tkVDLLlccGDFQav-R---n~~-----D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsnyL~eLpy-- 96 (456)
T KOG2863|consen 28 NTKVDLLLCCGDFQAV-R---NEQ-----DLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASNYLQELPY-- 96 (456)
T ss_pred CCCccEEEEccchHhh-c---chh-----hcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHHHHHHhccc--
Confidence 4689999999998543 1 122 122222 347888888876644 36789999999999853 222
Q ss_pred cccccCCCCCcCCCceeecCCcEEEeCCEEEEEecC
Q 013632 293 LNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSG 328 (439)
Q Consensus 293 l~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sG 328 (439)
.-..-+|+-...=-..+.++|++|.|.||
T Consensus 97 -------GGwVApNIyYlG~agVv~~~gvRIggiSG 125 (456)
T KOG2863|consen 97 -------GGWVAPNIYYLGYAGVVNFGGVRIGGISG 125 (456)
T ss_pred -------CceeccceEEeeecceEEECCEEEeeccc
Confidence 11111345555555668899999999998
No 87
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=75.47 E-value=23 Score=32.40 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=43.2
Q ss_pred eEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEe
Q 013632 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVL 163 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~ 163 (439)
...+-|....|++.-..+-++.|-.|.-|-+.|++.++|.|.+++++
T Consensus 81 ~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~~vL 127 (160)
T PRK13165 81 SFTLYDAGGSVTVTYEGILPDLFREGQGIVAQGVLEEGNHIEAKEVL 127 (160)
T ss_pred EEEEEcCCeEEEEEEcccCCccccCCCeEEEEEEECCCCeEEEEEEE
Confidence 67889999999998887788999999999999999888999999998
No 88
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=74.67 E-value=9.8 Score=36.43 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=43.6
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCccccc--ccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQG--IAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~--~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
+|+++||+|= +...|+.+++-+.=. .+++. .....+++|+.||.|+.... +.+
T Consensus 2 ~i~vigDIHG-----~~~~L~~ll~~~~~~---~~~~~~~~~~~~d~lv~lGDlIDrG~~-----------------s~e 56 (234)
T cd07423 2 PFDIIGDVHG-----CYDELEELLEKLGYR---IKRVGTVTHPEGRRAVFVGDLVDRGPD-----------------SPE 56 (234)
T ss_pred CeEEEEECCC-----CHHHHHHHHHHcCCc---cccCccccCCCCCEEEEECCccCCCCC-----------------HHH
Confidence 5899999995 345677666665211 00000 01235899999999985311 122
Q ss_pred HHHHHHHhhcCCCcEEEcCCCCCC
Q 013632 260 ELDILLTQIAAGVPLDIMPGPNDP 283 (439)
Q Consensus 260 ~ld~~L~~l~~~i~V~imPG~~Dp 283 (439)
.++ +|.++...-.++.+-||||-
T Consensus 57 vl~-~l~~l~~~~~~~~v~GNHE~ 79 (234)
T cd07423 57 VLR-LVMSMVAAGAALCVPGNHDN 79 (234)
T ss_pred HHH-HHHHHhhCCcEEEEECCcHH
Confidence 333 23333222258899999996
No 89
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=74.55 E-value=22 Score=29.18 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred eEEEecCCceEEEeec---c---------------------cCCcccccCeEEEEEeEEcC-CCc
Q 013632 117 HLVLEDESGRVKLGGA---E---------------------LLPSAYVTGIVVALHGKETS-AGE 156 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~---~---------------------~~~~~lvtG~Vvav~G~~~~-~g~ 156 (439)
.+-|+|.||.|+...= . -....+-.|.+|-|+|+... .|.
T Consensus 17 ~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~frg~ 81 (92)
T cd04483 17 SFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYRGE 81 (92)
T ss_pred EEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEeccCCe
Confidence 7899999999987531 1 12345899999999999874 454
No 90
>PRK08402 replication factor A; Reviewed
Probab=73.09 E-value=12 Score=38.45 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=50.4
Q ss_pred CccceecccCC-CeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCc----eEEEecCCceEEEeec--ccC
Q 013632 63 PICTVLELEEG-RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDD----HLVLEDESGRVKLGGA--ELL 135 (439)
Q Consensus 63 ~v~~l~~~~~~-~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d----~l~LED~sgRV~L~~~--~~~ 135 (439)
+..+|.|+.++ ..+.++|.|......| ++.+ . +++. .+.|.|+||++++..= ...
T Consensus 61 ~~~kI~dl~~g~~~V~v~~rVl~~~~~r-----~f~r------------r-dG~~~~V~~i~l~DeTG~ir~TlW~~~a~ 122 (355)
T PRK08402 61 PLMHISDLVPGMRGVNIVGRVLRKYPPR-----EYTK------------K-DGSTGRVASLIIYDDTGRARVVLWDAKVA 122 (355)
T ss_pred CccCHHHccCCCceeeEEEEEEEccCCc-----eeec------------c-CCCcceEEEEEEEcCCCeEEEEEechhhh
Confidence 46678898876 5788999998753211 1111 0 0111 3899999999998752 111
Q ss_pred --CcccccCeEEEEEeEEcC---CCcEEEE
Q 013632 136 --PSAYVTGIVVALHGKETS---AGEFLVL 160 (439)
Q Consensus 136 --~~~lvtG~Vvav~G~~~~---~g~F~V~ 160 (439)
-..+-.|-||+++|-... +|.+.++
T Consensus 123 ~~~~~l~~Gdvi~I~~a~V~e~~~G~~eLs 152 (355)
T PRK08402 123 KYYNKINVGDVIKVIDAQVRESLSGLPELH 152 (355)
T ss_pred hhcccCCCCCEEEEECCEEeecCCCcEEEE
Confidence 134889999999855443 4554553
No 91
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=72.56 E-value=15 Score=39.03 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=50.1
Q ss_pred ccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeec-c-c--CCcccccCeEE
Q 013632 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA-E-L--LPSAYVTGIVV 145 (439)
Q Consensus 70 ~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~-~-~--~~~~lvtG~Vv 145 (439)
...+..+.|+|+|....+ ..+ + ....+ ..+.|||++|++.+..= . + ....|..|.++
T Consensus 277 ~~~~~~v~vaG~I~~ik~--------~~T----K---kG~~m----af~~leD~tG~ie~vvFp~~y~~~~~~l~~~~~v 337 (449)
T PRK07373 277 QKEKTKVSAVVMLNEVKK--------IVT----K---KGDPM----AFLQLEDLSGQSEAVVFPKSYERISELLQVDARL 337 (449)
T ss_pred ccCCCEEEEEEEEEEeEe--------ccc----C---CCCEE----EEEEEEECCCCEEEEECHHHHHHHHHHhccCCEE
Confidence 345778899999987511 000 0 00011 26789999999999752 2 2 23679999999
Q ss_pred EEEeEEcCC-C--cEEEEEEe
Q 013632 146 ALHGKETSA-G--EFLVLDVL 163 (439)
Q Consensus 146 av~G~~~~~-g--~F~V~di~ 163 (439)
.|+|++... | .+.|+++.
T Consensus 338 ~v~G~v~~~~~~~~liv~~i~ 358 (449)
T PRK07373 338 IIWGKVDRRDDQVQLIVEDAE 358 (449)
T ss_pred EEEEEEEecCCeEEEEEeEee
Confidence 999998733 4 47778775
No 92
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=72.40 E-value=14 Score=35.69 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=41.8
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
++++|+|+| |. ...|+.|++.+.-...+ +......-+++|+.||.||.... ..+.++.+
T Consensus 2 ~~~vIGDIH-G~----~~~L~~lL~~~~~~~~~--~~~~~~~~d~li~lGDliDRGp~--------------S~~vl~~~ 60 (245)
T PRK13625 2 KYDIIGDIH-GC----YQEFQALTEKLGYNWSS--GLPVHPDQRKLAFVGDLTDRGPH--------------SLRMIEIV 60 (245)
T ss_pred ceEEEEECc-cC----HHHHHHHHHHcCCCccc--CcccCCCCCEEEEECcccCCCcC--------------hHHHHHHH
Confidence 478899999 43 34566666654321100 00000122689999999985311 11223322
Q ss_pred HHHHHhhcCCCcEEEcCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDP 283 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp 283 (439)
-++ ...-.++.+-||||-
T Consensus 61 ~~~----~~~~~~~~l~GNHE~ 78 (245)
T PRK13625 61 WEL----VEKKAAYYVPGNHCN 78 (245)
T ss_pred HHH----hhCCCEEEEeCccHH
Confidence 222 233379999999984
No 93
>PRK06386 replication factor A; Reviewed
Probab=72.33 E-value=20 Score=37.04 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=49.6
Q ss_pred CccceecccCCCeEE-EEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCccccc
Q 013632 63 PICTVLELEEGRECV-IIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVT 141 (439)
Q Consensus 63 ~v~~l~~~~~~~~~~-viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvt 141 (439)
+..+|.|+.++...+ |.|.|...-+ + |+..+.. .. -=-..+|.|+||||++..= .. .+-.
T Consensus 106 ~~~KI~DL~~g~~~v~V~akVle~~e--~----e~~~~g~-------~~---~v~sg~lgDeTGrIr~TlW--~~-~l~e 166 (358)
T PRK06386 106 KLVKIRDLSLVTPYVSVIGKITGITK--K----EYDSDGT-------SK---IVYQGYIEDDTARVRISSF--GK-PLED 166 (358)
T ss_pred CccEeEeccCCCCceEEEEEEEEccC--c----eEecCCC-------cc---EEEEEEEEcCCCeEEEEEc--cc-cccC
Confidence 456899998876665 9999975311 1 2211100 00 0127999999999999853 22 4677
Q ss_pred CeEEEEEeEEcC--CCcEEE
Q 013632 142 GIVVALHGKETS--AGEFLV 159 (439)
Q Consensus 142 G~Vvav~G~~~~--~g~F~V 159 (439)
|.++-+.+.+.. +|.+.+
T Consensus 167 Gd~v~i~na~v~e~~G~~el 186 (358)
T PRK06386 167 NRFVRIENARVSQYNGYIEI 186 (358)
T ss_pred CCEEEEeeeEEEccCCeEEE
Confidence 999999988764 355554
No 94
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=70.34 E-value=23 Score=31.91 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=55.4
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeE
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGK 150 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~ 150 (439)
..|++.-+-|+|-+-+=.| + .-+.+-+..++|...+|++.-..+-++.|-.|+.|-+.|.
T Consensus 49 ~~G~rlR~GGlV~~GSv~R---------~-----------~~~~~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~ 108 (153)
T COG2332 49 ETGQRLRLGGLVEAGSVQR---------D-----------PGSLKVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQ 108 (153)
T ss_pred cCCcEEEEeeeEeeceEEe---------c-----------CCCcEEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEE
Confidence 4478888989887642111 0 1112347788899999998876667899999999999999
Q ss_pred EcCCCcEEEEEEe
Q 013632 151 ETSAGEFLVLDVL 163 (439)
Q Consensus 151 ~~~~g~F~V~di~ 163 (439)
+...|.|++++++
T Consensus 109 ~~~~~~f~A~~vL 121 (153)
T COG2332 109 LQGGGVFEAKEVL 121 (153)
T ss_pred ecCCCEEEeeehh
Confidence 9766899999998
No 95
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=69.37 E-value=23 Score=30.87 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=51.5
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cCCcccccC
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LLPSAYVTG 142 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~~~~lvtG 142 (439)
..-+.+..+..+++-|.|.++- ++|.++.-|.||.|+++.+. ++...+-+-
T Consensus 49 ~~Ak~~~Dda~V~l~GnIv~qi---------------------------~~D~y~FrD~sGeI~VeIdd~~w~g~tv~P~ 101 (128)
T COG3111 49 DQAKTLHDDAWVSLEGNIVRQI---------------------------GDDRYVFRDASGEINVDIDDKVWNGQTVTPK 101 (128)
T ss_pred HHhhccccCCeEEEEeeEEEee---------------------------CCceEEEEcCCccEEEEecccccCCcccCcc
Confidence 3444566788999999999861 68999999999999998864 567888999
Q ss_pred eEEEEEeEEcCC
Q 013632 143 IVVALHGKETSA 154 (439)
Q Consensus 143 ~Vvav~G~~~~~ 154 (439)
.-|-+.|.+..+
T Consensus 102 dkV~I~GevDk~ 113 (128)
T COG3111 102 DKVRIQGEVDKD 113 (128)
T ss_pred cEEEEEeEEcCC
Confidence 999999998643
No 96
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.11 E-value=91 Score=28.35 Aligned_cols=123 Identities=22% Similarity=0.364 Sum_probs=76.5
Q ss_pred EEEEecCCCCCCCC-ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 183 VVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 183 i~~vSgl~lgs~~~-~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
++.++|+|+-.... ....+..| | ..-+|.+++..||..+ ++.
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkkl---L-----------vPgki~hilctGNlcs-----------------------~e~ 45 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKL---L-----------VPGKIQHILCTGNLCS-----------------------KES 45 (183)
T ss_pred EEEeccccCCccccccCHHHHhc---c-----------CCCceeEEEEeCCcch-----------------------HHH
Confidence 67789999976543 23344433 3 2467899999999542 334
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCcC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEAN 341 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~~ 341 (439)
-++|.++++ .|-|+-|..|-.. -.|.. ..++++-.+|..+||.-+ .+-.
T Consensus 46 ~dylk~l~~--dvhiVrGeFD~~~-----------~yP~~------------kvvtvGqfkIG~chGhqV------iP~g 94 (183)
T KOG3325|consen 46 YDYLKTLSS--DVHIVRGEFDENL-----------KYPEN------------KVVTVGQFKIGLCHGHQV------IPWG 94 (183)
T ss_pred HHHHHhhCC--CcEEEecccCccc-----------cCCcc------------ceEEeccEEEEeecCcEe------ecCC
Confidence 457888888 5667889988761 12222 235678888999998543 2223
Q ss_pred CHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEec
Q 013632 342 DQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKG 399 (439)
Q Consensus 342 ~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~ 399 (439)
++ +.+..+-++ | + -||+..||.|+|+....+|
T Consensus 95 d~-~sL~~LaRq--l--------------d---------vDILl~G~Th~f~Aye~eg 126 (183)
T KOG3325|consen 95 DP-ESLALLARQ--L--------------D---------VDILLTGHTHKFEAYEHEG 126 (183)
T ss_pred CH-HHHHHHHHh--c--------------C---------CcEEEeCCceeEEEEEeCC
Confidence 33 222222211 0 1 3688999999998766654
No 97
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=68.77 E-value=47 Score=36.33 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=55.0
Q ss_pred HHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCC
Q 013632 200 QFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPG 279 (439)
Q Consensus 200 ~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG 279 (439)
.++.+++||.-. ...|++++..||.+.-.+. ....+.....++.+.+.+.+.-++++|.-.=|
T Consensus 196 lies~L~~ike~---------~~~iD~I~wTGD~~~H~~w--------~~t~~~~l~~~~~l~~~~~e~FpdvpvypalG 258 (577)
T KOG3770|consen 196 LIESALDHIKEN---------HKDIDYIIWTGDNVAHDVW--------AQTEEENLSMLSRLTSLLSEYFPDVPVYPALG 258 (577)
T ss_pred HHHHHHHHHHhc---------CCCCCEEEEeCCCCcccch--------hhhHHHHHHHHHHHHHHHHHhCCCCceeeecc
Confidence 467788887653 2339999999998854211 11233445667888888888888999999999
Q ss_pred CCCCCC-CCCCCCccccc
Q 013632 280 PNDPAN-FSLPQQPLNRC 296 (439)
Q Consensus 280 ~~Dp~~-~~lPQqpl~~~ 296 (439)
|||+.. .++|-.+++..
T Consensus 259 Nhe~~P~N~F~~~~~~~~ 276 (577)
T KOG3770|consen 259 NHEIHPVNLFAPGSVPKR 276 (577)
T ss_pred cCCCCcHhhcCCCCCcch
Confidence 999982 34444444443
No 98
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=63.57 E-value=13 Score=28.13 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=29.8
Q ss_pred eEEEecCCceEEEeecc----cCCcccccCeEEEEEeEEcC
Q 013632 117 HLVLEDESGRVKLGGAE----LLPSAYVTGIVVALHGKETS 153 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~----~~~~~lvtG~Vvav~G~~~~ 153 (439)
.+.|+|++|+|.+..-. .....+-+|.+|.|.|+...
T Consensus 19 ~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~ 59 (75)
T PF01336_consen 19 FFTLEDGTGSIQVVFFNEEYERFREKLKEGDIVRVRGKVKR 59 (75)
T ss_dssp EEEEEETTEEEEEEEETHHHHHHHHTS-TTSEEEEEEEEEE
T ss_pred EEEEEECCccEEEEEccHHhhHHhhcCCCCeEEEEEEEEEE
Confidence 78999999999998643 13477899999999999873
No 99
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=63.37 E-value=42 Score=27.02 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=31.9
Q ss_pred eEEEecCCceEEEeec---c----cCCcccccCeEEEEEeEEcC-CCcEEE
Q 013632 117 HLVLEDESGRVKLGGA---E----LLPSAYVTGIVVALHGKETS-AGEFLV 159 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~---~----~~~~~lvtG~Vvav~G~~~~-~g~F~V 159 (439)
.+.|+|.||+|+...- . .....+-.|.+|.|.|+... +|..++
T Consensus 19 ~~tL~D~TG~I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~g~~ql 69 (95)
T cd04478 19 TYTIDDGTGTIEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQGKKSI 69 (95)
T ss_pred EEEEECCCCcEEEEEeCCCCCcccccccccccCCEEEEEEEEcccCCeeEE
Confidence 7899999999987532 1 13466889999999999975 455443
No 100
>PRK07211 replication factor A; Reviewed
Probab=61.21 E-value=13 Score=39.81 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=49.6
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc-cCCcccccCe
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE-LLPSAYVTGI 143 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~-~~~~~lvtG~ 143 (439)
.+|.++..++.|-|+|.|....+.+. +.+.. .-...-..+.|-|+||||++.+=. .-...+-.|.
T Consensus 270 ~~I~dl~~g~~vdV~GvV~~v~~~rt-----f~r~d---------G~~~~vr~l~l~D~TG~IrvTLWg~~A~~~i~~Gd 335 (485)
T PRK07211 270 TPIESLEIDETVDIAGVVRSADPKRT-----FDRDD---------GSEGQVRNVRIQDDTGDIRVALWGEKADLDIGPGD 335 (485)
T ss_pred ccHhhcCCCCceeEEEEEEEccCcEE-----EEcCC---------CCEeEEEEEEEEcCCCcEEEEEeCccccCCCCCCC
Confidence 56677788888999999987532211 11100 000012369999999999997521 1124688999
Q ss_pred EEEEEeEEcCCC
Q 013632 144 VVALHGKETSAG 155 (439)
Q Consensus 144 Vvav~G~~~~~g 155 (439)
+|+++|....+|
T Consensus 336 vV~Ikg~~V~dg 347 (485)
T PRK07211 336 EVVAADVEIQDG 347 (485)
T ss_pred EEEEEccEEEec
Confidence 999999655544
No 101
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=59.19 E-value=32 Score=27.06 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=28.3
Q ss_pred eEEEecCCceEEEeecccC-CcccccCeEEEEE-eEEc
Q 013632 117 HLVLEDESGRVKLGGAELL-PSAYVTGIVVALH-GKET 152 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~~~-~~~lvtG~Vvav~-G~~~ 152 (439)
.+.|.|+||+|++..=.-. ...+-+|.++.+. |+..
T Consensus 26 ~~~l~D~TG~i~~~~W~~~~~~~~~~G~vv~i~~~~v~ 63 (82)
T cd04491 26 SGLVGDETGTIRFTLWDEKAADDLEPGDVVRIENAYVR 63 (82)
T ss_pred EEEEECCCCEEEEEEECchhcccCCCCCEEEEEeEEEE
Confidence 6899999999999753212 5678899999999 6664
No 102
>PRK07217 replication factor A; Reviewed
Probab=57.96 E-value=50 Score=33.39 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=52.7
Q ss_pred CccceecccC-CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc-cCCcccc
Q 013632 63 PICTVLELEE-GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE-LLPSAYV 140 (439)
Q Consensus 63 ~v~~l~~~~~-~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~-~~~~~lv 140 (439)
+..+|.|+.. ++.+.|.|.|....+ |+ .+.-.+ .=.|+|+||||++..=. -+...+-
T Consensus 71 ~~~kI~Di~~~~~~VsV~aKVl~l~e--~~--------------~~si~q-----vGllgDETG~IkfT~W~~s~~~~le 129 (311)
T PRK07217 71 ELVNIADIDEPEQWVDVTAKVVQLWE--PS--------------SDSIAQ-----VGLLGDETGTIKFTKWAKSDLPELE 129 (311)
T ss_pred CceeeeecCCCCCcEEEEEEEEEecC--CC--------------CCceEE-----EEEEEcCCceEEEEEccCCCCCccc
Confidence 4567999874 778889999996532 11 000011 23799999999998632 2456788
Q ss_pred cCeEEEEEeEEcC--CCcEEEE
Q 013632 141 TGIVVALHGKETS--AGEFLVL 160 (439)
Q Consensus 141 tG~Vvav~G~~~~--~g~F~V~ 160 (439)
.|.++-+.+.+.. +|.+.++
T Consensus 130 eGd~~rI~na~v~ey~G~~~ln 151 (311)
T PRK07217 130 EGKSYLLKNVVTDEYQGRFSVK 151 (311)
T ss_pred CCCEEEEEeEEEeeECCEEEEE
Confidence 9999999998875 5766653
No 103
>PRK12366 replication factor A; Reviewed
Probab=57.74 E-value=26 Score=39.03 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=47.5
Q ss_pred ceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc-cCCcccccCeE
Q 013632 66 TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE-LLPSAYVTGIV 144 (439)
Q Consensus 66 ~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~-~~~~~lvtG~V 144 (439)
+|.++..+..+-|+|+|....+.+. +.+.. .-.+.--.+.|-|+||+|++.+=. .....+-.|-+
T Consensus 177 ~I~el~~g~~v~v~G~V~~~~~~~~-----f~rkd---------g~~~~~r~~~l~D~TG~irvTlW~~~a~~~~~~g~v 242 (637)
T PRK12366 177 DIPELEPNLSATIEGEVTKAYPIKE-----FTRKD---------GSEGKLKSFILKDDTGSIRVTLWNDLTDIEVNKGDI 242 (637)
T ss_pred cccccCCCCeEEEEEEEEEccCcEE-----EEEcC---------CCeeEEEEEEEEcCCCcEEEEEEChhhcccCCCCCE
Confidence 6778888889999999987633221 11100 000012379999999999997521 11235789999
Q ss_pred EEEEeEEc
Q 013632 145 VALHGKET 152 (439)
Q Consensus 145 vav~G~~~ 152 (439)
++++|...
T Consensus 243 v~i~g~~~ 250 (637)
T PRK12366 243 VRVKGYVK 250 (637)
T ss_pred EEEEeEEe
Confidence 99999743
No 104
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=56.83 E-value=36 Score=33.92 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=41.3
Q ss_pred EEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHH
Q 013632 183 VVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELD 262 (439)
Q Consensus 183 i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld 262 (439)
+.+|||+|= +...|+.|++-+.= ....+++++.||.|+... .+.+.++
T Consensus 3 ~YvIGDIHG-----c~daL~~LL~~i~f----------~~~~D~l~~lGDlVdRGP-----------------~slevL~ 50 (279)
T TIGR00668 3 TYLIGDLHG-----CYDELQALLERVEF----------DPGQDTLWLTGDLVARGP-----------------GSLEVLR 50 (279)
T ss_pred EEEEEcccC-----CHHHHHHHHHHhCc----------CCCCCEEEEeCCccCCCC-----------------CHHHHHH
Confidence 467888874 35577777766531 123478999999998531 1223333
Q ss_pred HHHHhhcCCCcEEEcCCCCCC
Q 013632 263 ILLTQIAAGVPLDIMPGPNDP 283 (439)
Q Consensus 263 ~~L~~l~~~i~V~imPG~~Dp 283 (439)
++.++.. .+.++-||||-
T Consensus 51 -~l~~l~~--~~~~VlGNHD~ 68 (279)
T TIGR00668 51 -YVKSLGD--AVRLVLGNHDL 68 (279)
T ss_pred -HHHhcCC--CeEEEEChhHH
Confidence 4444433 46789999995
No 105
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=55.15 E-value=36 Score=40.52 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=52.4
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeec-c-c--CCccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA-E-L--LPSAY 139 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~-~-~--~~~~l 139 (439)
+..|..+..++.+.++|+|....+ ... .....| ..+.|||.+|.+.+..= . + ....|
T Consensus 968 ~~~l~~~~~g~~V~v~G~I~~vk~------------~~T---KkG~~m----afltLeD~TG~iEvviFp~~ye~~~~~L 1028 (1135)
T PRK05673 968 LADLEPTEGGSVVTVAGLVVSVRR------------RVT---KRGNKM----AIVTLEDLSGRIEVMLFSEALEKYRDLL 1028 (1135)
T ss_pred HHHHhccccCceEEEEEEEEEEEe------------ccc---CCCCeE----EEEEEEeCCCcEEEEECHHHHHHHHHHh
Confidence 344444456888999999986521 000 000011 25889999999998752 2 1 23678
Q ss_pred ccCeEEEEEeEEcCC-C--cEEEEEEe
Q 013632 140 VTGIVVALHGKETSA-G--EFLVLDVL 163 (439)
Q Consensus 140 vtG~Vvav~G~~~~~-g--~F~V~di~ 163 (439)
..|.+|.|+|++... | .+.|+++.
T Consensus 1029 ~~g~iV~V~GkVe~~~~~~qlii~~I~ 1055 (1135)
T PRK05673 1029 EEDRIVVVKGQVSFDDGGLRLTAREVM 1055 (1135)
T ss_pred ccCCEEEEEEEEEecCCeEEEEEeecc
Confidence 999999999999733 3 47777775
No 106
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=54.28 E-value=1.5e+02 Score=31.59 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=80.8
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
....+++.-||+........+..+. ...+++.+|.+||+.=.. ... . ..-
T Consensus 146 ~~~~~~i~GDlG~~~~~~s~~~~~~----------------~~~k~d~vlhiGDlsYa~------~~~------n--~~w 195 (452)
T KOG1378|consen 146 SPTRAAIFGDMGCTEPYTSTLRNQE----------------ENLKPDAVLHIGDLSYAM------GYS------N--WQW 195 (452)
T ss_pred CceeEEEEccccccccccchHhHHh----------------cccCCcEEEEecchhhcC------CCC------c--cch
Confidence 4577889899988654422222111 122689999999975321 110 0 345
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCC---CceeecCC--cEEEeCCEEEEEecCCChHH
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYN---TFRSCTNP--HCFELDNVRFLGTSGQTIDD 333 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~---~~~~~tNP--~~~~i~g~~~l~~sGq~i~d 333 (439)
+.+-.+++-+++.+|-.+..|||+--.. |+.+|- +-..|+. +=.-.+|| |.|.++++.|++.+-+.=-
T Consensus 196 D~f~r~vEp~As~vPymv~~GNHE~d~~--~~~~F~----~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~- 268 (452)
T KOG1378|consen 196 DEFGRQVEPIASYVPYMVCSGNHEIDWP--PQPCFV----PYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYY- 268 (452)
T ss_pred HHHHhhhhhhhccCceEEecccccccCC--Cccccc----ccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccc-
Confidence 7777888888999999999999987753 222332 2222221 00123343 3377789999998876654
Q ss_pred HhhccCcCCHHHHHHHHHhcc
Q 013632 334 LQKYSEANDQLEFMERTLRWR 354 (439)
Q Consensus 334 i~k~~~~~~~l~~~~~~L~~r 354 (439)
-+.......+.+++-|..-
T Consensus 269 --~~~~~~~QY~WL~~dL~~v 287 (452)
T KOG1378|consen 269 --NFLKGTAQYQWLERDLASV 287 (452)
T ss_pred --cccccchHHHHHHHHHHHh
Confidence 2222334455666655443
No 107
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=53.53 E-value=58 Score=30.95 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=39.7
Q ss_pred EEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHHHHH
Q 013632 185 LVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKELDIL 264 (439)
Q Consensus 185 ~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 264 (439)
+|+|+|= +...|+.+++.+.-..... .......++|+.||.||.... ..+.++.+
T Consensus 3 vIGDIHG-----~~~~L~~lL~~i~~~~~~~---~~~~~~d~lvflGD~IDRGp~-----------------S~~vl~~l 57 (222)
T cd07413 3 FIGDIHG-----HAEKLVVLLHKLGYQELSG---VYRHPERQVVFLGDLIDRGPE-----------------IRELLEIV 57 (222)
T ss_pred EEEeccC-----CHHHHHHHHHHcCCCcccc---ccCCCCCEEEEeCcccCCCCC-----------------HHHHHHHH
Confidence 5677764 3456666666653211000 001134799999999986321 12333332
Q ss_pred HHhhcCCCcEEEcCCCCCCC
Q 013632 265 LTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 265 L~~l~~~i~V~imPG~~Dp~ 284 (439)
.+ +...-.+..+-||||-.
T Consensus 58 ~~-l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 58 KS-MVDAGHALAVMGNHEFN 76 (222)
T ss_pred HH-hhcCCCEEEEEccCcHH
Confidence 22 22222688889999964
No 108
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=53.52 E-value=51 Score=33.85 Aligned_cols=153 Identities=20% Similarity=0.146 Sum_probs=80.6
Q ss_pred CCeEEEEEecCCCCCC--CCC--hhHHH-------HHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCccc
Q 013632 179 EDKYVVLVSGLNVGSG--TSN--PLQFQ-------LLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLA 247 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~--~~~--~~~~~-------~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~ 247 (439)
...+|+-++|+|+|.. +.+ ....+ .=..|++--+ .+++++-||+.||.|.+ +.+
T Consensus 52 g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL-------~sE~PDlVVfTGD~i~g-~~t------- 116 (379)
T KOG1432|consen 52 GTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVL-------ASEKPDLVVFTGDNIFG-HST------- 116 (379)
T ss_pred CceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHH-------hccCCCEEEEeCCcccc-ccc-------
Confidence 4677999999999854 111 11111 0011222111 25789999999999987 321
Q ss_pred ccchhhhh-HhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCcccc-ccCCCC---------CcC-------CCcee
Q 013632 248 SKDQSRLF-EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNR-CLFPGS---------ATY-------NTFRS 309 (439)
Q Consensus 248 ~~~~~~~~-~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~-~lf~~~---------~~~-------~~~~~ 309 (439)
.+.+ ..++.+.-+ +...||-.++=||||=.+.+.++|=... ..+|.+ ..+ .+++.
T Consensus 117 ----~Da~~sl~kAvaP~---I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i 189 (379)
T KOG1432|consen 117 ----QDAATSLMKAVAPA---IDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQI 189 (379)
T ss_pred ----HhHHHHHHHHhhhH---hhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEe
Confidence 1111 123333333 4568999999999999877666653321 111211 001 13333
Q ss_pred ecCCcEEE----eCCEEEEEecCCChHH-HhhccC--cCCHHHHHHHHHhc
Q 013632 310 CTNPHCFE----LDNVRFLGTSGQTIDD-LQKYSE--ANDQLEFMERTLRW 353 (439)
Q Consensus 310 ~tNP~~~~----i~g~~~l~~sGq~i~d-i~k~~~--~~~~l~~~~~~L~~ 353 (439)
-+++..-. +...-||-.++..... ++.-.. .++.++.++..-+|
T Consensus 190 ~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~ 240 (379)
T KOG1432|consen 190 EGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKE 240 (379)
T ss_pred ccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhh
Confidence 33322211 3345667777766665 443222 35566677766644
No 109
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=52.97 E-value=46 Score=39.29 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=52.4
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeec-c-c--CCcccc
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA-E-L--LPSAYV 140 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~-~-~--~~~~lv 140 (439)
..+.++..+..+.|.|++..... ++ ++..+ ..+.|||++|++.+..- . + ....|.
T Consensus 945 ~~l~~~~~~~~v~v~g~i~~~~~-~~----------------TkkGm----af~~leD~~g~~e~~ifp~~~~~~~~~l~ 1003 (1046)
T PRK05672 945 AELLDVEDGRRVRVAGVVTHRQR-PG----------------TASGV----TFLTLEDETGMVNVVVWPGLWERQRREAL 1003 (1046)
T ss_pred HHHhhccCCCEEEEEEEEEEEEE-ec----------------CCCce----EEEEEecCCCCEEEEECHHHHHHHHHHhc
Confidence 34445556778899999987521 00 11111 36889999999999753 2 1 236689
Q ss_pred cCeEEEEEeEEc-CCC--cEEEEEEe
Q 013632 141 TGIVVALHGKET-SAG--EFLVLDVL 163 (439)
Q Consensus 141 tG~Vvav~G~~~-~~g--~F~V~di~ 163 (439)
.|.++.|+|++. .+| .+.|+++.
T Consensus 1004 ~~~~~~v~g~v~~~~~~~~~~~~~i~ 1029 (1046)
T PRK05672 1004 GARLLLVRGRVQNAEGVRHLVADRLE 1029 (1046)
T ss_pred cCCEEEEEEEEEecCCeEEEEEeeee
Confidence 999999999987 333 47777775
No 110
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=52.31 E-value=49 Score=25.34 Aligned_cols=47 Identities=17% Similarity=0.305 Sum_probs=35.1
Q ss_pred eEEEecCCceEEEeecc--c-CCcccccCeEEEEEeEEcC-CCc--EEEEEEe
Q 013632 117 HLVLEDESGRVKLGGAE--L-LPSAYVTGIVVALHGKETS-AGE--FLVLDVL 163 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~--~-~~~~lvtG~Vvav~G~~~~-~g~--F~V~di~ 163 (439)
.+.|||.+|++++..=. . ....+-.|.++.+.|+... +|. +.+.++.
T Consensus 22 ~~~l~D~tg~i~~~~f~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~l~~~~i~ 74 (83)
T cd04492 22 ALTLQDKTGEIEAKLWDASEEDEEKFKPGDIVHVKGRVEEYRGRLQLKIQRIR 74 (83)
T ss_pred EEEEEcCCCeEEEEEcCCChhhHhhCCCCCEEEEEEEEEEeCCceeEEEEEEE
Confidence 78999999999987521 1 2367889999999999874 442 6666665
No 111
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=52.11 E-value=47 Score=39.70 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=53.0
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCC--ceEEEecCCceEEEeec-c-c--CCc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGA-E-L--LPS 137 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~--d~l~LED~sgRV~L~~~-~-~--~~~ 137 (439)
+..+.+...+..+.|+|+|....+ ... + +++ ..+.|||++|.+.+..- . + ...
T Consensus 991 ~~~l~~~~~~~~v~v~g~i~~~k~------------~~T-------k--~G~~maf~~leD~tg~~e~vvFp~~y~~~~~ 1049 (1170)
T PRK07374 991 LSSLEEQPDKAKVSAIAMIPEMKQ------------VTT-------R--KGDRMAILQLEDLTGSCEAVVFPKSYERLSD 1049 (1170)
T ss_pred HHHHhcccCCCEEEEEEEEEEeEe------------ccc-------C--CCCEEEEEEEEECCCCEEEEECHHHHHHHHH
Confidence 344444456788999999987511 100 0 111 25899999999999752 2 2 236
Q ss_pred ccccCeEEEEEeEEcCC-C--cEEEEEEe
Q 013632 138 AYVTGIVVALHGKETSA-G--EFLVLDVL 163 (439)
Q Consensus 138 ~lvtG~Vvav~G~~~~~-g--~F~V~di~ 163 (439)
.|.+|.++.|+|++... | .+.|+++.
T Consensus 1050 ~l~~~~~~~v~g~v~~~~~~~~~~~~~i~ 1078 (1170)
T PRK07374 1050 HLMTDTRLLVWAKVDRRDDRVQLIIDDCR 1078 (1170)
T ss_pred HhccCCEEEEEEEEEecCCeEEEEEeeee
Confidence 79999999999998733 4 47777775
No 112
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=50.73 E-value=32 Score=32.88 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCCC--ChhHHHHHHHHHhccCCCcccccccCCc-eEEEEeccCCCcC
Q 013632 182 YVVLVSGLNVGSGTS--NPLQFQLLVDHITGHLGDEKEQGIAAEI-VHVVIAGNSIEIP 237 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~--~~~~~~~l~d~L~G~~g~~~~~~~~~~i-~~lIiaGn~i~~~ 237 (439)
.|+++||+| |.-.. ....+.++..++.-.- +..+ .-+|.+||++++.
T Consensus 2 ~i~~~sD~h-g~~~~~~~~~g~~~l~~~v~~~~--------~~~~~~l~v~~GD~~~~~ 51 (252)
T cd00845 2 TILHTNDLH-GHFEPAGGVGGAARLATLIKEER--------AENENTLLLDAGDNFDGS 51 (252)
T ss_pred EEEEecccc-cCccccCCcCCHHHHHHHHHHHH--------hcCCCeEEEeCCccCCCc
Confidence 589999999 54210 0123444444443320 1223 4678899999764
No 113
>PRK12366 replication factor A; Reviewed
Probab=50.39 E-value=36 Score=37.92 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=46.4
Q ss_pred Cccceeccc-CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc-cCCcccc
Q 013632 63 PICTVLELE-EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE-LLPSAYV 140 (439)
Q Consensus 63 ~v~~l~~~~-~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~-~~~~~lv 140 (439)
++..|.++. .+..|-|+|.|....+.+ ++.+..+ . ...-..+.|.|+||+|++.+=. .-...+-
T Consensus 397 ~i~dI~~~~~~~~~VdVig~V~~v~~~~-----~i~~k~G-~--------~~~~r~i~l~D~TG~I~vtlWg~~a~~~~~ 462 (637)
T PRK12366 397 KIKDILNLEEDDNDITVIARVVEDYPVN-----EFERSDG-S--------KGKVRNIELADGTGSIRLTLWDDDAEIEIK 462 (637)
T ss_pred cHHHhhcccCCCcEEEEEEEEEEccCce-----EEEecCC-C--------EeEEEEEEEEeCCCEEEEEEeccccccCCC
Confidence 455555553 577899999998653211 1111000 0 0012368999999999998521 1113467
Q ss_pred cCeEEEEEeEEcC
Q 013632 141 TGIVVALHGKETS 153 (439)
Q Consensus 141 tG~Vvav~G~~~~ 153 (439)
.|.+|+++|-...
T Consensus 463 ~G~vi~i~~~~V~ 475 (637)
T PRK12366 463 EGDAIKILHPYVK 475 (637)
T ss_pred CCCEEEEEeeEEE
Confidence 8999999997663
No 114
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=50.25 E-value=63 Score=24.75 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=36.5
Q ss_pred CceEEEecCCceEEEee-cc-c--CCcccccCeEEEEEeEEcCC---C--cEEEEEEe
Q 013632 115 DDHLVLEDESGRVKLGG-AE-L--LPSAYVTGIVVALHGKETSA---G--EFLVLDVL 163 (439)
Q Consensus 115 ~d~l~LED~sgRV~L~~-~~-~--~~~~lvtG~Vvav~G~~~~~---g--~F~V~di~ 163 (439)
--.+.|||.+|++.+.. .. . ....|..|.+|.+.|+.... | .+.|+++.
T Consensus 18 ~~~~~L~D~~~~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i~ 75 (78)
T cd04489 18 HLYFTLKDEDASIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEeCCeEEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Confidence 34789999999998853 32 2 24789999999999998722 3 47777774
No 115
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=49.63 E-value=61 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=41.7
Q ss_pred eEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEe
Q 013632 117 HLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVL 163 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~ 163 (439)
+..+-|....|++.-..+-++.|-.|+=|-++|++. +|.|.++++.
T Consensus 75 ~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVaeG~~~-~g~F~A~~vL 120 (155)
T PRK13159 75 SFTVIDKNAATQVEYTGILPDLFRDNQSVIANGRMQ-GGRFVANEVL 120 (155)
T ss_pred EEEEEcCCcEEEEEEccCCCccccCCCeEEEEEEEc-CCEEEEeEEE
Confidence 678889999999988877889999999999999996 6999999998
No 116
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=48.99 E-value=31 Score=26.19 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=33.6
Q ss_pred eEEEecCCceEEEeecc--c--CCcccccCeEEEEEeEEcCC-Cc--EEEEEE
Q 013632 117 HLVLEDESGRVKLGGAE--L--LPSAYVTGIVVALHGKETSA-GE--FLVLDV 162 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~--~--~~~~lvtG~Vvav~G~~~~~-g~--F~V~di 162 (439)
.+.|+|.+|.+.+..=. . ....+-+|.++.+.|+.... |. +.|+++
T Consensus 22 ~~~l~D~tg~~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~l~~~~i 74 (84)
T cd04485 22 FVTLEDLTGSIEVVVFPETYEKYRDLLKEDALLLVEGKVERRDGGLRLIAERI 74 (84)
T ss_pred EEEEEeCCCeEEEEECHHHHHHHHHHhcCCCEEEEEEEEEecCCceEEEeecc
Confidence 78899999999886421 2 23578899999999999853 32 555554
No 117
>PRK07218 replication factor A; Provisional
Probab=47.65 E-value=84 Score=33.26 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=49.9
Q ss_pred ccceecccCCCe-EEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccC
Q 013632 64 ICTVLELEEGRE-CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTG 142 (439)
Q Consensus 64 v~~l~~~~~~~~-~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG 142 (439)
..+|.+++.+.. +.|.|.|....+ +++..... . +.=-..+|.|+||||++..=. +...+-.|
T Consensus 162 ~~kI~DL~~g~~~V~v~g~Vl~~~~------r~f~~~dg------~----~~v~~giigDeTG~Ir~tlW~-~~~~l~~G 224 (423)
T PRK07218 162 DKKLIDLGPGDRGVNVEARVLELEH------REIDGRDG------E----TTILSGVLADETGRLPFTDWD-PLPEIEIG 224 (423)
T ss_pred ccchhhccCCCCceEEEEEEEEecc------eeEEcCCC------C----eEEEEEEEECCCceEEEEEec-ccccCCCC
Confidence 357888876544 889999986421 12221110 0 011257899999999997532 23457899
Q ss_pred eEEEEEeEEcC--CCcEEE
Q 013632 143 IVVALHGKETS--AGEFLV 159 (439)
Q Consensus 143 ~Vvav~G~~~~--~g~F~V 159 (439)
.+|-+.|-+.. +|.+.+
T Consensus 225 d~v~I~na~v~e~~G~~el 243 (423)
T PRK07218 225 ASIRIEDAYVREFRGVPSV 243 (423)
T ss_pred CEEEEeeeEEeccCCeEEE
Confidence 99999997764 355444
No 118
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=47.21 E-value=50 Score=36.99 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=49.2
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeec----ccCCccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA----ELLPSAY 139 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~----~~~~~~l 139 (439)
+..|.++..|+.|.|+|+|...-. .+. .+. -=++.+.|++|++.+..= .+-...|
T Consensus 50 ~~~i~~l~~g~~vtv~g~V~~~~~-~~~---------------~~~-----~~~v~l~D~tg~i~l~~F~~n~~~~~~~l 108 (681)
T PRK10917 50 LKPIAELRPGEKVTVEGEVLSAEV-VFG---------------KRR-----RLTVTVSDGTGNLTLRFFNFNQPYLKKQL 108 (681)
T ss_pred cCCHHHCCCCCEEEEEEEEEEEEE-ccC---------------Cce-----EEEEEEEECCeEEEEEEEccCcHHHHhhC
Confidence 456777888999999999886411 000 011 127899999999998642 1234679
Q ss_pred ccCeEEEEEeEEcC
Q 013632 140 VTGIVVALHGKETS 153 (439)
Q Consensus 140 vtG~Vvav~G~~~~ 153 (439)
-.|.-+.|.|++..
T Consensus 109 ~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 109 KVGKRVAVYGKVKR 122 (681)
T ss_pred CCCCEEEEEEEEEe
Confidence 99999999999964
No 119
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=46.90 E-value=1.1e+02 Score=26.51 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=41.5
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeeccc------CCcccccCeE
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL------LPSAYVTGIV 144 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~------~~~~lvtG~V 144 (439)
..|+.+.|-|-|... +.. +.=-.+.|-|.+|.+.+....- ....+-.|.+
T Consensus 12 ~~g~~V~i~Gwv~~~------------R~~------------gk~~Fi~LrD~~g~~Q~v~~~~~~~~~~~~~~l~~gs~ 67 (135)
T cd04317 12 HVGQEVTLCGWVQRR------------RDH------------GGLIFIDLRDRYGIVQVVFDPEEAPEFELAEKLRNESV 67 (135)
T ss_pred HCCCEEEEEEeEehh------------ccc------------CCEEEEEEecCCeeEEEEEeCCchhHHHHHhCCCCccE
Confidence 357889999999864 110 1112688899999999876521 1135889999
Q ss_pred EEEEeEEcC
Q 013632 145 VALHGKETS 153 (439)
Q Consensus 145 vav~G~~~~ 153 (439)
|.|.|.+..
T Consensus 68 V~V~G~~~~ 76 (135)
T cd04317 68 IQVTGKVRA 76 (135)
T ss_pred EEEEEEEEC
Confidence 999998764
No 120
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=43.94 E-value=1.9e+02 Score=24.16 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=39.4
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEec-CCceEEEeecccCCcccccCeEEEEEe
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED-ESGRVKLGGAELLPSAYVTGIVVALHG 149 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED-~sgRV~L~~~~~~~~~lvtG~Vvav~G 149 (439)
-.|+.+.+||.|.+. -++.+.+.|+. +.|.|.+.+. ....+..+.++=|.|
T Consensus 16 ~~gk~VrivGkv~~~--------------------------~~~g~~~~l~~~d~~~V~v~l~--~~~~~~~~~~vEviG 67 (109)
T PF08661_consen 16 FVGKTVRIVGKVESV--------------------------DPDGGSATLSTSDGGQVTVSLN--PPSDEELSKYVEVIG 67 (109)
T ss_dssp GTTSEEEEEEEEEEE---------------------------TTSSEEEEE-TTS-EEEEEES--S--SS---SEEEEEE
T ss_pred hCCCeEEEEEEEeeE--------------------------cCCCCEEEEEcCCCCEEEEEeC--CCCCCCCCCEEEEEE
Confidence 368899999999874 11366788885 4578888876 334444577889999
Q ss_pred EEcCCCc-EEEEEEeeC
Q 013632 150 KETSAGE-FLVLDVLDA 165 (439)
Q Consensus 150 ~~~~~g~-F~V~di~~P 165 (439)
++.+++. ..+..+.++
T Consensus 68 ~V~~~~~~~~i~~~~~~ 84 (109)
T PF08661_consen 68 KVNDDGTVLSIRYFSFT 84 (109)
T ss_dssp EE-TTS-EEEEEEEE--
T ss_pred EEcCCCCceEEEEEEec
Confidence 9987763 333333333
No 121
>PRK15491 replication factor A; Provisional
Probab=43.03 E-value=75 Score=32.99 Aligned_cols=76 Identities=11% Similarity=0.261 Sum_probs=48.0
Q ss_pred CccceecccCC-CeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEee-c-c---cCC
Q 013632 63 PICTVLELEEG-RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG-A-E---LLP 136 (439)
Q Consensus 63 ~v~~l~~~~~~-~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~-~-~---~~~ 136 (439)
++.+|.++.++ ..+.|.|.|...... +++++... ...++ -.+.|-|+||+|++.. + . +..
T Consensus 56 ~~~kI~dL~~~~~~v~i~arVl~~~~~-----R~f~r~dG-----s~g~v----~~~~v~DeTG~ir~tlW~~~a~~~~~ 121 (374)
T PRK15491 56 DTTKIADINESSSNVNFTAKVVSIFEP-----KEFNRNDG-----TTGRV----GNIIVADETGSIRLTLWDDLADLIKT 121 (374)
T ss_pred ccccHHHCCCCCCceEEEEEEeeccCC-----eeeecCCC-----CceEE----EEEEEEcCCCeEEEEEECchhhhhcc
Confidence 45678888765 778899999875322 22222100 00111 1468999999999985 2 1 122
Q ss_pred cccccCeEEEEEeEEc
Q 013632 137 SAYVTGIVVALHGKET 152 (439)
Q Consensus 137 ~~lvtG~Vvav~G~~~ 152 (439)
..|-.|.|+-+.|...
T Consensus 122 ~~le~G~v~~I~~~~~ 137 (374)
T PRK15491 122 GDIEVGKSLNISGYAK 137 (374)
T ss_pred CCcCCCCEEEEeeeec
Confidence 4578899999998854
No 122
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=41.61 E-value=53 Score=24.36 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.8
Q ss_pred eEEEecCCceEEEee-c--ccCCcccccCeEEEEEeEEcC
Q 013632 117 HLVLEDESGRVKLGG-A--ELLPSAYVTGIVVALHGKETS 153 (439)
Q Consensus 117 ~l~LED~sgRV~L~~-~--~~~~~~lvtG~Vvav~G~~~~ 153 (439)
.+.+.|.+|.+++.. + ......+-.|..+.+.|++..
T Consensus 21 ~~~~~D~~g~i~~~~F~~~~~~~~~~~~G~~~~v~Gkv~~ 60 (75)
T cd04488 21 KVTLSDGTGTLTLVFFNFQPYLKKQLPPGTRVRVSGKVKR 60 (75)
T ss_pred EEEEEcCCCEEEEEEECCCHHHHhcCCCCCEEEEEEEEee
Confidence 789999999998864 2 123467889999999999975
No 123
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=40.13 E-value=1.1e+02 Score=36.58 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=65.0
Q ss_pred ccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCC--ceEEEecCCceEEEeec-c-c--CCcccccCe
Q 013632 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD--DHLVLEDESGRVKLGGA-E-L--LPSAYVTGI 143 (439)
Q Consensus 70 ~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~--d~l~LED~sgRV~L~~~-~-~--~~~~lvtG~ 143 (439)
+..+..+.|+|+|....+ ... + .++ ..+.|||++|.+.+..- . + ....|..|.
T Consensus 988 ~~~~~~v~v~g~i~~~~~------------~~t-------k--~G~~maf~~leD~~g~~e~~vfp~~~~~~~~~l~~~~ 1046 (1151)
T PRK06826 988 LKDGDKVIIGGIITEVKR------------KTT-------R--NNEMMAFLTLEDLYGTVEVIVFPKVYEKYRSLLNEDN 1046 (1151)
T ss_pred ccCCcEEEEEEEEEEeEe------------ecc-------C--CCCeEEEEEEEECCCcEEEEECHHHHHHHHHHhccCC
Confidence 345778899999987511 100 0 111 25789999999999753 2 2 236799999
Q ss_pred EEEEEeEEcC--CC--cEEEEEEeeCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCC
Q 013632 144 VVALHGKETS--AG--EFLVLDVLDAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLG 213 (439)
Q Consensus 144 Vvav~G~~~~--~g--~F~V~di~~P~~~~~~~~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g 213 (439)
++.|.|++.. +| .+.|+++. |-.. . .. ...+|-+ + ........++.|.+.|...-|
T Consensus 1047 ~~~v~g~v~~~~~~~~~~~~~~~~-~l~~---~---~~-~~~~i~~-~-----~~~~~~~~~~~l~~~l~~~~G 1106 (1151)
T PRK06826 1047 IVLIKGRVSLREDEEPKLICEEIE-PLVI---N---SE-KKLYLRV-E-----DKKDIKLKLKELKEILKQYPG 1106 (1151)
T ss_pred EEEEEEEEEecCCCceEEEEeeee-cHhh---C---cC-CeEEEEe-c-----ccccCHHHHHHHHHHHHhCCC
Confidence 9999999872 34 47787774 2110 0 01 1122222 2 111234567888889877655
No 124
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=39.51 E-value=82 Score=31.94 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=51.3
Q ss_pred ceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeec---ccCCcccccC
Q 013632 66 TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA---ELLPSAYVTG 142 (439)
Q Consensus 66 ~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~---~~~~~~lvtG 142 (439)
.|.+++.|+.+-.+..|... +++ +. .....|. .+.|+|.||.|+-..= .-....+-+|
T Consensus 4 ~i~~l~~g~~v~~~~lv~~~-~~~--------~~------knG~~yl----~l~l~D~tG~I~ak~W~~~~~~~~~~~~g 64 (314)
T PRK13480 4 GIEELEVGEQVDHFLLIKSA-TKG--------VA------SNGKPFL----TLILQDKSGDIEAKLWDVSPEDEATYVPE 64 (314)
T ss_pred hHhhcCCCCEeeEEEEEEEc-eee--------ec------CCCCeEE----EEEEEcCCcEEEEEeCCCChhhHhhcCCC
Confidence 56778888887777665542 110 00 0011233 6899999999987542 1134678999
Q ss_pred eEEEEEeEEcC-CCc--EEEEEEeeC
Q 013632 143 IVVALHGKETS-AGE--FLVLDVLDA 165 (439)
Q Consensus 143 ~Vvav~G~~~~-~g~--F~V~di~~P 165 (439)
.||-|+|...+ +|. +.|.++-.+
T Consensus 65 ~vv~v~G~v~~y~g~~Ql~i~~i~~~ 90 (314)
T PRK13480 65 TIVHVKGDIINYRGRKQLKVNQIRLA 90 (314)
T ss_pred CEEEEEEEEEEECCcceEEEEEeEEC
Confidence 99999999873 565 455566543
No 125
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=38.83 E-value=2.2e+02 Score=33.91 Aligned_cols=101 Identities=19% Similarity=0.149 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHccccCCCCC-C----CccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCC
Q 013632 38 QIYFARLHLMRALLYSLVPNWKPH-L----PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFM 112 (439)
Q Consensus 38 ~iY~~Rl~~lr~~l~~~a~~k~~~-~----~v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~ 112 (439)
.....|+++|+..-..-. .-||. . .+..+.+-..++++.|-|.|... +..
T Consensus 612 ~~~~~r~~k~~~l~~~g~-~pyp~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~------------R~~------------ 666 (1094)
T PRK02983 612 EQVRVRLAKLEALRAAGV-DPYPVGVPPTHTVAEALDAPTGEEVSVSGRVLRI------------RDY------------ 666 (1094)
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCCCCcCccCHHHHHHhcCCCEEEEEEEEEEE------------eeC------------
Confidence 346678888876655432 22331 1 23344444468889999999875 111
Q ss_pred CCCceEEEecCCceEEEeeccc--C-------CcccccCeEEEEEeEEc--CCCcEEE--EEEe
Q 013632 113 HPDDHLVLEDESGRVKLGGAEL--L-------PSAYVTGIVVALHGKET--SAGEFLV--LDVL 163 (439)
Q Consensus 113 ~~~d~l~LED~sgRV~L~~~~~--~-------~~~lvtG~Vvav~G~~~--~~g~F~V--~di~ 163 (439)
++---+.|-|.+|+|++..+.- . ...+-.|.+|+|.|++. ..|.+++ ++|-
T Consensus 667 G~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~gd~V~v~G~v~~t~~ge~ei~~~~i~ 730 (1094)
T PRK02983 667 GGVLFADLRDWSGELQVLLDASRLEQGSLADFRAAVDLGDLVEVTGTMGTSRNGTLSLLVTSWR 730 (1094)
T ss_pred CCeEEEEEEeCCeeEEEEEECCccchhhHHHHHhcCCCCCEEEEEEEEEEcCCCCEEEEEeEEE
Confidence 1123688999999999987531 1 12366899999999876 3455544 5553
No 126
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=38.66 E-value=71 Score=23.97 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=17.9
Q ss_pred EEEecCCCCCCCeEEEEECCCCCE
Q 013632 406 RLVCIPKFSETGVAVVVNLKNLEC 429 (439)
Q Consensus 406 ~lv~vP~F~~t~~~vlvnl~tl~~ 429 (439)
..+.||.|-+.|..+.||.++.+.
T Consensus 30 ~~i~VP~FI~~Gd~I~VdT~~g~Y 53 (56)
T PF09285_consen 30 AEIQVPLFIEEGDKIKVDTRDGSY 53 (56)
T ss_dssp -EEEEETT--TT-EEEEETTTTEE
T ss_pred CEEEccceecCCCEEEEECCCCeE
Confidence 368899999999999999999765
No 127
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=36.75 E-value=1.3e+02 Score=24.89 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=41.6
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeeccc--------CCcccccC
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL--------LPSAYVTG 142 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~--------~~~~lvtG 142 (439)
..|+++.|-|-|... +.. +.--.+.|-|.+|.+.+..+.- ....|-.|
T Consensus 10 ~~g~~V~v~Gwv~~~------------R~~------------g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~e 65 (108)
T cd04316 10 LDGEEVTVAGWVHEI------------RDL------------GGIKFVILRDREGIVQVTAPKKKVDKELFKTVRKLSRE 65 (108)
T ss_pred hCCCEEEEEEEEEee------------ecc------------CCeEEEEEecCCeeEEEEEeCCCCCHHHHHHHhCCCCc
Confidence 357889999999864 110 1123688899999998876521 11357899
Q ss_pred eEEEEEeEEcC
Q 013632 143 IVVALHGKETS 153 (439)
Q Consensus 143 ~Vvav~G~~~~ 153 (439)
.+|.|.|.+..
T Consensus 66 s~V~V~G~v~~ 76 (108)
T cd04316 66 SVISVTGTVKA 76 (108)
T ss_pred CEEEEEEEEEe
Confidence 99999998764
No 128
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=36.63 E-value=2.7e+02 Score=29.98 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=33.3
Q ss_pred eEEEecCCceEEEeeccc--C------CcccccCeEEEEEeEEcC--CCcEE--EEEEe
Q 013632 117 HLVLEDESGRVKLGGAEL--L------PSAYVTGIVVALHGKETS--AGEFL--VLDVL 163 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~~--~------~~~lvtG~Vvav~G~~~~--~g~F~--V~di~ 163 (439)
-+.|-|.+|+|.+..+.- . ...|-.|.+|+|.|.+.. .|.++ |+++-
T Consensus 74 Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~ 132 (491)
T PRK00484 74 FATLQDGSGRIQLYVSKDDVGEEALEAFKKLDLGDIIGVEGTLFKTKTGELSVKATELT 132 (491)
T ss_pred EEEEEcCCccEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEeEEE
Confidence 688999999999977531 1 124778999999998874 45544 45554
No 129
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=35.82 E-value=49 Score=31.86 Aligned_cols=46 Identities=17% Similarity=0.451 Sum_probs=29.6
Q ss_pred HHHHHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEE
Q 013632 260 ELDILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF 316 (439)
Q Consensus 260 ~ld~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~ 316 (439)
.++++++.+.. .+||++-||+.+... +-..--+|+ ++.-..||+|+
T Consensus 43 ~~~~~v~~ik~~~lPvilfp~~~~~i~-----~~aDa~l~~------svlNs~~~~~i 89 (223)
T TIGR01768 43 KTDTLIEALRRYGLPIILFPSNPTNVS-----RDADALFFP------SVLNSDDPYWI 89 (223)
T ss_pred HHHHHHHHHhccCCCEEEeCCCccccC-----cCCCEEEEE------EeecCCCchHH
Confidence 44444444422 489999999998875 224445555 45566788883
No 130
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=35.65 E-value=79 Score=23.72 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.5
Q ss_pred EEEecCCCCCCCeEEEEECCCCCE
Q 013632 406 RLVCIPKFSETGVAVVVNLKNLEC 429 (439)
Q Consensus 406 ~lv~vP~F~~t~~~vlvnl~tl~~ 429 (439)
..|.||.|-+.|..+.||.++.+.
T Consensus 30 ~~i~VP~FI~~Gd~I~V~T~~g~Y 53 (56)
T cd05794 30 AEVQVPLFIKEGEKIKVDTRTGEY 53 (56)
T ss_pred CEEEcCCeecCCCEEEEECCCCcE
Confidence 368999999999999999999765
No 131
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=35.26 E-value=1.1e+02 Score=29.92 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=26.4
Q ss_pred EEEEEecCCCCCC---------CCChhHHHHHHHHHhccCCCcccccccCCceEEEE-eccCCCcC
Q 013632 182 YVVLVSGLNVGSG---------TSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVI-AGNSIEIP 237 (439)
Q Consensus 182 ~i~~vSgl~lgs~---------~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIi-aGn~i~~~ 237 (439)
.|+.+||+| |.- ......+.++..++... .++.+..|++ +||++++.
T Consensus 2 ~il~t~D~H-g~~~~~~~~~~~~~~~gg~~~l~~~i~~~--------r~~~~~~l~ld~GD~~~gs 58 (277)
T cd07410 2 RILATSDLH-GNLLPYDYYTDKPDASGGLARVATLIKKA--------RAENPNTLLIDNGDTIQGS 58 (277)
T ss_pred eEEEEeccc-cceeCccccCCCcCCccCHHHHHHHHHHH--------HhcCCCeEEEeCCccCCcc
Confidence 467778887 431 00113455555555432 1234566666 99999874
No 132
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=34.51 E-value=1e+02 Score=24.57 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=28.0
Q ss_pred eEEEecCCc-eEEEeeccc----C-CcccccCeEEEEEeEEcC
Q 013632 117 HLVLEDESG-RVKLGGAEL----L-PSAYVTGIVVALHGKETS 153 (439)
Q Consensus 117 ~l~LED~sg-RV~L~~~~~----~-~~~lvtG~Vvav~G~~~~ 153 (439)
.+.|.|.+| ++.+..+.- + ...+-.|.+|+|.|.+..
T Consensus 20 Fi~LrD~~g~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~~ 62 (86)
T cd04321 20 FADLRDPNGDIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQL 62 (86)
T ss_pred EEEEECCCCCEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEEe
Confidence 688999999 689876521 1 135778999999998764
No 133
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=32.56 E-value=20 Score=31.68 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=32.7
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCC
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI 234 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i 234 (439)
..||+|+=|+++|+++ ...|..|.++|.. +| ...+.-.|=.||.|
T Consensus 2 ~~yiaLLRGINVGG~n--ki~MaeLr~~l~~-~G-------f~~V~Tyi~SGNvv 46 (137)
T PF08002_consen 2 TTYIALLRGINVGGKN--KIKMAELREALED-LG-------FTNVRTYIQSGNVV 46 (137)
T ss_dssp EEEEEEESS-SBTTBS-----HHHHHHHHHH-CT--------EEEEEETTTTEEE
T ss_pred ceEEEEEcceecCCCC--cccHHHHHHHHHH-cC-------CCCceEEEeeCCEE
Confidence 3699999999999864 4689999999977 35 35567888888876
No 134
>PRK15491 replication factor A; Provisional
Probab=32.37 E-value=1.3e+02 Score=31.37 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=34.0
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEee
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG 131 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~ 131 (439)
..+|.++..++.+-|+|.|....+. +++.+.. .-...-..+.|.|+||+|++..
T Consensus 276 f~~I~dl~~~~~~dv~G~V~~v~~~-----~~~~~~~---------G~~~~~r~i~l~D~Tg~Ir~tl 329 (374)
T PRK15491 276 FTPIADIIPGQPYSIKGAVSGLGDL-----KEFTKSD---------GSENKVSNIYVSDDTGRIRIAL 329 (374)
T ss_pred ccCHHHcCCCCceeEEEEEEEcCCc-----EEEEccC---------CCEeEEEeEEEEeCCCcEEEEE
Confidence 3566788888899999999865321 1221100 0000123689999999999975
No 135
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=31.95 E-value=1.1e+02 Score=36.51 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=48.6
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeec-c-c--CCcccccCeEEEE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA-E-L--LPSAYVTGIVVAL 147 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~-~-~--~~~~lvtG~Vvav 147 (439)
.+..+.|+|+|....+.+ + ++++ .=..+.|||++|++.+..- . + ....|..|.++.|
T Consensus 942 ~~~~v~v~g~i~~~~~~~--------t--------k~g~---~maf~~leD~tg~~e~~vFp~~y~~~~~~l~~~~~~~v 1002 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIR--------T--------KKGQ---KMAFITFCDQNDEMEAVVFPETYIHFSDKLQEGAIVLV 1002 (1107)
T ss_pred CCCEEEEEEEEEEeEeec--------C--------CCCC---eEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCCEEEE
Confidence 466789999998751100 0 0000 0126899999999999753 2 2 2367999999999
Q ss_pred EeEEc-CCC--cEEEEEEe
Q 013632 148 HGKET-SAG--EFLVLDVL 163 (439)
Q Consensus 148 ~G~~~-~~g--~F~V~di~ 163 (439)
.|++. .+| .+.|+++.
T Consensus 1003 ~G~v~~~~~~~~~~~~~i~ 1021 (1107)
T PRK06920 1003 DGTIELRNHKLQWIVNGLY 1021 (1107)
T ss_pred EEEEEecCCcEEEEEeecc
Confidence 99987 333 47777775
No 136
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=30.40 E-value=2e+02 Score=30.44 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=47.9
Q ss_pred ccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeeccc-------CCcccccC
Q 013632 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL-------LPSAYVTG 142 (439)
Q Consensus 70 ~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~-------~~~~lvtG 142 (439)
-..|+.+.|-|.|... +.. ++---+.|-|.+|.|.+..+.- ....|-.|
T Consensus 13 ~~~g~~V~i~GrV~~~------------R~~------------gk~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~L~~g 68 (437)
T PRK05159 13 ELDGEEVTLAGWVHEI------------RDL------------GGIAFLILRDRSGIIQVVVKKKVDEELFETIKKLKRE 68 (437)
T ss_pred hhCCCEEEEEEEeEee------------ecC------------CCeEEEEEEcCCcEEEEEEeCCccHHHHHHHhCCCCC
Confidence 3358899999999864 110 1112588999999999987531 12468899
Q ss_pred eEEEEEeEEcCCC----c--EEEEEEe
Q 013632 143 IVVALHGKETSAG----E--FLVLDVL 163 (439)
Q Consensus 143 ~Vvav~G~~~~~g----~--F~V~di~ 163 (439)
.+|.|.|++...+ . ..|++|-
T Consensus 69 s~V~v~G~v~~~~~~~~~~el~~~~i~ 95 (437)
T PRK05159 69 SVVSVTGTVKANPKAPGGVEVIPEEIE 95 (437)
T ss_pred cEEEEEEEEEcCCCCCCCEEEEEeEEE
Confidence 9999999988633 2 4555544
No 137
>PRK14699 replication factor A; Provisional
Probab=29.35 E-value=81 Score=33.98 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=42.8
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEee--cccCC-cccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG--AELLP-SAYV 140 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~--~~~~~-~~lv 140 (439)
..+|.++..++.+-|+|+|....+.+ ++.+..+ .. ..-..+.|.|.||+|+|.. +.... ..+-
T Consensus 386 ~~~I~die~~~~vdV~G~V~~v~~~~-----~~~~~~g-------~~--~~vr~i~l~D~TG~Ir~tlWg~~A~~~~~~~ 451 (484)
T PRK14699 386 FTDIADIIPGESYSVQGKVSEIGELR-----EFEREDG-------TE--NVVANLQLKDETGSIRLTLWGEQAYVIEDLD 451 (484)
T ss_pred cccHHHccCCCeeEEEEEEEEcCCcc-----eEEecCC-------CE--EEEEEEEEEcCCCeEEEEEcchhhhhccccC
Confidence 35677788899999999999764322 2221000 00 0123799999999999974 32222 2444
Q ss_pred cCeEEEEEeE
Q 013632 141 TGIVVALHGK 150 (439)
Q Consensus 141 tG~Vvav~G~ 150 (439)
.|--|-+.--
T Consensus 452 ~~~~v~~~~~ 461 (484)
T PRK14699 452 IDSEIQIIDA 461 (484)
T ss_pred CCCeEEEech
Confidence 4554444433
No 138
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=27.03 E-value=69 Score=24.02 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEecCCCCCCCeEEEEECCCCCE
Q 013632 407 LVCIPKFSETGVAVVVNLKNLEC 429 (439)
Q Consensus 407 lv~vP~F~~t~~~vlvnl~tl~~ 429 (439)
.|.||.|-+.|..+.||.++.+.
T Consensus 31 ~i~VP~FI~~Gd~I~V~T~~g~Y 53 (56)
T smart00841 31 VVQVPLFINEGDKIKVDTRTGEY 53 (56)
T ss_pred EEEcCCcccCCCEEEEECCCCcE
Confidence 68899999999999999998764
No 139
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=26.96 E-value=94 Score=30.11 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEE
Q 013632 259 KELDILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF 316 (439)
Q Consensus 259 ~~ld~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~ 316 (439)
+.++++++.+.. .+||++-||+.+.... -+.--+|+ ++.-..||+|+
T Consensus 47 ~~~~~~v~~ik~~~lPvilfp~~~~~i~~-----~aDa~l~~------svlNs~~~~~i 94 (232)
T PRK04169 47 ENVDELVKAIKEYDLPVILFPGNIEGISP-----GADAYLFP------SVLNSRNPYWI 94 (232)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCccccCc-----CCCEEEEE------EEecCCCcchH
Confidence 445555555543 5899999999988752 24545555 45556788885
No 140
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=26.55 E-value=56 Score=31.04 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcC--CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEE
Q 013632 259 KELDILLTQIAA--GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF 316 (439)
Q Consensus 259 ~~ld~~L~~l~~--~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~ 316 (439)
+.++++++.+.. ++||++-||+.+... +-..--+|+ ++.-..||+|+
T Consensus 39 ~~~~~~v~~ik~~~~lPvilfp~~~~~i~-----~~aD~~~~~------sllns~~~~~i 87 (205)
T TIGR01769 39 SNLDQTVKKIKKITNLPVILFPGNVNGLS-----RYADAVFFM------SLLNSADTYFI 87 (205)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCCccccC-----cCCCEEEEE------EeecCCCcchh
Confidence 445555555543 689999999999875 234555555 45556788883
No 141
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=26.00 E-value=46 Score=33.71 Aligned_cols=40 Identities=40% Similarity=0.545 Sum_probs=33.0
Q ss_pred EecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc
Q 013632 83 YKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE 133 (439)
Q Consensus 83 ~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~ 133 (439)
.|..||-|||.+.+.+|.- ...|.+|+|-.||-|+=.|.+
T Consensus 168 tKqLkLdPsiyesi~kerv-----------~~GDViYIEaNsGavKrvGRs 207 (456)
T KOG1942|consen 168 TKQLKLDPSIYESIQKERV-----------EVGDVIYIEANSGAVKRVGRS 207 (456)
T ss_pred cceeccChHHHHHHHHhhh-----------ccCcEEEEEeccchhhccccc
Confidence 3667888999999998753 358999999999999888763
No 142
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=25.75 E-value=1.4e+02 Score=33.23 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=48.7
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEec-CCceEEEee-c-ccCCcccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED-ESGRVKLGG-A-ELLPSAYV 140 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED-~sgRV~L~~-~-~~~~~~lv 140 (439)
+..|.++..|+.+.|.|+|..... .. ...+ + --++.++| .+|.+.+.. + .+....|.
T Consensus 23 ~~~i~~~~~g~~~~~~~~v~~~~~------------~~---~~~~-~----~~~~~~~d~~~~~~~~~~F~~~~~~~~~~ 82 (630)
T TIGR00643 23 LQTIGELLPGERATIVGEVLSHCI------------FG---FKRR-K----VLKLRLKDGGYKKLELRFFNRAFLKKKFK 82 (630)
T ss_pred ccCHHHcCCCCEEEEEEEEEEeEe------------cc---CCCC-c----eEEEEEEECCCCEEEEEEECCHHHHhhCC
Confidence 346777888999999999875210 00 0001 1 12789999 999998874 2 12347799
Q ss_pred cCeEEEEEeEEcC
Q 013632 141 TGIVVALHGKETS 153 (439)
Q Consensus 141 tG~Vvav~G~~~~ 153 (439)
.|.-+.|.|++..
T Consensus 83 ~g~~~~~~Gk~~~ 95 (630)
T TIGR00643 83 VGSKVVVYGKVKS 95 (630)
T ss_pred CCCEEEEEEEEEe
Confidence 9999999999864
No 143
>PF12997 DUF3881: Domain of unknown function, E. rectale Gene description (DUF3881); InterPro: IPR024541 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=24.90 E-value=3.4e+02 Score=27.11 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=69.0
Q ss_pred EEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEeeCCCCCCCCCC--------CCCCCCeEEEEEecCC
Q 013632 119 VLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP--------LNSGEDKYVVLVSGLN 190 (439)
Q Consensus 119 ~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~~P~~~~~~~~~--------~~~~~~~~i~~vSgl~ 190 (439)
.+.+..|+.-.... ..+.+|+=|+|.|.++++|.|.. +.+||-........ ..+ ...|+.++.+..
T Consensus 31 ~~~~~~~~~~~E~~----ke~~~~~GI~v~G~~d~~~~F~~-eyYfPY~~g~~~s~~e~~svErh~d-ke~YaGicdd~~ 104 (283)
T PF12997_consen 31 VVSDDEGEDFCELR----KEFGPGMGITVCGEMDEDGSFER-EYYFPYFRGSGISSYEDVSVERHAD-KESYAGICDDYR 104 (283)
T ss_pred EEEecCCCEEEEEe----eccCCCccEEEEEEECCCCcEEE-EEEeeEEecCceeeeeeEEEEEEec-cceeEEEecCcc
Confidence 33444444444333 34577899999999999888866 56778765432211 112 578999999999
Q ss_pred CCCCCCChhHHHHHHHHHhcc-CCCcccccccCCceEEEEeccCCCcC
Q 013632 191 VGSGTSNPLQFQLLVDHITGH-LGDEKEQGIAAEIVHVVIAGNSIEIP 237 (439)
Q Consensus 191 lgs~~~~~~~~~~l~d~L~G~-~g~~~~~~~~~~i~~lIiaGn~i~~~ 237 (439)
+|=. ....++-.+||+.-. ++. ...++..|.++|=++++.
T Consensus 105 ~Gis--LIFyLqN~~eY~~~~~~~~-----~~~~~~~v~LsgLa~~Gk 145 (283)
T PF12997_consen 105 VGIS--LIFYLQNVMEYLKEKQLGK-----SSIKIKSVTLSGLAVEGK 145 (283)
T ss_pred cCce--EEEEEcCHHHHHHHHhhcc-----CCCccceEEEEeeecCCE
Confidence 9854 123455667777654 221 245678999999988874
No 144
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=23.94 E-value=4e+02 Score=21.66 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=28.8
Q ss_pred eEEEecCCceEEEeecccC----------CcccccCeEEEEEeEEcC
Q 013632 117 HLVLEDESGRVKLGGAELL----------PSAYVTGIVVALHGKETS 153 (439)
Q Consensus 117 ~l~LED~sgRV~L~~~~~~----------~~~lvtG~Vvav~G~~~~ 153 (439)
.+.|-|.+|.+.+..+.-. ...|-.|.+|.|.|.+..
T Consensus 20 Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~ 66 (102)
T cd04320 20 FLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKK 66 (102)
T ss_pred EEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEEC
Confidence 6889999999999875311 135778999999999865
No 145
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=23.87 E-value=2.6e+02 Score=22.88 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=28.7
Q ss_pred ceEEEecCCceEEEeecc-cC------CcccccCeEEEEEeEEcC
Q 013632 116 DHLVLEDESGRVKLGGAE-LL------PSAYVTGIVVALHGKETS 153 (439)
Q Consensus 116 d~l~LED~sgRV~L~~~~-~~------~~~lvtG~Vvav~G~~~~ 153 (439)
-.+.|.|.+|.+.+..+. .. ...+-.|.+|+|.|.+..
T Consensus 18 ~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~ 62 (103)
T cd04319 18 AFIVLRDSTGIVQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKA 62 (103)
T ss_pred EEEEEecCCeeEEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEE
Confidence 368899999999987653 11 135778999999998764
No 146
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=22.71 E-value=3.1e+02 Score=26.99 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=30.5
Q ss_pred eEEEecCCc--eEEEeecc-------cCCcccccCeEEEEEeEEcC-CCcEEEEEEeeC
Q 013632 117 HLVLEDESG--RVKLGGAE-------LLPSAYVTGIVVALHGKETS-AGEFLVLDVLDA 165 (439)
Q Consensus 117 ~l~LED~sg--RV~L~~~~-------~~~~~lvtG~Vvav~G~~~~-~g~F~V~di~~P 165 (439)
.+.|-|.|| -+...... +....+ .|.+|.|+|.++. ...+.|+.|...
T Consensus 90 ~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vsr~~~ql~ve~i~~~ 147 (256)
T PF10451_consen 90 ILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVSRNERQLDVERIELV 147 (256)
T ss_dssp EEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEESSSEEEEEEEEEEE
T ss_pred EEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEccCcEEEEEEEEEcc
Confidence 678889999 45554321 233455 9999999999982 234778887755
No 147
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=22.65 E-value=2.8e+02 Score=30.68 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=42.2
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeeccc-----CCcccccCeEE
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL-----LPSAYVTGIVV 145 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~-----~~~~lvtG~Vv 145 (439)
..|+.+.|-|.|... +.. ++---+.|-|.+|.|.+..+.- ....|-.|.+|
T Consensus 13 ~~g~~V~l~GwV~~~------------R~~------------Gkl~Fi~LrD~sg~iQvv~~~~~~~~~~~~~L~~esvV 68 (583)
T TIGR00459 13 HLGQTVTLAGWVNRR------------RDL------------GGLIFIDLRDRSGIVQVVCDPDADALKLAKGLRNEDVV 68 (583)
T ss_pred hCCCEEEEEEEEEEE------------EcC------------CCcEEEEEEeCCccEEEEEeCCHHHHHHHhcCCCCCEE
Confidence 357899999999865 111 1123688999999999987531 12457889999
Q ss_pred EEEeEEc
Q 013632 146 ALHGKET 152 (439)
Q Consensus 146 av~G~~~ 152 (439)
+|.|.+.
T Consensus 69 ~V~G~v~ 75 (583)
T TIGR00459 69 QVKGKVS 75 (583)
T ss_pred EEEEEEE
Confidence 9999985
No 148
>PF11256 DUF3055: Protein of unknown function (DUF3055); InterPro: IPR021415 This family of proteins with unknown function appear to be restricted to Firmicutes.
Probab=22.57 E-value=1.7e+02 Score=23.75 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=33.8
Q ss_pred cEEEeCCcCccceEEEecCCC-CcEEEEecCCCCCCCeEEEEECCCCC
Q 013632 382 HVYFAGNQQKFETRLLKGSDR-QLVRLVCIPKFSETGVAVVVNLKNLE 428 (439)
Q Consensus 382 ~V~~~Gn~~~f~~~~~~~~~~-~~~~lv~vP~F~~t~~~vlvnl~tl~ 428 (439)
-|=|+|+.+.|.-.++...-. .++.|+|+ .+|...|++..+|+
T Consensus 12 Fv~f~~e~~RyDlai~~T~rF~GK~LV~~m----Qtgr~ailg~dDle 55 (81)
T PF11256_consen 12 FVGFVGESHRYDLAIVYTNRFYGKPLVLCM----QTGRFAILGPDDLE 55 (81)
T ss_pred EEEEecCCceEEEEEEEeccccCceEEEEe----cCCceEEEChhhcc
Confidence 466889999998888764322 26788999 89999999988876
No 149
>PRK06386 replication factor A; Reviewed
Probab=22.52 E-value=3.7e+02 Score=27.87 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=49.7
Q ss_pred cceecccC-CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCe
Q 013632 65 CTVLELEE-GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143 (439)
Q Consensus 65 ~~l~~~~~-~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~ 143 (439)
.+|.|+++ +..+.|.|.|....+ +++.... ..... -.-.|-|+||||++..=. ....+-.|.
T Consensus 3 ~kI~DI~~~~~~V~v~akVl~~~~------r~i~~~~------g~~~~----~~gllgDeTG~I~fT~W~-~~~~l~~Gd 65 (358)
T PRK06386 3 SKISDINAARQNVDLKVKVLSLNK------RTIKNDR------GETIY----YYGIIGDETGTVPFTAWE-FPDAVKSGD 65 (358)
T ss_pred cchhhcCCCCCcEEEEEEEEEccc------eEEecCC------CCeEE----EEEEEECCcceEEEEecC-CcccCCCCC
Confidence 46888875 556789999986420 1121110 00011 134699999999998843 356788999
Q ss_pred EEEEEeEEcC--CCcEEE
Q 013632 144 VVALHGKETS--AGEFLV 159 (439)
Q Consensus 144 Vvav~G~~~~--~g~F~V 159 (439)
++-+.+.... +|.+.+
T Consensus 66 ~v~i~na~v~~~~G~~~L 83 (358)
T PRK06386 66 VIEIKYCYSKEYNGKIRI 83 (358)
T ss_pred EEEEEeEEEeeECCEEEE
Confidence 9999988764 466554
No 150
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=22.52 E-value=4e+02 Score=28.80 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=44.3
Q ss_pred CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cC-------CcccccCe
Q 013632 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LL-------PSAYVTGI 143 (439)
Q Consensus 73 ~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~-------~~~lvtG~ 143 (439)
++.+.|-|.|... +.. +.---+.|.|.+|+|.+..+. +. ...+-.|.
T Consensus 53 ~~~v~v~Grv~~~------------R~~------------gk~~F~~l~D~~g~iQ~~~~~~~~~~~~~~~~~~~l~~gd 108 (496)
T TIGR00499 53 NIEVSIAGRIMAR------------RSM------------GKATFITLQDESGQIQLYVNKDDLPEDFYEFDEYLLDLGD 108 (496)
T ss_pred CCEEEEEEEEEEE------------ecC------------CCeEEEEEEcCCccEEEEEECCcCcHHHHHHHHhcCCCCC
Confidence 5668899999875 110 112368999999999998652 11 11367899
Q ss_pred EEEEEeEEcC--CCcEE--EEEEe
Q 013632 144 VVALHGKETS--AGEFL--VLDVL 163 (439)
Q Consensus 144 Vvav~G~~~~--~g~F~--V~di~ 163 (439)
+|+|.|.+.. .|.+. |++|-
T Consensus 109 ~V~v~G~~~~t~~gelel~~~~i~ 132 (496)
T TIGR00499 109 IIGVTGYPFKTKTGELSVHVTELQ 132 (496)
T ss_pred EEEEEEEEEECCCCcEEEEeeEEE
Confidence 9999998763 45444 34543
No 151
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=22.37 E-value=4.4e+02 Score=28.60 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cC-------CcccccCe
Q 013632 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LL-------PSAYVTGI 143 (439)
Q Consensus 73 ~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~-------~~~lvtG~ 143 (439)
++.+.|-|.|... +.. +.---+.|-|.+|+|.+..+. +. ...+-.|.
T Consensus 65 ~~~v~v~Grv~~~------------R~~------------Gk~~F~~lrD~~g~iQ~~~~~~~~~~~~~~~~~~~l~~Gd 120 (505)
T PRK12445 65 NIEVSVAGRMMTR------------RIM------------GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGD 120 (505)
T ss_pred CCEEEEEEEEEEE------------ecC------------CCcEEEEEEeCCccEEEEEECCccchhhHHHHHhcCCCCC
Confidence 5568899999864 111 123368899999999987652 11 13477899
Q ss_pred EEEEEeEEcC--CCcE--EEEEEee
Q 013632 144 VVALHGKETS--AGEF--LVLDVLD 164 (439)
Q Consensus 144 Vvav~G~~~~--~g~F--~V~di~~ 164 (439)
+|+|.|.+.. .|.+ .|+++-.
T Consensus 121 ~V~v~G~~~~t~~gelel~~~~~~l 145 (505)
T PRK12445 121 IIGARGTLFKTQTGELSIHCTELRL 145 (505)
T ss_pred EEEEEEEEEecCCCcEEEEEeEEEE
Confidence 9999998864 3554 4455543
No 152
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=21.60 E-value=3.1e+02 Score=30.76 Aligned_cols=71 Identities=25% Similarity=0.247 Sum_probs=50.8
Q ss_pred CccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc---cCCccc
Q 013632 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE---LLPSAY 139 (439)
Q Consensus 63 ~v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~---~~~~~l 139 (439)
.+..+.+...|+.|.+.|+|...... +-..+ .-=++.+-|.+|.+.|.+=. .-...|
T Consensus 50 ~~~~i~~~~~g~~vti~g~V~~~~~~---------------~~~~~-----~~l~v~~~d~~~~l~l~fFn~~~~l~~~~ 109 (677)
T COG1200 50 LLPGIAEARPGEIVTIEGTVLSHEKF---------------PFGKR-----KLLKVTLSDGTGVLTLVFFNFPAYLKKKL 109 (677)
T ss_pred ccCChhhcCCCceEEEEEEEEeeecc---------------CCCCC-----ceEEEEEecCcEEEEEEEECccHHHHhhC
Confidence 34567778889999999999865211 00111 12279999999999998632 234778
Q ss_pred ccCeEEEEEeEEcC
Q 013632 140 VTGIVVALHGKETS 153 (439)
Q Consensus 140 vtG~Vvav~G~~~~ 153 (439)
-.|..+.+.|++..
T Consensus 110 ~~G~~v~v~Gk~~~ 123 (677)
T COG1200 110 KVGERVIVYGKVKR 123 (677)
T ss_pred CCCCEEEEEEEEee
Confidence 89999999999863
No 153
>PLN02903 aminoacyl-tRNA ligase
Probab=21.26 E-value=3.9e+02 Score=30.03 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=46.6
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccC-------C
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL-------P 136 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~-------~ 136 (439)
+..|..-..|+++.|-|-|... +.+ ++=--+.|-|.+|.+.+..+.-. .
T Consensus 63 cg~l~~~~~gk~V~l~GWV~~~------------R~~------------G~l~FidLRD~~G~iQvV~~~~~~~~~~~~~ 118 (652)
T PLN02903 63 CGALSVNDVGSRVTLCGWVDLH------------RDM------------GGLTFLDVRDHTGIVQVVTLPDEFPEAHRTA 118 (652)
T ss_pred hhhcchhhCCCEEEEEEEEEEE------------ecC------------CCcEEEEEEcCCccEEEEEeCCccHHHHHHH
Confidence 4555555568899999999875 111 11236889999999999875311 1
Q ss_pred cccccCeEEEEEeEEcC
Q 013632 137 SAYVTGIVVALHGKETS 153 (439)
Q Consensus 137 ~~lvtG~Vvav~G~~~~ 153 (439)
..|-.|.||.|.|++..
T Consensus 119 ~~L~~esvV~V~G~V~~ 135 (652)
T PLN02903 119 NRLRNEYVVAVEGTVRS 135 (652)
T ss_pred hcCCCCCEEEEEEEEEe
Confidence 45788999999998863
No 154
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.52 E-value=1.2e+02 Score=33.52 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=42.2
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCce-EEEee--cccCCccccc
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR-VKLGG--AELLPSAYVT 141 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgR-V~L~~--~~~~~~~lvt 141 (439)
..|.....+..+-|||.|....+++ ++... ...-...-..+.|.|++|+ |+|.+ +.......-.
T Consensus 302 ~dI~~~~~~~~VDVIGvV~~v~~~~-----~i~~k--------~~g~~~~kR~i~L~D~sg~sI~vTLWG~~A~~~~~~~ 368 (608)
T TIGR00617 302 DDIGGYEGNSLVDVIGIVQSVSPTQ-----TITSR--------KNNKEFPKRDITLVDDSGKSVRVTLWGDDATKFDVSV 368 (608)
T ss_pred HHhhhhcCCCCccEEEEEeEecCce-----EEEEc--------CCCCeeeeEEEEEEeCCCCEEEEEEEhhhhhhcCCCC
Confidence 3444444455677999998753211 11100 0000012347999999994 77764 4222233557
Q ss_pred CeEEEEEeEEc
Q 013632 142 GIVVALHGKET 152 (439)
Q Consensus 142 G~Vvav~G~~~ 152 (439)
|.|||++|...
T Consensus 369 ~~Vva~kg~~V 379 (608)
T TIGR00617 369 QPVIAIKGVRV 379 (608)
T ss_pred CCEEEEEeEEE
Confidence 89999999754
No 155
>PRK07218 replication factor A; Provisional
Probab=20.37 E-value=3.6e+02 Score=28.57 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=51.1
Q ss_pred CccceecccC-CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCccccc
Q 013632 63 PICTVLELEE-GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVT 141 (439)
Q Consensus 63 ~v~~l~~~~~-~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvt 141 (439)
+..+|.|+++ ++.+-|.|.|....+ | + +.++.. ... =-.+.|-|+||+|++..= +...|-.
T Consensus 57 ~~~kI~Di~~~~~~V~v~~kVl~i~~-r-t----~r~dg~------~g~----v~~~~igDeTG~Ir~tlW--~~~~l~~ 118 (423)
T PRK07218 57 SSKDIKELSTDDKNVTVTGRVLTIGE-R-S----IRYQGD------DHV----IYEGILADETGTISYTAW--KDFGLSP 118 (423)
T ss_pred CCccHhhCCCCCceeEEEEEEEEecc-e-e----EecCCC------ceE----EEEEEEECCCCeEEEEEE--CCCCCCC
Confidence 4678889875 567889999987643 2 2 111110 001 126899999999999873 2334889
Q ss_pred CeEEEEEeEEcC--CCcEEE
Q 013632 142 GIVVALHGKETS--AGEFLV 159 (439)
Q Consensus 142 G~Vvav~G~~~~--~g~F~V 159 (439)
|.++=+.+-+.. +|.+.+
T Consensus 119 Gdvv~I~na~vre~~g~~el 138 (423)
T PRK07218 119 GDTVTIGNAGVREWDGRPEL 138 (423)
T ss_pred CCEEEEeccEeeccCCceEE
Confidence 999999985543 344444
No 156
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=20.07 E-value=1.8e+02 Score=30.87 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=54.5
Q ss_pred HhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHh
Q 013632 256 EPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQ 335 (439)
Q Consensus 256 ~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~ 335 (439)
.+|+.+|.++..-++ +++++=|.+||+... +|+ +.+. .-|=+.+...| |.||-+|..|
T Consensus 338 ~am~dI~~Wvr~~~~--rmlFVYG~nDPW~A~----~f~--l~~g---------~~ds~v~~~Pg----gnHga~I~~L- 395 (448)
T PF05576_consen 338 TAMRDIDRWVRNNGP--RMLFVYGENDPWSAE----PFR--LGKG---------KRDSYVFTAPG----GNHGARIAGL- 395 (448)
T ss_pred HHHHHHHHHHHhCCC--eEEEEeCCCCCcccC----ccc--cCCC---------CcceEEEEcCC----CcccccccCC-
Confidence 579999999998655 899999999999741 221 1111 11223333322 4566666554
Q ss_pred hccCcCCHHHHHHHHHhccccccCCCC
Q 013632 336 KYSEANDQLEFMERTLRWRHLAPTAPN 362 (439)
Q Consensus 336 k~~~~~~~l~~~~~~L~~rHlaPt~Pd 362 (439)
+...+..++..+.+|.-++|.+..
T Consensus 396 ---~~~~r~~a~a~l~~WaGv~~~~~~ 419 (448)
T PF05576_consen 396 ---PEAERAEATARLRRWAGVAPAAVQ 419 (448)
T ss_pred ---CHHHHHHHHHHHHHHcCCCccccc
Confidence 234567899999999999998643
Done!