Query 013632
Match_columns 439
No_of_seqs 132 out of 482
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:12:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0j_A DNA polymerase subunit 100.0 1E-124 5E-129 973.3 32.7 426 7-436 28-461 (476)
2 3flo_A DNA polymerase alpha su 100.0 7E-35 2.4E-39 301.0 32.0 348 34-426 10-427 (460)
3 2yvt_A Hypothetical protein AQ 98.6 2.2E-07 7.7E-12 87.9 11.7 217 180-433 5-258 (260)
4 3ib7_A ICC protein; metallopho 98.6 1.2E-06 4E-11 85.6 16.0 208 179-428 24-270 (330)
5 1z2w_A Vacuolar protein sortin 98.2 3.5E-05 1.2E-09 70.2 16.0 150 181-428 11-169 (192)
6 1s3l_A Hypothetical protein MJ 98.2 2.5E-05 8.7E-10 71.4 14.5 160 181-433 26-189 (190)
7 2a22_A Vacuolar protein sortin 98.1 0.00011 3.6E-09 68.4 17.7 160 180-428 25-193 (215)
8 2nxf_A Putative dimetal phosph 98.1 3.3E-05 1.1E-09 74.3 13.5 225 179-435 4-312 (322)
9 1uf3_A Hypothetical protein TT 98.1 3.9E-05 1.3E-09 70.4 13.2 202 180-434 5-227 (228)
10 3tho_B Exonuclease, putative; 98.1 2.2E-05 7.4E-10 79.5 12.0 82 182-284 2-91 (379)
11 3av0_A DNA double-strand break 98.1 0.00018 6.1E-09 72.8 18.8 82 179-285 19-109 (386)
12 1nnw_A Hypothetical protein; s 98.0 7.7E-05 2.6E-09 70.3 14.0 196 182-435 3-223 (252)
13 1su1_A Hypothetical protein YF 98.0 0.00037 1.3E-08 64.4 17.6 165 181-434 26-195 (208)
14 2kkn_A Uncharacterized protein 97.9 0.00039 1.3E-08 62.8 16.4 149 181-429 23-171 (178)
15 2xmo_A LMO2642 protein; phosph 97.8 0.00043 1.5E-08 70.7 17.1 220 179-426 38-320 (443)
16 3ck2_A Conserved uncharacteriz 97.7 0.0016 5.3E-08 58.2 17.2 142 181-428 7-154 (176)
17 2q8u_A Exonuclease, putative; 97.7 7.3E-05 2.5E-09 74.0 7.8 117 179-327 17-150 (336)
18 1ii7_A MRE11 nuclease; RAD50, 97.6 0.00015 5.1E-09 71.7 8.8 78 182-284 2-88 (333)
19 3rl5_A Metallophosphoesterase 97.6 0.0026 9E-08 62.2 17.5 196 179-426 58-292 (296)
20 3qfm_A SAPH, putative uncharac 97.5 0.00059 2E-08 65.7 11.7 183 179-427 10-219 (270)
21 3t1i_A Double-strand break rep 97.5 0.00032 1.1E-08 72.3 9.4 82 179-285 31-153 (431)
22 1xm7_A Hypothetical protein AQ 97.3 0.00035 1.2E-08 63.5 6.9 106 182-331 3-117 (195)
23 3d03_A Phosphohydrolase; glyce 97.3 0.00053 1.8E-08 64.6 8.2 181 182-397 2-204 (274)
24 4fbw_A DNA repair protein RAD3 97.2 0.00056 1.9E-08 70.1 7.8 48 179-237 12-66 (417)
25 4fbk_A DNA repair and telomere 97.2 0.00058 2E-08 70.9 7.9 48 179-237 75-129 (472)
26 1xzw_A Purple acid phosphatase 95.9 0.094 3.2E-06 53.2 13.9 142 179-353 125-271 (426)
27 1ute_A Protein (II purple acid 93.9 0.038 1.3E-06 52.4 4.0 90 179-285 5-96 (313)
28 3rqz_A Metallophosphoesterase; 92.5 0.13 4.5E-06 48.0 5.4 66 180-284 3-68 (246)
29 3dm3_A Replication factor A; p 92.0 0.41 1.4E-05 39.3 7.1 70 65-153 6-81 (105)
30 2qfp_A Purple acid phosphatase 91.9 0.45 1.5E-05 48.0 8.9 142 179-353 118-264 (424)
31 2qjc_A Diadenosine tetraphosph 91.3 0.2 6.9E-06 47.5 5.2 68 180-284 18-85 (262)
32 1g5b_A Serine/threonine protei 91.2 0.15 5E-06 46.8 4.0 68 180-284 12-79 (221)
33 2k50_A Replication factor A re 91.0 1.1 3.9E-05 36.7 8.9 75 64-152 7-84 (115)
34 2kbn_A Conserved protein; nucl 90.4 1.1 3.8E-05 36.8 8.2 76 63-159 4-83 (109)
35 3e0e_A Replication protein A; 90.3 0.67 2.3E-05 37.2 6.7 73 66-152 4-77 (97)
36 1o7i_A SSB, SSO2364, single st 89.4 1.5 5.3E-05 36.3 8.5 79 65-158 3-84 (119)
37 1nnx_A Protein YGIW; structura 87.7 1.3 4.4E-05 36.7 6.7 73 63-162 27-104 (109)
38 2kct_A Cytochrome C-type bioge 85.9 2.4 8.3E-05 34.0 7.2 48 116-163 31-82 (94)
39 2k75_A Uncharacterized protein 84.8 2.6 9E-05 34.3 7.2 76 65-159 4-82 (106)
40 2dfj_A Diadenosinetetraphospha 83.7 1.4 4.9E-05 42.1 5.9 68 182-284 2-69 (280)
41 1j6q_A Cytochrome C maturation 80.1 5.4 0.00018 34.2 7.5 72 72-163 31-103 (136)
42 1wao_1 Serine/threonine protei 79.7 5.7 0.0002 40.4 9.1 57 379-436 396-456 (477)
43 3tgh_A Glideosome-associated p 78.4 0.87 3E-05 45.1 2.3 83 180-285 3-87 (342)
44 1sr3_A APO-CCME; OB fold, beta 77.0 3.1 0.00011 35.7 5.1 72 72-163 27-98 (136)
45 2ie4_C PP2A-alpha;, serine/thr 76.3 7.2 0.00025 37.9 8.2 54 382-436 235-291 (309)
46 1fjm_A Protein serine/threonin 68.7 12 0.00042 36.6 7.8 52 382-436 242-298 (330)
47 4gop_B Putative uncharacterize 68.0 13 0.00043 31.4 6.8 59 74-156 37-103 (136)
48 2z72_A Protein-tyrosine-phosph 67.3 9.4 0.00032 37.4 6.7 83 180-284 70-153 (342)
49 3kdf_D Replication protein A 3 65.2 13 0.00044 31.1 6.3 61 74-158 32-100 (132)
50 1aui_A Calcineurin, serine/thr 61.7 21 0.00073 37.2 8.3 71 181-284 83-154 (521)
51 3h63_A Serine/threonine-protei 56.4 46 0.0016 32.3 9.3 53 382-436 246-303 (315)
52 4gop_A Putative uncharacterize 55.8 38 0.0013 27.8 7.4 54 71-154 16-70 (114)
53 1e1o_A Lysyl-tRNA synthetase, 55.3 47 0.0016 34.4 9.7 67 73-163 64-143 (504)
54 4ex5_A Lysine--tRNA ligase; st 54.3 43 0.0015 34.9 9.2 102 37-164 37-165 (529)
55 3kdf_A Replication protein A 1 51.3 1E+02 0.0035 25.4 10.8 91 68-211 17-109 (121)
56 2pi2_E Replication protein A 1 48.3 1.3E+02 0.0044 25.7 10.7 68 68-163 38-106 (142)
57 3au7_A TIAS, putative uncharac 48.1 38 0.0013 34.1 7.3 78 65-165 276-359 (402)
58 2pi2_A Replication protein A 3 46.2 54 0.0018 30.9 7.8 43 117-159 91-141 (270)
59 3nem_A Aspartyl-tRNA synthetas 44.9 57 0.0019 33.1 8.2 76 64-163 7-96 (438)
60 2hpi_A DNA polymerase III alph 42.4 45 0.0015 38.4 7.6 75 70-163 1039-1119(1220)
61 3bju_A Lysyl-tRNA synthetase; 42.3 95 0.0032 32.2 9.6 68 73-163 55-136 (521)
62 1jmc_A Protein (replication pr 42.0 19 0.00064 33.1 3.8 77 63-152 128-207 (246)
63 3icf_A PPT, serine/threonine-p 41.8 1.2E+02 0.0042 29.5 9.8 53 382-436 250-317 (335)
64 1n9w_A Aspartyl-tRNA synthetas 33.6 81 0.0028 31.7 7.2 55 72-153 12-67 (422)
65 3a74_A Lysyl-tRNA synthetase; 33.1 99 0.0034 31.8 7.9 67 73-163 56-134 (493)
66 3e7a_A PP-1A, serine/threonine 32.9 1.2E+02 0.0042 29.0 8.1 53 382-436 241-297 (299)
67 2xgt_A Asparaginyl-tRNA synthe 31.7 1.3E+02 0.0044 30.3 8.4 59 72-153 10-73 (435)
68 2z1a_A 5'-nucleotidase; metal- 31.4 84 0.0029 32.5 7.1 80 179-284 28-119 (552)
69 3ll8_A Serine/threonine-protei 29.3 1.6E+02 0.0056 28.9 8.4 71 181-284 70-141 (357)
70 1l0w_A Aspartyl-tRNA synthetas 29.3 1.9E+02 0.0065 30.4 9.4 65 65-153 8-77 (580)
71 4gop_C Putative uncharacterize 29.1 53 0.0018 33.1 5.0 77 63-152 123-206 (444)
72 1wyd_A Hypothetical aspartyl-t 28.9 1.8E+02 0.0062 29.2 8.9 75 65-163 8-93 (429)
73 1eov_A ASPRS, aspartyl-tRNA sy 28.8 1.8E+02 0.0062 29.8 9.0 66 64-153 26-104 (487)
74 1c0a_A Aspartyl tRNA synthetas 26.7 1.5E+02 0.0051 31.2 8.0 63 66-152 8-76 (585)
75 3kf8_A Protein STN1; OB fold; 26.5 3.1E+02 0.011 25.0 9.1 49 116-164 112-181 (220)
76 3m4p_A Ehasnrs, asparaginyl-tR 26.3 1.6E+02 0.0056 29.8 8.1 58 72-152 29-92 (456)
77 4ah6_A Aspartate--tRNA ligase, 23.9 2.4E+02 0.0083 29.8 9.0 62 64-152 15-84 (617)
78 1wjj_A Hypothetical protein F2 23.5 87 0.003 26.8 4.5 82 64-152 16-100 (145)
79 1hp1_A 5'-nucleotidase; metall 23.4 1.5E+02 0.0051 30.2 7.2 82 180-284 8-95 (516)
80 1x54_A Asparaginyl-tRNA synthe 23.1 1.5E+02 0.0053 29.8 7.1 66 64-153 7-80 (434)
81 3i7f_A Aspartyl-tRNA synthetas 23.0 2E+02 0.0068 30.1 8.0 66 64-153 53-127 (548)
82 3qfk_A Uncharacterized protein 22.8 2.9E+02 0.0098 28.2 9.3 51 179-237 18-77 (527)
83 3kf6_A Protein STN1; OB fold, 21.2 3.1E+02 0.01 23.6 7.7 48 117-164 67-125 (159)
No 1
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-124 Score=973.32 Aligned_cols=426 Identities=45% Similarity=0.752 Sum_probs=358.1
Q ss_pred ccccccce-eeeccCCCCceecCCCCCchhhHHHHHHHHHHHHHHHHccccCCCCC-CCccceecccCCCeEEEEEEEEe
Q 013632 7 EARLQRKQ-ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPH-LPICTVLELEEGRECVIIGTLYK 84 (439)
Q Consensus 7 ~~~~~r~~-~~y~~~~~~f~l~~~~y~~~Qy~~iY~~Rl~~lr~~l~~~a~~k~~~-~~v~~l~~~~~~~~~~viGtl~k 84 (439)
...++|.. +.|++++++|.+.+|+| ++||++||++||++||+++.++|++||++ .++.+|+++++|++|+|||||||
T Consensus 28 ~~~~~R~~~~~y~~~~~~F~l~~~~y-~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~~~~i~klldl~~ge~c~viGTvyk 106 (476)
T 3e0j_A 28 NATFARVPVATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFK 106 (476)
T ss_dssp CCCEECCCTTCEEECCGGGCC-------------CHHHHHHHHHHHHHHHHHHSCSCCCBCCSSSCCTTCCEEEEEEEEE
T ss_pred ccccccccCccccccccccccCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHhhcccCCCEEEEEEEEEe
Confidence 34789999 99999999999999999 99999999999999999999999999994 89999999999999999999999
Q ss_pred cCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEee
Q 013632 85 HMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLD 164 (439)
Q Consensus 85 ~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~~ 164 (439)
+|+||||||+||++|+++.+++++.+|++++|+++|||++|||+|.| .++...||||+||||+|+++++|.|+|+||+|
T Consensus 107 ~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDesGRv~L~g-~~~~~~lVTG~VvaV~G~~~~~G~F~V~di~~ 185 (476)
T 3e0j_A 107 AMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKG-TIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCF 185 (476)
T ss_dssp EC----------------------CCCCCSSCEEEEECSSCEEEEEE-SCCTTTCCTTCEEEEEEEECTTSSEEEEEEEE
T ss_pred cccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECCCCEEEEEE-EcccccccCCcEEEEEEEEcCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999 46889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCC-ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCC
Q 013632 165 AGLAPQKELPLNSGEDKYVVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNG 243 (439)
Q Consensus 165 P~~~~~~~~~~~~~~~~~i~~vSgl~lgs~~~-~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~ 243 (439)
|++|||++++... ++.|||||||||+|++++ +.++|++|+|||+|++|++++++.+++|+|||||||++++. +....
T Consensus 186 Pd~ppq~~~~~~~-~~~~ialVSGL~igs~~~~~~~~~~ll~d~L~G~~g~~~~~~~as~I~rlIIAGn~v~~~-~~~~e 263 (476)
T 3e0j_A 186 ADLAPQKPAPPLD-TDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHS-TQSRD 263 (476)
T ss_dssp CBCCCCCCCCCCS-SCCEEEEECCCCBTSSCHHHHHHHHHHHHHHHTCSSCHHHHHHHTTEEEEEEESCSBCC-------
T ss_pred CCCCCCCCCCcCC-CCCEEEEECCcccCCCcccchHHHHHHHHHHcCCCCCccccchhhceeEEEEECCccccc-cccch
Confidence 9999998877555 789999999999999864 48899999999999999999899999999999999999874 21110
Q ss_pred Cc-----ccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEe
Q 013632 244 QN-----LASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFEL 318 (439)
Q Consensus 244 ~~-----~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i 318 (439)
.. ...+......+++++||+||++|+++|+|+||||+|||++.+|||||||+|+||++++|++++++||||+|++
T Consensus 264 ~~~~~~y~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~lmPG~~DP~~~~lPQqplh~~lfp~s~~~~~~~~vtNP~~~~i 343 (476)
T 3e0j_A 264 SINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATI 343 (476)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEECCTTSSSCSSSSCCCCCTTSCHHHHTSTTEEECCSSEEEEE
T ss_pred hhhhhhccccccchhhHHHHHHHHHHHHhcccCceEEecCCCCCcccccCCCCCcCHHHhhhhhhcCccEEeCCCeEEEE
Confidence 00 0112233456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCChHHHhhccCcCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEe
Q 013632 319 DNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLK 398 (439)
Q Consensus 319 ~g~~~l~~sGq~i~di~k~~~~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~ 398 (439)
+|++|||||||||+||+||++.++++++|+.+|+|||+|||||||||||||.++|||||+++|||||+||||+|++++++
T Consensus 344 ~G~~~LgtsGqnidDi~ky~~~~~~l~~me~~LkwrHlAPTaPdTl~~yP~~~~DpfVi~~~PhVyf~Gnq~~f~t~~~~ 423 (476)
T 3e0j_A 344 DGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIR 423 (476)
T ss_dssp TTEEEEECSSHHHHHHHHHSCCCCHHHHHHHHHHBTCSCTTSCCC------CCSCTTSCSSCCSEEEEEEESSCEEEEEE
T ss_pred CCEEEEEECCCCHHHHHhcCCCCCHHHHHHHHHHHhccCCCCCCceeeccCCCCCceeecCCCcEEEeCCCCccceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEeee
Q 013632 399 GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGT 436 (439)
Q Consensus 399 ~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f~~ 436 (439)
++++++|||||||+|++||++|||||+||+|++|+|+.
T Consensus 424 ~~~~~~vrLv~VP~Fs~T~~~vLvdl~tLe~~~v~f~~ 461 (476)
T 3e0j_A 424 GPEDQTVLLVTVPDFSATQTACLVNLRSLACQPISFSG 461 (476)
T ss_dssp CSSCCEEEEEEEECHHHHCEEEEEETTTTBCCEEEEEE
T ss_pred cCCCCeEEEEEcCCcCCCCeEEEEECccccEEEEEEec
Confidence 98899999999999999999999999999999999986
No 2
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=301.05 Aligned_cols=348 Identities=17% Similarity=0.234 Sum_probs=255.8
Q ss_pred hhhHHHHHHHHHHHHHHHHccccCCCCCCCccceec--ccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCC
Q 013632 34 QQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLE--LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNF 111 (439)
Q Consensus 34 ~Qy~~iY~~Rl~~lr~~l~~~a~~k~~~~~v~~l~~--~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y 111 (439)
.+-+.+-.+|++.+...+.++-.-. + ....+ ++.+++++++|+|.++... .| ++.
T Consensus 10 ~e~~~vLd~~I~~~~~~~~~~~~~~--~---~~f~~p~~~sq~~v~~vGRI~~Ds~~---------~e---------gkL 66 (460)
T 3flo_A 10 QEASDVLDDQIESFTKIIQNHYKLS--P---NDFADPTIQSQSEIYAVGRIVPDSPT---------YD---------KFL 66 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC--G---GGBCCTTSCCSSCEEEEEEEEESSSS---------CC---------SCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC--c---cccCCcccCccccEEEEEEEeeCCCC---------CC---------CCc
Confidence 4566788889999999988863110 0 01223 3467899999999998410 01 122
Q ss_pred CCCCceEEEecC-----CceEEEeecccCCcccccCeEEEEEeEEcCCCcEEEEEEeeCCCCCCCC-CCC--------CC
Q 013632 112 MHPDDHLVLEDE-----SGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKE-LPL--------NS 177 (439)
Q Consensus 112 ~~~~d~l~LED~-----sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~~g~F~V~di~~P~~~~~~~-~~~--------~~ 177 (439)
++.++.||-. +.||+|+.+.+....|++|+|||++|+...++.|.|++|+-+..++.+. .+. ..
T Consensus 67 --n~~Sl~LE~sr~~g~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~~P~~~~p~s~~~~l~~~~~~~~ 144 (460)
T 3flo_A 67 --NPESLSLETSRMGGVGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLE 144 (460)
T ss_dssp --CTTSEEEECCHHHHTTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECCCCCCCCCEEEHHHHHHHHHHHT
T ss_pred --chhheEEEeccccCCCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeeccCCCCCCCCCCHHHhhhhhhhcc
Confidence 4679999975 6899999999999999999999999997666679999998433322111 100 01
Q ss_pred CCCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCC-C-------CCCCccccc
Q 013632 178 GEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG-L-------LNGQNLASK 249 (439)
Q Consensus 178 ~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~-~-------~~~~~~~~~ 249 (439)
+....|+++||++..+++.....|+.|++|++.. .+++.||++|+|+|..+. + ++++.....
T Consensus 145 ~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~----------~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~~~~~~ 214 (460)
T 3flo_A 145 GSSLKVIVTCGPYFANDNFSLELLQEFIDSINNE----------VKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPK 214 (460)
T ss_dssp SSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCC----------CCCSEEEEESCSSBTTCHHHHHTCCCCCTTCSSCCS
T ss_pred CCCcEEEEEeCCccCCCccChHHHHHHHHHHHhc----------cCCCEEEEecCcccccCcccccCccccccccccccc
Confidence 2568899999999999888778888888886531 368999999999998653 1 112111112
Q ss_pred chhhhhHhHH-HHHHHHHhhcCCCcEEEcCCCCCCC--CCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEe
Q 013632 250 DQSRLFEPIK-ELDILLTQIAAGVPLDIMPGPNDPA--NFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGT 326 (439)
Q Consensus 250 ~~~~~~~~~~-~ld~~L~~l~~~i~V~imPG~~Dp~--~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~ 326 (439)
++. +.++ .+..+|+++.++++|+++||++|++ ..++|||||+++.+...+ .++++++|||+|++||+.|.++
T Consensus 215 t~~---~lF~~~i~~il~~l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~k~l~l~k--~nv~~~sNPc~~~in~v~igvs 289 (460)
T 3flo_A 215 TLD---ELFLKLFTPILKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPK--RNFKCMANPSSFQINEIYFGCS 289 (460)
T ss_dssp SHH---HHHHHHTHHHHTTSCTTSEEEEECCTTBTTCSCCSBSBCCCCTTTTTCCT--TTEEECCBSEEEEETTEEEEEC
T ss_pred CHH---HHHHHHHHHHHHhccCCCEEEEeCCcccccCCCCCcCCCCCChhhhcCCc--ccEEEeCCCEEEEECCEEEEEE
Confidence 223 3343 3577888888899999999999998 479999999987654221 2899999999999999999999
Q ss_pred cCCChHHHhhccC-----cCCH-HHHHHHHHhccccccCCCCCcccCC----C---------CC-------------CC-
Q 013632 327 SGQTIDDLQKYSE-----ANDQ-LEFMERTLRWRHLAPTAPNTLGCYP----F---------TD-------------RD- 373 (439)
Q Consensus 327 sGq~i~di~k~~~-----~~~~-l~~~~~~L~~rHlaPt~Pdtl~~~P----~---------~~-------------~D- 373 (439)
+.+.+.+|..... ..++ -++++++|+|||+||++|...+... + .. -|
T Consensus 290 s~Dil~~L~e~~~~~~~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Ldv 369 (460)
T 3flo_A 290 NVDTFKDLKEVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKETNDMESKEEKVYEHISGADLDV 369 (460)
T ss_dssp CSCHHHHCCCEEECHHHHHSCHHHHHHHHHHHHTBSCCCSSCCEEC-------------------------CCEECCBCG
T ss_pred cHHHHHHHHHhhcCCCCccccHHHHHHHHHhhcCcccCcCCCcccccccccccccccccccccccccccccccCCcccce
Confidence 9999999964332 2455 4699999999999999999876532 0 00 01
Q ss_pred -C-----eeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC----CCeEEEEECCC
Q 013632 374 -P-----FLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE----TGVAVVVNLKN 426 (439)
Q Consensus 374 -p-----fvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~----t~~~vlvnl~t 426 (439)
. |+.+..|||+++....+..++.+ ++|.+|+...|++ +||-+-+.++-
T Consensus 370 ~yl~l~e~~~~~~PDilI~PS~l~~F~kvv-----~~~v~INPG~l~k~~~g~GTya~l~i~~ 427 (460)
T 3flo_A 370 SYLGLTEFVGGFSPDIMIIPSELQHFARVV-----QNVVVINPGRFIRATGNRGSYAQITVQC 427 (460)
T ss_dssp GGGGGGBCGGGCCCSEEECCCSSCCEEEEE-----TTEEEEECCCSBCTTSCBCEEEEEEECC
T ss_pred eccchhhcccCCCCCEEEcCCCCcCceEEe-----CCEEEECcccccCCCCCCceeEEEEEeC
Confidence 1 22367899999999999999988 5789999999988 58888877654
No 3
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=98.60 E-value=2.2e-07 Score=87.87 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=114.4
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCC-----------CCCCCcccc
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRG-----------LLNGQNLAS 248 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~-----------~~~~~~~~~ 248 (439)
.-+|+++||+|.+. ..++.+++.+.. .+++.||++||+++.... -+|..
T Consensus 5 ~mri~~iSDlH~~~-----~~~~~~l~~~~~-----------~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~---- 64 (260)
T 2yvt_A 5 PRKVLAIKNFKERF-----DLLPKLKGVIAE-----------KQPDILVVVGNILKNEALEKEYERAHLARREPNR---- 64 (260)
T ss_dssp CCEEEEEECCTTCG-----GGHHHHHHHHHH-----------HCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCT----
T ss_pred eEEEEEEeecCCCh-----HHHHHHHHHHHh-----------cCCCEEEECCCCCCccCcchhhhhhhhhhcccch----
Confidence 35799999999964 356777777642 357999999999875211 00000
Q ss_pred cchhhhhH-hHHHHHHHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEe
Q 013632 249 KDQSRLFE-PIKELDILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGT 326 (439)
Q Consensus 249 ~~~~~~~~-~~~~ld~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~ 326 (439)
....+..+ ..+.+..++..+.. .++|.++|||||..... .+ ...+.....+.++....|...+.++|+.|++.
T Consensus 65 ~~~~~~~~~~~~~~~~~l~~l~~~~~pv~~v~GNHD~~~~~----~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~ 139 (260)
T 2yvt_A 65 KVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKI----FL-RAAYEAETAYPNIRVLHEGFAGWRGEFEVIGF 139 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSCCHHH----HH-HHHHHTTTTCTTEEECSSEEEEETTTEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCCCchhhh----hH-HHHhhhccCCcceEEecCcceEEECCEEEEec
Confidence 00000000 01446667777755 57999999999975310 00 01222222223455665655588999999998
Q ss_pred cCCChHHHhhccCcCCHH--------HHHHHHHhc---------cccccCCCCCcccCC----CCCCC---CeeecCCCc
Q 013632 327 SGQTIDDLQKYSEANDQL--------EFMERTLRW---------RHLAPTAPNTLGCYP----FTDRD---PFLVESCPH 382 (439)
Q Consensus 327 sGq~i~di~k~~~~~~~l--------~~~~~~L~~---------rHlaPt~Pdtl~~~P----~~~~D---pfvi~~~P~ 382 (439)
.+..... .+.. +... +.+ ..++. -|-.|..+ .+...| ....+ .++-..-|+
T Consensus 140 ~~~~~~~--~~~~-~~~~~~~~~~~~~~l-~~l~~~~~~~~Il~~H~pp~~~-~~d~~~~~~~~~~~~~l~~~~~~~~~~ 214 (260)
T 2yvt_A 140 GGLLTEH--EFEE-DFVLKYPRWYVEYIL-KFVNELKPRRLVTIFYTPPIGE-FVDRTPEDPKHHGSAVVNTIIKSLNPE 214 (260)
T ss_dssp CSEEESS--CCBS-SSSCEEEHHHHHHHG-GGGGGSCCCEEEEEESSCCSCS-STTCBTTBSCCCSCHHHHHHHHHHCCS
T ss_pred CCCcCCC--CcCH-HHHhhcchhhHHHHH-HHHHhcCCCCEEEEECCCcccc-ccccCcccccccCcHHHHHHHHHhCCC
Confidence 6532111 1110 0000 111 11111 13222211 010000 00000 011123689
Q ss_pred EEEeCCcCccceEEEecCCCCcEEEEecCCCCCCCeEEEEECCCCCEEEEE
Q 013632 383 VYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLS 433 (439)
Q Consensus 383 V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~ 433 (439)
+.++||.| .+...+ .++.+++..+... |+..++++.+-+++..+
T Consensus 215 ~vl~GH~H-~~~~~~-----~~~~~in~Gs~~~-g~~~ii~~~~~~~~~~~ 258 (260)
T 2yvt_A 215 VAIVGHVG-KGHELV-----GNTIVVNPGEFEE-GRYAFLDLTQHKIKLEQ 258 (260)
T ss_dssp EEEECSSC-CEEEEE-----TTEEEEECCBGGG-TEEEEEETTTTEEEEEE
T ss_pred EEEECCcc-CCcEEe-----CCEEEEeCCCCCC-CceEEEEEcCCEEEeee
Confidence 99999999 444333 2466888777765 79999999886655443
No 4
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=98.57 E-value=1.2e-06 Score=85.64 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=115.4
Q ss_pred CCeEEEEEecCCCCCCCC-------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccch
Q 013632 179 EDKYVVLVSGLNVGSGTS-------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~-------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~ 251 (439)
..-+|+++||+|++.... ....++.+++.+... ..+++.||++||+++...
T Consensus 24 ~~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~---------~~~~d~vi~~GDl~~~~~------------- 81 (330)
T 3ib7_A 24 PDYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQS---------GLRPDAIVFTGDLADKGE------------- 81 (330)
T ss_dssp CSEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHH---------TCCCSEEEECSCCBTTCC-------------
T ss_pred CCeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhc---------CCCCCEEEECCCCCCCCC-------------
Confidence 467899999999975431 244677777776531 246899999999986521
Q ss_pred hhhhHhHHHHHHHHHhhcC--CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCC
Q 013632 252 SRLFEPIKELDILLTQIAA--GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQ 329 (439)
Q Consensus 252 ~~~~~~~~~ld~~L~~l~~--~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq 329 (439)
.+.++.+.+++..+.. .+++.++|||||... .+...+.... .....-.+.+.++|++|++..+.
T Consensus 82 ---~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~lds~ 147 (330)
T 3ib7_A 82 ---PAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRA------ELRKFLLDEA-----PSMAPLDRVCMIDGLRIIVLDTS 147 (330)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCEEEECCCTTSCHH------HHHHHHHCCC-----CCCSCCCEEEEETTEEEEECCCC
T ss_pred ---HHHHHHHHHHHHHHHhhcCCCEEEeCCCCCCHH------HHHHHhcccc-----cccCCcceEEEeCCEEEEEecCC
Confidence 1234555556655532 679999999999631 1111111111 00112335788999999998776
Q ss_pred ChHHHhhccCcCCHHHHHHHHHhcc---------ccccCCCCCccc--CCCCCCCCe--eec-CCCcEEEeCCcCccceE
Q 013632 330 TIDDLQKYSEANDQLEFMERTLRWR---------HLAPTAPNTLGC--YPFTDRDPF--LVE-SCPHVYFAGNQQKFETR 395 (439)
Q Consensus 330 ~i~di~k~~~~~~~l~~~~~~L~~r---------HlaPt~Pdtl~~--~P~~~~Dpf--vi~-~~P~V~~~Gn~~~f~~~ 395 (439)
....-... .....++.++..|... |-.|.....-+. +.....+-| ++. .-.+++++||.|.....
T Consensus 148 ~~~~~~~~-~~~~q~~wl~~~l~~~~~~~~iv~~Hh~p~~~~~~~~~~~~~~~~~~l~~~l~~~~v~~v~~GH~H~~~~~ 226 (330)
T 3ib7_A 148 VPGHHHGE-IRASQLGWLAEELATPAPDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNA 226 (330)
T ss_dssp CTTCCSBC-CCHHHHHHHHHHTTSCCTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSSEEEEEECSSSSCEEE
T ss_pred CCCCCCCc-cCHHHHHHHHHHHHhcccCCeEEEEECCCCCCCccccccccccCHHHHHHHHhccCceEEEECCCCCcccc
Confidence 42110000 0233567777776543 222222111000 000000000 111 24789999999988866
Q ss_pred EEecCCCCcEEEEecCCCC----------------CCCeEEEEECCCCC
Q 013632 396 LLKGSDRQLVRLVCIPKFS----------------ETGVAVVVNLKNLE 428 (439)
Q Consensus 396 ~~~~~~~~~~~lv~vP~F~----------------~t~~~vlvnl~tl~ 428 (439)
.+. ++.+++.|+-+ ..+...+|++..-.
T Consensus 227 ~~~-----g~~~~~~gs~~~~~~~~~~~g~~~~~~~~~gy~iv~i~~~~ 270 (330)
T 3ib7_A 227 TFV-----GIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDT 270 (330)
T ss_dssp EET-----TEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSC
T ss_pred eEC-----CEEEEecCcceeccCCCCCCcceeccCCCCceEEEEEECCC
Confidence 553 45666666543 12457777776544
No 5
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.23 E-value=3.5e-05 Score=70.16 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=91.5
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
-+|+++||+|.+..... ..+.|.+.+. ..+++.+|++||+++. +.++
T Consensus 11 m~i~~iSD~H~~~~~~~--~~~~l~~~~~-----------~~~~d~ii~~GDl~~~-------------------~~~~- 57 (192)
T 1z2w_A 11 MLVLVLGDLHIPHRCNS--LPAKFKKLLV-----------PGKIQHILCTGNLCTK-------------------ESYD- 57 (192)
T ss_dssp CEEEEECCCCBTTTCSS--CCHHHHTTCC-----------TTSCSEEEECSCCBSH-------------------HHHH-
T ss_pred eEEEEEecCCCCccchh--HHHHHHHHhc-----------cCCCCEEEEcCCCCCH-------------------HHHH-
Confidence 47999999999743211 1223333321 1457999999998741 1222
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCc
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA 340 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~ 340 (439)
+|.++. .++..++||||... .+| ....++++|.+|+++||..... .
T Consensus 58 ---~l~~~~--~~~~~v~GNhD~~~-~lp----------------------~~~~~~~~~~~i~l~Hg~~~~~------~ 103 (192)
T 1z2w_A 58 ---YLKTLA--GDVHIVRGDFDENL-NYP----------------------EQKVVTVGQFKIGLIHGHQVIP------W 103 (192)
T ss_dssp ---HHHHHC--SEEEECCCTTCCCT-TSC----------------------SEEEEEETTEEEEEECSCCCCB------T
T ss_pred ---HHHhcC--CCEEEEcCCcCccc-cCC----------------------cceEEEECCEEEEEECCCcCCC------C
Confidence 234443 48999999999764 111 1245678999999999876321 0
Q ss_pred CCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC-----
Q 013632 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE----- 415 (439)
Q Consensus 341 ~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~----- 415 (439)
.+..+ +..++ -..-++++++||.|....... .++++++.++.+.
T Consensus 104 ~~~~~-l~~~~-------------------------~~~~~d~vi~GHtH~~~~~~~-----~~~~~inpGS~~~~~~~~ 152 (192)
T 1z2w_A 104 GDMAS-LALLQ-------------------------RQFDVDILISGHTHKFEAFEH-----ENKFYINPGSATGAYNAL 152 (192)
T ss_dssp TCHHH-HHHHH-------------------------HHHSSSEEECCSSCCCEEEEE-----TTEEEEECCCTTCCCCSS
T ss_pred CCHHH-HHHHH-------------------------HhcCCCEEEECCcCcCccEeE-----CCEEEEECCcccccCCCC
Confidence 11111 11111 012358899999998765433 3577888877643
Q ss_pred ----CCeEEEEECCCCC
Q 013632 416 ----TGVAVVVNLKNLE 428 (439)
Q Consensus 416 ----t~~~vlvnl~tl~ 428 (439)
.++.+++++.+-+
T Consensus 153 ~~~~~~~y~il~~~~~~ 169 (192)
T 1z2w_A 153 ETNIIPSFVLMDIQAST 169 (192)
T ss_dssp CSCCCCEEEEEEEETTE
T ss_pred CcCCCCcEEEEEEECCE
Confidence 4688999986543
No 6
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.20 E-value=2.5e-05 Score=71.43 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=102.0
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
-+|+++||+| |+ ...++.+++.+.. .+++.+|++||+++. +.++
T Consensus 26 m~i~~iSD~H-g~----~~~l~~~l~~~~~-----------~~~D~ii~~GDl~~~-------------------~~~~- 69 (190)
T 1s3l_A 26 MKIGIMSDTH-DH----LPNIRKAIEIFND-----------ENVETVIHCGDFVSL-------------------FVIK- 69 (190)
T ss_dssp CEEEEECCCT-TC----HHHHHHHHHHHHH-----------SCCSEEEECSCCCST-------------------HHHH-
T ss_pred eEEEEEeeCC-CC----HHHHHHHHHHHhh-----------cCCCEEEECCCCCCH-------------------HHHH-
Confidence 5899999999 32 4567777776642 357899999998742 1111
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCc
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA 340 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~ 340 (439)
.|.++ ..++..++||||..... +...+.+.. +.. +...|..+++++.+|+++||....
T Consensus 70 ---~l~~l--~~~~~~V~GNhD~~~~~-----~~~~~~~~~--~~~--l~~~~~~~~~~~~~ill~Hg~~~~-------- 127 (190)
T 1s3l_A 70 ---EFENL--NANIIATYGNNDGERCK-----LKEWLKDIN--EEN--IIDDFISVEIDDLKFFITHGHHQS-------- 127 (190)
T ss_dssp ---HGGGC--SSEEEEECCTTCCCHHH-----HHHHHHHHC--TTC--EEESEEEEEETTEEEEEEESCCHH--------
T ss_pred ---HHHhc--CCCEEEEeCCCcchHHH-----HHHHhcccC--hhh--hcccceEEeeCCcEEEEECCChHH--------
Confidence 22233 46899999999986321 101011100 011 345677889999999999997643
Q ss_pred CCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC----C
Q 013632 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE----T 416 (439)
Q Consensus 341 ~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~----t 416 (439)
+.+.+.+. .-++++++||.|....... .++.+++.++... .
T Consensus 128 -----l~~~~~~~-------------------------~~~d~vl~GHtH~~~~~~~-----~~~~~iNpGs~~~r~~~~ 172 (190)
T 1s3l_A 128 -----VLEMAIKS-------------------------GLYDVVIYGHTHERVFEEV-----DDVLVINPGECCGYLTGI 172 (190)
T ss_dssp -----HHHHHHHH-------------------------SCCSEEEEECSSCCEEEEE-----TTEEEEECCCSSCTTTSC
T ss_pred -----HHHHHHhc-------------------------CCCCEEEECCCCCcceEEE-----CCEEEEECCcccccCCCC
Confidence 11111000 1368999999998776544 3567888776543 4
Q ss_pred CeEEEEECCCCCEEEEE
Q 013632 417 GVAVVVNLKNLECHTLS 433 (439)
Q Consensus 417 ~~~vlvnl~tl~~~~v~ 433 (439)
++.+++++.+.+++.++
T Consensus 173 ~~y~il~~~~~~v~~~~ 189 (190)
T 1s3l_A 173 PTIGILDTEKKEYREIV 189 (190)
T ss_dssp CEEEEEETTTTEEEEEE
T ss_pred CEEEEEEcCCCcEEEEe
Confidence 79999999887666543
No 7
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.15 E-value=0.00011 Score=68.37 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=95.4
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
.-+|+++||+|.+..... ..+.|.+++. ..+++.||++||+++. +.++
T Consensus 25 ~m~i~~iSD~H~~~~~~~--l~~~l~~~~~-----------~~~~D~vi~~GDl~~~-------------------~~l~ 72 (215)
T 2a22_A 25 GDLVLLIGDLKIPYGAKE--LPSNFRELLA-----------TDKINYVLCTGNVCSQ-------------------EYVE 72 (215)
T ss_dssp CEEEEEECCCCTTTTCSS--CCGGGHHHHH-----------CTTCCEEEECSCCCCH-------------------HHHH
T ss_pred CcEEEEEecCCCCCChHH--HHHHHHHHHh-----------cCCCCEEEECCCCCCH-------------------HHHH
Confidence 468999999999753211 1123444443 1457999999998741 1222
Q ss_pred HHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccC
Q 013632 260 ELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSE 339 (439)
Q Consensus 260 ~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~ 339 (439)
+|.++. .++.+++||||.....+ . +.. +...+....++++|.+|+++||.....
T Consensus 73 ----~l~~~~--~~v~~V~GNHD~~~~~~-~----~~~---------~~~lp~~~~~~~~~~~i~l~Hg~~~~~------ 126 (215)
T 2a22_A 73 ----MLKNIT--KNVYIVSGDLDSAIFNP-D----PES---------NGVFPEYVVVQIGEFKIGLMHGNQVLP------ 126 (215)
T ss_dssp ----HHHHHC--SCEEECCCTTCCSCCBC-C----GGG---------TBCCCSEEEEEETTEEEEEECSTTSSS------
T ss_pred ----HHHHcC--CCEEEecCCCcCccccc-C----hhh---------HhhCCceEEEecCCeEEEEEcCCccCC------
Confidence 334443 48999999999864321 1 011 111222345678999999999876321
Q ss_pred cCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC----
Q 013632 340 ANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE---- 415 (439)
Q Consensus 340 ~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~---- 415 (439)
..+. +.+..+++ ..-++++++||.|....... .++++++.++.+.
T Consensus 127 ~~~~-~~l~~~~~-------------------------~~~~d~vl~GHtH~~~~~~~-----~~~~~inpGS~~~~~~~ 175 (215)
T 2a22_A 127 WDDP-GSLEQWQR-------------------------RLDCDILVTGHTHKLRVFEK-----NGKLFLNPGTATGAFSA 175 (215)
T ss_dssp TTCH-HHHHHHHH-------------------------HHTCSEEEECSSCCCEEEEE-----TTEEEEECCCSSCCCCT
T ss_pred CCCH-HHHHHHHh-------------------------hcCCCEEEECCcCCCccEee-----CCEEEEECCcccccCCC
Confidence 1111 11111110 12358999999997765433 3578888887644
Q ss_pred -----CCeEEEEECCCCC
Q 013632 416 -----TGVAVVVNLKNLE 428 (439)
Q Consensus 416 -----t~~~vlvnl~tl~ 428 (439)
.++.+++++.+.+
T Consensus 176 ~~~~~~~~y~il~i~~~~ 193 (215)
T 2a22_A 176 LTPDAPPSFMLMALQGNK 193 (215)
T ss_dssp TSTTCCCEEEEEEEETTE
T ss_pred CCCCCCCcEEEEEEeCCc
Confidence 4688999987644
No 8
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=98.09 E-value=3.3e-05 Score=74.35 Aligned_cols=225 Identities=14% Similarity=0.129 Sum_probs=115.7
Q ss_pred CCeEEEEEecCCCCCCCC-----------Ch---hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCC
Q 013632 179 EDKYVVLVSGLNVGSGTS-----------NP---LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQ 244 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~-----------~~---~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~ 244 (439)
..-+|+++||+|++.... .. ..++.+++.++. .+++.||++||+++.....
T Consensus 4 ~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~d~vi~~GD~~~~~~~~---- 68 (322)
T 2nxf_A 4 PVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR-----------ERVQCVVQLGDIIDGHNRR---- 68 (322)
T ss_dssp CSEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHH-----------TTCSEEEECSCCBCTHHHH----
T ss_pred CceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHh-----------cCCCEEEECCCccCCCCCc----
Confidence 457899999999987421 11 335555555442 4679999999998752100
Q ss_pred cccccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCC-----CcCC-Cce-eecCCcEEE
Q 013632 245 NLASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGS-----ATYN-TFR-SCTNPHCFE 317 (439)
Q Consensus 245 ~~~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~-----~~~~-~~~-~~tNP~~~~ 317 (439)
. ....+.++.+-+.|.++ .+++.++|||||..+. +...+... |... ..+. .+. .-..-+.+.
T Consensus 69 -----~-~~~~~~~~~~~~~l~~~--~~p~~~v~GNHD~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~ 137 (322)
T 2nxf_A 69 -----R-DASDRALDTVMAELDAC--SVDVHHVWGNHEFYNF--SRPSLLSS-RLNSAQRTGTDTGSDLIGDDIYAYEFS 137 (322)
T ss_dssp -----T-TCHHHHHHHHHHHHHTT--CSEEEECCCHHHHHHC--CHHHHHTS-TTCCCC------CEECGGGTCCCEEEE
T ss_pred -----c-hHHHHHHHHHHHHHHhc--CCcEEEecCCCCcccC--CHHHHhhh-hCCcccccccccccccCCCCceEEEEe
Confidence 0 00112344444455544 5799999999998421 11111111 1100 0000 010 011235677
Q ss_pred e-CCEEEEEecCCChH---------------HHhh------------------------ccC--cCCHHHHHHHHHhcc-
Q 013632 318 L-DNVRFLGTSGQTID---------------DLQK------------------------YSE--ANDQLEFMERTLRWR- 354 (439)
Q Consensus 318 i-~g~~~l~~sGq~i~---------------di~k------------------------~~~--~~~~l~~~~~~L~~r- 354 (439)
. +|.+|++..+..+. .+++ +.. ....++.++..|...
T Consensus 138 ~~~~~~~i~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~q~~wL~~~L~~~~ 217 (322)
T 2nxf_A 138 PAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSD 217 (322)
T ss_dssp EETTEEEEECCTTSBCSSSSCTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCceecccccCCCChhhHHHHHHHhhcCcccccccCccccccccccccccCCccCHHHHHHHHHHHHHHH
Confidence 6 89999988876531 0000 000 123456677666532
Q ss_pred ----------ccccCCCCCcc--cCCCCCCCCe--eecCCCcE--EEeCCcCccceEEEecCCCCcEEEEecCCCC----
Q 013632 355 ----------HLAPTAPNTLG--CYPFTDRDPF--LVESCPHV--YFAGNQQKFETRLLKGSDRQLVRLVCIPKFS---- 414 (439)
Q Consensus 355 ----------HlaPt~Pdtl~--~~P~~~~Dpf--vi~~~P~V--~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~---- 414 (439)
|..| .+.... ++.. ..+-| ++...|+| +|+||.|...... +..++++++.|+..
T Consensus 218 ~~~~~~iv~~H~p~-~~~~~~~~~~~~-~~~~~~~ll~~~~~v~~~~~GH~H~~~~~~----~~~g~~~i~~~~~~~~~~ 291 (322)
T 2nxf_A 218 HKQERVLIFSHLPV-HPCAADPICLAW-NHEAVLSVLRSHQSVLCFIAGHDHDGGRCT----DSSGAQHITLEGVIETPP 291 (322)
T ss_dssp HHTCEEEEEESSCC-CTTSSCGGGSCT-THHHHHHHHHTCTTEEEEEECSCTTCEEEE----CTTSCEEEECCCGGGCCT
T ss_pred hcCCcEEEEEccCC-CCCCCCcccccc-CHHHHHHHHhcCCCeEEEEcCCcCCCCcee----ccCCceEEEecchhhCCC
Confidence 2222 222110 0000 01111 23455555 9999999887654 12457888888774
Q ss_pred CCCeEEEEECCCCCEEEEEee
Q 013632 415 ETGVAVVVNLKNLECHTLSFG 435 (439)
Q Consensus 415 ~t~~~vlvnl~tl~~~~v~f~ 435 (439)
..+...+|++..-..+...++
T Consensus 292 ~~~~y~~v~~~~~~~~~~~~~ 312 (322)
T 2nxf_A 292 HSHAFATAYLYEDRMVMKGRG 312 (322)
T ss_dssp TSCEEEEEEECSSEEEEEEEE
T ss_pred CCCcEEEEEEECCeEEEEecc
Confidence 345677787766555544443
No 9
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.08 E-value=3.9e-05 Score=70.37 Aligned_cols=202 Identities=13% Similarity=0.164 Sum_probs=102.8
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
.-+|+++||+|.+. ..++.+++.+.. .+++.||++||+++.... .+
T Consensus 5 ~mri~~iSD~H~~~-----~~~~~~~~~~~~-----------~~~D~vi~~GDl~~~~~~------------------~~ 50 (228)
T 1uf3_A 5 VRYILATSNPMGDL-----EALEKFVKLAPD-----------TGADAIALIGNLMPKAAK------------------SR 50 (228)
T ss_dssp CCEEEEEECCTTCH-----HHHHHHHTHHHH-----------HTCSEEEEESCSSCTTCC------------------HH
T ss_pred eEEEEEEeeccCCH-----HHHHHHHHHHhh-----------cCCCEEEECCCCCCCCCC------------------HH
Confidence 35799999999853 355666665432 257899999999865210 12
Q ss_pred HHHHHHHhhcC-CCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeC-CEEEEEecCCChHHHhhc
Q 013632 260 ELDILLTQIAA-GVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELD-NVRFLGTSGQTIDDLQKY 337 (439)
Q Consensus 260 ~ld~~L~~l~~-~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~-g~~~l~~sGq~i~di~k~ 337 (439)
.+.+++..+.. .+++..+|||||.... ..+... +.....++......| ..+.++ ++.|+|..|...... .+
T Consensus 51 ~~~~~~~~l~~~~~pv~~v~GNHD~~~~----~~~~~~-~~~~~~~~~~~~l~~-~~~~~~~~~~i~g~~~~~~~~~-~~ 123 (228)
T 1uf3_A 51 DYAAFFRILSEAHLPTAYVPGPQDAPIW----EYLREA-ANVELVHPEMRNVHE-TFTFWRGPYLVAGVGGEIADEG-EP 123 (228)
T ss_dssp HHHHHHHHHGGGCSCEEEECCTTSCSHH----HHHHHH-HHHHHHCTTEEECBT-SEEEETTTEEEEEECSEEESSS-CC
T ss_pred HHHHHHHHHHhcCCcEEEECCCCCchhH----HHHHhh-hhhhccCcceEEccc-ceEeeCCCcEEecCCCCcCCCC-cc
Confidence 22333333332 4689999999997531 111111 000000011222223 245666 888888865332110 11
Q ss_pred cCcCCH-------HHHHHHHHhc---------cccccCCCCCcccCCCCCCC---CeeecCCCcEEEeCCcCccceEEEe
Q 013632 338 SEANDQ-------LEFMERTLRW---------RHLAPTAPNTLGCYPFTDRD---PFLVESCPHVYFAGNQQKFETRLLK 398 (439)
Q Consensus 338 ~~~~~~-------l~~~~~~L~~---------rHlaPt~Pdtl~~~P~~~~D---pfvi~~~P~V~~~Gn~~~f~~~~~~ 398 (439)
.. +.. .+..+..|+. -|-.|.... . .....+ .++-..-++++++||.| .+....
T Consensus 124 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~il~~H~p~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~GH~H-~~~~~~- 196 (228)
T 1uf3_A 124 EE-HEALRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKG---L-NEQGSHEVAHLIKTHNPLLVLVAGKG-QKHEML- 196 (228)
T ss_dssp BS-SSSCEEEHHHHHHHHGGGGGSCSCCEEEEESSCBCBTT---T-BTTSBHHHHHHHHHHCCSEEEECCSS-CEEEEE-
T ss_pred Ch-hhcccchhhhHHHHHHHHHhCCCCCeEEEEccCcccCC---c-cccCHHHHHHHHHHhCCCEEEEcccc-cCcccc-
Confidence 10 000 0011111111 232221110 0 000000 01112358999999999 444322
Q ss_pred cCCCCcEEEEecCCCCCCCeEEEEECCCCCEEEEEe
Q 013632 399 GSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 434 (439)
Q Consensus 399 ~~~~~~~~lv~vP~F~~t~~~vlvnl~tl~~~~v~f 434 (439)
.++++++..+.. .+...++++...+++.+++
T Consensus 197 ----~~~~~in~Gs~~-~~~~~i~~~~~~~~~~~~v 227 (228)
T 1uf3_A 197 ----GASWVVVPGDLS-EGEYSLLDLRARKLETGNV 227 (228)
T ss_dssp ----TTEEEEECCBGG-GTEEEEEETTTTEEEEEEC
T ss_pred ----CCceEEEecccC-CCceEEEEecceEeeeccc
Confidence 256788877765 6899999998866665543
No 10
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=98.06 E-value=2.2e-05 Score=79.54 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=52.0
Q ss_pred EEEEEecCCCCCC----CCCh---hHHHHHHHHHhccCCCcccccccCCceEEEEeccCC-CcCCCCCCCCcccccchhh
Q 013632 182 YVVLVSGLNVGSG----TSNP---LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSI-EIPRGLLNGQNLASKDQSR 253 (439)
Q Consensus 182 ~i~~vSgl~lgs~----~~~~---~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i-~~~~~~~~~~~~~~~~~~~ 253 (439)
+|+.+||+|+|.. .... .....+++++...+ ...+++.||++||++ +....
T Consensus 2 rilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~-------~~~~~D~vliaGDl~hd~~~~-------------- 60 (379)
T 3tho_B 2 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEA-------EKREVDLILLTGDLLHSRNNP-------------- 60 (379)
T ss_dssp EEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHH-------HHHTCSEEEECSCCBSCSSSC--------------
T ss_pred eEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHH-------HhcCCCEEEECCCccccCCCC--------------
Confidence 6899999999986 2211 11222333332211 135689999999999 65321
Q ss_pred hhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 254 ~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
..+.++.+.++|..+...++|++++||||..
T Consensus 61 ~~~~~~~~~~~l~~l~~~~~v~~i~GNHD~~ 91 (379)
T 3tho_B 61 SVVALHDLLDYLKRMMRTAPVVVLPGNQDWK 91 (379)
T ss_dssp CHHHHHHHHHHHHHHHHHSCEEECCCTTSCT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEcCCCccc
Confidence 1234566777777775448999999999943
No 11
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=98.06 E-value=0.00018 Score=72.80 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCeEEEEEecCCCCCCCCCh--------hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccc
Q 013632 179 EDKYVVLVSGLNVGSGTSNP--------LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKD 250 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~--------~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~ 250 (439)
..-+|+.+||+|+|...... ..++.+++.+. ..+++.||+|||+++....
T Consensus 19 ~~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~-----------~~~~D~VliaGDl~d~~~p----------- 76 (386)
T 3av0_A 19 SHMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKIL-----------EIKPDVVLHSGDLFNDLRP----------- 76 (386)
T ss_dssp CCCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHH-----------TTCCSEEEECSCSBSSSSC-----------
T ss_pred CCeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHH-----------HcCCCEEEECCCCCCCCCC-----------
Confidence 45689999999999742211 23455555543 2568999999999976311
Q ss_pred hhhhhHhHHHHHHHHHhhcC-CCcEEEcCCCCCCCC
Q 013632 251 QSRLFEPIKELDILLTQIAA-GVPLDIMPGPNDPAN 285 (439)
Q Consensus 251 ~~~~~~~~~~ld~~L~~l~~-~i~V~imPG~~Dp~~ 285 (439)
....++.+.++|.++.. .++|.++|||||...
T Consensus 77 ---~~~~~~~~~~~l~~L~~~~~pv~~v~GNHD~~~ 109 (386)
T 3av0_A 77 ---PVKALRIAMQAFKKLHENNIKVYIVAGNHEMPR 109 (386)
T ss_dssp ---CHHHHHHHHHHHHHHHHTTCEEEECCCGGGSCS
T ss_pred ---CHHHHHHHHHHHHHHHhcCCcEEEEcCCCCCCc
Confidence 01234556667777744 589999999999864
No 12
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=98.01 E-value=7.7e-05 Score=70.26 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=103.5
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|. +...++.+++.+.... ....+++.+|++||+++... . ..+.++
T Consensus 3 ~i~~isD~H~-----~~~~l~~~l~~~~~~~------~~~~~~d~ii~~GD~~~~g~------~--------~~~~~~-- 55 (252)
T 1nnw_A 3 YVAVLANIAG-----NLPALTAALSRIEEMR------EEGYEIEKYYILGNIVGLFP------Y--------PKEVIE-- 55 (252)
T ss_dssp EEEEEECCTT-----CHHHHHHHHHHHHHHH------HTTCCEEEEEEESCSSSSSS------C--------HHHHHH--
T ss_pred EEEEEeecCC-----CHHHHHHHHHHHHhhh------hccCCCCEEEEeCccCCCCC------C--------HHHHHH--
Confidence 6899999995 2446667777665100 00125799999999986421 0 011223
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCCCC-CCCCC-cccccc---CCCC----CcC----------CCceeecCCcEEEeCCEE
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPANF-SLPQQ-PLNRCL---FPGS----ATY----------NTFRSCTNPHCFELDNVR 322 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~~~-~lPQq-pl~~~l---f~~~----~~~----------~~~~~~tNP~~~~i~g~~ 322 (439)
+|.++....++.++|||||.... ..... ...... +... ..+ .-+...+.-..+.++|.+
T Consensus 56 --~l~~l~~~~~~~~v~GNhD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~ 133 (252)
T 1nnw_A 56 --VIKDLTKKENVKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNE 133 (252)
T ss_dssp --HHHHHHHHSCEEEECCHHHHHHHHSCTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEE
T ss_pred --HHHhhHhhcCeeEEecchHHHhhccccccCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcE
Confidence 23333222479999999996521 01111 000000 0000 000 001111222345568999
Q ss_pred EEEecCCChHHHhhccCcCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCC
Q 013632 323 FLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDR 402 (439)
Q Consensus 323 ~l~~sGq~i~di~k~~~~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~ 402 (439)
|+.+||-.......+.......+.+..+++. + .-++++++||.|......+
T Consensus 134 i~~~H~~p~~~~~~~~~~~~~~~~l~~~~~~-------------~-----------~~~~~vi~GHtH~~~~~~~----- 184 (252)
T 1nnw_A 134 VFGVYGSPINPFDGEVLAEQPTSYYEAIMRP-------------V-----------KDYEMLIVASPMYPVDAMT----- 184 (252)
T ss_dssp EEEESSCSSCTTTCCCCSSCCHHHHHHHHGG-------------G-----------TTSSEEEESTTCSEEEEEE-----
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHhc-------------C-----------CCCCEEEECCccccceEec-----
Confidence 9999987633322222111111112222211 0 1357899999998766554
Q ss_pred CcEEEEecCCCC------CCCeEEEEECCCCCEEEEEee
Q 013632 403 QLVRLVCIPKFS------ETGVAVVVNLKNLECHTLSFG 435 (439)
Q Consensus 403 ~~~~lv~vP~F~------~t~~~vlvnl~tl~~~~v~f~ 435 (439)
.++.+++.++.. ..++.+++++.+.+++...+.
T Consensus 185 ~~~~~in~Gs~~~~~~~~~~~~y~il~~~~~~v~~~~v~ 223 (252)
T 1nnw_A 185 RYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIEVE 223 (252)
T ss_dssp TTEEEEEECCSSSCSSSSCCEEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEECCCccCCCCCCCcceEEEEECCCCeEEEEEeC
Confidence 346778887764 246889999988777766543
No 13
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=97.97 E-value=0.00037 Score=64.44 Aligned_cols=165 Identities=12% Similarity=0.080 Sum_probs=98.8
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
-+|+++||+|.+ ...++.+++.+.. .+++.+|++||+++.... ... ...+ ..+.
T Consensus 26 mki~~iSD~H~~-----~~~l~~~l~~~~~-----------~~~d~vi~~GDl~~~g~~----~~~-~~~~-----~~~~ 79 (208)
T 1su1_A 26 MKLMFASDIHGS-----LPATERVLELFAQ-----------SGAQWLVILGDVLNHGPR----NAL-PEGY-----APAK 79 (208)
T ss_dssp CEEEEECCCTTB-----HHHHHHHHHHHHH-----------HTCSEEEECSCCSCCCTT----SCC-CTTB-----CHHH
T ss_pred EEEEEEEcCCCC-----HHHHHHHHHHHHh-----------cCCCEEEECCCccccCcc----ccc-cccc-----CHHH
Confidence 479999999963 3466777777642 246899999999974211 000 0000 1244
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCc
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA 340 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~ 340 (439)
+-++|.++. .++.+++||||.....+ + .-|+. .+...++.++|.+|+++||.....
T Consensus 80 ~~~~l~~~~--~~v~~V~GNHD~~~~~~----~--~~~~~---------~~~~~~~~~~g~~i~l~Hg~~~~~------- 135 (208)
T 1su1_A 80 VVERLNEVA--HKVIAVRGNCDSEVDQM----L--LHFPI---------TAPWQQVLLEKQRLFLTHGHLFGP------- 135 (208)
T ss_dssp HHHHHHTTG--GGEEECCCTTCCHHHHH----H--SSSCC---------CCSEEEEECSSCEEEEECSSSSBT-------
T ss_pred HHHHHHhcC--CceEEEECCCchHHHHh----h--hhccc---------cCceEEEEECCcEEEEECCCCCCc-------
Confidence 445666664 58999999999752000 0 00111 112246788999999999965320
Q ss_pred CCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCC-----C
Q 013632 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFS-----E 415 (439)
Q Consensus 341 ~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~-----~ 415 (439)
+.+.. + .-++++++||.|....... .++.+++.++.. .
T Consensus 136 ---------------------~~l~~----------~-~~~d~vi~GHtH~~~~~~~-----~~~~~iNpGs~~~pr~~~ 178 (208)
T 1su1_A 136 ---------------------ENLPA----------L-NQNDVLVYGHTHLPVAEQR-----GEIFHFNPGSVSIPKGGN 178 (208)
T ss_dssp ---------------------TBCCC----------C-CTTCEEECCSSCCCEEEEE-----TTEEEEECCCSSCCCTTC
T ss_pred ---------------------chhhh----------h-cCCCEEEECCcccCccEEe-----CCEEEEECCCCcCCCCCC
Confidence 01110 1 1348999999997765443 346788887765 3
Q ss_pred CCeEEEEECCCCCEEEEEe
Q 013632 416 TGVAVVVNLKNLECHTLSF 434 (439)
Q Consensus 416 t~~~vlvnl~tl~~~~v~f 434 (439)
..+.++++.. +.+.+++
T Consensus 179 ~~sy~il~~~--~~~~~~~ 195 (208)
T 1su1_A 179 PASYGMLDND--VLSVIAL 195 (208)
T ss_dssp CCEEEEEETT--EEEEEET
T ss_pred CCEEEEEECC--eEEEEEe
Confidence 5688888864 3444443
No 14
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=97.91 E-value=0.00039 Score=62.77 Aligned_cols=149 Identities=18% Similarity=0.197 Sum_probs=90.9
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
-+|+++||+|..... ..++.+++.+. .+++.+|++||+++. +.++
T Consensus 23 mri~~iSD~Hg~~~~---~~l~~~l~~~~------------~~~D~ii~~GD~~~~-------------------~~~~- 67 (178)
T 2kkn_A 23 KRFLLISDSHVPVRM---ASLPDEILNSL------------KEYDGVIGLGDYVDL-------------------DTVI- 67 (178)
T ss_dssp EEEEEECCCCBTTTT---CCCCHHHHHGG------------GGCSEEEESSCBSCH-------------------HHHH-
T ss_pred eEEEEEecccCCCCH---HHHHHHHHHHh------------cCCCEEEECCCCCCH-------------------HHHH-
Confidence 479999999941221 12222222211 346899999998752 1222
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCc
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA 340 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~ 340 (439)
+|.++. .++..++||||..... .. .+....++++|.+|+++||...
T Consensus 68 ---~l~~~~--~~v~~V~GNhD~~~~~--------~~------------lp~~~~~~~~g~~i~l~HG~~~--------- 113 (178)
T 2kkn_A 68 ---LLEKFS--KEFYGVHGNMDYPDVK--------EH------------LPFSKVLLVEGVTIGMCHGWGA--------- 113 (178)
T ss_dssp ---HHHHHT--SSEEECCCSSSCGGGG--------GT------------SCSCEEEEETTEEEEECCSCCC---------
T ss_pred ---HHHhcC--CCEEEEECCCCcHHHH--------hh------------CCcceEEEECCEEEEEECCCCC---------
Confidence 333442 5899999999974210 00 1223468899999999999642
Q ss_pred CCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCCCCeEE
Q 013632 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAV 420 (439)
Q Consensus 341 ~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~t~~~v 420 (439)
+.+.-+.+.+ .+ ..-++++++||.|....... .++++++..+... ++.+
T Consensus 114 --~~~~~~~~~~---------------------~~--~~~~d~vi~GHtH~~~~~~~-----~~~~~iNpGS~~~-~sy~ 162 (178)
T 2kkn_A 114 --PWDLKDRLLK---------------------VF--NEKPQVILFGHTHEPEDTVK-----AGVRFLNPGSLAE-GSYA 162 (178)
T ss_dssp --HHHHHHHHHH---------------------HS--SSCCSEEECCSCSSCCEEEE-----TTEEEECCCCTTT-TEEE
T ss_pred --CCCHHHHHHH---------------------Hh--ccCCCEEEECccCCCCeEEe-----CCEEEEECCCCCC-CeEE
Confidence 1111111110 00 12358999999997776544 3578899888776 8999
Q ss_pred EEECCCCCE
Q 013632 421 VVNLKNLEC 429 (439)
Q Consensus 421 lvnl~tl~~ 429 (439)
++++.+-+.
T Consensus 163 il~~~~~~~ 171 (178)
T 2kkn_A 163 VLELDGGEV 171 (178)
T ss_dssp EEEEETTEE
T ss_pred EEEECCCEE
Confidence 999977543
No 15
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=97.84 E-value=0.00043 Score=70.71 Aligned_cols=220 Identities=13% Similarity=0.133 Sum_probs=112.0
Q ss_pred CCeEEEEEecCCCCCCCC---------------------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcC
Q 013632 179 EDKYVVLVSGLNVGSGTS---------------------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP 237 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~---------------------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~ 237 (439)
..-+|+++||+|++.... ....++.+++.+.. .+++.||++||+++..
T Consensus 38 ~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~d~vi~~GDl~~~~ 106 (443)
T 2xmo_A 38 RNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVES-----------KKTDVLIISGDLTNNG 106 (443)
T ss_dssp CCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHH-----------HTCSEEEEESCCBSSC
T ss_pred CCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHH-----------cCCCEEEECCCCCCCC
Confidence 467899999999975320 12244555555432 3578999999998652
Q ss_pred CCCCCCCcccccchhhhhHhHHHHHHHHHhhc-CCCcEEEcCCCCCCCCCCC----CCC-----cccc----ccCCCCCc
Q 013632 238 RGLLNGQNLASKDQSRLFEPIKELDILLTQIA-AGVPLDIMPGPNDPANFSL----PQQ-----PLNR----CLFPGSAT 303 (439)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~ld~~L~~l~-~~i~V~imPG~~Dp~~~~l----PQq-----pl~~----~lf~~~~~ 303 (439)
. ...++.+.++|..+. ..++|..+|||||...... +.. .+.. ..|... .
T Consensus 107 ~----------------~~~~~~~~~~l~~l~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 169 (443)
T 2xmo_A 107 E----------------KTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYSDF-G 169 (443)
T ss_dssp C----------------HHHHHHHHHHHHHHHHTTCEEEEECCTTTSSCTTCEEEETTEEEECCCCCHHHHHHHTCCC-C
T ss_pred C----------------HHHHHHHHHHHHHHHhCCCeEEEECCcCCCCCccccccCCcccccccccCHHHHHHHhhhc-C
Confidence 1 012344455555553 2679999999999864210 000 0000 112211 0
Q ss_pred CC-Cceee--cCCcEE-EeCCEEEEEecCCChHHHhh----ccC---cCCHHHHHHHHHhcc-----------ccccCCC
Q 013632 304 YN-TFRSC--TNPHCF-ELDNVRFLGTSGQTIDDLQK----YSE---ANDQLEFMERTLRWR-----------HLAPTAP 361 (439)
Q Consensus 304 ~~-~~~~~--tNP~~~-~i~g~~~l~~sGq~i~di~k----~~~---~~~~l~~~~~~L~~r-----------HlaPt~P 361 (439)
|. .+... +-+|.+ ..+|++|++........-.. ... ....++.++..|+.. |..|...
T Consensus 170 ~~~~~~~~~~~~~y~~~~~~~~~~i~Lds~~~~~~~~~~~~~~~g~~~~~ql~wL~~~L~~~~~~~~~~Iv~~H~p~~~~ 249 (443)
T 2xmo_A 170 YEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDH 249 (443)
T ss_dssp CTTCSEECSSSSCEEECSBSSEEEEECCCBCCTTHHHHTSCCCCBCCCHHHHHHHHHHHHHHHHTTCEEEEECSSBSSCS
T ss_pred hhhhhccCCCCceEEEecCCCEEEEEeeCCCcCcccccCCCCcCCccCHHHHHHHHHHHHHHHHcCCeEEEEECCCCccc
Confidence 10 11111 223333 25788888765443211000 010 123456666666431 3333221
Q ss_pred CCcc--cCCCCCCCCe--ee-cCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC-CCeEEEEECCC
Q 013632 362 NTLG--CYPFTDRDPF--LV-ESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE-TGVAVVVNLKN 426 (439)
Q Consensus 362 dtl~--~~P~~~~Dpf--vi-~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~-t~~~vlvnl~t 426 (439)
...+ .+.....+-| ++ ..-++++|+||.|......+.+.+|..+..++.++++. ++...++++..
T Consensus 250 ~~~~~~~~~~~~~~~l~~ll~~~~v~lvl~GH~H~~~~~~~~~~~g~~~~~i~~gs~~~~p~~y~il~i~~ 320 (443)
T 2xmo_A 250 NDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSA 320 (443)
T ss_dssp SCC--CCSBCTTHHHHHHHHHHTTCCEEEECSSCSCEEEEEECTTSCEEEEEECCCTTSTTCEEEEEEEET
T ss_pred ccccccccccccHHHHHHHHHHcCCeEEEECCcccCchhhcccCCCCceEEEEcCccccCCCCeEEEEEeC
Confidence 1100 0000000000 11 12478999999999888777655556677777777743 35556666643
No 16
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=97.74 E-value=0.0016 Score=58.20 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=88.4
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
-+|+++||+| |+ ...++.+++.+.. +++.+|++||+. . +
T Consensus 7 m~i~~isD~H-~~----~~~~~~~~~~~~~------------~~d~i~~~GD~~-~-------~---------------- 45 (176)
T 3ck2_A 7 QTIIVMSDSH-GD----SLIVEEVRDRYVG------------KVDAVFHNGDSE-L-------R---------------- 45 (176)
T ss_dssp EEEEEECCCT-TC----HHHHHHHHHHHTT------------TSSEEEECSCCC-S-------C----------------
T ss_pred cEEEEEecCC-CC----HHHHHHHHHHhhc------------CCCEEEECCCCc-h-------H----------------
Confidence 5799999999 32 4466777766531 468999999951 1 0
Q ss_pred HHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHHhhccCc
Q 013632 261 LDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEA 340 (439)
Q Consensus 261 ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di~k~~~~ 340 (439)
+|..+.. ++..++||||... .+| . ...++++|.+|+++||.... . .
T Consensus 46 ---~l~~l~~--~~~~v~GNhD~~~-~~p----------~------------~~~~~~~~~~i~~~Hg~~~~-~-----~ 91 (176)
T 3ck2_A 46 ---PDSPLWE--GIRVVKGNMDFYA-GYP----------E------------RLVTELGSTKIIQTHGHLFD-I-----N 91 (176)
T ss_dssp ---TTCGGGT--TEEECCCTTCCST-TCC----------S------------EEEEEETTEEEEEECSGGGT-T-----T
T ss_pred ---HHHhhhC--CeEEecCcccchh-cCC----------c------------EEEEEECCeEEEEECCCccC-C-----C
Confidence 0112222 8999999999653 122 1 23567899999999996532 0 0
Q ss_pred CCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCC-----
Q 013632 341 NDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE----- 415 (439)
Q Consensus 341 ~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~----- 415 (439)
.+..+ +...+ -..-++++++||.|....... .++++++.++...
T Consensus 92 ~~~~~-l~~~~-------------------------~~~~~d~vi~GHtH~~~~~~~-----~~~~~inpGs~~~~~~~~ 140 (176)
T 3ck2_A 92 FNFQK-LDYWA-------------------------QEEEAAICLYGHLHVPSAWLE-----GKILFLNPGSISQPRGTI 140 (176)
T ss_dssp TCSHH-HHHHH-------------------------HHTTCSEEECCSSCCEEEEEE-----TTEEEEEECCSSSCCTTC
T ss_pred CCHHH-HHHHH-------------------------HhcCCCEEEECCcCCCCcEEE-----CCEEEEECCCCCcCCCCC
Confidence 01101 11111 122357899999998776544 3467788766542
Q ss_pred C-CeEEEEECCCCC
Q 013632 416 T-GVAVVVNLKNLE 428 (439)
Q Consensus 416 t-~~~vlvnl~tl~ 428 (439)
. ++..++++.+-+
T Consensus 141 ~~~~y~il~~~~~~ 154 (176)
T 3ck2_A 141 RECLYARVEIDDSY 154 (176)
T ss_dssp CSCCEEEEEECSSE
T ss_pred CCCeEEEEEEcCCE
Confidence 2 788999987643
No 17
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=97.67 E-value=7.3e-05 Score=73.95 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCC----CCCCC-------hhHHHHHHHHHhccCCCcccccccCCceEEEEecc-CCCcCCCCCCCCcc
Q 013632 179 EDKYVVLVSGLNVG----SGTSN-------PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGN-SIEIPRGLLNGQNL 246 (439)
Q Consensus 179 ~~~~i~~vSgl~lg----s~~~~-------~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn-~i~~~~~~~~~~~~ 246 (439)
..-+|+.+||+|+| ..... ...++.+++.+. ..+++.||++|| +++....
T Consensus 17 ~~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~-----------~~~~D~vliaGD~l~d~~~~------- 78 (336)
T 2q8u_A 17 KELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAE-----------KREVDLILLTGDLLHSRNNP------- 78 (336)
T ss_dssp CEEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHH-----------HHTCSEEEEESCSBSCSSCC-------
T ss_pred CceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHH-----------HhCCCEEEECCccccCCCCC-------
Confidence 46789999999999 32111 223444444443 246899999999 8875321
Q ss_pred cccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEE---Ee--CCE
Q 013632 247 ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCF---EL--DNV 321 (439)
Q Consensus 247 ~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~---~i--~g~ 321 (439)
..+.++.+.++|.++...++|.++|||||... + . ....++.... .+++...|+... .+ +++
T Consensus 79 -------~~~~~~~~~~~l~~L~~~~pv~~i~GNHD~~~--~--~-~~~~~l~~~g--~nv~v~~~~~~~~~~~~~~~~v 144 (336)
T 2q8u_A 79 -------SVVALHDLLDYLKRMMRTAPVVVLPGNHDWKG--L--K-LFGNFVTSIS--SDITFVMSFEPVDVEAKRGQKV 144 (336)
T ss_dssp -------CHHHHHHHHHHHHHHHHHSCEEECCC--------C--H-HHHHHHHHHC--SSEEECCSSSCEEEECTTSCEE
T ss_pred -------CHHHHHHHHHHHHHHHhcCCEEEECCCCCccc--c--c-cHHHHHHhcC--CEEEEEecccccCceEEeCCCE
Confidence 01235566677777754479999999999854 1 0 1111211100 247777777652 23 456
Q ss_pred EEEEec
Q 013632 322 RFLGTS 327 (439)
Q Consensus 322 ~~l~~s 327 (439)
.|.+..
T Consensus 145 ~i~glp 150 (336)
T 2q8u_A 145 RILPFP 150 (336)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 666664
No 18
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=97.59 E-value=0.00015 Score=71.71 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=53.6
Q ss_pred EEEEEecCCCCCCCCC-h-------hHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhh
Q 013632 182 YVVLVSGLNVGSGTSN-P-------LQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~-~-------~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~ 253 (439)
+|+.+||+|+|..... . ..++.+++.+. ..+++.||++||+++....
T Consensus 2 kilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~D~vl~~GDl~d~~~~-------------- 56 (333)
T 1ii7_A 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAV-----------QENVDFILIAGDLFHSSRP-------------- 56 (333)
T ss_dssp EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHH-----------HTTCSEEEEESCSBSSSSC--------------
T ss_pred EEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHH-----------hcCCCEEEECCCcCCCCCC--------------
Confidence 5899999999975321 1 23344444432 3568999999999986311
Q ss_pred hhHhHHHHHHHHHhhcC-CCcEEEcCCCCCCC
Q 013632 254 LFEPIKELDILLTQIAA-GVPLDIMPGPNDPA 284 (439)
Q Consensus 254 ~~~~~~~ld~~L~~l~~-~i~V~imPG~~Dp~ 284 (439)
..+.++.+.++|..+.. .++|.++|||||..
T Consensus 57 ~~~~~~~~~~~l~~l~~~~~~v~~v~GNHD~~ 88 (333)
T 1ii7_A 57 SPGTLKKAIALLQIPKEHSIPVFAIEGNHDRT 88 (333)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCEEEECCTTTCC
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEeCCcCCCc
Confidence 01345667777887754 68999999999986
No 19
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=97.59 E-value=0.0026 Score=62.23 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=105.9
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
+.-+|+++||+|...... . ...++.||++||+.+... .+.+
T Consensus 58 ~~mri~~iSD~H~~~~~l--------------~---------i~~~D~vi~aGDl~~~g~----------------~~e~ 98 (296)
T 3rl5_A 58 GHTRFVCISDTRSRTDGI--------------Q---------MPYGDILLHTGDFTELGL----------------PSEV 98 (296)
T ss_dssp TEEEEEEEBCCTTCCTTC--------------C---------CCSCSEEEECSCCSSSCC----------------HHHH
T ss_pred CCeEEEEEeeCCCCcchh--------------c---------cCCCCEEEECCcccCCCC----------------HHHH
Confidence 457899999999865321 1 135799999999986421 1235
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCC-CCC----CCCCcc------c---cccCCCCCc-CCCceeecCCcEEEeCCEEE
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDPA-NFS----LPQQPL------N---RCLFPGSAT-YNTFRSCTNPHCFELDNVRF 323 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp~-~~~----lPQqpl------~---~~lf~~~~~-~~~~~~~tNP~~~~i~g~~~ 323 (439)
+.+-++|+++. ..++.+++||||.. ... +.-+.. + ...+..... ..++..+-+ ..++++|++|
T Consensus 99 ~~~~~~L~~l~-~~~v~~V~GNHD~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~-~~~~i~Gl~i 176 (296)
T 3rl5_A 99 KKFNDWLGNLP-YEYKIVIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQD-SEVTVKGFRI 176 (296)
T ss_dssp HHHHHHHHTSC-CSEEEECCCTTCGGGCHHHHHHHTTSCGGGSHHHHTCCHHHHTTTGGGCTTSEECSS-EEEEETTEEE
T ss_pred HHHHHHHHhCC-CCeEEEEcCCcccccchhhhhhhhcccccccccccccccchhhhHhhhcCCeEEecC-CcEEECCEEE
Confidence 66666777774 34699999999985 210 000000 0 000000100 122333333 4467899999
Q ss_pred EEecCCChHHHhhccCcCCHH-HHHHHHHhccccccCCCCCccc--CCCCCCCCe--------------ee--cCCCcEE
Q 013632 324 LGTSGQTIDDLQKYSEANDQL-EFMERTLRWRHLAPTAPNTLGC--YPFTDRDPF--------------LV--ESCPHVY 384 (439)
Q Consensus 324 l~~sGq~i~di~k~~~~~~~l-~~~~~~L~~rHlaPt~Pdtl~~--~P~~~~Dpf--------------vi--~~~P~V~ 384 (439)
.|+.+..-..-..+ ..... ++.+ .|.-+ |...|-+-+ -|+.-.|-. .| ..-|++.
T Consensus 177 ~Gsp~tP~~~~~~f--~~~~~~~~~~---~~~~i-p~~~dILvTH~PP~g~~D~~~~~~~~~G~~~L~~~i~~~~~p~l~ 250 (296)
T 3rl5_A 177 YGAPWTPWFNGWGF--NLPRGQSLLD---KWNLI-PEGTDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLH 250 (296)
T ss_dssp EEECCBCC--CCTT--BCCTTHHHHH---HHTTS-CTTCSEEEESSCBTTSSCEEGGGTEECSBHHHHHHHHHTTCCSEE
T ss_pred EEecCCCCCCCcCC--CcchHHHHHH---HHhhC-CCCCeEEEECCCccccccccccccCcCChHHHHHHHHHhcCCCEE
Confidence 99766543221111 11221 2222 24433 544454422 233322321 22 3469999
Q ss_pred EeCCcCcc-ceEEEecCCCCcEEEEecCCCCCC----CeEEEEECCC
Q 013632 385 FAGNQQKF-ETRLLKGSDRQLVRLVCIPKFSET----GVAVVVNLKN 426 (439)
Q Consensus 385 ~~Gn~~~f-~~~~~~~~~~~~~~lv~vP~F~~t----~~~vlvnl~t 426 (439)
++||.|.. +.... .++++++..+.... +..+++||..
T Consensus 251 v~GH~H~~~~~~~~-----g~t~vvNpGs~~~~~~~~n~p~v~dl~~ 292 (296)
T 3rl5_A 251 VFGGIHEGYGTMTD-----GYTTYINASTCTVSFQPTNPPIIFDLPN 292 (296)
T ss_dssp EECSCGGGCEEEEC-----SSCEEEECBCSCTTSCCCSCCEEEEEEC
T ss_pred EECCccCCCceEEE-----CCEEEEECCcCCcCcCCCCCCEEEEecC
Confidence 99999964 43322 35788888877553 5667777643
No 20
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=97.52 E-value=0.00059 Score=65.73 Aligned_cols=183 Identities=9% Similarity=0.039 Sum_probs=98.1
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
+..+|+++||+|- +...++.+++.+.. ..++.+|++||.++... . +
T Consensus 10 ~~~~i~~iSDiHg-----~~~~l~~vl~~~~~-----------~~~D~ii~~GDlv~~g~--~---------------~- 55 (270)
T 3qfm_A 10 DMTKIALLSDIHG-----NTTALEAVLADARQ-----------LGVDEYWLLGDILMPGT--G---------------R- 55 (270)
T ss_dssp -CEEEEEECCCTT-----CHHHHHHHHHHHHH-----------TTCCEEEECSCCSSSSS--C---------------S-
T ss_pred cccEEEEEecCCC-----CHHHHHHHHHHHHh-----------cCCCEEEEcCCCCCCCC--C---------------H-
Confidence 4678999999993 24567777766642 35789999999997421 0 1
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCCCC--CCCCCcccc--c-cCCCCCcC--CCc------eeecCCcEE--EeCCEEE
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDPANF--SLPQQPLNR--C-LFPGSATY--NTF------RSCTNPHCF--ELDNVRF 323 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp~~~--~lPQqpl~~--~-lf~~~~~~--~~~------~~~tNP~~~--~i~g~~~ 323 (439)
.++-++|.++ -++..++||||-.-. ......+.. + .+.....| ..+ -+.+=|... +++|.+|
T Consensus 56 ~~~~~~l~~~---~~~~~v~GNhD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i 132 (270)
T 3qfm_A 56 RRILDLLDQL---PITARVLGNWEDSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTV 132 (270)
T ss_dssp HHHHHHHHTS---CEEEECCCHHHHHHHHHHTTCSCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEE
T ss_pred HHHHHHHHcc---CCEEEEcCChHHHHHHhhccccCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEE
Confidence 1222233443 268899999996410 000001100 0 00000000 000 012346554 5699999
Q ss_pred EEecCCChHHHhhccCcCCHHHHHHHHHhccccccCCCCCcccCCCCCCCCeeecCCCcEEEeCCcCccceEEEecCCCC
Q 013632 324 LGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQ 403 (439)
Q Consensus 324 l~~sGq~i~di~k~~~~~~~l~~~~~~L~~rHlaPt~Pdtl~~~P~~~~Dpfvi~~~P~V~~~Gn~~~f~~~~~~~~~~~ 403 (439)
+++||..-++.-.+.......+.+..+++ ..-.+++++||.|.-...... .
T Consensus 133 ~lvHg~p~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~d~~i~GHtH~~~~~~~~----~ 183 (270)
T 3qfm_A 133 GISHHLPDKNWGRELIHTGKQEEFDRLVT-------------------------HPPCDIAVYGHIHQQLLRYGT----G 183 (270)
T ss_dssp EEESSBTTBSSSSTTSTTCCHHHHHHTTT-------------------------TTTCSEEECCSSCSEEEEECT----T
T ss_pred EEEECCCCCCCCceecCCCcHHHHHHHhc-------------------------ccCCCEEEECCcCchHheecc----C
Confidence 99999765432222211111111221110 113589999999965554332 2
Q ss_pred cEEEEecCCCCC------------CCeEEEEECCCC
Q 013632 404 LVRLVCIPKFSE------------TGVAVVVNLKNL 427 (439)
Q Consensus 404 ~~~lv~vP~F~~------------t~~~vlvnl~tl 427 (439)
++.+++++|-.. ..+.+++++..-
T Consensus 184 ~~~~iNpGSvg~pr~~~~~~~~~~~asyaild~~~~ 219 (270)
T 3qfm_A 184 GQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDK 219 (270)
T ss_dssp SCEEEEECCSSSCCCSSTTGGGCCCEEEEEEEEETT
T ss_pred CEEEEECCCccCCCCCCccccCCCCCEEEEEEecCC
Confidence 456777766533 368889998753
No 21
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=97.46 E-value=0.00032 Score=72.26 Aligned_cols=82 Identities=10% Similarity=0.198 Sum_probs=55.5
Q ss_pred CCeEEEEEecCCCCCCCCC-------hhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccch
Q 013632 179 EDKYVVLVSGLNVGSGTSN-------PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQ 251 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~-------~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~ 251 (439)
+.-+|+.+||+|+|..... ...++.+++.+. ..+++.||++||+++....
T Consensus 31 ~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~-----------~~~~D~VliaGDlfd~~~~------------ 87 (431)
T 3t1i_A 31 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQ-----------ENEVDFILLGGDLFHENKP------------ 87 (431)
T ss_dssp GEEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHH-----------HTTCSEEEECSCCBSSSSC------------
T ss_pred CCEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHh-----------hcCCCEEEEcCccccCCCC------------
Confidence 4577999999999975332 124555555554 2568999999999986421
Q ss_pred hhhhHhHHHHHHHHHhhc----------------------------------CCCcEEEcCCCCCCCC
Q 013632 252 SRLFEPIKELDILLTQIA----------------------------------AGVPLDIMPGPNDPAN 285 (439)
Q Consensus 252 ~~~~~~~~~ld~~L~~l~----------------------------------~~i~V~imPG~~Dp~~ 285 (439)
..+.+..+.++|.+++ ..++|++++||||...
T Consensus 88 --~~~~~~~~~~~L~r~~~~~~~~~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~ 153 (431)
T 3t1i_A 88 --SRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPT 153 (431)
T ss_dssp --CHHHHHHHHHHHHHHHBCSSCCCCEECSCC------------------CCBCSCEEECCCSSSCCB
T ss_pred --CHHHHHHHHHHHHHHhccCCcccceeccchhhccccccccccccccccccCCCcEEEEccCCCCcc
Confidence 1234455555555542 3699999999999863
No 22
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=97.31 E-value=0.00035 Score=63.46 Aligned_cols=106 Identities=8% Similarity=-0.073 Sum_probs=64.2
Q ss_pred EEEEEecCCCCCCCC--------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhh
Q 013632 182 YVVLVSGLNVGSGTS--------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSR 253 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~--------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~ 253 (439)
+|+++||+|+|.... ....++.+++.++.. ..+++.+|++||+++.. .+
T Consensus 3 ~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~D~vi~~GDl~~~~------~~-------- 59 (195)
T 1xm7_A 3 MMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKV---------LKPEDTLYHLGDFTWHF------ND-------- 59 (195)
T ss_dssp CEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTT---------CCTTCEEEECSCCBSCS------CC--------
T ss_pred EEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHh---------CCCCCEEEECCCCCCCc------hh--------
Confidence 589999999986531 012344555555432 24679999999988642 10
Q ss_pred hhHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEE-eCCEEEEEecCCCh
Q 013632 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFE-LDNVRFLGTSGQTI 331 (439)
Q Consensus 254 ~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~-i~g~~~l~~sGq~i 331 (439)
.+.+-++|.++. .++.+++||||..... + .. .+. ..+.-.+++ ++|.+|+++||-..
T Consensus 60 ----~~~~~~~l~~l~--~~~~~v~GNhD~~~~~-----~-----~~--~~~---~l~~~~~l~~~~~~~i~~~H~~~~ 117 (195)
T 1xm7_A 60 ----KNEYLRIWKALP--GRKILVMGNHDKDKES-----L-----KE--YFD---EIYDFYKIIEHKGKRILLSHYPAK 117 (195)
T ss_dssp ----TTSHHHHHHHSS--SEEEEECCTTCCCHHH-----H-----TT--TCS---EEESSEEEEEETTEEEEEESSCSS
T ss_pred ----HHHHHHHHHHCC--CCEEEEeCCCCCchhh-----h-----hh--hhh---chhHHHHHHhcCCcEEEEEccCCc
Confidence 112334556664 3899999999974210 0 00 011 122334566 89999999999653
No 23
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=97.30 E-value=0.00053 Score=64.60 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=95.5
Q ss_pred EEEEEecCCCCCCCC-------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhh
Q 013632 182 YVVLVSGLNVGSGTS-------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRL 254 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~-------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~ 254 (439)
+|+.+||+|++.... ....++.+++.+... ..+++.+|++||.++...
T Consensus 2 ri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~---------~~~~d~vi~~GDl~~~~~---------------- 56 (274)
T 3d03_A 2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNAL---------RERPDAVVVSGDIVNCGR---------------- 56 (274)
T ss_dssp EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTC---------SSCCSEEEEESCCBSSCC----------------
T ss_pred EEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhc---------CCCCCEEEECCCCCCCCC----------------
Confidence 689999999986321 124677777777642 236799999999986421
Q ss_pred hHhHHHHHHHHHhhcCCCcEEEcCCCCCCCCCCCCCCccccccCCCCCcCCCceeecCCcEEEeCCEEEEEecCCChHHH
Q 013632 255 FEPIKELDILLTQIAAGVPLDIMPGPNDPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDL 334 (439)
Q Consensus 255 ~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~~~~lPQqpl~~~lf~~~~~~~~~~~~tNP~~~~i~g~~~l~~sGq~i~di 334 (439)
...++.+.++|+++ .+++..+|||||..... ...+...+++... +. -..-+.+..+++.|++........-
T Consensus 57 ~~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~--~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~i~ld~~~~~~~ 127 (274)
T 3d03_A 57 PEEYQVARQILGSL--NYPLYLIPGNHDDKALF--LEYLQPLCPQLGS---DA--NNMRCAVDDFATRLLFIDSSRAGTS 127 (274)
T ss_dssp HHHHHHHHHHHTTC--SSCEEEECCTTSCHHHH--HHHHGGGSGGGCS---CG--GGCCEEECSSSSEEEECCCCCTTCS
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCCCCHHHH--HHHhhhhhcCccc---CC--CceEEEEEeCCEEEEEEeCCCCCCC
Confidence 02345555666665 57999999999974210 0011111110000 00 0113556778899998765432210
Q ss_pred hhccCcCCHHHHHHHHHhcc---------ccccCCCCCcc--cCCCCCCCCe--eecCC--CcEEEeCCcCccceEEE
Q 013632 335 QKYSEANDQLEFMERTLRWR---------HLAPTAPNTLG--CYPFTDRDPF--LVESC--PHVYFAGNQQKFETRLL 397 (439)
Q Consensus 335 ~k~~~~~~~l~~~~~~L~~r---------HlaPt~Pdtl~--~~P~~~~Dpf--vi~~~--P~V~~~Gn~~~f~~~~~ 397 (439)
.... ....++.++..|+.. |..|.....-+ .+.....+-| ++... ++++++||.|......+
T Consensus 128 ~~~~-~~~~~~wl~~~l~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~vl~GH~H~~~~~~~ 204 (274)
T 3d03_A 128 KGWL-TDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQY 204 (274)
T ss_dssp SBCC-CHHHHHHHHHHHHHHTTSCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHHHCTTEEEEEECSSSSCEEEEE
T ss_pred CCee-CHHHHHHHHHHHHhCCCCCEEEEECCCCcccCCcccCcccCcCHHHHHHHHHhCCCceEEEeCCCCCchhheE
Confidence 0000 123456666666542 33222211100 0000011111 23333 58999999998776544
No 24
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=97.21 E-value=0.00056 Score=70.14 Aligned_cols=48 Identities=13% Similarity=0.292 Sum_probs=34.6
Q ss_pred CCeEEEEEecCCCCCCCCC-------hhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcC
Q 013632 179 EDKYVVLVSGLNVGSGTSN-------PLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP 237 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~-------~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~ 237 (439)
+.-+|+.+||+|+|..... ...++.+++.+. ..+++.|||+||.++..
T Consensus 12 ~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~-----------~~~~D~VliaGDLfd~~ 66 (417)
T 4fbw_A 12 NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIAR-----------ERDVDMILLGGDIFHDN 66 (417)
T ss_dssp TCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHH-----------HTTCSEEEECSCCBSSS
T ss_pred CCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHH-----------hcCCCEEEEcCccccCC
Confidence 4678999999999965211 234555555554 25689999999999874
No 25
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=97.20 E-value=0.00058 Score=70.93 Aligned_cols=48 Identities=13% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCeEEEEEecCCCCCCCC-------ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcC
Q 013632 179 EDKYVVLVSGLNVGSGTS-------NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIP 237 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~-------~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~ 237 (439)
+.-+|+.+||+|+|.... ....++.+++.+.. .+++.|||+||.++..
T Consensus 75 ~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~-----------~~~D~VliaGDLfd~~ 129 (472)
T 4fbk_A 75 NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARE-----------RDVDMILLGGDIFHDN 129 (472)
T ss_dssp TCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHH-----------TTCSEEEECSCSBSSS
T ss_pred CCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHh-----------cCCCEEEEcCccccCC
Confidence 467899999999996532 12245666666542 5689999999999874
No 26
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=95.90 E-value=0.094 Score=53.18 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=78.4
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
...+++++||+|.+. ...+ .++.+... ..+++.+|++||.+... + ... ......
T Consensus 125 ~~~~f~~~gD~~~~~-----~~~~-~l~~i~~~---------~~~~D~vl~~GD~~y~~-~-~~~---------~~~~~~ 178 (426)
T 1xzw_A 125 VPYVFGLIGDIGQTH-----DSNT-TLTHYEQN---------SAKGQAVLFMGDLSYSN-R-WPN---------HDNNRW 178 (426)
T ss_dssp CCEEEEEECSCTTBH-----HHHH-HHHHHHHC---------TTCCSEEEECSCCCCGG-G-SGG---------GCTHHH
T ss_pred CCeEEEEEEeCCCCC-----chHH-HHHHHHhC---------CCCCCEEEeCCChhhcc-c-CCc---------ccchHH
Confidence 467899999998752 1222 23333321 13689999999998531 1 000 001234
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCCCCC--CCCCcccc--ccCCCCCcCCCceeecCC-cEEEeCCEEEEEecCCChHH
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDPANFS--LPQQPLNR--CLFPGSATYNTFRSCTNP-HCFELDNVRFLGTSGQTIDD 333 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp~~~~--lPQqpl~~--~lf~~~~~~~~~~~~tNP-~~~~i~g~~~l~~sGq~i~d 333 (439)
+.+..++..+...+++..+|||||-.... -.+.++.. ..|..... ......|- +.|.+++++|++.....-
T Consensus 179 ~~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~p~~--~~~~~~~~~ys~~~g~~~~i~Ldt~~~-- 254 (426)
T 1xzw_A 179 DTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHE--ASGSGDPLWYAIKRASAHIIVLSSYSG-- 254 (426)
T ss_dssp HHHHHHHHHHHTTSCEECCCCGGGCCCBGGGTBCSTTHHHHHHSCCCCG--GGTCSSTTSEEEEETTEEEEECCTTSC--
T ss_pred HHHHHHHHHHHhcCCEEEeccccccccCCccccccCChhheEEEeCCcc--cCCCCCCCeEEEEECCEEEEEeeCccc--
Confidence 45666777777789999999999987421 00112211 11111000 00011222 457889999998875431
Q ss_pred HhhccCcCCHHHHHHHHHhc
Q 013632 334 LQKYSEANDQLEFMERTLRW 353 (439)
Q Consensus 334 i~k~~~~~~~l~~~~~~L~~ 353 (439)
+......++.++..|+.
T Consensus 255 ---~~~~~~Q~~WL~~~L~~ 271 (426)
T 1xzw_A 255 ---FVKYSPQYKWFTSELEK 271 (426)
T ss_dssp ---CSTTSHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHh
Confidence 11234457778887765
No 27
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=93.88 E-value=0.038 Score=52.43 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=47.8
Q ss_pred CCeEEEEEecCCCCCCCC-ChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHh
Q 013632 179 EDKYVVLVSGLNVGSGTS-NPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEP 257 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~-~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (439)
+..+++++||+|++.... .......+.+.|.-.+ ...+++.||++||.+... +...... .+.
T Consensus 5 ~~~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~d~vv~~GD~~~~~-g~~~~~~---------~~~ 67 (313)
T 1ute_A 5 PILRFVAVGDWGGVPNAPFHTAREMANAKAIATTV-------KTLGADFILSLGDNFYFT-GVHDAKD---------KRF 67 (313)
T ss_dssp CCEEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHH-------HHHCCSEEEECSCCSTTT-CCSSTTC---------THH
T ss_pred CceEEEEEcccCCCCCccccCchHHHHHHHHHHHH-------HhcCCCEEEECCCccCcC-CCCCcch---------HHH
Confidence 467899999999986421 1112223333332211 024679999999987541 1111000 011
Q ss_pred HHHHHHHHHhh-cCCCcEEEcCCCCCCCC
Q 013632 258 IKELDILLTQI-AAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 258 ~~~ld~~L~~l-~~~i~V~imPG~~Dp~~ 285 (439)
.+.+..+++.. ...+++.++|||||-..
T Consensus 68 ~~~~~~~~~~~~l~~~p~~~v~GNHD~~~ 96 (313)
T 1ute_A 68 QETFEDVFSDPSLRNVPWHVLAGNHDHLG 96 (313)
T ss_dssp HHHTTTTSCSGGGTTCCEEECCCHHHHHS
T ss_pred HHHHHHHcCchhhcCCCEEEECCCCccCC
Confidence 22222222211 12679999999999753
No 28
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=92.55 E-value=0.13 Score=48.00 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=42.2
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
.-+|+++||+| |+ ...++.+++.+. +++.+|++||+++... . ..
T Consensus 3 ~mri~~isDiH-g~----~~~l~~~l~~~~-------------~~d~ii~~GDl~~~g~------~------------~~ 46 (246)
T 3rqz_A 3 AMRILIISDVH-AN----LVALEAVLSDAG-------------RVDDIWSLGDIVGYGP------R------------PR 46 (246)
T ss_dssp CCCEEEECCCT-TC----HHHHHHHHHHHC-------------SCSEEEECSCCSSSSS------C------------HH
T ss_pred CcEEEEEeecC-CC----HHHHHHHHHhcc-------------CCCEEEECCCcCCCCC------C------------HH
Confidence 45799999999 22 345565555543 4689999999997421 0 11
Q ss_pred HHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 260 ELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 260 ~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
++-++|.++. .|..++||||-.
T Consensus 47 ~~~~~l~~~~---~~~~v~GNhD~~ 68 (246)
T 3rqz_A 47 ECVELVRVLA---PNISVIGNHDWA 68 (246)
T ss_dssp HHHHHHHHHC---SSEECCCHHHHH
T ss_pred HHHHHHHhcC---CCEEEeCchHHH
Confidence 2222344443 268999999976
No 29
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=92.03 E-value=0.41 Score=39.27 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=47.8
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCC----ceEEEecCCceEEEee--cccCCcc
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD----DHLVLEDESGRVKLGG--AELLPSA 138 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~----d~l~LED~sgRV~L~~--~~~~~~~ 138 (439)
.+|.+++++..+.|+|.|....+.|+ +.+ . ++. -.+.|.|+||+|++.+ +..+. .
T Consensus 6 ~~I~dL~~~~~v~v~g~V~~~~~~r~-----~~~------------~-~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~-~ 66 (105)
T 3dm3_A 6 YNIGELSPGMTATFEGEVISALPIKE-----FKR------------A-DGSIGKLKSFIVRDETGSIRVTLWDNLTDI-D 66 (105)
T ss_dssp ECGGGCCSSEEEEEEEEEEEEEEEEE-----EEC------------T-TSCEEEEEEEEEEETTEEEEEEEEGGGGGS-C
T ss_pred eEHHHCCCCCeEEEEEEEEECCCceE-----EEc------------C-CCCeeEEEEEEEECCCCcEEEEEECccccc-c
Confidence 46778888888999999987642211 111 0 011 1699999999999984 22122 7
Q ss_pred cccCeEEEEEeEEcC
Q 013632 139 YVTGIVVALHGKETS 153 (439)
Q Consensus 139 lvtG~Vvav~G~~~~ 153 (439)
+-+|.+|.+.|+...
T Consensus 67 l~~Gdvv~i~g~vk~ 81 (105)
T 3dm3_A 67 VGRGDYVRVRGYIRE 81 (105)
T ss_dssp CCTTCEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEE
Confidence 999999999997653
No 30
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=91.93 E-value=0.45 Score=47.97 Aligned_cols=142 Identities=12% Similarity=0.076 Sum_probs=77.5
Q ss_pred CCeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhH
Q 013632 179 EDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPI 258 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~ 258 (439)
...+++++||+|.+.. ..+ .++.+... ..+++.||++||.+.... ++.. + ....
T Consensus 118 ~~~~f~~igD~~~~~~-----~~~-~l~~~~~~---------~~~~D~vl~~GDl~y~~~--~~~~-----~----~~~~ 171 (424)
T 2qfp_A 118 VPYTFGLIGDLGQSFD-----SNT-TLSHYELS---------PKKGQTVLFVGDLSYADR--YPNH-----D----NVRW 171 (424)
T ss_dssp CCEEEEEECSCTTBHH-----HHH-HHHHHHTC---------SSCCCEEEECSCCSCGGG--SGGG-----C----THHH
T ss_pred CCeEEEEEEeCCCCCC-----hHH-HHHHHHhC---------CCCCCEEEEcCccccccc--cccc-----c----chHH
Confidence 4678999999998532 222 23333321 236899999999986521 1100 0 1123
Q ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCCCC-CCC-CCcccc--ccCCCCCcCCCceeecC-CcEEEeCCEEEEEecCCChHH
Q 013632 259 KELDILLTQIAAGVPLDIMPGPNDPANF-SLP-QQPLNR--CLFPGSATYNTFRSCTN-PHCFELDNVRFLGTSGQTIDD 333 (439)
Q Consensus 259 ~~ld~~L~~l~~~i~V~imPG~~Dp~~~-~lP-Qqpl~~--~lf~~~~~~~~~~~~tN-P~~~~i~g~~~l~~sGq~i~d 333 (439)
+.+..+++.+...+++..+|||||-... .+. +.++.. ..|..... ......| -+.|.+++++|++.....-
T Consensus 172 ~~~~~~l~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~--~~~~~~~~~ys~~~g~~~~i~Ldt~~~-- 247 (424)
T 2qfp_A 172 DTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYE--ASQSTSPFWYSIKRASAHIIVLSSYSA-- 247 (424)
T ss_dssp HHHHHHHHHHHTTSCEEECCCHHHHCCBGGGTBCSTTHHHHHHCCCCGG--GGTCSSTTSEEEEETTEEEEECCTTSC--
T ss_pred HHHHHHHHHHHhcCCeEeecCCcccccCCcccccccchhhhhhccCCcc--ccCCCCCcEEEEEECCEEEEEecCCcc--
Confidence 4556677777778999999999997632 011 111110 11110000 0001112 2368889999998865421
Q ss_pred HhhccCcCCHHHHHHHHHhc
Q 013632 334 LQKYSEANDQLEFMERTLRW 353 (439)
Q Consensus 334 i~k~~~~~~~l~~~~~~L~~ 353 (439)
+......++.++..|+.
T Consensus 248 ---~~~~~~Q~~WL~~~L~~ 264 (424)
T 2qfp_A 248 ---YGRGTPQYTWLKKELRK 264 (424)
T ss_dssp ---CSTTSHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHhh
Confidence 11123456778877765
No 31
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=91.34 E-value=0.2 Score=47.53 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=43.4
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
..+|+++||+| |. ...++.+++.+... ...+.+|++||.++.... ..+
T Consensus 18 ~~~i~visDiH-g~----~~~l~~~l~~~~~~----------~~~d~ii~~GD~vd~g~~-----------------~~~ 65 (262)
T 2qjc_A 18 TGRVIIVGDIH-GC----RAQLEDLLRAVSFK----------QGSDTLVAVGDLVNKGPD-----------------SFG 65 (262)
T ss_dssp CSCEEEECCCT-TC----HHHHHHHHHHHTCC----------TTTSEEEECSCCSSSSSC-----------------HHH
T ss_pred CCeEEEEeCCC-CC----HHHHHHHHHHHhcc----------CCCCEEEEecCCCCCCCC-----------------HHH
Confidence 45799999999 43 34666666665321 124799999999975210 112
Q ss_pred HHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 260 ELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 260 ~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
.++. |.++ +|.+++||||..
T Consensus 66 ~l~~-l~~~----~~~~v~GNHd~~ 85 (262)
T 2qjc_A 66 VVRL-LKRL----GAYSVLGNHDAK 85 (262)
T ss_dssp HHHH-HHHH----TCEECCCHHHHH
T ss_pred HHHH-HHHC----CCEEEeCcChHH
Confidence 2222 2222 799999999965
No 32
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=91.21 E-value=0.15 Score=46.77 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=42.6
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
..+|+++||+| |+ ...++.+++.+.- ..+++++|++||.++.... ..+
T Consensus 12 ~~~i~visDiH-g~----~~~l~~~l~~~~~----------~~~~d~~i~~GD~~~~g~~-----------------~~~ 59 (221)
T 1g5b_A 12 YRNIWVVGDLH-GC----YTNLMNKLDTIGF----------DNKKDLLISVGDLVDRGAE-----------------NVE 59 (221)
T ss_dssp CSCEEEECCCT-TC----HHHHHHHHHHHTC----------CTTTCEEEECSCCSSSSSC-----------------HHH
T ss_pred CceEEEEEcCC-CC----HHHHHHHHHHccC----------CCCCCEEEEeCCccCCCCC-----------------hHH
Confidence 45799999999 32 3456666665431 1246899999999975210 111
Q ss_pred HHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 260 ELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 260 ~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
.+ ..+. ..+|.+++||||-.
T Consensus 60 ~~----~~l~-~~~~~~v~GNhd~~ 79 (221)
T 1g5b_A 60 CL----ELIT-FPWFRAVRGNHEQM 79 (221)
T ss_dssp HH----GGGG-STTEEECCCHHHHH
T ss_pred HH----HHHh-cCCEEEEccCcHHH
Confidence 11 1222 24899999999964
No 33
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=90.98 E-value=1.1 Score=36.68 Aligned_cols=75 Identities=17% Similarity=0.363 Sum_probs=48.7
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEee--ccc-CCcccc
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG--AEL-LPSAYV 140 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~--~~~-~~~~lv 140 (439)
..+|.++++|+.+.++|.|....+.+ ++.... -....| -.+.|.|+||+|++.. ... ....|-
T Consensus 7 ~~~I~~L~~g~~v~i~~~V~~~~~~~-----~~~~k~-----G~~~~~----~~~~l~D~TG~I~~t~w~~~~~~~~~l~ 72 (115)
T 2k50_A 7 MDTISKLEEGAETPVTGRVMKISSPR-----TFTTRK-----GREGKL----ANVIIADDTGELRAVFWTENIKLLKKFR 72 (115)
T ss_dssp CCCTTTCCTTCEEEEEEEEEEECCCE-----ECCCTT-----SSCCEE----EEEEEEETTEEEEEEEETTGGGGGGTCC
T ss_pred eEEHHHCCCCCEeEEEEEEEECCCce-----EEEcCC-----CCEEEE----EEEEEEeCCCeEEEEEeCchhhhhhcCC
Confidence 45677888999999999998752221 000000 000111 2688999999999874 211 124789
Q ss_pred cCeEEEEEeEEc
Q 013632 141 TGIVVALHGKET 152 (439)
Q Consensus 141 tG~Vvav~G~~~ 152 (439)
+|.++.+.|...
T Consensus 73 ~G~vv~i~g~~v 84 (115)
T 2k50_A 73 EGDVIRIKDVNI 84 (115)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCEEEEEeeEE
Confidence 999999999983
No 34
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=90.38 E-value=1.1 Score=36.77 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=52.0
Q ss_pred CccceecccC-CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc-cCCcccc
Q 013632 63 PICTVLELEE-GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE-LLPSAYV 140 (439)
Q Consensus 63 ~v~~l~~~~~-~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~-~~~~~lv 140 (439)
+..+|.|+++ ++.+-++|.|....+ |+ ....| -.+.|.|+||+|++..=. -....+-
T Consensus 4 ~~~kI~dl~~~~~~v~v~~~V~~~~~--~~---------------~~~~~----~~~~l~DeTG~I~~t~W~~~~~~~~~ 62 (109)
T 2kbn_A 4 QLTKIVDIVENGQWANLKAKVIQLWE--NT---------------HESIS----QVGLLGDETGIIKFTIWKNAELPLLE 62 (109)
T ss_dssp CBCCTTTCCSTTCEEEEEEEEEEEEE--CC---------------CSSEE----EEEEEECTTCCEEEEEEGGGCCCCCC
T ss_pred CceEHHHCCCCCCcEEEEEEEEEeEc--CC---------------CCeEE----EEEEEECCCCeEEEEEECcccccccC
Confidence 3457888876 677889999987532 11 00111 248999999999998632 2557899
Q ss_pred cCeEEEEE-eEEcC-CCcEEE
Q 013632 141 TGIVVALH-GKETS-AGEFLV 159 (439)
Q Consensus 141 tG~Vvav~-G~~~~-~g~F~V 159 (439)
+|.+|-++ |.... +|.+.+
T Consensus 63 ~G~~V~i~n~~v~~~~G~~~L 83 (109)
T 2kbn_A 63 QGESYLLRSVVVGEYNDRFQV 83 (109)
T ss_dssp TTCEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEEECCEEEE
Confidence 99999999 55543 566554
No 35
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=90.32 E-value=0.67 Score=37.24 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=47.2
Q ss_pred ceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCc-ccccCeE
Q 013632 66 TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPS-AYVTGIV 144 (439)
Q Consensus 66 ~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~-~lvtG~V 144 (439)
+|.++++++.+.|+|.|....+.++ +.+... ...++ ..+.|.|+||+|++..=.-... .+-+|.+
T Consensus 4 kI~dl~~g~~v~i~~~V~~~~~~r~-----~~~~~G-----~~~~v----~~~~l~DeTG~I~~tlW~~~~~~~i~~Gdv 69 (97)
T 3e0e_A 4 KISELMPNLSGTINAEVVTAYPKKE-----FSRKDG-----TKGQL----KSLFLKDDTGSIRGTLWNELADFEVKKGDI 69 (97)
T ss_dssp CGGGCCTTEEEEEEEEEEEECCCEE-----EC---------CCEEE----EEEEEEETTEEEEEEEEGGGGGCCCCTTCE
T ss_pred EHHHCCCCCcEEEEEEEEECCCceE-----EEcCCC-----CeeEE----EEEEEECCCCcEEEEEECCccccccCCCCE
Confidence 5778888889999999987642221 111000 00011 2689999999999984211222 6899999
Q ss_pred EEEEeEEc
Q 013632 145 VALHGKET 152 (439)
Q Consensus 145 vav~G~~~ 152 (439)
|.+.|...
T Consensus 70 v~i~g~v~ 77 (97)
T 3e0e_A 70 AEVSGYVK 77 (97)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99999854
No 36
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=89.41 E-value=1.5 Score=36.33 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=48.5
Q ss_pred cceecccCCC-eEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCe
Q 013632 65 CTVLELEEGR-ECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143 (439)
Q Consensus 65 ~~l~~~~~~~-~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~ 143 (439)
.+|.++++++ .+-++|.|....+.+ ++.+ . ..+..| -.+.|.|+||+|++..=.-....|-+|.
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~~~~-----~~~~----k--~G~~~~----~~~~l~D~TG~I~~tlW~~~~~~~~~G~ 67 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEASEAR-----QIQT----K--NGVRTI----SEAIVGDETGRVKLTLWGKHAGSIKEGQ 67 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEECCCE-----EECC----T--TCCEEE----EEEEEEETTEEEEEEEEGGGTTCCCTTC
T ss_pred EEHHHCcCCCCcEEEEEEEEECCCCe-----eEEe----c--CCCEEE----EEEEEEeCCCEEEEEEECChhhcCCCCC
Confidence 3577787775 688999987652111 0000 0 000112 2689999999999875321335688999
Q ss_pred EEEEE-eEEcC-CCcEE
Q 013632 144 VVALH-GKETS-AGEFL 158 (439)
Q Consensus 144 Vvav~-G~~~~-~g~F~ 158 (439)
||.++ |.... +|.++
T Consensus 68 vv~i~~g~v~~~~g~~q 84 (119)
T 1o7i_A 68 VVKIENAWTTAFKGQVQ 84 (119)
T ss_dssp EEEEEEEEEEEETTEEE
T ss_pred EEEEEeEEEEEeCCEEE
Confidence 99999 77653 45433
No 37
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=87.74 E-value=1.3 Score=36.67 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=57.1
Q ss_pred CccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cCCcccc
Q 013632 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LLPSAYV 140 (439)
Q Consensus 63 ~v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~~~~lv 140 (439)
.+...+++..+..|.+=|.|.+.. ++|.|.+-|.||+|.+..+. +....+-
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~---------------------------~~d~Y~F~D~TG~I~VeId~~~w~g~~v~ 79 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERI---------------------------SDDLYVFKDASGTINVDIDHKRWNGVTVT 79 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEE---------------------------ETTEEEEEETTEEEEEECCGGGSTTCCCC
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEe---------------------------CCCeEEEECCCccEEEEEChhhcCCcccC
Confidence 456666788899999999999862 47889999999999998763 4557788
Q ss_pred cCeEEEEEeEEcCCC---cEEEEEE
Q 013632 141 TGIVVALHGKETSAG---EFLVLDV 162 (439)
Q Consensus 141 tG~Vvav~G~~~~~g---~F~V~di 162 (439)
++.-|=+.|.+..+. ...|+.|
T Consensus 80 p~~~Vri~GevDkd~~~~eIdV~~i 104 (109)
T 1nnx_A 80 PKDTVEIQGEVDKDWNSVEIDVKQI 104 (109)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCceEEEEEEE
Confidence 999999999997544 2455544
No 38
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=85.94 E-value=2.4 Score=34.03 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=43.0
Q ss_pred ceEEEecC---CceEEEeecccCCcccccCeEEEEEeEEcC-CCcEEEEEEe
Q 013632 116 DHLVLEDE---SGRVKLGGAELLPSAYVTGIVVALHGKETS-AGEFLVLDVL 163 (439)
Q Consensus 116 d~l~LED~---sgRV~L~~~~~~~~~lvtG~Vvav~G~~~~-~g~F~V~di~ 163 (439)
-...|.|. ...|++.-..+-+..|-.|+=|-+.|++.+ +|.|.+++++
T Consensus 31 v~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~~g~F~A~evL 82 (94)
T 2kct_A 31 VRFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPGEDTFKARTLM 82 (94)
T ss_dssp EEEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTTCSEEEEEEEE
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCCCCEEEEeEEE
Confidence 47888888 899999888778899999999999999987 8999999987
No 39
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=84.84 E-value=2.6 Score=34.29 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=48.2
Q ss_pred cceecccCCCe-EEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCe
Q 013632 65 CTVLELEEGRE-CVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGI 143 (439)
Q Consensus 65 ~~l~~~~~~~~-~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~ 143 (439)
.+|.|++++.. +.++|.|....+.+ + .++. ....| -.+.|.|+||+|++..= +.. |-+|.
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~~~~-~-----~k~G------~~~~v----~~~~l~DeTG~I~~tlW--~~~-l~~Gd 64 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIHKKE-Y-----ESDG------TTKSV----YQGYIEDDTARIRISSF--GKQ-LQDSD 64 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEEEEE-E-----EETT------EEEEE----EEEEEECSSCEEEEEEE--SSC-CCTTE
T ss_pred EEHHHcCCCCceEEEEEEEEEccccc-c-----ccCC------CeeEE----EEEEEEcCCCeEEEEEE--cCc-cCCCC
Confidence 46788888766 78899998753211 0 0000 00012 16899999999999763 223 99999
Q ss_pred EEEEE-eEEcC-CCcEEE
Q 013632 144 VVALH-GKETS-AGEFLV 159 (439)
Q Consensus 144 Vvav~-G~~~~-~g~F~V 159 (439)
+|-++ |.... +|.+++
T Consensus 65 vv~i~ng~v~~~~g~~~L 82 (106)
T 2k75_A 65 VVRIDNARVAQFNGYLSL 82 (106)
T ss_dssp EEEEEEEEEEEETTEEEE
T ss_pred EEEEEeeEEeEECCEEEE
Confidence 99999 66532 455444
No 40
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=83.65 E-value=1.4 Score=42.14 Aligned_cols=68 Identities=10% Similarity=0.170 Sum_probs=42.0
Q ss_pred EEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHHH
Q 013632 182 YVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKEL 261 (439)
Q Consensus 182 ~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 261 (439)
+|+++||+|- . ...++.+++.+.- ....+.+|++||.++.... ..+.+
T Consensus 2 ~i~vigDiHG-~----~~~l~~ll~~~~~----------~~~~d~~v~lGD~vdrG~~-----------------s~~~l 49 (280)
T 2dfj_A 2 ATYLIGDVHG-C----YDELIALLHKVEF----------TPGKDTLWLTGDLVARGPG-----------------SLDVL 49 (280)
T ss_dssp CEEEECCCCS-C----HHHHHHHHHHTTC----------CTTTCEEEECSCCSSSSSC-----------------HHHHH
T ss_pred eEEEEecCCC-C----HHHHHHHHHHhCC----------CCCCCEEEEeCCcCCCCCc-----------------cHHHH
Confidence 4789999993 2 3455555554321 1245899999999985210 12223
Q ss_pred HHHHHhhcCCCcEEEcCCCCCCC
Q 013632 262 DILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 262 d~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
+ +|.+++. ++.++.||||-.
T Consensus 50 ~-~l~~l~~--~~~~v~GNHe~~ 69 (280)
T 2dfj_A 50 R-YVKSLGD--SVRLVLGNHDLH 69 (280)
T ss_dssp H-HHHHTGG--GEEECCCHHHHH
T ss_pred H-HHHhCCC--ceEEEECCCcHH
Confidence 2 3334433 799999999954
No 41
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=80.14 E-value=5.4 Score=34.21 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=55.7
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEec-CCceEEEeecccCCcccccCeEEEEEeE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLED-ESGRVKLGGAELLPSAYVTGIVVALHGK 150 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED-~sgRV~L~~~~~~~~~lvtG~Vvav~G~ 150 (439)
.++.+-|-|+|..-+ +.+. + .+..-...|.| ....|++.-..+-+..|-.|.=|-+.|+
T Consensus 31 ~g~~iRvgG~V~~GS---------v~r~------~-----~~~~v~F~vtD~~~~~v~V~Y~GilPDlFrEGqgVVa~G~ 90 (136)
T 1j6q_A 31 AGQRIRVGGMVTVGS---------MVRD------P-----NSLHVQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGV 90 (136)
T ss_dssp TTCEEEEEEEECTTC---------CEEC------T-----TSSCEEEEEECTTCCCEEEEECSCCTTSCCSSSEEEEEEE
T ss_pred CCCEEEEeEEEeCCc---------EEec------C-----CCCEEEEEEEcCCCCEEEEEECCCCCccccCCCeEEEEEE
Confidence 467888999997531 1010 0 01234789999 7889999888778899999999999999
Q ss_pred EcCCCcEEEEEEe
Q 013632 151 ETSAGEFLVLDVL 163 (439)
Q Consensus 151 ~~~~g~F~V~di~ 163 (439)
+.++|.|.+++|+
T Consensus 91 l~~~g~F~A~eVL 103 (136)
T 1j6q_A 91 LGEDGKLAATEVL 103 (136)
T ss_dssp ECSTTSEEEEEEE
T ss_pred ECCCCeEEEEEEE
Confidence 9889999999988
No 42
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=79.69 E-value=5.7 Score=40.43 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=37.9
Q ss_pred CCCcEEEeCCcCccceEEEecCCCCcEEEEecCCCCCC----CeEEEEECCCCCEEEEEeee
Q 013632 379 SCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSET----GVAVVVNLKNLECHTLSFGT 436 (439)
Q Consensus 379 ~~P~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~t----~~~vlvnl~tl~~~~v~f~~ 436 (439)
.-.++++.||++.-+...+. .+++-+++.+-|.++.+ |.++.|+=++++|+...|..
T Consensus 396 ~~~~~iir~H~~~~~g~~~~-~~~~~~tvfsa~~y~~~~~n~~~~~~~~~~~~~~~~~~~~~ 456 (477)
T 1wao_1 396 NNLDYIIRSHEVKAEGYEVA-HGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTA 456 (477)
T ss_dssp TTCCEEEECCSCCTEEEEEE-GGGTEEEEBCCTTTTSSSCCEEEEEEEETTEEEEEEEEECC
T ss_pred cCCeEEEECCCCCcCCeEEe-cCCeEEEEeCCcccccCCCccEEEEEEECCCCeEEEEEEeC
Confidence 34789999999865433332 23456678888988653 34444544678899888865
No 43
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=78.39 E-value=0.87 Score=45.07 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=50.2
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
.-+++.++|.+.|... .....+.|.+++.. .+++.+|+.||.+.. ++..... ..-.+
T Consensus 3 ~l~f~~igD~g~g~~~-q~~va~~m~~~~~~-----------~~pd~vl~~GD~~y~--G~~~~~d---------~~~~~ 59 (342)
T 3tgh_A 3 QLRFASLGDWGKDTKG-QILNAKYFKQFIKN-----------ERVTFIVSPGSNFID--GVKGLND---------PAWKN 59 (342)
T ss_dssp CEEEEECCSCBSCCHH-HHHHHHHHHHHHHH-----------TTCCEEEECSCSBTT--CCCSTTC---------THHHH
T ss_pred eEEEEEEecCCCCCch-HHHHHHHHHHHHhh-----------cCCCEEEECCCcccC--CCCcCcc---------HHHHH
Confidence 5679999999987532 13345556666542 578999999998864 2110000 00112
Q ss_pred HHHHHHHhh--cCCCcEEEcCCCCCCCC
Q 013632 260 ELDILLTQI--AAGVPLDIMPGPNDPAN 285 (439)
Q Consensus 260 ~ld~~L~~l--~~~i~V~imPG~~Dp~~ 285 (439)
.+..+++.+ ...+++..+|||||-..
T Consensus 60 ~f~~~~~~~~~~~~~P~~~vlGNHD~~~ 87 (342)
T 3tgh_A 60 LYEDVYSEEKGDMYMPFFTVLGTRDWTG 87 (342)
T ss_dssp HTTTTSCCGGGTTCSEEEECCCHHHHTS
T ss_pred HHHHHhhhhhhhhCCCEEEeCCCCccCC
Confidence 233333322 34689999999999764
No 44
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=77.02 E-value=3.1 Score=35.65 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=55.7
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccccCeEEEEEeEE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKE 151 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lvtG~Vvav~G~~ 151 (439)
.++.+-|-|+|..-+ +.++ + .+..-...|.|....|++.-..+-+..|-.|+=|-+.|++
T Consensus 27 ~g~~iRvgG~V~~GS---------v~r~------~-----~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVa~G~l 86 (136)
T 1sr3_A 27 VGQRLRVGGMVMPGS---------VQRD------P-----NSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGEL 86 (136)
T ss_dssp TTSEEEEEEEECTTT---------CEEC------S-----SSSEEEEEEECSSCEEEEEEESCCCTTCCTTSEEEEEEEE
T ss_pred CCCEEEEeeEEeCCc---------EEEc------C-----CCCEEEEEEEeCCcEEEEEECCCCCccccCCCeEEEEEEE
Confidence 467888999997531 1110 0 0113478899999999998887788999999999999999
Q ss_pred cCCCcEEEEEEe
Q 013632 152 TSAGEFLVLDVL 163 (439)
Q Consensus 152 ~~~g~F~V~di~ 163 (439)
.++|.|.+++|+
T Consensus 87 ~~~g~F~A~eVL 98 (136)
T 1sr3_A 87 EKGNHILAKEVL 98 (136)
T ss_dssp CSSSEEEESSCB
T ss_pred CCCCeEEEEEEE
Confidence 888999999987
No 45
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=76.35 E-value=7.2 Score=37.89 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=32.1
Q ss_pred cEEEeCCcCccceEEEecCCCCcEEEEecCCCCC--CCeEEEEEC-CCCCEEEEEeee
Q 013632 382 HVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSE--TGVAVVVNL-KNLECHTLSFGT 436 (439)
Q Consensus 382 ~V~~~Gn~~~f~~~~~~~~~~~~~~lv~vP~F~~--t~~~vlvnl-~tl~~~~v~f~~ 436 (439)
+.++-|||..-+...+. .+++-+.+.+-|.++. ...+.++.+ ++++++...|..
T Consensus 235 ~~iir~Hq~~~~G~~~~-~~~~~iTvfSa~ny~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (309)
T 2ie4_C 235 TLVSRAHQLVMEGYNWC-HDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDP 291 (309)
T ss_dssp SEEEECCSCCTEEEEEE-TTTTEEEECCCSSGGGTSCCEEEEEEECTTCCEEEEEECC
T ss_pred eEEEecCcceeCCEEEe-cCCeEEEEECCcccccCCCCeEEEEEECCCCcEeEEEEeC
Confidence 56778888754322222 2345556777777753 234444444 568999888864
No 46
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=68.66 E-value=12 Score=36.64 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=31.4
Q ss_pred cEEEeCCcCccc-eEEEecCCCCcEEEEecCCCCC----CCeEEEEECCCCCEEEEEeee
Q 013632 382 HVYFAGNQQKFE-TRLLKGSDRQLVRLVCIPKFSE----TGVAVVVNLKNLECHTLSFGT 436 (439)
Q Consensus 382 ~V~~~Gn~~~f~-~~~~~~~~~~~~~lv~vP~F~~----t~~~vlvnl~tl~~~~v~f~~ 436 (439)
+..+-|||...+ .+.. .+++-+.+.+-|.++. .|.++.|| +++.|+...|..
T Consensus 242 ~liir~Hq~v~~Gy~~~--~~~~lvTvfSapnY~~~~~N~ga~l~i~-~~~~~~~~~~~~ 298 (330)
T 1fjm_A 242 DLICRAHQVVEDGYEFF--AKRQLVTLFSAPNYCGEFDNAGAMMSVD-ETLMCSFQILKP 298 (330)
T ss_dssp SEEEECCSCCTTSEEEE--TTTTEEEEBCCTTCCSSSCCCEEEEEEC-TTCCEEEEEECC
T ss_pred ceEecccccccCCeEEc--cCCeEEEEeCCcccccCCCCcEEEEEEC-CCCcEeEEEecC
Confidence 667778887653 3333 2345556777787753 33334443 568888887754
No 47
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=67.97 E-value=13 Score=31.39 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=41.3
Q ss_pred CeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeec---c----cCCcccccCeEEE
Q 013632 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGA---E----LLPSAYVTGIVVA 146 (439)
Q Consensus 74 ~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~---~----~~~~~lvtG~Vva 146 (439)
..+.+||+|....+.+ . .-.+.|+|.||.|....= . .+...+-.|.+|-
T Consensus 37 ~~V~iVG~V~~~~~~~--------------------~----~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVr 92 (136)
T 4gop_B 37 GQLTFVAVVRNISRNA--------------------T----NVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVR 92 (136)
T ss_dssp CEEEEEEEEEEEEECS--------------------S----EEEEEEECSSCEEEEEEECC--------CCSCCTTCEEE
T ss_pred EEEEEEEEEEEEEecC--------------------C----eEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEE
Confidence 4788999998762111 1 237999999999877521 1 1246789999999
Q ss_pred EEeEEcC-CCc
Q 013632 147 LHGKETS-AGE 156 (439)
Q Consensus 147 v~G~~~~-~g~ 156 (439)
|.|.... +|.
T Consensus 93 V~G~v~~f~g~ 103 (136)
T 4gop_B 93 VLGTLKSFQNR 103 (136)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEEeCCE
Confidence 9999864 454
No 48
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=67.31 E-value=9.4 Score=37.37 Aligned_cols=83 Identities=19% Similarity=0.152 Sum_probs=44.2
Q ss_pred CeEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHH
Q 013632 180 DKYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIK 259 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (439)
..+|+++||+| |. ...++.+++.+ |... .+.......+.+|++||.++.... ..+.+.
T Consensus 70 ~~~i~vigDiH-G~----~~~l~~ll~~~-~~~~--~~~~~~~~~d~~v~lGD~vdrG~~--------------s~evl~ 127 (342)
T 2z72_A 70 IKKVVALSDVH-GQ----YDVLLTLLKKQ-KIID--SDGNWAFGEGHMVMTGDIFDRGHQ--------------VNEVLW 127 (342)
T ss_dssp CCEEEEECCCT-TC----HHHHHHHHHHT-TSBC--TTSCBCCTTCEEEECSCCSSSSSC--------------HHHHHH
T ss_pred CCCEEEEECCC-CC----HHHHHHHHHhc-CCCc--ccccccCCCCEEEEECCCcCCCCC--------------HHHHHH
Confidence 56799999999 33 23444444432 2111 000111246899999999985310 012222
Q ss_pred HHHHHHHh-hcCCCcEEEcCCCCCCC
Q 013632 260 ELDILLTQ-IAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 260 ~ld~~L~~-l~~~i~V~imPG~~Dp~ 284 (439)
.+-.+-.+ .....+|.++.||||-.
T Consensus 128 ~l~~l~~~~~~~~~~v~~v~GNHE~~ 153 (342)
T 2z72_A 128 FMYQLDQQARDAGGMVHLLMGNHEQM 153 (342)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEecCCcHH
Confidence 22222110 01234799999999974
No 49
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=65.19 E-value=13 Score=31.13 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=41.5
Q ss_pred CeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCc-eEEEeec---c---cCCcccccCeEEE
Q 013632 74 RECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESG-RVKLGGA---E---LLPSAYVTGIVVA 146 (439)
Q Consensus 74 ~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sg-RV~L~~~---~---~~~~~lvtG~Vva 146 (439)
..+.++|+|....+. .. .-.+.|+|.|| +|....= . .....+-.|..|-
T Consensus 32 ~~V~iVG~V~~~~~~--------------------~~----~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVr 87 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKA--------------------PT----NIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVK 87 (132)
T ss_dssp CEEEEEEEEEEEEEC--------------------SS----EEEEEEECSSSSCEEEEEEC---------CCCCTTCEEE
T ss_pred EEEEEEEEEEEEEEc--------------------CC----eEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEE
Confidence 468899999875211 11 23799999999 8988531 1 1246788999999
Q ss_pred EEeEEcC-CCcEE
Q 013632 147 LHGKETS-AGEFL 158 (439)
Q Consensus 147 v~G~~~~-~g~F~ 158 (439)
|.|.... +|.-.
T Consensus 88 V~G~l~~f~g~~q 100 (132)
T 3kdf_D 88 VAGHLRSFQNKKS 100 (132)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEEeECCEEE
Confidence 9999864 45533
No 50
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=61.68 E-value=21 Score=37.15 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=41.8
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
..|++++|+| |+ ...|..+++ +.|. ....++|+.||.||... ...+.
T Consensus 83 ~pI~VIGDIH-Gq----~~dL~~LL~-~~g~----------p~~d~yVFLGDyVDRGp-----------------~S~Ev 129 (521)
T 1aui_A 83 APVTVCGDIH-GQ----FFDLMKLFE-VGGS----------PANTRYLFLGDYVDRGY-----------------FSIEC 129 (521)
T ss_dssp SSEEEECCCT-TC----HHHHHHHHH-HHCC----------TTTCCEEECSCCSSSSS-----------------CHHHH
T ss_pred cceeeccCCC-CC----HHHHHHHHH-hcCC----------CCcceEEEcCCcCCCCC-----------------CHHHH
Confidence 4588999999 22 345555555 3332 22478999999998631 01223
Q ss_pred HHHHHH-hhcCCCcEEEcCCCCCCC
Q 013632 261 LDILLT-QIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 261 ld~~L~-~l~~~i~V~imPG~~Dp~ 284 (439)
++-+++ .+..--.|.++-||||-.
T Consensus 130 l~lL~aLk~~~P~~v~lLRGNHE~~ 154 (521)
T 1aui_A 130 VLYLWALKILYPKTLFLLRGNHECR 154 (521)
T ss_dssp HHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred HHHHHHHhhhCCCeEEEecCCccHH
Confidence 332222 111122799999999965
No 51
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=56.36 E-value=46 Score=32.26 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=32.1
Q ss_pred cEEEeCCcCcc-ceEEEecCCCCcEEEEecCCCCC----CCeEEEEECCCCCEEEEEeee
Q 013632 382 HVYFAGNQQKF-ETRLLKGSDRQLVRLVCIPKFSE----TGVAVVVNLKNLECHTLSFGT 436 (439)
Q Consensus 382 ~V~~~Gn~~~f-~~~~~~~~~~~~~~lv~vP~F~~----t~~~vlvnl~tl~~~~v~f~~ 436 (439)
+.++-|||..- |.+... +++-+.+.|-|.++. .|.++.++=.+++++...|..
T Consensus 246 ~~iiR~Hq~~~~Gy~~~~--~~~~iTvfSapnY~~~~~N~~a~~~~~~~~~~~~~~~f~~ 303 (315)
T 3h63_A 246 DYIIRSHEVKAEGYEVAH--GGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTA 303 (315)
T ss_dssp SEEEECCSCCTTSEEEEG--GGTEEEECCCTTGGGTSCCCEEEEEEETTEEEEEEEEECC
T ss_pred cEEEEeceeecCCeEEec--CCeEEEEECCcccCCCCCccEEEEEEECCCCeEeeEEEec
Confidence 45567787643 343332 334567888888753 334444554678888888875
No 52
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=55.78 E-value=38 Score=27.79 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=41.1
Q ss_pred cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecC-CceEEEeecccCCcccccCeEEEEEe
Q 013632 71 EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE-SGRVKLGGAELLPSAYVTGIVVALHG 149 (439)
Q Consensus 71 ~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~-sgRV~L~~~~~~~~~lvtG~Vvav~G 149 (439)
-.|+.+.+||.|.+. +.+.+.|+.. .|.|.+.++ ....+-.|-++=|.|
T Consensus 16 ~~g~~VrivGkV~~~----------------------------~g~~~~l~s~d~~~Vtv~l~--~~~~~~~~~~vEViG 65 (114)
T 4gop_A 16 YVGQTVRIVGKVHKV----------------------------TGNTLLMQTSDLGNVEIAMT--PDSDVSSSTFVEVTG 65 (114)
T ss_dssp GTTSEEEEEEEEEEE----------------------------ETTEEEEECTTSCEEEEECC--SSCCGGGCSEEEEEE
T ss_pred hCCCeEEEEEEEeee----------------------------CCCEEEEEeCCCCEEEEEeC--CCCCcccCcEEEEEE
Confidence 358899999999875 2357888874 678888876 334455788999999
Q ss_pred EEcCC
Q 013632 150 KETSA 154 (439)
Q Consensus 150 ~~~~~ 154 (439)
+..++
T Consensus 66 ~V~~~ 70 (114)
T 4gop_A 66 KVSDA 70 (114)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 99876
No 53
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=55.30 E-value=47 Score=34.43 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=46.3
Q ss_pred CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cC-------CcccccCe
Q 013632 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LL-------PSAYVTGI 143 (439)
Q Consensus 73 ~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~-------~~~lvtG~ 143 (439)
|+++.|-|.|... +.. ++---+.|-|.+|+|.+..+. +. ...+-.|.
T Consensus 64 ~~~V~v~Gwv~~~------------R~~------------gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~ 119 (504)
T 1e1o_A 64 NIEVSVAGRMMTR------------RIM------------GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGD 119 (504)
T ss_dssp CCEEEEEEEEEEE------------EEE------------TTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTC
T ss_pred CCEEEEEEEEEEE------------ecC------------CCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCC
Confidence 7789999999864 211 112368889999999998642 11 13477899
Q ss_pred EEEEEeEEcC--CCcEE--EEEEe
Q 013632 144 VVALHGKETS--AGEFL--VLDVL 163 (439)
Q Consensus 144 Vvav~G~~~~--~g~F~--V~di~ 163 (439)
+|+|.|.+.. .|.++ |+++-
T Consensus 120 ~V~V~G~v~~~~~ge~ei~~~~i~ 143 (504)
T 1e1o_A 120 IIGARGTLFKTQTGELSIHCTELR 143 (504)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEEEEEecCCceEEEEEEEEE
Confidence 9999999864 45544 45654
No 54
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=54.26 E-value=43 Score=34.92 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCC-C----Cccceec----c------cCCCeEEEEEEEEecCCCCCChhHhhhhccC
Q 013632 37 SQIYFARLHLMRALLYSLVPNWKPH-L----PICTVLE----L------EEGRECVIIGTLYKHMKLKPSILDEYSKERS 101 (439)
Q Consensus 37 ~~iY~~Rl~~lr~~l~~~a~~k~~~-~----~v~~l~~----~------~~~~~~~viGtl~k~~~lkPsil~e~~~e~~ 101 (439)
...+..|.++|..+-..- . -||. . .+..+.+ + ..|+.+.|-|.|... +..
T Consensus 37 ~~~~~~r~~k~~~l~~~g-~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~------------R~~- 101 (529)
T 4ex5_A 37 NQIVAERRDKLRALRDQG-I-AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLK------------RVM- 101 (529)
T ss_dssp HHHHHHHHHHHHHHHHTS-C-SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEE------------EEE-
T ss_pred HHHHHHHHHHHHHHHHcC-C-CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEee------------ecC-
Confidence 345677888877665442 2 3442 1 1111211 1 126789999999864 111
Q ss_pred CCCCCCCCCCCCCCceEEEecCCceEEEeecc--cC------CcccccCeEEEEEeEEcC--CCcE--EEEEEee
Q 013632 102 TTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LL------PSAYVTGIVVALHGKETS--AGEF--LVLDVLD 164 (439)
Q Consensus 102 ~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~------~~~lvtG~Vvav~G~~~~--~g~F--~V~di~~ 164 (439)
++---+.|-|.+|+|.+..+. +. ...+-.|.+|+|.|.+.. .|.+ .|++|-.
T Consensus 102 -----------Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~v 165 (529)
T 4ex5_A 102 -----------GKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRL 165 (529)
T ss_dssp -----------TTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred -----------CCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence 011257899999999998753 11 134788999999999863 4654 4566543
No 55
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=51.34 E-value=1e+02 Score=25.44 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=61.4
Q ss_pred ecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecC-CceEEEeecccCCcccccCeEEE
Q 013632 68 LELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE-SGRVKLGGAELLPSAYVTGIVVA 146 (439)
Q Consensus 68 ~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~-sgRV~L~~~~~~~~~lvtG~Vva 146 (439)
+.--.|+.+.+||.|.+. -.+.+.+.|++. .|.|.+.++. ....-..| +|=
T Consensus 17 L~~fvgk~VrivGkV~~~--------------------------~~~g~~~~l~s~Dg~~Vtv~l~~-p~~~~l~~-~vE 68 (121)
T 3kdf_A 17 LAQFIDKPVCFVGRLEKI--------------------------HPTGKMFILSDGEGKNGTIELME-PLDEEISG-IVE 68 (121)
T ss_dssp GGGGTTCEEEEEEEEEEE--------------------------CTTSSEEEEECTTSCEEEEECSS-CCSSCCCS-EEE
T ss_pred HHhhCCCeEEEEEEEEEE--------------------------cCCCCEEEEEeCCCCEEEEEeCC-CCCcccCc-EEE
Confidence 333458999999999874 013557788874 6788988874 22222355 999
Q ss_pred EEeEEcCCCcEEEEEEe-eCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCCChhHHHHHHHHHhcc
Q 013632 147 LHGKETSAGEFLVLDVL-DAGLAPQKELPLNSGEDKYVVLVSGLNVGSGTSNPLQFQLLVDHITGH 211 (439)
Q Consensus 147 v~G~~~~~g~F~V~di~-~P~~~~~~~~~~~~~~~~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~ 211 (439)
|.|++.+++...+..++ |.+. . ..++...++.+++++++.
T Consensus 69 ViG~V~~~~tI~~~~~~~fg~~---~----------------------~~fD~~~yn~lv~l~~~~ 109 (121)
T 3kdf_A 69 VVGRVTAKATILCTSYVQFKED---S----------------------HPFDLGLYNEAVKIIHDF 109 (121)
T ss_dssp EEEEECTTSCEEEEEEEECCCS---S----------------------SCCCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCeEEEEEEEecCCC---C----------------------cccCHHHHHHHHHHHhcC
Confidence 99999887777777655 3211 0 135677888899888873
No 56
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=48.33 E-value=1.3e+02 Score=25.66 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=47.9
Q ss_pred ecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecC-CceEEEeecccCCcccccCeEEE
Q 013632 68 LELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDE-SGRVKLGGAELLPSAYVTGIVVA 146 (439)
Q Consensus 68 ~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~-sgRV~L~~~~~~~~~lvtG~Vva 146 (439)
+.--.|+.|.+||.|.+.. .+.+.+.|+.. .+.|.+.++. .... -.+-+|=
T Consensus 38 L~~fvGk~VriVGkV~~~~--------------------------~~G~~~~l~s~Dg~~VtV~l~~-pL~~-~~~~~VE 89 (142)
T 2pi2_E 38 LAQFIDKPVCFVGRLEKIH--------------------------PTGKMFILSDGEGKNGTIELME-PLDE-EISGIVE 89 (142)
T ss_dssp GGGSTTCEEEEEEEEEEEC--------------------------TTSSEEEEECTTSCEEEEECSS-CCSS-CCCSEEE
T ss_pred HHhhCCCEEEEEEEEeEEc--------------------------CCCCEEEEEeCCCcEEEEEeCC-CCCc-cCCCEEE
Confidence 3334589999999998741 13567788876 5688888763 1012 2366999
Q ss_pred EEeEEcCCCcEEEEEEe
Q 013632 147 LHGKETSAGEFLVLDVL 163 (439)
Q Consensus 147 v~G~~~~~g~F~V~di~ 163 (439)
|.|++.+++...+..++
T Consensus 90 ViG~V~~~~tI~~~~~~ 106 (142)
T 2pi2_E 90 VVGRVTAKATILCTSYV 106 (142)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred EEEEECCCCcEEEEEEE
Confidence 99999888888887765
No 57
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=48.05 E-value=38 Score=34.08 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=58.4
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEee-c---cc--CCcc
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG-A---EL--LPSA 138 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~-~---~~--~~~~ 138 (439)
.++.+++....++|-|+|... |. ...+++-.+-|+|+++++++.. . .+ -...
T Consensus 276 ~~i~~~~~~~~~~v~G~V~~~----P~------------------~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~ 333 (402)
T 3au7_A 276 EEVHRLENYRSYRLRGRVTLE----PY------------------DIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRL 333 (402)
T ss_dssp GGCSSCCTTCEEEEEEEEEEE----EE------------------EETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTT
T ss_pred ccccccccCceEEEEEEEecC----cE------------------eccCceEEEEEEcCCCEEEEEEEccchHHHHHHhc
Confidence 567888888999999999853 11 1123556788999999998864 2 12 2378
Q ss_pred cccCeEEEEEeEEcCCCcEEEEEEeeC
Q 013632 139 YVTGIVVALHGKETSAGEFLVLDVLDA 165 (439)
Q Consensus 139 lvtG~Vvav~G~~~~~g~F~V~di~~P 165 (439)
|.+|..|.|.|.+.. |.+.|+.+.--
T Consensus 334 L~~GD~V~v~G~v~~-gtLnvEk~~v~ 359 (402)
T 3au7_A 334 LRKGDVVEVYGSMKK-DTINLEKIQIV 359 (402)
T ss_dssp CCTTCEEEEEEEEET-TEEEEEEEEEE
T ss_pred CCCCCEEEEEEeecC-CEEEEEEEEEc
Confidence 999999999999864 69999987643
No 58
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=46.20 E-value=54 Score=30.86 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=30.6
Q ss_pred eEEEecCCc-eEEEee--cc----cCCcccccCeEEEEEeEEcC-CCcEEE
Q 013632 117 HLVLEDESG-RVKLGG--AE----LLPSAYVTGIVVALHGKETS-AGEFLV 159 (439)
Q Consensus 117 ~l~LED~sg-RV~L~~--~~----~~~~~lvtG~Vvav~G~~~~-~g~F~V 159 (439)
.+.|+|.|| +|.... +. .+...+..|.+|-|.|.+.. +|..++
T Consensus 91 ~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi 141 (270)
T 2pi2_A 91 VYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSL 141 (270)
T ss_dssp EEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEE
Confidence 799999999 887753 11 12467899999999999863 455433
No 59
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=44.90 E-value=57 Score=33.11 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=50.3
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccC--------
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL-------- 135 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~-------- 135 (439)
+..|..-..|+++.|-|.|... +.. ++=--+.|-|.+|.|.+..+.-.
T Consensus 7 ~~~l~~~~~g~~V~v~Gwv~~~------------R~~------------g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~ 62 (438)
T 3nem_A 7 SSEITEELNGQKVKVAGWVWEV------------KDL------------GGIKFLWIRDRDGIVQITAPKKKVDPELFKL 62 (438)
T ss_dssp GGGCCGGGTTCEEEEEEEEEEE------------EEE------------TTEEEEEEEETTEEEEEEEETTTSCHHHHHH
T ss_pred HHHcchhcCCCEEEEEEEEEEE------------ecC------------CCeEEEEEEECCeeEEEEEeCCcCCHHHHHH
Confidence 3444443358899999999864 111 11125779999999999875311
Q ss_pred CcccccCeEEEEEeEEcCC----CcE--EEEEEe
Q 013632 136 PSAYVTGIVVALHGKETSA----GEF--LVLDVL 163 (439)
Q Consensus 136 ~~~lvtG~Vvav~G~~~~~----g~F--~V~di~ 163 (439)
...+-.|.+|+|.|.+... |.+ .|+++-
T Consensus 63 ~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~ 96 (438)
T 3nem_A 63 IPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIV 96 (438)
T ss_dssp GGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEE
T ss_pred HhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEE
Confidence 2468889999999998743 444 445554
No 60
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=42.36 E-value=45 Score=38.41 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=43.0
Q ss_pred ccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEee-c-cc--CCcccccCeEE
Q 013632 70 LEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGG-A-EL--LPSAYVTGIVV 145 (439)
Q Consensus 70 ~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~-~-~~--~~~~lvtG~Vv 145 (439)
+..|+.+.|.|+|..... +++ ++++ .=..+.|||++|.+.+.. . .+ ....|.+|.++
T Consensus 1039 ~~~g~~v~v~G~v~~~~~-~~T---------------k~G~---~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~ 1099 (1220)
T 2hpi_A 1039 LPGKPKVLLSGMVEEVVR-KPT---------------RSGG---MMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPL 1099 (1220)
T ss_dssp SSSSCEEEEEEEECCC-------------------------------CEEEEETTEEEEEC-------------CTTCEE
T ss_pred ccCCCeEEEEEEEEEEEE-eec---------------CCCC---eEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEE
Confidence 346778999999986421 000 0000 012689999999999873 2 22 24679999999
Q ss_pred EEEeEEcCCC--cEEEEEEe
Q 013632 146 ALHGKETSAG--EFLVLDVL 163 (439)
Q Consensus 146 av~G~~~~~g--~F~V~di~ 163 (439)
.|+|++...+ .+.++++.
T Consensus 1100 ~v~G~v~~~~~~~l~~~~i~ 1119 (1220)
T 2hpi_A 1100 LVLAEVEKGEELRVLAQAVW 1119 (1220)
T ss_dssp EEEEEEC-----CEEEEEEE
T ss_pred EEEEEEEECCCcEEEEeeee
Confidence 9999996443 46677775
No 61
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=42.34 E-value=95 Score=32.22 Aligned_cols=68 Identities=10% Similarity=0.197 Sum_probs=44.9
Q ss_pred CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--c------C--CcccccC
Q 013632 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--L------L--PSAYVTG 142 (439)
Q Consensus 73 ~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~------~--~~~lvtG 142 (439)
++++.|-|.|... +..+ + .---+.|-|.+|+|.+..+. + . ...+-.|
T Consensus 55 ~~~V~v~Grv~~~------------R~~g-------k----k~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~g 111 (521)
T 3bju_A 55 DITLKVAGRIHAK------------RASG-------G----KLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRG 111 (521)
T ss_dssp SCCEEEEEEEEEE------------EESS-------S----SEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTT
T ss_pred CcEEEEEEEEEEE------------ecCC-------C----CcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCC
Confidence 5679999999864 1110 0 11257899999999998642 1 0 1246789
Q ss_pred eEEEEEeEEcC--CCcE--EEEEEe
Q 013632 143 IVVALHGKETS--AGEF--LVLDVL 163 (439)
Q Consensus 143 ~Vvav~G~~~~--~g~F--~V~di~ 163 (439)
.+|+|.|.+.. .|.+ .|++|-
T Consensus 112 d~V~V~G~v~~t~~ge~ei~~~~i~ 136 (521)
T 3bju_A 112 DIIGVQGNPGKTKKGELSIIPYEIT 136 (521)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CEEEEEEEEEecCCCCEEEEEeEEE
Confidence 99999999864 4554 445554
No 62
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=41.96 E-value=19 Score=33.13 Aligned_cols=77 Identities=16% Similarity=0.065 Sum_probs=45.0
Q ss_pred CccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCce-EEEee--cccCCccc
Q 013632 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGR-VKLGG--AELLPSAY 139 (439)
Q Consensus 63 ~v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgR-V~L~~--~~~~~~~l 139 (439)
++..|.++..+..+-|||.|....+++. +.... ..+ ...--.+.|.|++|+ |++.. ........
T Consensus 128 ~i~~i~~~~~~~~vDViG~V~~v~~~~~-----~~~k~-------~g~-~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~ 194 (246)
T 1jmc_A 128 GIDDLENKSKDSLVDIIGICKSYEDATK-----ITVRS-------NNR-EVAKRNIYLMDTSGKVVTATLWGEDADKFDG 194 (246)
T ss_dssp CGGGGGGSCTTCEEEEEEEEEEECCCEE-----EEETT-------TTE-EEEEEEEEEECTTCCEEEEEEEHHHHHHCCC
T ss_pred EHHHHhcccCCCceeEEEEEEEecCeEE-----EEEec-------CCC-ccEEEEEEEECCCCCEEEEEEEchhhhhccc
Confidence 5566666556777889999987643221 11000 000 001226899999996 88764 21122234
Q ss_pred ccCeEEEEEeEEc
Q 013632 140 VTGIVVALHGKET 152 (439)
Q Consensus 140 vtG~Vvav~G~~~ 152 (439)
-.|.||+++|...
T Consensus 195 ~~~~vv~i~~~~v 207 (246)
T 1jmc_A 195 SRQPVLAIKGARV 207 (246)
T ss_dssp TTCCEEEEEEEEE
T ss_pred CCCCEEEEEEEEE
Confidence 6788999998865
No 63
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=41.76 E-value=1.2e+02 Score=29.48 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=32.8
Q ss_pred cEEEeCCcCc-cceEEEecCCCCcEEEEecCCCCC--CCeEEE--EECC----------CCCEEEEEeee
Q 013632 382 HVYFAGNQQK-FETRLLKGSDRQLVRLVCIPKFSE--TGVAVV--VNLK----------NLECHTLSFGT 436 (439)
Q Consensus 382 ~V~~~Gn~~~-f~~~~~~~~~~~~~~lv~vP~F~~--t~~~vl--vnl~----------tl~~~~v~f~~ 436 (439)
+.++-|||.. -|.+... +++-+.|.|-|.++. ...+.+ |+-. +++++...|..
T Consensus 250 ~~IiR~Hq~~~~Gy~~~~--~~~liTvfSapnYc~~~~N~~a~~~i~~~~~~~~~~~~~~~~~~~~~f~~ 317 (335)
T 3icf_A 250 RKIFRSHELRMGGVQFEQ--KGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRNDDQNLIIETFEA 317 (335)
T ss_dssp SEEEECSSCCTEEEEEEG--GGTEEEECCCTTGGGTSCCEEEEEEECTTCCCCBTTTBCCTTEEEEEECC
T ss_pred eEEEEcCceecCeEEEec--CCcEEEEECCcccCCCCCCceEEEEEecccccccccccccCceeEEEEec
Confidence 5667788864 3444332 345567888888753 234444 4432 68999999975
No 64
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=33.64 E-value=81 Score=31.75 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=41.7
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccCCcccc-cCeEEEEEeE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV-TGIVVALHGK 150 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lv-tG~Vvav~G~ 150 (439)
.|+++.|-|.|... +.. ++=--+.|-|.+|.|++..+. ..+- .|.+|+|.|.
T Consensus 12 ~~~~V~v~Gwv~~~------------R~~------------g~~~F~~lrD~~g~iQ~v~~~---~~l~~~~~~v~v~G~ 64 (422)
T 1n9w_A 12 VGQEVELLGFLHWR------------RDL------------GRIQFLLLRDRSGVVQVVTGG---LKLPLPESALRVRGL 64 (422)
T ss_dssp TTSEEEEEEEEEEE------------EEC------------SSEEEEEEEETTEEEEEEEES---CCCCCTTCEEEEEEE
T ss_pred CCCEEEEEEEEEEE------------ecC------------CCeEEEEEEECCEEEEEEEEc---cccCCCCCEEEEEEE
Confidence 48899999999865 111 011258889999999999864 5566 7999999999
Q ss_pred EcC
Q 013632 151 ETS 153 (439)
Q Consensus 151 ~~~ 153 (439)
+..
T Consensus 65 v~~ 67 (422)
T 1n9w_A 65 VVE 67 (422)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 65
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=33.06 E-value=99 Score=31.83 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cC------CcccccCeE
Q 013632 73 GRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LL------PSAYVTGIV 144 (439)
Q Consensus 73 ~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~------~~~lvtG~V 144 (439)
|+++.|-|.|... +.. ++---+.|-|.+|+|.+..+. +. ...+-.|.+
T Consensus 56 ~~~V~v~Gwv~~~------------R~~------------gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~ 111 (493)
T 3a74_A 56 QIEVAVAGRIMTK------------RGM------------GKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDI 111 (493)
T ss_dssp CCEEEEEEEEEEE------------EEE------------TTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCE
T ss_pred CCEEEEEEEEEEE------------ecC------------CCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCE
Confidence 7789999999864 211 112368889999999998642 11 135788999
Q ss_pred EEEEeEEcC--CCcE--EEEEEe
Q 013632 145 VALHGKETS--AGEF--LVLDVL 163 (439)
Q Consensus 145 vav~G~~~~--~g~F--~V~di~ 163 (439)
|+|.|.+.. .|.+ .|+++-
T Consensus 112 v~V~G~v~~~~~ge~ei~~~~i~ 134 (493)
T 3a74_A 112 VGVRGTMFKTKVGELSIKVSSYE 134 (493)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcEEEEEEEEE
Confidence 999999864 4554 445654
No 66
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=32.93 E-value=1.2e+02 Score=28.97 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=32.9
Q ss_pred cEEEeCCcCcc-ceEEEecCCCCcEEEEecCCCCC--CCeEEEEEC-CCCCEEEEEeee
Q 013632 382 HVYFAGNQQKF-ETRLLKGSDRQLVRLVCIPKFSE--TGVAVVVNL-KNLECHTLSFGT 436 (439)
Q Consensus 382 ~V~~~Gn~~~f-~~~~~~~~~~~~~~lv~vP~F~~--t~~~vlvnl-~tl~~~~v~f~~ 436 (439)
+.++-|||..- |.+.. .+++-+.+.|-|.++. ...+.++.+ ++|+|+...|..
T Consensus 241 ~~IiR~Hq~v~~Gy~~~--~~~~~iTvfSapnY~~~~~N~~a~l~~~~~~~~~~~~~~~ 297 (299)
T 3e7a_A 241 DLICRAHQVVEDGYEFF--AKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 297 (299)
T ss_dssp SEEEECCSCCTTSEEEE--TTTTEEEEBCCSSGGGTCCCCEEEEEECTTCCEEEEEECC
T ss_pred eEEEEcCeeeecceEEe--cCCeEEEEECCcccCCCCCccEEEEEECCCCcEEEEEecC
Confidence 45567888753 44433 2345567888888753 244455555 578998887753
No 67
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=31.66 E-value=1.3e+02 Score=30.32 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=41.0
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc-c-C---CcccccCeEEE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE-L-L---PSAYVTGIVVA 146 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~-~-~---~~~lvtG~Vva 146 (439)
.|+++.|-|.|... +..+. + =--+.|-|.+|.|.+..+. . . ...+-.|.+|+
T Consensus 10 ~~~~V~v~Gwv~~~------------R~~Gk-------~----~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~ 66 (435)
T 2xgt_A 10 RNERVCIKGWIHRM------------RRQGK-------S----LMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVE 66 (435)
T ss_dssp TTSEEEEEEEEEEE------------EECTT-------S----EEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEE
T ss_pred CCCEEEEEEEEEEe------------cccCC-------C----cEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEE
Confidence 47889999999865 21100 0 1258889999999998752 1 1 12477899999
Q ss_pred EEeEEcC
Q 013632 147 LHGKETS 153 (439)
Q Consensus 147 v~G~~~~ 153 (439)
|.|.+..
T Consensus 67 v~G~v~~ 73 (435)
T 2xgt_A 67 IYGAIKE 73 (435)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999753
No 68
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=31.44 E-value=84 Score=32.53 Aligned_cols=80 Identities=9% Similarity=-0.033 Sum_probs=43.7
Q ss_pred CCeEEEEEecCCCCCCC------------CChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcc
Q 013632 179 EDKYVVLVSGLNVGSGT------------SNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNL 246 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~~------------~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~ 246 (439)
....|+++||+|-.-.. .....+..+++-+..+ ..-.-++.+||.+++..-
T Consensus 28 ~~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~----------~~~~l~l~~GD~~~gs~~------- 90 (552)
T 2z1a_A 28 FTLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWAR----------AKNPLFLDAGDVFQGTLY------- 90 (552)
T ss_dssp CEEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHH----------SSSEEEEECSCCSSSSHH-------
T ss_pred eeEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCcHH-------
Confidence 46789999999943111 1123444444444431 112478899999986310
Q ss_pred cccchhhhhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 247 ASKDQSRLFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 247 ~~~~~~~~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
.... .-+.+-++|..+... ...+||||--
T Consensus 91 -----~~~~-~~~~~~~~ln~lg~d---~~~lGNHEfd 119 (552)
T 2z1a_A 91 -----FNQY-RGLADRYFMHRLRYR---AMALGNHEFD 119 (552)
T ss_dssp -----HHHH-TTHHHHHHHHHTTCC---EEECCGGGGT
T ss_pred -----HHHh-CCcHHHHHHHhcCCC---cccccccccc
Confidence 0011 112334466666432 5678999964
No 69
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=29.32 E-value=1.6e+02 Score=28.92 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=40.3
Q ss_pred eEEEEEecCCCCCCCCChhHHHHHHHHHhccCCCcccccccCCceEEEEeccCCCcCCCCCCCCcccccchhhhhHhHHH
Q 013632 181 KYVVLVSGLNVGSGTSNPLQFQLLVDHITGHLGDEKEQGIAAEIVHVVIAGNSIEIPRGLLNGQNLASKDQSRLFEPIKE 260 (439)
Q Consensus 181 ~~i~~vSgl~lgs~~~~~~~~~~l~d~L~G~~g~~~~~~~~~~i~~lIiaGn~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (439)
..|++++|+|= +...+..+.+. .|. .....+|+.||.||... ...+.
T Consensus 70 ~pi~ViGDIHG-----~~~dL~~ll~~-~g~----------~~~~~~vfLGD~VDRG~-----------------~s~Ev 116 (357)
T 3ll8_A 70 APVTVCGDIHG-----QFFDLMKLFEV-GGS----------PANTRYLFLGDYVDRGY-----------------FSIEC 116 (357)
T ss_dssp SSEEEECCCTT-----CHHHHHHHHHH-HCC----------TTTCCEEECSCCSSSST-----------------THHHH
T ss_pred ccceeeccCCC-----CHHHHHHHHHh-cCC----------CCCcEEEECCCccCCCc-----------------ChHHH
Confidence 34889999884 12344444442 121 23368999999998631 12233
Q ss_pred HHHHHHh-hcCCCcEEEcCCCCCCC
Q 013632 261 LDILLTQ-IAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 261 ld~~L~~-l~~~i~V~imPG~~Dp~ 284 (439)
++-+++- +..--.|.++-||||-.
T Consensus 117 l~lL~~lk~~~p~~v~llrGNHE~~ 141 (357)
T 3ll8_A 117 VLYLWALKILYPKTLFLLRGNHECR 141 (357)
T ss_dssp HHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred HHHHHHhhhhcCCcEEEEeCchhhh
Confidence 3322221 11122699999999965
No 70
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=29.25 E-value=1.9e+02 Score=30.37 Aligned_cols=65 Identities=22% Similarity=0.156 Sum_probs=45.0
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccC-----Cccc
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL-----PSAY 139 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~-----~~~l 139 (439)
..|..-..|+++.|-|.|... +.+ ++---+.|-|.+|.|.+..+.-. ...+
T Consensus 8 ~~l~~~~~g~~V~l~GwV~~~------------R~~------------G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l 63 (580)
T 1l0w_A 8 GSLRETHVGEEVVLEGWVNRR------------RDL------------GGLIFLDLRDREGLVQLVAHPASPAYATAERV 63 (580)
T ss_dssp GGCCGGGTTCEEEEEEEEEEE------------EEC------------SSCEEEEEEETTEEEEEEECTTSTTHHHHTTC
T ss_pred HHhHHHhCCCEEEEEEEEEEE------------ecC------------CCeEEEEEEECCeeEEEEEeCChhHHHHHhcC
Confidence 334333358899999999865 211 11226888999999999875311 1457
Q ss_pred ccCeEEEEEeEEcC
Q 013632 140 VTGIVVALHGKETS 153 (439)
Q Consensus 140 vtG~Vvav~G~~~~ 153 (439)
-.|.+|+|.|++..
T Consensus 64 ~~e~~V~V~G~v~~ 77 (580)
T 1l0w_A 64 RPEWVVRAKGLVRL 77 (580)
T ss_dssp CTTCEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEc
Confidence 88999999999864
No 71
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=29.08 E-value=53 Score=33.11 Aligned_cols=77 Identities=22% Similarity=0.262 Sum_probs=44.5
Q ss_pred CccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCc-eEEEee--cc---cCC
Q 013632 63 PICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESG-RVKLGG--AE---LLP 136 (439)
Q Consensus 63 ~v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sg-RV~L~~--~~---~~~ 136 (439)
++..|.++..+..+-|||.|....+.+ ++.... ..+ ...--.+.|.|++| +|++.. +. ++.
T Consensus 123 ~i~~i~~~~~~~~vDViG~V~~v~~~~-----~i~~k~-------~g~-~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~ 189 (444)
T 4gop_C 123 RINELESVEANQQCDVIGILDSYGELS-----EIVSKA-------SQR-PVQKRELTLVDQGNRSVKLTLWGKTAETFPT 189 (444)
T ss_dssp CGGGGGGSCSSCCCBEEEEEEEECCCE-----EECCTT-------TCS-CEEEEEEEEECTTCBEEEEEEEHHHHHTSTT
T ss_pred CHHHHhccCCCCceEEEEEEEEcCCcE-----EEEEcc-------CCc-eeeEEEEEEEeCCCCEEEEEEEhhhhhhhhh
Confidence 556666655677777999998753211 111000 000 00123689999999 888874 21 121
Q ss_pred -cccccCeEEEEEeEEc
Q 013632 137 -SAYVTGIVVALHGKET 152 (439)
Q Consensus 137 -~~lvtG~Vvav~G~~~ 152 (439)
...-.|.||+++|...
T Consensus 190 ~~~~~~~~VV~i~~~kV 206 (444)
T 4gop_C 190 NAGVDEKPVLAFKGVKV 206 (444)
T ss_dssp STTSSSCCEEEEESCEE
T ss_pred hhccCCCCEEEEEeEEE
Confidence 1155789999998754
No 72
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=28.86 E-value=1.8e+02 Score=29.21 Aligned_cols=75 Identities=12% Similarity=0.160 Sum_probs=49.4
Q ss_pred cceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeeccc-C----Cccc
Q 013632 65 CTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL-L----PSAY 139 (439)
Q Consensus 65 ~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~-~----~~~l 139 (439)
..|.+-..|+++.|-|.|... +.. ++=--+.|.|.+|.|.+..+.- . ...+
T Consensus 8 ~~l~~~~~~~~V~v~Gwv~~~------------R~~------------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l 63 (429)
T 1wyd_A 8 ADVTPEYDGKEVIWAGWVHLL------------RDL------------GGKKFIILRDKTGLGQVVVDKNSSAFGISQEL 63 (429)
T ss_dssp TTCCGGGTTCEEEEEEEEEEE------------EEE------------TTEEEEEEEETTEEEEEEECTTSTTHHHHTTC
T ss_pred HHhhHHhCCCEEEEEEEEEEE------------ecC------------CCeEEEEEEECCeeEEEEEeCChHHHHHHHhC
Confidence 344333358899999999865 211 0112588899999999987521 1 1457
Q ss_pred ccCeEEEEEeEEcCC--C--c--EEEEEEe
Q 013632 140 VTGIVVALHGKETSA--G--E--FLVLDVL 163 (439)
Q Consensus 140 vtG~Vvav~G~~~~~--g--~--F~V~di~ 163 (439)
-.|.+|+|.|.+... | . ..|+++-
T Consensus 64 ~~~~~v~v~G~v~~~~~~~~~~el~~~~~~ 93 (429)
T 1wyd_A 64 TQESVIQVRGIVKADKRAPRGIELHAEEIT 93 (429)
T ss_dssp CTTCEEEEEEEEEECSSSGGGEEEEEEEEE
T ss_pred CCCCEEEEEEEEEecCCCCccEEEEEeEEE
Confidence 889999999998643 2 4 4455553
No 73
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=28.82 E-value=1.8e+02 Score=29.76 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=44.9
Q ss_pred ccceecc-cCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCC-ceEEEecCCceEEEeecc-----cC-
Q 013632 64 ICTVLEL-EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPD-DHLVLEDESGRVKLGGAE-----LL- 135 (439)
Q Consensus 64 v~~l~~~-~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~-d~l~LED~sgRV~L~~~~-----~~- 135 (439)
+..|..- ..|+++.|-|.|... +.. ++- --+.|-|.+|.|.+..+. +.
T Consensus 26 ~~~l~~~~~~g~~V~v~GwV~~~------------R~~------------g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~ 81 (487)
T 1eov_A 26 FVDLDEAKDSDKEVLFRARVHNT------------RQQ------------GATLAFLTLRQQASLIQGLVKANKEGTISK 81 (487)
T ss_dssp GGGCCTTTTTTCEEEEEEEEEEE------------EEC------------SSSEEEEEEEETTEEEEEEEECCSSSSSCH
T ss_pred HHHhcccccCCCEEEEEEEEEEe------------ecc------------CCccEEEEEEECCccEEEEEeccccccccH
Confidence 3444432 358899999999865 211 112 368889999999998752 11
Q ss_pred -----CcccccCeEEEEEeEEcC
Q 013632 136 -----PSAYVTGIVVALHGKETS 153 (439)
Q Consensus 136 -----~~~lvtG~Vvav~G~~~~ 153 (439)
...+-.|.+|+|.|++..
T Consensus 82 ~~~~~~~~l~~e~~V~V~G~v~~ 104 (487)
T 1eov_A 82 NMVKWAGSLNLESIVLVRGIVKK 104 (487)
T ss_dssp HHHHHHTTCCTTCEEEEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEEEEEEEe
Confidence 125788999999999864
No 74
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=26.66 E-value=1.5e+02 Score=31.20 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=44.2
Q ss_pred ceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeeccc------CCccc
Q 013632 66 TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAEL------LPSAY 139 (439)
Q Consensus 66 ~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~------~~~~l 139 (439)
.|..-..|+++.|-|.|... +.+ ++=--+.|-|.+|.|.+..+.- ....+
T Consensus 8 ~l~~~~~g~~V~l~GwV~~~------------R~~------------G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l 63 (585)
T 1c0a_A 8 QLRLSHVGQQVTLCGWVNRR------------RDL------------GSLIFIDMRDREGIVQVFFDPDRADALKLASEL 63 (585)
T ss_dssp GCCGGGTTCEEEEEEEEEEE------------EEC------------SSCEEEEEEETTEEEEEEECGGGHHHHHHHTTC
T ss_pred HHHHHhCCCEEEEEEEEEEE------------ecC------------CCcEEEEEEECCeeEEEEEeCCchHHHHHHhcC
Confidence 34333358899999999865 211 1123688899999999987531 11457
Q ss_pred ccCeEEEEEeEEc
Q 013632 140 VTGIVVALHGKET 152 (439)
Q Consensus 140 vtG~Vvav~G~~~ 152 (439)
-.|.+|+|.|++.
T Consensus 64 ~~e~~V~V~G~v~ 76 (585)
T 1c0a_A 64 RNEFCIQVTGTVR 76 (585)
T ss_dssp CTTCEEEEEEEEE
T ss_pred CCCCEEEEEeEEE
Confidence 8899999999985
No 75
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=26.45 E-value=3.1e+02 Score=25.05 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=30.7
Q ss_pred ceEEEecCCce---EEEeecc-------cCCcccccCeEEEEEeEEcCC-----------CcEEEEEEee
Q 013632 116 DHLVLEDESGR---VKLGGAE-------LLPSAYVTGIVVALHGKETSA-----------GEFLVLDVLD 164 (439)
Q Consensus 116 d~l~LED~sgR---V~L~~~~-------~~~~~lvtG~Vvav~G~~~~~-----------g~F~V~di~~ 164 (439)
..+.|-|.||. |.+..+. +.-.....|.+|-|+|.++.. ..+.|+++..
T Consensus 112 ~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~~~~~~~rei~ve~i~v 181 (220)
T 3kf8_A 112 VILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITV 181 (220)
T ss_dssp EEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEE
T ss_pred EEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccccccccceEEEEEEEEE
Confidence 36888899986 4443321 111224479999999999742 3466666554
No 76
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=26.31 E-value=1.6e+02 Score=29.83 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=41.3
Q ss_pred CCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cC----CcccccCeEE
Q 013632 72 EGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LL----PSAYVTGIVV 145 (439)
Q Consensus 72 ~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~----~~~lvtG~Vv 145 (439)
.|+++.|-|.|... +..+ + +=.-+.|-|.+|.|.+..+. +. ...+-.|.+|
T Consensus 29 ~g~~V~v~Gwv~~~------------R~~G--------k---~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V 85 (456)
T 3m4p_A 29 EGKLVTFKGWAYHI------------RKAR--------K---TLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSL 85 (456)
T ss_dssp CSSEEEEEEEEEEE------------ECCS--------S---SEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEE
T ss_pred CCCEEEEEEEEEEE------------ecCC--------C---ceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEE
Confidence 48899999999864 1110 0 01257899999999998753 11 1357889999
Q ss_pred EEEeEEc
Q 013632 146 ALHGKET 152 (439)
Q Consensus 146 av~G~~~ 152 (439)
+|.|.+.
T Consensus 86 ~V~G~v~ 92 (456)
T 3m4p_A 86 EITGRLN 92 (456)
T ss_dssp EEEEEEE
T ss_pred EEEeEEE
Confidence 9999985
No 77
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=23.95 E-value=2.4e+02 Score=29.83 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=44.9
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecccC--------
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELL-------- 135 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~~~-------- 135 (439)
+..|..-..|+++.|-|.|-.. + +...+.|-|.+|.|.+..+.-.
T Consensus 15 ~~~l~~~~~g~~V~l~GwV~~~------------R---------------~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~ 67 (617)
T 4ah6_A 15 CGELRSSHLGQEVTLCGWIQYR------------R---------------QNTFLVLRDFDGLVQVIIPQDESAASVKKI 67 (617)
T ss_dssp GGGCCGGGTTCEEEEEEEECCC------------C---------------TTTEEEEECSSCEEEEECCCSSSSHHHHHH
T ss_pred HHHhHHHhCCCEEEEEEEeeee------------c---------------CeEEEEEEeCCcCEEEEEeCCcCcHHHHHH
Confidence 3445444568899999999753 1 0137899999999999876311
Q ss_pred CcccccCeEEEEEeEEc
Q 013632 136 PSAYVTGIVVALHGKET 152 (439)
Q Consensus 136 ~~~lvtG~Vvav~G~~~ 152 (439)
...+-.|.+|+|.|++.
T Consensus 68 ~~~l~~e~~V~V~G~v~ 84 (617)
T 4ah6_A 68 LCEAPVESVVQVSGTVI 84 (617)
T ss_dssp HHHCCSSCEEEEEEEEE
T ss_pred HhcCCCCCEEEEEEEEE
Confidence 13577899999999985
No 78
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=23.48 E-value=87 Score=26.81 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=45.8
Q ss_pred ccceecccCCCe-EEEEEEEEecCCCCCChhHhhhhccCCCCC--CCCCCCCCCCceEEEecCCceEEEeecccCCcccc
Q 013632 64 ICTVLELEEGRE-CVIIGTLYKHMKLKPSILDEYSKERSTTPL--VKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYV 140 (439)
Q Consensus 64 v~~l~~~~~~~~-~~viGtl~k~~~lkPsil~e~~~e~~~~~~--~~~~~y~~~~d~l~LED~sgRV~L~~~~~~~~~lv 140 (439)
..+|.+++++.. +-+.|.|....+-+|= -+ .......+ +.+.. .=..+.+-|+||+|++..-.-....+-
T Consensus 16 ~~kI~dL~pg~~~v~l~~kVl~~~~v~~~--~~--~~R~dG~~~~~~r~~---~V~~~lVgDeTG~I~ftlW~e~~~~l~ 88 (145)
T 1wjj_A 16 FVKVEQLKPGTTGHTLTVKVIEANIVVPV--TR--KTRPASSLSRPSQPS---RIVECLIGDETGCILFTARNDQVDLMK 88 (145)
T ss_dssp SCCSTTCCTTCCCEEEEEEEEEEEECCSS--SS--CCSCSSCCSSCCCCC---CCEEEEEECSSCEEEEEECTTHHHHTC
T ss_pred ceEHHHcCCCCCceEEEEEEEEccccccc--cc--ccccCCccccccCCc---eEEEEEEEcCCcEEEEEEecCCcCcCC
Confidence 457888887644 6788888765321100 00 00000000 00000 012589999999999987531234567
Q ss_pred cCeEEEEEeEEc
Q 013632 141 TGIVVALHGKET 152 (439)
Q Consensus 141 tG~Vvav~G~~~ 152 (439)
+|.+|-+++-+.
T Consensus 89 ~Gd~v~i~na~v 100 (145)
T 1wjj_A 89 PGATVILRNSRI 100 (145)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCCEEEEeccEE
Confidence 899999988654
No 79
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=23.38 E-value=1.5e+02 Score=30.20 Aligned_cols=82 Identities=13% Similarity=-0.060 Sum_probs=44.5
Q ss_pred CeEEEEEecCCCCCCC-----CChhHHHHHHHHHhccCCCcccccccCCc-eEEEEeccCCCcCCCCCCCCcccccchhh
Q 013632 180 DKYVVLVSGLNVGSGT-----SNPLQFQLLVDHITGHLGDEKEQGIAAEI-VHVVIAGNSIEIPRGLLNGQNLASKDQSR 253 (439)
Q Consensus 180 ~~~i~~vSgl~lgs~~-----~~~~~~~~l~d~L~G~~g~~~~~~~~~~i-~~lIiaGn~i~~~~~~~~~~~~~~~~~~~ 253 (439)
+-+|+.+||+|-.-.. .....+..+++-+..+. ....+ .-++.+||++++.. . ..
T Consensus 8 ~l~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~-------~~~~~~~lvl~~GD~~~g~~-~-----------~~ 68 (516)
T 1hp1_A 8 KITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEV-------AAEGGSVLLLSGGDINTGVP-E-----------SD 68 (516)
T ss_dssp EEEEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHH-------HHHTCEEEEEECSCCSSSCH-H-----------HH
T ss_pred EEEEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhh-------hccCCCEEEEeCCccCCCcc-h-----------hh
Confidence 4679999999974211 11234455555554321 01123 68999999987631 0 00
Q ss_pred hhHhHHHHHHHHHhhcCCCcEEEcCCCCCCC
Q 013632 254 LFEPIKELDILLTQIAAGVPLDIMPGPNDPA 284 (439)
Q Consensus 254 ~~~~~~~ld~~L~~l~~~i~V~imPG~~Dp~ 284 (439)
+. .-+.+-++|..+.. . ...+||||..
T Consensus 69 ~~-~~~~~~~~ln~lg~--d-~~~~GNHEfd 95 (516)
T 1hp1_A 69 LQ-DAEPDFRGMNLVGY--D-AMAIGNHEFD 95 (516)
T ss_dssp TT-TTHHHHHHHHHHTC--C-EEECCGGGGS
T ss_pred hc-CCcHHHHHHhccCC--C-EEeecccccc
Confidence 00 01233345666643 2 5678999974
No 80
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=23.06 E-value=1.5e+02 Score=29.78 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=45.2
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc--cC------
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE--LL------ 135 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~--~~------ 135 (439)
+..|.+-..|+++.|-|.|... +.. ++=--+.|-|.+|.|.+..+. +.
T Consensus 7 ~~~l~~~~~~~~V~v~G~v~~~------------R~~------------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~ 62 (434)
T 1x54_A 7 CQEVKPELDGKKVRLAGWVYTN------------MRV------------GKKIFLWIRDSTGIVQAVVAKNVVGEETFEK 62 (434)
T ss_dssp GGGCCGGGTTCEEEEEEEEEEE------------EEE------------TTEEEEEEEETTEEEEEEECHHHHCHHHHHH
T ss_pred HHHhhHHhCCCEEEEEEEEEEE------------ecC------------CCeEEEEEEECCEEEEEEEECCcCCHHHHHH
Confidence 3344433358899999999865 211 011258889999999998742 11
Q ss_pred CcccccCeEEEEEeEEcC
Q 013632 136 PSAYVTGIVVALHGKETS 153 (439)
Q Consensus 136 ~~~lvtG~Vvav~G~~~~ 153 (439)
...+-.|.+|+|.|.+..
T Consensus 63 ~~~l~~~~~v~v~G~v~~ 80 (434)
T 1x54_A 63 AKKLGRESSVIVEGIVKA 80 (434)
T ss_dssp HHTCCTTCEEEEEEEEEE
T ss_pred HhcCCCCCEEEEEEEEEe
Confidence 145788999999999864
No 81
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=23.00 E-value=2e+02 Score=30.07 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=45.6
Q ss_pred ccceecccCCCeEEEEEEEEecCCCCCChhHhhhhccCCCCCCCCCCCCCCCceEEEecCCceEEEeecc---cC-----
Q 013632 64 ICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAE---LL----- 135 (439)
Q Consensus 64 v~~l~~~~~~~~~~viGtl~k~~~lkPsil~e~~~e~~~~~~~~~~~y~~~~d~l~LED~sgRV~L~~~~---~~----- 135 (439)
|..|..-..|+.+.|-|.|-.. +.. ++=--+.|-|.+|+|.+..+. ..
T Consensus 53 i~~l~~~~~g~~V~v~Gwv~~~------------R~~------------gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~ 108 (548)
T 3i7f_A 53 IEELVPAMAEKTVTIRARVQAV------------RGK------------GNMVFLFLRKGIYTCQALVMKSETISKEFVQ 108 (548)
T ss_dssp GGGCSGGGTTCEEEEEEEEEEE------------EEC------------SSEEEEEEEETTEEEEEEEECSSSSCHHHHH
T ss_pred hhhcchhcCCCEEEEEEEEEEE------------ecC------------CCeEEEEEEECCeeEEEEEECCCccCHHHHH
Confidence 4445444468899999999764 111 111257799999999998753 11
Q ss_pred -CcccccCeEEEEEeEEcC
Q 013632 136 -PSAYVTGIVVALHGKETS 153 (439)
Q Consensus 136 -~~~lvtG~Vvav~G~~~~ 153 (439)
...+-.|.+|+|.|.+..
T Consensus 109 ~~~~l~~es~V~V~G~v~~ 127 (548)
T 3i7f_A 109 FCQKISAESICDITGIVKA 127 (548)
T ss_dssp HHHTCCTTEEEEEEEEEEE
T ss_pred HHhCCCCCCEEEEEEEEEe
Confidence 235788999999999864
No 82
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=22.76 E-value=2.9e+02 Score=28.18 Aligned_cols=51 Identities=12% Similarity=-0.015 Sum_probs=29.0
Q ss_pred CCeEEEEEecCCCCCC--C------CChhHHHHHHHHHhccCCCcccccccCCc-eEEEEeccCCCcC
Q 013632 179 EDKYVVLVSGLNVGSG--T------SNPLQFQLLVDHITGHLGDEKEQGIAAEI-VHVVIAGNSIEIP 237 (439)
Q Consensus 179 ~~~~i~~vSgl~lgs~--~------~~~~~~~~l~d~L~G~~g~~~~~~~~~~i-~~lIiaGn~i~~~ 237 (439)
.+-.|+.+||+|-.-. . .....+.++..++...- +... .-++.+||.+++.
T Consensus 18 ~~l~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r--------~~~~~~l~l~~GD~~~gs 77 (527)
T 3qfk_A 18 SNIAFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDR--------RQYDQSFKIDNGDFLQGS 77 (527)
T ss_dssp CEEEEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHH--------TTSSEEEEEECSCCSSSS
T ss_pred CcEEEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHH--------hcCCCEEEEECCCcCCCc
Confidence 4678999999993211 0 11223555555554321 1223 4667799999763
No 83
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=21.18 E-value=3.1e+02 Score=23.63 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=32.2
Q ss_pred eEEEecCCce-EEEeecccC-------CcccccCeEEEEEeEEcC-CCc--EEEEEEee
Q 013632 117 HLVLEDESGR-VKLGGAELL-------PSAYVTGIVVALHGKETS-AGE--FLVLDVLD 164 (439)
Q Consensus 117 ~l~LED~sgR-V~L~~~~~~-------~~~lvtG~Vvav~G~~~~-~g~--F~V~di~~ 164 (439)
.+-+.|.||. |.+..-.-. ...+-.|.+|=|+|.+.. .|. ..++.+..
T Consensus 67 ~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr~~rqI~~~~i~~ 125 (159)
T 3kf6_A 67 VLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFRSEVELIAQSFEE 125 (159)
T ss_dssp EEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred EEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeCCEEEEEEEEEEE
Confidence 6889999996 887642101 123678999999999974 343 44455553
Done!