Your job contains 1 sequence.
>013634
MKLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLR
ADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRN
MNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV
SVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD
PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL
SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARI
VKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI
HMEVVEPQPNRPKLQLTLI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013634
(439 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-080213-3 - symbol:dis3 "DIS3 mitotic contro... 1020 5.8e-105 2
UNIPROTKB|E1BXX6 - symbol:DIS3 "Uncharacterized protein" ... 1037 9.5e-105 1
UNIPROTKB|E2RNY6 - symbol:DIS3 "Uncharacterized protein" ... 1037 9.5e-105 1
UNIPROTKB|G3V1J5 - symbol:DIS3 "Exosome complex exonuclea... 1037 9.5e-105 1
UNIPROTKB|Q9Y2L1 - symbol:DIS3 "Exosome complex exonuclea... 1037 9.5e-105 1
MGI|MGI:1919912 - symbol:Dis3 "DIS3 mitotic control homol... 1037 9.5e-105 1
UNIPROTKB|F1RHF7 - symbol:DIS3 "Uncharacterized protein" ... 1028 8.6e-104 1
DICTYBASE|DDB_G0293614 - symbol:DDB_G0293614 "putative ex... 1007 1.4e-101 1
WB|WBGene00001001 - symbol:dis-3 species:6239 "Caenorhabd... 994 3.4e-100 1
POMBASE|SPBC26H8.10 - symbol:dis3 "3'-5' exoribonuclease ... 978 1.7e-98 1
FB|FBgn0039183 - symbol:Dis3 "Dis3" species:7227 "Drosoph... 973 5.8e-98 1
CGD|CAL0003527 - symbol:orf19.5229 species:5476 "Candida ... 961 1.1e-96 1
UNIPROTKB|G4NDV8 - symbol:MGG_00193 "Mitotic control prot... 950 1.6e-95 1
SGD|S000005381 - symbol:DIS3 "Exosome core complex cataly... 922 1.5e-92 1
UNIPROTKB|F1N1R4 - symbol:DIS3 "Uncharacterized protein" ... 889 4.6e-89 1
ASPGD|ASPL0000011287 - symbol:AN3657 species:162425 "Emer... 849 8.0e-85 1
MGI|MGI:2442555 - symbol:Dis3l2 "DIS3 mitotic control hom... 699 6.3e-69 1
UNIPROTKB|E1B7R0 - symbol:DIS3L2 "Uncharacterized protein... 694 2.1e-68 1
RGD|1560168 - symbol:Dis3l2 "DIS3 mitotic control homolog... 694 2.1e-68 1
UNIPROTKB|F1SJJ9 - symbol:DIS3L "Uncharacterized protein"... 513 5.4e-68 2
UNIPROTKB|I3LEH1 - symbol:DIS3L "Uncharacterized protein"... 513 5.4e-68 2
ZFIN|ZDB-GENE-070705-171 - symbol:si:ch211-273k1.4 "si:ch... 675 1.3e-67 2
UNIPROTKB|E2QZ40 - symbol:DIS3L2 "Uncharacterized protein... 686 1.5e-67 1
UNIPROTKB|F6XKS7 - symbol:DIS3L2 "Uncharacterized protein... 686 1.5e-67 1
UNIPROTKB|Q8IYB7 - symbol:DIS3L2 "DIS3-like exonuclease 2... 685 1.9e-67 1
UNIPROTKB|Q5R5N8 - symbol:DIS3L "DIS3-like exonuclease 1"... 501 8.3e-67 2
UNIPROTKB|E1C372 - symbol:DIS3L2 "Uncharacterized protein... 672 4.5e-66 1
DICTYBASE|DDB_G0278757 - symbol:DDB_G0278757 "DIS3-like e... 461 4.9e-66 2
UNIPROTKB|Q0P4R5 - symbol:dis3l "DIS3-like exonuclease 1"... 477 7.2e-65 2
UNIPROTKB|Q8TF46 - symbol:DIS3L "DIS3-like exonuclease 1"... 482 9.5e-65 2
UNIPROTKB|Q6GN11 - symbol:dis3l "DIS3-like exonuclease 1"... 495 1.0e-64 2
UNIPROTKB|H7C440 - symbol:DIS3L2 "DIS3-like exonuclease 2... 637 2.3e-62 1
DICTYBASE|DDB_G0268186 - symbol:DDB_G0268186 species:4468... 440 1.5e-60 2
GENEDB_PFALCIPARUM|MAL13P1.289 - symbol:MAL13P1.289 "mito... 617 2.2e-59 1
UNIPROTKB|Q8IDB6 - symbol:MAL13P1.289 "Mitotic control pr... 617 2.2e-59 1
POMBASE|SPAC2C4.07c - symbol:SPAC2C4.07c "ribonuclease II... 565 4.8e-54 1
UNIPROTKB|A0JN80 - symbol:DIS3L "DIS3-like exonuclease 1"... 529 6.5e-50 1
UNIPROTKB|F1MEA6 - symbol:DIS3L "DIS3-like exonuclease 1"... 529 6.5e-50 1
ZFIN|ZDB-GENE-070209-95 - symbol:dis3l "DIS3 mitotic cont... 526 1.4e-49 1
MGI|MGI:2143272 - symbol:Dis3l "DIS3 mitotic control homo... 524 2.2e-49 1
RGD|1308959 - symbol:Dis3l "DIS3 mitotic control homolog ... 523 2.9e-49 1
UNIPROTKB|F1NKN5 - symbol:LOC100857630 "Uncharacterized p... 501 7.2e-47 1
UNIPROTKB|F1PK78 - symbol:DIS3L "Uncharacterized protein"... 498 1.3e-46 1
TIGR_CMR|CHY_0289 - symbol:CHY_0289 "ribonuclease R" spec... 455 1.4e-42 1
FB|FBgn0035111 - symbol:CG16940 species:7227 "Drosophila ... 455 5.8e-42 1
TIGR_CMR|SPO_3330 - symbol:SPO_3330 "ribonuclease R" spec... 449 8.3e-42 1
TIGR_CMR|GSU_1485 - symbol:GSU_1485 "ribonuclease R, puta... 442 5.2e-41 1
TAIR|locus:2203231 - symbol:AT1G77680 species:3702 "Arabi... 412 5.3e-41 2
TIGR_CMR|BA_5334 - symbol:BA_5334 "ribonuclease R" specie... 440 1.1e-40 1
ASPGD|ASPL0000054659 - symbol:AN1158 species:162425 "Emer... 427 9.9e-39 1
UNIPROTKB|I3LLL5 - symbol:I3LLL5 "Uncharacterized protein... 406 7.0e-38 1
CGD|CAL0003016 - symbol:SSD1 species:5476 "Candida albica... 418 7.9e-38 1
UNIPROTKB|Q5AK62 - symbol:SSD1 "Putative uncharacterized ... 418 7.9e-38 1
TIGR_CMR|CBU_1091 - symbol:CBU_1091 "ribonuclease R" spec... 406 4.2e-37 1
TIGR_CMR|CPS_4617 - symbol:CPS_4617 "ribonuclease R" spec... 388 5.1e-35 1
UNIPROTKB|P21499 - symbol:rnr species:83333 "Escherichia ... 380 3.5e-34 1
WB|WBGene00018612 - symbol:F48E8.6 species:6239 "Caenorha... 373 2.3e-33 1
TIGR_CMR|SO_3935 - symbol:SO_3935 "ribonuclease R" specie... 357 1.1e-31 1
UNIPROTKB|Q9KNY1 - symbol:rnr "Ribonuclease R" species:24... 338 1.2e-29 1
TIGR_CMR|VC_2599 - symbol:VC_2599 "ribonuclease R" specie... 338 1.2e-29 1
SGD|S000002701 - symbol:SSD1 "Translational repressor wit... 336 4.4e-29 1
UNIPROTKB|Q5HVE0 - symbol:CJE0734 "RNB-like protein" spec... 274 3.7e-21 1
TIGR_CMR|CJE_0734 - symbol:CJE_0734 "RNB-like protein" sp... 274 3.7e-21 1
POMBASE|SPCC16C4.09 - symbol:sts5 "RNB-like protein" spec... 248 8.6e-18 1
UNIPROTKB|P30850 - symbol:rnb "ribonuclease II" species:8... 241 2.3e-17 1
POMBASE|SPBC609.01 - symbol:SPBC609.01 "ribonuclease II (... 231 7.7e-16 1
UNIPROTKB|Q9KLE1 - symbol:rnb "Exoribonuclease 2" species... 212 4.5e-14 1
TIGR_CMR|VC_A0805 - symbol:VC_A0805 "exoribonuclease II" ... 212 4.5e-14 1
GENEDB_PFALCIPARUM|PFF0745c - symbol:PFF0745c "ribonuclea... 159 2.5e-13 2
DICTYBASE|DDB_G0285435 - symbol:DDB_G0285435 species:4468... 158 1.3e-12 3
RGD|1306056 - symbol:Pric285 "peroxisomal proliferator-ac... 137 5.2e-12 2
UNIPROTKB|E2RBM4 - symbol:PRIC285 "Uncharacterized protei... 137 1.7e-11 2
UNIPROTKB|E1C0Z0 - symbol:HELZ2 "Uncharacterized protein"... 148 1.8e-11 2
UNIPROTKB|Q9BYK8 - symbol:HELZ2 "Helicase with zinc finge... 137 2.2e-11 2
UNIPROTKB|I3LNA8 - symbol:I3LNA8 "Uncharacterized protein... 159 7.0e-11 1
TAIR|locus:2180172 - symbol:EMB2730 "EMBRYO DEFECTIVE 273... 146 1.5e-10 2
RGD|1304646 - symbol:Dis3 "DIS3 mitotic control homolog (... 175 4.2e-10 1
UNIPROTKB|F2Z2C0 - symbol:DIS3 "Exosome complex exonuclea... 173 6.8e-10 1
DICTYBASE|DDB_G0288469 - symbol:DDB_G0288469 species:4468... 114 1.1e-07 2
UNIPROTKB|F1RMM8 - symbol:LOC100519780 "Uncharacterized p... 118 5.4e-07 2
>ZFIN|ZDB-GENE-080213-3 [details] [associations]
symbol:dis3 "DIS3 mitotic control homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
ZFIN:ZDB-GENE-080213-3 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 SMART:SM00670 CTD:22894 EMBL:BX571717 IPI:IPI00803594
RefSeq:XP_001336850.2 UniGene:Dr.51536 ProteinModelPortal:E7FE01
Ensembl:ENSDART00000085454 GeneID:100003553 KEGG:dre:100003553
NextBio:20785882 Bgee:E7FE01 Uniprot:E7FE01
Length = 950
Score = 1020 (364.1 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 210/439 (47%), Positives = 299/439 (68%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ +L + IADV++F+ PG LD EA+ RGT+VYL +RIDM+P+ L+ ++CSLR+
Sbjct: 491 ELENGNLEVGVHIADVSHFIRPGNALDQEAANRGTTVYLCGKRIDMVPELLSSNLCSLRS 550
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
+VERLAFS IWE+ +AEII T +TKSVI S A+L+Y EAQ R+DD+ + D +T LR +
Sbjct: 551 NVERLAFSCIWEMNHKAEIIKTHFTKSVINSKASLTYAEAQMRIDDTTMNDDITKSLRGL 610
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK ++ +RI++GALTL+S EV+F ID+ETHDP+D+ ++ E N MVEEFML AN+S
Sbjct: 611 NKLAKILKAQRIDKGALTLSSPEVRFHIDSETHDPIDLQTKELMETNSMVEEFMLLANIS 670
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F C+LLR+HP+P + L++ A + L + S+KALADSL+ A ++
Sbjct: 671 VAQKIYDEFSECALLRKHPAPPPSNYDILIKAAKSRDLEIHTDSAKALADSLNNATIENF 730
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
YFN L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++VHRLL
Sbjct: 731 AYFNTLLRILATRCMMQAVYFCSG--MDSDFHHYGLASPIYTHFTSPIRRYADIIVHRLL 788
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPT-DTEAR 359
+ ++ D+ + +++ +N+NYRH+ AQ A R SV HT ++F+ + + E
Sbjct: 789 AVAINADSTYPDLMDKHKQSALCNNINYRHKMAQYAQRASVAFHTQLFFKNKGIINEEGF 848
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYL------TPR-GQKGSGDWY-VDEQQQKI---VKMDG 408
I+ +R N I+ +PKFG+EG V+ +PR G V+E +I VK+
Sbjct: 849 ILFVRKNAIIILIPKFGLEGTVFFENKDKPSPRLSFDTEGPTLKVEEHTFRIFDRVKVTI 908
Query: 409 NLSYSVLQTVNIHMEVVEP 427
+L S LQ I M + EP
Sbjct: 909 SLDASNLQHQRIRMALTEP 927
Score = 39 (18.8 bits), Expect = 5.8e-105, Sum P(2) = 5.8e-105
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 399 QQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKL 434
Q Q+I +M L+ V+ V++ + EP+ +PKL
Sbjct: 916 QHQRI-RMA--LTEPVIPGVSVPIPESEPEAKKPKL 948
>UNIPROTKB|E1BXX6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AADN02042596
IPI:IPI00592352 RefSeq:XP_417016.2 ProteinModelPortal:E1BXX6
Ensembl:ENSGALT00000027368 GeneID:418821 KEGG:gga:418821
NextBio:20821959 Uniprot:E1BXX6
Length = 963
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 208/440 (47%), Positives = 302/440 (68%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+++ +L + IADV++F+ PG LD+E+++RGT+VYL E+RIDM+P+ L+ ++CSLR+
Sbjct: 497 EIENGNLEVGVHIADVSHFIRPGNALDEESARRGTTVYLCEKRIDMVPELLSSNLCSLRS 556
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
+V+RLAFS IWE+ +AEI+ TR+TKS+I S A+L+Y EAQ R+D + + D +T LR +
Sbjct: 557 NVDRLAFSCIWEMNQKAEILKTRFTKSIINSKASLTYAEAQMRIDSAAMNDDITVSLRGL 616
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK ++++RI+ GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML ANVS
Sbjct: 617 NKLAKILKKKRIDNGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANVS 676
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +FP +LLR+HP+P + L++ A + L + S+KALA+SLD+A D
Sbjct: 677 VAQKIYDEFPEFALLRKHPAPPPSNYDILVKAAKSKNLEIKTDSAKALAESLDKAESPDF 736
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RIL TRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++VHRLL
Sbjct: 737 PYLNTLLRILTTRCMMQAVYFCSG--MDSDFHHYGLASPIYTHFTSPIRRYADIIVHRLL 794
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR-KRPTDTEAR 359
+ ++G D+ +L + NLNYRH+ AQ A R SV HT ++F+ K + +A
Sbjct: 795 AVAIGADSTYPELTDKHKLADLCKNLNYRHKMAQYAQRASVAFHTQLFFKTKGVVNEDAY 854
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYL------TPRGQKGSG--DWYVDEQQQKI---VKMDG 408
I+ +R N +V +PK+G+EG V+ TP+ S V++ + V +
Sbjct: 855 ILFVRRNAVVVLIPKYGLEGTVFFEEKDKPTPKLDYNSEVPSLTVEDTTLCVFDKVTVSV 914
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S +Q I ME+VEP+
Sbjct: 915 TLDASNIQHQKIRMELVEPK 934
>UNIPROTKB|E2RNY6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AAEX03013240
RefSeq:XP_542610.3 Ensembl:ENSCAFT00000008080 GeneID:485491
KEGG:cfa:485491 NextBio:20859485 Uniprot:E2RNY6
Length = 958
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 213/440 (48%), Positives = 298/440 (67%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSLR
Sbjct: 494 ELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRC 553
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
+V+RLAFS IWE+ +AEI+ R+TKSVI S A+L+Y EAQ R+D + + D +TT LR +
Sbjct: 554 NVDRLAFSCIWEMNHDAEILKVRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTSLRGL 613
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 614 NKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 673
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P E L++ A + L + ++K+LADSLDRA
Sbjct: 674 VAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKSLADSLDRADSPTF 733
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++VHRLL
Sbjct: 734 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLL 791
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L + NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 792 AVAIGADCTYPELTDKHKLADLCKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 851
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ-KI----------VKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE KI VK+
Sbjct: 852 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPKLIYDDEVPSLKIEDTVFHIFDKVKVKI 911
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 912 MLDSSNLQHQKIRMSLVEPQ 931
>UNIPROTKB|G3V1J5 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 InterPro:IPR022966 PROSITE:PS01175
EMBL:CH471093 EMBL:AL391384 UniGene:Hs.740506 HGNC:HGNC:20604
ChiTaRS:DIS3 ProteinModelPortal:G3V1J5 SMR:G3V1J5
Ensembl:ENST00000545453 ArrayExpress:G3V1J5 Bgee:G3V1J5
Uniprot:G3V1J5
Length = 796
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 213/440 (48%), Positives = 298/440 (67%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSL+
Sbjct: 332 ELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKC 391
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
DV+RLAFS IWE+ AEI+ T++TKSVI S A+L+Y EAQ R+D + + D +TT LR +
Sbjct: 392 DVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGL 451
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 452 NKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 511
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P E L++ A + L + ++K+LA+SLD+A
Sbjct: 512 VAKKIHEEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTF 571
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYADV+VHRLL
Sbjct: 572 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLL 629
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L I NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 630 AVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 689
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------VKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE KI VK+
Sbjct: 690 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKVKVKI 749
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 750 MLDSSNLQHQKIRMSLVEPQ 769
>UNIPROTKB|Q9Y2L1 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0000178 "exosome (RNase complex)" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IMP]
[GO:0004519 "endonuclease activity" evidence=IMP] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005829 GO:GO:0005654 GO:GO:0003723
GO:GO:0005085 GO:GO:0004519 GO:GO:0016075 GO:GO:0006364
EMBL:AL138695 GO:GO:0000176 GO:GO:0000175 GO:GO:0043928
eggNOG:COG0557 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 OMA:MPWSITE SMART:SM00670 EMBL:CH471093
GO:GO:0071034 EMBL:AL391384 EMBL:AF330044 EMBL:AB023225
EMBL:AL832266 EMBL:AK314715 EMBL:AL080158 EMBL:BC056143
IPI:IPI00183462 IPI:IPI00746351 PIR:JE0110 RefSeq:NP_001121698.1
RefSeq:NP_055768.3 UniGene:Hs.740506 ProteinModelPortal:Q9Y2L1
SMR:Q9Y2L1 IntAct:Q9Y2L1 STRING:Q9Y2L1 PhosphoSite:Q9Y2L1
DMDM:73620993 SWISS-2DPAGE:Q9Y2L1 PaxDb:Q9Y2L1 PRIDE:Q9Y2L1
Ensembl:ENST00000377767 Ensembl:ENST00000377780 GeneID:22894
KEGG:hsa:22894 UCSC:uc001vix.4 UCSC:uc001viy.4 CTD:22894
GeneCards:GC13M073329 H-InvDB:HIX0011365 HGNC:HGNC:20604
HPA:HPA039281 MIM:607533 neXtProt:NX_Q9Y2L1 PharmGKB:PA162383628
InParanoid:Q9Y2L1 OrthoDB:EOG45B1DT PhylomeDB:Q9Y2L1 ChiTaRS:DIS3
GenomeRNAi:22894 NextBio:43511 ArrayExpress:Q9Y2L1 Bgee:Q9Y2L1
CleanEx:HS_DIS3 Genevestigator:Q9Y2L1 GermOnline:ENSG00000083520
Uniprot:Q9Y2L1
Length = 958
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 213/440 (48%), Positives = 298/440 (67%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSL+
Sbjct: 494 ELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKC 553
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
DV+RLAFS IWE+ AEI+ T++TKSVI S A+L+Y EAQ R+D + + D +TT LR +
Sbjct: 554 DVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGL 613
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 614 NKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 673
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P E L++ A + L + ++K+LA+SLD+A
Sbjct: 674 VAKKIHEEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTF 733
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYADV+VHRLL
Sbjct: 734 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLL 791
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L I NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 792 AVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 851
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------VKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE KI VK+
Sbjct: 852 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKVKVKI 911
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 912 MLDSSNLQHQKIRMSLVEPQ 931
>MGI|MGI:1919912 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071034 "CUT catabolic process" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 MGI:MGI:1919912
InterPro:IPR006596 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0006364 GO:GO:0000176 GO:GO:0000175 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 OrthoDB:EOG45B1DT
EMBL:AK012840 EMBL:AK032091 EMBL:AK129259 IPI:IPI00407764
RefSeq:NP_082591.2 UniGene:Mm.163339 ProteinModelPortal:Q9CSH3
SMR:Q9CSH3 STRING:Q9CSH3 PhosphoSite:Q9CSH3 PaxDb:Q9CSH3
PRIDE:Q9CSH3 Ensembl:ENSMUST00000042471 GeneID:72662 KEGG:mmu:72662
UCSC:uc007uuw.1 InParanoid:Q9CSH3 NextBio:336687 Bgee:Q9CSH3
CleanEx:MM_DIS3 Genevestigator:Q9CSH3 Uniprot:Q9CSH3
Length = 958
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 212/440 (48%), Positives = 299/440 (67%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSLR+
Sbjct: 494 ELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRS 553
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
+V+RLAFS IWE+ AEI+ TR+TKSVI S A+L+Y EAQ R+D + + D +TT LR +
Sbjct: 554 NVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTSLRGL 613
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++ RIE+GALTL+S E++F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 614 NQLAKILKKGRIEKGALTLSSPEIRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 673
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P + L++ A + L + ++K+LADSLDRA D
Sbjct: 674 VAKKIHEEFSEHALLRKHPAPPPSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAESPDF 733
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++VHRLL
Sbjct: 734 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLL 791
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L+ I NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 792 AVAIGADCTYPELTDKHKLSDICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 851
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------VKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE +I VK+
Sbjct: 852 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPRLAYDDEIPSLRIEGTVFHVFDKVKVKI 911
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 912 TLDSSNLQHQKIRMALVEPQ 931
>UNIPROTKB|F1RHF7 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005654
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:MPWSITE GO:GO:0071034
EMBL:FP101966 Ensembl:ENSSSCT00000010370 Uniprot:F1RHF7
Length = 752
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 213/440 (48%), Positives = 296/440 (67%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSLR+
Sbjct: 288 ELENGDLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRS 347
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
+V+RLAFS IWE+ AEI+ TR+TKSVI S A+L+Y EAQ R+D + + D +T LR +
Sbjct: 348 NVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDSITASLRGL 407
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 408 NKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 467
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P E L++ A + L + ++KALADSLDR
Sbjct: 468 VAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKALADSLDRVDSPIF 527
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++VHRLL
Sbjct: 528 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLL 585
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L + NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 586 AVAIGADCTYPELTDKHKLADLCKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 645
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ-KI----------VKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE KI VK+
Sbjct: 646 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPRLIYDDEVPSLKIEDTVFHIFDKVKVRI 705
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 706 MLDSSNLQHQKIRMLLVEPQ 725
>DICTYBASE|DDB_G0293614 [details] [associations]
symbol:DDB_G0293614 "putative exoribonuclease"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0293614 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AAFI02000218 GO:GO:0000176 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
SMART:SM00670 RefSeq:XP_629050.1 ProteinModelPortal:Q54BH9
STRING:Q54BH9 EnsemblProtists:DDB0234145 GeneID:8629340
KEGG:ddi:DDB_G0293614 InParanoid:Q54BH9 ProtClustDB:CLSZ2429248
Uniprot:Q54BH9
Length = 1006
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 201/436 (46%), Positives = 298/436 (68%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV++FV GT +D+EA+ R TSVYLV+RRIDMLP L+ ++CSL ++V+R AFS IW+
Sbjct: 509 IADVSHFVQEGTAIDEEAANRSTSVYLVDRRIDMLPGELSGNLCSLMSNVDRFAFSCIWK 568
Query: 74 LTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 132
+ EII+ YTKS+I+SCA+L+Y +AQ R+DD D +T +LRN+NSLAK +R++R
Sbjct: 569 INQHTGEIIAVEYTKSIIRSCASLTYEQAQIRIDDKSQNDQITVNLRNLNSLAKILRKQR 628
Query: 133 IERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPL 192
+RGAL LAS +VKF+ + DP D+ +YQ+RE N M+EEFML AN+ VA++I + FP
Sbjct: 629 FDRGALYLASPQVKFKTEELGGDPSDVEIYQLRETNSMIEEFMLLANIWVAKKIYKHFPG 688
Query: 193 CSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILA 251
C++LRRHP+P K + L + G ++SK LADSLD AV +D YFN L RI+
Sbjct: 689 CAMLRRHPTPNKAAFDLLTKLIENKGYKFSTTTSKDLADSLDSAVDKNDSYFNTLCRIMT 748
Query: 252 TRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS 311
TRCM+ A YF SG L +F+HYGLA +YTHFTSPIRRY D++VHRLL++++GI + S
Sbjct: 749 TRCMSPAKYFSSGSLPYEDFNHYGLATDIYTHFTSPIRRYPDIIVHRLLASAIGIQSV-S 807
Query: 312 VFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVF 371
+ + ++++ +N N+RH+ AQ ASRGS +LHTLI+F+ R + +A I+++++N F+V
Sbjct: 808 LNLENKTISALTENNNFRHKMAQYASRGSTQLHTLIFFKGRKSVEDAYIIRVKANAFVVL 867
Query: 372 VPKFGIEGPVYL--------TPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 423
VP++G EG VY+ T G G+ + Y + + + +G ++ V V + +
Sbjct: 868 VPRYGFEGTVYVSDPNSSTATTNGGGGTSNIYNYNHEDQTLG-NGIHTFRVFDKVTVEIY 926
Query: 424 VVEPQPNRPKLQLTLI 439
V + + + KL++ I
Sbjct: 927 VDDSKAHDQKLKINCI 942
>WB|WBGene00001001 [details] [associations]
symbol:dis-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005737 GO:GO:0040010 GO:GO:0005730
GO:GO:0040018 GO:GO:0000003 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 GO:GO:0000178 GO:GO:0004540 GO:GO:0006364
eggNOG:COG0557 HOGENOM:HOG000191945 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 EMBL:Z70718 PIR:T18925 RefSeq:NP_501835.2
ProteinModelPortal:Q17632 SMR:Q17632 STRING:Q17632 PaxDb:Q17632
EnsemblMetazoa:C04G2.6 GeneID:177875 KEGG:cel:CELE_C04G2.6
UCSC:C04G2.6 CTD:177875 WormBase:C04G2.6 InParanoid:Q17632
NextBio:898756 Uniprot:Q17632
Length = 961
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 202/427 (47%), Positives = 286/427 (66%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV PGT +DDEA+ RGT+VYL +RRIDMLP L+ ++CSLR + ER AFS IW
Sbjct: 518 IADVTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWT 577
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
+T A+I S +Y KS+IKS AAL+Y +AQ +DD + + + LR + L+K + RR
Sbjct: 578 MTSSADIQSVKYHKSLIKSKAALTYEKAQEIIDDPKEQNDVALGLRGLMKLSKVLNARRT 637
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
GALTLAS+EV+F +D E+ P + Q + + MVEEFML AN+SVAE+IL ++P C
Sbjct: 638 GNGALTLASSEVRFDMDWESRTPKKVMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDC 697
Query: 194 SLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD-DPYFNKLIRILAT 252
+LLRRHP P KE +PL+ A G + V S K LADSL+R V +P N+L+R+L T
Sbjct: 698 ALLRRHPVPLKESYKPLVEAARHRGFEIIVESGKGLADSLNRCVDKKNPMLNRLLRMLTT 757
Query: 253 RCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSV 312
RCMTQAVYF +G + P++ H+GLA +YTHFTSPIRRYADV+VHRLL+A++G + S
Sbjct: 758 RCMTQAVYFSAGTVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSG 817
Query: 313 FQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFV 372
++ + T I N+NYRH+ AQ A R SV+L+ + YF+ + E ++ +R+NG VFV
Sbjct: 818 LLNQARCTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKVETCEGFVMGVRNNGIQVFV 877
Query: 373 PKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432
PK+G+E + L G+ +D ++ VK++G++ L+ V + + V E RP
Sbjct: 878 PKYGLESIIVLQTSAASGTT---IDVEEMS-VKVNGDVVIKELEPVTVRISVNEKNQQRP 933
Query: 433 KLQLTLI 439
+++L LI
Sbjct: 934 RVELQLI 940
>POMBASE|SPBC26H8.10 [details] [associations]
symbol:dis3 "3'-5' exoribonuclease subunit Dis3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000465 "exonucleolytic
trimming to generate mature 5'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008536 "Ran GTPase binding" evidence=IPI] [GO:0032853
"positive regulation of Ran GTPase activity" evidence=IMP]
[GO:0034661 "ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001900 InterPro:IPR003029
Pfam:PF00773 PROSITE:PS50126 SMART:SM00955 PomBase:SPBC26H8.10
InterPro:IPR006596 GO:GO:0051301 GO:GO:0007067 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0040008 GO:GO:0004521
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 EMBL:M74094 PIR:A41944
RefSeq:NP_596653.1 ProteinModelPortal:P37202 SMR:P37202
STRING:P37202 PRIDE:P37202 EnsemblFungi:SPBC26H8.10.1
GeneID:2540398 KEGG:spo:SPBC26H8.10 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH BRENDA:3.1.13.1 NextBio:20801525 GO:GO:0000465
GO:GO:0032853 SMART:SM00670 Uniprot:P37202
Length = 970
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 202/437 (46%), Positives = 283/437 (64%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV P T +D EA+ RGT+VYLV++RIDMLP L D+CSLR VER AFS IWE
Sbjct: 535 IADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWE 594
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
+ A II +TKSVI S A SY +AQAR+DD ++ DPLT +R + L+K ++Q+R+
Sbjct: 595 MDENANIIKVHFTKSVIASKEAFSYADAQARIDDQKMQDPLTQGMRVLLKLSKILKQKRM 654
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
+ GAL LAS EV+ Q D ET DP+D+ + Q+ E N +VEEFML AN+SVA++I FP
Sbjct: 655 DEGALNLASPEVRIQTDNETSDPMDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQT 714
Query: 194 SLLRRHPSP--TK-EMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD-DPYFNKLIRI 249
++LRRH +P T + L+ +LR G++L +SK+LA SLD V +PYFN L+RI
Sbjct: 715 AVLRRHAAPPLTNFDSLQDILRVCK--GMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRI 772
Query: 250 LATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKL 309
L TRCM A YFCSG PP+F HYGLA+P+YTHFTSPIRRYADV+ HR L+A++ +
Sbjct: 773 LTTRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETI 832
Query: 310 PSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFI 369
D+ +L I + +NYRHR AQMA R S+E + + + +A ++K+ NGF+
Sbjct: 833 NPSLSDKSRLIEICNGINYRHRMAQMAGRASIEYYVGQALKGGVAEEDAYVIKVFKNGFV 892
Query: 370 VFVPKFGIEGPVYLTPRGQ--KGSGDWYVDEQQQKIVKMDG----NLSYSVLQTVNIHME 423
VF+ +FG+EG VY + + ++ DE + I D + + Q V + +
Sbjct: 893 VFIARFGLEGIVYTKSLSSVLEPNVEYVEDEYKLNIEIRDQPKPQTVQIQMFQQVRVRVT 952
Query: 424 VVEPQPN-RPKLQLTLI 439
V + + + K+Q+TL+
Sbjct: 953 TVRDEHSGKQKVQITLV 969
>FB|FBgn0039183 [details] [associations]
symbol:Dis3 "Dis3" species:7227 "Drosophila melanogaster"
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0071027 "nuclear RNA
surveillance" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0022008 GO:GO:0003723 GO:GO:0004540 GO:GO:0010468
GO:GO:0005652 GO:GO:0000176 InterPro:IPR022966 PROSITE:PS01175
SMART:SM00670 GO:GO:0071027 FlyBase:FBgn0039183 EMBL:AJ276897
ProteinModelPortal:Q9BI20 STRING:Q9BI20 PRIDE:Q9BI20
InParanoid:Q9BI20 ArrayExpress:Q9BI20 Bgee:Q9BI20 Uniprot:Q9BI20
Length = 983
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 195/405 (48%), Positives = 274/405 (67%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRG-TSVYLVERRIDMLPKPLTEDICSLR 60
+L +L + IADV++F+ PG S G T+VYLV +RIDM+P+ L+ ++CSL
Sbjct: 501 ELPNGNLEVGVHIADVSHFIRPGKRTGHGGSGPGETTVYLVGKRIDMVPELLSSNLCSLV 560
Query: 61 ADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRN 120
VER AFS +WE+ EA ++S R+ KSVIKS A++Y EAQ +DD+ + + LRN
Sbjct: 561 GGVERFAFSCVWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIIDDATQQNEIAKSLRN 620
Query: 121 MNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV 180
+N LAK +++RR++ GAL LAS E++FQ+D+ETH+PL++ + Q+RE N MVEEFML AN+
Sbjct: 621 LNRLAKILKKRRMDNGALVLASPEIRFQVDSETHEPLEVEVKQMRETNSMVEEFMLLANI 680
Query: 181 SVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV-GD 239
+VAE I +F C++LRRHP P +PL+++A G +D++S L+ SLD+ V D
Sbjct: 681 TVAEHIATEFSECAVLRRHPRPPPTNFDPLVKSARYQGFQVDINSGLELSHSLDKCVKAD 740
Query: 240 DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRL 299
+PYFN +IRIL TRCM QAVYF SG L EF HYGLAAP+YTHFTSPIRRY+D++VHRL
Sbjct: 741 NPYFNTMIRILTTRCMMQAVYFISGSLQKEEFFHYGLAAPIYTHFTSPIRRYSDIMVHRL 800
Query: 300 LSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR 359
L+AS+G + DR + NLNYRH+ AQ A R SV L+T ++FR + D E
Sbjct: 801 LAASIGADSTYAQLLDRKSNEELCHNLNYRHKMAQYAGRASVALNTHLFFRGKEEDEEGY 860
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIV 404
++ +R N V +PK+G+EG +YL + K D V+ + +IV
Sbjct: 861 VLFVRKNALQVLIPKYGLEGTLYL--KSDKDGKDG-VERVKSEIV 902
>CGD|CAL0003527 [details] [associations]
symbol:orf19.5229 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001900
InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
CGD:CAL0003527 InterPro:IPR006596 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 SMART:SM00670 EMBL:AACQ01000070
EMBL:AACQ01000071 RefSeq:XP_716298.1 RefSeq:XP_716360.1
ProteinModelPortal:Q5A3P1 SMR:Q5A3P1 STRING:Q5A3P1 GeneID:3641956
GeneID:3642063 KEGG:cal:CaO19.12694 KEGG:cal:CaO19.5229
Uniprot:Q5A3P1
Length = 1004
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 198/430 (46%), Positives = 276/430 (64%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV P TPLD E + RGTSVYLV++RIDMLP+ L ++CSL+ V+R AFSVIWE
Sbjct: 574 IADVTHFVKPNTPLDQEGASRGTSVYLVDKRIDMLPQLLGTNLCSLKPFVDRFAFSVIWE 633
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
+ +A I++ Y KS+IKS A SY +AQ R+DD D LT +R + L+KK++Q+R+
Sbjct: 634 VDEDANIVNVNYMKSIIKSRQAFSYEQAQLRIDDPSQQDDLTKSMRILLKLSKKLKQKRL 693
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
+ GAL LAS EVK +D+ET DP ++ + ++ E N +VEEFML AN+SVA +I +P
Sbjct: 694 DAGALNLASPEVKVHMDSETSDPQEVEIKKLLETNSLVEEFMLFANISVARKIYDAYPQT 753
Query: 194 SLLRRHPSPTKEMLEPL--LRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRIL 250
++LRRH +P E L + G+++ + SSKALADSLDR + +D YFN L+RI+
Sbjct: 754 AMLRRHAAPPATNFETLNDMLNVRKNGMSISLESSKALADSLDRCIDPNDKYFNTLVRIM 813
Query: 251 ATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLP 310
+TRCM A YF SG PEF HYGLA +YTHFTSPIRRY DVV HR L+ ++G L
Sbjct: 814 STRCMMAAEYFPSGSYGYPEFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYENLD 873
Query: 311 SVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIV 370
+D+ ++ I N+N RHRNAQ A R S+E + R ++ E I+KI +NG +V
Sbjct: 874 LSHRDKSKMEMIVRNINKRHRNAQFAGRSSIEYYVGQVMRNNESEHEGYIIKIFNNGIVV 933
Query: 371 FVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGN-LSYSVLQTVNIHMEVVEPQ- 428
VPKFG+EG + L G S ++ D+ + GN + +V V + ++ V+ +
Sbjct: 934 LVPKFGVEGLIKLENMGDVNSANYNEDKYELTFTDFKGNERTIAVFDKVKVDVKSVKDEI 993
Query: 429 PNRPKLQLTL 438
+ K QL L
Sbjct: 994 SGKRKAQLML 1003
>UNIPROTKB|G4NDV8 [details] [associations]
symbol:MGG_00193 "Mitotic control protein dis3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773
PROSITE:PS50126 SMART:SM00955 InterPro:IPR006596 GO:GO:0005730
EMBL:CM001235 GO:GO:0004521 GO:GO:0000049 GO:GO:0071039
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 KO:K12585
SMART:SM00670 GO:GO:0071028 RefSeq:XP_003718924.1
ProteinModelPortal:G4NDV8 SMR:G4NDV8 EnsemblFungi:MGG_00193T0
GeneID:2674544 KEGG:mgr:MGG_00193 Uniprot:G4NDV8
Length = 990
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 194/373 (52%), Positives = 263/373 (70%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV++FV P +D EAS RGT+VYLV++RIDMLP L D+CSL+ VER AFSV+WE
Sbjct: 562 IADVSHFVKPSNAMDTEASIRGTTVYLVDKRIDMLPMLLGTDLCSLKPYVERFAFSVLWE 621
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
LTP+A+I++ R+TKSVIKS A SY AQ R+DD+ D LTT +R + +L+KK++Q+R+
Sbjct: 622 LTPDADIVNARFTKSVIKSREAFSYEAAQIRVDDASQQDELTTGIRTLLALSKKLKQKRM 681
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
+ GAL+L+S EVK Q+++ET DP+DI E +VEEFML AN+SVA +I P
Sbjct: 682 DAGALSLSSPEVKVQMESETSDPIDIKTKVHLETMSLVEEFMLLANISVARKIYEASPQT 741
Query: 194 SLLRRHPSPTKEMLEPLL-RTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILA 251
++LRRH +P K + L + G L V SS+ALADSLD V ++P+FN L+RI+A
Sbjct: 742 AILRRHGAPPKTNFDELANQLKVKKGFELRVDSSRALADSLDTCVDPNNPFFNTLVRIMA 801
Query: 252 TRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKL-P 310
TRCM A YFCSG PEF HYGLA+ +YTHFTSPIRRYAD+V HR L+A++G + P
Sbjct: 802 TRCMMSAEYFCSGTQAYPEFRHYGLASEIYTHFTSPIRRYADLVAHRQLAAAIGYEAVHP 861
Query: 311 SVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIV 370
SV + R +L ++ N+N RHRNAQ+A R SV + + + + + I+KI SNGF+V
Sbjct: 862 SV-RSRGRLEAVCRNINVRHRNAQLAGRASVAYYVGQSLKGKVAEEDGFIMKIFSNGFVV 920
Query: 371 FVPKFGIEGPVYL 383
+VP+FG+EG + L
Sbjct: 921 YVPRFGVEGLIRL 933
>SGD|S000005381 [details] [associations]
symbol:DIS3 "Exosome core complex catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IC] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IDA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IMP]
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004521
"endoribonuclease activity" evidence=IMP;IDA] [GO:0000178 "exosome
(RNase complex)" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IGI;IMP;IDA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0000049 "tRNA
binding" evidence=IDA;IMP] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=IC] [GO:0043628 "ncRNA
3'-end processing" evidence=IMP] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IC]
InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 SGD:S000005381 InterPro:IPR006596 GO:GO:0005739
GO:GO:0005730 EMBL:BK006948 GO:GO:0004521 GO:GO:0000049
GO:GO:0071039 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000175 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 OMA:MPWSITE OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028
PDB:2WP8 PDBsum:2WP8 EMBL:D76430 EMBL:Z74763 PIR:S66704
RefSeq:NP_014621.1 PDB:2VNU PDBsum:2VNU ProteinModelPortal:Q08162
SMR:Q08162 DIP:DIP-2355N IntAct:Q08162 MINT:MINT-614156
STRING:Q08162 PaxDb:Q08162 PeptideAtlas:Q08162 EnsemblFungi:YOL021C
GeneID:854138 KEGG:sce:YOL021C CYGD:YOL021c
EvolutionaryTrace:Q08162 NextBio:975871 Genevestigator:Q08162
GermOnline:YOL021C Uniprot:Q08162
Length = 1001
Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
Identities = 198/434 (45%), Positives = 275/434 (63%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV PGT LD E + RGTSVYLV++RIDMLP L D+CSL+ V+R AFSVIWE
Sbjct: 570 IADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWE 629
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
L A I++ + KSVI+S A SY +AQ R+DD D LT +R + L+ K++Q+R+
Sbjct: 630 LDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRL 689
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
E GAL LAS EVK +D+ET DP ++ + ++ N +VEEFML AN+SVA +I FP
Sbjct: 690 EAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQT 749
Query: 194 SLLRRH---PSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRI 249
++LRRH PS E+L +L T + ++L+ SSKALADSLDR V +DPYFN L+RI
Sbjct: 750 AMLRRHAAPPSTNFEILNEMLNTRKNMSISLE--SSKALADSLDRCVDPEDPYFNTLVRI 807
Query: 250 LATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKL 309
++TRCM A YF SG + P+F HYGLA +YTHFTSPIRRY DVV HR L+ ++G L
Sbjct: 808 MSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPL 867
Query: 310 PSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFI 369
+D+ ++ I N+N +HRNAQ A R S+E + R + ++K+ +NG +
Sbjct: 868 SLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIV 927
Query: 370 VFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYS----VLQTVNIHME-V 424
V VPKFG+EG + L + + + DE + K+ + N V V + + V
Sbjct: 928 VLVPKFGVEGLIRLDNLTEDPNSAAF-DEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSV 986
Query: 425 VEPQPNRPKLQLTL 438
++P ++ K +L L
Sbjct: 987 MDPITSKRKAELLL 1000
>UNIPROTKB|F1N1R4 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 EMBL:DAAA02033486 EMBL:DAAA02033485
IPI:IPI01017508 Ensembl:ENSBTAT00000026500 Uniprot:F1N1R4
Length = 951
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 194/440 (44%), Positives = 279/440 (63%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ +L + IADV++F+ PG LD E+++RGT+VYL E+RID + + + S
Sbjct: 494 ELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDXFTELVVGNKASCET 553
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
D E S + +L ++I+ Y K+++ A+L+Y EAQ R+D + + D +TT LR +
Sbjct: 554 DKE----SCVNDLNFPSKIL---YEKNLVNIQASLTYAEAQMRIDSAAMNDNITTSLRGL 606
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++ RIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 607 NKLAKILKKGRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 666
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P E L++ A + L + ++KALADSLD+A
Sbjct: 667 VAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEIKTDTAKALADSLDQADSPIF 726
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++VHRLL
Sbjct: 727 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLL 784
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L + NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 785 AVAIGADCTYPELTDKHKLADLCKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 844
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------VKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE KI VK+
Sbjct: 845 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPRLIYDDEIPSLKIEDTVFHVFDKVKVKI 904
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 905 MLDSSNLQHQKIRMSLVEPQ 924
>ASPGD|ASPL0000011287 [details] [associations]
symbol:AN3657 species:162425 "Emericella nidulans"
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005730 EMBL:BN001302 EMBL:AACD01000061 GO:GO:0004521
GO:GO:0000049 GO:GO:0071039 GO:GO:0071035 GO:GO:0071038
GO:GO:0000467 GO:GO:0070651 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028 RefSeq:XP_661261.1
ProteinModelPortal:Q5B723 SMR:Q5B723 STRING:Q5B723
EnsemblFungi:CADANIAT00005078 GeneID:2873078 KEGG:ani:AN3657.2
Uniprot:Q5B723
Length = 1015
Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
Identities = 189/402 (47%), Positives = 258/402 (64%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + + IADV++FV P +D EAS RGT+VYLV++RIDMLP L D+CSL+
Sbjct: 530 KLPNGNFEVGVHIADVSHFVKPNNAMDLEASVRGTTVYLVDKRIDMLPHLLGTDLCSLKP 589
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
VER AFSV+WE+TP+AE++S +TKSVI+S A SY +AQ R+DD D LT +R +
Sbjct: 590 YVERYAFSVLWEMTPDAEVVSADFTKSVIRSREAFSYEQAQLRIDDPSKTDELTESMRTL 649
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDT-ETHDPL-DIGMYQIREANQMVEEFMLAAN 179
L+K +RQ+R++ GAL LAS EV+ + D E DPL D+ + N +VEEFML AN
Sbjct: 650 LHLSKILRQKRMDAGALNLASPEVRIEADNDEVGDPLADVKTKAMLATNSLVEEFMLHAN 709
Query: 180 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAV-GLNLDVSSSKALADSLDRAV- 237
++VA +I FP ++LRRH +P + E L+ + LDVSSS+ALADSLDR
Sbjct: 710 ITVAAKIYSTFPQTAMLRRHATPPPQNFEELINQLTKKRDMRLDVSSSRALADSLDRCTD 769
Query: 238 GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
++P+FN L+RILATRCMT A YFC+G EF HYGLA+P+YTHFTSPIRRYAD++VH
Sbjct: 770 AENPFFNTLVRILATRCMTSAEYFCAGAHAESEFRHYGLASPIYTHFTSPIRRYADLLVH 829
Query: 298 RLLSASLGIYKLP---SVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHT--LIYF 349
R L+A++ Y+ + + R +L I N+NYRHRNAQ A R S+E + +
Sbjct: 830 RQLAAAIN-YEGEDGRATIEGSITRNRLEDICRNINYRHRNAQHAGRASIEYYVGQALKA 888
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPR-GQKG 390
R T + I +G+++ V + G+ V PR G +G
Sbjct: 889 RSEKLATNGVDIGIEEDGYVMRVFENGV---VVFVPRFGIEG 927
Score = 347 (127.2 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 75/162 (46%), Positives = 101/162 (62%)
Query: 239 DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR 298
++P+FN L+RILATRCMT A YFC+G EF HYGLA+P+YTHFTSPIRRYAD++VHR
Sbjct: 771 ENPFFNTLVRILATRCMTSAEYFCAGAHAESEFRHYGLASPIYTHFTSPIRRYADLLVHR 830
Query: 299 LLSASL------GIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR 352
L+A++ G + R +L I N+NYRHRNAQ A R S+E + + R
Sbjct: 831 QLAAAINYEGEDGRATIEGSIT-RNRLEDICRNINYRHRNAQHAGRASIEYYVGQALKAR 889
Query: 353 PT-----------DTEARIVKIRSNGFIVFVPKFGIEGPVYL 383
+ + ++++ NG +VFVP+FGIEG V L
Sbjct: 890 SEKLATNGVDIGIEEDGYVMRVFENGVVVFVPRFGIEGVVRL 931
>MGI|MGI:2442555 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S.
cerevisiae)-like 2" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0007067 "mitosis" evidence=ISO] [GO:0008285 "negative
regulation of cell proliferation" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0051306 "mitotic sister chromatid separation"
evidence=ISO] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
MGI:MGI:2442555 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 GO:GO:0051306
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 HOVERGEN:HBG107810
EMBL:AK031180 EMBL:BC036177 IPI:IPI00229771 IPI:IPI00881442
RefSeq:NP_001165628.1 RefSeq:NP_705758.1 UniGene:Mm.389152
ProteinModelPortal:Q8CI75 SMR:Q8CI75 STRING:Q8CI75
PhosphoSite:Q8CI75 PaxDb:Q8CI75 PRIDE:Q8CI75
Ensembl:ENSMUST00000065694 Ensembl:ENSMUST00000168237 GeneID:208718
KEGG:mmu:208718 UCSC:uc007bvu.2 UCSC:uc007bvv.2
HOGENOM:HOG000017705 InParanoid:Q8CI75 OMA:VQKRVYC
OrthoDB:EOG415GCR NextBio:372395 Bgee:Q8CI75 Genevestigator:Q8CI75
Uniprot:Q8CI75
Length = 870
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 157/389 (40%), Positives = 242/389 (62%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW+
Sbjct: 408 IADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWK 467
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD--SRL----MDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ +++ ++ + P++ + +
Sbjct: 468 LTPEGKILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPEEELPPISPEHSVEEVHQAV 527
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++S+AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML A
Sbjct: 528 LNLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLA 587
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA +I R FP +LLRRHP P +ML L+ +GL +DVSS+ AL SL + G
Sbjct: 588 NMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFG 647
Query: 239 DDPYF---NKLIRILATRCMTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +++ + +R M A+YFCSG L E F HY L PLYTHFTSPIRR+ADV
Sbjct: 648 DDKYSLARKEVLTNMYSRPMQMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADV 707
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR-P 353
+VHRLL+A+LG + P V D L AD+ N R ++ S+ L + ++ P
Sbjct: 708 IVHRLLAAALGYSEQPDVEPDT--LQKQADHCNDRRMASKRVQELSIGLFFAVLVKESGP 765
Query: 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
++EA ++ + + F V V +FG++ +Y
Sbjct: 766 LESEAMVMGVLNQAFDVLVLRFGVQKRIY 794
>UNIPROTKB|E1B7R0 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 OMA:VQKRVYC
EMBL:DAAA02006206 EMBL:DAAA02006207 EMBL:DAAA02006208
IPI:IPI00693579 RefSeq:NP_001179435.1 UniGene:Bt.54653
ProteinModelPortal:E1B7R0 Ensembl:ENSBTAT00000038112 GeneID:519222
KEGG:bta:519222 NextBio:20872834 Uniprot:E1B7R0
Length = 882
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 165/393 (41%), Positives = 239/393 (60%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW
Sbjct: 410 IADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWT 469
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQA-------RMDDSRL--MDPL-TTD-----L 118
LTP+ +I++ + +++I+SC LSY AQ+ R+ + L + P T D +
Sbjct: 470 LTPKGKILAEWFGRTIIRSCTKLSYEHAQSMIESPTRRIPERELPAISPEHTCDEVHRAV 529
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML A
Sbjct: 530 LNLHGVAKELRRQRFADGALRLDQLKLAFTLDHETGLPQGCHVYEYRDSNKLVEEFMLLA 589
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA +I R FP +LLRRHP P +ML L+ +GL +D SS+ AL SL G
Sbjct: 590 NMAVAHKIHRAFPEQALLRRHPPPQTKMLNDLVEFCDQMGLPMDFSSAGALNKSLTEMFG 649
Query: 239 DDPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +L C M AVYFCSG L P +F HY L PLYTHFTSPIRR+ADV
Sbjct: 650 DDKYSLARKEVLTNMCSRPMQMAVYFCSGALRDPAQFRHYALNVPLYTHFTSPIRRFADV 709
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----- 349
+VHRLL+++LG +LP V D L AD+ N R +MAS+ EL T ++F
Sbjct: 710 LVHRLLASALGYRELPDVEPD--SLQKQADHCNDR----RMASKRVQELSTGLFFAILVR 763
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
P ++EA ++ + + F V V ++G++ VY
Sbjct: 764 ESGPLESEAMVMGVLNQAFDVLVLRYGVQKRVY 796
>RGD|1560168 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like
2" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007067 "mitosis"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0051306 "mitotic sister chromatid
separation" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 RGD:1560168 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
OrthoDB:EOG415GCR IPI:IPI00950040 Ensembl:ENSRNOT00000066216
UCSC:RGD:1560168 ArrayExpress:D3ZWJ4 Uniprot:D3ZWJ4
Length = 884
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 157/389 (40%), Positives = 241/389 (61%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW+
Sbjct: 422 IADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWK 481
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD--SRL----MDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ +++ ++ + P++ + +
Sbjct: 482 LTPEGKILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPKEELPPISPEHSIEEVHQAV 541
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++S+AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML A
Sbjct: 542 LNLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLA 601
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA +I R FP +LLRRHP P +ML L+ +GL +DVSS+ AL SL G
Sbjct: 602 NMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTNTFG 661
Query: 239 DDPYF---NKLIRILATRCMTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +++ + +R M A+YFCSG L +F HY L PLYTHFTSPIRR+ADV
Sbjct: 662 DDKYSLARKEVLTNMYSRPMQMALYFCSGMLQDQAQFRHYALNVPLYTHFTSPIRRFADV 721
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR-P 353
+VHRLL+A+LG + P V D L AD+ N R ++ S+ L I ++ P
Sbjct: 722 IVHRLLAAALGYSEQPDVEPDA--LQKQADHCNDRRMASKRVQELSIGLFFSILVKESGP 779
Query: 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
++EA ++ + + F V V +FG++ +Y
Sbjct: 780 LESEAMVMGVLNQAFDVLVLRFGVQKRIY 808
>UNIPROTKB|F1SJJ9 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:CU062652 Ensembl:ENSSSCT00000005453 Uniprot:F1SJJ9
Length = 1057
Score = 513 (185.6 bits), Expect = 5.4e-68, Sum P(2) = 5.4e-68
Identities = 119/290 (41%), Positives = 169/290 (58%)
Query: 106 DDSRL--MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 163
D SR ++ L +R + +A+ +R +R GAL L EV+ Q+D E + D+ Q
Sbjct: 618 DKSRQAKLEELVWAIRKLTDIARHIRAKRDLCGALELEGVEVRIQLD-EKKNIHDLIPKQ 676
Query: 164 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 223
E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 677 PLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDT 736
Query: 224 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 282
S+K LADSLD A +DP NKL+R +AT+ M+ A+YF +G EFHHYGLA YT
Sbjct: 737 RSNKTLADSLDNANDPNDPIVNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYT 796
Query: 283 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRG 339
HFTSPIRRY+D++VHRLL ++ K + ++ L + ++N R+R AQ +
Sbjct: 797 HFTSPIRRYSDIIVHRLLMEAISKDKKMEIKENLFSNKDLEELCKHINNRNRAAQHCQKQ 856
Query: 340 SVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
S EL +YF+ + DTE R I IR+NG +VF+P+FGI+G YL
Sbjct: 857 STELFQCMYFKDKDPDTEERCISDGVIYSIRTNGVLVFIPRFGIKGAAYL 906
Score = 215 (80.7 bits), Expect = 5.4e-68, Sum P(2) = 5.4e-68
Identities = 52/133 (39%), Positives = 75/133 (56%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 497 LDNGNLELGVHIADVTHFVAPHSYIDIEARSRATTYYLADRRYDMLPSILSADVCSLLGG 556
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A SV+WEL + EI + Y +++I+S L Y AQ +D + + D+
Sbjct: 557 VDRYAVSVMWELDKTSHEIKNVWYGRTIIRSAYKLFYEAAQELLDGNF---SIVDDIPEF 613
Query: 122 NSLAKKMRQRRIE 134
L K RQ ++E
Sbjct: 614 RDLDDKSRQAKLE 626
Score = 39 (18.8 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 77 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 118
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASTKDSGLVSDI 277
Score = 37 (18.1 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 164 IREANQMVEEFMLAANVSV 182
++E + VEE LA V V
Sbjct: 1000 VKEVTRSVEEAQLAQEVKV 1018
>UNIPROTKB|I3LEH1 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CU062652
Ensembl:ENSSSCT00000024119 Uniprot:I3LEH1
Length = 1059
Score = 513 (185.6 bits), Expect = 5.4e-68, Sum P(2) = 5.4e-68
Identities = 119/290 (41%), Positives = 169/290 (58%)
Query: 106 DDSRL--MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 163
D SR ++ L +R + +A+ +R +R GAL L EV+ Q+D E + D+ Q
Sbjct: 620 DKSRQAKLEELVWAIRKLTDIARHIRAKRDLCGALELEGVEVRIQLD-EKKNIHDLIPKQ 678
Query: 164 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 223
E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 679 PLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDT 738
Query: 224 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 282
S+K LADSLD A +DP NKL+R +AT+ M+ A+YF +G EFHHYGLA YT
Sbjct: 739 RSNKTLADSLDNANDPNDPIVNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYT 798
Query: 283 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRG 339
HFTSPIRRY+D++VHRLL ++ K + ++ L + ++N R+R AQ +
Sbjct: 799 HFTSPIRRYSDIIVHRLLMEAISKDKKMEIKENLFSNKDLEELCKHINNRNRAAQHCQKQ 858
Query: 340 SVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
S EL +YF+ + DTE R I IR+NG +VF+P+FGI+G YL
Sbjct: 859 STELFQCMYFKDKDPDTEERCISDGVIYSIRTNGVLVFIPRFGIKGAAYL 908
Score = 215 (80.7 bits), Expect = 5.4e-68, Sum P(2) = 5.4e-68
Identities = 52/133 (39%), Positives = 75/133 (56%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 499 LDNGNLELGVHIADVTHFVAPHSYIDIEARSRATTYYLADRRYDMLPSILSADVCSLLGG 558
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A SV+WEL + EI + Y +++I+S L Y AQ +D + + D+
Sbjct: 559 VDRYAVSVMWELDKTSHEIKNVWYGRTIIRSAYKLFYEAAQELLDGNF---SIVDDIPEF 615
Query: 122 NSLAKKMRQRRIE 134
L K RQ ++E
Sbjct: 616 RDLDDKSRQAKLE 628
Score = 39 (18.8 bits), Expect = 1.8e-49, Sum P(2) = 1.8e-49
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 77 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 118
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASTKDSGLVSDI 277
Score = 37 (18.1 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 164 IREANQMVEEFMLAANVSV 182
++E + VEE LA V V
Sbjct: 1002 VKEVTRSVEEAQLAQEVKV 1020
>ZFIN|ZDB-GENE-070705-171 [details] [associations]
symbol:si:ch211-273k1.4 "si:ch211-273k1.4"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070705-171 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BX001029 IPI:IPI00499069 Ensembl:ENSDART00000083272
Uniprot:E7F350
Length = 995
Score = 675 (242.7 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 157/389 (40%), Positives = 233/389 (59%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G LD+ A +R TSVYLV++ I MLP+ L E++CSL +RL FSVIW+
Sbjct: 540 IADVSYFVKEGNALDELAGQRATSVYLVQKVIPMLPRLLCEELCSLNPLTDRLTFSVIWK 599
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMDP--------------LTTDL 118
L+PE +I+S + ++VI SC LSY AQ+ +D + P + +
Sbjct: 600 LSPEGKILSEWFGRTVICSCIKLSYDHAQSMIDAPDKHFSPEELPACSPNHSIIEIQEAV 659
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++++AK++R +R E GAL L ++ F +D E+ P +YQ R++N++VEEFML A
Sbjct: 660 LNLHNIAKQLRAQRFEGGALRLDQLKLSFTLDKESSMPQGCYVYQYRDSNKLVEEFMLLA 719
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++V QI R +P +LLRRHP P +M++ + +GL++D SSS AL SL+ +G
Sbjct: 720 NMAVGHQIYRSYPELALLRRHPPPQTKMVDDMQEFFDQMGLDIDFSSSGALHRSLNENLG 779
Query: 239 DDPYF---NKLIRILATRCMTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADV 294
DD Y ++I + +R M AVYFC+G L + F HY L PLYTHFTSPIRRYADV
Sbjct: 780 DDEYTAARKEVITHMCSRPMQMAVYFCAGALKDEKLFRHYALNVPLYTHFTSPIRRYADV 839
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK-RP 353
+VHRLL ASL SV + ++ A + N R ++ S EL ++ ++ P
Sbjct: 840 IVHRLLGASLNCGPRLSVSGE--EVHQQASHCNDRKTASKRVQELSSELFFAVFVKECGP 897
Query: 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
D+EA ++ + F V V ++G++ +Y
Sbjct: 898 LDSEAMVMGVLDQSFDVLVLRYGVQKRIY 926
Score = 37 (18.1 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 1 MKLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERR 44
+ L +L+ + T P + + K G V++VE++
Sbjct: 335 VSLNDKALLTTQSVEHATTSNTPASSSERTTQKNGKVVFIVEKK 378
>UNIPROTKB|E2QZ40 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
Ensembl:ENSCAFT00000017770 Uniprot:E2QZ40
Length = 870
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 159/393 (40%), Positives = 238/393 (60%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+PLD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW
Sbjct: 408 IADVSYFVPEGSPLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLHPMSDKLTFSVIWT 467
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD--SRL----MDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ ++ ++ + P++ + +
Sbjct: 468 LTPEGKILGEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPEEELPPISPEHTSEEVHRAV 527
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML A
Sbjct: 528 LNLHKIAKELRKQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLA 587
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA + R FP +LLRRHP P +ML L+ +GL +D SS+ AL SL G
Sbjct: 588 NMAVAHKTHRTFPERALLRRHPPPQTKMLNDLMEFCDQMGLPMDFSSAGALNKSLTETFG 647
Query: 239 DDPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +L C M A+YFCSG L +F HY L PLYTHFTSPIRR+ADV
Sbjct: 648 DDKYSLARKEVLTNMCSRPMQMALYFCSGVLQDQAQFRHYALNVPLYTHFTSPIRRFADV 707
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----- 349
+VHRLL+A+LG +LP + D L AD+ N R +MAS+ EL T ++F
Sbjct: 708 LVHRLLAAALGYRELPDMEPDT--LQKQADHCNDR----RMASKRVQELSTGLFFAILVK 761
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
P ++EA ++ + + F V V ++G++ +Y
Sbjct: 762 ESGPLESEAMVLGVLNQAFDVLVLRYGVQKRIY 794
>UNIPROTKB|F6XKS7 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
CTD:129563 OMA:VQKRVYC EMBL:AAEX03014445 Ensembl:ENSCAFT00000017770
EMBL:AAEX03014441 EMBL:AAEX03014442 EMBL:AAEX03014443
EMBL:AAEX03014444 RefSeq:XP_852722.1 ProteinModelPortal:F6XKS7
GeneID:610194 KEGG:cfa:610194 Uniprot:F6XKS7
Length = 879
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 159/393 (40%), Positives = 238/393 (60%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+PLD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW
Sbjct: 408 IADVSYFVPEGSPLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLHPMSDKLTFSVIWT 467
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD--SRL----MDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ ++ ++ + P++ + +
Sbjct: 468 LTPEGKILGEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPEEELPPISPEHTSEEVHRAV 527
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML A
Sbjct: 528 LNLHKIAKELRKQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLA 587
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA + R FP +LLRRHP P +ML L+ +GL +D SS+ AL SL G
Sbjct: 588 NMAVAHKTHRTFPERALLRRHPPPQTKMLNDLMEFCDQMGLPMDFSSAGALNKSLTETFG 647
Query: 239 DDPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +L C M A+YFCSG L +F HY L PLYTHFTSPIRR+ADV
Sbjct: 648 DDKYSLARKEVLTNMCSRPMQMALYFCSGVLQDQAQFRHYALNVPLYTHFTSPIRRFADV 707
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----- 349
+VHRLL+A+LG +LP + D L AD+ N R +MAS+ EL T ++F
Sbjct: 708 LVHRLLAAALGYRELPDMEPDT--LQKQADHCNDR----RMASKRVQELSTGLFFAILVK 761
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
P ++EA ++ + + F V V ++G++ +Y
Sbjct: 762 ESGPLESEAMVLGVLNQAFDVLVLRYGVQKRIY 794
>UNIPROTKB|Q8IYB7 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0051306 "mitotic sister
chromatid separation" evidence=IMP] [GO:0008285 "negative
regulation of cell proliferation" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 Orphanet:654
GO:GO:0051306 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
EMBL:AK094293 EMBL:AL834174 EMBL:BX648325 EMBL:AF443854
EMBL:AC019130 EMBL:AC068134 EMBL:AC093374 EMBL:AC138658
EMBL:BC026166 EMBL:BC036113 IPI:IPI00167753 IPI:IPI00217752
IPI:IPI00385160 IPI:IPI00465384 IPI:IPI00880048
RefSeq:NP_001244210.1 RefSeq:NP_001244211.1 RefSeq:NP_689596.4
UniGene:Hs.732236 ProteinModelPortal:Q8IYB7 IntAct:Q8IYB7
MINT:MINT-1386910 STRING:Q8IYB7 PhosphoSite:Q8IYB7 DMDM:296439471
PaxDb:Q8IYB7 PRIDE:Q8IYB7 DNASU:129563 Ensembl:ENST00000273009
Ensembl:ENST00000325385 Ensembl:ENST00000360410
Ensembl:ENST00000390005 Ensembl:ENST00000409307
Ensembl:ENST00000409401 Ensembl:ENST00000433430
Ensembl:ENST00000445090 GeneID:129563 KEGG:hsa:129563
UCSC:uc010fxz.3 CTD:129563 GeneCards:GC02P232825 H-InvDB:HIX0002923
HGNC:HGNC:28648 HPA:HPA035797 MIM:267000 MIM:614184
neXtProt:NX_Q8IYB7 Orphanet:2849 PharmGKB:PA162383714
HOVERGEN:HBG107810 InParanoid:Q8IYB7 OMA:HIYEYRE ChiTaRS:DIS3L2
GenomeRNAi:129563 NextBio:82609 ArrayExpress:Q8IYB7 Bgee:Q8IYB7
CleanEx:HS_DIS3L2 Genevestigator:Q8IYB7 Uniprot:Q8IYB7
Length = 885
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 161/393 (40%), Positives = 236/393 (60%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW
Sbjct: 410 IADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWT 469
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD------SRLMDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ ++ ++ + P++ + +
Sbjct: 470 LTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPAKELPPISPEHSSEEVHQAV 529
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +AK++RQ+R GAL L ++ F +D ET P +Y+ RE+N++VEEFML A
Sbjct: 530 LNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLA 589
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA +I R FP +LLRRHP P ML L+ +GL +D SS+ AL SL + G
Sbjct: 590 NMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFG 649
Query: 239 DDPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +L C M A+YFCSG L P +F HY L PLYTHFTSPIRR+ADV
Sbjct: 650 DDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADV 709
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----- 349
+VHRLL+A+LG + + D L AD+ N R +MAS+ EL T ++F
Sbjct: 710 LVHRLLAAALGYRERLDMAPDT--LQKQADHCNDR----RMASKRVQELSTSLFFAVLVK 763
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
P ++EA ++ I F V V ++G++ +Y
Sbjct: 764 ESGPLESEAMVMGILKQAFDVLVLRYGVQKRIY 796
>UNIPROTKB|Q5R5N8 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9601 "Pongo
abelii" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0000175 GO:GO:0000177 CTD:115752 HOGENOM:HOG000191945
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:CR860819
RefSeq:NP_001126723.1 UniGene:Pab.8044 ProteinModelPortal:Q5R5N8
GeneID:100173724 KEGG:pon:100173724 Uniprot:Q5R5N8
Length = 1054
Score = 501 (181.4 bits), Expect = 8.3e-67, Sum P(2) = 8.3e-67
Identities = 116/284 (40%), Positives = 167/284 (58%)
Query: 111 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 170
++ L + + +A+ +R +R GAL L EV+ Q+D + + D+ Q E ++
Sbjct: 622 LEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVRVQLDDKKNIH-DLIPKQPLEVHET 680
Query: 171 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 230
V E M+ AN VA++I FP +LLR+HP P +E L A A G +D S+K LA
Sbjct: 681 VAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLA 740
Query: 231 DSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 289
DSLD A G DP N+L+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIR
Sbjct: 741 DSLDNANGPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIR 800
Query: 290 RYADVVVHRLLSASLGIYKLPSV----FQDRPQLTSIADNLNYRHRNAQMASRGSVELHT 345
RY+D+VVHRLL A++ K + F ++ L + ++N R+R AQ + + S EL
Sbjct: 801 RYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHINNRNRAAQHSQKQSTELFQ 859
Query: 346 LIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
+YF+ + TE R I IR+NG +VF+P+FGI+G YL
Sbjct: 860 CMYFKDKDPATEERCISDGVIYSIRANGVLVFIPRFGIKGAAYL 903
Score = 216 (81.1 bits), Expect = 8.3e-67, Sum P(2) = 8.3e-67
Identities = 51/133 (38%), Positives = 75/133 (56%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A S++WEL + EI Y +++I+S L Y AQ +D + + D+
Sbjct: 554 VDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNL---SVVDDIPEF 610
Query: 122 NSLAKKMRQRRIE 134
L +K RQ ++E
Sbjct: 611 KDLDEKSRQAKLE 623
Score = 38 (18.4 bits), Expect = 4.5e-48, Sum P(2) = 4.5e-48
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 77 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 118
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDI 277
Score = 37 (18.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 164 IREANQMVEEFMLAANVSV 182
++E + VEE LA V V
Sbjct: 997 VKEVTKSVEEAQLAQEVKV 1015
>UNIPROTKB|E1C372 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0051306 "mitotic sister chromatid
separation" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:VQKRVYC EMBL:AADN02020657
EMBL:AADN02020658 EMBL:AADN02020659 EMBL:AADN02020660
EMBL:AADN02020661 EMBL:AADN02020662 EMBL:AADN02020663
IPI:IPI00578279 Ensembl:ENSGALT00000012599 Uniprot:E1C372
Length = 875
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 158/389 (40%), Positives = 232/389 (59%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV T LD AS+R TSVYLV++ I MLPK L E++CSL +RL FSV+W+
Sbjct: 413 IADVSYFVLEETALDRVASERATSVYLVQKVIPMLPKLLCEELCSLNPMRDRLTFSVMWK 472
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD-SRLMDP--------------LTTDL 118
+TPE +I+ + ++VI SCA LSY AQ+ +++ ++ P + +
Sbjct: 473 VTPEGKILDEWFGRTVICSCAKLSYDHAQSMIENPGKVFSPEELPPISPQHSVAEIQQAV 532
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +A+ +R++R GAL L ++ F +D E+ P +YQ R++N++VEEFML A
Sbjct: 533 LNLHHIARHLRKQRFIDGALRLDQLKLSFTLDQESGMPQGCYIYQYRDSNKLVEEFMLLA 592
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA QI R FP +LLRRHP P ++L L+ VGL +D SS+ +L SL+ G
Sbjct: 593 NMAVAHQIYRSFPEQALLRRHPPPQSKLLNDLMEFCHQVGLEIDFSSAGSLHKSLNETFG 652
Query: 239 DDPYFNKLIRILA---TRCMTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADV 294
D Y +L +R M A+YFC+G L F HY L P YTHFTSPIRRYADV
Sbjct: 653 ADKYSEARKEVLTNMFSRPMQMALYFCTGVLKDETLFRHYALNVPFYTHFTSPIRRYADV 712
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK-RP 353
VVHRLLSASLGI P + ++ + A++ N R ++ S +L ++ R+ P
Sbjct: 713 VVHRLLSASLGISS-P-IKMEKEAIQRQAEHCNDRKMASKRVQELSTDLFFAVFVRECGP 770
Query: 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
++EA ++ + + F V V KFG++ +Y
Sbjct: 771 LESEAMVMGVLNEAFDVLVLKFGVQKRIY 799
>DICTYBASE|DDB_G0278757 [details] [associations]
symbol:DDB_G0278757 "DIS3-like exonuclease 2"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0278757 GO:GO:0003723 EMBL:AAFI02000024
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
RefSeq:XP_641919.1 ProteinModelPortal:Q54XT5
EnsemblProtists:DDB0206173 GeneID:8621677 KEGG:ddi:DDB_G0278757
InParanoid:Q54XT5 OMA:EICTIDP ProtClustDB:CLSZ2447996
Uniprot:Q54XT5
Length = 1343
Score = 461 (167.3 bits), Expect = 4.9e-66, Sum P(2) = 4.9e-66
Identities = 106/277 (38%), Positives = 157/277 (56%)
Query: 121 MNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV 180
+ S+AK MR RI GA T+ +++ F +D + +P+ +Y I E+N +VEE+ML AN+
Sbjct: 999 LRSIAKHMRSNRIANGAFTIHPSKLAFALD-DKGNPVSTKIYPIYESNNLVEEYMLLANM 1057
Query: 181 SVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD 240
VAE+I + FP SLLRRHPSP + LE + + G +D SSS +S+ +
Sbjct: 1058 RVAERIGKFFPSNSLLRRHPSPNENKLESFISFCSKHGFEIDSSSSLTFGESIKKLKDTC 1117
Query: 241 PYFNKL--IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR 298
N L I++L+ R M A YFCS + ++ HY L AP YTHFTSPIRRYAD++VHR
Sbjct: 1118 TDINILMAIQLLSIRSMKLAEYFCSNNEEEEDWRHYALNAPFYTHFTSPIRRYADIIVHR 1177
Query: 299 LLSASLGIYKLPSVFQDR-PQ---LTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPT 354
LL S+ + K ++ P +T+I N N + NA+ A S ++ + PT
Sbjct: 1178 LLDLSIQVEKNNRNHTEQLPSSESITAICKNCNEKKLNARKAQERSDKVFLCVLLENHPT 1237
Query: 355 DTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGS 391
TEA + ++ + VP+FG E VYL ++G+
Sbjct: 1238 TTEAVALNTGASYIVCIVPQFGSEQKVYLDDLQKEGT 1274
Score = 254 (94.5 bits), Expect = 4.9e-66, Sum P(2) = 4.9e-66
Identities = 61/147 (41%), Positives = 90/147 (61%)
Query: 1 MKLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLR 60
++L+ + + IADV++FV P T LD A ++ T+VYLV++ I MLP L+E++CSL
Sbjct: 856 IELEDGNFEVGVHIADVSHFVKPDTALDKCAQRKATTVYLVQKAIPMLPSLLSEELCSLN 915
Query: 61 ADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD---SRLMDPLTTD 117
VERLAFSVIW+L+P EI+ + +SVIKS + L+Y AQA +DD + D + D
Sbjct: 916 MGVERLAFSVIWKLSPTGEILDEWFGRSVIKSFSRLTYAIAQALIDDKITNAWEDWIPAD 975
Query: 118 LRNMNSLAKKMRQR--RIERGALTLAS 142
+ L Q R+++G L L S
Sbjct: 976 -KMRKDLGPNTAQHIARVKKGVLGLRS 1001
>UNIPROTKB|Q0P4R5 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InterPro:IPR022966 PROSITE:PS01175 EMBL:BC121935
RefSeq:NP_001072835.1 UniGene:Str.52789 ProteinModelPortal:Q0P4R5
STRING:Q0P4R5 GeneID:780296 KEGG:xtr:780296 Xenbase:XB-GENE-1013178
Uniprot:Q0P4R5
Length = 1039
Score = 477 (173.0 bits), Expect = 7.2e-65, Sum P(2) = 7.2e-65
Identities = 111/287 (38%), Positives = 168/287 (58%)
Query: 104 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 163
+ D RL + L + + +A R RR GAL L EV+ Q+ E H D+ Q
Sbjct: 607 KQDPVRL-EQLLWAVGKLTEVAHATRMRRDMSGALELEGVEVRVQLG-EKHSIDDLVPKQ 664
Query: 164 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 223
+ ++ + E M+ AN VA++I +P +LLR HP +E + L A A G ++D
Sbjct: 665 PLQMHETIAECMILANHWVAKKIWECYPQHALLRLHPPARQEFFQELKECAKARGFSIDT 724
Query: 224 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 282
S+KALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF+HYGLA YT
Sbjct: 725 RSNKALADSLDQANDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEFYHYGLALEKYT 784
Query: 283 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 342
HFTSPIRRYAD+VVHRLL A++ ++ ++ L + ++N R+R AQ + S E
Sbjct: 785 HFTSPIRRYADIVVHRLLLAAVNKGPKDNLLGNK-DLEELCRHINVRNRAAQHCQKQSTE 843
Query: 343 LHTLIYFRKRPTDTEARIVK------IRSNGFIVFVPKFGIEGPVYL 383
L ++F+ + D++ R + IR+NG ++F+P++GI+G YL
Sbjct: 844 LFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFLPRYGIKGAAYL 890
Score = 222 (83.2 bits), Expect = 7.2e-65, Sum P(2) = 7.2e-65
Identities = 53/118 (44%), Positives = 69/118 (58%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL L + IADVT+FV P T D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 486 KLPSGHLELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLPLILSADLCSLLG 545
Query: 62 DVERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDL 118
V+R A SVIWE+ EI Y +++I+S LSY AQ MD ++PL T++
Sbjct: 546 GVDRYAVSVIWEMDSSTYEIRRVWYGRTIIRSSYKLSYEVAQQLMDGD--LEPLNTEM 601
>UNIPROTKB|Q8TF46 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP;IDA] [GO:0016075
"rRNA catabolic process" evidence=IMP;IDA] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005886
GO:GO:0005813 GO:GO:0003723 GO:GO:0016075 EMBL:CH471082
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 EMBL:AB075835 EMBL:AK095407 EMBL:AC055855
EMBL:BC014124 EMBL:BC022089 IPI:IPI00291003 IPI:IPI00295876
IPI:IPI00879677 IPI:IPI00879828 RefSeq:NP_001137160.1
RefSeq:NP_588616.1 UniGene:Hs.446251 ProteinModelPortal:Q8TF46
SMR:Q8TF46 IntAct:Q8TF46 STRING:Q8TF46 PhosphoSite:Q8TF46
DMDM:166201903 PaxDb:Q8TF46 PeptideAtlas:Q8TF46 PRIDE:Q8TF46
DNASU:115752 Ensembl:ENST00000319194 Ensembl:ENST00000319212
GeneID:115752 KEGG:hsa:115752 UCSC:uc002app.3 UCSC:uc002apq.2
GeneCards:GC15P066585 HGNC:HGNC:28698 HPA:HPA041805 MIM:614183
neXtProt:NX_Q8TF46 PharmGKB:PA162383675 InParanoid:Q8TF46
OMA:IPRFGIK ChiTaRS:DIS3L GenomeRNAi:115752 NextBio:79674
ArrayExpress:Q8TF46 Bgee:Q8TF46 CleanEx:HS_DIS3L
Genevestigator:Q8TF46 Uniprot:Q8TF46
Length = 1054
Score = 482 (174.7 bits), Expect = 9.5e-65, Sum P(2) = 9.5e-65
Identities = 113/284 (39%), Positives = 165/284 (58%)
Query: 111 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 170
++ L + + +A+ +R +R GAL L EV Q+D + + D+ Q E ++
Sbjct: 622 LEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQLDDKKNIH-DLIPKQPLEVHET 680
Query: 171 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 230
V E M+ AN VA++I FP +LLR+HP P +E L A A G +D S+K LA
Sbjct: 681 VAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLA 740
Query: 231 DSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 289
DSLD A DP N+L+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIR
Sbjct: 741 DSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIR 800
Query: 290 RYADVVVHRLLSASLGIYKLPSV----FQDRPQLTSIADNLNYRHRNAQMASRGSVELHT 345
RY+D+VVHRLL A++ K + F ++ L + ++N R++ AQ + + S EL
Sbjct: 801 RYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHINNRNQAAQHSQKQSTELFQ 859
Query: 346 LIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
+YF+ + TE R I IR+NG ++F+P+FGI+G YL
Sbjct: 860 CMYFKDKDPATEERCISDGVIYSIRTNGVLLFIPRFGIKGAAYL 903
Score = 216 (81.1 bits), Expect = 9.5e-65, Sum P(2) = 9.5e-65
Identities = 51/133 (38%), Positives = 75/133 (56%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A S++WEL + EI Y +++I+S L Y AQ +D + + D+
Sbjct: 554 VDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNL---SVVDDIPEF 610
Query: 122 NSLAKKMRQRRIE 134
L +K RQ ++E
Sbjct: 611 KDLDEKSRQAKLE 623
Score = 38 (18.4 bits), Expect = 5.1e-46, Sum P(2) = 5.1e-46
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 77 EAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDL 118
EA I S RY + ++ + +EA R+ + D L +D+
Sbjct: 235 EAGIKSGRYIQGILNVNKHRAQIEAFVRLQGASSKDSDLVSDI 277
Score = 37 (18.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 164 IREANQMVEEFMLAANVSV 182
++E + VEE LA V V
Sbjct: 997 VKEVTKSVEEAQLAQEVKV 1015
>UNIPROTKB|Q6GN11 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8355
"Xenopus laevis" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:BC073711
RefSeq:NP_001086021.1 UniGene:Xl.3437 ProteinModelPortal:Q6GN11
GeneID:444450 KEGG:xla:444450 Xenbase:XB-GENE-1013183
Uniprot:Q6GN11
Length = 1040
Score = 495 (179.3 bits), Expect = 1.0e-64, Sum P(2) = 1.0e-64
Identities = 113/287 (39%), Positives = 168/287 (58%)
Query: 104 RMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ 163
+ D +RL L + M +A R RR GAL L EV+ Q+ E H D+ Q
Sbjct: 608 KQDPARLQQLLWA-VGKMTEVAHATRMRRNMSGALELEGVEVRVQLG-EKHSIDDLVPKQ 665
Query: 164 IREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDV 223
+ ++ + E M+ AN VA++I +P +LLR HP P +E + L A A G ++D
Sbjct: 666 PLQVHETIAECMILANHWVAKKIWESYPQHALLRLHPPPRQEFFQELKECAKARGFSIDT 725
Query: 224 SSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYT 282
S+KALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF+HYGLA YT
Sbjct: 726 RSNKALADSLDQAHDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEFYHYGLALEKYT 785
Query: 283 HFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE 342
HFTSPIRRYAD+VVHRLL A++ + ++ L + ++N R+R AQ + S E
Sbjct: 786 HFTSPIRRYADIVVHRLLLAAVNKGPKDHLLGNK-DLEELCRHINARNRAAQQCQKQSTE 844
Query: 343 LHTLIYFRKRPTDTEARIVK------IRSNGFIVFVPKFGIEGPVYL 383
L ++F+ + D++ R + IR+NG ++F+P++GI+G YL
Sbjct: 845 LFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFIPRYGIKGAAYL 891
Score = 202 (76.2 bits), Expect = 1.0e-64, Sum P(2) = 1.0e-64
Identities = 50/116 (43%), Positives = 67/116 (57%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L L + IADVT+FV T D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 488 LPSGDLELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLPLILSADLCSLLGA 547
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD 117
V+R A SVIWE+ EI Y +++I+S LSY AQ +D ++PL+T+
Sbjct: 548 VDRYAVSVIWEMDCSTYEIRRVWYGRTIIRSSYKLSYEVAQQLLDGD--LEPLSTE 601
Score = 37 (18.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 309 LPSVFQDRPQL--TSIADNLNYRHRNAQMASRGSVEL 343
LPS PQL T + + AQ+A G+ EL
Sbjct: 971 LPSA--SNPQLLRTELVKEVTRTAVEAQLAVEGAAEL 1005
>UNIPROTKB|H7C440 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:AC013435
GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175 EMBL:AC019130
EMBL:AC068134 EMBL:AC093374 EMBL:AC138658 HGNC:HGNC:28648
ChiTaRS:DIS3L2 EMBL:AC105461 ProteinModelPortal:H7C440
Ensembl:ENST00000424049 Bgee:H7C440 Uniprot:H7C440
Length = 383
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 148/344 (43%), Positives = 212/344 (61%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW
Sbjct: 45 IADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWT 104
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD------SRLMDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ ++ ++ + P++ + +
Sbjct: 105 LTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPAKELPPISPEHSSEEVHQAV 164
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +AK++RQ+R GAL L ++ F +D ET P +Y+ RE+N++VEEFML A
Sbjct: 165 LNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLA 224
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA +I R FP +LLRRHP P ML L+ +GL +D SS+ AL SL + G
Sbjct: 225 NMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFG 284
Query: 239 DDPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +L C M A+YFCSG L P +F HY L PLYTHFTSPIRR+ADV
Sbjct: 285 DDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADV 344
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASR 338
+VHRLL+A+LG + + D L AD+ N R +MAS+
Sbjct: 345 LVHRLLAAALGYRERLDMAPDT--LQKQADHCNDR----RMASK 382
>DICTYBASE|DDB_G0268186 [details] [associations]
symbol:DDB_G0268186 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0268186 EMBL:AAFI02000003
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 RefSeq:XP_647622.1 EnsemblProtists:DDB0189843
GeneID:8616436 KEGG:ddi:DDB_G0268186 InParanoid:Q55FB1 OMA:YMILANS
Uniprot:Q55FB1
Length = 1504
Score = 440 (159.9 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 104/291 (35%), Positives = 164/291 (56%)
Query: 117 DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDT-ETHDPLDIGMYQIREANQMVEEFM 175
DL + S+ +++++ R++ GAL L S EV+F+ ++ ++ P I + E + +V E+M
Sbjct: 882 DLLELCSIFRQLKKERVKNGALELESIEVRFKFNSKDSSQPKKIILKNDLEIHHLVAEYM 941
Query: 176 LAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDR 235
+ AN VA +I FP +LLRRHP P + + + + G L ++K L +SL
Sbjct: 942 ILANSHVATKIHSVFPSSALLRRHPKPNQIDFKSIKSYFSYCGFQLLTKTNKQLQESLAS 1001
Query: 236 AV--GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYAD 293
AV G D Y NK++++ +++AVYF +G + EF+HYGLA YTHFTSPIRRY+D
Sbjct: 1002 AVDSGGDVYVNKILKLKIVNVVSEAVYFSTGSVNVSEFYHYGLAIDKYTHFTSPIRRYSD 1061
Query: 294 VVVHRLLSASL----GIYK-LPSVFQ----------DRPQLTSIADNLNYRHRNAQMASR 338
++VHR L SL G + S+ D +T + D+LN R+R ++ R
Sbjct: 1062 IIVHRQLWNSLNQSNGKFGGKSSIIDNNNNNDQSSYDNFSITQLTDHLNIRNRASKTVQR 1121
Query: 339 GSVELHTLIYFRKRPTDTEARIVK-IRSNGFIVFVPKFGIEGPVYLTPRGQ 388
+ EL +YF+ P + I+ IRSNGF+ F+P+FG+ V+L Q
Sbjct: 1122 DATELFQSLYFKLFPKENVLAIITDIRSNGFVCFIPEFGLRSRVFLKKDSQ 1172
Score = 225 (84.3 bits), Expect = 1.5e-60, Sum P(2) = 1.5e-60
Identities = 54/132 (40%), Positives = 80/132 (60%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV++FV G+PLD EA +RGT++YL +RR DMLP L+ED+CSLR + R A SV+W+
Sbjct: 748 IADVSHFVKEGSPLDLEAKRRGTTIYLPDRRFDMLPAVLSEDVCSLRGGLPRCAMSVVWQ 807
Query: 74 L--TPEA--EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMR 129
P EI+ T + +++I S A L Y AQ +D +++D D A+
Sbjct: 808 FKRNPNKTYEIVDTWFGRTIIHSSAELHYQLAQDIID-GKIVDGKDKDSDVTGGGARAGY 866
Query: 130 QRRIERGALTLA 141
+ RI G +T++
Sbjct: 867 KHRIFNG-ITIS 877
>GENEDB_PFALCIPARUM|MAL13P1.289 [details] [associations]
symbol:MAL13P1.289 "mitotic control protein
dis3 homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 RefSeq:XP_001350300.2
EnsemblProtists:MAL13P1.289:mRNA GeneID:813851 KEGG:pfa:MAL13P1.289
EuPathDB:PlasmoDB:PF3D7_1359300 HOGENOM:HOG000281701
ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 617 (222.3 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 152/423 (35%), Positives = 236/423 (55%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV +P+D EASKR T+VYL+ +R+DMLPK LT ++CSL ERL +S I+
Sbjct: 641 IADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTNLCSLVEGEERLTYSCIFC 700
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
+ +II K +IKS + SY +AQ +DD LR +N +AK ++Q+
Sbjct: 701 FNKDFDIIDISVKKCIIKSNKSFSYEQAQNVIDDKNDQSDTAKSLRLLNKIAKHLKQKWS 760
Query: 134 ERGALTL-ASAEVKFQIDTETHDPL-DIGMYQIREANQMVEEFMLAANVSVAEQILRQFP 191
GAL L + EV F+ + ++ Y E N+++E FML AN SVA I + F
Sbjct: 761 NDGALELRGNTEVLFEFEANDFSKAKNLKPYVCYETNKLIEAFMLLANRSVARIIFQNFK 820
Query: 192 LCSLLRRHPSPTKEMLEPL---LRTAAAVGLNLDVSSSKALADSLDRA-VGDDPYFNKLI 247
S+LRRHP P E L+ L L+T + ++SK L+ S++ + +D + ++
Sbjct: 821 AASVLRRHPPPKHEYLKELNDYLKTIQV--FDFKYNTSKDLSHSINNINLKNDNILSNIL 878
Query: 248 RILATRCMTQAVYFCSGDLTPPEF-HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
+++ T+CM +AV+ ++ + HYGLAA +YT FTSPIRRYAD++VHR+L+ I
Sbjct: 879 KVMVTKCMNEAVFISGYNVHNNDMLRHYGLAADIYTFFTSPIRRYADIMVHRILNHIYQI 938
Query: 307 YKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTD-TEARIVKIRS 365
+L + D L LN ++RNA+ ASR SV+ + +Y +K T A I ++
Sbjct: 939 EELDKKYLDIIYLNKQVALLNDKYRNARFASRASVDFFSYLYIKKIGNQITNAVITNLKK 998
Query: 366 NGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMD---GNLSY-SVLQTVNIH 421
NG +F+ + EG YL K + DE++++ +K+D L + S + +H
Sbjct: 999 NGIQIFLIDYFTEGICYL-----KRKDGFLFDEKKKRFIKIDKYKNELFHLSFYDKIQVH 1053
Query: 422 MEV 424
M+V
Sbjct: 1054 MQV 1056
>UNIPROTKB|Q8IDB6 [details] [associations]
symbol:MAL13P1.289 "Mitotic control protein dis3 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0004527 GO:GO:0000178
GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966 PROSITE:PS01175
KO:K12585 RefSeq:XP_001350300.2 EnsemblProtists:MAL13P1.289:mRNA
GeneID:813851 KEGG:pfa:MAL13P1.289 EuPathDB:PlasmoDB:PF3D7_1359300
HOGENOM:HOG000281701 ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 617 (222.3 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 152/423 (35%), Positives = 236/423 (55%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV +P+D EASKR T+VYL+ +R+DMLPK LT ++CSL ERL +S I+
Sbjct: 641 IADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTNLCSLVEGEERLTYSCIFC 700
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
+ +II K +IKS + SY +AQ +DD LR +N +AK ++Q+
Sbjct: 701 FNKDFDIIDISVKKCIIKSNKSFSYEQAQNVIDDKNDQSDTAKSLRLLNKIAKHLKQKWS 760
Query: 134 ERGALTL-ASAEVKFQIDTETHDPL-DIGMYQIREANQMVEEFMLAANVSVAEQILRQFP 191
GAL L + EV F+ + ++ Y E N+++E FML AN SVA I + F
Sbjct: 761 NDGALELRGNTEVLFEFEANDFSKAKNLKPYVCYETNKLIEAFMLLANRSVARIIFQNFK 820
Query: 192 LCSLLRRHPSPTKEMLEPL---LRTAAAVGLNLDVSSSKALADSLDRA-VGDDPYFNKLI 247
S+LRRHP P E L+ L L+T + ++SK L+ S++ + +D + ++
Sbjct: 821 AASVLRRHPPPKHEYLKELNDYLKTIQV--FDFKYNTSKDLSHSINNINLKNDNILSNIL 878
Query: 248 RILATRCMTQAVYFCSGDLTPPEF-HHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
+++ T+CM +AV+ ++ + HYGLAA +YT FTSPIRRYAD++VHR+L+ I
Sbjct: 879 KVMVTKCMNEAVFISGYNVHNNDMLRHYGLAADIYTFFTSPIRRYADIMVHRILNHIYQI 938
Query: 307 YKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTD-TEARIVKIRS 365
+L + D L LN ++RNA+ ASR SV+ + +Y +K T A I ++
Sbjct: 939 EELDKKYLDIIYLNKQVALLNDKYRNARFASRASVDFFSYLYIKKIGNQITNAVITNLKK 998
Query: 366 NGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMD---GNLSY-SVLQTVNIH 421
NG +F+ + EG YL K + DE++++ +K+D L + S + +H
Sbjct: 999 NGIQIFLIDYFTEGICYL-----KRKDGFLFDEKKKRFIKIDKYKNELFHLSFYDKIQVH 1053
Query: 422 MEV 424
M+V
Sbjct: 1054 MQV 1056
>POMBASE|SPAC2C4.07c [details] [associations]
symbol:SPAC2C4.07c "ribonuclease II (RNB) family
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006401 "RNA catabolic process" evidence=ISM]
[GO:0033554 "cellular response to stress" evidence=IEP]
InterPro:IPR001900 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
PomBase:SPAC2C4.07c GO:GO:0005829 EMBL:CU329670 GO:GO:0033554
GO:GO:0003723 GO:GO:0006401 GO:GO:0004527 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 EMBL:AB027825
PIR:T38518 RefSeq:NP_594510.1 ProteinModelPortal:O14040
STRING:O14040 EnsemblFungi:SPAC2C4.07c.1 GeneID:2542643
KEGG:spo:SPAC2C4.07c OMA:WIISHEE OrthoDB:EOG4MGWGN NextBio:20803692
Uniprot:O14040
Length = 927
Score = 565 (203.9 bits), Expect = 4.8e-54, P = 4.8e-54
Identities = 137/351 (39%), Positives = 199/351 (56%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV P + LD EA+ R T+VYLV++ I MLP L E +CSL +VERLAFSV W+
Sbjct: 480 IADVTHFVKPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWK 539
Query: 74 LTPEAEIISTR-YTKSVIKSCAALSYVEAQARMD----DSRLMDPL---------TTDLR 119
L + I R + K+VIK+CA L+Y EAQ ++ D + P+ T +
Sbjct: 540 LDSNGKEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSIL 599
Query: 120 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 179
+ +++K+R+ R +GA+ + S E+KFQ+D E P +Y+ +AN ++EEFML AN
Sbjct: 600 TLCEISRKLRKDRFAKGAVEINSTELKFQLD-EYGMPNKCEVYEQTDANHLIEEFMLLAN 658
Query: 180 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 239
SVAE I + F SLLRRH SP ++ + ++ + D SSS A S+ R
Sbjct: 659 RSVAEHISKNFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRST 718
Query: 240 -DPYFNKLIRILATRCMTQAVYFCSGDL-TPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
+ +L +A R + +A YFC+GD ++HHY L+ YTHFTSPIRRY D++VH
Sbjct: 719 FNEELVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDIIVH 778
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIY 348
RLL SL K S D+ + +A + N + + S +L +Y
Sbjct: 779 RLLERSL---KNTSPGIDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVY 826
Score = 381 (139.2 bits), Expect = 3.8e-34, P = 3.8e-34
Identities = 99/301 (32%), Positives = 153/301 (50%)
Query: 116 TDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFM 175
T + + +++K+R+ R +GA+ + S E+KFQ+D E P +Y+ +AN ++EEFM
Sbjct: 596 TSILTLCEISRKLRKDRFAKGAVEINSTELKFQLD-EYGMPNKCEVYEQTDANHLIEEFM 654
Query: 176 LAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDR 235
L AN SVAE I + F SLLRRH SP ++ + ++ + D SSS A S+ R
Sbjct: 655 LLANRSVAEHISKNFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVR 714
Query: 236 AVGD-DPYFNKLIRILATRCMTQAVYFCSGDL-TPPEFHHYGLAAPLYTHFTSPIRRYAD 293
+ +L +A R + +A YFC+GD ++HHY L+ YTHFTSPIRRY D
Sbjct: 715 LRSTFNEELVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPD 774
Query: 294 VVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR--- 350
++VHRLL SL K S D+ + +A + N + + S +L +Y
Sbjct: 775 IIVHRLLERSL---KNTSPGIDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYC 831
Query: 351 ----KRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKM 406
K+ +A +I N V++ ++GI V L+ + S D+ KI
Sbjct: 832 KKHDKKSMPVQAFATRISGNSIDVYISEYGISNRVDLSSDDRIKSFIVAPDDSSVKITLF 891
Query: 407 D 407
D
Sbjct: 892 D 892
>UNIPROTKB|A0JN80 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0000175
GO:GO:0000177 EMBL:BC126555 IPI:IPI00701147 RefSeq:NP_001071624.1
UniGene:Bt.10856 ProteinModelPortal:A0JN80 STRING:A0JN80
PRIDE:A0JN80 GeneID:777771 KEGG:bta:777771 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InParanoid:A0JN80 OrthoDB:EOG4229HZ NextBio:20924325
InterPro:IPR022966 PROSITE:PS01175 Uniprot:A0JN80
Length = 1053
Score = 529 (191.3 bits), Expect = 6.5e-50, P = 6.5e-50
Identities = 126/329 (38%), Positives = 190/329 (57%)
Query: 65 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
R A+ + +E + ++ + SV+K ++ ++R ++L + L +R + +
Sbjct: 583 RSAYKLFYEAAQD--LLDGNF--SVVKDIPEFKDLDEKSRQ--AKL-EELVWAIRKLTDI 635
Query: 125 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 184
A+ +R +R GAL L EV+ Q+D E + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDSCGALELEGVEVRIQLD-EKKNIHDLIPKQPLEVHETVAECMILANHWVAK 694
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 243
+I FP +LLRRHP P +E L A A G +D S+KALADSLD A +DP
Sbjct: 695 KIWESFPHQALLRRHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPIV 754
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 303
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D++VHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAA 814
Query: 304 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR- 359
+ K + ++ L + ++N R+R AQ + + S EL +YF+ + +TE R
Sbjct: 815 ISKDKKMEIQENLFSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEERC 874
Query: 360 -----IVKIRSNGFIVFVPKFGIEGPVYL 383
I IR+NG +VF+P+FGI+G YL
Sbjct: 875 ISDGVIYSIRTNGVLVFIPRFGIKGAAYL 903
Score = 212 (79.7 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 52/133 (39%), Positives = 75/133 (56%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A SV+WEL + EI Y +++I+S L Y AQ +D + + D+
Sbjct: 554 VDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNF---SVVKDIPEF 610
Query: 122 NSLAKKMRQRRIE 134
L +K RQ ++E
Sbjct: 611 KDLDEKSRQAKLE 623
Score = 38 (18.4 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 164 IREANQMVEEFMLAANVSV 182
++E + VEE LA V+V
Sbjct: 997 VKEVTRSVEEAQLAQEVAV 1015
>UNIPROTKB|F1MEA6 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
IPI:IPI00701147 InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:DAAA02027893
Ensembl:ENSBTAT00000000481 Uniprot:F1MEA6
Length = 1053
Score = 529 (191.3 bits), Expect = 6.5e-50, P = 6.5e-50
Identities = 126/329 (38%), Positives = 190/329 (57%)
Query: 65 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
R A+ + +E + ++ + SV+K ++ ++R ++L + L +R + +
Sbjct: 583 RSAYKLFYEAAQD--LLDGNF--SVVKDIPEFKDLDEKSRQ--AKL-EELVWAIRKLTDI 635
Query: 125 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 184
A+ +R +R GAL L EV+ Q+D E + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDSCGALELEGVEVRIQLD-EKKNIHDLIPKQPLEVHETVAECMILANHWVAK 694
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 243
+I FP +LLRRHP P +E L A A G +D S+KALADSLD A +DP
Sbjct: 695 KIWESFPHQALLRRHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPIV 754
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 303
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D++VHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIIVHRLLMAA 814
Query: 304 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR- 359
+ K + ++ L + ++N R+R AQ + + S EL +YF+ + +TE R
Sbjct: 815 ISKDKKMEIQENLFSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPETEERC 874
Query: 360 -----IVKIRSNGFIVFVPKFGIEGPVYL 383
I IR+NG +VF+P+FGI+G YL
Sbjct: 875 ISDGVIYSIRTNGVLVFIPRFGIKGAAYL 903
Score = 212 (79.7 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 52/133 (39%), Positives = 75/133 (56%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A SV+WEL + EI Y +++I+S L Y AQ +D + + D+
Sbjct: 554 VDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNF---SVVKDIPEF 610
Query: 122 NSLAKKMRQRRIE 134
L +K RQ ++E
Sbjct: 611 KDLDEKSRQAKLE 623
Score = 38 (18.4 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 164 IREANQMVEEFMLAANVSV 182
++E + VEE LA V+V
Sbjct: 997 VKEVTRSVEEAQLAQEVAV 1015
>ZFIN|ZDB-GENE-070209-95 [details] [associations]
symbol:dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070209-95 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CABZ01003662 IPI:IPI00493157
ProteinModelPortal:F1Q9I9 Ensembl:ENSDART00000075176 Bgee:F1Q9I9
Uniprot:F1Q9I9
Length = 1057
Score = 526 (190.2 bits), Expect = 1.4e-49, P = 1.4e-49
Identities = 120/294 (40%), Positives = 179/294 (60%)
Query: 111 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 170
M L L + +A+ +R +R + GAL L EV+ Q+D E + + + E ++
Sbjct: 614 MSELLQALETLTRVARHLRAQRDKGGALELEGVEVRAQLDEEKNITALVPKQPL-EVHET 672
Query: 171 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 230
V E M+ AN VA +I FP +LLR HP P +E L+ +A A G ++D S++ALA
Sbjct: 673 VAECMIYANHWVARKIQESFPHHALLRHHPPPKQEFFNHLIDSAKAHGFSIDTRSNRALA 732
Query: 231 DSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 289
DSL+RAV DP N+L+R++AT+ M+ A+YF +G +++HYGLA YTHFTSPIR
Sbjct: 733 DSLERAVDPRDPLVNRLLRMMATQAMSNALYFSTGSCPEEQYYHYGLALARYTHFTSPIR 792
Query: 290 RYADVVVHRLLSASLGIYK--LPS-VFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTL 346
RYADV+VHRLL A++ + K PS +L +A ++N ++R AQ + + S+EL
Sbjct: 793 RYADVIVHRLLMAAVQLEKDESPSKTLACNKELEELAQHINNKNRAAQHSQKQSIELFQC 852
Query: 347 IYFRKRPTDTEARIVK------IRSNGFIVFVPKFGIEGPVYLTPR-GQKGSGD 393
+YFR + + T+ R V +R+NGF+ FVP++G++G VYL R GQ S D
Sbjct: 853 MYFRDKDSHTDERCVADAVIYAVRANGFLAFVPQYGLKGAVYLKDREGQVISVD 906
Score = 323 (118.8 bits), Expect = 8.1e-28, P = 8.1e-28
Identities = 94/262 (35%), Positives = 139/262 (53%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV G+ D EA R T+ YL +RR DMLP L+ D+CSL V+R A SV+WE
Sbjct: 500 IADVTHFVREGSLTDLEARSRATTYYLADRRYDMLPAVLSADLCSLLGGVDRYAMSVLWE 559
Query: 74 LTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRL----MDPLTTDLRN--MNSLAK 126
L E E+ S + +++I+S L Y AQ+ ++ + ++PL R+ M+ L +
Sbjct: 560 LDAETLEVCSVWFGRTLIRSSYQLHYELAQSLLNGEEVEVPELNPLKGSQRDQKMSELLQ 619
Query: 127 KMRQ-RRIERGALTLASAEVKFQID-TETHDPLD-------IGMYQIREANQMVEEFMLA 177
+ R+ R +++ E LD + Q E ++ V E M+
Sbjct: 620 ALETLTRVARHLRAQRDKGGALELEGVEVRAQLDEEKNITALVPKQPLEVHETVAECMIY 679
Query: 178 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 237
AN VA +I FP +LLR HP P +E L+ +A A G ++D S++ALADSL+RAV
Sbjct: 680 ANHWVARKIQESFPHHALLRHHPPPKQEFFNHLIDSAKAHGFSIDTRSNRALADSLERAV 739
Query: 238 GDDPYFNKLIRILATRCMTQAV 259
DP + L+ L TQA+
Sbjct: 740 --DPR-DPLVNRLLRMMATQAM 758
>MGI|MGI:2143272 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:10090 "Mus musculus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 MGI:MGI:2143272 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
OrthoDB:EOG4229HZ InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
EMBL:AK173310 EMBL:AK029974 EMBL:BC056939 IPI:IPI00223964
IPI:IPI00881768 RefSeq:NP_001001295.2 RefSeq:NP_001171255.1
RefSeq:NP_766107.1 UniGene:Mm.268341 ProteinModelPortal:Q8C0S1
SMR:Q8C0S1 STRING:Q8C0S1 PhosphoSite:Q8C0S1 PaxDb:Q8C0S1
PRIDE:Q8C0S1 Ensembl:ENSMUST00000068367 Ensembl:ENSMUST00000113890
Ensembl:ENSMUST00000120760 Ensembl:ENSMUST00000168844 GeneID:213550
KEGG:mmu:213550 UCSC:uc009qbu.2 UCSC:uc009qbw.2
GeneTree:ENSGT00530000063106 InParanoid:Q8C0S1 NextBio:374039
Bgee:Q8C0S1 CleanEx:MM_DIS3L Genevestigator:Q8C0S1 Uniprot:Q8C0S1
Length = 1053
Score = 524 (189.5 bits), Expect = 2.2e-49, P = 2.2e-49
Identities = 133/375 (35%), Positives = 204/375 (54%)
Query: 65 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
R A+ + +E E ++ + S++ L ++ Q++ ++L + L + + +
Sbjct: 583 RSAYKLFYEAAQE--LLDGNF--SIVDDIPELKALDKQSQQ--AKL-EELVWAIGKLTDI 635
Query: 125 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 184
A+ +R +R GAL L EV+ Q+D + + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDRCGALELEGVEVRVQLD-DKKNIRDLIPKQPLEVHETVAECMILANHWVAK 694
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD-DPYF 243
+I FP +LLR+HP P +E L A A G +D S+K LADSLD A DP
Sbjct: 695 KIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPKDPLV 754
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 303
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D+VVHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAA 814
Query: 304 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR- 359
+ K + ++ L + ++N R+R AQ + + S EL +YF+ R +TE R
Sbjct: 815 ISKDKKMEIKENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDAETEERC 874
Query: 360 -----IVKIRSNGFIVFVPKFGIEGPVYLTPR-------GQKGSGDWYVDEQQQKIVKMD 407
I IR+NG +VF+P+FGI+G YL + G +GS +W Q+ K+
Sbjct: 875 IADGVIYSIRTNGVLVFIPRFGIKGAAYLKNKDSLVISCGPEGSSEWKPGSLQRSQNKII 934
Query: 408 GNLSYSVLQTVNIHM 422
+ Q+V H+
Sbjct: 935 STTAGG--QSVTFHL 947
Score = 215 (80.7 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 51/133 (38%), Positives = 77/133 (57%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A SV+WEL + EI Y +++I+S L Y AQ +D + + D+ +
Sbjct: 554 VDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNF---SIVDDIPEL 610
Query: 122 NSLAKKMRQRRIE 134
+L K+ +Q ++E
Sbjct: 611 KALDKQSQQAKLE 623
>RGD|1308959 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S. cerevisiae)-like"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO;ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0019899 "enzyme binding" evidence=IEA;ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 RGD:1308959
GO:GO:0005886 GO:GO:0005813 GO:GO:0003723 GO:GO:0016075
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 OrthoDB:EOG4229HZ
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BC085932 IPI:IPI00366657 RefSeq:NP_001008381.1
UniGene:Rn.24884 ProteinModelPortal:Q5U2P0 STRING:Q5U2P0
PRIDE:Q5U2P0 Ensembl:ENSRNOT00000014071 GeneID:363077
KEGG:rno:363077 UCSC:RGD:1308959 InParanoid:Q5U2P0 NextBio:682358
Genevestigator:Q5U2P0 Uniprot:Q5U2P0
Length = 1054
Score = 523 (189.2 bits), Expect = 2.9e-49, P = 2.9e-49
Identities = 134/375 (35%), Positives = 202/375 (53%)
Query: 65 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
R A+ + +E E ++ + S++ +E Q R ++L + L + + +
Sbjct: 583 RSAYKLFYEAAQE--LLDGNF--SIVDDIPEFKTLEEQNRQ--AKL-EELVWAIGKLTDI 635
Query: 125 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 184
A+ +R +R GAL L EV+ Q+D + + D+ Q E ++ V E M+ AN VA+
Sbjct: 636 ARHIRAKRDRCGALELEGVEVRVQLDDKKNIH-DLIPKQPLEVHETVAECMILANHWVAK 694
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 243
+I FP +LLR+HP P +E L A A G +D S+K LADSLD A DP
Sbjct: 695 KIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPSDPLV 754
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 303
NKL+R +AT+ M+ A+YF +G EFHHYGLA YTHFTSPIRRY+D+VVHRLL A+
Sbjct: 755 NKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAA 814
Query: 304 LGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARI 360
+ K + ++ L + ++N R+R AQ + + S EL +YF+ R +TE R
Sbjct: 815 ISKDKKVEIKENLFSNKNLEELCRHINNRNRAAQRSQKQSTELFQCMYFKDRDPETEERC 874
Query: 361 V------KIRSNGFIVFVPKFGIEGPVYLTPR-------GQKGSGDWYVDEQQQKIVKMD 407
V IR+NG +VF+P+FGI+G YL + G +GS +W Q+ K+
Sbjct: 875 VVDGIIYSIRTNGVLVFIPRFGIKGAAYLKNKDGLVISCGPEGSSEWKPGSLQRSQNKII 934
Query: 408 GNLSYSVLQTVNIHM 422
+ Q+V H+
Sbjct: 935 STTAGG--QSVTFHL 947
Score = 213 (80.0 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 51/133 (38%), Positives = 76/133 (57%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A SV+WEL + EI Y +++I+S L Y AQ +D + + D+
Sbjct: 554 VDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNF---SIVDDIPEF 610
Query: 122 NSLAKKMRQRRIE 134
+L ++ RQ ++E
Sbjct: 611 KTLEEQNRQAKLE 623
>UNIPROTKB|F1NKN5 [details] [associations]
symbol:LOC100857630 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AADN02038918 EMBL:AADN02038919
EMBL:AADN02038920 IPI:IPI00571818 Ensembl:ENSGALT00000012364
Uniprot:F1NKN5
Length = 1082
Score = 501 (181.4 bits), Expect = 7.2e-47, P = 7.2e-47
Identities = 124/337 (36%), Positives = 192/337 (56%)
Query: 56 ICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLT 115
+C ++ + R A+ +++E+ A+ + T SV+ L ++ + R + +L + L
Sbjct: 600 VCYNKSII-RSAYKLVYEV---AQGLLDGDT-SVVDDILELKDLDERTR--EKKLSE-LV 651
Query: 116 TDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFM 175
+ + +A+ +R +R GAL L E++ Q+D + + D+ Q E ++ V E M
Sbjct: 652 WAISKLTDIARHIRAKRDSCGALELEGVEIRVQLDDKKNIH-DLIPKQPLEVHETVAECM 710
Query: 176 LAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDR 235
+ AN VA++I FP +LLR+HP P +E L A+A G +D S+KALA+SLD+
Sbjct: 711 ILANHWVAKKISESFPHQALLRQHPPPRQEFFTDLQECASAKGFAIDTRSNKALAESLDK 770
Query: 236 AVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADV 294
A DP NKL+R +AT+ M+ A+YF +G + EFHHYGLA YTHFTSPIRRYAD+
Sbjct: 771 ANDPLDPIVNKLLRSMATQAMSNALYFSTGSCSEEEFHHYGLALDKYTHFTSPIRRYADI 830
Query: 295 VVHRLLSASLG--IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR 352
+VHRLL A+ L L ++N R+R AQ A + S EL +YF+ +
Sbjct: 831 IVHRLLMAAFRKETKDLKDKLFSNKDLEDPRKHINNRNRAAQHAQKQSTELFQCMYFKDK 890
Query: 353 PTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
+T+ R I IR+NG +VFVP++GI+G Y+
Sbjct: 891 SPETDERCIADGVIYSIRTNGVLVFVPRYGIKGAAYM 927
Score = 223 (83.6 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 54/133 (40%), Positives = 79/133 (59%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT FV + D EA R T+ YL +RR DMLP L+ DICSL +
Sbjct: 519 LPNGNLELGVHIADVTYFVAANSYTDIEARARATTYYLADRRYDMLPSVLSADICSLLSG 578
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMDPLTTDLRN 120
V+R A SV+WEL E+ EI+ Y KS+I+S L Y AQ +D D+ ++D D+
Sbjct: 579 VDRYAVSVLWELERESYEILRVCYNKSIIRSAYKLVYEVAQGLLDGDTSVVD----DILE 634
Query: 121 MNSLAKKMRQRRI 133
+ L ++ R++++
Sbjct: 635 LKDLDERTREKKL 647
>UNIPROTKB|F1PK78 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AAEX03016225
Ensembl:ENSCAFT00000027369 Uniprot:F1PK78
Length = 1024
Score = 498 (180.4 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 124/330 (37%), Positives = 185/330 (56%)
Query: 65 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
R A+ + +E E ++ T V++ L ++ ++R ++L + L L + +
Sbjct: 552 RSAYKLFYEAAQE--LLDGNVT--VVEDIPELKNLDTKSRQ--AKL-EELVWALGKLTDI 604
Query: 125 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 184
A+ +R +R GAL L EV+ Q+D E + D+ Q E ++ V E M+ AN VA
Sbjct: 605 ARHIRAKRDRCGALELEGVEVRVQLD-EKKNIHDLIPKQPLEVHETVAECMILANHWVAR 663
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYF 243
+I FP +LLR+HP P +E L A A G +D S+K LADSLD A +DP
Sbjct: 664 KIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPNDPIV 723
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHY-GLAAPLYTHFTSPIRRYADVVVHRLLSA 302
N+L+R +AT+ M+ A+YF +G EFHHY GLA YTHFTSPIRRY+D+VVHRLL A
Sbjct: 724 NRLLRSMATQAMSNALYFSTGSCAEEEFHHYEGLALDKYTHFTSPIRRYSDIVVHRLLMA 783
Query: 303 SLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR 359
++ K + + L + ++N R+R AQ + + S EL +YF+ + + E R
Sbjct: 784 AISKDKKMEIKDNLLSNKDLEELCRHINNRNRAAQHSQKQSTELFQCMYFKDKDPENEER 843
Query: 360 ------IVKIRSNGFIVFVPKFGIEGPVYL 383
I IR+NG +VF+P+FGI+G YL
Sbjct: 844 CISDGVIYSIRTNGVLVFIPRFGIKGAAYL 873
Score = 219 (82.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 53/133 (39%), Positives = 77/133 (57%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L SL + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 463 LANGSLELGVHIADVTHFVPPSSYIDTEARTRATTYYLADRRYDMLPSILSADLCSLLGG 522
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R A SVIWEL + EI + + +++I+S L Y AQ +D + + D+ +
Sbjct: 523 VDRYAVSVIWELDRTSYEIKNVWFGRTIIRSAYKLFYEAAQELLDGNVTV---VEDIPEL 579
Query: 122 NSLAKKMRQRRIE 134
+L K RQ ++E
Sbjct: 580 KNLDTKSRQAKLE 592
Score = 37 (18.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 164 IREANQMVEEFMLAANVSV 182
++E + VEE LA V V
Sbjct: 967 VKEVTRSVEEAQLAQEVKV 985
>TIGR_CMR|CHY_0289 [details] [associations]
symbol:CHY_0289 "ribonuclease R" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0008997 "ribonuclease R
activity" evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_359161.1 ProteinModelPortal:Q3AFC3 STRING:Q3AFC3
GeneID:3727430 KEGG:chy:CHY_0289 PATRIC:21273751
HOGENOM:HOG000071119 BioCyc:CHYD246194:GJCN-290-MONOMER
Uniprot:Q3AFC3
Length = 724
Score = 455 (165.2 bits), Expect = 1.4e-42, P = 1.4e-42
Identities = 139/417 (33%), Positives = 211/417 (50%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + + IADV+ +V G+ LD EA +RGTSVYL + + MLP L+ ICSL
Sbjct: 270 KLPNGNYQLGVHIADVSYYVREGSALDKEALERGTSVYLAGKVLPMLPPELSNGICSLNP 329
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY-VEAQARMD-DSRLMDPL---TT 116
V+RL SV+ E+TP E++S SVIK+ A L+Y + +A +D D + + L
Sbjct: 330 RVDRLTLSVVMEITPAGEVVSHEIFPSVIKTRARLTYTIVKKAVLDKDPKAREELGDLVP 389
Query: 117 DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFML 176
L M +LA +R+RR+ERGA+ E K +D + + +DI + A+Q++EEFML
Sbjct: 390 MLEEMANLAMILRKRRLERGAIDFDLPEAKVILD-DKGEVVDIVRRERNIAHQLIEEFML 448
Query: 177 AANVSVAEQIL-RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS-----KALA 230
N +VAE+ ++ P L R H P + ++ L G NL +
Sbjct: 449 ITNETVAERFFWQEVPF--LYRIHEDPDEGKIQSLKEFLRLFGYNLKGGRDGKYHPREFQ 506
Query: 231 DSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRR 290
L++ G ++I + R M QA Y + H+GLAA YTHFTSPIRR
Sbjct: 507 RLLEKVAGRKE--ERVINAVMLRSMKQARY------SAERIWHFGLAAEYYTHFTSPIRR 558
Query: 291 YADVVVHRLLSASLGIYKLPSVFQDRPQ-LTSIADNLNYRHRNAQMASRGSVELHTLIYF 349
Y D+++HR++ L P + L +A + + R A A R SVE+ + +
Sbjct: 559 YPDLMIHRIIREVLEGKLTPRREAKLAKILPKVAKHSSEMERRAMEAERESVEMRMVEFM 618
Query: 350 -RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYV-DEQQQKIV 404
K T+ +A I + S GF V +P IEG V ++ D+Y+ DE+ ++
Sbjct: 619 VGKEGTEYDAIISGVTSFGFFVQLPNL-IEGLVRVSTL----EDDYYLYDEKSYALI 670
>FB|FBgn0035111 [details] [associations]
symbol:CG16940 species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
[GO:0008859 "exoribonuclease II activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:AE014296 GO:GO:0003723 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 GO:GO:0008859
EMBL:BT044564 RefSeq:NP_728490.1 UniGene:Dm.29548 SMR:Q8IRJ7
EnsemblMetazoa:FBtr0072486 GeneID:38034 KEGG:dme:Dmel_CG16940
UCSC:CG16940-RC FlyBase:FBgn0035111 InParanoid:Q8IRJ7 OMA:LESGHVI
OrthoDB:EOG46M912 GenomeRNAi:38034 NextBio:806667 Uniprot:Q8IRJ7
Length = 1044
Score = 455 (165.2 bits), Expect = 5.8e-42, P = 5.8e-42
Identities = 127/367 (34%), Positives = 191/367 (52%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLT--------EDICSLRADVER 65
I+DV++F+ LD+ +R TS+YL I MLP+ L +D +
Sbjct: 599 ISDVSHFLIEDNELDNIVKERSTSIYLANEVIHMLPQSLCMRCSLLPGQDKFAFSVFWRM 658
Query: 66 LAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD--SRLMD---PLTT---- 116
V+ + PE + ++VI SC+ +Y AQ +D+ R + P
Sbjct: 659 NGKGVMLQKKPE-------FCRTVINSCSQFAYEHAQKIIDNPNERFTENDFPTILNGFN 711
Query: 117 --DLRN----MNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 170
D+RN ++ +A +R+ R++ GALT+ +A+++F +D T +PL + + REAN++
Sbjct: 712 PDDIRNRVLWLHDIASSIRKTRLDNGALTINNAKLRFLLDPITGEPLSFEVEKQREANRL 771
Query: 171 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 230
+EEFML AN +VA I FP ++LR HP P + L+ L A+G LD SSSKAL
Sbjct: 772 IEEFMLLANQAVARFIHDSFPDIAVLRNHPPPLIKSLKALREKLLALGFELDYSSSKALQ 831
Query: 231 DSLDRAVGDDPY---FNKLIRILATRCMTQAVYFCS-GDLTPPEFHHYGLAAPLYTHFTS 286
+S+ R + P N + L + M +A YFCS G P + HY L+ P+YTHFTS
Sbjct: 832 ESMVRLCNEAPNPVAMNACLSQLLMKPMARATYFCSEGKSEPADLWHYALSIPIYTHFTS 891
Query: 287 PIRRYADVVVHRLLSASLGIYKLPS-VFQDRPQLTSIADNLNYRHRNAQMASRGSVELHT 345
PIRRY D++VHRLL+A+L P D LT +A+ Y NA+ A S L+
Sbjct: 892 PIRRYPDILVHRLLAAALKYCTPPKRTPDDLHTLTKLANERKY---NAKKAGEDSGNLYF 948
Query: 346 LIYFRKR 352
Y +
Sbjct: 949 KRYVHNK 955
>TIGR_CMR|SPO_3330 [details] [associations]
symbol:SPO_3330 "ribonuclease R" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003723 GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967 SMART:SM00316
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 TIGRFAMs:TIGR00358
KO:K12573 TIGRFAMs:TIGR02063 RefSeq:YP_168526.1
ProteinModelPortal:Q5LN82 GeneID:3193934 KEGG:sil:SPO3330
PATRIC:23380111 HOGENOM:HOG000071121 OMA:NLRRYAH
ProtClustDB:CLSK934129 Uniprot:Q5LN82
Length = 752
Score = 449 (163.1 bits), Expect = 8.3e-42, P = 8.3e-42
Identities = 134/422 (31%), Positives = 204/422 (48%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV +V G+ LD EA KRG S Y +R + MLP L+ D+CSL V R +V +
Sbjct: 292 IADVAAYVRAGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQ 351
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSR--LMDPLTTD-LRNMNSLAKKMRQ 130
+ + I R+ + +++S A+L+Y E Q +D S PL + L + + K +
Sbjct: 352 IDAQGNKIGHRFVRGMMRSVASLNYQEVQDAIDGSPNDKTGPLLDEVLTPLYAAYKALDA 411
Query: 131 RRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQIL-RQ 189
R R L L E + ++ + H + +A++++EEFM+ ANV+ AE ++ ++
Sbjct: 412 ERDRRQPLDLDLPERRIVLNDKGHVE-SVAFRDRLDAHKLIEEFMILANVAAAETLIAKR 470
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL---DVSSSKALADSLDRAVGDDPYFNKL 246
PL L R H P E LE L TA A GL L V ++ L L +A G D +L
Sbjct: 471 VPL--LFRVHEEPAPEKLEALRETAQASGLTLAKGQVLQTRHLNALLHQAAGTDEA--EL 526
Query: 247 IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
I I R M QA Y P F H+GLA Y HFTSPIRRY+D++VHR L + G
Sbjct: 527 INISTLRSMAQAYY------NPENFGHFGLALKNYAHFTSPIRRYSDLIVHRGLIKAHGW 580
Query: 307 YKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEARIVKIRS 365
+ QL IA +++ R + MA R + + + Y +R + RI I
Sbjct: 581 GDDGLTADEIEQLDRIATHISDTERRSMMAERDTTDRYLAAYLSERVGNEFSGRISGIAR 640
Query: 366 NGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 425
G V + + G +G L P G ++ D + ++ + L ++ Q V + +
Sbjct: 641 FGAFVKLDETGADG---LVPVRSLGREFFHFDREAGTLMGSETGLLIAIGQRVTVRLAQA 697
Query: 426 EP 427
P
Sbjct: 698 SP 699
>TIGR_CMR|GSU_1485 [details] [associations]
symbol:GSU_1485 "ribonuclease R, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0008997 "ribonuclease R
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573
OMA:FGFLIPD TIGRFAMs:TIGR02063 HOGENOM:HOG000071119
RefSeq:NP_952536.1 ProteinModelPortal:Q74D34 GeneID:2686169
KEGG:gsu:GSU1485 PATRIC:22025817 ProtClustDB:CLSK828384
BioCyc:GSUL243231:GH27-1468-MONOMER Uniprot:Q74D34
Length = 763
Score = 442 (160.7 bits), Expect = 5.2e-41, P = 5.2e-41
Identities = 140/407 (34%), Positives = 206/407 (50%)
Query: 12 LDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVI 71
+ IADV+++V PG+ LD EA RGTSVY +R I MLP+ L+ ICSL VERL +
Sbjct: 280 VSIADVSHYVKPGSALDREAYLRGTSVYFPDRCIPMLPEELSNGICSLNPQVERLTLTAE 339
Query: 72 WELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDS-----RLMDPLTTDLRNMNSLAK 126
T I S+ + SVI+S A L+Y + + D + L DL M LA
Sbjct: 340 MLFTRSGAIKSSSFYPSVIRSAARLTYTTVRKVLVDGDPEAIKANRHLVDDLEVMKELAL 399
Query: 127 KMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQI 186
++ ++R +RG++ E + +D + + +DI + A++++EEFMLAAN +VA I
Sbjct: 400 RLMEKRKKRGSIDFDLPEPQIVLDLQG-EMVDIIRSERNLAHRIIEEFMLAANEAVASHI 458
Query: 187 L-RQFPLCSLLRRH--PSPTK--EMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDP 241
R P SL R H P PTK + E + A ++ D L +D A G
Sbjct: 459 EERGIP--SLYRVHEPPDPTKLTDFREFIFNFGYAFRMDGDRVDPHELQRLIDEAEGKPE 516
Query: 242 YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLS 301
++I + RCM QA Y + H+GLAA YTHFTSPIRRY D+VVHR+L
Sbjct: 517 --ERMINEVLLRCMKQARY------SHENLGHFGLAARCYTHFTSPIRRYPDLVVHRILK 568
Query: 302 ASLGIYKLPSVFQDR--PQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT-EA 358
L + Q+R L A+ + R R A A R V L + ++R +T E
Sbjct: 569 DILA-GAMTEKEQERLAAALPETAEQTSRRERLAMEAEREIVALKKAQFMKERVGETFEG 627
Query: 359 RIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIV 404
I + S GF V + +EG V+++ + D+Y +E++ +V
Sbjct: 628 YITGVSSFGFFVELIDLFVEGMVHVSTL----ANDFYRYEEKRHSLV 670
>TAIR|locus:2203231 [details] [associations]
symbol:AT1G77680 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004540
"ribonuclease activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 OMA:HIYEYRE
EMBL:AK229034 IPI:IPI00531584 RefSeq:NP_177891.1 UniGene:At.22476
ProteinModelPortal:Q0WPN0 STRING:Q0WPN0 PaxDb:Q0WPN0 PRIDE:Q0WPN0
EnsemblPlants:AT1G77680.1 GeneID:844104 KEGG:ath:AT1G77680
TAIR:At1g77680 HOGENOM:HOG000030596 InParanoid:Q0WPN0
PhylomeDB:Q0WPN0 ProtClustDB:CLSN2682125 Genevestigator:Q0WPN0
Uniprot:Q0WPN0
Length = 1055
Score = 412 (150.1 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 103/270 (38%), Positives = 154/270 (57%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV P T LD EA R TSVYL++R+I MLP L+E++ SL +RLAFS++W+
Sbjct: 515 IADVSYFVLPETALDTEARFRSTSVYLMQRKISMLPPLLSENVGSLSPGADRLAFSILWD 574
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD-SRLMD---P----------LTTDLR 119
L E ++I +++I+SC LSY AQ +D S + + P +T ++
Sbjct: 575 LNREGDVIDRWIGRTIIRSCCKLSYDHAQDIIDGKSDVAENGWPALHGSFKWCDVTRSVK 634
Query: 120 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 179
++ ++ +RQ+R GAL L +++ F D E P D + +N +VEEFML AN
Sbjct: 635 QLSEISTTLRQKRFRNGALQLENSKPVFLFD-EHGVPYDFVTCSRKGSNFLVEEFMLLAN 693
Query: 180 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG- 238
++ AE I + + SLLRRHP P L+ + G++LD+SSS L DSL++ G
Sbjct: 694 MTAAEVISQAYRASSLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSLEKITGN 753
Query: 239 --DDPYFNKLIRILATRCMTQAVYFCSGDL 266
DD F ++ A + M A YFC+G+L
Sbjct: 754 LKDDSVFVDILNNYAIKPMQLASYFCTGNL 783
Score = 363 (132.8 bits), Expect = 9.5e-36, Sum P(2) = 9.5e-36
Identities = 83/203 (40%), Positives = 121/203 (59%)
Query: 114 LTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEE 173
+T ++ ++ ++ +RQ+R GAL L +++ F D E P D + +N +VEE
Sbjct: 629 VTRSVKQLSEISTTLRQKRFRNGALQLENSKPVFLFD-EHGVPYDFVTCSRKGSNFLVEE 687
Query: 174 FMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSL 233
FML AN++ AE I + + SLLRRHP P L+ + G++LD+SSS L DSL
Sbjct: 688 FMLLANMTAAEVISQAYRASSLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSL 747
Query: 234 DRAVG---DDPYFNKLIRILATRCMTQAVYFCSGDL--TPPEFHHYGLAAPLYTHFTSPI 288
++ G DD F ++ A + M A YFC+G+L + E+ HY LA PLYTHFTSP+
Sbjct: 748 EKITGNLKDDSVFVDILNNYAIKPMQLASYFCTGNLKDSVAEWGHYALAVPLYTHFTSPL 807
Query: 289 RRYADVVVHRLLSASLGIYKLPS 311
RRY D+VVHR L+A+L +L S
Sbjct: 808 RRYPDIVVHRALAAALEAEELYS 830
Score = 62 (26.9 bits), Expect = 5.3e-41, Sum P(2) = 5.3e-41
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 319 LTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPT-DTEARIVKIRSNGFIVFVPKFGI 377
L+ +A N R A+ +L+T +++ EAR++ + S V++ K GI
Sbjct: 878 LSDVAAYCNERKLAARKVRDACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGI 937
Query: 378 EGPVY 382
E +Y
Sbjct: 938 ERRIY 942
>TIGR_CMR|BA_5334 [details] [associations]
symbol:BA_5334 "ribonuclease R" species:198094 "Bacillus
anthracis str. Ames" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0016070 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
HOGENOM:HOG000071119 RefSeq:NP_847510.1 RefSeq:YP_021992.2
RefSeq:YP_031196.1 ProteinModelPortal:Q81XA6 IntAct:Q81XA6
DNASU:1084838 EnsemblBacteria:EBBACT00000009754
EnsemblBacteria:EBBACT00000016672 EnsemblBacteria:EBBACT00000021451
GeneID:1084838 GeneID:2818515 GeneID:2848989 KEGG:ban:BA_5334
KEGG:bar:GBAA_5334 KEGG:bat:BAS4956 ProtClustDB:CLSK873641
BioCyc:BANT260799:GJAJ-5031-MONOMER
BioCyc:BANT261594:GJ7F-5204-MONOMER Uniprot:Q81XA6
Length = 808
Score = 440 (159.9 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 133/423 (31%), Positives = 212/423 (50%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL+ + + IADV+++V G+P+D EA++R TSVYLV+R I M+P L+ ICSL
Sbjct: 279 KLENGNYKLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSLNP 338
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDS--RLM---DPLTT 116
V+RL S E+ +++ +SVIK+ ++Y + ++ ++D LM +PL
Sbjct: 339 KVDRLTLSCEMEINNLGDVVKHEIFQSVIKTTERMTYADVRSILEDEDEELMKRYEPLVP 398
Query: 117 DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFML 176
+ M LA+ +R++R+ RGA+ E K +D E P D+ M + +++EEFML
Sbjct: 399 MFKEMGQLAQILREKRMRRGAIDFDFKEAKVLVDEEGK-PTDVVMRDRSVSEKLIEEFML 457
Query: 177 AANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS----KALADS 232
AN +VAE + + R H P ++ LE G + ++ +AL
Sbjct: 458 VANETVAEHF-HWMNVPFMYRVHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQI 516
Query: 233 LDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYA 292
L+ G +I + R M QA Y D H+GL+ YTHFTSPIRRY
Sbjct: 517 LEMVQGQPE--EVVISTVMLRSMKQARY--DAD----SLGHFGLSTEFYTHFTSPIRRYP 568
Query: 293 DVVVHRLLSASLGIYKLPSVFQD--RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR 350
D +VHRL+ + K+ + Q R +L IA++ + R A A R + EL Y
Sbjct: 569 DTIVHRLIREYIINGKVDNETQAKWREKLPEIAEHSSNMERRAVEAERETDELKKAEYML 628
Query: 351 -KRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIV-KMD 407
K + + I + + G V +P IEG V+++ + D+Y DEQ ++ +
Sbjct: 629 DKIGEEYDGMISSVTNFGLFVELPNT-IEGLVHVSYL----TDDYYRYDEQHFAMIGERT 683
Query: 408 GNL 410
GN+
Sbjct: 684 GNV 686
>ASPGD|ASPL0000054659 [details] [associations]
symbol:AN1158 species:162425 "Emericella nidulans"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0032153 "cell division site"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0060237 "regulation of fungal-type cell wall
organization" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0034613 "cellular protein
localization" evidence=IEA] [GO:2000115 "regulation of maintenance
of bipolar cell polarity regulating cell shape" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:AACD01000016
EMBL:BN001308 GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557
OrthoDB:EOG4MGWGN HOGENOM:HOG000207194 OMA:DIFICGS
RefSeq:XP_658762.1 ProteinModelPortal:Q5BE72 STRING:Q5BE72
EnsemblFungi:CADANIAT00001468 GeneID:2876936 KEGG:ani:AN1158.2
Uniprot:Q5BE72
Length = 1374
Score = 427 (155.4 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 114/382 (29%), Positives = 185/382 (48%)
Query: 12 LDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVI 71
+ + D+ +FV P + +D EA KRGT+VYLV+R + MLP + ++C+L ERL SV+
Sbjct: 793 IHVTDIAHFVKPNSLVDREAKKRGTAVYLVDRLVKMLPPRIATELCALLPGEERLTVSVV 852
Query: 72 WELTPEAEIISTRYT--KSVIKSCAALSY--VEAQARMDDSRLMDPLTTDL-RNMNSLAK 126
++ PE I KS+IKS L + VE+ + + ++ D+ R + A
Sbjct: 853 FKANPETGAIDDDIWIGKSIIKSSGKLGFDEVESVIKGTSDVPLSGVSVDIIRGLQRTAS 912
Query: 127 KMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQI 186
K R+ R+ + + +D E + P++ ++ ++VEE AN VA ++
Sbjct: 913 KFREARLGNRVSQIPPLRLLHSLDDE-NVPVESNIFGSSAVRELVEELSCKANFLVARKL 971
Query: 187 LRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKL 246
+ P + LRR SP L + +G D SSS +L SL + DD K
Sbjct: 972 VAALPDKAFLRRQQSPNPRRLHSFVDRMNRLGFGFDESSSGSLQSSLCKVKDDD--LRKG 1029
Query: 247 IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
+ + + M +A Y+ +G + HY L P+YTHFT+P+RRYADV+VHR L A L
Sbjct: 1030 METIFVKSMQRAKYYVAGTVQDEMRPHYTLNLPVYTHFTNPLRRYADVIVHRQLEAVLSD 1089
Query: 307 YKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTD------TEARI 360
+ D L+ AD N + +A A SV + K + +E +
Sbjct: 1090 GAI-EFSDDVESLSKTADICNNKKDSAHNAQEQSVHIEACRNMDKLRQEIGGDLISEGIV 1148
Query: 361 VKIRSNGFIVFVPKFGIEGPVY 382
+ + + F V +P++G E V+
Sbjct: 1149 LCVYESAFDVLIPEYGFEKRVH 1170
>UNIPROTKB|I3LLL5 [details] [associations]
symbol:I3LLL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 GO:GO:0003723 GO:GO:0004540 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 EMBL:CU861482
Ensembl:ENSSSCT00000031517 Uniprot:I3LLL5
Length = 385
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 96/223 (43%), Positives = 133/223 (59%)
Query: 169 QMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKA 228
++VEEFML AN++VA +I R FP +LLRRHP P +ML L+ +GL +D SS+ A
Sbjct: 82 RLVEEFMLLANMAVAREIHRAFPERALLRRHPPPQTKMLNDLMEFCEQLGLPMDFSSAGA 141
Query: 229 LADSLDRAVGDDPYFNKLIRILATRC---MTQAVYFCSGDLTPP-EFHHYGLAAPLYTHF 284
L SL GDD Y +L C M A+YFC+G L P +F HY L PLYTHF
Sbjct: 142 LNKSLTETFGDDKYSLARKEVLTNMCSRPMQMALYFCAGTLRDPAQFRHYALNVPLYTHF 201
Query: 285 TSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELH 344
TSPIRR+ADV+VHRLL+A+LG Y+ P + L AD+ N R +MAS+ EL
Sbjct: 202 TSPIRRFADVMVHRLLAAALG-YREPPDMEPNV-LQKRADHCNDR----RMASKRVQELS 255
Query: 345 TLIYF-----RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
T ++F P ++EA ++ + + F V V ++G++ +Y
Sbjct: 256 TGLFFAILVKESGPLESEAMVLGVLNQAFDVLVLRYGVQKRIY 298
>CGD|CAL0003016 [details] [associations]
symbol:SSD1 species:5476 "Candida albicans" [GO:0020012
"evasion or tolerance of host immune response" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005935 "cellular bud neck"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0032153 "cell division site" evidence=IEA]
[GO:0060237 "regulation of fungal-type cell wall organization"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IEA] [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0003016
GO:GO:0009405 GO:GO:0003723 GO:GO:0004540 EMBL:AACQ01000012
GO:GO:0020012 RefSeq:XP_721868.1 ProteinModelPortal:Q5AK62
STRING:Q5AK62 GeneID:3636520 KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 418 (152.2 bits), Expect = 7.9e-38, P = 7.9e-38
Identities = 109/381 (28%), Positives = 205/381 (53%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
+AD+ F+ PG+ LD ++ KR +SV+L ++ +++ PK + + I S + + + LA SV++E
Sbjct: 709 VADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVNLFPKQVNK-IVSFKENEKNLAVSVVFE 767
Query: 74 L-TPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPL---TTD-LRNMNSLAKKM 128
+ T E+ +SVI ++Y +A + + +D + T+D ++ + +AK+
Sbjct: 768 IDTSNFEVEDLYIHESVIVPKQLVTY-DAFDTILSGQSVDSISSATSDYVKTFSLIAKEF 826
Query: 129 RQRRIERGALTLA-SAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQIL 187
R+ R+ +L + + + Q+D E LD+ +++ A ++ E N ++A ++
Sbjct: 827 RRHRLSNRSLGITPNLTLLDQLDDEKVR-LDLNIFKDSLAFDVISEISHKVNSAIAAKVH 885
Query: 188 RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLI 247
++LRRHP PT + +E +R A ++G +D ++S L +S+ + DDP K +
Sbjct: 886 AGLGDQAILRRHPLPTLQKMETFVRKATSLGFKIDTTTSSTLQNSILKI--DDPVKRKCV 943
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIY 307
L +CM++ Y+ +G + HY PLYTHFT+P+RRYAD++VHR L A L
Sbjct: 944 ETLLYKCMSRGRYYVAGKQDTDSYAHYYFNLPLYTHFTAPLRRYADLIVHRQLKAVLN-K 1002
Query: 308 KLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR------IV 361
++ +D L +I D N++ A A ++ L L ++T + +V
Sbjct: 1003 QVED--KDLDSLKAITDYCNFKKDCAANAQEQAIHL-LLSQTINEMSETAGQLLCMGTVV 1059
Query: 362 KIRSNGFIVFVPKFGIEGPVY 382
++ + F VF+P+FG+E V+
Sbjct: 1060 QVYESSFDVFIPEFGVEKRVH 1080
>UNIPROTKB|Q5AK62 [details] [associations]
symbol:SSD1 "Putative uncharacterized protein SSD1"
species:237561 "Candida albicans SC5314" [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0020012 "evasion or tolerance of host immune
response" evidence=IMP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 CGD:CAL0003016 GO:GO:0009405 GO:GO:0003723
GO:GO:0004540 EMBL:AACQ01000012 GO:GO:0020012 RefSeq:XP_721868.1
ProteinModelPortal:Q5AK62 STRING:Q5AK62 GeneID:3636520
KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 418 (152.2 bits), Expect = 7.9e-38, P = 7.9e-38
Identities = 109/381 (28%), Positives = 205/381 (53%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
+AD+ F+ PG+ LD ++ KR +SV+L ++ +++ PK + + I S + + + LA SV++E
Sbjct: 709 VADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVNLFPKQVNK-IVSFKENEKNLAVSVVFE 767
Query: 74 L-TPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPL---TTD-LRNMNSLAKKM 128
+ T E+ +SVI ++Y +A + + +D + T+D ++ + +AK+
Sbjct: 768 IDTSNFEVEDLYIHESVIVPKQLVTY-DAFDTILSGQSVDSISSATSDYVKTFSLIAKEF 826
Query: 129 RQRRIERGALTLA-SAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQIL 187
R+ R+ +L + + + Q+D E LD+ +++ A ++ E N ++A ++
Sbjct: 827 RRHRLSNRSLGITPNLTLLDQLDDEKVR-LDLNIFKDSLAFDVISEISHKVNSAIAAKVH 885
Query: 188 RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLI 247
++LRRHP PT + +E +R A ++G +D ++S L +S+ + DDP K +
Sbjct: 886 AGLGDQAILRRHPLPTLQKMETFVRKATSLGFKIDTTTSSTLQNSILKI--DDPVKRKCV 943
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIY 307
L +CM++ Y+ +G + HY PLYTHFT+P+RRYAD++VHR L A L
Sbjct: 944 ETLLYKCMSRGRYYVAGKQDTDSYAHYYFNLPLYTHFTAPLRRYADLIVHRQLKAVLN-K 1002
Query: 308 KLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR------IV 361
++ +D L +I D N++ A A ++ L L ++T + +V
Sbjct: 1003 QVED--KDLDSLKAITDYCNFKKDCAANAQEQAIHL-LLSQTINEMSETAGQLLCMGTVV 1059
Query: 362 KIRSNGFIVFVPKFGIEGPVY 382
++ + F VF+P+FG+E V+
Sbjct: 1060 QVYESSFDVFIPEFGVEKRVH 1080
>TIGR_CMR|CBU_1091 [details] [associations]
symbol:CBU_1091 "ribonuclease R" species:227377 "Coxiella
burnetii RSA 493" [GO:0008997 "ribonuclease R activity"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD
TIGRFAMs:TIGR02063 RefSeq:NP_820090.2 ProteinModelPortal:Q83CM3
PRIDE:Q83CM3 GeneID:1208992 KEGG:cbu:CBU_1091 PATRIC:17930913
ProtClustDB:CLSK914532 BioCyc:CBUR227377:GJ7S-1084-MONOMER
Uniprot:Q83CM3
Length = 749
Score = 406 (148.0 bits), Expect = 4.2e-37, P = 4.2e-37
Identities = 115/376 (30%), Positives = 193/376 (51%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+++V + LD E RG SVY + I MLP+ L+ ++CSL + +RLA
Sbjct: 315 IADVSHYVSRESALDKEGQLRGNSVYFPSKVIPMLPEALSNNLCSLVPNKDRLAIVCEIH 374
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM-DPLTTDLRNMNSLAKKMRQRR 132
LT + ++ ++ ++VI S A L+Y + A + + + + ++N++ L + + ++R
Sbjct: 375 LTAKGKVSKYQFYEAVIHSHARLTYTQVAAMLRGEKTKNEEMLPHIKNLDQLYQNLLRQR 434
Query: 133 IERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPL 192
I RGA+ + E + Q D + + + + EA++++EE ML ANVS A L++ +
Sbjct: 435 INRGAIEFETTETRIQFDQKGKIKRIVPVVR-NEAHRIIEECMLVANVS-ASHFLQEKNI 492
Query: 193 CSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLIRIL 250
+L R H P ++ L L + A GL L D L + P + L++ +
Sbjct: 493 PTLYRVHEGPDEQKLHDLKQFLRAFGLRLTGGDKPTPMDYAKLLLRIEKRPDAH-LLQTV 551
Query: 251 ATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLP 310
R + QA+Y TP + H+GL+ Y HFTSPIRRY D++VHR + +L K P
Sbjct: 552 MLRSLRQAIY------TPEDGGHFGLSYERYCHFTSPIRRYPDLLVHRGIRHALQ-KKSP 604
Query: 311 SVFQ-DRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEA-RIVKIRSNGF 368
F D P+L + ++ + R A A+R +V+ Y + A IV + G
Sbjct: 605 KKFHYDNPKLGELGEHCSMTERRADRATREAVDWLKCEYMMNKIGQAYAGHIVDVTGFGV 664
Query: 369 IVFVPKFGIEGPVYLT 384
V + + IEG V++T
Sbjct: 665 FVQLDQIYIEGLVHIT 680
>TIGR_CMR|CPS_4617 [details] [associations]
symbol:CPS_4617 "ribonuclease R" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008997 "ribonuclease R activity"
evidence=ISS] [GO:0016075 "rRNA catabolic process" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_271264.1 ProteinModelPortal:Q47VA8 STRING:Q47VA8
GeneID:3520956 KEGG:cps:CPS_4617 PATRIC:21472057
BioCyc:CPSY167879:GI48-4626-MONOMER Uniprot:Q47VA8
Length = 826
Score = 388 (141.6 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 119/437 (27%), Positives = 205/437 (46%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V GT LDDEA RG SVY + I MLP+ L+ +CSL DV+RL
Sbjct: 307 IADVSYYVQHGTALDDEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCEMT 366
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMDPLTT---DLRNMNSLAKKMR 129
++ ++ +++ +V++S A +Y + A +D D L T DL+N+ + +
Sbjct: 367 ISATGKLSGSKFYPAVMRSHARFTYTKVAAILDGDEALCQEYQTLVPDLKNLEHMYHALT 426
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
R++RGA+ + E F I E + +A++++EE M+ ANV+ A+ + +
Sbjct: 427 DARLKRGAIAFETQESIF-IFNEDKKIASVEALIRNDAHKIIEECMIMANVATAK-FIEK 484
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL---DVSSSKALADSLDRAVGDDPYFNKL 246
L R H P+++ + +GL+L + + D L + G +L
Sbjct: 485 HEKPGLFRVHDKPSEDKYRNFVTYLNELGLSLPSKEAPEPRDYGDILAKVAGRPD--QEL 542
Query: 247 IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
I+ + R M QAVY + H+GLA P Y+HFTSPIRRY D+VVHR++ A L
Sbjct: 543 IQTMLLRSMRQAVYQSDNE------GHFGLALPSYSHFTSPIRRYPDLVVHRVIKAILEK 596
Query: 307 YKLPSVFQDR-----PQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIV 361
+ + ++ + ++ + R A A+R + + + D ++
Sbjct: 597 EAKNAANEGNYEYSLEEVIELGEHCSMTERRADEATRDVADWLKCEFMQDHVGDNFTGVI 656
Query: 362 KIRSN-GFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSVLQTVN 419
+N G V + IEG V++T G+ D+Y D+ + + + Y V +
Sbjct: 657 STVTNFGMFVRLQDLHIEGLVHITSLGR----DFYHFDDVRMCLSGENSGKKYRVGDEIR 712
Query: 420 IHMEVVEPQPNRPKLQL 436
+ + V + L+L
Sbjct: 713 VQVAAVNLDEKKIDLRL 729
>UNIPROTKB|P21499 [details] [associations]
symbol:rnr species:83333 "Escherichia coli K-12"
[GO:0004540 "ribonuclease activity" evidence=IMP] [GO:0016896
"exoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IDA] [GO:0008997 "ribonuclease R activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0034458 "3'-5' RNA helicase
activity" evidence=IDA] [GO:0034470 "ncRNA processing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0006402 "mRNA catabolic process" evidence=IMP] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA;IEP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009405 "pathogenesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IDA] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 GO:GO:0009405
GO:GO:0006950 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0016556 GO:GO:0003723 EMBL:U14003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0000154 GO:GO:0008859 EMBL:J04199
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 PIR:S56404
RefSeq:NP_418600.4 RefSeq:YP_492321.1 ProteinModelPortal:P21499
SMR:P21499 DIP:DIP-10733N IntAct:P21499 PRIDE:P21499
EnsemblBacteria:EBESCT00000001517 EnsemblBacteria:EBESCT00000016566
GeneID:12932898 GeneID:948692 KEGG:ecj:Y75_p4065 KEGG:eco:b4179
PATRIC:32123931 EchoBASE:EB1239 EcoGene:EG11259
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD ProtClustDB:PRK11642
BioCyc:EcoCyc:EG11259-MONOMER BioCyc:ECOL316407:JW5741-MONOMER
BioCyc:MetaCyc:EG11259-MONOMER Genevestigator:P21499 GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 Uniprot:P21499
Length = 813
Score = 380 (138.8 bits), Expect = 3.5e-34, P = 3.5e-34
Identities = 122/442 (27%), Positives = 204/442 (46%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P TPLD EA RGTSVY + I MLP+ L+ +CSL V+RL
Sbjct: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEA----QARMDDSRLMDPLTTDLRNMNSLAKKMR 129
++ + + ++ ++V+ S A L+Y + Q D PL L +++L K +
Sbjct: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
+ R ERG ++ S E KF + E I Q +A++++EE M+ AN+S A + + +
Sbjct: 419 KAREERGGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEECMILANISAA-RFVEK 476
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLI 247
+L R H P+ E + A +GL L + D L +V D P +++
Sbjct: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDA-EML 535
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR----LLSAS 303
+ + R M QA+Y D P H+GLA Y HFTSPIRRY D+ +HR LL+
Sbjct: 536 QTMLLRSMKQAIY----D--PENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589
Query: 304 LG----IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEAR 359
G + ++ + + + R A A+R + + + +
Sbjct: 590 QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKG 649
Query: 360 IVK-IRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSVLQT 417
++ + GF V + I+G V+++ D+Y D+ Q+++ +Y +
Sbjct: 650 VISSVTGFGFFVRLDDLFIDGLVHVSSL----DNDYYRFDQVGQRLMGESSGQTYRLGDR 705
Query: 418 VNIHMEVVEPQPNRPKLQLTLI 439
V + +E V K+ +LI
Sbjct: 706 VEVRVEAVNMDER--KIDFSLI 725
>WB|WBGene00018612 [details] [associations]
symbol:F48E8.6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:FO081421 GO:GO:0003723 GO:GO:0090305
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:HIYEYRE HOGENOM:HOG000017705
PIR:T16409 RefSeq:NP_498160.2 ProteinModelPortal:Q09568 SMR:Q09568
STRING:Q09568 PaxDb:Q09568 EnsemblMetazoa:F48E8.6 GeneID:175748
KEGG:cel:CELE_F48E8.6 UCSC:F48E8.6 CTD:175748 WormBase:F48E8.6
InParanoid:Q09568 NextBio:889474 Uniprot:Q09568
Length = 848
Score = 373 (136.4 bits), Expect = 2.3e-33, P = 2.3e-33
Identities = 116/399 (29%), Positives = 201/399 (50%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT F+ GT LD AS+RG S YL + I MLP+ L E +CSL V+RL+FS +++
Sbjct: 378 IADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLPRILCEQLCSLNPGVDRLSFSTVFK 437
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSR---LMDPLTTDLRNMNS------- 123
++ EAE+ + +SVI+S L+Y AQ +++ D L D+ + N+
Sbjct: 438 MSYEAELYDVWFGRSVIRSRVKLAYEHAQDFIENPEKDFTCDELP-DISDGNTPFEIKEK 496
Query: 124 ------LAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 177
+A+ +RQ+R + GAL + +KF +D E P + +Y+I+++N++VEEFML
Sbjct: 497 TLMLHRIAQVLRQKREDSGALRIELPRLKFALD-EDKKPQGVSIYEIKDSNKLVEEFMLL 555
Query: 178 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAV 237
AN+ VA++I FP +LLR HP P ++M++ + A +G LD +S L+ SL +
Sbjct: 556 ANMEVAKKIAENFPEHALLRNHPPPKEKMIKDVAEQCARIGFPLDGRTSGLLSTSLRKYQ 615
Query: 238 GDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHY--GLAAPL--YTHFTSPIRRYAD 293
G R+ C+ Q + S + P + Y PL Y HF + Y
Sbjct: 616 GKS-------RL--DMCIRQVI--SSLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTH 664
Query: 294 VV--VHRLLSASLGIYKLPSV-FQDRPQ-LTSIADNLNYRHRNAQMASRGSVELHTLIYF 349
+ R + ++ + +R + + + R + ++AS+ + + ++YF
Sbjct: 665 FTSPIRRYPDVIVHRQLAAALGYNERSERVPEEIQEICTRCNDTKLASKEASDESAMLYF 724
Query: 350 -----RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYL 383
+ P +A ++ + F V + ++G+ VY+
Sbjct: 725 GVFIHQTGPMKCQAVVLGVMDLSFDVLIVEYGVVKRVYV 763
>TIGR_CMR|SO_3935 [details] [associations]
symbol:SO_3935 "ribonuclease R" species:211586 "Shewanella
oneidensis MR-1" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD InterPro:IPR013668
Pfam:PF08461 TIGRFAMs:TIGR02063 RefSeq:NP_719466.1
ProteinModelPortal:Q8EAG7 GeneID:1171573 KEGG:son:SO_3935
PATRIC:23527548 ProtClustDB:CLSK907414 Uniprot:Q8EAG7
Length = 808
Score = 357 (130.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 118/429 (27%), Positives = 206/429 (48%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V + LD EA RG SVY + I MLP+ ++ +CSL V+RL
Sbjct: 299 IADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMT 358
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM---DPLTTDLRNMNSLAKKMRQ 130
++ ++ ++ +V+ S A +Y + A ++ + + L L+ + SL + +
Sbjct: 359 ISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEHEALFVHLQCLQSLYLALDE 418
Query: 131 RRIERGALTLASAEVKFQIDTETHDPLDIGMYQIR-EANQMVEEFMLAANVSVAEQILRQ 189
+R ERGA+ + E +F + + +D + + R +A++++EE M+ ANVS A+ +++
Sbjct: 419 QRAERGAIAFETIETQFIFNDQRK--IDKIVPRARNQAHKIIEECMILANVSAAK-FVKK 475
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLI 247
L R H SP+++ L A GL++ AD ++ + D P +LI
Sbjct: 476 HKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDA-ELI 534
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIY 307
+++ R M QA+Y TP H+GLA Y HFTSPIRRY D+V+HR++ L
Sbjct: 535 QVMLLRSMRQAIY------TPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKE 588
Query: 308 KLPSVFQDRP---------QLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT-E 357
K + + P +L + + + R A A+R + + + DT E
Sbjct: 589 KGEANEKWTPDGGYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFE 648
Query: 358 ARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSVLQ 416
A I + + G V + I+G V+++ G D+Y D +Q+++ Y V
Sbjct: 649 AVIASVTNFGLFVRLNDLFIDGLVHISSLGS----DYYQFDPMRQRLIGEHTGQVYQVGD 704
Query: 417 TVNIHMEVV 425
V + + V
Sbjct: 705 PVTVKVAAV 713
>UNIPROTKB|Q9KNY1 [details] [associations]
symbol:rnr "Ribonuclease R" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 338 (124.0 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 116/431 (26%), Positives = 202/431 (46%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P T LD EA RG SVY + + MLP+ L+ +CSL V+RL
Sbjct: 306 IADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD---PLTTDLRNMNSLAKKMR 129
++ ++ ++ ++V+ S A L+Y + ++ D L + L L ++ + + ++
Sbjct: 366 VSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLK 425
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
R ERGA+ + E KF + + I +A++++EE M+ AN++ A ++ +
Sbjct: 426 SARDERGAIEFETVETKFIFNAQRKIE-SIEPVVRNDAHKLIEECMILANIASAS-LVEK 483
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLI 247
+L R H P +E L +GL+L + D +L + +G+ P +LI
Sbjct: 484 AKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPD-KELI 542
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIY 307
+ + R M QAVY + D H+GLA Y HFTSPIRRY D+++HR + +
Sbjct: 543 QTMLLRSMKQAVY--NAD----NAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIA-- 594
Query: 308 KLPSVFQDRPQLTS----IADNLNYRHRNAQMASR----GSVELHTLI---YFRKRP-TD 355
K QDR T D++++ M R + E+ + Y + +
Sbjct: 595 KQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEE 654
Query: 356 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSV 414
E + + S GF V + + I+G V+++ + D+Y D Q++V Y +
Sbjct: 655 LEGVVANVTSFGFFVRLTELHIDGLVHISTL----ANDYYHYDPIGQRLVGESFGAIYRL 710
Query: 415 LQTVNIHMEVV 425
V + + V
Sbjct: 711 GDAVKVKVLAV 721
>TIGR_CMR|VC_2599 [details] [associations]
symbol:VC_2599 "ribonuclease R" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 338 (124.0 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 116/431 (26%), Positives = 202/431 (46%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P T LD EA RG SVY + + MLP+ L+ +CSL V+RL
Sbjct: 306 IADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD---PLTTDLRNMNSLAKKMR 129
++ ++ ++ ++V+ S A L+Y + ++ D L + L L ++ + + ++
Sbjct: 366 VSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLK 425
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
R ERGA+ + E KF + + I +A++++EE M+ AN++ A ++ +
Sbjct: 426 SARDERGAIEFETVETKFIFNAQRKIE-SIEPVVRNDAHKLIEECMILANIASAS-LVEK 483
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLI 247
+L R H P +E L +GL+L + D +L + +G+ P +LI
Sbjct: 484 AKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPD-KELI 542
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIY 307
+ + R M QAVY + D H+GLA Y HFTSPIRRY D+++HR + +
Sbjct: 543 QTMLLRSMKQAVY--NAD----NAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIA-- 594
Query: 308 KLPSVFQDRPQLTS----IADNLNYRHRNAQMASR----GSVELHTLI---YFRKRP-TD 355
K QDR T D++++ M R + E+ + Y + +
Sbjct: 595 KQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEE 654
Query: 356 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSV 414
E + + S GF V + + I+G V+++ + D+Y D Q++V Y +
Sbjct: 655 LEGVVANVTSFGFFVRLTELHIDGLVHISTL----ANDYYHYDPIGQRLVGESFGAIYRL 710
Query: 415 LQTVNIHMEVV 425
V + + V
Sbjct: 711 GDAVKVKVLAV 721
>SGD|S000002701 [details] [associations]
symbol:SSD1 "Translational repressor with a role in polar
growth and wall integrity" species:4932 "Saccharomyces cerevisiae"
[GO:0005933 "cellular bud" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0000900 "translation
repressor activity, nucleic acid binding" evidence=IGI] [GO:0060237
"regulation of fungal-type cell wall organization" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IGI]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 SGD:S000002701 GO:GO:0005634 GO:GO:0005935
GO:GO:0051301 GO:GO:0007067 EMBL:BK006938 GO:GO:0048027
GO:GO:0000932 GO:GO:0004540 GO:GO:0008298 GO:GO:0060237
GO:GO:0010494 GO:GO:0000900 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 OrthoDB:EOG4MGWGN EMBL:U51031 EMBL:M60318
EMBL:M63004 PIR:A39578 RefSeq:NP_010579.1 ProteinModelPortal:P24276
DIP:DIP-6449N IntAct:P24276 MINT:MINT-605909 STRING:P24276
PaxDb:P24276 PeptideAtlas:P24276 PRIDE:P24276 EnsemblFungi:YDR293C
GeneID:851887 KEGG:sce:YDR293C CYGD:YDR293c
GeneTree:ENSGT00530000069300 HOGENOM:HOG000207194 OMA:DIFICGS
NextBio:969865 Genevestigator:P24276 GermOnline:YDR293C
Uniprot:P24276
Length = 1250
Score = 336 (123.3 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 104/376 (27%), Positives = 177/376 (47%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
+ DVT+ + G+ +D A KR ++V++ ++ +++LP+ +++ SL E SV++
Sbjct: 730 VVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLLPQSFNDEL-SLAPGKESATLSVVYT 788
Query: 74 LTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 132
L I ST +S I LS + ++ P T+ L + +A+ RR
Sbjct: 789 LDSSTLRIKSTWVGESTISPSNILSLEQLDEKLSTG---SP-TSYLSTVQEIARSFYARR 844
Query: 133 I-ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFP 191
I + A L + + +D E +D+ + ++ E N +VAE+I +
Sbjct: 845 INDPEATLLPTLSLLESLDDEKVK-VDLNILDRTLGFVVINEIKRKVNSTVAEKIYTKLG 903
Query: 192 LCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRILA 251
+LLRR P + + G N D +++ L + + DD I IL
Sbjct: 904 DLALLRRQMQPIATKMASFRKKIQNFGYNFDTNTADELIKGVLKIKDDDVRVG--IEILL 961
Query: 252 TRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS 311
+ M +A YF +G + P ++ HY L P+YTHFT+P+RRYAD VVHR L A I+ P
Sbjct: 962 FKTMPRARYFIAGKVDPDQYGHYALNLPIYTHFTAPMRRYADHVVHRQLKAV--IHDTPY 1019
Query: 312 VFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTL--IYFRKRPTD---TEARIVKIRSN 366
+D L ++ N++ A A ++ L I T T A ++++ +
Sbjct: 1020 T-EDMEALKITSEYCNFKKDCAYQAQEQAIHLLLCKTINDMGNTTGQLLTMATVLQVYES 1078
Query: 367 GFIVFVPKFGIEGPVY 382
F VF+P+FGIE V+
Sbjct: 1079 SFDVFIPEFGIEKRVH 1094
>UNIPROTKB|Q5HVE0 [details] [associations]
symbol:CJE0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 274 (101.5 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 83/291 (28%), Positives = 142/291 (48%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V+ + +D EA RG S+Y I MLP PL+E+ICSL+ ++RLA+
Sbjct: 251 IADVSEYVYAYSAIDKEARNRGFSIYFPHIAIPMLPHPLSENICSLKPHLDRLAYCFKIT 310
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
L E ++I + +I S +Y E + + L+ L + + K +R+ R+
Sbjct: 311 LDHENKVIKEELFEGIINSKRRFNYDEVDEILVQKPDLKELSW-LYELFEITKNLRKMRL 369
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
+ A + E++ +D E + ++ ++E+ ML AN + A+ I
Sbjct: 370 -KNAFEFRTEELRMNLD-ENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLID-----I 422
Query: 194 SLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSL-D-RAVGDDPYFNKLIRILA 251
+ R H S ++ LL +G+ DV+ L + + D +A+ D+ + L
Sbjct: 423 GVFRNHLSADTRKIDKLLNELRELGI--DVNFKPNLPELIRDIQALADELNLRAEVDKLI 480
Query: 252 TRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSA 302
+ +A Y + H+GL Y+HFTSPIRRY+D+++HRLL A
Sbjct: 481 IKAQKKAEY------SSVNAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKA 525
>TIGR_CMR|CJE_0734 [details] [associations]
symbol:CJE_0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 274 (101.5 bits), Expect = 3.7e-21, P = 3.7e-21
Identities = 83/291 (28%), Positives = 142/291 (48%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V+ + +D EA RG S+Y I MLP PL+E+ICSL+ ++RLA+
Sbjct: 251 IADVSEYVYAYSAIDKEARNRGFSIYFPHIAIPMLPHPLSENICSLKPHLDRLAYCFKIT 310
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
L E ++I + +I S +Y E + + L+ L + + K +R+ R+
Sbjct: 311 LDHENKVIKEELFEGIINSKRRFNYDEVDEILVQKPDLKELSW-LYELFEITKNLRKMRL 369
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
+ A + E++ +D E + ++ ++E+ ML AN + A+ I
Sbjct: 370 -KNAFEFRTEELRMNLD-ENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLID-----I 422
Query: 194 SLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSL-D-RAVGDDPYFNKLIRILA 251
+ R H S ++ LL +G+ DV+ L + + D +A+ D+ + L
Sbjct: 423 GVFRNHLSADTRKIDKLLNELRELGI--DVNFKPNLPELIRDIQALADELNLRAEVDKLI 480
Query: 252 TRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSA 302
+ +A Y + H+GL Y+HFTSPIRRY+D+++HRLL A
Sbjct: 481 IKAQKKAEY------SSVNAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKA 525
>POMBASE|SPCC16C4.09 [details] [associations]
symbol:sts5 "RNB-like protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=ISM] [GO:0032153 "cell division site"
evidence=IDA] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPCC16C4.09
GO:GO:0005829 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0032153 GO:GO:0003723 GO:GO:0006401 GO:GO:0007049
GO:GO:0004527 GO:GO:0004540 eggNOG:COG0557 PROSITE:PS01175
OrthoDB:EOG4MGWGN EMBL:D58421 PIR:T41099 PIR:T45283
RefSeq:NP_587919.1 ProteinModelPortal:O74454 STRING:O74454
EnsemblFungi:SPCC16C4.09.1 GeneID:2539180 KEGG:spo:SPCC16C4.09
OMA:HESNINS NextBio:20800351 GO:GO:2000115 Uniprot:O74454
Length = 1066
Score = 248 (92.4 bits), Expect = 8.6e-18, P = 8.6e-18
Identities = 99/382 (25%), Positives = 182/382 (47%)
Query: 12 LDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVI 71
+ + DV+ + PG+PLD E +R +V L ++ + + P L E + SLR D + S++
Sbjct: 645 IHVTDVSRVIEPGSPLDRELQRRSIAVNLCQKSVPLFPTTLGEAL-SLREDKDCYTMSLL 703
Query: 72 WELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMDPLTTDLRNMNSLAKKMRQ 130
+++ +I T +VI+ A + EA + D+RL R ++++ ++R
Sbjct: 704 LDVSSTGKIRGTWIGWAVIRPRKAYTMKEADELLQTDARL--------RLFHTVSSRLRT 755
Query: 131 RRIERGALTLASAEVKFQIDTET--HDPLDIGMYQIREANQMVEEFML-AANVSVAEQIL 187
+ + + D E+ DP + ++ I A +++ E +L AAN +VA +
Sbjct: 756 HHLGTDVPLSRYCRLVRRWDEESCSFDPNETNLF-ISSAVEVLRETLLDAANRAVASHLR 814
Query: 188 RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLI 247
++F + LR P++E L A +G LD+SS+K+L SL + DD N ++
Sbjct: 815 QEFRENAFLRTQRLPSRENCRILQSMAIQMGCVLDLSSTKSLLRSLS-LIEDDTVRN-IL 872
Query: 248 RILATRCMTQAVYFCS---GDLTPPEFHHYGLA--APLYTHFTSPIRRYADVVVHRLLSA 302
++ + +AVY G+L + G+ + THFT+P+ RY D+VVH L
Sbjct: 873 QLYYYKVTPRAVYEMQKYKGNLAS-QMMSLGIEDESDDLTHFTAPLERYGDIVVHYQLQL 931
Query: 303 SLGIYKLPSVFQDRPQLTSIADN-LNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIV 361
L +L S + R ++ S A N + R ++ A S+ + + + + +
Sbjct: 932 LLR-GELAS--EKRLRVWSQAANDASRRLVISKFAQETSIHIKIFSDWAESQVWQDGLVC 988
Query: 362 KIRSNGFIVFVPKFGIEGPVYL 383
+ + F VF P G+E V+L
Sbjct: 989 FVAPSYFDVFFPSLGMEKRVHL 1010
>UNIPROTKB|P30850 [details] [associations]
symbol:rnb "ribonuclease II" species:83333 "Escherichia
coli K-12" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IGI] [GO:0016078
"tRNA catabolic process" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] HAMAP:MF_01036
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011804 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016078 GO:GO:0008408 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 BRENDA:3.1.13.1
GO:GO:0008859 EMBL:X67913 PIR:A64877 RefSeq:NP_415802.1
RefSeq:YP_489554.1 PDB:2ID0 PDB:2IX0 PDB:2IX1 PDBsum:2ID0
PDBsum:2IX0 PDBsum:2IX1 ProteinModelPortal:P30850 SMR:P30850
DIP:DIP-10724N IntAct:P30850 MINT:MINT-1248196 PaxDb:P30850
PRIDE:P30850 EnsemblBacteria:EBESCT00000004108
EnsemblBacteria:EBESCT00000004109 EnsemblBacteria:EBESCT00000015364
GeneID:12934347 GeneID:945864 KEGG:ecj:Y75_p1261 KEGG:eco:b1286
PATRIC:32117840 EchoBASE:EB1577 EcoGene:EG11620 eggNOG:COG4776
HOGENOM:HOG000271427 KO:K01147 OMA:ERDIADW ProtClustDB:PRK05054
BioCyc:EcoCyc:EG11620-MONOMER BioCyc:ECOL316407:JW1279-MONOMER
BioCyc:MetaCyc:EG11620-MONOMER EvolutionaryTrace:P30850
Genevestigator:P30850 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 Uniprot:P30850
Length = 644
Score = 241 (89.9 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 119/423 (28%), Positives = 184/423 (43%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R +
Sbjct: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287
Query: 74 LTPEAEIIST-RYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 132
L+ + I + + I+S A L Y + ++++ P + + L ++ QRR
Sbjct: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347
Query: 133 IE---RGALTLASA-EVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILR 188
E AL + +F + E + LDI R AN++VEE M+AAN+ A ++LR
Sbjct: 348 GEWRHNHALVFKDRPDYRFILG-EKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLR 405
Query: 189 Q---FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP-- 241
F + ++ + L LL+T GL++D L L R + P
Sbjct: 406 DKLGFGIYNVHMGFDPANADALAALLKTH---GLHVDAEEVLTLDGFCKLRRELDAQPTG 462
Query: 242 YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLS 301
+ + IR Q+ S + P H+GL Y +TSPIR+Y D++ HRLL
Sbjct: 463 FLDSRIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINHRLLK 512
Query: 302 ASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE-LHTLIYFRKRPTDTE--A 358
A + K + RPQ I + R R +MA R + L+ K TDT A
Sbjct: 513 A---VIKGETA--TRPQ-DEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA 566
Query: 359 RIVKIRSNGFIVFVPKFGIEGPVYLTPRG-QKGSGDWYVDEQQQKIVKMDGNLSYSVLQT 417
IV I G V + G + P D V Q+ V++ G Y V
Sbjct: 567 EIVDISRGGMRV---RLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDV 623
Query: 418 VNI 420
+++
Sbjct: 624 IDV 626
>POMBASE|SPBC609.01 [details] [associations]
symbol:SPBC609.01 "ribonuclease II (RNB) family"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPBC609.01
GO:GO:0005829 EMBL:CU329671 GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 PROSITE:PS01175 OrthoDB:EOG4MGWGN PIR:T40572
RefSeq:NP_596311.1 ProteinModelPortal:O94525
EnsemblFungi:SPBC609.01.1 GeneID:2540838 KEGG:spo:SPBC609.01
OMA:LHEVATH NextBio:20801955 Uniprot:O94525
Length = 1157
Score = 231 (86.4 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 92/379 (24%), Positives = 166/379 (43%)
Query: 12 LDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVI 71
+ +ADV +V PLDDEA+ R + V L++ + LPK ++E+I SL + L S++
Sbjct: 638 IHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFLPKKVSEEI-SLIEGHDCLTISIV 696
Query: 72 WELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQ 130
+L ++ ++ SVI + +S AQA + + + + + L K
Sbjct: 697 VQLDLKSGAVLQCSLGPSVIHPSSFISLESAQANLQTNEALQLVDASAHVLTKLRLKT-D 755
Query: 131 RRIERGALTLASAEVKFQIDTETHDPLDI-GMYQIREANQMVEEFMLAANVSVAEQILRQ 189
++++ +L QI + + I + I + Q +E ++ N VA ++
Sbjct: 756 KKLDLQSLYCFEF-CDGQIPNIQNINMSIFEAFPIACSLQQIEHWV---NEKVASHLMSV 811
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLIRI 249
FP +LR++ P+ L+ + G+NL SS+ + + + A D L+++
Sbjct: 812 FPSKVILRKNQRPSD--FASLVAVSELTGVNLSASSTPSEIMT-EIATTKDKRTKMLLQL 868
Query: 250 LATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKL 309
R ++ Y G + H+ + P YTHF P RRY D+ V R L +
Sbjct: 869 TLRRMCNESEYTI-GTSNAKDVSHFVFSCPYYTHFCHPTRRYIDICVQRQLREAFD--GR 925
Query: 310 PSVFQDRPQLTSIADNLNYR---HRNAQMASRGSVELHTL--IYFRKRPTDTEARIVKIR 364
P +D L SI + N +RNAQ S + L I R +A ++ +
Sbjct: 926 PDFSKDYRSLLSITQSCNTLSNFYRNAQEKSLHAYLCQLLHSINLRSGLVKHKAFVLAVD 985
Query: 365 SNGFIVFVPKFGIEGPVYL 383
+ + +FG+E + L
Sbjct: 986 QEYIDIVIYEFGLERRISL 1004
>UNIPROTKB|Q9KLE1 [details] [associations]
symbol:rnb "Exoribonuclease 2" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006401 "RNA catabolic
process" evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 212 (79.7 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 93/383 (24%), Positives = 164/383 (42%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T ++ P +D A +RG ++YL R I MLP+ L +++CSL + R A
Sbjct: 232 IADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVT 291
Query: 74 LTPEAEI-ISTRYTKSVIKSCAALSY--VEAQARMDDSRLMDP---LTTDLRNMNSLAKK 127
+ + I R+ + IKS A L Y V S P + +R++ + ++
Sbjct: 292 IRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQA 351
Query: 128 MRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQIL 187
R + + +F++ + +D + I R AN++VEE M+ AN+ + +
Sbjct: 352 RANWRETHAVVFPDRPDYRFELSAD-NDVVAIHADMRRTANRLVEESMITANICAGKTLQ 410
Query: 188 RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLI 247
F + H E + ++ A G + A A++L G F L
Sbjct: 411 TTFGF-GVFNTHAGFKAEKMADVVELMAVNG------APNADAETLATVEG----FAALR 459
Query: 248 RILATR---CMTQAV--YFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSA 302
R LAT+ + + Y ++ H+ + +Y +TSPIR+Y D++ HRLL A
Sbjct: 460 RWLATQETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKA 519
Query: 303 SLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE---LHTLIYFRKRPTDTEAR 359
+ + K P D ++ + L ++ ++A R + TL + T +A
Sbjct: 520 HI-LGKAPVQTPDE----TVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAE 574
Query: 360 I---------VKIRSNGFIVFVP 373
I V++ NG + F+P
Sbjct: 575 IFDINRPGMRVRLLENGAMAFIP 597
>TIGR_CMR|VC_A0805 [details] [associations]
symbol:VC_A0805 "exoribonuclease II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 212 (79.7 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 93/383 (24%), Positives = 164/383 (42%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T ++ P +D A +RG ++YL R I MLP+ L +++CSL + R A
Sbjct: 232 IADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVT 291
Query: 74 LTPEAEI-ISTRYTKSVIKSCAALSY--VEAQARMDDSRLMDP---LTTDLRNMNSLAKK 127
+ + I R+ + IKS A L Y V S P + +R++ + ++
Sbjct: 292 IRKDGVIGDDIRFFAANIKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQA 351
Query: 128 MRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQIL 187
R + + +F++ + +D + I R AN++VEE M+ AN+ + +
Sbjct: 352 RANWRETHAVVFPDRPDYRFELSAD-NDVVAIHADMRRTANRLVEESMITANICAGKTLQ 410
Query: 188 RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKLI 247
F + H E + ++ A G + A A++L G F L
Sbjct: 411 TTFGF-GVFNTHAGFKAEKMADVVELMAVNG------APNADAETLATVEG----FAALR 459
Query: 248 RILATR---CMTQAV--YFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSA 302
R LAT+ + + Y ++ H+ + +Y +TSPIR+Y D++ HRLL A
Sbjct: 460 RWLATQETSYLDNRIRKYQSYSEIGNQPLPHFAMGLDVYATWTSPIRKYGDMINHRLLKA 519
Query: 303 SLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE---LHTLIYFRKRPTDTEAR 359
+ + K P D ++ + L ++ ++A R + TL + T +A
Sbjct: 520 HI-LGKAPVQTPDE----TVGEELALHRKHHKIAERNVADWLYARTLADEPAKETRFQAE 574
Query: 360 I---------VKIRSNGFIVFVP 373
I V++ NG + F+P
Sbjct: 575 IFDINRPGMRVRLLENGAMAFIP 597
>GENEDB_PFALCIPARUM|PFF0745c [details] [associations]
symbol:PFF0745c "ribonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0006396 "RNA processing"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0004540 EMBL:AL844505 InterPro:IPR022966
PROSITE:PS01175 InterPro:IPR013223 Pfam:PF08206 RefSeq:XP_966140.2
EnsemblProtists:PFF0745c:mRNA GeneID:3885866 KEGG:pfa:PFF0745c
EuPathDB:PlasmoDB:PF3D7_0615400 Uniprot:C6KSZ5
Length = 2733
Score = 159 (61.0 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 52/193 (26%), Positives = 91/193 (47%)
Query: 118 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 177
L +M+ + K R R + G++ + ++ F I + + P+ I + +N M+EE ML+
Sbjct: 2366 LYDMHKITKGARNIRRKNGSMFFNNDKINF-ILSNSRSPIGIVRKKYTFSNYMIEELMLS 2424
Query: 178 ANVSVA-EQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRA 236
AN +A Q ++ S+ R H L ++ ++ + + + LD
Sbjct: 2425 ANKLIAIRQYFSKYRDISVFRSHNLNDAIDLNDIMDLLKKSDIHFEFHDLRQIMKFLDEK 2484
Query: 237 VGDDPYF----NKLIRILAT---RCMTQAVYFCSGDLTPPEF--HHYGLAAPLYTHFTSP 287
YF N + I++ + M +A Y + +HY L+ LYTHFTSP
Sbjct: 2485 ---KKYFKQKKNNVYDIVSAYLKKKMIRAEYHTYKYIKDNNMSTYHYALSFLLYTHFTSP 2541
Query: 288 IRRYADVVVHRLL 300
IRRY D++VHR++
Sbjct: 2542 IRRYPDILVHRVI 2554
Score = 108 (43.1 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 28/99 (28%), Positives = 48/99 (48%)
Query: 4 QYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADV 63
+Y+ + I DV+ F+ + LD +A R ++YL M+ K L+E++CSL
Sbjct: 1979 KYNLYEVGVHITDVSFFIKENSSLDIDARNRAMTIYLTHTCFPMISKILSEELCSLDPVN 2038
Query: 64 ERLAFSVIWELTPEAEIISTRY--TKSVIKSCAALSYVE 100
RL S+ + + +I + +S+I S SY E
Sbjct: 2039 NRLCLSIFFYMDSSGKIDHNSFFIKESIINSKVKFSYEE 2077
>DICTYBASE|DDB_G0285435 [details] [associations]
symbol:DDB_G0285435 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0285435 EMBL:AAFI02000079
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_638051.1
ProteinModelPortal:Q54N92 EnsemblProtists:DDB0186491 GeneID:8625097
KEGG:ddi:DDB_G0285435 InParanoid:Q54N92 OMA:RYNDISW Uniprot:Q54N92
Length = 1642
Score = 158 (60.7 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 34/98 (34%), Positives = 60/98 (61%)
Query: 12 LDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVI 71
+ I+DV+ F+ G+ LD EA R ++YL+ I MLPK L+ CSL+ +R FS++
Sbjct: 1027 IHISDVSAFLEKGSKLDKEAEYRLNTIYLIGSIIPMLPKNLSSSTCSLKLYQKRFCFSLL 1086
Query: 72 WELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSR 109
++ + +II ++ KS ++S LSY +AQ ++ ++
Sbjct: 1087 VKIRSDGKIIDYKFCKSNLRSKGHLSYEKAQRIIEKNK 1124
Score = 93 (37.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 220 NLDVSSS---KALADSLDRAVGD-DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYG 275
N+ VSS + + +++A+ + P K +R LA M Y + + F +
Sbjct: 1398 NIVVSSEDDWRTIKTKVEKALKNCTPEQAKAMRRLAMHLMDPTKYITTVEKRQG-FGNEN 1456
Query: 276 LA--APLYTHFTSPIRRYADVVVHRLLSASL 304
L YTHFT+PIRRY DV +HR LS L
Sbjct: 1457 LLDERSQYTHFTAPIRRYMDVNIHRALSLQL 1487
Score = 50 (22.7 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 265 DLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPS-VFQDRPQLT-SI 322
D + EF + + P T +RY D+ R +S L + L + +++ P LT I
Sbjct: 1504 DESSQEFTDFKKSLPTGDDLTQLCQRYNDISWKRKISEKLNLLYLATYIWEKGPILTPGI 1563
Query: 323 ADNLNYRH 330
++ +H
Sbjct: 1564 VVTMSTKH 1571
Score = 49 (22.3 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 124 LAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVA 183
++ + R ER + S +++ + E P+ + E++ +V+EFM AN A
Sbjct: 1214 ISSLLNNYRKERREIFDISNNIQYDLSVEGV-PISVDFLPKLESHVLVQEFMHLANNLAA 1272
Query: 184 EQIL 187
+L
Sbjct: 1273 VSLL 1276
>RGD|1306056 [details] [associations]
symbol:Pric285 "peroxisomal proliferator-activated receptor A
interacting complex 285" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR026855
Pfam:PF00773 SMART:SM00382 SMART:SM00955 RGD:1306056 GO:GO:0005524
GO:GO:0003723 GO:GO:0004386 GO:GO:0004540 PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 IPI:IPI00567928 RefSeq:XP_001057758.2
RefSeq:XP_230961.5 UniGene:Rn.47450 ProteinModelPortal:D4ADC2
Ensembl:ENSRNOT00000017787 GeneID:296474 KEGG:rno:296474
UCSC:RGD:1306056 CTD:296474 OrthoDB:EOG4Q84WM NextBio:641262
ArrayExpress:D4ADC2 Uniprot:D4ADC2
Length = 2944
Score = 137 (53.3 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 62/209 (29%), Positives = 99/209 (47%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFSVIW 72
IADV + V LD EA ++GT Y R + MLP L ++ SL +RLA S+
Sbjct: 1603 IADVASLVPKDGALDVEARQQGTVFYAPSREPVLMLPASLCQEALSLLPGQDRLAISLF- 1661
Query: 73 ELTPE----AEIISTRYTKSVIKSCAALSYVEAQA---RMDDSRLMDPLTTDLRNMNSLA 125
LT E +I S R+ S+++S LSY EA+ R + L P D +A
Sbjct: 1662 -LTMEKGGGGQIRSLRFAPSIVRSDRQLSYEEAEELIKRHPGAGLKLPAHLDSVEACVVA 1720
Query: 126 KKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQ 185
+ R L A+ ++ E D + +G R A+ MV+E+M+ N VAE
Sbjct: 1721 ACYFSWMLRRQRLP---ADCYYEPPDE--DSV-LGF---RTAHIMVQEYMIQFNSRVAEF 1771
Query: 186 IL--RQFPLCSLLRRHPSPTKEMLEPLLR 212
++ + + LR P+P+++ L+ + +
Sbjct: 1772 LVGDKHTQTLTPLRWQPTPSRQQLDSVFK 1800
Score = 119 (46.9 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 273 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRN 332
HY L YT +SPIRRY DVV+ RL+ +LG +K S + +R + + + + ++
Sbjct: 1890 HYSLQVDWYTWASSPIRRYLDVVLQRLILLALG-HK-SSTYSNR-DIDGLCQDFSRQYAC 1946
Query: 333 AQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNG--FIVFVP 373
AQ R + LH I + +P + +V + + F V P
Sbjct: 1947 AQSYQRRACSLHLAIQLKTQPQNKLGFVVDVETGARCFKVLFP 1989
>UNIPROTKB|E2RBM4 [details] [associations]
symbol:PRIC285 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:AAEX03014158 Ensembl:ENSCAFT00000020582 OMA:RCQYAHS
Uniprot:E2RBM4
Length = 2919
Score = 137 (53.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 62/206 (30%), Positives = 93/206 (45%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFSVIW 72
IADV + + +D EA ++G + Y +R + MLP L D+ SL +RLA S+
Sbjct: 1607 IADVASSLPRDGAVDLEARRQGITFYAPDREPVPMLPASLCRDVLSLLPGQDRLAISLF- 1665
Query: 73 ELTPEA---EIISTRYTKSVIKSCAALSYVEAQA---RMDDSRLMDPLTTDLRNMNSLAK 126
LT E +I S + SVI S LSY EA+A R P D + +A
Sbjct: 1666 -LTVEKGSDQIKSLHFAPSVICSDRQLSYEEAEAVIRRHPGGGRELPAQLDSVDACVVAA 1724
Query: 127 KMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQI 186
R + R L Q D+ P + + R A+ M++E+M+ N VAE +
Sbjct: 1725 CHFSRVLRRRRL---------QTDSHYEQPSEDCVLGFRAAHVMIKEYMIQFNSLVAELL 1775
Query: 187 LRQFPLCSL--LRRHPSPTKEMLEPL 210
+ P ++ LR P+P + L L
Sbjct: 1776 VSSEPTRTVTPLRWQPTPGERQLGAL 1801
Score = 114 (45.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 262 CSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTS 321
C G+ E HY L YT TSPIRRY DVV+ R + +LG + + R +
Sbjct: 1884 CQGERQ--EAGHYSLQVDWYTWATSPIRRYLDVVLQRQILLALG--RGGPAYSAR-DIDG 1938
Query: 322 IADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRS 365
+ +Y+H AQ R + LH + +P +V + +
Sbjct: 1939 LCQEFSYQHGRAQSYQRQARSLHLAAQLKVQPRSKLGFVVGVET 1982
>UNIPROTKB|E1C0Z0 [details] [associations]
symbol:HELZ2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001900 InterPro:IPR007087 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 SMART:SM00355
SMART:SM00955 GO:GO:0008270 GO:GO:0003723 GO:GO:0005622
GO:GO:0004386 GO:GO:0004540 OMA:FRAAHIM PANTHER:PTHR10887:SF16
GeneTree:ENSGT00550000074391 EMBL:AADN02019144 IPI:IPI00594758
Ensembl:ENSGALT00000009906 Uniprot:E1C0Z0
Length = 2565
Score = 148 (57.2 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 60/178 (33%), Positives = 85/178 (47%)
Query: 12 LDIADVTNFVHPGTPLDDEASKRGTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFS- 69
+ IADV + V G+ +D EA KRG S Y E+ + MLP ++ DICSL +R S
Sbjct: 1288 IHIADVASIVPKGSAVDVEAKKRGVSYYAPEQEPVHMLPPRVSNDICSLLPQKDRRVISL 1347
Query: 70 -VIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRL--MDPLTTDLRNMNSLAK 126
VI E + ++ +T SVI S LSY EA+ + D D L D + LA
Sbjct: 1348 FVIVEKKTD-KVTDGNFTLSVICSDWQLSYEEAELCIQDHYRGGADALRFDTLE-DCLAV 1405
Query: 127 KMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ-IREANQMVEEFMLAANVSVA 183
R+ R + + + D +D LD G R ++QM+EE M+ N VA
Sbjct: 1406 AYHFSRMHRKS--------RLKEDC-FYDQLDEGSSPGNRRSHQMIEELMIMFNSFVA 1454
Score = 101 (40.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 30/74 (40%), Positives = 38/74 (51%)
Query: 233 LDRAVGDDPYFNKLIRI-LATRCMTQAVYFCSGDLTPP-EFHHYGLAAPLYTHFTSPIRR 290
LD V DD + KL + L R + YFC + T + HY L YT +SPIRR
Sbjct: 1539 LDLVVTDDIH-PKLAPVALEFRKLLGRSYFCRSNSTAQSKVGHYSLKVDSYTWASSPIRR 1597
Query: 291 YADVVVHRLLSASL 304
Y D+VV R L + L
Sbjct: 1598 YMDIVVQRHLHSVL 1611
>UNIPROTKB|Q9BYK8 [details] [associations]
symbol:HELZ2 "Helicase with zinc finger domain 2"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid
metabolic process" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] Reactome:REACT_111217
InterPro:IPR001900 InterPro:IPR003593 InterPro:IPR015880
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS00028 PROSITE:PS50157
SMART:SM00355 SMART:SM00382 SMART:SM00955 GO:GO:0005524
Reactome:REACT_111045 GO:GO:0005654 GO:GO:0044281 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0044255
GO:GO:0006351 GO:GO:0003723 GO:GO:0004386 GO:GO:0004540
GO:GO:0030374 eggNOG:COG0557 InterPro:IPR022966 EMBL:AL121829
EMBL:AF517673 EMBL:AB201715 EMBL:AB051556 EMBL:AK074171
EMBL:AK055611 IPI:IPI00249304 IPI:IPI00249305 IPI:IPI00736631
RefSeq:NP_001032412.2 RefSeq:NP_208384.3 UniGene:Hs.517180
ProteinModelPortal:Q9BYK8 IntAct:Q9BYK8 STRING:Q9BYK8
PhosphoSite:Q9BYK8 DMDM:209572784 PaxDb:Q9BYK8 PRIDE:Q9BYK8
GeneID:85441 KEGG:hsa:85441 UCSC:uc002yfl.1 UCSC:uc002yfm.2
CTD:85441 GeneCards:GC20M062189 HGNC:HGNC:30021 HPA:HPA051267
MIM:611265 neXtProt:NX_Q9BYK8 HOGENOM:HOG000231856
HOVERGEN:HBG080465 InParanoid:Q9BYK8 OMA:FRAAHIM PhylomeDB:Q9BYK8
GenomeRNAi:85441 NextBio:76020 ArrayExpress:Q9BYK8 Bgee:Q9BYK8
Genevestigator:Q9BYK8 GermOnline:ENSG00000130589
PANTHER:PTHR10887:SF16 Uniprot:Q9BYK8
Length = 2649
Score = 137 (53.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 59/204 (28%), Positives = 93/204 (45%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERR-IDMLPKPLTEDICSLRADVERLAFSVIW 72
I DV +FV LD EA ++G + Y R + MLP L +D+ SL +RLA S+
Sbjct: 1372 ITDVASFVPRDGVLDVEARRQGAAFYAPGREPVPMLPASLCQDVLSLLPGRDRLAISLFL 1431
Query: 73 ELTPEA-EIISTRYTKSVIKSCAALSYVEAQA--RMDDSRLMD-PLTTDLRNMNSLAKKM 128
+ + ++ S R+ SV++S LSY EA+ R + P D + +A
Sbjct: 1432 TMEKASGQLKSLRFAPSVVQSDRQLSYEEAEEVIRQHPGAGRELPARLDSVDACVVAACY 1491
Query: 129 RQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILR 188
R + R L + D P + G R A+ MV+E+M+ N VAE ++
Sbjct: 1492 FSRLLRRHRL---------RSDCFYEQPDEDGTLGFRAAHIMVKEYMIQFNRLVAEFLVG 1542
Query: 189 QFPLCSL--LRRHPSPTKEMLEPL 210
++ LR P+P + L+ L
Sbjct: 1543 SECTRTVTPLRWQPAPRSQQLKAL 1566
Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 29/93 (31%), Positives = 44/93 (47%)
Query: 273 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRN 332
HY L YT TSPIRRY DVV+ R + +LG S + R + + + +H
Sbjct: 1660 HYSLQVDWYTWATSPIRRYLDVVLQRQILLALG--HGGSAYSAR-DIDGLCQAFSLQHAL 1716
Query: 333 AQMASRGSVELHTLIYFRKRPTDTEARIVKIRS 365
AQ R + LH + + +P D +V + +
Sbjct: 1717 AQSYQRRARSLHLAVQLKAQPLDKLGFVVDVEA 1749
>UNIPROTKB|I3LNA8 [details] [associations]
symbol:I3LNA8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 GO:GO:0003723 GO:GO:0004540
GeneTree:ENSGT00530000063106 EMBL:CU861482 EMBL:CU467781
Ensembl:ENSSSCT00000026675 OMA:KFHEDEL Uniprot:I3LNA8
Length = 146
Score = 159 (61.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 37/109 (33%), Positives = 64/109 (58%)
Query: 47 MLPKPLTEDICSLRADVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMD 106
MLP+ L E++CSL ++L FSVIW LTP +I+S + ++VI+SC LSY AQ+ ++
Sbjct: 1 MLPRLLCEELCSLNPMTDKLTFSVIWTLTPRGKILSEWFGRTVIRSCTKLSYEHAQSMIE 60
Query: 107 D------SRLMDPLTTD---------LRNMNSLAKKMRQRRIERGALTL 140
+ + P++ + + ++ +AK++R++R GAL L
Sbjct: 61 SPTRKIPEKELPPISPEHSGEEVHRAVLTLHGIAKELRKQRFADGALRL 109
>TAIR|locus:2180172 [details] [associations]
symbol:EMB2730 "EMBRYO DEFECTIVE 2730" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0004540 "ribonuclease activity" evidence=IEA;ISS] [GO:0009793
"embryo development ending in seed dormancy" evidence=NAS]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA;IMP]
[GO:0009658 "chloroplast organization" evidence=RCA;IMP]
[GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0034660 "ncRNA metabolic
process" evidence=RCA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009658
GO:GO:0003723 GO:GO:0006364 GO:GO:0000175 eggNOG:COG0557
EMBL:AL162874 GO:GO:0008859 EMBL:BT010457 EMBL:AK176383
IPI:IPI00548385 PIR:T48246 RefSeq:NP_195845.2 UniGene:At.4904
ProteinModelPortal:Q6NQJ6 SMR:Q6NQJ6 STRING:Q6NQJ6 PaxDb:Q6NQJ6
PRIDE:Q6NQJ6 EnsemblPlants:AT5G02250.1 GeneID:830864
KEGG:ath:AT5G02250 GeneFarm:4119 TAIR:At5g02250
HOGENOM:HOG000029837 InParanoid:Q6NQJ6 OMA:RVEEAHP PhylomeDB:Q6NQJ6
ProtClustDB:CLSN2681022 Genevestigator:Q6NQJ6 Uniprot:Q6NQJ6
Length = 803
Score = 146 (56.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 52/186 (27%), Positives = 89/186 (47%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+LQ + + +AD +V PG+ +D EA +RGTSV+L M P+ L + SLR
Sbjct: 426 RLQDGRIKIWIHVADPARYVTPGSKVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQ 485
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
A SV L + I S+I+ L+Y E+ + + L + +L+ +
Sbjct: 486 GENCNAVSVSVVLRSDGCITEYSVDNSIIRPTYMLTY-ESASELLHLNLEEE--AELKLL 542
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQI-DTETHDPLDIGMYQIREAN---QMVEEFMLA 177
+ A Q R E+GA+ + E + ++ + E +PL I +Y +A+ ++V E M+
Sbjct: 543 SEAAFIRSQWRREQGAVDTTTLETRIKVVNPEDPEPL-INLYVENQADLAMRLVFEMMIL 601
Query: 178 ANVSVA 183
VA
Sbjct: 602 CGEVVA 607
Score = 83 (34.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 34/124 (27%), Positives = 53/124 (42%)
Query: 273 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASL-GIYKLPSVFQDRPQLTSIADNLNYRHR 331
H L P Y FTSPIRRY D+ H + A L G P F +L IA ++N + +
Sbjct: 662 HGVLGIPGYVQFTSPIRRYMDLTAHYQIKAFLRGGDNFP--FS-AGELEGIAASVNMQSK 718
Query: 332 NAQMASRGSVELHTLIYFR-----KRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPR 386
+ S + + + R K+ T R VK R ++ + G + +++
Sbjct: 719 VVRKLSNTGLRYWVIEFLRRQEKGKKYTALVLRFVKDRIASLLLV--EVGFQATAWVSEG 776
Query: 387 GQKG 390
Q G
Sbjct: 777 KQVG 780
>RGD|1304646 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISO]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0071034 "CUT catabolic process"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 RGD:1304646
GO:GO:0003723 GO:GO:0004540 SMART:SM00670 IPI:IPI00392641
PRIDE:D3ZAM5 Ensembl:ENSRNOT00000012182 UCSC:RGD:1304646
Uniprot:D3ZAM5
Length = 565
Score = 175 (66.7 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 32/70 (45%), Positives = 53/70 (75%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSLR+
Sbjct: 493 ELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRS 552
Query: 62 DVERLAFSVI 71
+V+RL ++
Sbjct: 553 NVDRLLLHML 562
>UNIPROTKB|F2Z2C0 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 SMART:SM00670 EMBL:AL391384
HGNC:HGNC:20604 ChiTaRS:DIS3 IPI:IPI00978109
ProteinModelPortal:F2Z2C0 SMR:F2Z2C0 PRIDE:F2Z2C0
Ensembl:ENST00000490646 ArrayExpress:F2Z2C0 Bgee:F2Z2C0
Uniprot:F2Z2C0
Length = 559
Score = 173 (66.0 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 31/64 (48%), Positives = 50/64 (78%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSL+
Sbjct: 494 ELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKC 553
Query: 62 DVER 65
DV+R
Sbjct: 554 DVDR 557
>DICTYBASE|DDB_G0288469 [details] [associations]
symbol:DDB_G0288469 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0288469 GO:GO:0003723
EMBL:AAFI02000111 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_636708.1
ProteinModelPortal:Q54IW8 EnsemblProtists:DDB0219344 GeneID:8626640
KEGG:ddi:DDB_G0288469 InParanoid:Q54IW8 OMA:FEMERES
ProtClustDB:CLSZ2429881 Uniprot:Q54IW8
Length = 960
Score = 114 (45.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 43/176 (24%), Positives = 82/176 (46%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+ V P + D + +S+YL + MLP +T + SL + S ++
Sbjct: 573 IADVTDIVKPHSDHDKWGQFKSSSIYLPHKTYFMLPNSITNHL-SLSPNKSNKCLSFQFK 631
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLA--KKM--- 128
++ + EII + S++ + SY + + + DS + + +++ + KK+
Sbjct: 632 VSNKGEIIDYKIFPSIVNNLIKTSYNKVENSLLDSNSSNNNKNTIHSIDEIKQLKKLFEI 691
Query: 129 ----RQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIRE---ANQMVEEFMLA 177
++RR + +K +D + +D+ Q RE +NQ+V EFM+A
Sbjct: 692 STLLKERREINKPYRIDLPSIKINVDN--NGLIDVCQDQ-RENEISNQLVSEFMIA 744
Score = 91 (37.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 263 SGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASL 304
SG+++ H+ LA YT TSPIRRY D++VH + + L
Sbjct: 798 SGEVSISNIGHHSLALDNYTWATSPIRRYPDIIVHSQIKSFL 839
>UNIPROTKB|F1RMM8 [details] [associations]
symbol:LOC100519780 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045944 "positive regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001900 InterPro:IPR003593
InterPro:IPR026855 Pfam:PF00773 PROSITE:PS50103 SMART:SM00382
SMART:SM00955 GO:GO:0005524 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175
OMA:FRAAHIM PANTHER:PTHR10887:SF16 GeneTree:ENSGT00550000074391
EMBL:FP102633 Ensembl:ENSSSCT00000003670 Uniprot:F1RMM8
Length = 2879
Score = 118 (46.6 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 53/187 (28%), Positives = 87/187 (46%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLV-ERRIDMLPKPLTEDICSLRADVERLAFSVIW 72
IADV + V LD EA +RG+++Y + + MLP L++D SL +RL S+
Sbjct: 1558 IADVASCVPRDGALDLEARRRGSTLYAPGQEPVHMLPAVLSQDAFSLLPGRDRLTISLFL 1617
Query: 73 ELTPEAEIISTRYTKSVIKSCAALSYVEAQ--------ARMDDSRLMDPLTTDLRNMNSL 124
++ S R+ SVI+S +SY EA+ A + +D L +
Sbjct: 1618 TEKGSDQLKSLRFAPSVIRSDRQMSYEEAEQVIRSHPRAGCELPARLDSLDACVAAAYHF 1677
Query: 125 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 184
++ +R+RR+ G E Q D ++ +G REA M++E+M+ N VA
Sbjct: 1678 SRVLRRRRLHDGC----HYE---QPDEDSA----LGF---REARIMIKEYMVQYNSLVAA 1723
Query: 185 QILRQFP 191
++ P
Sbjct: 1724 FLVADGP 1730
Score = 90 (36.7 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 273 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
H+ L A YT TSPIRRY DVV+ R + +LG+
Sbjct: 1846 HFALEAEWYTWATSPIRRYVDVVLQRQILRALGL 1879
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 439 439 0.00089 118 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 80
No. of states in DFA: 610 (65 KB)
Total size of DFA: 245 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.62u 0.10s 33.72t Elapsed: 00:00:02
Total cpu time: 33.64u 0.10s 33.74t Elapsed: 00:00:02
Start: Sat May 11 09:14:24 2013 End: Sat May 11 09:14:26 2013