BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013634
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease
Length = 977
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/386 (48%), Positives = 255/386 (66%), Gaps = 6/386 (1%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + + IADVT+FV PGT LD E + RGTSVYLV++RIDMLP L D+CSL+
Sbjct: 534 KLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKP 593
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R AFSVIWEL A I++ + KSVI+S A SY +AQ R+DD D LT +R +
Sbjct: 594 YVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRAL 653
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
L+ K++Q+R+E GAL LAS EVK +D+ET DP ++ + ++ N +VEEFML AN+S
Sbjct: 654 LKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANIS 713
Query: 182 VAEQILRQFPLCSLLRRH---PSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
VA +I FP ++LRRH PS E+L +L T + ++L+ SSKALADSLDR V
Sbjct: 714 VARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLE--SSKALADSLDRCVD 771
Query: 239 -DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
+DPYFN L+RI++TRCM A YF SG + P+F HYGLA +YTHFTSPIRRY DVV H
Sbjct: 772 PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAH 831
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTE 357
R L+ ++G L +D+ ++ I N+N +HRNAQ A R S+E + R +
Sbjct: 832 RQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTET 891
Query: 358 ARIVKIRSNGFIVFVPKFGIEGPVYL 383
++K+ +NG +V VPKFG+EG + L
Sbjct: 892 GYVIKVFNNGIVVLVPKFGVEGLIRL 917
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 1003
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/386 (48%), Positives = 255/386 (66%), Gaps = 6/386 (1%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + + IADVT+FV PGT LD E + RGTSVYLV++RIDMLP L D+CSL+
Sbjct: 560 KLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKP 619
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R AFSVIWEL A I++ + KSVI+S A SY +AQ R+DD D LT +R +
Sbjct: 620 YVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRAL 679
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
L+ K++Q+R+E GAL LAS EVK +D+ET DP ++ + ++ N +VEEFML AN+S
Sbjct: 680 LKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANIS 739
Query: 182 VAEQILRQFPLCSLLRRH---PSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
VA +I FP ++LRRH PS E+L +L T + ++L+ SSKALADSLDR V
Sbjct: 740 VARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLE--SSKALADSLDRCVD 797
Query: 239 -DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
+DPYFN L+RI++TRCM A YF SG + P+F HYGLA +YTHFTSPIRRY DVV H
Sbjct: 798 PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAH 857
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTE 357
R L+ ++G L +D+ ++ I N+N +HRNAQ A R S+E + R +
Sbjct: 858 RQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTET 917
Query: 358 ARIVKIRSNGFIVFVPKFGIEGPVYL 383
++K+ +NG +V VPKFG+EG + L
Sbjct: 918 GYVIKVFNNGIVVLVPKFGVEGLIRL 943
>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44
Length = 760
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/386 (48%), Positives = 245/386 (63%), Gaps = 6/386 (1%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + + IADVT+FV PGT LD E + RGTSVYLV++RID LP L D+CSL+
Sbjct: 317 KLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDXLPXLLGTDLCSLKP 376
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R AFSVIWEL A I++ + KSVI+S A SY +AQ R+DD D LT R +
Sbjct: 377 YVDRFAFSVIWELDDSANIVNVNFXKSVIRSREAFSYEQAQLRIDDKTQNDELTXGXRAL 436
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
L+ K++Q+R+E GAL LAS EVK D+ET DP ++ + ++ N +VEEF L AN+S
Sbjct: 437 LKLSVKLKQKRLEAGALNLASPEVKVHXDSETSDPNEVEIKKLLATNSLVEEFXLLANIS 496
Query: 182 VAEQILRQFPLCSLLRRH---PSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
VA +I FP + LRRH PS E+L L T ++L+ SSKALADSLDR V
Sbjct: 497 VARKIYDAFPQTAXLRRHAAPPSTNFEILNEXLNTRKNXSISLE--SSKALADSLDRCVD 554
Query: 239 -DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
+DPYFN L+RI +TRC A YF SG + P+F HYGLA +YTHFTSPIRRY DVV H
Sbjct: 555 PEDPYFNTLVRIXSTRCXXAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAH 614
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTE 357
R L+ ++G L +D+ + I N+N +HRNAQ A R S+E + R +
Sbjct: 615 RQLAGAIGYEPLSLTHRDKNKXDXICRNINRKHRNAQFAGRASIEYYVGQVXRNNESTET 674
Query: 358 ARIVKIRSNGFIVFVPKFGIEGPVYL 383
++K+ +NG +V VPKFG+EG + L
Sbjct: 675 GYVIKVFNNGIVVLVPKFGVEGLIRL 700
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant
Length = 664
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 178/430 (41%), Gaps = 54/430 (12%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R +
Sbjct: 248 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 307
Query: 74 LTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 132
L+ + I + + + I+S A L Y + ++++ P + + L ++ QRR
Sbjct: 308 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 367
Query: 133 IE---RGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
E AL I E + LDI R AN++VEE M+AAN+ A ++LR
Sbjct: 368 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRD 426
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNK 245
+ H + L GL++D L L R + P + +
Sbjct: 427 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 486
Query: 246 LIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLG 305
IR Q+ S + P H+GL Y +TSPIR+Y D++ HRLL A
Sbjct: 487 RIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAV-- 534
Query: 306 IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--AR 359
+ RPQ I + R R +MA R ++ +Y R K TDT A
Sbjct: 535 ---IKGETATRPQ-DEITVQMAERRRLNRMAER---DVGDWLYARFLKDKAGTDTRFAAE 587
Query: 360 IVKIR---------SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNL 410
IV I NG I F+P P R D V Q+ V++ G
Sbjct: 588 IVDISRGGMRVRLVDNGAIAFIP-----APFLHAVR------DELVCSQENGTVQIKGET 636
Query: 411 SYSVLQTVNI 420
Y V +++
Sbjct: 637 VYKVTDVIDV 646
>pdb|2IX0|A Chain A, Rnase Ii
Length = 663
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 178/430 (41%), Gaps = 54/430 (12%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R +
Sbjct: 247 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 306
Query: 74 LTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 132
L+ + I + + + I+S A L Y + ++++ P + + L ++ QRR
Sbjct: 307 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 366
Query: 133 IE---RGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
E AL I E + LDI R AN++VEE M+AAN+ A ++LR
Sbjct: 367 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRD 425
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNK 245
+ H + L GL++D L L R + P + +
Sbjct: 426 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 485
Query: 246 LIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLG 305
IR Q+ S + P H+GL Y +TSPIR+Y D++ HRLL A
Sbjct: 486 RIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAV-- 533
Query: 306 IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--AR 359
+ RPQ I + R R +MA R ++ +Y R K TDT A
Sbjct: 534 ---IKGETATRPQ-DEITVQMAERRRLNRMAER---DVGDWLYARFLKDKAGTDTRFAAE 586
Query: 360 IVKIR---------SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNL 410
IV I NG I F+P P R D V Q+ V++ G
Sbjct: 587 IVDISRGGMRVRLVDNGAIAFIP-----APFLHAVR------DELVCSQENGTVQIKGET 635
Query: 411 SYSVLQTVNI 420
Y V +++
Sbjct: 636 VYKVTDVIDV 645
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii
pdb|2ID0|B Chain B, Escherichia Coli Rnase Ii
pdb|2ID0|C Chain C, Escherichia Coli Rnase Ii
pdb|2ID0|D Chain D, Escherichia Coli Rnase Ii
Length = 644
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 171/435 (39%), Gaps = 54/435 (12%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T ++ G+ LD A R + YL I LP+ L++D+CSLRA+ R +
Sbjct: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPXLPRELSDDLCSLRANEVRPVLACRXT 287
Query: 74 LTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 132
L+ + I + + + I+S A L Y + ++++ P + + L ++ QRR
Sbjct: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347
Query: 133 IE---RGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
E AL I E + LDI R AN++VEE A A ++LR
Sbjct: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEE-AXIAANICAARVLRD 406
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNK 245
+ H + L GL++D L L R + P + +
Sbjct: 407 KLGFGIYNVHXGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466
Query: 246 LIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLG 305
IR Q+ S + P H+GL Y +TSPIR+Y D + HRLL A
Sbjct: 467 RIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDXINHRLLKAV-- 514
Query: 306 IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--AR 359
+ RPQ I R R + A R ++ +Y R K TDT A
Sbjct: 515 ---IKGETATRPQ-DEITVQXAERRRLNRXAER---DVGDWLYARFLKDKAGTDTRFAAE 567
Query: 360 IVKIR---------SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNL 410
IV I NG I F+P P R D V Q+ V++ G
Sbjct: 568 IVDISRGGXRVRLVDNGAIAFIP-----APFLHAVR------DELVCSQENGTVQIKGET 616
Query: 411 SYSVLQTVNIHMEVV 425
Y V +++ + V
Sbjct: 617 VYKVTDVIDVTIAEV 631
>pdb|2R7D|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7D|B Chain B, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7D|C Chain C, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Triclinic Crystal Form.
Northeast Structural Genomics Target Drr63
pdb|2R7F|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From
Deinococcus Radiodurans, Hexagonal Crystal Form.
Northeast Structural Genomics Target Drr63
Length = 469
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
+ADV V P +PLD EA RG ++YL +R I LP L L A S+ +
Sbjct: 120 VADVAALVAPDSPLDLEARARGATLYLPDRTIGXLPDELVAK-AGLGLHEVSPALSICLD 178
Query: 74 LTPE--AEIISTRYTKSVIKSCAALSYVEAQARMD 106
L P+ AE + T+ ++ L+Y EAQAR++
Sbjct: 179 LDPDGNAEAVDVLLTRVKVQR---LAYQEAQARLE 210
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 15/112 (13%)
Query: 273 HYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTS--IADNLNYRH 330
H+G LY TSP RRY D+VVH+ L A L R L+S A ++
Sbjct: 327 HHGXGLDLYAQATSPXRRYLDLVVHQQLRAFLA---------GRDPLSSKVXAAHIAESQ 377
Query: 331 RNA---QMASRGSVELHTLIYFRKRPTDT-EARIVKIRSNGFIVFVPKFGIE 378
NA + A R S HTL + +P +A +V R + +P +
Sbjct: 378 XNADATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRRGAQATLLIPDLAFD 429
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 279 PLYTHFTSPIRRYADVVVHR 298
P++ HF P +RYADV+V R
Sbjct: 167 PMHLHFVEPTKRYADVIVPR 186
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 1 MKLQYSSLMFQLDIADVTNFVHPG--TPLDDEASKR-----GTSVYLVERRIDMLPKPLT 53
+K S Q I+ TNF G L+++ KR S+Y VE++I LPK LT
Sbjct: 168 VKENESDSKLQCHISGTTNFXRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLT 227
>pdb|1CJD|A Chain A, The Bacteriophage Prd1 Coat Protein, P3, Is Structurally
Similar To Human Adenovirus Hexon
pdb|1CJD|B Chain B, The Bacteriophage Prd1 Coat Protein, P3, Is Structurally
Similar To Human Adenovirus Hexon
pdb|1CJD|C Chain C, The Bacteriophage Prd1 Coat Protein, P3, Is Structurally
Similar To Human Adenovirus Hexon
pdb|1HX6|A Chain A, P3, The Major Coat Protein Of The Lipid-Containing
Bacteriophage Prd1.
pdb|1HX6|B Chain B, P3, The Major Coat Protein Of The Lipid-Containing
Bacteriophage Prd1.
pdb|1HX6|C Chain C, P3, The Major Coat Protein Of The Lipid-Containing
Bacteriophage Prd1.
pdb|1HB9|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB9|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Wild
Type Virion, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB5|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
P3-Shell, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW7|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1
Capsid, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1GW8|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus607
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|B Chain B, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|C Chain C, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|E Chain E, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|F Chain F, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|H Chain H, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|I Chain I, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|K Chain K, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography.
pdb|1HB7|L Chain L, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
Mutant, Obtained By Combined Cryo-Em And X-Ray
Crystallography
Length = 394
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 118 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREAN-QMVEEFML 176
LRN ++A ++ R+I + S V Q++T+T DP + ++ + AN +V+ F++
Sbjct: 14 LRNQQAMAANLQARQI----VLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLV 69
Query: 177 AANVSVAEQ------ILRQFPLCSLLRR 198
++ L F +L++R
Sbjct: 70 KVTAAITNNHATEAVALTDFGPANLVQR 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,067,668
Number of Sequences: 62578
Number of extensions: 476560
Number of successful extensions: 1005
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 13
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)