BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013634
(439 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/440 (47%), Positives = 297/440 (67%), Gaps = 15/440 (3%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSLR+
Sbjct: 494 ELSNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLRS 553
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
+V+RLAFS IWE+ AEI+ TR+TKSVI S A+L+Y EAQ R+D + + D +TT LR +
Sbjct: 554 NVDRLAFSCIWEMNHNAEILKTRFTKSVINSKASLTYAEAQMRIDSAAMNDDITTSLRGL 613
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++ RIE+GALTL+S E++F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 614 NQLAKILKKGRIEKGALTLSSPEIRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 673
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P + L++ A + L + ++K+LADSLDRA D
Sbjct: 674 VAKKIHEEFSEHALLRKHPAPPPSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAESPDF 733
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYAD++VHRLL
Sbjct: 734 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLL 791
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L+ I NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 792 AVAIGADCTYPELTDKHKLSDICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 851
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-----------QQQKIVKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE VK+
Sbjct: 852 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPRLAYDDEIPSLRIEGTVFHVFDKVKVKI 911
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 912 TLDSSNLQHQKIRMALVEPQ 931
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/440 (48%), Positives = 298/440 (67%), Gaps = 15/440 (3%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ +L + IADV++F+ PG LD E+++RGT+VYL E+RIDM+P+ L+ ++CSL+
Sbjct: 494 ELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKC 553
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
DV+RLAFS IWE+ AEI+ T++TKSVI S A+L+Y EAQ R+D + + D +TT LR +
Sbjct: 554 DVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGL 613
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
N LAK +++RRIE+GALTL+S EV+F +D+ETHDP+D+ ++RE N MVEEFML AN+S
Sbjct: 614 NKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELRETNSMVEEFMLLANIS 673
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD- 240
VA++I +F +LLR+HP+P E L++ A + L + ++K+LA+SLD+A
Sbjct: 674 VAKKIHEEFSEHALLRKHPAPPPSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTF 733
Query: 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
PY N L+RILATRCM QAVYFCSG +FHHYGLA+P+YTHFTSPIRRYADV+VHRLL
Sbjct: 734 PYLNTLLRILATRCMMQAVYFCSG--MDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLL 791
Query: 301 SASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEAR 359
+ ++G D+ +L I NLN+RH+ AQ A R SV HT ++F+ + EA
Sbjct: 792 AVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSEEAY 851
Query: 360 IVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE-QQQKI----------VKMDG 408
I+ +R N +V +PK+G+EG V+ + + Y DE KI VK+
Sbjct: 852 ILFVRKNAIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKVKVKI 911
Query: 409 NLSYSVLQTVNIHMEVVEPQ 428
L S LQ I M +VEPQ
Sbjct: 912 MLDSSNLQHQKIRMSLVEPQ 931
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 286/427 (66%), Gaps = 5/427 (1%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV PGT +DDEA+ RGT+VYL +RRIDMLP L+ ++CSLR + ER AFS IW
Sbjct: 518 IADVTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWT 577
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
+T A+I S +Y KS+IKS AAL+Y +AQ +DD + + + LR + L+K + RR
Sbjct: 578 MTSSADIQSVKYHKSLIKSKAALTYEKAQEIIDDPKEQNDVALGLRGLMKLSKVLNARRT 637
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
GALTLAS+EV+F +D E+ P + Q + + MVEEFML AN+SVAE+IL ++P C
Sbjct: 638 GNGALTLASSEVRFDMDWESRTPKKVMEKQHLDTHSMVEEFMLLANISVAEKILEEYPDC 697
Query: 194 SLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRILAT 252
+LLRRHP P KE +PL+ A G + V S K LADSL+R V +P N+L+R+L T
Sbjct: 698 ALLRRHPVPLKESYKPLVEAARHRGFEIIVESGKGLADSLNRCVDKKNPMLNRLLRMLTT 757
Query: 253 RCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSV 312
RCMTQAVYF +G + P++ H+GLA +YTHFTSPIRRYADV+VHRLL+A++G + S
Sbjct: 758 RCMTQAVYFSAGTVPVPQYQHFGLACAIYTHFTSPIRRYADVIVHRLLAAAIGADDIQSG 817
Query: 313 FQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFV 372
++ + T I N+NYRH+ AQ A R SV+L+ + YF+ + E ++ +R+NG VFV
Sbjct: 818 LLNQARCTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKVETCEGFVMGVRNNGIQVFV 877
Query: 373 PKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432
PK+G+E + L G+ +D ++ VK++G++ L+ V + + V E RP
Sbjct: 878 PKYGLESIIVLQTSAASGT---TIDVEEMS-VKVNGDVVIKELEPVTVRISVNEKNQQRP 933
Query: 433 KLQLTLI 439
+++L LI
Sbjct: 934 RVELQLI 940
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/373 (50%), Positives = 256/373 (68%), Gaps = 6/373 (1%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV P T +D EA+ RGT+VYLV++RIDMLP L D+CSLR VER AFS IWE
Sbjct: 535 IADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWE 594
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRI 133
+ A II +TKSVI S A SY +AQAR+DD ++ DPLT +R + L+K ++Q+R+
Sbjct: 595 MDENANIIKVHFTKSVIASKEAFSYADAQARIDDQKMQDPLTQGMRVLLKLSKILKQKRM 654
Query: 134 ERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLC 193
+ GAL LAS EV+ Q D ET DP+D+ + Q+ E N +VEEFML AN+SVA++I FP
Sbjct: 655 DEGALNLASPEVRIQTDNETSDPMDVEIKQLLETNSLVEEFMLLANISVAQKIYDAFPQT 714
Query: 194 SLLRRHPSP---TKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG-DDPYFNKLIRI 249
++LRRH +P + L+ +LR G++L +SK+LA SLD V +PYFN L+RI
Sbjct: 715 AVLRRHAAPPLTNFDSLQDILRVCK--GMHLKCDTSKSLAKSLDECVDPKEPYFNTLLRI 772
Query: 250 LATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKL 309
L TRCM A YFCSG PP+F HYGLA+P+YTHFTSPIRRYADV+ HR L+A++ +
Sbjct: 773 LTTRCMLSAEYFCSGTFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAAAIDYETI 832
Query: 310 PSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFI 369
D+ +L I + +NYRHR AQMA R S+E + + + +A ++K+ NGF+
Sbjct: 833 NPSLSDKSRLIEICNGINYRHRMAQMAGRASIEYYVGQALKGGVAEEDAYVIKVFKNGFV 892
Query: 370 VFVPKFGIEGPVY 382
VF+ +FG+EG VY
Sbjct: 893 VFIARFGLEGIVY 905
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/386 (48%), Positives = 255/386 (66%), Gaps = 6/386 (1%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + + IADVT+FV PGT LD E + RGTSVYLV++RIDMLP L D+CSL+
Sbjct: 558 KLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKP 617
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
V+R AFSVIWEL A I++ + KSVI+S A SY +AQ R+DD D LT +R +
Sbjct: 618 YVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRAL 677
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
L+ K++Q+R+E GAL LAS EVK +D+ET DP ++ + ++ N +VEEFML AN+S
Sbjct: 678 LKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANIS 737
Query: 182 VAEQILRQFPLCSLLRRH---PSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
VA +I FP ++LRRH PS E+L +L T + ++L+ SSKALADSLDR V
Sbjct: 738 VARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLE--SSKALADSLDRCVD 795
Query: 239 -DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
+DPYFN L+RI++TRCM A YF SG + P+F HYGLA +YTHFTSPIRRY DVV H
Sbjct: 796 PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAH 855
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTE 357
R L+ ++G L +D+ ++ I N+N +HRNAQ A R S+E + R +
Sbjct: 856 RQLAGAIGYEPLSLTHRDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTET 915
Query: 358 ARIVKIRSNGFIVFVPKFGIEGPVYL 383
++K+ +NG +V VPKFG+EG + L
Sbjct: 916 GYVIKVFNNGIVVLVPKFGVEGLIRL 941
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 242/393 (61%), Gaps = 30/393 (7%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW+
Sbjct: 408 IADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWK 467
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD------SRLMDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ +++ + P++ + +
Sbjct: 468 LTPEGKILEEWFGRTIIRSCTKLSYDHAQSMIENPTEKIPEEELPPISPEHSVEEVHQAV 527
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++S+AK++R++R GAL L ++ F +D ET P +Y+ R++N++VEEFML A
Sbjct: 528 LNLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRDSNKLVEEFMLLA 587
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA +I R FP +LLRRHP P +ML L+ +GL +DVSS+ AL SL + G
Sbjct: 588 NMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFG 647
Query: 239 DDPYF---NKLIRILATRCMTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +++ + +R M A+YFCSG L E F HY L PLYTHFTSPIRR+ADV
Sbjct: 648 DDKYSLARKEVLTNMYSRPMQMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADV 707
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----- 349
+VHRLL+A+LG + P V D L AD+ N R +MAS+ EL ++F
Sbjct: 708 IVHRLLAAALGYSEQPDVEPD--TLQKQADHCNDR----RMASKRVQELSIGLFFAVLVK 761
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
P ++EA ++ + + F V V +FG++ +Y
Sbjct: 762 ESGPLESEAMVMGVLNQAFDVLVLRFGVQKRIY 794
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/429 (38%), Positives = 238/429 (55%), Gaps = 38/429 (8%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LDNGNLELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS------------- 108
V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 554 VDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQDLLDGNFSVVKDIPEFKDL 613
Query: 109 ------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162
++ L +R + +A+ +R +R GAL L EV+ Q+D E + D+
Sbjct: 614 DEKSRQAKLEELVWAIRKLTDIARHIRAKRDSCGALELEGVEVRIQLD-EKKNIHDLIPK 672
Query: 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD 222
Q E ++ V E M+ AN VA++I FP +LLRRHP P +E L A A G +D
Sbjct: 673 QPLEVHETVAECMILANHWVAKKIWESFPHQALLRRHPPPHQEFFSELRECAKAKGFFID 732
Query: 223 VSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 281
S+KALADSLD A +DP NKL+R +AT+ M+ A+YF +G EFHHYGLA Y
Sbjct: 733 TRSNKALADSLDNANDPNDPIVNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKY 792
Query: 282 THFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASR 338
THFTSPIRRY+D++VHRLL A++ K + ++ L + ++N R+R AQ + +
Sbjct: 793 THFTSPIRRYSDIIVHRLLMAAISKDKKMEIQENLFSNKDLEELCRHINNRNRAAQHSQK 852
Query: 339 GSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYLTPR------ 386
S EL +YF+ + +TE R I IR+NG +VF+P+FGI+G YL +
Sbjct: 853 QSTELFQCMYFKDKDPETEERCISDGVIYSIRTNGVLVFIPRFGIKGAAYLRNKDGLVVS 912
Query: 387 -GQKGSGDW 394
G G +W
Sbjct: 913 CGPDGHSEW 921
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/472 (36%), Positives = 255/472 (54%), Gaps = 47/472 (9%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS------------- 108
V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 554 VDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNFSIVDDIPEFKTL 613
Query: 109 ------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162
++ L + + +A+ +R +R GAL L EV+ Q+D + + D+
Sbjct: 614 EEQNRQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEVRVQLD-DKKNIHDLIPK 672
Query: 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD 222
Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 673 QPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFID 732
Query: 223 VSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 281
S+K LADSLD A DP NKL+R +AT+ M+ A+YF +G EFHHYGLA Y
Sbjct: 733 TRSNKTLADSLDSANDPSDPLVNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKY 792
Query: 282 THFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASR 338
THFTSPIRRY+D+VVHRLL A++ K + ++ L + ++N R+R AQ + +
Sbjct: 793 THFTSPIRRYSDIVVHRLLMAAISKDKKVEIKENLFSNKNLEELCRHINNRNRAAQRSQK 852
Query: 339 GSVELHTLIYFRKRPTDTEARIV------KIRSNGFIVFVPKFGIEGPVYLTPR------ 386
S EL +YF+ R +TE R V IR+NG +VF+P+FGI+G YL +
Sbjct: 853 QSTELFQCMYFKDRDPETEERCVVDGIIYSIRTNGVLVFIPRFGIKGAAYLKNKDGLVIS 912
Query: 387 -GQKGSGDWY---VDEQQQKIVKMDG---NLSYSVLQTVNIHMEVVEPQPNR 431
G +GS +W + Q KI+ ++++ + V + + V QP+R
Sbjct: 913 CGPEGSSEWKPGSLQRSQNKIISTTAGGQSVTFHLFDHVTVRISV---QPSR 961
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 280 bits (716), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/421 (38%), Positives = 242/421 (57%), Gaps = 35/421 (8%)
Query: 8 LMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLA 67
L + IADVT+FV G+ D EA R T+ YL +RR DMLP L+ D+CSL V+R A
Sbjct: 494 LELGVHIADVTHFVREGSLTDLEARSRATTYYLADRRYDMLPAVLSADLCSLLGGVDRYA 553
Query: 68 FSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRL---------------- 110
SV+WEL E E+ S + +++I+S L Y AQ+ ++ +
Sbjct: 554 MSVLWELDAETLEVCSVWFGRTLIRSSYQLHYELAQSLLNGEEVEVPELNPLKGSQRDQK 613
Query: 111 MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 170
M L L + +A+ +R +R + GAL L EV+ Q+D E + + Q E ++
Sbjct: 614 MSELLQALETLTRVARHLRAQRDKGGALELEGVEVRAQLDEEKNITALVPK-QPLEVHET 672
Query: 171 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 230
V E M+ AN VA +I FP +LLR HP P +E L+ +A A G ++D S++ALA
Sbjct: 673 VAECMIYANHWVARKIQESFPHHALLRHHPPPKQEFFNHLIDSAKAHGFSIDTRSNRALA 732
Query: 231 DSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIR 289
DSL+RAV DP N+L+R++AT+ M+ A+YF +G +++HYGLA YTHFTSPIR
Sbjct: 733 DSLERAVDPRDPLVNRLLRMMATQAMSNALYFSTGSCPEEQYYHYGLALARYTHFTSPIR 792
Query: 290 RYADVVVHRLLSASLGIYKLPS---VFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTL 346
RYADV+VHRLL A++ + K S +L +A ++N ++R AQ + + S+EL
Sbjct: 793 RYADVIVHRLLMAAVQLEKDESPSKALACNKELEELAQHINNKNRAAQHSQKQSIELFQC 852
Query: 347 IYFRKRPTDTEARIV------KIRSNGFIVFVPKFGIEGPVYLTPR-GQ------KGSGD 393
+YFR + + T+ R V +R+NGF+ FVP++G++G VYL R GQ G +
Sbjct: 853 MYFRDKDSHTDERCVADAVIYAVRANGFLAFVPQYGLKGAVYLKDREGQVISVDGDGKCE 912
Query: 394 W 394
W
Sbjct: 913 W 913
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 172/480 (35%), Positives = 258/480 (53%), Gaps = 44/480 (9%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS------------- 108
V+R A SV+WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 554 VDRYAVSVMWELDKTSYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNFSIVDDIPELKAL 613
Query: 109 ------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162
++ L + + +A+ +R +R GAL L EV+ Q+D + + D+
Sbjct: 614 DKQSQQAKLEELVWAIGKLTDIARHIRAKRDRCGALELEGVEVRVQLD-DKKNIRDLIPK 672
Query: 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD 222
Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 673 QPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFID 732
Query: 223 VSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 281
S+K LADSLD A DP NKL+R +AT+ M+ A+YF +G EFHHYGLA Y
Sbjct: 733 TRSNKTLADSLDSANDPKDPLVNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKY 792
Query: 282 THFTSPIRRYADVVVHRLLSASLGIYKLPSVFQD---RPQLTSIADNLNYRHRNAQMASR 338
THFTSPIRRY+D+VVHRLL A++ K + ++ L + ++N R+R AQ + +
Sbjct: 793 THFTSPIRRYSDIVVHRLLMAAISKDKKMEIKENLFSNKNLEELCRHINNRNRAAQRSQK 852
Query: 339 GSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYLTPR------ 386
S EL +YF+ R +TE R I IR+NG +VF+P+FGI+G YL +
Sbjct: 853 QSTELFQCMYFKDRDAETEERCIADGVIYSIRTNGVLVFIPRFGIKGAAYLKNKDSLVIS 912
Query: 387 -GQKGSGDWY---VDEQQQKIVKMDG---NLSYSVLQTVNIHMEVVEPQPNRPKLQLTLI 439
G +GS +W + Q KI+ ++++ + V + + V + + ++L ++
Sbjct: 913 CGPEGSSEWKPGSLQRSQNKIISTTAGGQSVTFHLFDHVTVRISVQASRCHSDTIRLEIV 972
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 236/393 (60%), Gaps = 30/393 (7%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD A++R TSVYLV++ + MLP+ L E++CSL ++L FSVIW
Sbjct: 410 IADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWT 469
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDD------SRLMDPLTTD---------L 118
LTPE +I+ + +++I+SC LSY AQ+ ++ ++ + P++ + +
Sbjct: 470 LTPEGKILDEWFGRTIIRSCTKLSYEHAQSMIESPTEKIPAKELPPISPEHSSEEVHQAV 529
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +AK++RQ+R GAL L ++ F +D ET P +Y+ RE+N++VEEFML A
Sbjct: 530 LNLHGIAKQLRQQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLA 589
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA +I R FP +LLRRHP P ML L+ +GL +D SS+ AL SL + G
Sbjct: 590 NMAVAHKIHRAFPEQALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFG 649
Query: 239 DDPYFNKLIRILATRC---MTQAVYFCSGDLT-PPEFHHYGLAAPLYTHFTSPIRRYADV 294
DD Y +L C M A+YFCSG L P +F HY L PLYTHFTSPIRR+ADV
Sbjct: 650 DDKYSLARKEVLTNMCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADV 709
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----- 349
+VHRLL+A+LG + + D L AD+ N R +MAS+ EL T ++F
Sbjct: 710 LVHRLLAAALGYRERLDMAPD--TLQKQADHCNDR----RMASKRVQELSTSLFFAVLVK 763
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
P ++EA ++ I F V V ++G++ +Y
Sbjct: 764 ESGPLESEAMVMGILKQAFDVLVLRYGVQKRIY 796
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 272 bits (696), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 230/389 (59%), Gaps = 22/389 (5%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ FV G+ LD AS+R TSVYLV++ I MLP+ L E++CSL +RL FSVIW+
Sbjct: 381 IADVSYFVAEGSALDIMASERATSVYLVQKVIPMLPRLLCEELCSLNPMTDRLTFSVIWK 440
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD--DSRL-------------MDPLTTDL 118
+TP+ EI+ + +SVI SC LSY AQ ++ D ++ ++ + +
Sbjct: 441 ITPQGEILDEWFGRSVICSCVKLSYDHAQNMINHPDKKIEQHELPPVSPQHTINEIHQAV 500
Query: 119 RNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAA 178
N++ +A+ +R++R + GAL L ++ F +D E+ P +YQ R++N++VEEFML A
Sbjct: 501 LNLHLIAQNLRKQRFDDGALRLDQLKLTFTLDKESGLPQGCYIYQYRDSNKLVEEFMLLA 560
Query: 179 NVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVG 238
N++VA I R+FP +LLRRHP P +ML L+ +GL LD +SS L SL+
Sbjct: 561 NMAVAHHIYRRFPEEALLRRHPPPQTKMLNDLIEFCDQMGLQLDFTSSGTLHKSLNDQFE 620
Query: 239 DDPYFNKLIRILATRC---MTQAVYFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADV 294
D Y +L C M AVYFC+G L FHHY L PLYTHFTSPIRR+ADV
Sbjct: 621 TDEYSAARKEVLTNMCSRPMQMAVYFCTGALKDETLFHHYALNVPLYTHFTSPIRRFADV 680
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK-RP 353
+VHRLL+ASLG P + + + AD+ N R ++ S EL ++ ++ P
Sbjct: 681 IVHRLLAASLGCG--PPLKMPKEVIQKQADHCNDRKTASKRVQELSAELFFSVFVKECGP 738
Query: 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVY 382
++EA ++ + + F V V +FG++ +Y
Sbjct: 739 LESEAMVMGVLNEAFDVIVLRFGVQKRIY 767
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 272 bits (695), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 161/412 (39%), Positives = 232/412 (56%), Gaps = 33/412 (8%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS------------- 108
V+R A S++WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 554 VDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNLSVVDDIPEFKDL 613
Query: 109 ------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162
++ L + + +A+ +R +R GAL L EV+ Q+D + + D+
Sbjct: 614 DEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVRVQLD-DKKNIHDLIPK 672
Query: 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD 222
Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 673 QPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFID 732
Query: 223 VSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 281
S+K LADSLD A G DP N+L+R +AT+ M+ A+YF +G EFHHYGLA Y
Sbjct: 733 TRSNKTLADSLDNANGPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKY 792
Query: 282 THFTSPIRRYADVVVHRLLSASLGIYK----LPSVFQDRPQLTSIADNLNYRHRNAQMAS 337
THFTSPIRRY+D+VVHRLL A++ K ++F ++ L + ++N R+R AQ +
Sbjct: 793 THFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHINNRNRAAQHSQ 851
Query: 338 RGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
+ S EL +YF+ + TE R I IR+NG +VF+P+FGI+G YL
Sbjct: 852 KQSTELFQCMYFKDKDPATEERCISDGVIYSIRANGVLVFIPRFGIKGAAYL 903
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 231/409 (56%), Gaps = 31/409 (7%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL L + IADVT+FV P T D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 486 KLPSGHLELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLPLILSADLCSLLG 545
Query: 62 DVERLAFSVIWEL-TPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLR- 119
V+R A SVIWE+ + EI Y +++I+S LSY AQ MD ++PL T++
Sbjct: 546 GVDRYAVSVIWEMDSSTYEIRRVWYGRTIIRSSYKLSYEVAQQLMDGD--LEPLNTEMEL 603
Query: 120 ------------------NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGM 161
+ +A R RR GAL L EV+ Q+ E H D+
Sbjct: 604 HPLKQDPVRLEQLLWAVGKLTEVAHATRMRRDMSGALELEGVEVRVQLG-EKHSIDDLVP 662
Query: 162 YQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL 221
Q + ++ + E M+ AN VA++I +P +LLR HP +E + L A A G ++
Sbjct: 663 KQPLQMHETIAECMILANHWVAKKIWECYPQHALLRLHPPARQEFFQELKECAKARGFSI 722
Query: 222 DVSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPL 280
D S+KALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF+HYGLA
Sbjct: 723 DTRSNKALADSLDQANDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEFYHYGLALEK 782
Query: 281 YTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGS 340
YTHFTSPIRRYAD+VVHRLL A++ ++ ++ L + ++N R+R AQ + S
Sbjct: 783 YTHFTSPIRRYADIVVHRLLLAAVNKGPKDNLLGNK-DLEELCRHINVRNRAAQHCQKQS 841
Query: 341 VELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
EL ++F+ + D++ R I IR+NG ++F+P++GI+G YL
Sbjct: 842 TELFQCMFFKDKDPDSDQRCISDAVIYGIRTNGVLLFLPRYGIKGAAYL 890
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 228/403 (56%), Gaps = 31/403 (7%)
Query: 8 LMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLA 67
L + IADVT+FV T D EA R T+ YL +RR DMLP L+ D+CSL V+R A
Sbjct: 493 LELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLPLILSADLCSLLGAVDRYA 552
Query: 68 FSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTD--------- 117
SVIWE+ EI Y +++I+S LSY AQ +D ++PL+T+
Sbjct: 553 VSVIWEMDCSTYEIRRVWYGRTIIRSSYKLSYEVAQQLLDGD--LEPLSTEKELHPLKQD 610
Query: 118 ----------LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREA 167
+ M +A R RR GAL L EV+ Q+ E H D+ Q +
Sbjct: 611 PARLQQLLWAVGKMTEVAHATRMRRNMSGALELEGVEVRVQLG-EKHSIDDLVPKQPLQV 669
Query: 168 NQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSK 227
++ + E M+ AN VA++I +P +LLR HP P +E + L A A G ++D S+K
Sbjct: 670 HETIAECMILANHWVAKKIWESYPQHALLRLHPPPRQEFFQELKECAKARGFSIDTRSNK 729
Query: 228 ALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTS 286
ALADSLD+A DP N+L+R++AT+ M+ A YF +G T EF+HYGLA YTHFTS
Sbjct: 730 ALADSLDQAHDPSDPLVNQLLRMMATQAMSNARYFSTGSYTEDEFYHYGLALEKYTHFTS 789
Query: 287 PIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTL 346
PIRRYAD+VVHRLL A++ + ++ L + ++N R+R AQ + S EL
Sbjct: 790 PIRRYADIVVHRLLLAAVNKGPKDHLLGNK-DLEELCRHINARNRAAQQCQKQSTELFQC 848
Query: 347 IYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
++F+ + D++ R I IR+NG ++F+P++GI+G YL
Sbjct: 849 MFFKDKDPDSDQRCISDAVIYGIRTNGVLLFIPRYGIKGAAYL 891
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 264 bits (675), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 158/412 (38%), Positives = 230/412 (55%), Gaps = 33/412 (8%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L +L + IADVT+FV P + +D EA R T+ YL +RR DMLP L+ D+CSL
Sbjct: 494 LNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSLLGG 553
Query: 63 VERLAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDS------------- 108
V+R A S++WEL + EI Y +++I+S L Y AQ +D +
Sbjct: 554 VDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNLSVVDDIPEFKDL 613
Query: 109 ------RLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162
++ L + + +A+ +R +R GAL L EV Q+D + + D+
Sbjct: 614 DEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQLD-DKKNIHDLIPK 672
Query: 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD 222
Q E ++ V E M+ AN VA++I FP +LLR+HP P +E L A A G +D
Sbjct: 673 QPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFID 732
Query: 223 VSSSKALADSLDRAVG-DDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLY 281
S+K LADSLD A DP N+L+R +AT+ M+ A+YF +G EFHHYGLA Y
Sbjct: 733 TRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKY 792
Query: 282 THFTSPIRRYADVVVHRLLSASLGIYK----LPSVFQDRPQLTSIADNLNYRHRNAQMAS 337
THFTSPIRRY+D+VVHRLL A++ K ++F ++ L + ++N R++ AQ +
Sbjct: 793 THFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNK-DLEELCRHINNRNQAAQHSQ 851
Query: 338 RGSVELHTLIYFRKRPTDTEAR------IVKIRSNGFIVFVPKFGIEGPVYL 383
+ S EL +YF+ + TE R I IR+NG ++F+P+FGI+G YL
Sbjct: 852 KQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFIPRFGIKGAAYL 903
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 215/397 (54%), Gaps = 33/397 (8%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADVT+FV P + LD EA+ R T+VYLV++ I MLP L E +CSL +VERLAFSV W+
Sbjct: 480 IADVTHFVKPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWK 539
Query: 74 LTPEAEIISTRY-TKSVIKSCAALSYVEAQARMDDSRLMDP-------------LTTDLR 119
L + I R+ K+VIK+CA L+Y EAQ ++ D + T +
Sbjct: 540 LDSNGKEIGKRWFGKTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSIL 599
Query: 120 NMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAAN 179
+ +++K+R+ R +GA+ + S E+KFQ+D E P +Y+ +AN ++EEFML AN
Sbjct: 600 TLCEISRKLRKDRFAKGAVEINSTELKFQLD-EYGMPNKCEVYEQTDANHLIEEFMLLAN 658
Query: 180 VSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGD 239
SVAE I + F SLLRRH SP ++ + ++ + D SSS A S+ R
Sbjct: 659 RSVAEHISKNFSNNSLLRRHASPKEKQINEFCHFLKSMNFDFDASSSAAFNASMVRLRS- 717
Query: 240 DPYFN----KLIRILATRCMTQAVYFCSGDL-TPPEFHHYGLAAPLYTHFTSPIRRYADV 294
FN +L +A R + +A YFC+GD ++HHY L+ YTHFTSPIRRY D+
Sbjct: 718 --TFNEELVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFNHYTHFTSPIRRYPDI 775
Query: 295 VVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYF----- 349
+VHRLL SL K S D+ + +A + N + + S +L +Y
Sbjct: 776 IVHRLLERSL---KNTSPGIDKKNCSLVAAHCNEKKEKSTTVQEDSQQLFLSVYIAEYCK 832
Query: 350 --RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLT 384
K+ +A +I N V++ ++GI V L+
Sbjct: 833 KHDKKSMPVQAFATRISGNSIDVYISEYGISNRVDLS 869
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 223/405 (55%), Gaps = 40/405 (9%)
Query: 7 SLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERL 66
L + IADVT F+ GT LD AS+RG S YL + I MLP+ L E +CSL V+RL
Sbjct: 371 GLEIGVHIADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLPRILCEQLCSLNPGVDRL 430
Query: 67 AFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSR---LMDPLTTDLRNMNS 123
+FS +++++ EAE+ + +SVI+S L+Y AQ +++ D L D+ + N+
Sbjct: 431 SFSTVFKMSYEAELYDVWFGRSVIRSRVKLAYEHAQDFIENPEKDFTCDEL-PDISDGNT 489
Query: 124 -------------LAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM 170
+A+ +RQ+R + GAL + +KF +D E P + +Y+I+++N++
Sbjct: 490 PFEIKEKTLMLHRIAQVLRQKREDSGALRIELPRLKFALD-EDKKPQGVSIYEIKDSNKL 548
Query: 171 VEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALA 230
VEEFML AN+ VA++I FP +LLR HP P ++M++ + A +G LD +S L+
Sbjct: 549 VEEFMLLANMEVAKKIAENFPEHALLRNHPPPKEKMIKDVAEQCARIGFPLDGRTSGLLS 608
Query: 231 DSLDRAVGD---DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSP 287
SL + G D ++I L + M QA YFC+ ++ +HH+ L YTHFTSP
Sbjct: 609 TSLRKYQGKSRLDMCIRQVISSLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSP 668
Query: 288 IRRYADVVVHRLLSASLGIY----KLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVEL 343
IRRY DV+VHR L+A+LG ++P Q+ + R + ++AS+ + +
Sbjct: 669 IRRYPDVIVHRQLAAALGYNERSERVPEEIQE----------ICTRCNDTKLASKEASDE 718
Query: 344 HTLIYF-----RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYL 383
++YF + P +A ++ + F V + ++G+ VY+
Sbjct: 719 SAMLYFGVFIHQTGPMKCQAVVLGVMDLSFDVLIVEYGVVKRVYV 763
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/395 (32%), Positives = 198/395 (50%), Gaps = 23/395 (5%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL S + IADV+++V +P+D EA +RGTSVYLV+R I M+P L+ ICSL
Sbjct: 275 KLDDGSYKLGVHIADVSHYVTENSPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSLNP 334
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARM--DDSRL---MDPLTT 116
V+RL S + + ++ +SVIK+ ++Y + + DD L +PL
Sbjct: 335 KVDRLTLSCEMTINSQGQVTEHEIFQSVIKTTERMTYSDVNKILVDDDEELKQKYEPLVP 394
Query: 117 DLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFML 176
++M LA+ +R +R++RGA+ E K +D E D+ + + A +++EEFML
Sbjct: 395 MFKDMERLAQILRDKRMDRGAVDFDFKEAKVLVDDEGA-VKDVVIRERSVAEKLIEEFML 453
Query: 177 AANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS----KALADS 232
AN +VAE + + R H P E L+ L G + ++ +AL
Sbjct: 454 VANETVAEH-FHWMNVPFIYRIHEEPNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSI 512
Query: 233 LDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYA 292
LD AV D P +I + R M QA Y P H+GL+ YTHFTSPIRRY
Sbjct: 513 LD-AVRDRPE-ETVISTVMLRSMKQAKY------DPQSLGHFGLSTEFYTHFTSPIRRYP 564
Query: 293 DVVVHRLLSASLGIYKLPSVFQDR--PQLTSIADNLNYRHRNAQMASRGSVELHTLIY-F 349
D++VHRL+ L K+ Q++ +L IA++ + R A A R + +L Y
Sbjct: 565 DLIVHRLIRTYLINGKVDEATQEKWAERLPDIAEHTSSMERRAVDAERETDDLKKAEYML 624
Query: 350 RKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLT 384
K + + I + + G V +P IEG V+++
Sbjct: 625 DKIGEEFDGMISSVTNFGMFVELPN-TIEGLVHVS 658
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 131/393 (33%), Positives = 193/393 (49%), Gaps = 19/393 (4%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + + + IADV+++V G+ LD EA KRGTSVYL++ I MLP L+ ICSL
Sbjct: 273 KLPNGNYLLGVHIADVSHYVKEGSALDQEAFKRGTSVYLIDTVIPMLPFRLSNGICSLVE 332
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM---DPLTTDL 118
+RL SV E+ + ++ SVIKS + Y ++D M +P +
Sbjct: 333 GKDRLTMSVEMEIDRDGRVVRYDVYPSVIKSKKRMIYERVNEFLEDPSSMKEYEPFKDLI 392
Query: 119 RNMNSLAKKMRQRRIERGA-LTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 177
N LA+ +R+ R +RGA L + S EVK +D E +DI + A +++EEFM+
Sbjct: 393 YNAVELAEILREARRKRGAILDIESDEVKVILD-ENGQVVDIVPRKRGIAEKLIEEFMIR 451
Query: 178 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS--KALADSLDR 235
AN +VAE I L + R H P E + L A+G+ S + L
Sbjct: 452 ANETVAE-IFDHAGLPFMYRVHEEPDPETIFQLKNYLEAMGIRAKFSHKIHPGMLQKLLE 510
Query: 236 AVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVV 295
V D P + + R+L R M +A+Y + H+GLA+ YTHFTSPIRRY D+V
Sbjct: 511 KVKDHPLRSSVERLL-VRSMKRAMY------SAVNIGHFGLASYAYTHFTSPIRRYPDLV 563
Query: 296 VHRLLSASL---GIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR 352
VHRLL L G + + + L IA + + R R A A V + + Y +
Sbjct: 564 VHRLLKLYLEQNGYFTPEQIEKFSKVLPKIAKHCSRRERVADEAEWDLVAMKKVEYIARH 623
Query: 353 PTDTEARIV-KIRSNGFIVFVPKFGIEGPVYLT 384
+ +V I G V +P+ I G V+++
Sbjct: 624 IGEVFNVVVTNITKFGLFVEIPEKSISGLVHIS 656
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 217/440 (49%), Gaps = 46/440 (10%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
+L+ + + IADV+++V +PLD EA +RGTSVY+ +R + MLP+ L+ ICSL
Sbjct: 286 RLENGNYELGVHIADVSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNP 345
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSY--VEAQARMDDSRLMD--PLTTD 117
+ RL S + E++PE +I+ + ++S+IK+ ++Y V D++ L + +
Sbjct: 346 RINRLTQSCVMEISPEGRVINYQISQSIIKTTERMTYDAVNQMIAGDEAALENYAKIADS 405
Query: 118 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 177
++ M L + R RGA+ + E K I E P++I A +M+E FML
Sbjct: 406 VKIMVELHHILEAMRKRRGAIDFDTVEAKI-IVNEKGLPIEIRKRTRGIAERMIESFMLE 464
Query: 178 ANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSS----KALADSL 233
AN +VA L + R H P + L+ + AA G+ ++ +S+ K L +
Sbjct: 465 ANETVATH-FEAHGLPFIYRIHEQPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFM 523
Query: 234 DRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYAD 293
+ G ++ + R M QA Y + + H+GLAA YTHFTSPIRRY D
Sbjct: 524 KKIKGQPGEM--VLSTMLLRSMQQARYSENNE------GHFGLAAENYTHFTSPIRRYPD 575
Query: 294 VVVHRLLSASLGIYKLPS-VFQD-RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK 351
++VHRL+ +G K P+ + Q ++ IA++ ++R R A A R VE F +
Sbjct: 576 LLVHRLIR-EIGEGKTPANILQKWEDKIPEIAEHSSHRERRAVDAER-EVEKMKKAEFME 633
Query: 352 RPTDTEARIVKIRSNGFIVFVPKFG--------IEGPVYLTPRGQKGSGDWYVDEQQQKI 403
E G I V +FG IEG V+++ GD++ Q+++
Sbjct: 634 EHVGEEYE-------GIIASVTRFGMFIELENTIEGLVHISTL----KGDYF--NYQERM 680
Query: 404 VKMDG---NLSYSVLQTVNI 420
+ + G L++ + Q + I
Sbjct: 681 LALIGERSGLTFKIGQPIKI 700
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 159/305 (52%), Gaps = 20/305 (6%)
Query: 6 SSLMFQLD--IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADV 63
S+ F+L IADV+++V G+ LD+EA R TSVY+ +R + MLP L+ ++CSL
Sbjct: 231 SNWHFELGVHIADVSHYVTEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQ 290
Query: 64 ERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEA-----QARMDDSRLMD---PLT 115
ERL S + E+ + +I+S + + SVIK+ ++Y Q + ++ +T
Sbjct: 291 ERLTMSCLMEIDDKGKIVSYKISPSVIKTTYRMTYNNVNKMIHQGQEGHREALENFFKIT 350
Query: 116 TDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFM 175
++ L + + R +RG + +E K +D + H P++I A +M+E FM
Sbjct: 351 DSIKVAVELHEILETMRKDRGMIEFDESEAKIILDEKGH-PIEIVKRDRDTAERMIESFM 409
Query: 176 LAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDR 235
L AN +VA ++ L SL R H +P ++ L+ AA G +L+ S +A+ D
Sbjct: 410 LMANETVALDFQKK-KLPSLYRVHDNPKEKSFAKLMEAAANAGFSLNSDSHQAINFFADE 468
Query: 236 AVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVV 295
G K + M+ AVY + H+GLAA YTHFTSPIRRY D++
Sbjct: 469 IKGTSS--EKALTYQLRHTMSTAVY------SEKNTKHFGLAATNYTHFTSPIRRYPDLI 520
Query: 296 VHRLL 300
+HRLL
Sbjct: 521 IHRLL 525
>sp|P57628|RNR_BUCAI Ribonuclease R OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnr PE=3 SV=2
Length = 731
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/443 (27%), Positives = 207/443 (46%), Gaps = 34/443 (7%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P TPLD A +RGTSVY I MLP+ ++ D+CSL+ +VERL
Sbjct: 301 IADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCSLKPNVERLCLICEMS 360
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLM----DPLTTDLRNMNSLAKKMR 129
L+ + E+IS ++ + +I S +Y E + + D+ N++ L
Sbjct: 361 LSKQGELISYKHYEGIICSHGRFTYNEIFKIWNGDIFLRSKYKKFLKDIENLSCLQNIFN 420
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQ-IR-EANQMVEEFMLAANVSVAEQIL 187
+ I + + + E KF +D+ +YQ IR +A++ +E M+ ANV+ A + +
Sbjct: 421 KDNISKKGIYFENIEPKFVLDSNLRIK---SIYQNIRNDAHKFIESCMILANVASA-RFV 476
Query: 188 RQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL--DVSSSKALADSLDRAVGDDPYFNK 245
++ L R H P K+ + L +G L S +L + V D P + +
Sbjct: 477 EKYKYPVLFRNHDRPKKDNVVSLRLFLNELGFTLLGGDSPESVHYSNLLKNVSDRPEY-E 535
Query: 246 LIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL----- 300
+I+ + R MTQAVY +P H+GL+ Y HFTSPIRRY D+++HR++
Sbjct: 536 MIQTVLLRSMTQAVY------SPDNRGHFGLSLSSYVHFTSPIRRYPDLILHRVIKYLLF 589
Query: 301 ---SASLGIYKLPSV-FQDRPQLTSIADNLNYRHRNAQMASRGSVE-LHTLIYFRKRPTD 355
+ S Y S ++ I + + R A A+R ++ L ++K
Sbjct: 590 KDKNTSKSNYNFYSAHLYSTGEIKKIGAHCSITERRADEANRDVIDWLKCDFMYKKIGCI 649
Query: 356 TEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVL 415
I + + GF V + +F I+G V++ +Y D K++ +Y +
Sbjct: 650 LNGVISNVTTFGFFVRLNQFFIDGLVHINSLNDDY---YYFDSLGLKLIGKSTKNTYCLG 706
Query: 416 QTVNIHMEVVEPQPNRPKLQLTL 438
+ + +V+ N K++L+L
Sbjct: 707 DALKV--KVISVNLNEKKIELSL 727
>sp|P21499|RNR_ECOLI Ribonuclease R OS=Escherichia coli (strain K12) GN=rnr PE=1 SV=2
Length = 813
Score = 145 bits (366), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 198/428 (46%), Gaps = 29/428 (6%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P TPLD EA RGTSVY + I MLP+ L+ +CSL V+RL
Sbjct: 299 IADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEA----QARMDDSRLMDPLTTDLRNMNSLAKKMR 129
++ + + ++ ++V+ S A L+Y + Q D PL L +++L K +
Sbjct: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
+ R ERG ++ S E KF + E I Q +A++++EE M+ AN+S A + + +
Sbjct: 419 KAREERGGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEECMILANISAA-RFVEK 476
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLI 247
+L R H P+ E + A +GL L + D L +V D P +++
Sbjct: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD-AEML 535
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR----LLSAS 303
+ + R M QA+Y P H+GLA Y HFTSPIRRY D+ +HR LL+
Sbjct: 536 QTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589
Query: 304 LG----IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT-EA 358
G + ++ + + + R A A+R + + + + +
Sbjct: 590 QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKG 649
Query: 359 RIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSVLQT 417
I + GF V + I+G V+++ D+Y D+ Q+++ +Y +
Sbjct: 650 VISSVTGFGFFVRLDDLFIDGLVHVSSL----DNDYYRFDQVGQRLMGESSGQTYRLGDR 705
Query: 418 VNIHMEVV 425
V + +E V
Sbjct: 706 VEVRVEAV 713
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 208/433 (48%), Gaps = 26/433 (6%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V GT D EA KRG + Y +R + MLP+ L+ +CSLR + ++LAF+V
Sbjct: 279 IADVSYYVREGTETDKEAYKRGFTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMV 338
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP----LTTDLRNMNSLAKKMR 129
+ + +SVI+S A L+Y EA A + ++ L LR M +L + +
Sbjct: 339 FDESGNLKAYDIYESVIRSKARLTYNEALALIVGDPALEKKFPNLVEPLRMMETLYRILS 398
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
++R E G++ E + +D E +P I Y+ A++++E FM++AN +VA +
Sbjct: 399 RKRWEMGSIDFDLPEAEVIVD-EYGEPTAIYPYERHVAHRIIEHFMISANETVALHLEHA 457
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDD----PYFNK 245
C L R H P +E +E LL GL V + + +D P N
Sbjct: 458 GYPC-LYRVHEPPDEEKVENLLEILE--GLGYKVKRPHEYTPKFFQKIIEDFEGRPEEN- 513
Query: 246 LIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLG 305
L+R L R M +A Y +P H+GLA Y HFTSPIRRY D++VHRLL +L
Sbjct: 514 LVRFLTLRAMARAKY------SPHNVGHFGLALEHYAHFTSPIRRYPDIIVHRLLKKALR 567
Query: 306 IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIV-KIR 364
++ + L ++L+ + R A A +++ Y + R + I+ +
Sbjct: 568 GEEI-DYEKTLAYLEEAGNHLSKQERIADEAEMEAIDYLKARYMKGRIGEEFIGIITGVV 626
Query: 365 SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYV-DEQQQKIVKMDGNLSYSVLQTVNIHME 423
+ GF V + + +EG V + + D YV DE ++V + + + V +
Sbjct: 627 AFGFFVELEENLVEGLVKINTL----TDDEYVFDEPAHRLVGVRTGKVFRLGDHVKVRCI 682
Query: 424 VVEPQPNRPKLQL 436
V+ + R + +L
Sbjct: 683 AVDEERARVEFEL 695
>sp|P30851|RNR_SHIFL Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4
Length = 813
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 198/428 (46%), Gaps = 29/428 (6%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P TPLD EA RGTSVY + I MLP+ L+ +CSL V+RL
Sbjct: 299 IADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMT 358
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEA----QARMDDSRLMDPLTTDLRNMNSLAKKMR 129
++ + + ++ ++V+ S A L+Y + Q D PL L +++L K +
Sbjct: 359 VSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLD 418
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
+ R ERG ++ S E KF + E I Q +A++++EE M+ AN+S A + + +
Sbjct: 419 KAREERGGISFESEEAKFIFNAERRIER-IEQTQRNDAHKLIEECMILANISAA-RFVEK 476
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPYFNKLI 247
+L R H P+ E + A +GL L + D L +V D P +++
Sbjct: 477 AKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPD-AEML 535
Query: 248 RILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR----LLSAS 303
+ + R M QA+Y P H+GLA Y HFTSPIRRY D+ +HR LL+
Sbjct: 536 QTMLLRSMKQAIY------DPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKE 589
Query: 304 LG----IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT-EA 358
G + ++ + + + R A A+R + + + + +
Sbjct: 590 QGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKG 649
Query: 359 RIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSYSVLQT 417
I + GF V + I+G V+++ D+Y D+ Q+++ +Y +
Sbjct: 650 VISSVTGFGFFVRLDDLFIDGLVHVSSL----DNDYYRFDQVGQRLMGESSGQTYRLGDR 705
Query: 418 VNIHMEVV 425
V + +E V
Sbjct: 706 VEVRVEAV 713
>sp|Q98QL0|RNR_MYCPU Ribonuclease R OS=Mycoplasma pulmonis (strain UAB CTIP) GN=rnr PE=3
SV=1
Length = 725
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 156/297 (52%), Gaps = 13/297 (4%)
Query: 8 LMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLA 67
+ + IADV ++V + +D EA +R TS+YL I MLP+ L+ ICSL V+RL
Sbjct: 268 FLLSVHIADVAHYVKENSAIDKEALRRATSIYLPHMVIPMLPEKLSNGICSLNPGVDRLV 327
Query: 68 FSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDP-LTTDLRNMNSLAK 126
S+ + + I T + +I S L+Y + ++ +DP L L + L+K
Sbjct: 328 MSIDIFIDFQGNTIKTELYEGIINSKHRLTYNQVNDFYNNKIKLDPNLEKMLNDSLELSK 387
Query: 127 KMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQI 186
+ + + G + L E K +D E + I + Q + ++E FM+ AN +VA +
Sbjct: 388 ILENYKKDEGYINLEIEESKVILDKEGK-TVGIKVIQRGLSEVLIENFMVRANEAVAWK- 445
Query: 187 LRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLD---VSSSKALADSLDRAVGDDPYF 243
+ + L S+ R H +P+ E L +T +G++ D ++S KA +DS ++ + +
Sbjct: 446 MNKLKLPSIYRVHDNPSIESLVLFEKTLKTLGIDFDTPKITSPKAFSDSFEK-IKQNYQI 504
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLL 300
+ ++++ R M +A+Y + H+GLA+ Y+HFTSPIRRY D+ +HRL+
Sbjct: 505 DNFVKLMVLRTMEKAIY------SDKNIGHFGLASSYYSHFTSPIRRYPDLQLHRLI 555
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 115/435 (26%), Positives = 214/435 (49%), Gaps = 25/435 (5%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
I+DV+ ++ P T LD ASKRGTS+Y I MLP+ ++ D+CSL + ERL+
Sbjct: 303 ISDVSYYIQPDTALDKAASKRGTSIYFPSLVIPMLPEKISIDVCSLNPNAERLSLICEMN 362
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEA----QARMDDSRLMDPLTTDLRNMNSLAKKMR 129
L+ + E+I+ ++ ++VI S +Y E ++ L ++N++SL K ++
Sbjct: 363 LSNKGELITYKHYEAVICSHGRFTYNEIFKIWNGDIELCFKYKKLLKYIQNLSSLQKILK 422
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
+ + + + + E KF +D+ + +I +A++ +E M+ AN++ AE +++
Sbjct: 423 KYNVSKRGIYFENIEAKFILDS-NYRIKNISQNIRNDAHKFIESCMILANIASAE-FVKK 480
Query: 190 FPLCSLLRRHPSPTKEML---EPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKL 246
L R H P K+ + +L+ L ++ S ++ L + Y ++
Sbjct: 481 HKSPVLFRNHDRPDKDSIINFRSVLKKLGLSLLGGEIPESTDYSELLKKISTRPDY--EM 538
Query: 247 IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
I+ + R M QAVY +P H+GL+ Y HFTSPIRRY D++VHR++ L
Sbjct: 539 IQTILLRSMKQAVY------SPDNRGHFGLSLSSYVHFTSPIRRYPDLLVHRVIKNLLLK 592
Query: 307 YKLPSVFQ--DRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIV-KI 363
K S + + ++T I + + R A A+R ++ + +K+ D ++ +
Sbjct: 593 EKNLSKYHLYNLNEVTKIGLHCSMTERRADEATRDVLDWLKCDFMQKKIGDVLTGVISNV 652
Query: 364 RSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 423
S GF V + +F I+G V++ +Y D K++ +Y + T+ + +
Sbjct: 653 TSFGFFVRLNQFFIDGLVHIATLIDDY---YYFDSIGLKLIGKSSKNTYCLGDTLKV--K 707
Query: 424 VVEPQPNRPKLQLTL 438
V+ N K++L+L
Sbjct: 708 VISVNLNERKIELSL 722
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 138 bits (347), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 174/378 (46%), Gaps = 25/378 (6%)
Query: 9 MFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAF 68
+ + IADV+++V P + LD EA+KR S+Y + I MLP L++++CSL+ +V+RLA
Sbjct: 238 ILGVHIADVSHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAV 297
Query: 69 SVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKM 128
SV + E + R +SVI+S ++Y E + + +L P++ + M L++
Sbjct: 298 SVFMTFSKEGFLSDYRILRSVIRSKYRMTYDEVD-EIIEKKLAHPISKTILEMAELSRIF 356
Query: 129 RQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILR 188
R +RG L +D +P+ + + A++++EEFML AN +A I
Sbjct: 357 SDIREQRGCTRLVLPSFTMSLDN-LQEPVALVENKQTAAHKLIEEFMLKANEVIAYHISH 415
Query: 189 QFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKA--LADSLDRAVGDDPYFNKL 246
Q + R H P +E L TA A+G + + ++ L P +
Sbjct: 416 Q-GITMPFRIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQETSAGHP-LEPI 473
Query: 247 IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
+ R M A Y HYGL YTHFTSPIRRY D++VHRLL L +
Sbjct: 474 LHSQFVRSMKTASYSTENK------GHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSV 527
Query: 307 YKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK----RP-TDTEARIV 361
+ L I + + R A A + + + +K +P T +A I+
Sbjct: 528 --------EEGHLEQIVRACSSQERVAAKAEGAFINIKKARFLKKFLDEQPATLYKAFII 579
Query: 362 KIRSNGFIVFVPKFGIEG 379
+ G +P+ EG
Sbjct: 580 TVSPEGLSFVLPELCHEG 597
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 173/378 (45%), Gaps = 25/378 (6%)
Query: 9 MFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAF 68
+ + IADV+++V P + LD EA+KR S+Y + I MLP L++++CSL+ +V+RLA
Sbjct: 238 ILGVHIADVSHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAV 297
Query: 69 SVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKM 128
SV + E + R +SVI+S ++Y E + + + P++ + M L++
Sbjct: 298 SVFMTFSKEGFLSDYRILRSVIRSKYRMTYDEVD-EIIEKKQTHPISKTILKMAELSRIF 356
Query: 129 RQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILR 188
R +RG L +D +P+ + + A++++EEFML AN +A I
Sbjct: 357 SDIREQRGCTRLVLPSFTMSLDN-LQEPVALIENKQTAAHKLIEEFMLKANEVIAYHISH 415
Query: 189 QFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKA--LADSLDRAVGDDPYFNKL 246
Q + R H P +E L TA A+G + + ++ L P +
Sbjct: 416 Q-GITMPFRTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHP-LEPI 473
Query: 247 IRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGI 306
+ R M A Y HYGL YTHFTSPIRRY D++VHRLL L +
Sbjct: 474 LHSQFVRSMKTASYSTENK------GHYGLCLDYYTHFTSPIRRYVDLIVHRLLFHPLSV 527
Query: 307 YKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK----RP-TDTEARIV 361
+ L I + + R A A V + + +K +P T +A I+
Sbjct: 528 --------EEEHLEQIVRACSSQERIAAKAEGAFVNIKKARFLKKFIEEQPATLYKAFII 579
Query: 362 KIRSNGFIVFVPKFGIEG 379
G +P+F EG
Sbjct: 580 TASPEGISFVLPEFCHEG 597
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 158/316 (50%), Gaps = 26/316 (8%)
Query: 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRA 61
KL + IADV+ +V P T LD +A KRGTS YLV+R I MLP ++ +ICSL
Sbjct: 276 KLNDQRYFLGISIADVSFYVQPNTILDADAFKRGTSTYLVDRVIPMLPHNISNNICSLNE 335
Query: 62 DVERLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNM 121
R+ + + + +I +++K+ +SY E + + T ++ M
Sbjct: 336 GEFRMCITCDMVIDKDGKICWKDVYPAIMKNYRQMSYDEVNDFYEGKSRFESATLTMKEM 395
Query: 122 NSLAKK----MRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 177
AK+ +R ++I+ G + E K +D ET P+DI +Y+ + A MVE+FM+A
Sbjct: 396 LLEAKELHHILRNKKIKDGYVDFDIKEPKIILD-ETGVPIDIKIYERKTAQMMVEDFMIA 454
Query: 178 ANVSVA-------EQILRQFPLCS--LLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKA 228
AN +V ++ L++F L + R H P+ L+ A + N+
Sbjct: 455 ANEAVTMFAEEHMDKTLKEFNLEMPFIYRVHDKPSIINLQKFEIEAKKLSFNISHDFENI 514
Query: 229 LADSLDRAVG-DDPYFN-KLIRILATRCMTQAVY--FCSGDLTPPEFHHYGLAAPLYTHF 284
+++ + +D + N LI L R M +A Y +G H+GLA+ YTHF
Sbjct: 515 QPNTISNWLKMNDNHVNLPLISKLLLRSMAKASYEIINTG--------HFGLASDNYTHF 566
Query: 285 TSPIRRYADVVVHRLL 300
TSPIRRY D++VHRLL
Sbjct: 567 TSPIRRYPDLIVHRLL 582
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 171/381 (44%), Gaps = 25/381 (6%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
++ + + IADV+++V P + LD EA+KR S Y + I MLP L++++CSL+ +V+R
Sbjct: 238 NNYILGVHIADVSHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDR 297
Query: 66 LAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLA 125
LA SV T + + +SVI+S ++Y E + + + PL+ L M +L+
Sbjct: 298 LAVSVFMTFTKSGHLSDYQIFRSVIRSKYRMTYDEVD-NIIEKKHSHPLSKILNEMATLS 356
Query: 126 KKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQ 185
KK R ERG + V +D +P+ + +++++EEFML AN VA
Sbjct: 357 KKFSDIREERGCIRFVLPSVTMSLDN-LQEPVALIENHQTFSHKLIEEFMLKANEVVAYH 415
Query: 186 ILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKA--LADSLDRAVGDDPYF 243
I Q + R H P E L A +G ++ + ++ L P
Sbjct: 416 ISHQ-GVSLPFRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHP-L 473
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 303
+++ R M A Y HYGL YTHFTSPIRRY D++VHRLL
Sbjct: 474 EQVLHSQFVRSMKTASYSTENK------GHYGLKLDYYTHFTSPIRRYIDLIVHRLLFNP 527
Query: 304 LGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK----RPTDT-EA 358
L I D+ L I + + R + A L + K +P T A
Sbjct: 528 LSI--------DQTHLEIIVRACSTKERVSAKAENSFENLKKTRFINKFLQEQPKTTYHA 579
Query: 359 RIVKIRSNGFIVFVPKFGIEG 379
I+ G V +F EG
Sbjct: 580 YIITANHEGLSFVVTEFCHEG 600
>sp|P40611|RNR_VIBPA Ribonuclease R OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnr PE=3 SV=2
Length = 835
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/395 (29%), Positives = 188/395 (47%), Gaps = 41/395 (10%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P + LD EA RG SVY + + MLP+ L+ +CSL V+RL
Sbjct: 306 IADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD---PLTTDLRNMNSLAKKMR 129
++ ++ S ++ ++V+ S A L+Y + A ++ D L + PL + L ++++ K ++
Sbjct: 366 ISESGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQPLVSHLEELHAMYKVLK 425
Query: 130 QRRIERGALTLASAEVKFQIDTETH----DPLDIGMYQIR-EANQMVEEFMLAANVSVAE 184
+ R +RGA+ + E KF + E +P+ IR +A++++EE M+ AN++ A
Sbjct: 426 EARDQRGAIEFETVETKFIFNAERKIESIEPV------IRNDAHKIIEECMILANIASA- 478
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRA---VGDDP 241
++ + +L R H SP + L+ + +GL L + D D A G
Sbjct: 479 SLVEKAKEPALYRIHESPGELRLQGFRDFLSELGLELKGGLEPSPTDYADLARQIAGRQD 538
Query: 242 YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLS 301
+LI+ + R M QAVY H+GLA Y HFTSPIRRY D+++HR +
Sbjct: 539 --QELIQTMLLRSMKQAVY------NADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIK 590
Query: 302 ASLGIYKLPSVFQDRPQLTS-----------IADNLNYRHRNAQMASRGSVELHTLIYFR 350
I K QDR T + + R A A+R + Y +
Sbjct: 591 YL--IAKEEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQ 648
Query: 351 KRPTDT-EARIVKIRSNGFIVFVPKFGIEGPVYLT 384
D E I + S GF V + I+G V+++
Sbjct: 649 DHVGDELEGVIANVTSFGFFVRLTDLHIDGLVHIS 683
>sp|Q9KNY1|RNR_VIBCH Ribonuclease R OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rnr PE=3 SV=1
Length = 821
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 39/394 (9%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V P T LD EA RG SVY + + MLP+ L+ +CSL V+RL
Sbjct: 306 IADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT 365
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMD---PLTTDLRNMNSLAKKMR 129
++ ++ ++ ++V+ S A L+Y + ++ D L + L L ++ + + ++
Sbjct: 366 VSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLK 425
Query: 130 QRRIERGALTLASAEVKF----QIDTETHDPLDIGMYQIR-EANQMVEEFMLAANVSVAE 184
R ERGA+ + E KF Q E+ +P+ +R +A++++EE M+ AN++ A
Sbjct: 426 SARDERGAIEFETVETKFIFNAQRKIESIEPV------VRNDAHKLIEECMILANIASA- 478
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPY 242
++ + +L R H P +E L +GL+L + D +L + +G+ P
Sbjct: 479 SLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERP- 537
Query: 243 FNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSA 302
+LI+ + R M QAVY H+GLA Y HFTSPIRRY D+++HR +
Sbjct: 538 DKELIQTMLLRSMKQAVY------NADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKY 591
Query: 303 SLGIYKLPSVFQDRPQLTS-----------IADNLNYRHRNAQMASRGSVELHTLIYFRK 351
I K QDR T + + R A A+R + Y +
Sbjct: 592 L--IAKQEGRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQD 649
Query: 352 R-PTDTEARIVKIRSNGFIVFVPKFGIEGPVYLT 384
+ E + + S GF V + + I+G V+++
Sbjct: 650 HVGEELEGVVANVTSFGFFVRLTELHIDGLVHIS 683
>sp|P24276|SSD1_YEAST Protein SSD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SSD1 PE=1 SV=1
Length = 1250
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 173/383 (45%), Gaps = 16/383 (4%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
+L + DVT+ + G+ +D A KR ++V++ ++ +++LP+ +++ SL E
Sbjct: 722 GTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLLPQSFNDEL-SLAPGKES 780
Query: 66 LAFSVIWELTPEA-EIISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
SV++ L I ST +S I LS ++D+ T+ L + +
Sbjct: 781 ATLSVVYTLDSSTLRIKSTWVGESTISPSNILSL----EQLDEKLSTGSPTSYLSTVQEI 836
Query: 125 AKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAE 184
A+ RRI TL + + +D+ + ++ E N +VAE
Sbjct: 837 ARSFYARRINDPEATLLPTLSLLESLDDEKVKVDLNILDRTLGFVVINEIKRKVNSTVAE 896
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFN 244
+I + +LLRR P + + G N D +++ L + + DD
Sbjct: 897 KIYTKLGDLALLRRQMQPIATKMASFRKKIQNFGYNFDTNTADELIKGVLKIKDDDVRVG 956
Query: 245 KLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASL 304
I IL + M +A YF +G + P ++ HY L P+YTHFT+P+RRYAD VVHR L A
Sbjct: 957 --IEILLFKTMPRARYFIAGKVDPDQYGHYALNLPIYTHFTAPMRRYADHVVHRQLKAV- 1013
Query: 305 GIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTE-----AR 359
I+ P +D L ++ N++ A A ++ L T A
Sbjct: 1014 -IHDTPYT-EDMEALKITSEYCNFKKDCAYQAQEQAIHLLLCKTINDMGNTTGQLLTMAT 1071
Query: 360 IVKIRSNGFIVFVPKFGIEGPVY 382
++++ + F VF+P+FGIE V+
Sbjct: 1072 VLQVYESSFDVFIPEFGIEKRVH 1094
>sp|P44907|RNR_HAEIN Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnr PE=3 SV=1
Length = 782
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 198/433 (45%), Gaps = 39/433 (9%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IADV+ +V + LD EA RG SVY R + MLP+ L+ +CSL V+RL +
Sbjct: 306 IADVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSLNPQVDRLCMVCEMQ 365
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARMD-DSRLMDPLTT---DLRNMNSLAKKMR 129
++ + ++ R+ ++V+ S A L+Y + ++ D L +T L + L + +
Sbjct: 366 ISAKGKLTDYRFYEAVMNSHARLTYTKVAKMLEGDEELRTRYSTLVPHLEELYKLYQALL 425
Query: 130 QRRIERGALTLASAEVKFQIDT----ETHDPLDIGMYQIR-EANQMVEEFMLAANVSVAE 184
R +RGA+ + E KF + E +P+ +R +A +++EE M AN++ A
Sbjct: 426 SARHQRGAIDFETIETKFIFNAMGRIERIEPV------VRNDAXKIIEECMXLANIAAA- 478
Query: 185 QILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDPY 242
+ + +L R H +P++E L + GL L+ D +L V + P
Sbjct: 479 NFMEKHKEPALYRIHATPSEEKLTSFRTFLSEFGLTLEGGLKPTTKDYAALLEKVKERPD 538
Query: 243 FNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR---- 298
++LI+ + R ++QAVY H+GLA Y HFTSPIRRY D+ +HR
Sbjct: 539 -HELIQTMLLRSLSQAVYHADN------IGHFGLALEEYAHFTSPIRRYPDLTLHRGIKY 591
Query: 299 LLSASLGIYK----LPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR-P 353
LL+ G + ++ + ++ + R A A+R + Y +
Sbjct: 592 LLAKEQGAKRKTTDTGGYHYSFDEMDLLGNHCSMTERRADDATREVADWLKCEYMQDHVG 651
Query: 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWY-VDEQQQKIVKMDGNLSY 412
+ I + G V + I+G V+++ D+Y D +Q+++ + + Y
Sbjct: 652 GEFSGVISSVTGFGLFVRLDDLFIDGLVHISTL----ENDYYQFDAAKQRLIGENSGMQY 707
Query: 413 SVLQTVNIHMEVV 425
+ V I +E V
Sbjct: 708 RLGDKVRIKVEAV 720
>sp|P47350|RNR_MYCGE Ribonuclease R OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=rnr PE=3 SV=1
Length = 725
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 178/387 (45%), Gaps = 36/387 (9%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRI-DMLPKPLTEDICSLRADVE 64
+ + + IADV ++V+ + +D EA + +S+YL + MLP+ L+ +CSL +
Sbjct: 294 TGFVLYVAIADVAHYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQK 353
Query: 65 RLAFSVIWELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDSRLMD---PLTTDLRNM 121
R + I + + + I S SY + +++ ++ + L+
Sbjct: 354 RYVVVCEISFDNQGRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDETVINSLKAA 413
Query: 122 NSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
+L+ ++ +R +RG + L+ E + +D E + P+ I +A M+E M+ AN +
Sbjct: 414 FTLSDLIQAQRQKRGTIDLSHKETEIVVD-EHYFPIKINFLVHDKAETMIENLMVVANET 472
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGL-----NLDVSSSKALADSLDRA 236
VA +L + R HP P+K+ L+ L+ T + + NLD +S +A L+
Sbjct: 473 VA-WVLTNNKIALPYRVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNEN 531
Query: 237 VGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVV 296
D+P + ++ IL R + +A Y + P H+ + + YTHFTSPIRRY D+ +
Sbjct: 532 -KDNPSY-EIFVILLLRTLGKAFY----SVNP--LMHFSIGSNHYTHFTSPIRRYIDLTI 583
Query: 297 HRLLSASLGIYKLPSVFQD------RPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR 350
HRLL L P F D + +L IAD +N R + + T +
Sbjct: 584 HRLLWMHLFT---PDQFTDNERDQLKQELEKIADTVNDTEIKIINCERNANDYLTTLLLS 640
Query: 351 KRPTDTEARIVKIRSNGFIVFVPKFGI 377
K+ T + GFI + FGI
Sbjct: 641 KQIGKTFS--------GFISAITSFGI 659
>sp|P75529|RNR_MYCPN Ribonuclease R OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=rnr PE=3 SV=1
Length = 726
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 180/380 (47%), Gaps = 37/380 (9%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRI-DMLPKPLTEDICSLRADVERLAFSVIW 72
IADV +V + LD EA + +S+YL + MLP+ L+ ++CSL + +R
Sbjct: 302 IADVAYYVQRNSELDIEARHKTSSIYLPGYYVVPMLPERLSNELCSLNPNEKRYVVVCEL 361
Query: 73 ELTPEAEIISTRYTKSVIKSCAALSYVEAQARMDDS-RLMDPLTTDLRNMN---SLAKKM 128
EA + + + I S +Y E ++DS L D T L ++ +L++ +
Sbjct: 362 NFDHEARLNFSEVYPATIVSQRRFAYSEVNDWLEDSDALKDESATVLESLKAGFTLSELI 421
Query: 129 RQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILR 188
++R ++G + L+ +E + +D + + P++I +A M+E M+ AN +VA L
Sbjct: 422 AEQRKKKGTIDLSHSETEVVVD-QNYYPIEIRFLTHGKAETMIENLMVVANEAVA-WTLT 479
Query: 189 QFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLN-----LDVSSSKALADSLDRAVGDDPYF 243
+ R HP P+K+ L+ LL + + LD +S +A L + D+P +
Sbjct: 480 NHKVHLPYRVHPRPSKKKLQMLLENIVELKITQPNFVLDTVTSTQIAAWL-KENKDNPSY 538
Query: 244 NKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSAS 303
+ + IL R + +A Y + + H+ + + YTHFTSPIRRYAD+ VHRLL +
Sbjct: 539 DIFV-ILLLRTLGKAFYIVNPLI------HFSIGSHHYTHFTSPIRRYADLTVHRLLWMN 591
Query: 304 LGIYKLPSVFQD--RPQLTS----IADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTE 357
L P F D R QL + I + +N R + + T +Y K+ T
Sbjct: 592 LFT---PERFTDTEREQLNAELEQICETINDTEIKINGCERTANDYLTTLYLSKQVGQT- 647
Query: 358 ARIVKIRSNGFIVFVPKFGI 377
+GFI + FGI
Sbjct: 648 -------FHGFISAITSFGI 660
>sp|A8GF49|RNB_SERP5 Exoribonuclease 2 OS=Serratia proteamaculans (strain 568) GN=rnb
PE=3 SV=1
Length = 644
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 187/442 (42%), Gaps = 52/442 (11%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
SL + IAD T +V G+PLD+ A KR + YL I MLP+ L++++CSLR + R
Sbjct: 220 GSLQLTIAIADPTAYVEQGSPLDEIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNQRR 279
Query: 66 LAFSVIWELTPEAEII-STRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
+ + + + R+ + I+S A L Y E ++ P + D+ +L
Sbjct: 280 PVLACRVTIGADGALADDIRFFAAEIESKAKLVYDEVSDWLEGIAGWQPPSDDIAQQITL 339
Query: 125 AKK---MRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
K+ +R + AL + E + L+I Q R AN++VEE M+A+NV
Sbjct: 340 LKRVCDVRNSWRHQHALVFKDRPDYRFVLGEKGEVLEIVTEQRRTANRIVEECMIASNVC 399
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGD 239
A +LR + H ++E + A G+ D L L R +
Sbjct: 400 AA-IVLRDRLGFGIYNVHTGFDPLLVEQAVTVLQANGVEADAEKLLTLDGFCELRRHLDS 458
Query: 240 DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRL 299
P + L +R Y +++ HYGL Y +TSPIR+Y D+V HRL
Sbjct: 459 QP-----TQFLDSRIRRSQTY---AEISTTPGPHYGLGLEAYATWTSPIRKYGDMVNHRL 510
Query: 300 LSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR--KRPTDTE 357
L A I + P+ ++PQ + L R R +MA R ++ +Y R K T+
Sbjct: 511 LKAI--IAEQPA---EKPQ-DEVTVQLAERRRLNRMAER---DVGDWLYARYLKDKAGTD 561
Query: 358 ARI-------------VKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIV 404
R V++ NG + F+P P R D V Q+ V
Sbjct: 562 ERFNAEIIDVTRGGLRVRLLDNGAVAFIP-----APFIHAVR------DEMVCSQETGTV 610
Query: 405 KMDGNLSYSVLQTVNIHMEVVE 426
++ G + Y Q N+ + + E
Sbjct: 611 QIKGEVVYR--QGDNLQVTIAE 630
>sp|A7MMD8|RNB_CROS8 Exoribonuclease 2 OS=Cronobacter sakazakii (strain ATCC BAA-894)
GN=rnb PE=3 SV=1
Length = 644
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 117/446 (26%), Positives = 194/446 (43%), Gaps = 64/446 (14%)
Query: 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRAD 62
L L + IAD T ++ G+ LD+ A R + YL I MLP+ L++D+CSLR
Sbjct: 217 LDGDRLQLTVAIADPTAWIAEGSKLDNIAKVRAFTNYLPGFNIPMLPRELSDDLCSLREG 276
Query: 63 VERLAFSVIWELTPEAEII-STRYTKSVIKSCAALSYVEAQARMDDSRLMDP----LTTD 117
V+R A + + I + ++I+S A L+Y + +++ P +
Sbjct: 277 VQRPALVCRMIIEADGAISDDIHFFAAIIESKAKLAYDDVSDWLEEKGDWQPGSEAIAAQ 336
Query: 118 LRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLA 177
+R + + ++ R E + + +F + E + LDI R AN++VEE M+A
Sbjct: 337 IRLLQQICQRRSAWRTEHALVFKDRPDYRFVL-GEKGEVLDIVAEPRRIANRIVEESMIA 395
Query: 178 ANVSVAEQILRQ---FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLD 234
AN+ A ++LR F + ++ + E L LL++ G+++D + L
Sbjct: 396 ANICAA-RVLRDKLGFGVYNVHAGFDPASTEQLATLLQSH---GMHVDANDVLTL----- 446
Query: 235 RAVGDDPYFNKLIRILATR----CMTQAVYFCS-GDLTPPEFHHYGLAAPLYTHFTSPIR 289
P F KL R L + ++ F S +++ H+GL Y +TSPIR
Sbjct: 447 ------PGFCKLRRELDAQPSGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR 500
Query: 290 RYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIY- 348
+Y D+V HRLL A I K S RPQ + + R R +MA R ++ +Y
Sbjct: 501 KYGDMVNHRLLKA---IIKGESA--TRPQDEATV-QMAERRRLNRMAER---DVGDWLYA 551
Query: 349 -FRKRPTDTEARI-------------VKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDW 394
F K T++R V++ NG + F+P P R D
Sbjct: 552 RFLKDKAGTDSRFAAEIIDVSRGGMRVRLVDNGAVAFIP-----APFLHAVR------DE 600
Query: 395 YVDEQQQKIVKMDGNLSYSVLQTVNI 420
V Q+ V++ G Y V +++
Sbjct: 601 LVCSQENGTVQIKGETVYKVTDVIDV 626
>sp|A0KFR1|RNB_AERHH Exoribonuclease 2 OS=Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240) GN=rnb PE=3 SV=1
Length = 673
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 171/384 (44%), Gaps = 45/384 (11%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T +V G+ LD EA++R +VY+ R + M+P+ L++++CSL+ ER
Sbjct: 229 IADPTAYVAEGSELDKEAAQRAFTVYMPGRNVPMIPRTLSDELCSLKEGEERNTLCARLL 288
Query: 74 LTPEAEII-STRYTKSVIKSCAALSYVEAQARMDDSRLMD---PLTTDLRNMNSLAKKMR 129
+ + ++ T + + I S A L+Y + + + +D + L M ++ +
Sbjct: 289 IAEDGLLLEETEFFAARISSHARLTYDDVSDWAEHGKQLDIDAGVLAQLPLMKAMTEARI 348
Query: 130 QRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
R E + + F++ E + L I + R AN+MVEE M+AAN+ + +Q
Sbjct: 349 AWRTEHALVFPDRPDYDFEL-GENGEVLAIHVEPRRIANRMVEESMIAANICAGRVLGKQ 407
Query: 190 FPLCSLLRRHPSPTKEMLE---PLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPYFNKL 246
+ H +E L+ LL++A A +++S +
Sbjct: 408 VGY-GIFNVHTGFDEESLDGAIDLLKSAEAPFEKEEIASLSGFC-----------ALRRW 455
Query: 247 IRILATRCMTQAV-YFCSGDLTPPE-FHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASL 304
I L TR + + F S L E HYGL Y +TSPIR+Y D+V HRLL A +
Sbjct: 456 IDNLDTRWLDGKIRRFQSYALMSAEPGAHYGLGLDAYATWTSPIRKYGDMVNHRLLKAVI 515
Query: 305 GIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDT------EA 358
K P +RP L + ++L R +M R ++ +Y R D A
Sbjct: 516 A-GKTPG---ERPSL-ELTEHLTACRRLHRMVER---DIGDWLYVRYLKADAGTDKVFNA 567
Query: 359 RIV---------KIRSNGFIVFVP 373
I+ ++R NG +VF+P
Sbjct: 568 EIIDVMRAGLKLRLRENGAVVFMP 591
>sp|D0Z8E6|RNB_EDWTE Exoribonuclease 2 OS=Edwardsiella tarda (strain EIB202) GN=rnb PE=3
SV=2
Length = 647
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 162/386 (41%), Gaps = 33/386 (8%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
SL + IAD T +V +PLD EA R + YL I MLP+ L++D+CSLR R
Sbjct: 222 GSLCLTIAIADPTAYVSADSPLDAEARHRAFTTYLPGFNIPMLPRDLSDDLCSLREGQRR 281
Query: 66 LAFSVIWELTPEAEI-ISTRYTKSVIKSCAALSYVEA----QARMDDSRLMDPLTTDLRN 120
+ L + + R+ I+S A L Y + R D D + +R
Sbjct: 282 PVLACEVTLDADGSLRDDIRFFSGWIESKAKLVYDRVSDWLEGRGDWQPPSDDIAAQIRL 341
Query: 121 MNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV 180
++ +A Q R + + + +F +D + D DI R AN++VEE M+ ANV
Sbjct: 342 LHRVANARTQWRQQHALVFRDRPDYRFVLD-DHGDVTDIVAEPRRVANRIVEECMITANV 400
Query: 181 SVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNL-DVSSSKALADSLDRAVGD 239
A +LR+ + H +P L A LN DV+++ +LD
Sbjct: 401 CAA-LVLRERLGFGIYNVHTG-----FDPALVEQAVSLLNANDVAANAEALLTLDGFCTL 454
Query: 240 DPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRL 299
+ + L + + F P H+GL Y +TSPIR+Y D+V HRL
Sbjct: 455 RRHLDSLPSTFLDSRIRRFQTFAEISTEPGP--HFGLGLEAYATWTSPIRKYGDMVNHRL 512
Query: 300 LSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKR---PTDT 356
L A I P+ D P +T L R R +MA R + + + + PT
Sbjct: 513 LKAL--IAGAPATRPD-PAMTL---QLAERRRQNRMAERDVGDWLYARFLKDKVNAPTPF 566
Query: 357 EARIVKIR---------SNGFIVFVP 373
A I+ I NG + F+P
Sbjct: 567 NAEIIDISRGGMRVRLLENGAVAFIP 592
>sp|A6T7Z4|RNB_KLEP7 Exoribonuclease 2 OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=rnb PE=3 SV=1
Length = 644
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 193/439 (43%), Gaps = 56/439 (12%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
L+ + IAD T ++ G+ LD+ A R + YL I MLP+ L++D+CSLRA+ R
Sbjct: 220 GKLLLTVAIADPTAWIAEGSKLDNAAKVRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279
Query: 66 LAFSVIWELTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
+ L + I + + + I+S A L+Y + ++ P + + +L
Sbjct: 280 PVLACRMTLAADGTIEDNIEFFAATIESKAKLAYDDVSDWLEGRGSWQPDSEAIAQQITL 339
Query: 125 AKKMRQRRIE---RGALTLAS-AEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV 180
K + QRR E AL + +F + E + LDI R AN++VEE M+AAN+
Sbjct: 340 LKDVCQRRSEWRQTHALVFKDRPDYRFVL-GEKGEVLDIVAEPRRIANRIVEESMIAANI 398
Query: 181 SVAEQILRQ---FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDR 235
A ++LR F + ++ E L LL+T +++D + L L R
Sbjct: 399 CAA-RVLRDKLGFGVYNVHTGFDPANTEQLAALLKTH---DVHVDPTEVLTLEGFCKLRR 454
Query: 236 AVGDDP--YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYAD 293
+ P + + IR Q+ S + P H+GL Y +TSPIR+Y D
Sbjct: 455 ELDAQPTGFLDSRIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGD 504
Query: 294 VVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE-LHTLIYFRKR 352
++ HRLL A I K ++ RPQ + + R R +MA R + L+ K
Sbjct: 505 MINHRLLKA---IIKGETIA--RPQDEATV-QMAERRRLNRMAERDVADWLYARFLNDKA 558
Query: 353 PTDTE--ARI---------VKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ 401
TDT A I V++ NG + F+P P R D V Q+
Sbjct: 559 GTDTRFAAEIIDVSRGGMRVRLVDNGAVAFIP-----APFLHAVR------DELVCSQEN 607
Query: 402 KIVKMDGNLSYSVLQTVNI 420
V++ G + Y V +++
Sbjct: 608 GTVQIKGEVVYKVTDVIDV 626
>sp|B5XS03|RNB_KLEP3 Exoribonuclease 2 OS=Klebsiella pneumoniae (strain 342) GN=rnb PE=3
SV=1
Length = 644
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 192/439 (43%), Gaps = 56/439 (12%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
L+ + IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R
Sbjct: 220 GKLLLTVAIADPTAWIAEGSKLDKAAKVRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279
Query: 66 LAFSVIWELTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
+ L + I + + + I+S A L+Y + ++ P + + +L
Sbjct: 280 PVLACQMTLAADGTIEDNIEFFAATIESKAKLAYDDVSDWLEGRGSWQPGSDAIAQQITL 339
Query: 125 AKKMRQRRIE---RGALTLAS-AEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV 180
K + QRR E AL + +F + E + LDI R AN++VEE M+AAN+
Sbjct: 340 LKDVCQRRSEWRQTHALVFKDRPDYRFVL-GEKGEVLDIVAEPRRIANRIVEESMIAANI 398
Query: 181 SVAEQILRQ---FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDR 235
A ++LR F + ++ E L LL+T +++D + L L R
Sbjct: 399 CAA-RVLRDKLGFGVYNVHTGFDPANTEQLAALLKTH---DVHVDPTEVLTLEGFCKLRR 454
Query: 236 AVGDDP--YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYAD 293
+ P + + IR Q+ S + P H+GL Y +TSPIR+Y D
Sbjct: 455 ELDAQPTGFLDSRIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGD 504
Query: 294 VVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVE-LHTLIYFRKR 352
++ HRLL A I K ++ RPQ + + R R +MA R + L+ K
Sbjct: 505 MINHRLLKA---IIKGETIA--RPQDDATV-QMAERRRLNRMAERDVADWLYARFLNDKA 558
Query: 353 PTDTE--ARI---------VKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ 401
TDT A I V++ NG + F+P P R D V Q+
Sbjct: 559 GTDTRFAAEILDISRGGMRVRLVDNGAVAFIP-----APFLHAVR------DELVCSQEN 607
Query: 402 KIVKMDGNLSYSVLQTVNI 420
V++ G + Y V +++
Sbjct: 608 GTVQIKGEVVYKVTDVIDV 626
>sp|P56123|RNR_HELPY Ribonuclease R OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnr PE=3 SV=1
Length = 644
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 159/347 (45%), Gaps = 46/347 (13%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
+ADV+ FV + LD EA RG SVY MLP L++ CSL+A +RLA +++E
Sbjct: 247 VADVSEFVPKHSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA--LVYE 304
Query: 74 LTPEAEIISTRYTKSVIKSCAALSYVEAQARM--DDSRLMDPLTTDLRNMNSLAKKMRQR 131
+ P + + R ++ VI+ A +Y E + + S L L L +A K+++
Sbjct: 305 I-PLDNLKNARLSQGVIEVRANCTYEEINHFLSANQSSLDKDLQQSLLGFLEMALKLKKE 363
Query: 132 RIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQFP 191
R+++G S E K ++ E I + +A+ ++EE ML AN S A + F
Sbjct: 364 RLKKG-FNFNSFENKLYLNKEGRIE-KIETEKESDAHTLIEEAMLLANQSSARLLDEHFH 421
Query: 192 LCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSL-------DRAVGDDPYFN 244
+ R H P+ E K L D L + +G P+
Sbjct: 422 NKGIYRTHKEPSLE-------------------QQKRLYDKLFDYEIVRPKNMGFFPFLE 462
Query: 245 KLIRILATRCMTQAV---YFCSGDL---TPPEFHHYGLAAPLYTHFTSPIRRYADVVVHR 298
++I + + + V S +L +P + H+GL YTHFTSPIRRY+D+ +HR
Sbjct: 463 HALKIAKEKSIEREVSRLIIKSQNLALYSPLQESHFGLGFASYTHFTSPIRRYSDLALHR 522
Query: 299 LLSASLGIYKLPS---VFQDRPQLTSIADNLNYRHRNAQMASRGSVE 342
LL L Y+ + ++ P+L + LN + A + R ++
Sbjct: 523 LLK-ELLFYQAKGCSYLLEETPELCA---ELNALQKKAALIERDFIK 565
>sp|B7N4A3|RNB_ECOLU Exoribonuclease 2 OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 181/438 (41%), Gaps = 54/438 (12%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
L + IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R
Sbjct: 220 GKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279
Query: 66 LAFSVIWELTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
+ L+ + I + + + I+S A L Y + ++++ P + + L
Sbjct: 280 PVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL 339
Query: 125 AKKMRQRRIE---RGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
++ QRR E AL I E + LDI R AN++VEE M+AAN+
Sbjct: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANIC 399
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGD 239
A ++LR + H + L GL++D L L R +
Sbjct: 400 AA-RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA 458
Query: 240 DP--YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
P + + IR Q+ S + P H+GL Y +TSPIR+Y D++ H
Sbjct: 459 QPTGFLDSRIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINH 508
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRP 353
RLL A + RPQ I + R R +MA R ++ +Y R K
Sbjct: 509 RLLKAV-----IKGETATRPQ-DEITVQMAERRRLNRMAER---DVGDWLYARFLKDKAG 559
Query: 354 TDTE--ARIVKIR---------SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQK 402
TDT A IV I NG I F+P P R D V Q+
Sbjct: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIP-----APFLHAVR------DELVCSQENG 608
Query: 403 IVKMDGNLSYSVLQTVNI 420
V++ G +Y V +++
Sbjct: 609 TVQIKGETAYKVTDVIDV 626
>sp|Q8FHT6|RNB_ECOL6 Exoribonuclease 2 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 181/438 (41%), Gaps = 54/438 (12%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
L + IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R
Sbjct: 220 GKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279
Query: 66 LAFSVIWELTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
+ L+ + I + + + I+S A L Y + ++++ P + + L
Sbjct: 280 PVLACRMTLSTDGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL 339
Query: 125 AKKMRQRRIE---RGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
++ QRR E AL I E + LDI R AN++VEE M+AAN+
Sbjct: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANIC 399
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGD 239
A ++LR + H + L GL++D L L R +
Sbjct: 400 AA-RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA 458
Query: 240 DP--YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
P + + IR Q+ S + P H+GL Y +TSPIR+Y D++ H
Sbjct: 459 QPTGFLDSRIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINH 508
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRP 353
RLL A + RPQ I + R R +MA R ++ +Y R K
Sbjct: 509 RLLKAV-----IKGETATRPQ-DEITVQMAERRRLNRMAER---DVGDWLYARFLKDKAG 559
Query: 354 TDTE--ARIVKIR---------SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQK 402
TDT A IV I NG I F+P P R D V Q+
Sbjct: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIP-----APFLHAVR------DELVCSQENG 608
Query: 403 IVKMDGNLSYSVLQTVNI 420
V++ G +Y V +++
Sbjct: 609 TVQIKGETAYKVTDVIDV 626
>sp|Q0TI78|RNB_ECOL5 Exoribonuclease 2 OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=rnb PE=3 SV=1
Length = 644
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 120/438 (27%), Positives = 181/438 (41%), Gaps = 54/438 (12%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
L + IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R
Sbjct: 220 GKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279
Query: 66 LAFSVIWELTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
+ L+ + I + + + I+S A L Y + ++++ P + + L
Sbjct: 280 PVLACRMTLSTDGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRL 339
Query: 125 AKKMRQRRIE---RGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVS 181
++ QRR E AL I E + LDI R AN++VEE M+AAN+
Sbjct: 340 LAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANIC 399
Query: 182 VAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGD 239
A ++LR + H + L GL++D L L R +
Sbjct: 400 AA-RVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDA 458
Query: 240 DP--YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVH 297
P + + IR Q+ S + P H+GL Y +TSPIR+Y D++ H
Sbjct: 459 QPTGFLDSRIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINH 508
Query: 298 RLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRP 353
RLL A + RPQ I + R R +MA R ++ +Y R K
Sbjct: 509 RLLKAV-----IKGETATRPQ-DEITVQMAERRRLNRMAER---DVGDWLYARFLKDKAG 559
Query: 354 TDTE--ARIVKIR---------SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQK 402
TDT A IV I NG I F+P P R D V Q+
Sbjct: 560 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIP-----APFLHAVR------DELVCSQENG 608
Query: 403 IVKMDGNLSYSVLQTVNI 420
V++ G +Y V +++
Sbjct: 609 TVQIKGETAYKVTDVIDV 626
>sp|B1LGE7|RNB_ECOSM Exoribonuclease 2 OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=rnb PE=3 SV=1
Length = 644
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 119/430 (27%), Positives = 179/430 (41%), Gaps = 54/430 (12%)
Query: 14 IADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWE 73
IAD T ++ G+ LD A R + YL I MLP+ L++D+CSLRA+ R +
Sbjct: 228 IADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287
Query: 74 LTPEAEI-ISTRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRR 132
L+ + I + + + I+S A L Y + ++++ P + + L ++ QRR
Sbjct: 288 LSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR 347
Query: 133 IE---RGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILRQ 189
E AL I E + LDI R AN++VEE M+AAN+ A ++LR
Sbjct: 348 GEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICAA-RVLRD 406
Query: 190 FPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALAD--SLDRAVGDDP--YFNK 245
+ H + L GL++D L L R + P + +
Sbjct: 407 KLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDS 466
Query: 246 LIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLG 305
IR Q+ S + P H+GL Y +TSPIR+Y D++ HRLL A
Sbjct: 467 RIRRF------QSFAEISTEPGP----HFGLGLEAYATWTSPIRKYGDMINHRLLKAV-- 514
Query: 306 IYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR----KRPTDTE--AR 359
+ RPQ I + R R +MA R ++ +Y R K TDT A
Sbjct: 515 ---IKGETATRPQ-DEITVQMAERRRLNRMAER---DVGDWLYARFLKDKAGTDTRFAAE 567
Query: 360 IVKIR---------SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNL 410
IV I NG I F+P P R D V Q+ V++ G
Sbjct: 568 IVDISRGGMRVRLVDNGAIAFIP-----APFLHAVR------DELVCSQENGTVQIKGET 616
Query: 411 SYSVLQTVNI 420
+Y V +++
Sbjct: 617 AYKVTDVIDV 626
>sp|Q2NST6|RNB_SODGM Exoribonuclease 2 OS=Sodalis glossinidius (strain morsitans) GN=rnb
PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/397 (27%), Positives = 174/397 (43%), Gaps = 55/397 (13%)
Query: 6 SSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVER 65
+ + + IAD T +V G+PLD+ A +R + YL I MLP+ L++D+CSLRA R
Sbjct: 221 GAWVMTVAIADPTAWVPAGSPLDNIARERAFTNYLPGFNIPMLPRALSDDLCSLRAHERR 280
Query: 66 LAFSVIWELTPEAEII-STRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSL 124
A + + P + R+ + I+S L+Y +++ P T + + L
Sbjct: 281 PALACRVTVRPNGTLADDARFFTAWIESKGKLAYDNVSDWLENLGSWQPETEAIADQIRL 340
Query: 125 AKKM---RQRRIERGALTLAS-AEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANV 180
+ R +R AL + +F ++ E + DI + R AN+M+EE M+ ANV
Sbjct: 341 LHDVCLARSAWRQRHALVFKDRPDYRFVLN-EKGNVDDIVVEPRRIANRMIEEAMITANV 399
Query: 181 SVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLN---LDVSSSKALA----DSL 233
A ++LR L H +PLL A L+ ++V + L +L
Sbjct: 400 CAA-RVLRDGLGYGLYNVH-----HGFDPLLVDQAVAILHSHQIEVDPADLLTLEGFCAL 453
Query: 234 DRAVGDDP--YFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRY 291
R + P Y + IR T F P H+GL Y +TSPIR+Y
Sbjct: 454 RRRLDAQPTSYLDSRIRRFQT--------FAEVSTVPGP--HFGLGLDAYATWTSPIRKY 503
Query: 292 ADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFR- 350
D++ HRLL A +G+ +RP + L R R +MA R ++ +Y R
Sbjct: 504 GDMINHRLLKALIGVGD-----AERPN-EEVTLRLAERRRQNRMAER---DVGDWLYARF 554
Query: 351 ---KRPTDTE--ARIVKIR---------SNGFIVFVP 373
K +D+ A I+ I +NG + F+P
Sbjct: 555 LQPKAGSDSRFAAEIIDISRGGMRVRLLNNGAVAFIP 591
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,562,057
Number of Sequences: 539616
Number of extensions: 6209313
Number of successful extensions: 13854
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 13390
Number of HSP's gapped (non-prelim): 165
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)