Query 013634
Match_columns 439
No_of_seqs 217 out of 1631
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vnu_D Exosome complex exonucl 100.0 1E-103 4E-108 853.3 46.8 433 3-438 318-759 (760)
2 2wp8_J Exosome complex exonucl 100.0 2E-102 8E-107 855.5 42.9 433 3-438 535-976 (977)
3 2id0_A Exoribonuclease 2; RNAs 100.0 6.4E-98 2E-102 795.9 44.4 417 2-439 216-643 (644)
4 2r7d_A Ribonuclease II family 100.0 5.2E-88 1.8E-92 693.3 38.9 351 3-438 109-460 (469)
5 1luz_A Protein K3, protein K2; 98.9 3.6E-10 1.2E-14 89.0 3.0 73 348-438 6-81 (88)
6 1kl9_A Eukaryotic translation 98.8 6.6E-09 2.3E-13 92.9 6.9 77 346-438 5-86 (182)
7 2k52_A Uncharacterized protein 98.8 1.8E-08 6.3E-13 77.8 7.9 64 354-438 7-70 (80)
8 2a19_A EIF-2- alpha, eukaryoti 98.8 8.6E-09 2.9E-13 91.6 6.5 77 346-438 5-86 (175)
9 2ckz_B C25, DNA-directed RNA p 98.7 9E-09 3.1E-13 94.7 6.1 81 345-429 73-157 (218)
10 4ayb_E DNA-directed RNA polyme 98.7 2.8E-08 9.6E-13 89.0 8.9 80 354-438 83-164 (180)
11 1go3_E DNA-directed RNA polyme 98.7 6.3E-08 2.2E-12 87.3 10.5 80 354-438 83-165 (187)
12 2k4k_A GSP13, general stress p 98.7 4E-08 1.4E-12 83.1 7.9 68 354-438 9-76 (130)
13 2c35_B Human RPB7, DNA-directe 98.6 9.3E-08 3.2E-12 85.0 9.5 75 348-428 76-153 (172)
14 2khi_A 30S ribosomal protein S 98.6 3.5E-08 1.2E-12 81.7 5.7 69 354-438 32-100 (115)
15 2cqo_A Nucleolar protein of 40 98.6 1.9E-08 6.7E-13 83.7 4.0 71 354-438 24-94 (119)
16 3bzc_A TEX; helix-turn-helix, 98.6 1.8E-08 6.2E-13 108.4 4.3 167 203-438 547-723 (785)
17 2eqs_A ATP-dependent RNA helic 98.6 5E-08 1.7E-12 79.1 5.6 68 354-438 14-83 (103)
18 2b8k_G B16, DNA-directed RNA p 98.5 2.5E-07 8.5E-12 84.8 7.8 73 348-428 78-153 (215)
19 2khj_A 30S ribosomal protein S 98.5 1.1E-07 3.9E-12 77.9 5.0 68 354-438 33-100 (109)
20 3aev_A Translation initiation 98.5 2.6E-07 8.8E-12 87.9 8.1 75 348-438 4-82 (275)
21 3ayh_B DNA-directed RNA polyme 98.5 8.1E-08 2.8E-12 87.6 4.4 79 345-428 73-160 (203)
22 1y14_B B16, RPB7, DNA-directed 98.5 5E-07 1.7E-11 80.1 9.0 72 349-428 79-153 (171)
23 1q8k_A Eukaryotic translation 98.4 1.9E-07 6.6E-12 90.0 5.2 77 346-438 3-84 (308)
24 3h0g_G DNA-directed RNA polyme 98.2 4.4E-07 1.5E-11 80.5 3.4 73 348-428 79-154 (172)
25 1wi5_A RRP5 protein homolog; S 98.2 5.5E-07 1.9E-11 74.9 3.7 70 354-438 23-92 (119)
26 3cw2_C Translation initiation 98.0 1.4E-06 4.9E-11 82.4 2.3 69 354-438 13-82 (266)
27 3go5_A Multidomain protein wit 97.9 2.6E-05 9E-10 74.5 7.6 60 354-438 154-214 (285)
28 3psi_A Transcription elongatio 97.8 1E-05 3.5E-10 90.8 5.1 69 354-438 904-972 (1219)
29 4aid_A Polyribonucleotide nucl 97.8 3.2E-06 1.1E-10 90.1 1.0 67 354-438 639-705 (726)
30 3psf_A Transcription elongatio 97.6 6.7E-06 2.3E-10 90.8 0.0 69 354-438 907-975 (1030)
31 3cdi_A Polynucleotide phosphor 97.6 8.3E-06 2.8E-10 87.3 0.0 67 354-438 629-695 (723)
32 1e3p_A Guanosine pentaphosphat 97.4 9.5E-06 3.2E-10 87.2 -3.7 137 278-438 596-739 (757)
33 3m7n_A Putative uncharacterize 97.1 0.0008 2.7E-08 59.7 6.6 65 353-438 58-131 (179)
34 2nn6_I 3'-5' exoribonuclease C 96.9 0.00093 3.2E-08 60.8 5.6 71 354-438 83-160 (209)
35 1hh2_P NUSA, N utilization sub 96.3 0.0026 8.9E-08 61.9 4.3 62 354-437 136-197 (344)
36 2je6_I RRP4, exosome complex R 96.0 0.0049 1.7E-07 57.6 4.4 70 354-438 76-145 (251)
37 2ba0_A Archeal exosome RNA bin 95.9 0.012 4.1E-07 54.1 6.7 68 354-438 59-126 (229)
38 2z0s_A Probable exosome comple 95.9 0.0061 2.1E-07 56.4 4.4 71 354-438 68-138 (235)
39 3go5_A Multidomain protein wit 95.4 0.027 9.2E-07 53.6 6.9 62 354-438 71-134 (285)
40 1k0r_A NUSA; two component arr 95.1 0.028 9.7E-07 54.9 6.3 65 353-437 131-201 (366)
41 2asb_A Transcription elongatio 93.7 0.11 3.8E-06 47.9 6.5 65 353-437 8-78 (251)
42 2bx2_L Ribonuclease E, RNAse E 92.8 0.17 5.8E-06 51.9 6.9 68 354-427 47-116 (517)
43 2ja9_A Exosome complex exonucl 91.7 0.44 1.5E-05 41.7 7.4 66 354-437 9-74 (175)
44 2bh8_A 1B11; transcription, mo 91.6 0.066 2.3E-06 42.5 1.8 34 354-388 63-96 (101)
45 2nn6_H Exosome complex exonucl 85.2 0.47 1.6E-05 45.3 3.2 76 354-437 97-172 (308)
46 2rf4_A DNA-directed RNA polyme 76.0 6.2 0.00021 35.4 7.1 67 354-428 131-202 (214)
47 2bh8_A 1B11; transcription, mo 75.3 6 0.00021 30.9 6.0 56 354-426 15-73 (101)
48 3i4o_A Translation initiation 75.2 2.1 7E-05 32.2 3.0 63 354-437 14-77 (79)
49 3d0f_A Penicillin-binding 1 tr 65.3 9.4 0.00032 29.9 5.1 58 354-421 35-93 (106)
50 2jpp_A Translational repressor 57.1 16 0.00056 26.4 4.6 28 406-437 6-33 (70)
51 2dgy_A MGC11102 protein; EIF-1 55.1 19 0.00065 28.7 5.2 62 354-436 15-77 (111)
52 2nn6_G Exosome complex exonucl 54.6 19 0.00066 33.8 6.0 58 354-427 129-186 (289)
53 2bti_A Carbon storage regulato 54.2 25 0.00086 24.9 5.1 29 405-437 7-35 (63)
54 1d7q_A Translation initiation 54.0 20 0.00068 29.9 5.3 62 354-437 31-93 (143)
55 1vpz_A Carbon storage regulato 50.5 24 0.00082 25.8 4.6 29 405-437 17-45 (73)
56 3mqp_B Phorbol-12-myristate-13 48.0 6.4 0.00022 21.9 0.9 13 287-299 10-22 (25)
57 1u07_A TONB protein; beta-hair 45.7 26 0.00088 26.3 4.5 23 67-89 26-48 (90)
58 1mhn_A SurviVal motor neuron p 44.6 54 0.0019 22.5 5.7 34 354-387 19-54 (59)
59 2jm6_A NOXA; apoptosis, BCL-2, 41.7 9.1 0.00031 21.7 0.9 13 287-299 10-22 (27)
60 2k9k_A TONB2; metal transport; 38.3 32 0.0011 26.6 4.1 22 67-88 41-62 (106)
61 1wfq_A UNR protein; beta-barre 35.5 90 0.0031 23.5 6.1 34 354-388 17-51 (89)
62 1t3o_A Carbon storage regulato 34.7 25 0.00084 27.1 2.7 30 404-437 25-54 (95)
63 2yty_A Cold shock domain-conta 32.6 47 0.0016 25.1 4.0 51 354-423 17-67 (88)
64 4a4f_A SurviVal of motor neuro 32.3 90 0.0031 21.8 5.3 34 354-387 24-59 (64)
65 3s6w_A Tudor domain-containing 32.0 65 0.0022 21.5 4.3 33 354-386 17-51 (54)
66 3h8z_A FragIle X mental retard 31.6 52 0.0018 26.8 4.4 55 354-422 16-71 (128)
67 1c9o_A CSPB, cold-shock protei 30.9 1.4E+02 0.0047 20.9 6.7 51 357-425 3-54 (66)
68 1jt8_A EIF-1A, probable transl 30.6 9.7 0.00033 29.9 -0.2 62 354-436 20-82 (102)
69 1ah9_A IF1, initiation factor 30.5 45 0.0015 24.0 3.4 50 355-423 7-57 (71)
70 2d9t_A Tudor domain-containing 28.5 92 0.0031 22.7 5.0 34 354-387 25-60 (78)
71 1g5v_A SurviVal motor neuron p 28.4 1.1E+02 0.0038 23.0 5.5 35 354-388 26-62 (88)
72 1lr0_A TOLA protein; domain-sw 27.2 52 0.0018 26.7 3.7 20 67-86 53-72 (129)
73 3fdr_A Tudor and KH domain-con 25.5 85 0.0029 23.6 4.5 34 354-387 43-77 (94)
74 3pnw_C Tudor domain-containing 25.0 1E+02 0.0035 22.5 4.6 35 354-388 33-69 (77)
75 3a0j_A Cold shock protein; OB- 24.8 1.5E+02 0.0051 21.2 5.5 33 357-389 3-36 (73)
76 2qcp_X Cation efflux system pr 21.2 1.2E+02 0.0042 22.2 4.4 17 410-426 52-68 (80)
77 3i2z_B RNA chaperone, negative 20.9 2.3E+02 0.0078 20.1 6.3 54 355-426 5-60 (71)
78 2vb2_X Copper protein, cation 20.7 1.2E+02 0.0043 22.6 4.4 17 410-426 60-76 (88)
No 1
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=1.1e-103 Score=853.33 Aligned_cols=433 Identities=45% Similarity=0.712 Sum_probs=399.8
Q ss_pred ccCCeEEEEEEEecCCcccCCCCHhhHHHHhcCceEEcCCCcccCCCccccccccCCCCCCceeEEEEEEEECCCCceeE
Q 013634 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIIS 82 (439)
Q Consensus 3 ~~~g~~~v~VHIADvs~~v~~~s~ld~eA~~R~~svYlp~~~~pMLP~~Ls~~~~SL~~~~~r~a~s~~~~l~~~G~i~~ 82 (439)
+++|+|+|||||||||+||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|++
T Consensus 318 ~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~ 397 (760)
T 2vnu_D 318 LPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVN 397 (760)
T ss_dssp CTTSCEEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEE
T ss_pred cCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccCCCCcEEEEEEEEEEcCCCCEEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeEEecCceecHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCceeecCcceEEEecCCCCCeeeeEee
Q 013634 83 TRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162 (439)
Q Consensus 83 ~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~Gal~~~~~~~~~~~d~~~~~~~~v~~~ 162 (439)
++|++|+|+|+++|||++|+++|+++...+++.++|..|+++|+.|+++|.++|+++|+.|+++|.+|++.|.|.++.+.
T Consensus 398 ~~~~~svI~s~~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ld~e~g~~~~i~~~ 477 (760)
T 2vnu_D 398 VNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIK 477 (760)
T ss_dssp EEEEEEEEEBSEEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEEEEC
T ss_pred EEEEEEEEEecceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEEEecCCCcEEEEEEc
Confidence 99999999999999999999999987767788899999999999999999999999999999999999666889999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCCCCChhhHHHHHHHHHHc-CCcccCCCHHHHHHHHHHHhC-CC
Q 013634 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAV-GLNLDVSSSKALADSLDRAVG-DD 240 (439)
Q Consensus 163 ~~~~a~~lVeE~MilAN~~vA~~~~~~~~~~~~~R~h~~p~~~~~~~l~~~~~~~-g~~~~~~~~~~l~~~l~~~~~-~~ 240 (439)
+..+||.|||||||+||.+||+|+.++++.|++||+|+.|++++++.|.+++..+ |+.++..++++++++|+.+.+ .+
T Consensus 478 ~~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~~~~~~l~~~l~~~~~~~~ 557 (760)
T 2vnu_D 478 KLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPED 557 (760)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTB
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHhhCCch
Confidence 9999999999999999999999999988899999999999999999999999999 999998899999999997654 56
Q ss_pred hhHHHHHHHHHHhhccCceecccCCCCCCCcCcccccccccccccccccchhhHHHHHHHHHHhCCCCCCCCCCChhHHH
Q 013634 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLT 320 (439)
Q Consensus 241 ~~~~~~l~~~~~r~m~~a~Y~~~~~~~~~~~~H~~Lg~~~YthfTSPiRRY~DlvvHrqL~~~l~~~~~~~~~~~~~~l~ 320 (439)
+.+..+++.+++|+|++|+|+++|+.+.++.+|||||++.|||||||||||+||+|||||+++|.+++.+...++.+.|.
T Consensus 558 ~~~~~ll~~~~~r~m~~A~Y~~~g~~~~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L~~~l~~~~~~~~~~~~~~l~ 637 (760)
T 2vnu_D 558 PYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMD 637 (760)
T ss_dssp TTHHHHHHHHHHTTSCCCEEEEGGGSCGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHhhhCccccccCcCCCCCCCceecCCCceeccCchHhhhHHHHHHHHHHHHHccCCCcccccCHHHHH
Confidence 67778889899999999999999988889999999999999999999999999999999999998776655555678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCC--CCCCCceeecC
Q 013634 321 SIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRG--QKGSGDWYVDE 398 (439)
Q Consensus 321 ~~~~~~n~~~~~a~~~~r~~~~~~~~~~l~~~~~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~--~~~~~~~~~d~ 398 (439)
.+|.+||.+++.|+.|+|++.++|.|.||+++.+.++|+|++|.++|++|+||++|+||+||++++. ++ +|.+++
T Consensus 638 ~~~~~~s~~er~A~~aer~~~~~~~~~~l~~~~~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d---~~~fd~ 714 (760)
T 2vnu_D 638 MICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPN---SAAFDE 714 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGG---GCEEET
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCc---eeEEcc
Confidence 9999999999999999999999999999999888999999999999999999999999999999996 55 789999
Q ss_pred CeEEEEeeCC----ceEEeeCceEEEEEEEecCCCC-CCceeEEe
Q 013634 399 QQQKIVKMDG----NLSYSVLQTVNIHMEVVEPQPN-RPKLQLTL 438 (439)
Q Consensus 399 ~~~~l~~~~~----~~~~~iGd~V~V~v~~vd~~~~-~~~i~l~l 438 (439)
.+.+++++++ ++.|++||+|+|+|.++|.+.+ ++||.|+|
T Consensus 715 ~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~lsl 759 (760)
T 2vnu_D 715 VEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLL 759 (760)
T ss_dssp TTTEEEECCTTCSSCEEEETTCEEEEEEC--------CCEEEC--
T ss_pred cccEEEEecCCCccCcEEecCCEEEEEEEEEECccccCCcEEEEe
Confidence 9899988764 6999999999999999997543 48999986
No 2
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-102 Score=855.52 Aligned_cols=433 Identities=45% Similarity=0.712 Sum_probs=406.9
Q ss_pred ccCCeEEEEEEEecCCcccCCCCHhhHHHHhcCceEEcCCCcccCCCccccccccCCCCCCceeEEEEEEEECCCCceeE
Q 013634 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIIS 82 (439)
Q Consensus 3 ~~~g~~~v~VHIADvs~~v~~~s~ld~eA~~R~~svYlp~~~~pMLP~~Ls~~~~SL~~~~~r~a~s~~~~l~~~G~i~~ 82 (439)
+++|+|+|||||||||+||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|++
T Consensus 535 ~~~G~~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~~LS~~lcSL~pg~dRla~Sv~~~id~~G~i~~ 614 (977)
T 2wp8_J 535 LPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVN 614 (977)
T ss_dssp CTTSCEEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTSCEEE
T ss_pred cCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEeCCCceEeCCChHHhccccccCCCCceEEEEEEEEECCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeEEecCceecHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCceeecCcceEEEecCCCCCeeeeEee
Q 013634 83 TRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162 (439)
Q Consensus 83 ~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~Gal~~~~~~~~~~~d~~~~~~~~v~~~ 162 (439)
++|++|+|+|+++|||++|+++|+++...+++.++|..|+++|++|+++|.++|+++|+.|+.+|.+|++.|.|.++.+.
T Consensus 615 ~~~~~svIrs~~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~Lr~~R~~~Gai~~~~pE~~~~ld~e~g~~~~i~~~ 694 (977)
T 2wp8_J 615 VNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIK 694 (977)
T ss_dssp EEEEEEEEEBSEEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSHHHHTTSCCTTCCCCCSSCC
T ss_pred EEEEEEEEEecceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEEeccCCCceEEEEec
Confidence 99999999999999999999999987767788999999999999999999999999999999999998556889888888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCCCCChhhHHHHHHHHHHc-CCcccCCCHHHHHHHHHHHhC-CC
Q 013634 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAV-GLNLDVSSSKALADSLDRAVG-DD 240 (439)
Q Consensus 163 ~~~~a~~lVeE~MilAN~~vA~~~~~~~~~~~~~R~h~~p~~~~~~~l~~~~~~~-g~~~~~~~~~~l~~~l~~~~~-~~ 240 (439)
+..+||.|||||||+||.+||+|+.++++.|++||+|+.|++++++.|.+++..+ |++++..++++++++|+++.+ .+
T Consensus 695 ~~~~a~~LIEE~MllAN~~vA~~l~~~~~~~~lyR~h~~P~~~kl~~l~~~~~~~~G~~l~~~~~~~l~~~L~~~~~~~~ 774 (977)
T 2wp8_J 695 KLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPED 774 (977)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSSHHHHHHHHHHCCCSSC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHhhCCch
Confidence 8999999999999999999999999988899999999999999999999999999 999998899999999998765 56
Q ss_pred hhHHHHHHHHHHhhccCceecccCCCCCCCcCcccccccccccccccccchhhHHHHHHHHHHhCCCCCCCCCCChhHHH
Q 013634 241 PYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLT 320 (439)
Q Consensus 241 ~~~~~~l~~~~~r~m~~a~Y~~~~~~~~~~~~H~~Lg~~~YthfTSPiRRY~DlvvHrqL~~~l~~~~~~~~~~~~~~l~ 320 (439)
+.+..+++.+++|+|++|+|+++|+.+.++.+|||||++.|||||||||||+||+|||||+++|.+++.+....+.+.|+
T Consensus 775 ~~~~~ll~~~~lrsm~~A~Y~~sg~~s~~~~gHfgLa~~~YtHfTSPIRRY~DLivHR~L~a~L~~~~~~~~~~~~~~l~ 854 (977)
T 2wp8_J 775 PYFNTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHRDKNKMD 854 (977)
T ss_dssp TTHHHHHHHHHHTTSCCCEEEEGGGSCGGGSCBTTTTBSSCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHhccCceeecccccCCCCCCceecCCCCeeccCchHhhHHHHHHHHHHHHHhcCCCCcccccCHHHHH
Confidence 77778889889999999999999998889999999999999999999999999999999999998776554556678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCC--CCCCCceeecC
Q 013634 321 SIADNLNYRHRNAQMASRGSVELHTLIYFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRG--QKGSGDWYVDE 398 (439)
Q Consensus 321 ~~~~~~n~~~~~a~~~~r~~~~~~~~~~l~~~~~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~--~~~~~~~~~d~ 398 (439)
.+|.+||.+++.|++|+|++.++|.+.||+.+.+.|+|+|++|.++|+||+||++|+||+||++++. ++ +|.+|+
T Consensus 855 ~i~~~~s~~er~A~~aeR~~~~~~~~~~l~~~ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d---~y~fde 931 (977)
T 2wp8_J 855 MICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPN---SAAFDE 931 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGG---GCEEET
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHhhhhcccceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCc---eeEEcc
Confidence 9999999999999999999999999999998888999999999999999999999999999999997 55 789999
Q ss_pred CeEEEEeeC----CceEEeeCceEEEEEEEecCCCC-CCceeEEe
Q 013634 399 QQQKIVKMD----GNLSYSVLQTVNIHMEVVEPQPN-RPKLQLTL 438 (439)
Q Consensus 399 ~~~~l~~~~----~~~~~~iGd~V~V~v~~vd~~~~-~~~i~l~l 438 (439)
.+.+++|++ .++.|++||+|+|+|.+++...+ ++||.|+|
T Consensus 932 ~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~~~~~kI~Lsl 976 (977)
T 2wp8_J 932 VEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLL 976 (977)
T ss_dssp TTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSSSCCCCCCEEE
T ss_pred cccEEEeecCCCccCcEEccCCEEEEEEEEEcCcccCCCceEEEe
Confidence 999999886 36999999999999999997544 48999987
No 3
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=6.4e-98 Score=795.90 Aligned_cols=417 Identities=22% Similarity=0.295 Sum_probs=373.0
Q ss_pred cccCCeEEEEEEEecCCcccCCCCHhhHHHHhcCceEEcCCCcccCCCccccccccCCCCCCceeEEEEEEEECCCCcee
Q 013634 2 KLQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEII 81 (439)
Q Consensus 2 ~~~~g~~~v~VHIADvs~~v~~~s~ld~eA~~R~~svYlp~~~~pMLP~~Ls~~~~SL~~~~~r~a~s~~~~l~~~G~i~ 81 (439)
++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|+
T Consensus 216 ~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~~~iPMLP~~Ls~~lcSL~p~~dR~a~s~~~~id~~G~v~ 295 (644)
T 2id0_A 216 ALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIE 295 (644)
T ss_dssp CCSSSCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCCSSCEEEEEEEEEEECSSCCCS
T ss_pred EcCCCCEEEEEEeccHHHeeCCCCHHHHHHHHhCCcEeCCCEEEeCCCHHHhcCcccCCCCCceEEEEEEEEEeCCCCEe
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E-EEEEEeEEecCceecHHHHHHHhcCCCC----CCchHHHHHHHHHHHHHHHHHHHhCCceeecCcceEEEecCCCCCe
Q 013634 82 S-TRYTKSVIKSCAALSYVEAQARMDDSRL----MDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDP 156 (439)
Q Consensus 82 ~-~~~~~s~I~s~~~ltY~~v~~~l~~~~~----~~~~~~~l~~L~~~a~~l~~~R~~~Gal~~~~~~~~~~~d~~~~~~ 156 (439)
+ ++|++|+|+|+++|||++|+++|+++.. .+++.++|..|+++|++|+++|.++|+++++.|+.+|.+|++ |.|
T Consensus 296 ~~~~~~~svI~s~~rltY~~v~~~l~~~~~~~~~~~~~~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ld~~-g~~ 374 (644)
T 2id0_A 296 DNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEK-GEV 374 (644)
T ss_dssp TTCCEEEEEEECCCEEEHHHHHHHTTCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCEEEEECTT-SCE
T ss_pred eccEEEEEEEEeccccCHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCceEEEECCC-CCE
Confidence 8 9999999999999999999999987531 235788999999999999999999999999999999999865 789
Q ss_pred eeeEeeccchHHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCCCCChhhHHHHHHHHHHcCCcccCC---CHHHHHHHH
Q 013634 157 LDIGMYQIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVS---SSKALADSL 233 (439)
Q Consensus 157 ~~v~~~~~~~a~~lVeE~MilAN~~vA~~~~~~~~~~~~~R~h~~p~~~~~~~l~~~~~~~g~~~~~~---~~~~l~~~l 233 (439)
.++.+....+||.|||||||+||.+||+|+.++ ..|++||+|+.|++++++.+.+++..+|++++.+ ++..+++.+
T Consensus 375 ~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~-~~~~lyR~h~~p~~~~l~~l~~~~~~~g~~l~~~~~~~~~~~~~l~ 453 (644)
T 2id0_A 375 LDIVAEPRRIANRIVEEAMIAANICAARVLRDK-LGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLR 453 (644)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCEEEBCCBCTTTHHHHHHHHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHc-CCCceeecCCCCCHHHHHHHHHHHHHcCCCCCCCcccCHHHHHHHH
Confidence 999998999999999999999999999999998 6899999999999999999999999999988643 334566666
Q ss_pred HHHhCCChhHHHHHHHHHHhhccCceecccCCCCCCCcCcccccccccccccccccchhhHHHHHHHHHHhCCCCCCCCC
Q 013634 234 DRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVF 313 (439)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~r~m~~a~Y~~~~~~~~~~~~H~~Lg~~~YthfTSPiRRY~DlvvHrqL~~~l~~~~~~~~~ 313 (439)
+.+.+ .+.. +++.+++|+|++|.| +++|.+|||||++.|||||||||||+||+|||||+++|.+++.+..
T Consensus 454 ~~~~~-~~~~--~l~~~l~r~~~~a~y------s~~~~~HfgLa~~~YthfTSPIRRY~DLivHR~l~a~l~~~~~~~~- 523 (644)
T 2id0_A 454 RELDA-QPTG--FLDSRIRRFQSFAEI------STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETATRP- 523 (644)
T ss_dssp HHHHT-SSSS--HHHHHHTTSBCCCEE------ESSCCCBTTTTBSSCBCCSCTTTBHHHHHHHHHHHHHTTC----CC-
T ss_pred HHhcC-ChHH--HHHHHHHHhcccccc------cCCCCCchhcCCCceeeeCChhhcchHHHHHHHHHHHHcCCCCCcc-
Confidence 66654 2221 566678999999999 6788999999999999999999999999999999999987754321
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-e--EEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCC
Q 013634 314 QDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-T--DTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKG 390 (439)
Q Consensus 314 ~~~~~l~~~~~~~n~~~~~a~~~~r~~~~~~~~~~l~~~~-~--~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~ 390 (439)
.+.+|.+||.+++.+++|+|++.++|.|.||+.+. + .|+|+|++|.++|+||+|+++|+||+||++++.+.
T Consensus 524 -----~~~~~~~~s~~er~a~~aer~~~~~~~~~~l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~- 597 (644)
T 2id0_A 524 -----QDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAV- 597 (644)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSC-
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCc-
Confidence 24678899999999999999999999999999887 5 89999999999999999999999999999999741
Q ss_pred CCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCceeEEeC
Q 013634 391 SGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTLI 439 (439)
Q Consensus 391 ~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~i~l~l~ 439 (439)
+.||.+++...++.. ++++.|++||+|+|+|.+||.. +++|.|+++
T Consensus 598 ~d~~~~d~~~~~l~~-~~~~~~~lGD~V~VkV~~vd~~--~~~I~~~l~ 643 (644)
T 2id0_A 598 RDELVCSQENGTVQI-KGETVYKVTDVIDVTIAEVRME--TRSIIARPV 643 (644)
T ss_dssp GGGEEEETTTTEEEE-TTEEEEETTCEEEEEEEEEETT--TTEEEEEEC
T ss_pred CceeEEcccccEEEe-cCCCEeCCCCEEEEEEEEEeCC--CCEEEEEEc
Confidence 127889887777643 6788999999999999999976 899999985
No 4
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=5.2e-88 Score=693.34 Aligned_cols=351 Identities=24% Similarity=0.293 Sum_probs=311.9
Q ss_pred ccCCeEEEEEEEecCCcccCCCCHhhHHHHhcCceEEcCCCcccCCCccccccccCCCCCCceeEEEEEEEECCCCceeE
Q 013634 3 LQYSSLMFQLDIADVTNFVHPGTPLDDEASKRGTSVYLVERRIDMLPKPLTEDICSLRADVERLAFSVIWELTPEAEIIS 82 (439)
Q Consensus 3 ~~~g~~~v~VHIADvs~~v~~~s~ld~eA~~R~~svYlp~~~~pMLP~~Ls~~~~SL~~~~~r~a~s~~~~l~~~G~i~~ 82 (439)
++||+|+|||||||||+||+|||+||+||++||||||||++++||||+.| +++|||+||++|+||||.|++|++|+|++
T Consensus 109 ~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L-~~~cSL~pg~dr~als~~~~id~~G~i~~ 187 (469)
T 2r7d_A 109 LGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKAGLGLHEVSPALSICLDLDPDGNAEA 187 (469)
T ss_dssp CSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH-HHHHSTTSSSSEEEEEEEEEECTTSCEEE
T ss_pred eCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH-hcccCCCCCCceEEEEEEEEEcCCCCEee
Confidence 57889999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred EEEEEeEEecCceecHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCceeecCcceEEEecCCCCCeeeeEee
Q 013634 83 TRYTKSVIKSCAALSYVEAQARMDDSRLMDPLTTDLRNMNSLAKKMRQRRIERGALTLASAEVKFQIDTETHDPLDIGMY 162 (439)
Q Consensus 83 ~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~l~~L~~~a~~l~~~R~~~Gal~~~~~~~~~~~d~~~~~~~~v~~~ 162 (439)
++|++|+|+|+ +|||++|+++|+++. ++|..|+++|+.|+++|.++|+++|+.|+.+|.+|++ +..+.+.
T Consensus 188 ~~~~~svI~s~-rltY~~v~~~l~~~~------~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~i~~d~~---~~~i~~~ 257 (469)
T 2r7d_A 188 VDVLLTRVKVQ-RLAYQEAQARLEAGE------EPFVTLARLARASRRLREGEGALSIDLPEVRVKADET---GASVFPL 257 (469)
T ss_dssp EEEEEEEECEE-EEEHHHHHHHHHTTC------TTHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEETT---EEEEEEC
T ss_pred eEEEEEEEEec-cccHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHhCCCcccCCCceEEEECCC---cceEEec
Confidence 99999999999 999999999999752 4799999999999999999999999999999999864 6778888
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCCCCChhhHHHHHHHHHHcCCcccCCCHHHHHHHHHHHhCCChh
Q 013634 163 QIREANQMVEEFMLAANVSVAEQILRQFPLCSLLRRHPSPTKEMLEPLLRTAAAVGLNLDVSSSKALADSLDRAVGDDPY 242 (439)
Q Consensus 163 ~~~~a~~lVeE~MilAN~~vA~~~~~~~~~~~~~R~h~~p~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~~~~~~~ 242 (439)
+.++|+.|||||||+||.+||+|+.++ ++|++||+|+.|+.+++ . ...
T Consensus 258 ~~~~a~~lIeE~MilAN~~vA~~l~~~-~ip~~yR~h~~p~~~~~---------------~---------------~~~- 305 (469)
T 2r7d_A 258 PKPEMRTVVQECMTLAGWGTAIFADDN-EIPLPFATQDYPTREVA---------------G---------------DTL- 305 (469)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCEEEECCCSSCCC---------------C---------------CSH-
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHc-CCCeeEeeCCCCCcccC---------------c---------------chH-
Confidence 899999999999999999999999997 89999999999986643 0 011
Q ss_pred HHHHHHHHHHhhccCceecccCCCCCCCcCcccccccccccccccccchhhHHHHHHHHHHhCCCCCCCCCCChhHHHHH
Q 013634 243 FNKLIRILATRCMTQAVYFCSGDLTPPEFHHYGLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSI 322 (439)
Q Consensus 243 ~~~~l~~~~~r~m~~a~Y~~~~~~~~~~~~H~~Lg~~~YthfTSPiRRY~DlvvHrqL~~~l~~~~~~~~~~~~~~l~~~ 322 (439)
++..+++|+|++|+| ++.|.+|||||++.|||||||||||+||+|||||+++|.+++ .++.++|+.+
T Consensus 306 ---~~~~~l~r~m~~a~y------~~~~~~HfgL~~~~YthfTSPIRRY~DLivHr~L~a~l~~~~----~~~~~~l~~~ 372 (469)
T 2r7d_A 306 ---PAMWARRKTLARTRF------QPSPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRD----PLSSKVMAAH 372 (469)
T ss_dssp ---HHHHHHHHHCCCEEE------ESSCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCC----CCCHHHHHHH
T ss_pred ---HHHHHHHHhcccccc------cCCCCCchhhCccceeeECCcccccHHHHHHHHHHHHHcCCC----CCCHHHHHHH
Confidence 234457899999999 567899999999999999999999999999999999998762 2356889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeE
Q 013634 323 ADNLNYRHRNAQMASRGSVELHTLIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ 401 (439)
Q Consensus 323 ~~~~n~~~~~a~~~~r~~~~~~~~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~ 401 (439)
|.+||.+++.++++||++.++|.+.||+++. +.|+|+|+.+.+. +|.|+++++..+ .
T Consensus 373 ~~~~~~~er~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~l~~~-----------~glV~v~~l~~d-----------~ 430 (469)
T 2r7d_A 373 IAESQMNADATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRRGA-----------QATLLIPDLAFD-----------V 430 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEETT-----------EEEEEEGGGTEE-----------E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEEeCc-----------EEEEEECCCCeE-----------E
Confidence 9999999999999999999999999999877 7899999776544 455555544321 0
Q ss_pred EEEeeCCceEEeeCceEEEEEEEecCCCCCCceeEEe
Q 013634 402 KIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLTL 438 (439)
Q Consensus 402 ~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~i~l~l 438 (439)
+.++.|++||+|+|+|.+||.. +++|.|+.
T Consensus 431 -----~~~~~~~lGd~V~V~v~~vd~~--~~~i~f~~ 460 (469)
T 2r7d_A 431 -----QVNTPAAPGTALQVQFADIDLP--QMRVRARS 460 (469)
T ss_dssp -----EEECCCCTTCEEEEEEEEEETT--TTEEEEEE
T ss_pred -----ecCCcCCCCCEEEEEEEEEccC--CCEEEEEE
Confidence 1135799999999999999976 89999875
No 5
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=98.92 E-value=3.6e-10 Score=89.03 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHhcCC-eEEEEEEEEEEcCeEEEEEeCC-ceEEEEEcc-cCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEE
Q 013634 348 YFRKRP-TDTEARIVKIRSNGFIVFVPKF-GIEGPVYLT-PRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEV 424 (439)
Q Consensus 348 ~l~~~~-~~~~g~V~~v~~~g~~V~l~~~-gveg~v~~~-~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~ 424 (439)
|+.... +.++|+|+ +.++|+||.|+++ |++|+||++ +++++ ++.. ..+.+ +||+|+|+|.+
T Consensus 6 y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~---~~~~-----------~~~~~-~Gd~V~VkV~~ 69 (88)
T 1luz_A 6 YSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMD---RYVE-----------YRDKL-VGKTVKVKVIR 69 (88)
T ss_dssp SCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHH---HHHH-----------HHHHH-TTCEEEEEEEE
T ss_pred ecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcc---cccC-----------HhHEe-CCCEEEEEEEE
Confidence 454444 78999999 9999999999876 899999999 99765 2322 23456 99999999999
Q ss_pred ecCCCCCCceeEEe
Q 013634 425 VEPQPNRPKLQLTL 438 (439)
Q Consensus 425 vd~~~~~~~i~l~l 438 (439)
+|.+ +++|.||+
T Consensus 70 vd~~--~~kI~lsl 81 (88)
T 1luz_A 70 VDYT--KGYIDVNY 81 (88)
T ss_dssp EETT--TTEEEEEE
T ss_pred EECC--CCEEEEEE
Confidence 9976 89999986
No 6
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.79 E-value=6.6e-09 Score=92.86 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=57.3
Q ss_pred HHHHhcC---C-eEEEEEEEEEEcCeEEEEEeC-CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEE
Q 013634 346 LIYFRKR---P-TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 420 (439)
Q Consensus 346 ~~~l~~~---~-~~~~g~V~~v~~~g~~V~l~~-~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V 420 (439)
|+|+++. . +.++|+|+++.++|+||.|++ .|++|+||++++.++ ++ .+..+.+++||.|+|
T Consensus 5 ~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~---~v-----------~~~~~~~~vGd~V~V 70 (182)
T 1kl9_A 5 CRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRR---RI-----------RSINKLIRIGRNECV 70 (182)
T ss_dssp CCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC--------------------------CTTCEEEE
T ss_pred eEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCc---cc-----------CCHHHhcCCCCEEEE
Confidence 5677652 2 789999999999999999952 489999999999765 11 135688999999999
Q ss_pred EEEEecCCCCCCceeEEe
Q 013634 421 HMEVVEPQPNRPKLQLTL 438 (439)
Q Consensus 421 ~v~~vd~~~~~~~i~l~l 438 (439)
+|.++|.+ +++|.||+
T Consensus 71 kVl~vD~~--~~rI~LSl 86 (182)
T 1kl9_A 71 VVIRVDKE--KGYIDLSK 86 (182)
T ss_dssp EEEEEETT--TTEEEEES
T ss_pred EEEEEECC--CCEEEEEE
Confidence 99999976 89999986
No 7
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.77 E-value=1.8e-08 Score=77.77 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=56.6
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+.++|+|+++.++|+||.+++ |++|++|++++.+++ ...|++||.|+|+|.++|.+ +++
T Consensus 7 ~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~------------------~~~~~~Gd~V~v~V~~vd~~--~~~ 65 (80)
T 2k52_A 7 KFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLR------------------LENLNVGDEIIVQAIDVRPE--KRE 65 (80)
T ss_dssp CEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCC------------------GGGCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCccc------------------ceeeCCCCEEEEEEEEEECC--CCE
Confidence 689999999999999999987 899999999987541 04689999999999999975 899
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.||+
T Consensus 66 i~lsl 70 (80)
T 2k52_A 66 IDFKY 70 (80)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99987
No 8
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.76 E-value=8.6e-09 Score=91.64 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=59.8
Q ss_pred HHHHhcC---C-eEEEEEEEEEEcCeEEEEEeC-CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEE
Q 013634 346 LIYFRKR---P-TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 420 (439)
Q Consensus 346 ~~~l~~~---~-~~~~g~V~~v~~~g~~V~l~~-~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V 420 (439)
|+|+++. . +.+.|+|+++.++|+||.|++ .|++|+||++++.++ +. .+..+.+++||.|+|
T Consensus 5 ~~~~~~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~----~v----------~~~~~~~~vGd~V~v 70 (175)
T 2a19_A 5 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRR----RI----------RSIQKLIRVGKNDVA 70 (175)
T ss_dssp CCSSSSSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC----------------------CCCCCCCTTSEEEE
T ss_pred eEEhhhcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCc----cc----------CCHHHcCCCCCEEEE
Confidence 4566655 3 789999999999999999962 489999999999765 11 245678999999999
Q ss_pred EEEEecCCCCCCceeEEe
Q 013634 421 HMEVVEPQPNRPKLQLTL 438 (439)
Q Consensus 421 ~v~~vd~~~~~~~i~l~l 438 (439)
+|.++|.. +++|.||+
T Consensus 71 kVl~vd~~--~~~I~LSl 86 (175)
T 2a19_A 71 VVLRVDKE--KGYIDLSK 86 (175)
T ss_dssp EEEEEETT--TTEEEEES
T ss_pred EEEEEECC--CCeEEEEE
Confidence 99999976 89999986
No 9
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.74 E-value=9e-09 Score=94.69 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=69.5
Q ss_pred HHHHHhcCC-eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEe---eCCceEEeeCceEEE
Q 013634 345 TLIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVK---MDGNLSYSVLQTVNI 420 (439)
Q Consensus 345 ~~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~---~~~~~~~~iGd~V~V 420 (439)
.|.||+... +.++|+|++++++|+||.|+. .++|+++.+++.++ .|.||+....+++ +++++.|++||+|+|
T Consensus 73 k~~~f~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d---~~~fd~~~~~~vg~~~e~t~~~~~~Gd~Vrv 148 (218)
T 2ckz_B 73 RAVVFKPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFE---GCYYTPEESAWIWPMDEETKLYFDVNEKIRF 148 (218)
T ss_dssp EEEEECCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCT---TCEEETTTTEEEEECC--CEEEECTTCEEEE
T ss_pred EEEEecCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCC---CcEEcCcCceEEeeccccCCcEEcCCCEEEE
Confidence 456777776 899999999999999999976 58999999999877 4889988888888 777899999999999
Q ss_pred EEEEecCCC
Q 013634 421 HMEVVEPQP 429 (439)
Q Consensus 421 ~v~~vd~~~ 429 (439)
+|.+++...
T Consensus 149 rV~~v~~~~ 157 (218)
T 2ckz_B 149 RIEREVFVD 157 (218)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEccc
Confidence 999999763
No 10
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.73 E-value=2.8e-08 Score=89.02 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=68.3
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCC--C
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPN--R 431 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~--~ 431 (439)
+.++|+|+++.++|+||.+. +++|++|.+++.++ .|.+|+....+++++++..|++||.|+|+|.++|.+.. .
T Consensus 83 ev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d---~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~ 157 (180)
T 4ayb_E 83 EVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDD---TLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRL 157 (180)
T ss_dssp CEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSS---CEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC------
T ss_pred CEEEEEEeeeccceEEEEEC--CccceEEeeecCCC---ccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCccc
Confidence 78999999999999999985 58999999999988 58899988899999999999999999999999996532 3
Q ss_pred CceeEEe
Q 013634 432 PKLQLTL 438 (439)
Q Consensus 432 ~~i~l~l 438 (439)
.+|.||+
T Consensus 158 ~rI~ls~ 164 (180)
T 4ayb_E 158 PRIALTM 164 (180)
T ss_dssp -CEEEEC
T ss_pred CcEEEEc
Confidence 4677764
No 11
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.70 E-value=6.3e-08 Score=87.25 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=67.2
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCC---
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPN--- 430 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~--- 430 (439)
+.++|+|+++.++|+||.+. +++|++|.+++.++ .+.+|+....+++++....|++||.|+|+|.++|....
T Consensus 83 ev~~G~V~~v~~~G~fV~l~--~~eglvhis~l~~~---~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~ 157 (187)
T 1go3_E 83 ELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDD---YVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 157 (187)
T ss_dssp CEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSS---CEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred CEEEEEEEEEeCcEEEEEEc--CccEEEEhHHhCCC---cceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCC
Confidence 78999999999999999995 49999999999876 57888888888887788999999999999999997632
Q ss_pred CCceeEEe
Q 013634 431 RPKLQLTL 438 (439)
Q Consensus 431 ~~~i~l~l 438 (439)
..+|.||+
T Consensus 158 ~~~I~lS~ 165 (187)
T 1go3_E 158 GSKIALTM 165 (187)
T ss_dssp -CEEEEEC
T ss_pred ccEEEEEE
Confidence 23888875
No 12
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.68 E-value=4e-08 Score=83.15 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=58.8
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
..+.|.|++|.++|+||.|+. |++|+||++++.++ |.. +....|++||.|+|+|..||.. +++
T Consensus 9 ~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~----~~~----------~~~~~~~vGd~V~vkV~~vd~~--~~k 71 (130)
T 2k4k_A 9 SVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHG----FVK----------DINEHLSVGDEVQVKVLAVDEE--KGK 71 (130)
T ss_dssp CEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSS----CCS----------CGGGTCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCcc----ccc----------CccccCCCCCEEEEEEEEEeCC--CCE
Confidence 689999999999999999987 89999999999865 211 2356799999999999999975 789
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.||+
T Consensus 72 I~LSl 76 (130)
T 2k4k_A 72 ISLSI 76 (130)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 99986
No 13
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.64 E-value=9.3e-08 Score=84.96 Aligned_cols=75 Identities=9% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHhcCC-eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCe--EEEEeeCCceEEeeCceEEEEEEE
Q 013634 348 YFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQ--QKIVKMDGNLSYSVLQTVNIHMEV 424 (439)
Q Consensus 348 ~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~--~~l~~~~~~~~~~iGd~V~V~v~~ 424 (439)
+++... +.++|+|+++.++|+||.+. ..+|+||++.+++. |.+|+.. .++++++.+..|++||.|+|+|.+
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l~~~----~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSE----MEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 149 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTT----EEEESSSSSCEEEETTSCSEEETTCEEEEEEEE
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHHCCCC----cEECCCCCccEEEeCCCCEEECCCCEEEEEEEE
Confidence 344444 88999999999999999994 57899999999653 6676655 788887778899999999999999
Q ss_pred ecCC
Q 013634 425 VEPQ 428 (439)
Q Consensus 425 vd~~ 428 (439)
+|.+
T Consensus 150 vd~~ 153 (172)
T 2c35_B 150 TRVD 153 (172)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 9975
No 14
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.62 E-value=3.5e-08 Score=81.69 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=58.1
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+.++|+|+++.++|+||.|+. |++|+||++++.++. + ..+....|++||.|+|+|..+|.+ +++
T Consensus 32 ~~~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~---~----------~~~~~~~~~vGd~V~vkV~~vd~~--~~r 95 (115)
T 2khi_A 32 TKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTN---K----------NIHPSKVVNVGDVVEVMVLDIDEE--RRR 95 (115)
T ss_dssp CEEEEEEEEEETTEEEEECST-TCEEEEETTSSSCSS---T----------TCSSTTTCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccc---c----------ccCcccEECCCCEEEEEEEEEECC--CCE
Confidence 789999999999999999976 899999999986420 0 023466899999999999999975 789
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.|++
T Consensus 96 I~lsl 100 (115)
T 2khi_A 96 ISLGL 100 (115)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 99886
No 15
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=1.9e-08 Score=83.71 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=58.8
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
..++|+|++|.++|+||.|+.++.+|+||++++.+++ + .+....|++||.|+|+|..+|....+++
T Consensus 24 ~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~---~-----------~~~~~~~~~Gd~V~VkV~~vd~~~~~~~ 89 (119)
T 2cqo_A 24 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCR---V-----------DKPSEIVDVGDKVWVKLIGREMKNDRIK 89 (119)
T ss_dssp CEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSC---C-----------SCHHHHCCTTCEEEEEEEEEEECSSCEE
T ss_pred CEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCccc---c-----------cChhhcCCCCCEEEEEEEEEeccccCce
Confidence 6899999999999999999776789999999997651 1 1335679999999999999997522468
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.|++
T Consensus 90 i~LSl 94 (119)
T 2cqo_A 90 VSLSM 94 (119)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 99986
No 16
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.60 E-value=1.8e-08 Score=108.42 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=106.0
Q ss_pred ChhhHHHHHHHHHHcCCcc--cCC--CHHHHH---HHHHHHhCCChhHHHHH-HHHHHhhccCceecccCCCCCCCcCcc
Q 013634 203 TKEMLEPLLRTAAAVGLNL--DVS--SSKALA---DSLDRAVGDDPYFNKLI-RILATRCMTQAVYFCSGDLTPPEFHHY 274 (439)
Q Consensus 203 ~~~~~~~l~~~~~~~g~~~--~~~--~~~~l~---~~l~~~~~~~~~~~~~l-~~~~~r~m~~a~Y~~~~~~~~~~~~H~ 274 (439)
.+..++.+..++.-.|... +.+ .+.+++ +.+..+ + .+ ...++ ....+|.|..+.| +. .||
T Consensus 547 G~k~~ekl~~FL~i~G~~~pLD~t~VHPEsY~~a~kil~~~-g-~~-~e~li~~~~~Lrsl~~a~Y------a~---~hf 614 (785)
T 3bzc_A 547 GEKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADT-E-RD-IRSLIGDSAFLKRLDPKKF------TD---ETF 614 (785)
T ss_dssp CHHHHHHHGGGEECTTSSCGGGGSSCCGGGHHHHHHHHHHH-T-CC-HHHHTTCHHHHHHSCGGGT------CC---SSS
T ss_pred CHHHHHHhhheEEECCcccccccCcCCHHHHHHHHHHHHHc-C-CC-HHHHhhhHHHHHhcCHHHH------hh---hcC
Confidence 3445555555554445432 221 234443 445544 3 22 22344 4457899999999 32 499
Q ss_pred cccccccccccccccchhhHHHHHHHHHHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q 013634 275 GLAAPLYTHFTSPIRRYADVVVHRLLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRK-RP 353 (439)
Q Consensus 275 ~Lg~~~YthfTSPiRRY~DlvvHrqL~~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~~~r~~~~~~~~~~l~~-~~ 353 (439)
||. .+|++++.++....-|...+....+. ++. .-+++ .+
T Consensus 615 Gl~-----------------tl~rIi~eL~kpg~d~R~~~~~~~~~-----------------~~v------e~~~~l~v 654 (785)
T 3bzc_A 615 GLP-----------------TVTDILKELDKPGRDPRPEFKTAEFQ-----------------EGV------ESLKDLKP 654 (785)
T ss_dssp CHH-----------------HHHHHHHHHHSTTCCCSCCCCTTTTC-----------------CCC------CSSTTCCT
T ss_pred CcH-----------------HHHHHHHHHhccCCChhhhcccchhh-----------------hcc------cchhhcCC
Confidence 875 89999999885432121111111110 000 00111 22
Q ss_pred -eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCC
Q 013634 354 -TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432 (439)
Q Consensus 354 -~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~ 432 (439)
..++|+|++|.++|+||.+. .+++|+||++++.+. |..+ ....|++||.|+|+|.+||.. ++
T Consensus 655 G~iv~G~V~~V~~fGaFV~l~-~~~eGLVhiS~Lsd~----~v~d----------~~~~~~vGd~V~VkVi~VD~~--~~ 717 (785)
T 3bzc_A 655 GMVLEGVVTNVTNFGAFVDIG-VHQDGLVHISALSEK----FVKD----------PYEVVKAGDIVKVKVMEVDIP--RN 717 (785)
T ss_dssp TCBCCCEEEEEETTEEEEECS-SSSEEEEETTTSCSS----CCSC----------HHHHCCTTCCCCCBEEEEETT--TT
T ss_pred CCEEEEEEEEEecCCeEEEeC-CCcEEEEEHHHcCcc----ccCC----------hhheeCCCCEEEEEEEEEECC--CC
Confidence 78999999999999999995 489999999999864 3332 357799999999999999976 88
Q ss_pred ceeEEe
Q 013634 433 KLQLTL 438 (439)
Q Consensus 433 ~i~l~l 438 (439)
+|.||+
T Consensus 718 rI~LSl 723 (785)
T 3bzc_A 718 RVGLSM 723 (785)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 999986
No 17
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=5e-08 Score=79.12 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=56.7
Q ss_pred eEEEEEEEEEEcCeEEEEEeCC--ceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCC
Q 013634 354 TDTEARIVKIRSNGFIVFVPKF--GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNR 431 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~--gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~ 431 (439)
+.++|.|+++.++|+||.|+++ +++|+||++++.+++ + . .+..+.|++||.|+|+|.++|.
T Consensus 14 ~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~---~-~---------~~~~~~~~~Gd~V~VkV~~vd~---- 76 (103)
T 2eqs_A 14 DIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG---R-V---------ANVADVVSKGQRVKVKVLSFTG---- 76 (103)
T ss_dssp CEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSS---C-C---------CCHHHHCCTTCEEEEEEEEEET----
T ss_pred CEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCc---c-c---------CCcccEeCCCCEEEEEEEEEEC----
Confidence 7899999999999999999875 899999999995431 1 0 2345679999999999999994
Q ss_pred CceeEEe
Q 013634 432 PKLQLTL 438 (439)
Q Consensus 432 ~~i~l~l 438 (439)
.+|.||+
T Consensus 77 ~~i~LSl 83 (103)
T 2eqs_A 77 TKTSLSM 83 (103)
T ss_dssp TEEEEES
T ss_pred CeeEEEE
Confidence 4888886
No 18
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.48 E-value=2.5e-07 Score=84.82 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=59.1
Q ss_pred HHhcCC-eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeE--EEEeeCCceEEeeCceEEEEEEE
Q 013634 348 YFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ--KIVKMDGNLSYSVLQTVNIHMEV 424 (439)
Q Consensus 348 ~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~--~l~~~~~~~~~~iGd~V~V~v~~ 424 (439)
+++... +.++|+|+++.++|+||.+.. .+|+||++.+++. |.+|+... .+.+++ +.|++||.|+|+|.+
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~----~~~d~~~~~w~~~~~~--~~~~~Gd~VrVkV~~ 149 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQD----LTFNAGSNPPSYQSSE--DVITIKSRIRVKIEG 149 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSS----CCCBSSCSSCEEECSS--CEEETTCEEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCcc----ceeccccccceeeccc--cEECCCCEEEEEEEE
Confidence 344444 889999999999999999964 8999999999753 56665433 676554 779999999999999
Q ss_pred ecCC
Q 013634 425 VEPQ 428 (439)
Q Consensus 425 vd~~ 428 (439)
+|.+
T Consensus 150 vd~~ 153 (215)
T 2b8k_G 150 CISQ 153 (215)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 9975
No 19
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.48 E-value=1.1e-07 Score=77.85 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=58.4
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
..++|.|+++.++|+||.|++ |++|+||.+++.++ +. .+....|++||.|+|+|..+|.. +++
T Consensus 33 ~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~----~~----------~~~~~~~~vGd~V~v~V~~vd~~--~~k 95 (109)
T 2khj_A 33 AIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRD----RV----------EDATLVLSVGDEVEAKFTGVDRK--NRA 95 (109)
T ss_dssp SEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSS----SS----------SSGGGSCCTTCEEEEEEEEEETT--TTE
T ss_pred CEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcc----cc----------cChhhccCCCCEEEEEEEEEECC--CCE
Confidence 789999999999999999987 89999999998764 11 13456799999999999999975 789
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.||+
T Consensus 96 i~LS~ 100 (109)
T 2khj_A 96 ISLSV 100 (109)
T ss_dssp EEEET
T ss_pred EEEEE
Confidence 99986
No 20
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.47 E-value=2.6e-07 Score=87.88 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHhcCC---eEEEEEEEEEEcCeEEEEEeCC-ceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEE
Q 013634 348 YFRKRP---TDTEARIVKIRSNGFIVFVPKF-GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 423 (439)
Q Consensus 348 ~l~~~~---~~~~g~V~~v~~~g~~V~l~~~-gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~ 423 (439)
|++..+ ..+.|.|+++.++|+||.|+++ |++|+||++++.++ ++ . +....+++||.|.|+|.
T Consensus 4 ~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~---~v-~----------~~~~~~kvGd~V~vkVi 69 (275)
T 3aev_A 4 KAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVAST---WV-R----------NIRDYLKEGQKVVAKVI 69 (275)
T ss_dssp ---CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSS---CC-S----------CGGGTCCTTCEEEEEEE
T ss_pred ccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcc---cc-c----------CHHhccCCCCEEEEEEE
Confidence 555554 7899999999999999999863 99999999999865 11 1 23567999999999999
Q ss_pred EecCCCCCCceeEEe
Q 013634 424 VVEPQPNRPKLQLTL 438 (439)
Q Consensus 424 ~vd~~~~~~~i~l~l 438 (439)
++|.. +++|.||+
T Consensus 70 ~vD~~--~~~I~LSl 82 (275)
T 3aev_A 70 RVDPR--KGHIDLSL 82 (275)
T ss_dssp EEETT--TTEEEEES
T ss_pred EEECC--CCEEEEEE
Confidence 99976 89999986
No 21
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.47 E-value=8.1e-08 Score=87.57 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=68.0
Q ss_pred HHHHHhcCC-eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEe--------eCCceEEeeC
Q 013634 345 TLIYFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVK--------MDGNLSYSVL 415 (439)
Q Consensus 345 ~~~~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~--------~~~~~~~~iG 415 (439)
.+.||+... +.++|+|++++++|+||.|. .++|++|.+++.++ .|.||+....+++ ++.++.|++|
T Consensus 73 k~~~f~p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d---~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~G 147 (203)
T 3ayh_B 73 RLIIFRPFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFD---PCVFRPDERAWVWKIEGEDGSEGTELYFDID 147 (203)
T ss_dssp EEEEECCCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCT---TEEEEGGGTEEEEEECCCTTSCCEEEECCTT
T ss_pred EEEEEccCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCC---CceECccCceEEeecccccccccCCcEEcCC
Confidence 345666665 89999999999999999994 68999999999777 4888888888887 6678899999
Q ss_pred ceEEEEEEEecCC
Q 013634 416 QTVNIHMEVVEPQ 428 (439)
Q Consensus 416 d~V~V~v~~vd~~ 428 (439)
|+|+|+|.+++..
T Consensus 148 d~VrvrV~~v~~~ 160 (203)
T 3ayh_B 148 EEIRFQIESEDFV 160 (203)
T ss_dssp CEEEEEEEEEEEC
T ss_pred CEEEEEEEEEEcc
Confidence 9999999999874
No 22
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.46 E-value=5e-07 Score=80.14 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=57.0
Q ss_pred HhcCC-eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeE--EEEeeCCceEEeeCceEEEEEEEe
Q 013634 349 FRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQ--KIVKMDGNLSYSVLQTVNIHMEVV 425 (439)
Q Consensus 349 l~~~~-~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~--~l~~~~~~~~~~iGd~V~V~v~~v 425 (439)
++... +.++|+|+++.++|+||.+.. .+|+||++.+++. |.+++... ++.+++ +.|++||.|+|+|.++
T Consensus 79 ~~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~----~~~d~~~~~~~~~~~~--~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 79 FKPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQD----LTFNAGSNPPSYQSSE--DVITIKSRIRVKIEGC 150 (171)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTT----CEECC-----CEECSS--CEECTTCEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCC----ceECcccCceEEeccc--eEECCCCEEEEEEEEE
Confidence 33344 789999999999999999964 9999999999753 66666544 565543 7799999999999999
Q ss_pred cCC
Q 013634 426 EPQ 428 (439)
Q Consensus 426 d~~ 428 (439)
|.+
T Consensus 151 d~~ 153 (171)
T 1y14_B 151 ISQ 153 (171)
T ss_dssp EEE
T ss_pred EcC
Confidence 975
No 23
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.40 E-value=1.9e-07 Score=89.99 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=64.0
Q ss_pred HHHHhcC---C-eEEEEEEEEEEcCeEEEEEeC-CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEE
Q 013634 346 LIYFRKR---P-TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNI 420 (439)
Q Consensus 346 ~~~l~~~---~-~~~~g~V~~v~~~g~~V~l~~-~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V 420 (439)
|+|+.+. . ..+.|.|++|.++|+||.|++ .|++|+||++++.+. +. .+....|++||.|+|
T Consensus 3 ~~f~~~~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~----~i----------~~~~~~~kvGd~V~V 68 (308)
T 1q8k_A 3 CRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRR----RI----------RSINKLIRIGRNECV 68 (308)
T ss_dssp CCSSSSCCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCS----SC----------SCCTTTCSSSCEEEE
T ss_pred eEehhhcCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcc----cc----------cCHHHhcCCCCEEEE
Confidence 4566654 2 789999999999999999985 489999999999764 11 245678999999999
Q ss_pred EEEEecCCCCCCceeEEe
Q 013634 421 HMEVVEPQPNRPKLQLTL 438 (439)
Q Consensus 421 ~v~~vd~~~~~~~i~l~l 438 (439)
+|.++|.. +++|.||+
T Consensus 69 kVl~vD~~--~~rI~LSl 84 (308)
T 1q8k_A 69 KVIRVDKE--KGYIDLSK 84 (308)
T ss_dssp EEEEEETT--TTEEEEEC
T ss_pred EEEEEeCC--CCEEEEEE
Confidence 99999976 89999986
No 24
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.24 E-value=4.4e-07 Score=80.49 Aligned_cols=73 Identities=10% Similarity=0.041 Sum_probs=59.4
Q ss_pred HHhcCC-eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecC--CeEEEEeeCCceEEeeCceEEEEEEE
Q 013634 348 YFRKRP-TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDE--QQQKIVKMDGNLSYSVLQTVNIHMEV 424 (439)
Q Consensus 348 ~l~~~~-~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~--~~~~l~~~~~~~~~~iGd~V~V~v~~ 424 (439)
+++... +.++|+|+++.++|+||.+. .++|+||.+++++. |.+|+ ...++ ++..+.|++||+|+|+|.+
T Consensus 79 vf~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l~~~----~~~d~~~~~~~~--~~~~~~~~~Gd~VrvkV~~ 150 (172)
T 3h0g_G 79 LWRPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLVPPD----MKFDPTANPPNY--SGEDQVIEKGSNVRLKIVG 150 (172)
T ss_dssp EECCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGSCTT----CCCBSSSSSCBE--ESSSCEECSSCCEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEEcceEEEEeC--CeEEEEEHHHCCCc----cccCcccccceE--ecCCcEECCCCEEEEEEEE
Confidence 444444 88999999999999999995 57899999999654 55555 44455 4678899999999999999
Q ss_pred ecCC
Q 013634 425 VEPQ 428 (439)
Q Consensus 425 vd~~ 428 (439)
+|..
T Consensus 151 vd~~ 154 (172)
T 3h0g_G 151 TRTD 154 (172)
T ss_dssp EEES
T ss_pred EECC
Confidence 9976
No 25
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.24 E-value=5.5e-07 Score=74.93 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=54.8
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+.++|+|+++.++|+||.|...+.+|+++.+... + |+.++ +..+.|++||.|+|+|.++|.. +++
T Consensus 23 ~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~-~---~~~~~---------~~~~~~~~Gd~V~vkV~~vd~~--~~~ 87 (119)
T 1wi5_A 23 MLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQ-E---YIRQK---------NKGAKLKVGQYLNCIVEKVKGN--GGV 87 (119)
T ss_dssp CEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHH-H---HHHHH---------SSSCCCCTTCEEEEEEEECCTT--SCE
T ss_pred CEEEEEEEEEeCceEEEEECCCCeEEEEEEeccc-c---ccccc---------CccCEeCCCCEEEEEEEEEeCC--CCE
Confidence 7899999999999999999844777777665432 1 33322 2457899999999999999975 789
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.|++
T Consensus 88 i~Lsl 92 (119)
T 1wi5_A 88 VSLSV 92 (119)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 99986
No 26
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.02 E-value=1.4e-06 Score=82.45 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=58.7
Q ss_pred eEEEEEEEEEEcCeEEEEEeC-CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCC
Q 013634 354 TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~-~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~ 432 (439)
+.+.|.|+++.++|+||.+++ .|++|+||++++.++ ++ .+....+++||.|.|+|.++|.. ++
T Consensus 13 ~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~---~v-----------~~~~~~~~vGd~V~VkVi~vd~~--~g 76 (266)
T 3cw2_C 13 EILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSK---WV-----------KNIRDVLKENRKVIVKVIRVDRR--KG 76 (266)
T ss_dssp CEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCS---SC-----------CCHHHHSCTTCEEEEEECCCCSS--SC
T ss_pred CEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcc---cc-----------cCHHHhCcCCCEEEEEEEEEeCC--CC
Confidence 789999999999999999975 489999999999765 11 13356799999999999999865 78
Q ss_pred ceeEEe
Q 013634 433 KLQLTL 438 (439)
Q Consensus 433 ~i~l~l 438 (439)
+|.||+
T Consensus 77 ~I~LSl 82 (266)
T 3cw2_C 77 TVDVSL 82 (266)
T ss_dssp CCBEES
T ss_pred EEEEEE
Confidence 999986
No 27
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.85 E-value=2.6e-05 Score=74.48 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=53.3
Q ss_pred eEEEEEEEEEEcCeEEE-EEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCC
Q 013634 354 TDTEARIVKIRSNGFIV-FVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V-~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~ 432 (439)
+..+|+|.++.++|+|| .+++ |++|+||.+++.. .+++||+|+|+|..||.+ .+
T Consensus 154 ~~V~g~V~~i~~~G~fV~~i~~-g~~Glih~SEl~~----------------------~l~~Gd~v~~~V~~id~~--d~ 208 (285)
T 3go5_A 154 QNWPAIVYRLKLSGTFVYLPEN-NMLGFIHPSERYA----------------------EPRLGQVLDARVIGFREV--DR 208 (285)
T ss_dssp CEEEEEEEEEETTEEEEEETTT-TEEEEECGGGCSS----------------------CCCTTCEEEEEEEEEETT--TT
T ss_pred CEEEEEEEEEeCCcEEEEEeCC-CeEEEEEHHHccc----------------------cCCCCCEEEEEEEEEECC--CC
Confidence 78999999999999999 7755 9999999998753 379999999999999975 78
Q ss_pred ceeEEe
Q 013634 433 KLQLTL 438 (439)
Q Consensus 433 ~i~l~l 438 (439)
||.|||
T Consensus 209 kI~LSl 214 (285)
T 3go5_A 209 TLNLSL 214 (285)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999987
No 28
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.84 E-value=1e-05 Score=90.80 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=59.1
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
..++|+|++|.++|+||.|. .|++|+||++++.++ .|.. +....|++||.|+|+|..||.. +++
T Consensus 904 ~iv~G~V~~V~~fGaFV~L~-~gveGLVHiSelsd~---~~v~----------~p~~v~kvGd~V~vkVl~VD~~--~~r 967 (1219)
T 3psi_A 904 SIIPVRVERFWHNDIICTTN-SEVECVVNAQRHAGA---QLRR----------PANEIYEIGKTYPAKVIYIDYA--NIT 967 (1219)
T ss_dssp CEEEEEEEEECSSCEEEECT-TSCEEEECTTSSSST---TSCS----------CSTTTSCTTCEEEEEEEEEEGG--GTE
T ss_pred CEEEEEEEEEecceEEEEeC-CCceEEEEHHHcCCC---cccC----------CHHHcCCCCCEEEEEEEEEECC--CCE
Confidence 67999999999999999995 599999999999876 2222 2356799999999999999976 899
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.||+
T Consensus 968 I~LSl 972 (1219)
T 3psi_A 968 AEVSL 972 (1219)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99986
No 29
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.83 E-value=3.2e-06 Score=90.11 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+.++|+|+++.++|+||.|.. |++|+||++++.++ ++ .+....|++||.|+|+|.++|. ++|
T Consensus 639 ~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~---rv-----------~~~~d~~kvGD~V~VkVi~iD~---~gr 700 (726)
T 4aid_A 639 KIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNE---RV-----------AKPSDVLKEGQMVKVKLLGFDD---RGK 700 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCcc---cc-----------cCccccCCCCCEEEEEEEEECC---CCc
Confidence 789999999999999999976 89999999999865 11 1456789999999999999995 578
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.||+
T Consensus 701 I~LS~ 705 (726)
T 4aid_A 701 TKLSM 705 (726)
T ss_dssp -----
T ss_pred EEEEE
Confidence 88875
No 30
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=97.65 E-value=6.7e-06 Score=90.84 Aligned_cols=69 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
..++|+|++|.++|+||.|. .|++|+||++++.++ .|.. +....|++||.|+|+|.+||.. +++
T Consensus 907 ~iv~G~V~~V~~fGaFV~L~-~gveGLVHiSelsd~---~~v~----------~~~~v~kvGd~V~vkVl~VD~~--~~r 970 (1030)
T 3psf_A 907 SIIPVRVERFWHNDIICTTN-SEVECVVNAQRHAGA---QLRR----------PANEIYEIGKTYPAKVIYIDYA--NIT 970 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEEEEccCeEEEEeC-CCcEEEEEHHHcCCC---cccC----------CHHHcCCCCCEEEEEEEEEECC--CCE
Confidence 56899999999999999995 499999999999875 1122 3457899999999999999976 889
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.||+
T Consensus 971 I~LSl 975 (1030)
T 3psf_A 971 AEVSL 975 (1030)
T ss_dssp -----
T ss_pred EEEEe
Confidence 99886
No 31
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.61 E-value=8.3e-06 Score=87.30 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+.++|+|+++.++|+||.+.. |++|+||++++.++ +. .+....+++||.|+|+|.++|. +++
T Consensus 629 ~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~----~v----------~~~~~~~~vGd~V~VkVi~vd~---~gr 690 (723)
T 3cdi_A 629 RVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADK----RV----------EKVTDYLQMGQEVPVKVLEVDR---QGR 690 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCc----cc----------cCcccccCCCCEEEEEEEEECC---CCc
Confidence 789999999999999999976 89999999999764 11 2456789999999999999995 678
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
|.||+
T Consensus 691 I~LS~ 695 (723)
T 3cdi_A 691 IRLSI 695 (723)
T ss_dssp -----
T ss_pred EEEEE
Confidence 88875
No 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.35 E-value=9.5e-06 Score=87.18 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=47.1
Q ss_pred ccccccccccccchhhHHHHH--HHHHHhCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-e
Q 013634 278 APLYTHFTSPIRRYADVVVHR--LLSASLGIYKLPSVFQDRPQLTSIADNLNYRHRNAQMASRGSVELHTLIYFRKRP-T 354 (439)
Q Consensus 278 ~~~YthfTSPiRRY~DlvvHr--qL~~~l~~~~~~~~~~~~~~l~~~~~~~n~~~~~a~~~~r~~~~~~~~~~l~~~~-~ 354 (439)
.|...+|+.|..++.|+|-+. .|+.+....... .+-+. +..+ +++.....+.+..++..+... ....-.. +
T Consensus 596 ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~---IdI~~-dG~v-~Is~~~~~~~~~a~~~i~~i~-~p~~~~vG~ 669 (757)
T 1e3p_A 596 APRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAE---ITIED-DGTI-YIGAADGPAAEAARATINGIA-NPTSPEVGE 669 (757)
T ss_dssp SCBCCCC------------------CTTCCCCCSC---C----------CCCBSSHHHHCC-------------------
T ss_pred CceeEEEEEChHHeehcccccceeeehhhHhhCCE---EEecC-CceE-EEecCCHHHHHHHHHHHHHhc-chhhccccc
Confidence 577889999999999999775 555544321110 00000 0000 011111110000111111100 0111122 7
Q ss_pred EEEEEEEEEEcCeEEEEEeCCceEEEEEcccC----CCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCC
Q 013634 355 DTEARIVKIRSNGFIVFVPKFGIEGPVYLTPR----GQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPN 430 (439)
Q Consensus 355 ~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l----~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~ 430 (439)
.++|+|+++.++|+||.|.. |++|+||++++ .++ +. .+....|++||+|+|+|.++|.
T Consensus 670 i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~----rv----------~~~~~~~~vGd~V~VkVi~vd~--- 731 (757)
T 1e3p_A 670 RILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGK----RV----------ENVEDVLGVGQKVQVEIAEIDS--- 731 (757)
T ss_dssp ---CBEEECC-CSCEECCC----CCCCC---------------------------------CCSSCBCCCCCCCCCS---
T ss_pred EEEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCC----cc----------cCcccccCCCCEEEEEEEEECC---
Confidence 89999999999999999965 89999999998 554 11 2456789999999999999995
Q ss_pred CCceeEEe
Q 013634 431 RPKLQLTL 438 (439)
Q Consensus 431 ~~~i~l~l 438 (439)
+++|.||+
T Consensus 732 ~grI~LS~ 739 (757)
T 1e3p_A 732 RGKLSLIP 739 (757)
T ss_dssp SCC-----
T ss_pred CCCEEEEE
Confidence 67888876
No 33
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=97.09 E-value=0.0008 Score=59.75 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=53.2
Q ss_pred CeEEEEEEEEEEcCeEEEEEeCC---------ceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEE
Q 013634 353 PTDTEARIVKIRSNGFIVFVPKF---------GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 423 (439)
Q Consensus 353 ~~~~~g~V~~v~~~g~~V~l~~~---------gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~ 423 (439)
...+.|.|+++.++|++|.|... +++|++|++++.+.. . .+....+++||.|+++|.
T Consensus 58 GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~----~----------~~~~~~~~~GD~V~akVi 123 (179)
T 3m7n_A 58 GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGY----V----------KEISEAVGYLDILKARVI 123 (179)
T ss_dssp TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSC----C----------SSGGGTCCTTCEEEEEEE
T ss_pred CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcch----h----------hCHhhcCCCCCEEEEEEE
Confidence 47899999999999999999764 899999999987641 1 134678999999999998
Q ss_pred EecCCCCCCceeEEe
Q 013634 424 VVEPQPNRPKLQLTL 438 (439)
Q Consensus 424 ~vd~~~~~~~i~l~l 438 (439)
+ +++.||+
T Consensus 124 ~-------~~i~LS~ 131 (179)
T 3m7n_A 124 G-------DNLRLST 131 (179)
T ss_dssp E-------TTTEEEC
T ss_pred C-------CeEEEEE
Confidence 6 5666664
No 34
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.92 E-value=0.00093 Score=60.78 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=55.3
Q ss_pred eEEEEEEEEEEcCeEEEEEeC-------CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEec
Q 013634 354 TDTEARIVKIRSNGFIVFVPK-------FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 426 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~-------~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd 426 (439)
....|.|+++.++|++|.|.. .+++|.||.+++...+ .+. .+....+++||.|+++|.+++
T Consensus 83 DvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~-----~~~-------~~~~~~l~~GD~V~akVisi~ 150 (209)
T 2nn6_I 83 AIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATE-----KDK-------VEIYKSFRPGDIVLAKVISLG 150 (209)
T ss_dssp CEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCS-----SCC-------CCGGGTCCSSSEEEEEEEEEE
T ss_pred CEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHccccc-----ccc-------cchhhhcCCCCEEEEEEEEEe
Confidence 789999999999999999852 3789999999887541 010 023566999999999999998
Q ss_pred CCCCCCceeEEe
Q 013634 427 PQPNRPKLQLTL 438 (439)
Q Consensus 427 ~~~~~~~i~l~l 438 (439)
.. +.++.||+
T Consensus 151 ~~--~~~i~LS~ 160 (209)
T 2nn6_I 151 DA--QSNYLLTT 160 (209)
T ss_dssp TT--TTEEEEEC
T ss_pred CC--CCeEEEEE
Confidence 54 45788875
No 35
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.31 E-value=0.0026 Score=61.92 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=51.4
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+..+|+|.++.+++++|.+. +.||+++.+++. .+..|++||+|+|.|.+++......+
T Consensus 136 eIV~G~V~ri~~~~v~VDlG--k~EgiLp~sE~i--------------------p~E~~~vGD~Vkv~V~~V~~~~kg~~ 193 (344)
T 1hh2_P 136 TVTTAEVIRVMGEWADIRIG--KLETRLPKKEWI--------------------PGEEIKAGDLVKVYIIDVVKTTKGPK 193 (344)
T ss_dssp CEEEEEEEEECSSEEEEEET--TEEEEEEGGGSC--------------------TTCCCCTTCEEEEEEEEEEEETTEEE
T ss_pred CEEEEEEEEEecCcEEEEeC--CeEEEEeHHHcC--------------------CCcCCCCCCEEEEEEEEEEcCCCCcE
Confidence 68999999999999999995 899999998763 13578999999999999996533356
Q ss_pred eeEE
Q 013634 434 LQLT 437 (439)
Q Consensus 434 i~l~ 437 (439)
|.||
T Consensus 194 I~LS 197 (344)
T 1hh2_P 194 ILVS 197 (344)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7766
No 36
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=96.01 E-value=0.0049 Score=57.60 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=55.0
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+...|.|+++.++|++|.+.. +.+|++|++++.+. +.+.+ .+....+++||.|.++|.+++.. .+
T Consensus 76 DiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~---~~~~~--------~~~~~~l~vGD~V~arVi~v~~~---~~ 140 (251)
T 2je6_I 76 DIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGR---SINVG--------EDLRRYLDVGDYVIARIENFDRS---ID 140 (251)
T ss_dssp CEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTS---CCCTT--------CCCSSSCCTTCEEEEEEEEEETT---EE
T ss_pred CEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCC---ccccc--------cchhhcCCCCCEEEEEEEEECCC---Cc
Confidence 788999999999999999976 78999999988653 11111 13456799999999999999853 47
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
+.||+
T Consensus 141 i~LS~ 145 (251)
T 2je6_I 141 PVLSV 145 (251)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77764
No 37
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.94 E-value=0.012 Score=54.14 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=54.5
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+...|.|+++.+++++|.+.. ..+|.+|++++.... +. .+....+++||.|.++|.+++.. .+
T Consensus 59 DiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~---~~----------~~~~~~l~~GD~V~arVi~v~~~---~~ 121 (229)
T 2ba0_A 59 DVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMK---PN----------KKPNEVLDIGDAIIAKVLNIDPK---MK 121 (229)
T ss_dssp CEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCC---TT----------SCGGGTCCTTCEEEEEEEEECTT---CC
T ss_pred CEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccc---cc----------cchhcccCCCCEEEEEEEEECCC---Cc
Confidence 789999999999999999975 689999999887420 10 13456799999999999999863 57
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
+.||+
T Consensus 122 i~LS~ 126 (229)
T 2ba0_A 122 VTLTM 126 (229)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77764
No 38
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=95.88 E-value=0.0061 Score=56.42 Aligned_cols=71 Identities=8% Similarity=-0.050 Sum_probs=54.7
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+...|.|+++.++|++|.+.. +.+|.+|++++.+. ..+.+. .+....+++||.|.++|.+++.. .+
T Consensus 68 DiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~---~~~~~~-------~~~~~~l~~GD~V~a~Vi~v~~~---~~ 133 (235)
T 2z0s_A 68 DVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGR---PFNPAV-------DDMQSLLKVGDYIKAKVVAFDKT---RS 133 (235)
T ss_dssp CCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTS---CCCTTT-------TCCTTSSCTTCEEEEEEEEECTT---SC
T ss_pred CEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCC---ccccch-------hhHhhcCCCCCEEEEEEEEECCC---Cc
Confidence 688999999999999999976 78999999988642 011110 12356799999999999999853 46
Q ss_pred eeEEe
Q 013634 434 LQLTL 438 (439)
Q Consensus 434 i~l~l 438 (439)
+.||+
T Consensus 134 i~LS~ 138 (235)
T 2z0s_A 134 PLLTV 138 (235)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77764
No 39
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=95.37 E-value=0.027 Score=53.55 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=47.6
Q ss_pred eEEEEEEEEEE-cCeEEEEEeCC-ceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCC
Q 013634 354 TDTEARIVKIR-SNGFIVFVPKF-GIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNR 431 (439)
Q Consensus 354 ~~~~g~V~~v~-~~g~~V~l~~~-gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~ 431 (439)
+...|.|+++. ++|+||.+. . |.+|+||++++++. ....+++||.|.|.+ .+|. +
T Consensus 71 ~~~~g~V~~v~~~~GaFVdiG-~~~~d~lvp~sel~~~------------------~~~~~~~Gd~v~v~l-~iD~---~ 127 (285)
T 3go5_A 71 QFGWGRVTEVRKDLGVFVDTG-LPDKEIVVSLDILPEL------------------KELWPKKGDQLYIRL-EVDK---K 127 (285)
T ss_dssp SCEEEEEEEEETTTEEEEECS-CTTCCEEEEGGGSCSS------------------GGGSCCTTCEEEEEE-EECT---T
T ss_pred CEEEEEEEEEccCceEEEEEC-CCCcEEEEEHHHCCcc------------------cccccCCCCEEEEEE-EECC---C
Confidence 67899999999 799999994 4 68999999998643 012358899997775 6774 4
Q ss_pred CceeEEe
Q 013634 432 PKLQLTL 438 (439)
Q Consensus 432 ~~i~l~l 438 (439)
+||.+++
T Consensus 128 ~Ri~ls~ 134 (285)
T 3go5_A 128 DRIWGLL 134 (285)
T ss_dssp SCEEEEE
T ss_pred CcEEEEe
Confidence 6787774
No 40
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.14 E-value=0.028 Score=54.87 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=52.6
Q ss_pred CeEEEEEEEE----EEcCeEEEEEeC--CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEec
Q 013634 353 PTDTEARIVK----IRSNGFIVFVPK--FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 426 (439)
Q Consensus 353 ~~~~~g~V~~----v~~~g~~V~l~~--~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd 426 (439)
.+..+|+|.. +.+++++|.+.. .++||.++.+++- ++..|+.||+|+|.|.+|+
T Consensus 131 GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi--------------------P~E~~~~GDrVkvyV~~V~ 190 (366)
T 1k0r_A 131 GEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV--------------------PGESYEHGNRLRCYVVGVT 190 (366)
T ss_dssp TCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC--------------------TTCCCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC--------------------CCccCCCCCEEEEEEEEEe
Confidence 3789999999 999999999952 1499999987653 2467999999999999999
Q ss_pred CCCCCCceeEE
Q 013634 427 PQPNRPKLQLT 437 (439)
Q Consensus 427 ~~~~~~~i~l~ 437 (439)
.....++|.||
T Consensus 191 ~~~kgpqI~LS 201 (366)
T 1k0r_A 191 RGAREPLITLS 201 (366)
T ss_dssp CCSSSCEEEEE
T ss_pred cCCCccEEEEE
Confidence 87555677776
No 41
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=93.66 E-value=0.11 Score=47.94 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=51.7
Q ss_pred CeEEEEEEEE----EEcCeEEEEEeC--CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEec
Q 013634 353 PTDTEARIVK----IRSNGFIVFVPK--FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 426 (439)
Q Consensus 353 ~~~~~g~V~~----v~~~g~~V~l~~--~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd 426 (439)
.+..+|+|.. +.+..++|.+.. -+.||.++.+++- .+..|+.||+|+|.|.+|+
T Consensus 8 GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi--------------------p~E~~~~GDrIkayV~~V~ 67 (251)
T 2asb_A 8 GEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV--------------------PGESYEHGNRLRCYVVGVT 67 (251)
T ss_dssp TCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC--------------------TTCCCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC--------------------CCccCCCCCEEEEEEEEEE
Confidence 4788999999 788889999842 1489999877643 2467999999999999999
Q ss_pred CCCCCCceeEE
Q 013634 427 PQPNRPKLQLT 437 (439)
Q Consensus 427 ~~~~~~~i~l~ 437 (439)
.....++|.||
T Consensus 68 ~~~~gpqIiLS 78 (251)
T 2asb_A 68 RGAREPLITLS 78 (251)
T ss_dssp CCSSSCEEEEE
T ss_pred cCCCCCEEEEE
Confidence 76445788887
No 42
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=92.77 E-value=0.17 Score=51.85 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=48.2
Q ss_pred eEEEEEEEEEEcC--eEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecC
Q 013634 354 TDTEARIVKIRSN--GFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEP 427 (439)
Q Consensus 354 ~~~~g~V~~v~~~--g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~ 427 (439)
..|.|.|.++.++ |+||.+.. |.+|++|++++... +..++.... ...+....++.||.|.|+|.+...
T Consensus 47 nIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~----~~~~~~~~~-~~~~i~d~lk~Gq~VlVQV~Ke~~ 116 (517)
T 2bx2_L 47 NIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIARE----YFPANYSAH-GRPNIKDVLREGQEVIVQIDKEER 116 (517)
T ss_dssp CEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGG----GCC--------CCCGGGTCCTTCEEEEEEEECCC
T ss_pred CEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChh----hhccccccc-cccchhhhccCCCEEEEEEEeecc
Confidence 5899999999999 99999976 99999999998643 111100000 001223568999999999998664
No 43
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=91.74 E-value=0.44 Score=41.71 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=52.2
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
+...|.|+++..++++|.+......|.+|+++++.. ..+.+..+++||.|..+|..++.. .+
T Consensus 9 DvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~---------------~k~~r~~l~~GDlV~ArV~~~~~~---~~ 70 (175)
T 2ja9_A 9 DFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNA---------------SKKNRPTLQVGDLVYARVCTAEKE---LE 70 (175)
T ss_dssp CEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTC---------------CSSSCCCCCTTCEEEEEEEECCTT---SC
T ss_pred CEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCch---------------hhhhhccCCCCCEEEEEEEEecCC---Cc
Confidence 678999999999999999975468899999877532 024577899999999999998853 34
Q ss_pred eeEE
Q 013634 434 LQLT 437 (439)
Q Consensus 434 i~l~ 437 (439)
+.|+
T Consensus 71 ~~Lt 74 (175)
T 2ja9_A 71 AEIE 74 (175)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5554
No 44
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=91.63 E-value=0.066 Score=42.53 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=31.0
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCC
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQ 388 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~ 388 (439)
+.+++.|..+.++|+||.|+. +++|+||++++.+
T Consensus 63 e~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~~ 96 (101)
T 2bh8_A 63 DRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDISW 96 (101)
T ss_dssp CEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEEE
T ss_pred CEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCcc
Confidence 789999999999999999976 8999999998764
No 45
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=85.22 E-value=0.47 Score=45.33 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=49.7
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCCc
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRPK 433 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~ 433 (439)
....|.|+++..++++|.|.. ...+.++++.+.... +... ......+.+....+++||.|.++|.+++. ..+
T Consensus 97 DvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~g---g~iR-~~~~~D~~~m~~~l~vGDlV~ArVisv~~---~~~ 168 (308)
T 2nn6_H 97 DIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPG---GELR-RRSAEDELAMRGFLQEGDLISAEVQAVFS---DGA 168 (308)
T ss_dssp BCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-----------------CHHHHHHSCSSCEECCEEEEEET---TTE
T ss_pred CEEEEEEEEEeCceEEEEECC-CcCCceechhhcccc---ceee-cccchhhhhhhccCCCCCEEEEEEEEcCC---CCC
Confidence 678999999999999999964 467888988764210 0000 00000011234679999999999999984 356
Q ss_pred eeEE
Q 013634 434 LQLT 437 (439)
Q Consensus 434 i~l~ 437 (439)
+.|+
T Consensus 169 i~LS 172 (308)
T 2nn6_H 169 VSLH 172 (308)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6665
No 46
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=75.99 E-value=6.2 Score=35.43 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=46.8
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCe-----EEEEeeCCceEEeeCceEEEEEEEecCC
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQ-----QKIVKMDGNLSYSVLQTVNIHMEVVEPQ 428 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~-----~~l~~~~~~~~~~iGd~V~V~v~~vd~~ 428 (439)
+..+|+|..+.+.|+.+.+-. -+..+|+-..++.+ |.++... ..|+.++.. ++|+.|+++|.+++..
T Consensus 131 evL~G~V~~~s~~~Ig~~~~G-~Fn~~Ip~~~ip~~----~~f~~~~~~~~~~~wv~~~~~---~ig~~IRFrV~~~~~~ 202 (214)
T 2rf4_A 131 DVLEGYIFIQSASHIGLLIHD-AFNASIKKNNIPVD----WTFVHNDGNRSLGHWVDSNGE---PIDGKLRFTVRNVHTT 202 (214)
T ss_dssp CEEEEEECCCCSSCEEEEETT-TEEEEECSTTSCSS----CBCCCCSCC-CCCCCBCSSCC---BCCSEEEEEEEEEECC
T ss_pred CEEEEEEEEECCCcEEEEEeC-CEEEEEcHHHCCCc----ccccccccccCCCceEcCCCC---CCCCEEEEEEEEEEec
Confidence 678999999999998886532 35678888888765 3443322 344433232 3799999999999864
No 47
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=75.29 E-value=6 Score=30.92 Aligned_cols=56 Identities=5% Similarity=-0.114 Sum_probs=37.6
Q ss_pred eEEEEEEEEEE---cCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEec
Q 013634 354 TDTEARIVKIR---SNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 426 (439)
Q Consensus 354 ~~~~g~V~~v~---~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd 426 (439)
...+|+|.... .+| |+.-++-|.+.++|++.+.+.. | ..+.+++|+.|+.+|..+.
T Consensus 15 ~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~---~-------------~~~~l~~Ge~V~g~V~~i~ 73 (101)
T 2bh8_A 15 GKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGA---A-------------VRGNPQQGDRVEGKIKSIT 73 (101)
T ss_dssp -CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSS---C-------------CCCCCCTTCEEEEEEEECC
T ss_pred ccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCC---c-------------cccCCCCCCEEEEEEEEeC
Confidence 45689998873 455 5555554699999999987541 1 0145677888887777655
No 48
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=75.25 E-value=2.1 Score=32.15 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=43.1
Q ss_pred eEEEEEEEEEEcCe-EEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCC
Q 013634 354 TDTEARIVKIRSNG-FIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432 (439)
Q Consensus 354 ~~~~g~V~~v~~~g-~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~ 432 (439)
-..+|+|+...++| +.|.+++ |..-.++++.. + ++..-.+.+||.|.|++..-|+. +.
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK-------~-----------Rk~~I~Il~GD~V~ve~~~yd~~--kg 72 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELEN-GHKVLAHISGK-------M-----------RQHYIRILPEDRVVVELSPYDLS--RG 72 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETT-SCEEEEEECHH-------H-----------HHTTCCCCTTCEEEEEEETTEEE--EE
T ss_pred EEEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcc-------e-----------ecCCccCCCCCEEEEEECccCCC--cE
Confidence 56899999998555 5688865 76666776542 1 12234578999999999866643 66
Q ss_pred ceeEE
Q 013634 433 KLQLT 437 (439)
Q Consensus 433 ~i~l~ 437 (439)
+|...
T Consensus 73 rIi~R 77 (79)
T 3i4o_A 73 RIVYR 77 (79)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66543
No 49
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=65.27 E-value=9.4 Score=29.95 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=41.0
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeC-CceEEeeCceEEEE
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMD-GNLSYSVLQTVNIH 421 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~-~~~~~~iGd~V~V~ 421 (439)
..+.|+|+++.+.++.|.+.+ |-++.|..+++.+-. .|... ..+ ....++.||.|.|+
T Consensus 35 ~~~~AvV~~v~~~~~~v~~~~-g~~~~l~~~~~~WA~--~~~~~-------~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 35 DILAAVVLSATPGAVEAFRKN-GETIRITGDGLKAAH--RFLSN-------DPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TCEEEEEEEEETTEEEEEETT-SCEEEECGGGGSTTG--GGTTT-------CTTTGGGSCCTTEEEEEE
T ss_pred CeEEEEEEEeCCCeEEEEEcC-CCeEEEcHHHChhhh--hcccc-------cccchhccCCCCCEEEEE
Confidence 568899999999999999965 677778777765431 11100 012 34668999999998
No 50
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=57.09 E-value=16 Score=26.44 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=22.7
Q ss_pred eCCceEEeeCceEEEEEEEecCCCCCCceeEE
Q 013634 406 MDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLT 437 (439)
Q Consensus 406 ~~~~~~~~iGd~V~V~v~~vd~~~~~~~i~l~ 437 (439)
++.+..+.+||-|+|+|.+++. .+++|-
T Consensus 6 Rk~GEsI~IGd~I~ItVl~v~g----~~VrLG 33 (70)
T 2jpp_A 6 RKVGESINIGDDITITILGVSG----QQVRIG 33 (70)
T ss_dssp EETTCEEEETTTEEEEEEEEET----TEEEEE
T ss_pred ccCCCeEEECCCEEEEEEEEeC----CEEEEE
Confidence 5678899999999999999983 555554
No 51
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.09 E-value=19 Score=28.69 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=42.8
Q ss_pred eEEEEEEEEEEcCe-EEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCC
Q 013634 354 TDTEARIVKIRSNG-FIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432 (439)
Q Consensus 354 ~~~~g~V~~v~~~g-~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~ 432 (439)
....|.|+....++ +.|.+++ |.+-++|++..- +..-.+..||.|.|.+..-+. ..+.
T Consensus 15 ge~~g~V~~~lgn~~f~V~l~n-G~~~la~i~GK~-------------------Rk~IwI~~GD~VlVe~~~yd~-~~kg 73 (111)
T 2dgy_A 15 QQQIVRVLRTPGNNLHEVETAQ-GQRFLVSMPSKY-------------------RKNIWIKRGDFLIVDPIEEGE-KVKA 73 (111)
T ss_dssp SCEEEEEEECCSSSEEEEECTT-SCEEEEECCTTC-------------------CSCCCCCSSCEEEEEECSSCS-SCCE
T ss_pred CeEEEEEEEeCCCCEEEEEeCC-CCEEEEEechhh-------------------cccEEEcCCCEEEEEecccCC-cceE
Confidence 56889999988776 5577765 999888886532 224557899999999865431 2355
Q ss_pred ceeE
Q 013634 433 KLQL 436 (439)
Q Consensus 433 ~i~l 436 (439)
+|..
T Consensus 74 ~Iv~ 77 (111)
T 2dgy_A 74 EISF 77 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 52
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=54.56 E-value=19 Score=33.75 Aligned_cols=58 Identities=9% Similarity=-0.069 Sum_probs=45.8
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecC
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEP 427 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~ 427 (439)
...-|.|+++....+.|.|.. ...+.++..++... . ++....|++||.|..+|.+++.
T Consensus 129 DiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~Ga--------t-------k~~r~~f~~GDlV~ArV~s~~~ 186 (289)
T 2nn6_G 129 DHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFEGA--------T-------KRNRPNVQVGDLIYGQFVVANK 186 (289)
T ss_dssp EEEEEEEEEEETTEEEEECSS-SSCCCEESCSSSCC--------S-------SCSSSSSCTTCEEEEEEEECCT
T ss_pred CEEEEEEEEEeCcEEEEEECC-CceeEEehhhcCcc--------h-------hhhhhhcCCCCEEEEEEEEcCC
Confidence 678999999999999999975 46678888765522 0 1345779999999999998774
No 53
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=54.20 E-value=25 Score=24.92 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=23.2
Q ss_pred eeCCceEEeeCceEEEEEEEecCCCCCCceeEE
Q 013634 405 KMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLT 437 (439)
Q Consensus 405 ~~~~~~~~~iGd~V~V~v~~vd~~~~~~~i~l~ 437 (439)
.++.+..+.+||-|+|+|.+++. .+++|-
T Consensus 7 tRk~GE~I~Igd~I~I~Vl~i~g----~~VrlG 35 (63)
T 2bti_A 7 TRRVGETLMIGDEVTVTVLGVKG----NQVRIG 35 (63)
T ss_dssp EEETTCEEEETTTEEEEEEEEET----TEEEEE
T ss_pred eccCCCeEEeCCCEEEEEEEEeC----CEEEEE
Confidence 36778999999999999999983 555553
No 54
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=53.99 E-value=20 Score=29.93 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=44.8
Q ss_pred eEEEEEEEEEEcCe-EEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCC
Q 013634 354 TDTEARIVKIRSNG-FIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432 (439)
Q Consensus 354 ~~~~g~V~~v~~~g-~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~ 432 (439)
....|+|+...+++ +.|.++. |..-++|++..- +..-.+..||.|.|.+..-+. .|.
T Consensus 31 ge~~g~V~e~lgn~~f~V~l~n-G~~~La~I~GKm-------------------Rk~IwI~~GD~VlVe~~~yd~--~KG 88 (143)
T 1d7q_A 31 GQEYAQVIKMLGNGRLEAMCFD-GVKRLCHIRGKL-------------------RKKVWINTSDIILVGLRDYQD--NKA 88 (143)
T ss_dssp TEEEEEEEEECSSSEEEEEETT-TEEEEEECCSGG-------------------GGSCCCCTTCEEEEECSSSSS--SCC
T ss_pred CEEEEEEEEEcCCCEEEEEeCC-CCEEEEEecccc-------------------eeeEEecCCCEEEEeeccCCC--CeE
Confidence 57899999988877 5578866 999999886531 224567899999998865543 466
Q ss_pred ceeEE
Q 013634 433 KLQLT 437 (439)
Q Consensus 433 ~i~l~ 437 (439)
+|...
T Consensus 89 ~Ii~r 93 (143)
T 1d7q_A 89 DVILK 93 (143)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 55
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=50.52 E-value=24 Score=25.78 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=23.2
Q ss_pred eeCCceEEeeCceEEEEEEEecCCCCCCceeEE
Q 013634 405 KMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLT 437 (439)
Q Consensus 405 ~~~~~~~~~iGd~V~V~v~~vd~~~~~~~i~l~ 437 (439)
.++.+..+.+||-|+|+|..++. .+++|-
T Consensus 17 tRK~GEsI~IGddI~ItVl~i~g----~qVrLG 45 (73)
T 1vpz_A 17 TRRVGETLMVGDDVTVTVLGVKG----NQVRIG 45 (73)
T ss_dssp EEETTCEEEETTTEEEEEEEEET----TEEEEE
T ss_pred EccCCCEEEeCCCEEEEEEEEeC----CEEEEE
Confidence 36788999999999999999983 455543
No 56
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=47.96 E-value=6.4 Score=21.91 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=11.2
Q ss_pred cccchhhHHHHHH
Q 013634 287 PIRRYADVVVHRL 299 (439)
Q Consensus 287 PiRRY~DlvvHrq 299 (439)
-+||+.|.++-||
T Consensus 10 qlrr~gdkln~rq 22 (25)
T 3mqp_B 10 QLRRFGDKLNFRQ 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 4799999999887
No 57
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=45.69 E-value=26 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=18.9
Q ss_pred EEEEEEEECCCCceeEEEEEEeE
Q 013634 67 AFSVIWELTPEAEIISTRYTKSV 89 (439)
Q Consensus 67 a~s~~~~l~~~G~i~~~~~~~s~ 89 (439)
...+.|.||++|+|.+.++.+|.
T Consensus 26 ~V~v~~~i~~~G~v~~~~v~~ss 48 (90)
T 1u07_A 26 QVKVKFDVTPDGRVDNVQILSAK 48 (90)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecC
Confidence 46778899999999999886653
No 58
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=44.61 E-value=54 Score=22.46 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=29.6
Q ss_pred eEEEEEEEEEEc--CeEEEEEeCCceEEEEEcccCC
Q 013634 354 TDTEARIVKIRS--NGFIVFVPKFGIEGPVYLTPRG 387 (439)
Q Consensus 354 ~~~~g~V~~v~~--~g~~V~l~~~gveg~v~~~~l~ 387 (439)
..+.|+|.++.+ ..+.|.+.+||=...|+++++.
T Consensus 19 ~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr 54 (59)
T 1mhn_A 19 CIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLL 54 (59)
T ss_dssp CEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCB
T ss_pred CEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHee
Confidence 578999999985 6799999999999999988774
No 59
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=41.74 E-value=9.1 Score=21.70 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=11.6
Q ss_pred cccchhhHHHHHH
Q 013634 287 PIRRYADVVVHRL 299 (439)
Q Consensus 287 PiRRY~DlvvHrq 299 (439)
-+||+.|.++-||
T Consensus 10 qlr~~gdkln~rq 22 (27)
T 2jm6_A 10 QLRRIGDKVNLRQ 22 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 5799999999987
No 60
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=38.31 E-value=32 Score=26.59 Aligned_cols=22 Identities=0% Similarity=0.158 Sum_probs=18.5
Q ss_pred EEEEEEEECCCCceeEEEEEEe
Q 013634 67 AFSVIWELTPEAEIISTRYTKS 88 (439)
Q Consensus 67 a~s~~~~l~~~G~i~~~~~~~s 88 (439)
...+.|.||++|+|.+.++.+|
T Consensus 41 ~V~v~f~I~~~G~v~~~~v~~s 62 (106)
T 2k9k_A 41 FVTLSFTIDTTGKAVDINVVDA 62 (106)
T ss_dssp EEEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEEEc
Confidence 4677889999999999988665
No 61
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=35.54 E-value=90 Score=23.54 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=23.4
Q ss_pred eEEEEEEEEEEcCeE-EEEEeCCceEEEEEcccCCC
Q 013634 354 TDTEARIVKIRSNGF-IVFVPKFGIEGPVYLTPRGQ 388 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~-~V~l~~~gveg~v~~~~l~~ 388 (439)
....|+|.... .|+ |+.-++-+-+-++|++.+..
T Consensus 17 ~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~ 51 (89)
T 1wfq_A 17 LRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNG 51 (89)
T ss_dssp CEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSS
T ss_pred cccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhC
Confidence 35689988875 554 44444434899999998864
No 62
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=34.69 E-value=25 Score=27.09 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=23.5
Q ss_pred EeeCCceEEeeCceEEEEEEEecCCCCCCceeEE
Q 013634 404 VKMDGNLSYSVLQTVNIHMEVVEPQPNRPKLQLT 437 (439)
Q Consensus 404 ~~~~~~~~~~iGd~V~V~v~~vd~~~~~~~i~l~ 437 (439)
..++.+..+.+||-|+|+|..++. .+++|-
T Consensus 25 LtRK~GEsI~IGddI~ItVl~i~g----~qVrLG 54 (95)
T 1t3o_A 25 LSRKINEAIQIGADIEVKVIAVEG----DQVKLG 54 (95)
T ss_dssp EECTTCCCEEETTTEEECCCEECS----SCEEEE
T ss_pred EEccCCCeEEECCCEEEEEEEEeC----CEEEEE
Confidence 346788999999999999999883 455543
No 63
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=32.59 E-value=47 Score=25.10 Aligned_cols=51 Identities=8% Similarity=-0.079 Sum_probs=33.6
Q ss_pred eEEEEEEEEEEcCeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEE
Q 013634 354 TDTEARIVKIRSNGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 423 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~ 423 (439)
....|+|....+.--|+.-++-|-+-++|++.+..+ .+.++.||+|+..+.
T Consensus 17 ~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-------------------~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 17 KRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-------------------VDSLELGDMVEYSLS 67 (88)
T ss_dssp CCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-------------------TTTCCTTCEEEECCC
T ss_pred CceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-------------------cCcCCCCCEEEEEEE
Confidence 567899998874333444444358999999988643 234567777776654
No 64
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=32.32 E-value=90 Score=21.76 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=29.0
Q ss_pred eEEEEEEEEEEc--CeEEEEEeCCceEEEEEcccCC
Q 013634 354 TDTEARIVKIRS--NGFIVFVPKFGIEGPVYLTPRG 387 (439)
Q Consensus 354 ~~~~g~V~~v~~--~g~~V~l~~~gveg~v~~~~l~ 387 (439)
..+.|+|.++.+ ..+.|.+.+||=.-.|.++++.
T Consensus 24 ~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 24 QCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp SEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEE
T ss_pred CEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcE
Confidence 578999999986 5689999999999999887763
No 65
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.03 E-value=65 Score=21.54 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=26.0
Q ss_pred eEEEEEEEEEEcC--eEEEEEeCCceEEEEEcccC
Q 013634 354 TDTEARIVKIRSN--GFIVFVPKFGIEGPVYLTPR 386 (439)
Q Consensus 354 ~~~~g~V~~v~~~--g~~V~l~~~gveg~v~~~~l 386 (439)
..+.|.|.++.+. .+.|...+||=...|+++++
T Consensus 17 ~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~l 51 (54)
T 3s6w_A 17 KFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNI 51 (54)
T ss_dssp EEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGE
T ss_pred CEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHE
Confidence 5789999999753 48899999999988888765
No 66
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=31.59 E-value=52 Score=26.80 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=34.4
Q ss_pred eEEEEEEEEEEcCeEEEEEeC-CceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEE
Q 013634 354 TDTEARIVKIRSNGFIVFVPK-FGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHM 422 (439)
Q Consensus 354 ~~~~g~V~~v~~~g~~V~l~~-~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v 422 (439)
..|+|.|.++.++++.|.+.. ..-+-.|+++++--. +. ......+.+||+|+|--
T Consensus 16 ~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlp------P~--------~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 16 AFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLP------PP--------ADYNKEITEGDEVEVYS 71 (128)
T ss_dssp CEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECC------CC--------C----CCCTTCEEEEEE
T ss_pred CEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcC------CC--------cccccCCCCCCEEEEEe
Confidence 568999999999999999853 233455666554211 00 01235678899888854
No 67
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=30.94 E-value=1.4e+02 Score=20.92 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=33.6
Q ss_pred EEEEEEEEc-CeEEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEe
Q 013634 357 EARIVKIRS-NGFIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVV 425 (439)
Q Consensus 357 ~g~V~~v~~-~g~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~v 425 (439)
.|+|..... .|+-..-|+-|-+-++|.+.+... ..+.++.||+|+..+..-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~------------------g~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGE------------------GFKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSS------------------SCCCCCTTCEEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCccEEEEHHHcccc------------------CCCCCCCCCEEEEEEEEC
Confidence 578877764 343333355577889999988653 224567888888877653
No 68
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=30.61 E-value=9.7 Score=29.93 Aligned_cols=62 Identities=10% Similarity=-0.034 Sum_probs=41.5
Q ss_pred eEEEEEEEEEEcCe-EEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEecCCCCCC
Q 013634 354 TDTEARIVKIRSNG-FIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVEPQPNRP 432 (439)
Q Consensus 354 ~~~~g~V~~v~~~g-~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd~~~~~~ 432 (439)
....|.|+...+++ +.|.+++ |.+-++|++.. + +..-.+..||.|.|.+..-+. ..|.
T Consensus 20 ~e~~g~V~~~lgn~~~~V~l~n-G~~~la~i~GK-------m------------Rk~IwI~~GD~VlVe~~~yd~-~~Kg 78 (102)
T 1jt8_A 20 NEILGIIEQMLGASRVRVRCLD-GKTRLGRIPGR-------L------------KNRIWVREGDVVIVKPWEVQG-DQKC 78 (102)
T ss_dssp CCEEEEEECSSCSSEEEEEEET-TEEEEEECCHH-------H------------HHHHCCCSCEEEEECCBCCTT-SEEE
T ss_pred CEEEEEEEEEcCCCEEEEEECC-CCEEEEEEccc-------c------------eeeEEecCCCEEEEEeccCCC-CceE
Confidence 45789999887766 5688876 99988888642 1 124456889998888765441 1255
Q ss_pred ceeE
Q 013634 433 KLQL 436 (439)
Q Consensus 433 ~i~l 436 (439)
+|..
T Consensus 79 ~Iv~ 82 (102)
T 1jt8_A 79 DIIW 82 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 69
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=30.52 E-value=45 Score=23.96 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=31.7
Q ss_pred EEEEEEEEEEcCe-EEEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEE
Q 013634 355 DTEARIVKIRSNG-FIVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHME 423 (439)
Q Consensus 355 ~~~g~V~~v~~~g-~~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~ 423 (439)
.+.|.|+...++| +.|.+++ |-.-.++++.. + ++......+||.|.|.+.
T Consensus 7 ~~~G~Vi~~lg~~~y~V~~~~-g~~~~~~i~Gk-------~-----------Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 7 EMQGTVLETLPNTMFRVELEN-GHVVTAHISGK-------M-----------RKNYIRILTGDKVTVELT 57 (71)
T ss_dssp ECCEEEEEECSSSEEEEEETT-SCEEEEEECSS-------G-----------GGTTCCCCTTCEECCEEC
T ss_pred EEEEEEEEEeCCcEEEEEECC-CCEEEEEEcce-------E-----------eccCccCCCCCEEEEEEe
Confidence 4579999988844 5677755 65555555432 1 112244569999999865
No 70
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=28.54 E-value=92 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=29.5
Q ss_pred eEEEEEEEEEEc--CeEEEEEeCCceEEEEEcccCC
Q 013634 354 TDTEARIVKIRS--NGFIVFVPKFGIEGPVYLTPRG 387 (439)
Q Consensus 354 ~~~~g~V~~v~~--~g~~V~l~~~gveg~v~~~~l~ 387 (439)
..+.|+|+.+.. ..+.|.+.+||-...|.++++.
T Consensus 25 ~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr 60 (78)
T 2d9t_A 25 KFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIK 60 (78)
T ss_dssp CEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred CEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeE
Confidence 578999999986 5689999999999999988764
No 71
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=28.38 E-value=1.1e+02 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.075 Sum_probs=30.8
Q ss_pred eEEEEEEEEEEc--CeEEEEEeCCceEEEEEcccCCC
Q 013634 354 TDTEARIVKIRS--NGFIVFVPKFGIEGPVYLTPRGQ 388 (439)
Q Consensus 354 ~~~~g~V~~v~~--~g~~V~l~~~gveg~v~~~~l~~ 388 (439)
..+.|+|..+.. ..+.|.+.+||=.-.|.+++|..
T Consensus 26 ~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp 62 (88)
T 1g5v_A 26 CIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLS 62 (88)
T ss_dssp CEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBC
T ss_pred CEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHccc
Confidence 578999999986 67999999999999999988754
No 72
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=27.15 E-value=52 Score=26.71 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=16.4
Q ss_pred EEEEEEEECCCCceeEEEEE
Q 013634 67 AFSVIWELTPEAEIISTRYT 86 (439)
Q Consensus 67 a~s~~~~l~~~G~i~~~~~~ 86 (439)
...|.|+|+.+|.|.++++.
T Consensus 53 ~~~V~v~l~~dG~v~~v~v~ 72 (129)
T 1lr0_A 53 SVEVLIEMLPDGTITNASVS 72 (129)
T ss_dssp CEEEEEEECTTSBEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEe
Confidence 46778899999999997664
No 73
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=25.49 E-value=85 Score=23.55 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.1
Q ss_pred eEEEEEEEEEEcC-eEEEEEeCCceEEEEEcccCC
Q 013634 354 TDTEARIVKIRSN-GFIVFVPKFGIEGPVYLTPRG 387 (439)
Q Consensus 354 ~~~~g~V~~v~~~-g~~V~l~~~gveg~v~~~~l~ 387 (439)
.++.|.|+++.+. .+.|.+.+||-...|..+++-
T Consensus 43 ~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr 77 (94)
T 3fdr_A 43 SWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLR 77 (94)
T ss_dssp EEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCE
T ss_pred eEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhh
Confidence 5789999999764 689999999999999988764
No 74
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=25.03 E-value=1e+02 Score=22.48 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=29.1
Q ss_pred eEEEEEEEEEEcC--eEEEEEeCCceEEEEEcccCCC
Q 013634 354 TDTEARIVKIRSN--GFIVFVPKFGIEGPVYLTPRGQ 388 (439)
Q Consensus 354 ~~~~g~V~~v~~~--g~~V~l~~~gveg~v~~~~l~~ 388 (439)
..+.|+|+++... .+.|...+||-...|.++++..
T Consensus 33 ~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~ 69 (77)
T 3pnw_C 33 KFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKP 69 (77)
T ss_dssp EEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEC
T ss_pred CEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEE
Confidence 5789999999754 4889999999999999887643
No 75
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=24.83 E-value=1.5e+02 Score=21.23 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=21.7
Q ss_pred EEEEEEEEc-CeEEEEEeCCceEEEEEcccCCCC
Q 013634 357 EARIVKIRS-NGFIVFVPKFGIEGPVYLTPRGQK 389 (439)
Q Consensus 357 ~g~V~~v~~-~g~~V~l~~~gveg~v~~~~l~~~ 389 (439)
.|+|..... .|+-..-|+-|-+-++|.+.+...
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~ 36 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAK 36 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSS
T ss_pred CEEEEEEECCCCEEEEecCCCCcEEEEhhhcccc
Confidence 578877764 343333355578889999988653
No 76
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=21.19 E-value=1.2e+02 Score=22.20 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=13.8
Q ss_pred eEEeeCceEEEEEEEec
Q 013634 410 LSYSVLQTVNIHMEVVE 426 (439)
Q Consensus 410 ~~~~iGd~V~V~v~~vd 426 (439)
..++.||.|++.+...+
T Consensus 52 ~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp CCCCTTCEEEEEEEEET
T ss_pred hcCCCCCEEEEEEEEeC
Confidence 45899999999987655
No 77
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=20.91 E-value=2.3e+02 Score=20.07 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=34.8
Q ss_pred EEEEEEEEEEc-CeE-EEEEeCCceEEEEEcccCCCCCCCceeecCCeEEEEeeCCceEEeeCceEEEEEEEec
Q 013634 355 DTEARIVKIRS-NGF-IVFVPKFGIEGPVYLTPRGQKGSGDWYVDEQQQKIVKMDGNLSYSVLQTVNIHMEVVE 426 (439)
Q Consensus 355 ~~~g~V~~v~~-~g~-~V~l~~~gveg~v~~~~l~~~~~~~~~~d~~~~~l~~~~~~~~~~iGd~V~V~v~~vd 426 (439)
...|+|..... .|+ |+.-++-+-+-++|.+.+... ..+.++.||.|+..+..-+
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~------------------g~~~l~~G~~V~f~~~~~~ 60 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN------------------GFKTLAEGQRVEFEITNGA 60 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS------------------SCCCCCTTCEEEEEEEEET
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc------------------cCcCCCCCCEEEEEEEECC
Confidence 45788887754 333 333334347889999988643 1245678888888876543
No 78
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.67 E-value=1.2e+02 Score=22.65 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=13.9
Q ss_pred eEEeeCceEEEEEEEec
Q 013634 410 LSYSVLQTVNIHMEVVE 426 (439)
Q Consensus 410 ~~~~iGd~V~V~v~~vd 426 (439)
..++.||+|++.+...+
T Consensus 60 ~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 60 SEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp CCCCTTCEEEEEEEEET
T ss_pred hcCCCCCEEEEEEEEeC
Confidence 45799999999987655
Done!