Query 013637
Match_columns 439
No_of_seqs 382 out of 2603
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02469 hydroxyacylglutathion 99.9 2.6E-26 5.7E-31 222.6 22.0 165 203-393 7-180 (258)
2 PLN02398 hydroxyacylglutathion 99.9 2.9E-26 6.3E-31 228.0 20.6 152 230-393 98-250 (329)
3 TIGR03413 GSH_gloB hydroxyacyl 99.9 1.5E-25 3.3E-30 216.3 19.4 149 230-393 20-170 (248)
4 PLN02962 hydroxyacylglutathion 99.9 1.1E-24 2.4E-29 210.0 21.2 149 230-389 36-193 (251)
5 PRK11921 metallo-beta-lactamas 99.9 1.6E-24 3.5E-29 222.7 23.3 211 186-403 2-240 (394)
6 PRK10241 hydroxyacylglutathion 99.9 6.4E-25 1.4E-29 212.4 17.3 147 230-392 22-170 (251)
7 PRK05452 anaerobic nitric oxid 99.9 1.2E-23 2.7E-28 220.5 23.4 216 185-406 3-247 (479)
8 KOG0813 Glyoxylase [General fu 99.9 8.2E-23 1.8E-27 194.7 15.6 151 231-391 26-181 (265)
9 COG0426 FpaA Uncharacterized f 99.9 3.5E-21 7.6E-26 192.6 21.3 214 182-403 2-239 (388)
10 COG0491 GloB Zn-dependent hydr 99.9 2.8E-20 6.2E-25 176.7 20.1 158 231-389 36-212 (252)
11 smart00849 Lactamase_B Metallo 99.8 8.9E-19 1.9E-23 158.9 19.2 155 230-387 15-183 (183)
12 PF00753 Lactamase_B: Metallo- 99.8 3.5E-19 7.7E-24 161.2 14.0 158 230-387 15-194 (194)
13 KOG0814 Glyoxylase [General fu 99.8 1.1E-18 2.4E-23 154.2 10.2 150 229-389 31-183 (237)
14 PF14597 Lactamase_B_5: Metall 99.7 5.8E-17 1.3E-21 144.9 16.0 158 230-401 32-195 (199)
15 TIGR00649 MG423 conserved hypo 99.5 3.8E-13 8.2E-18 139.8 16.3 135 217-351 8-162 (422)
16 COG2015 Alkyl sulfatase and re 99.3 1.1E-11 2.4E-16 125.1 12.2 213 185-419 111-378 (655)
17 PRK00685 metal-dependent hydro 99.3 6.9E-11 1.5E-15 112.3 14.4 156 230-391 17-196 (228)
18 COG0595 mRNA degradation ribon 99.2 5.3E-11 1.1E-15 125.9 13.2 135 217-351 16-170 (555)
19 PRK11539 ComEC family competen 99.2 2.1E-10 4.6E-15 127.3 17.3 109 230-348 520-640 (755)
20 TIGR03675 arCOG00543 arCOG0054 99.2 5.4E-11 1.2E-15 128.7 10.3 134 216-350 181-349 (630)
21 COG1237 Metal-dependent hydrol 99.2 8.9E-10 1.9E-14 104.7 16.3 167 222-389 21-232 (259)
22 TIGR02651 RNase_Z ribonuclease 99.1 2E-10 4.3E-15 113.7 10.7 106 230-338 27-147 (299)
23 PRK02113 putative hydrolase; P 99.1 1.2E-09 2.5E-14 105.6 15.2 113 230-349 44-171 (252)
24 TIGR00361 ComEC_Rec2 DNA inter 99.1 2.1E-09 4.6E-14 117.8 19.0 113 230-348 459-583 (662)
25 TIGR02649 true_RNase_BN ribonu 99.1 3.5E-10 7.6E-15 112.5 11.4 105 231-338 31-149 (303)
26 PRK11244 phnP carbon-phosphoru 99.1 1.7E-09 3.6E-14 104.6 14.8 112 230-349 46-164 (250)
27 TIGR03307 PhnP phosphonate met 99.1 1.6E-09 3.4E-14 104.0 14.0 112 230-349 36-154 (238)
28 PRK05184 pyrroloquinoline quin 99.0 2.2E-09 4.8E-14 106.8 12.4 114 232-348 51-199 (302)
29 TIGR02108 PQQ_syn_pqqB coenzym 99.0 2.1E-09 4.6E-14 106.8 11.5 115 231-348 49-199 (302)
30 PF12706 Lactamase_B_2: Beta-l 99.0 6.5E-10 1.4E-14 102.3 6.7 116 232-350 2-140 (194)
31 PRK02126 ribonuclease Z; Provi 99.0 6.7E-09 1.5E-13 104.6 13.4 114 206-338 15-172 (334)
32 PRK04286 hypothetical protein; 98.9 5.4E-09 1.2E-13 103.8 11.0 120 230-349 24-187 (298)
33 PRK11709 putative L-ascorbate 98.9 3.3E-08 7.2E-13 100.2 14.6 155 254-409 107-307 (355)
34 COG2333 ComEC Predicted hydrol 98.9 3.2E-08 6.9E-13 97.4 13.4 118 230-348 63-191 (293)
35 COG1236 YSH1 Predicted exonucl 98.8 5.5E-09 1.2E-13 108.6 6.5 127 222-349 13-165 (427)
36 COG1782 Predicted metal-depend 98.7 1.4E-07 3E-12 96.5 11.4 133 217-350 188-355 (637)
37 PRK00055 ribonuclease Z; Revie 98.6 7.8E-08 1.7E-12 93.3 8.2 64 230-295 29-98 (270)
38 KOG4736 Uncharacterized conser 98.6 6.3E-08 1.4E-12 93.2 7.0 147 230-392 104-259 (302)
39 PF13483 Lactamase_B_3: Beta-l 98.4 1.8E-06 3.9E-11 77.8 9.2 93 230-350 16-116 (163)
40 COG2220 Predicted Zn-dependent 98.3 8.6E-06 1.9E-10 79.1 12.7 160 230-389 23-213 (258)
41 TIGR02650 RNase_Z_T_toga ribon 98.2 4E-06 8.6E-11 81.7 8.9 103 221-329 9-134 (277)
42 COG2248 Predicted hydrolase (m 97.8 0.00026 5.6E-09 67.3 12.4 164 226-389 19-248 (304)
43 KOG1136 Predicted cleavage and 97.8 3E-05 6.5E-10 76.0 6.4 128 221-349 15-180 (501)
44 COG1234 ElaC Metal-dependent h 97.8 0.00013 2.8E-09 72.4 9.8 65 229-295 28-98 (292)
45 PF00293 NUDIX: NUDIX domain; 97.7 5E-05 1.1E-09 65.1 5.6 114 6-152 5-124 (134)
46 COG1235 PhnP Metal-dependent h 97.7 6.1E-05 1.3E-09 73.7 6.7 56 230-291 40-96 (269)
47 KOG1135 mRNA cleavage and poly 97.6 0.0005 1.1E-08 73.1 11.1 127 221-348 13-172 (764)
48 KOG1137 mRNA cleavage and poly 97.4 0.00032 7E-09 72.9 6.3 129 220-349 24-183 (668)
49 PF02112 PDEase_II: cAMP phosp 97.0 0.0042 9.2E-08 62.5 9.5 89 209-297 3-125 (335)
50 cd04700 DR1025_like DR1025 fro 96.9 0.0034 7.3E-08 55.3 7.8 108 8-152 18-130 (142)
51 cd04664 Nudix_Hydrolase_7 Memb 96.9 0.0051 1.1E-07 52.8 8.7 111 7-149 5-120 (129)
52 cd04666 Nudix_Hydrolase_9 Memb 96.9 0.0041 8.9E-08 53.4 7.8 98 16-149 14-117 (122)
53 cd03428 Ap4A_hydrolase_human_l 96.9 0.0038 8.3E-08 53.5 7.5 106 7-149 6-117 (130)
54 cd03424 ADPRase_NUDT5 ADP-ribo 96.9 0.0044 9.5E-08 53.7 7.9 109 7-152 6-120 (137)
55 cd03673 Ap6A_hydrolase Diadeno 96.8 0.0075 1.6E-07 51.4 9.0 108 7-149 5-118 (131)
56 cd04661 MRP_L46 Mitochondrial 96.6 0.0075 1.6E-07 52.4 7.5 104 14-149 10-122 (132)
57 cd04691 Nudix_Hydrolase_32 Mem 96.6 0.0092 2E-07 50.5 7.9 98 17-149 11-110 (117)
58 cd03672 Dcp2p mRNA decapping e 96.6 0.0069 1.5E-07 53.7 7.2 106 6-151 4-115 (145)
59 cd04683 Nudix_Hydrolase_24 Mem 96.5 0.0087 1.9E-07 50.5 7.1 101 17-149 11-116 (120)
60 cd03430 GDPMH GDP-mannose glyc 96.5 0.014 3E-07 51.5 8.5 108 6-146 15-131 (144)
61 cd04690 Nudix_Hydrolase_31 Mem 96.5 0.011 2.5E-07 49.6 7.5 94 17-144 12-107 (118)
62 KOG1361 Predicted hydrolase in 96.5 0.004 8.6E-08 64.9 5.5 89 256-348 112-205 (481)
63 cd03426 CoAse Coenzyme A pyrop 96.4 0.0088 1.9E-07 53.6 6.7 108 7-147 6-118 (157)
64 cd04679 Nudix_Hydrolase_20 Mem 96.3 0.017 3.7E-07 49.2 8.0 105 7-148 6-116 (125)
65 cd04696 Nudix_Hydrolase_37 Mem 96.3 0.022 4.7E-07 48.6 8.6 106 6-146 5-113 (125)
66 cd03427 MTH1 MutT homolog-1 (M 96.3 0.014 3.1E-07 50.4 7.4 96 17-146 12-110 (137)
67 cd04684 Nudix_Hydrolase_25 Con 96.2 0.02 4.3E-07 48.6 7.8 99 17-146 11-116 (128)
68 cd04687 Nudix_Hydrolase_28 Mem 96.2 0.021 4.6E-07 48.9 7.8 106 5-145 3-119 (128)
69 TIGR00052 nudix-type nucleosid 96.2 0.013 2.8E-07 54.2 6.6 107 16-152 56-170 (185)
70 PRK15434 GDP-mannose mannosyl 96.1 0.027 5.9E-07 50.8 8.2 107 6-146 20-136 (159)
71 cd04678 Nudix_Hydrolase_19 Mem 96.0 0.038 8.2E-07 47.3 8.2 106 6-147 5-117 (129)
72 PRK09438 nudB dihydroneopterin 95.9 0.035 7.6E-07 48.9 7.9 104 6-148 10-130 (148)
73 cd03675 Nudix_Hydrolase_2 Cont 95.9 0.044 9.6E-07 47.2 8.3 106 6-149 3-113 (134)
74 cd04688 Nudix_Hydrolase_29 Mem 95.8 0.038 8.2E-07 47.1 7.5 103 4-145 2-116 (126)
75 cd04695 Nudix_Hydrolase_36 Mem 95.8 0.047 1E-06 47.1 8.0 98 16-148 13-115 (131)
76 cd04673 Nudix_Hydrolase_15 Mem 95.7 0.044 9.6E-07 46.0 7.6 100 17-147 11-114 (122)
77 cd04693 Nudix_Hydrolase_34 Mem 95.7 0.071 1.5E-06 45.5 8.9 109 8-152 5-118 (127)
78 cd02883 Nudix_Hydrolase Nudix 95.6 0.043 9.4E-07 45.4 7.1 103 7-146 4-111 (123)
79 PRK15009 GDP-mannose pyrophosp 95.6 0.062 1.3E-06 50.0 8.7 113 9-152 51-171 (191)
80 cd04682 Nudix_Hydrolase_23 Mem 95.6 0.062 1.4E-06 45.6 8.1 100 17-149 12-116 (122)
81 cd04694 Nudix_Hydrolase_35 Mem 95.6 0.072 1.6E-06 47.1 8.6 116 5-151 3-135 (143)
82 PRK10729 nudF ADP-ribose pyrop 95.6 0.06 1.3E-06 50.5 8.5 106 17-152 62-176 (202)
83 cd04672 Nudix_Hydrolase_14 Mem 95.5 0.055 1.2E-06 46.0 7.4 94 17-144 13-109 (123)
84 KOG3798 Predicted Zn-dependent 95.5 0.045 9.7E-07 52.3 7.2 102 250-351 126-242 (343)
85 PRK11762 nudE adenosine nucleo 95.5 0.079 1.7E-06 48.8 8.8 102 16-152 58-164 (185)
86 cd04680 Nudix_Hydrolase_21 Mem 95.4 0.058 1.3E-06 45.2 7.2 100 6-146 3-107 (120)
87 PRK00714 RNA pyrophosphohydrol 95.4 0.036 7.8E-07 49.7 6.1 109 7-150 12-138 (156)
88 cd04681 Nudix_Hydrolase_22 Mem 95.3 0.065 1.4E-06 45.8 7.2 104 5-144 3-112 (130)
89 cd04686 Nudix_Hydrolase_27 Mem 95.2 0.079 1.7E-06 45.8 7.5 95 17-147 11-119 (131)
90 cd03671 Ap4A_hydrolase_plant_l 95.1 0.081 1.8E-06 46.6 7.4 107 7-149 7-133 (147)
91 cd04676 Nudix_Hydrolase_17 Mem 94.9 0.083 1.8E-06 44.6 6.7 105 5-146 4-116 (129)
92 KOG2121 Predicted metal-depend 94.9 0.019 4.1E-07 62.2 3.1 46 232-278 473-523 (746)
93 cd03429 NADH_pyrophosphatase N 94.8 0.14 3.1E-06 44.1 8.0 92 17-147 12-107 (131)
94 PRK10546 pyrimidine (deoxy)nuc 94.6 0.2 4.3E-06 43.1 8.4 104 5-146 6-111 (135)
95 cd04511 Nudix_Hydrolase_4 Memb 94.6 0.18 3.9E-06 43.3 8.0 91 16-144 23-116 (130)
96 PF14234 DUF4336: Domain of un 94.5 0.19 4.2E-06 49.3 8.9 122 230-351 30-161 (285)
97 cd02885 IPP_Isomerase Isopente 94.4 0.24 5.2E-06 44.6 8.7 112 7-151 34-152 (165)
98 cd04689 Nudix_Hydrolase_30 Mem 94.3 0.22 4.7E-06 42.3 7.9 99 5-143 3-110 (125)
99 cd04671 Nudix_Hydrolase_13 Mem 94.2 0.22 4.7E-06 42.6 7.6 100 4-144 1-107 (123)
100 cd04692 Nudix_Hydrolase_33 Mem 94.2 0.32 7E-06 42.5 8.8 113 10-153 9-133 (144)
101 cd04699 Nudix_Hydrolase_39 Mem 94.1 0.29 6.3E-06 41.4 8.2 105 6-144 4-111 (129)
102 cd04669 Nudix_Hydrolase_11 Mem 94.0 0.16 3.5E-06 43.1 6.4 97 5-144 2-111 (121)
103 cd04670 Nudix_Hydrolase_12 Mem 93.9 0.25 5.4E-06 42.0 7.5 102 6-146 5-112 (127)
104 cd04677 Nudix_Hydrolase_18 Mem 93.6 0.19 4.1E-06 42.9 6.3 99 17-150 19-125 (132)
105 cd03425 MutT_pyrophosphohydrol 93.5 0.42 9.1E-06 39.7 8.1 93 17-145 13-108 (124)
106 cd04697 Nudix_Hydrolase_38 Mem 93.0 0.9 2E-05 38.7 9.5 102 17-152 12-117 (126)
107 cd03674 Nudix_Hydrolase_1 Memb 92.9 0.58 1.3E-05 40.7 8.2 95 17-146 15-122 (138)
108 cd04667 Nudix_Hydrolase_10 Mem 92.8 0.45 9.7E-06 39.6 7.1 88 16-147 10-101 (112)
109 PRK15472 nucleoside triphospha 92.6 0.54 1.2E-05 40.9 7.6 99 17-146 15-124 (141)
110 PRK05379 bifunctional nicotina 92.5 0.44 9.5E-06 48.3 7.9 99 17-147 214-322 (340)
111 TIGR02150 IPP_isom_1 isopenten 92.3 0.9 2E-05 40.6 8.9 72 79-152 71-147 (158)
112 COG5212 PDE1 Low-affinity cAMP 92.0 0.25 5.4E-06 47.9 5.0 91 257-348 113-232 (356)
113 PRK15393 NUDIX hydrolase YfcD; 91.3 1.3 2.9E-05 40.5 9.0 109 8-152 42-154 (180)
114 PRK03759 isopentenyl-diphospha 91.3 1.3 2.9E-05 40.6 9.0 85 78-165 79-167 (184)
115 PLN02325 nudix hydrolase 91.2 1 2.2E-05 39.7 7.8 95 17-144 20-122 (144)
116 PRK10776 nucleoside triphospha 90.6 1.7 3.8E-05 36.4 8.5 101 7-145 8-111 (129)
117 PF13691 Lactamase_B_4: tRNase 90.2 0.64 1.4E-05 35.2 4.7 48 223-272 13-63 (63)
118 TIGR00586 mutt mutator mutT pr 90.0 1.9 4.1E-05 36.3 8.2 92 17-144 16-110 (128)
119 cd04665 Nudix_Hydrolase_8 Memb 88.1 1.5 3.3E-05 37.3 6.2 86 17-142 11-100 (118)
120 cd03676 Nudix_hydrolase_3 Memb 88.1 2.9 6.4E-05 38.0 8.6 73 78-152 81-163 (180)
121 PRK00241 nudC NADH pyrophospha 87.1 1.5 3.3E-05 42.6 6.3 90 16-144 142-235 (256)
122 PLN03143 nudix hydrolase; Prov 86.8 1.8 3.9E-05 42.9 6.7 103 18-152 144-270 (291)
123 cd03670 ADPRase_NUDT9 ADP-ribo 86.0 1.9 4.1E-05 39.9 6.0 103 9-145 41-169 (186)
124 cd04685 Nudix_Hydrolase_26 Mem 84.9 5.3 0.00012 34.6 8.1 99 17-146 12-122 (133)
125 PRK08999 hypothetical protein; 83.4 5.4 0.00012 39.6 8.5 101 6-143 8-110 (312)
126 PRK10707 putative NUDIX hydrol 83.0 4.8 0.0001 37.3 7.4 99 16-147 43-146 (190)
127 cd04662 Nudix_Hydrolase_5 Memb 82.8 5.1 0.00011 34.7 6.9 95 16-140 14-125 (126)
128 KOG3592 Microtubule-associated 79.1 2.1 4.5E-05 46.8 3.8 66 207-278 38-103 (934)
129 TIGR02705 nudix_YtkD nucleosid 78.2 11 0.00024 33.9 7.7 108 16-163 34-143 (156)
130 cd04674 Nudix_Hydrolase_16 Mem 77.2 5 0.00011 34.2 5.1 79 41-144 28-112 (118)
131 cd04663 Nudix_Hydrolase_6 Memb 72.6 8.7 0.00019 33.2 5.4 103 5-146 2-115 (126)
132 COG1051 ADP-ribose pyrophospha 71.7 22 0.00048 31.3 8.0 93 18-145 22-120 (145)
133 PLN02709 nudix hydrolase 69.2 21 0.00045 34.0 7.6 96 16-146 50-154 (222)
134 cd03431 DNA_Glycosylase_C DNA 58.1 81 0.0017 25.5 8.6 29 114-143 73-101 (118)
135 PLN02552 isopentenyl-diphospha 53.4 39 0.00083 32.8 6.5 74 78-151 118-207 (247)
136 cd02791 MopB_CT_Nitrate-R-NapA 50.1 1.1E+02 0.0024 25.4 8.2 62 264-335 15-81 (122)
137 cd00508 MopB_CT_Fdh-Nap-like T 44.4 1.8E+02 0.0038 23.8 8.6 55 272-336 24-82 (120)
138 PF03823 Neurokinin_B: Neuroki 39.4 9.3 0.0002 28.0 -0.1 21 36-56 36-56 (59)
139 PLN02791 Nudix hydrolase homol 38.1 1.3E+02 0.0028 34.1 8.3 72 79-151 79-162 (770)
140 cd05560 Xcc1710_like Xcc1710_l 37.4 74 0.0016 26.6 5.0 38 369-406 42-79 (109)
141 cd02786 MopB_CT_3 The MopB_CT_ 36.4 2.4E+02 0.0052 23.1 8.1 54 272-335 20-77 (116)
142 PRK13516 gamma-glutamyl:cystei 33.1 31 0.00067 35.5 2.5 124 23-153 7-156 (373)
143 cd02782 MopB_CT_1 The MopB_CT_ 33.0 2.3E+02 0.005 23.7 7.6 56 270-335 20-79 (129)
144 cd02790 MopB_CT_Formate-Dh_H F 32.3 1.8E+02 0.0038 23.8 6.6 68 259-336 5-82 (116)
145 PRK13518 carboxylate-amine lig 32.2 38 0.00081 34.7 2.8 97 53-152 50-156 (357)
146 KOG3904 Predicted hydrolase RP 29.9 9 0.0002 35.6 -1.8 68 78-147 72-144 (209)
147 cd02792 MopB_CT_Formate-Dh-Na- 27.0 3.5E+02 0.0077 22.2 8.9 68 259-336 5-82 (122)
148 KOG4432 Uncharacterized NUDIX 26.2 1.1E+02 0.0024 30.3 4.7 135 6-150 232-379 (405)
149 cd02778 MopB_CT_Thiosulfate-R- 24.9 3.9E+02 0.0085 22.0 8.5 57 271-337 18-78 (123)
150 cd00248 Mth938-like Mth938-lik 24.0 1.6E+02 0.0035 24.5 4.9 38 369-406 41-79 (109)
151 TIGR02050 gshA_cyan_rel unchar 23.8 55 0.0012 32.3 2.3 97 54-152 38-143 (287)
152 cd02787 MopB_CT_ydeP The MopB_ 21.4 3.4E+02 0.0074 22.1 6.4 56 282-347 30-94 (112)
153 cd02794 MopB_CT_DmsA-EC The Mo 21.1 4.8E+02 0.01 21.5 8.2 54 271-335 19-76 (121)
154 cd02785 MopB_CT_4 The MopB_CT_ 20.8 4.9E+02 0.011 21.6 8.5 55 271-335 20-78 (124)
155 cd02781 MopB_CT_Acetylene-hydr 20.7 5E+02 0.011 21.6 7.6 54 272-335 22-79 (130)
No 1
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.95 E-value=2.6e-26 Score=222.57 Aligned_cols=165 Identities=21% Similarity=0.295 Sum_probs=128.0
Q ss_pred Cccccc-EEEEccCCCCCCCCceEEEecCCeEEEcCCCCCcHHHHHHHHHHcCC-CccEEEeCCCchhhhcChHHHHHhC
Q 013637 203 PFLTTN-LIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCN 280 (439)
Q Consensus 203 p~~~~N-~y~i~~~~g~~~~~~s~~vi~g~~vLID~G~~~~~~~~l~~~~~~~~-~i~~VilTH~H~DHigG~~~l~~~~ 280 (439)
|...+| +|+|.++. +++++|||||... .+.+.+++.+ .+.+|++||.|+||+||+..|++.+
T Consensus 7 ~~~~dNy~Yli~d~~------------~~~~vlIDp~~~~----~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~ 70 (258)
T PLN02469 7 PCLEDNYAYLIIDES------------TKDAAVVDPVDPE----KVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV 70 (258)
T ss_pred ccccceEEEEEEeCC------------CCeEEEECCCChH----HHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHC
Confidence 344566 67775432 2469999999543 3334444433 4669999999999999999999999
Q ss_pred CCCEEEeCHhHHHHhccCCCCCCceecCCCceEEECC-eEEEEEeCCCCCCCCEEEEECC----ccEEEEccccccCccc
Q 013637 281 PDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICVGG-QRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSA 355 (439)
Q Consensus 281 p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~lGg-~~l~vi~tpGHt~g~~~l~~~~----~~iLftGD~l~~~~~~ 355 (439)
|+++||++..+. + ......+.+|+++.+|+ ..+++++|||||+||++|++++ .++|||||++|..+++
T Consensus 71 ~~~~V~~~~~~~--~-----~~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~G 143 (258)
T PLN02469 71 PGIKVYGGSLDN--V-----KGCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCG 143 (258)
T ss_pred CCCEEEEechhc--C-----CCCCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcC
Confidence 899999986431 1 11235688999999986 6899999999999999999963 3699999999987776
Q ss_pred ccccCCCCCHHHHHHHHHH-HHcCCCCE-EEeCCCCCCCC
Q 013637 356 VLDITAGGNMTDYFQSTYK-FLELSPHA-LIPMHGRVNLW 393 (439)
Q Consensus 356 ~~~~~~~~~~~~~~~sL~r-L~~l~~~~-IvPgHG~~~~~ 393 (439)
.+ ++++..++++|+++ +..++.++ |+||||+...+
T Consensus 144 r~---~~g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~n 180 (258)
T PLN02469 144 KF---FEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKN 180 (258)
T ss_pred CC---CCCCHHHHHHHHHHHHHcCCCCeEEEcCCCCchhH
Confidence 64 67899999999985 66787765 99999997663
No 2
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.94 E-value=2.9e-26 Score=227.97 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=125.8
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~ 309 (439)
+.+++||||....+.+.+.+ .-..+++|++||.|+||+||+..|++.+ +++||++..+.+.+.. ....+.+
T Consensus 98 ~~~~vVDP~~a~~vl~~l~~---~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~~~i~~-----~d~~v~d 168 (329)
T PLN02398 98 GTVGVVDPSEAVPVIDALSR---KNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDKDRIPG-----IDIVLKD 168 (329)
T ss_pred CEEEEEcCCCHHHHHHHHHh---cCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHhhhccC-----CcEEeCC
Confidence 45899999976543333322 2234669999999999999999999987 7999999887655432 2467889
Q ss_pred CceEEECCeEEEEEeCCCCCCCCEEEEECCccEEEEccccccCcccccccCCCCCHHHHHHHHHHHHcCCCCE-EEeCCC
Q 013637 310 SEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMHG 388 (439)
Q Consensus 310 g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~~~iLftGD~l~~~~~~~~~~~~~~~~~~~~~sL~rL~~l~~~~-IvPgHG 388 (439)
|+++.+|+.+++++++||||+||++|++++.++||+||+++..+.+.+ +.++.+++++||++|.+++.++ |+||||
T Consensus 169 Gd~i~lgg~~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~---feg~~~~~~~SL~rL~~L~~~t~VypGHg 245 (329)
T PLN02398 169 GDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKL---FEGTPEQMLSSLQKIISLPDDTNIYCGHE 245 (329)
T ss_pred CCEEEECCeEEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEEECCCC
Confidence 999999999999999999999999999988899999999997766554 6789999999999999999887 889999
Q ss_pred CCCCC
Q 013637 389 RVNLW 393 (439)
Q Consensus 389 ~~~~~ 393 (439)
+...+
T Consensus 246 yt~~N 250 (329)
T PLN02398 246 YTLSN 250 (329)
T ss_pred Chhcc
Confidence 97653
No 3
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.94 E-value=1.5e-25 Score=216.33 Aligned_cols=149 Identities=25% Similarity=0.379 Sum_probs=123.4
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCC-CccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~-~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~ 308 (439)
++++|||||....+. +.+++.+ .+++|++||.|+||+||+..+++.+ +++||+++.+ .+ ......+.
T Consensus 20 ~~~ilID~g~~~~i~----~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~-~~~V~~~~~~--~~-----~~~~~~v~ 87 (248)
T TIGR03413 20 GQAAVVDPGEAEPVL----DALEARGLTLTAILLTHHHHDHVGGVAELLEAF-PAPVYGPAEE--RI-----PGITHPVK 87 (248)
T ss_pred CCEEEEcCCChHHHH----HHHHHcCCeeeEEEeCCCCccccCCHHHHHHHC-CCeEEecccc--cC-----CCCcEEeC
Confidence 369999999764333 3333333 4569999999999999999999988 4999998764 11 22346788
Q ss_pred CCceEEECCeEEEEEeCCCCCCCCEEEEECCccEEEEccccccCcccccccCCCCCHHHHHHHHHHHHcCCCCE-EEeCC
Q 013637 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMH 387 (439)
Q Consensus 309 ~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~~~iLftGD~l~~~~~~~~~~~~~~~~~~~~~sL~rL~~l~~~~-IvPgH 387 (439)
+|+.+.+|+.+++++++||||+||++|++++.++||+||+++..+++.+ ..++.++|++|++++++++.++ |+|||
T Consensus 88 ~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~---~~~~~~~~~~Sl~~l~~l~~~~~i~pGH 164 (248)
T TIGR03413 88 DGDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRL---FEGTPEQMYDSLQRLAALPDDTLVYCAH 164 (248)
T ss_pred CCCEEEECCEEEEEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCC---CCCCHHHHHHHHHHHHcCCCCeEEECCC
Confidence 9999999999999999999999999999998899999999987766554 5679999999999999999987 89999
Q ss_pred CCCCCC
Q 013637 388 GRVNLW 393 (439)
Q Consensus 388 G~~~~~ 393 (439)
|+...+
T Consensus 165 ~~~~~n 170 (248)
T TIGR03413 165 EYTLSN 170 (248)
T ss_pred CchHHH
Confidence 987653
No 4
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.93 E-value=1.1e-24 Score=210.03 Aligned_cols=149 Identities=24% Similarity=0.382 Sum_probs=120.4
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCC-CccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~-~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~ 308 (439)
++++|||||.... ..+.+.+++.+ .+.+|++||.|.||++|+..+++++|++++++++.. .. .....++
T Consensus 36 ~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~-------~~-~~d~~l~ 105 (251)
T PLN02962 36 KPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS-------GS-KADLFVE 105 (251)
T ss_pred CEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc-------CC-CCCEEeC
Confidence 4689999985322 23344555444 456999999999999999999998889999997532 11 1234588
Q ss_pred CCceEEECCeEEEEEeCCCCCCCCEEEEECC------ccEEEEccccccCcccccccCCCCCHHHHHHHHH-HHHcCCCC
Q 013637 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHAS------TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTY-KFLELSPH 381 (439)
Q Consensus 309 ~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~------~~iLftGD~l~~~~~~~~~~~~~~~~~~~~~sL~-rL~~l~~~ 381 (439)
+|+++.+|+.++++++|||||+|+++|++++ .+++|+||++|..+.++.+. ++++..++++|++ +|..++++
T Consensus 106 ~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~-~~g~~~~l~~Sl~~~l~~L~~~ 184 (251)
T PLN02962 106 PGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDF-QGGSSDQLYKSVHSQIFTLPKD 184 (251)
T ss_pred CCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCC-CCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999853 36999999999887777654 6789999999996 78899888
Q ss_pred E-EEeCCCC
Q 013637 382 A-LIPMHGR 389 (439)
Q Consensus 382 ~-IvPgHG~ 389 (439)
+ |+||||+
T Consensus 185 ~~i~PGHg~ 193 (251)
T PLN02962 185 TLIYPAHDY 193 (251)
T ss_pred eEEECCCCC
Confidence 6 8999995
No 5
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.93 E-value=1.6e-24 Score=222.66 Aligned_cols=211 Identities=14% Similarity=0.167 Sum_probs=146.8
Q ss_pred ccCCceEEEEcCCCCCCCcccccE-EEEccCCCCCCCCceEEEe-cCCeEEEcCCCCCcHHHHHHHHHH--cCCCccEEE
Q 013637 186 EYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVA-QGEALIVDPGCRSEFHEELLKVVA--SLPRKLIVF 261 (439)
Q Consensus 186 ev~~Gv~~i~~~~~~~~p~~~~N~-y~i~~~~g~~~~~~s~~vi-~g~~vLID~G~~~~~~~~l~~~~~--~~~~i~~Vi 261 (439)
+|.+|||+++......+.|. .. |-+. .++..|+|++ +++.+|||||........+..+.+ ...++++|+
T Consensus 2 ~i~~~v~~vg~~d~~~~~f~--~~~~~~~-----~g~~~NsyLI~~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~Ii 74 (394)
T PRK11921 2 KINDNVTWVGKIDWELRKFH--GEEYSTH-----RGSSYNSYLIKDEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIV 74 (394)
T ss_pred eecCCeEEEeeecCCcceec--ceEeecC-----CceEEEEEEEeCCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEE
Confidence 68999999987654433332 22 3222 2344555555 455899999976533222222222 234677999
Q ss_pred eCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccC-CCCCCceecCCCceEEECCeEEEEEeCCC-CCCCCEEEEECC
Q 013637 262 VTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-DWSLGYTSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHAS 339 (439)
Q Consensus 262 lTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~-~~~~~~~~v~~g~~l~lGg~~l~vi~tpG-Ht~g~~~l~~~~ 339 (439)
+||.|+||+||+..+.+.+|+++||+++.+.+.+... ........+++|+++++|+.+++++++|| ||||++++|+++
T Consensus 75 lTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~ 154 (394)
T PRK11921 75 ANHGEIDHSGALPELMKEIPDTPIYCTKNGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLTG 154 (394)
T ss_pred eCCCCCchhhHHHHHHHHCCCCEEEECHHHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEcC
Confidence 9999999999999999999999999999887665422 11234567899999999999999999998 999999999999
Q ss_pred ccEEEEccccccCccc--ccccCCC-----------------CCHHHHHHHHHHHH--cCCCCEEEeCCCCCCC-ChHHH
Q 013637 340 TNSLIVGDHCVGQGSA--VLDITAG-----------------GNMTDYFQSTYKFL--ELSPHALIPMHGRVNL-WPKHM 397 (439)
Q Consensus 340 ~~iLftGD~l~~~~~~--~~~~~~~-----------------~~~~~~~~sL~rL~--~l~~~~IvPgHG~~~~-~~~~~ 397 (439)
.++|||||++...... .++...+ .-...+.+.+++|+ ++++++|+||||++.+ ++.+.
T Consensus 155 ~~vLFsgD~fG~~~~~~~~~~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i~~~~~~~~ 234 (394)
T PRK11921 155 DNILFSNDAFGQHYASELMYNDLVDQGELYQEAIKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVIWRDNPLQI 234 (394)
T ss_pred CCEEEecCcccccccCcccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccEEeCCHHHH
Confidence 9999999986543322 1111000 01123356788888 5578999999999866 45555
Q ss_pred HHHHHH
Q 013637 398 LCGYLK 403 (439)
Q Consensus 398 i~~~L~ 403 (439)
+..|.+
T Consensus 235 ~~~Y~~ 240 (394)
T PRK11921 235 VEKYLE 240 (394)
T ss_pred HHHHHH
Confidence 556654
No 6
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.93 E-value=6.4e-25 Score=212.37 Aligned_cols=147 Identities=28% Similarity=0.408 Sum_probs=120.8
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCC-CccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVS 308 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~-~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~ 308 (439)
++.+|||||....+.+. +++.+ .+.+|++||.|.||+||+..+++++|+++||++..+.. ......+.
T Consensus 22 ~~~ilIDpg~~~~vl~~----l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~-------~~~~~~v~ 90 (251)
T PRK10241 22 GRCLIVDPGEAEPVLNA----IAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD-------KGTTQVVK 90 (251)
T ss_pred CcEEEECCCChHHHHHH----HHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc-------cCCceEeC
Confidence 56899999976543333 33333 34699999999999999999999998899999765321 12245688
Q ss_pred CCceEEECCeEEEEEeCCCCCCCCEEEEECCccEEEEccccccCcccccccCCCCCHHHHHHHHHHHHcCCCCE-EEeCC
Q 013637 309 GSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIPMH 387 (439)
Q Consensus 309 ~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~~~iLftGD~l~~~~~~~~~~~~~~~~~~~~~sL~rL~~l~~~~-IvPgH 387 (439)
+|+.+.+|+.+++++++||||+||++|+.+ +++|+||+++..+++.+ +.++..++++|+++|.++++++ |+|||
T Consensus 91 ~g~~i~ig~~~~~vi~tPGHT~ghi~~~~~--~~lFtGDtlf~~g~gr~---f~g~~~~~~~Sl~kl~~l~~~t~i~pgH 165 (251)
T PRK10241 91 DGETAFVLGHEFSVFATPGHTLGHICYFSK--PYLFCGDTLFSGGCGRL---FEGTASQMYQSLKKINALPDDTLICCAH 165 (251)
T ss_pred CCCEEEeCCcEEEEEEcCCCCccceeeecC--CcEEEcCeeccCCcCCC---CCCCHHHHHHHHHHHHcCCCCEEEECCC
Confidence 999999999999999999999999999863 79999999987776654 5789999999999999999988 78999
Q ss_pred CCCCC
Q 013637 388 GRVNL 392 (439)
Q Consensus 388 G~~~~ 392 (439)
|+...
T Consensus 166 ~y~~~ 170 (251)
T PRK10241 166 EYTLS 170 (251)
T ss_pred CChhh
Confidence 98755
No 7
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.92 E-value=1.2e-23 Score=220.47 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=150.0
Q ss_pred cccCCceEEEEcCCCCCCCcccccE-EEEccCCCCCCCCceEEEecCCeEEEcCCCCCcHHHHHHHHHHc--CCCccEEE
Q 013637 185 QEYPPGVILVPMQSRTAKPFLTTNL-IVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS--LPRKLIVF 261 (439)
Q Consensus 185 ~ev~~Gv~~i~~~~~~~~p~~~~N~-y~i~~~~g~~~~~~s~~vi~g~~vLID~G~~~~~~~~l~~~~~~--~~~i~~Vi 261 (439)
.+|.++||+++......+-|. ++ |-+. .+.+.|++++.+++.+|||||........+.++... ..++++||
T Consensus 3 ~~i~~~vy~vg~~d~~~~~F~--~~~~~~~----~G~t~NsYLI~~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~Ii 76 (479)
T PRK05452 3 IHVKNNIHWVGQRDWEVRDFH--GTEYKTL----RGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIV 76 (479)
T ss_pred EEecCCeEEEeeecCCccccc--cceeecC----CCcEEEEEEEECCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEE
Confidence 578999999987665433332 22 3332 123344444445568999999754433333333332 24577999
Q ss_pred eCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCC--CCCceecCCCceEEEC-CeEEEEEeCCC-CCCCCEEEEE
Q 013637 262 VTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDW--SLGYTSVSGSEDICVG-GQRLTVVFSPG-HTDGHVALLH 337 (439)
Q Consensus 262 lTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~--~~~~~~v~~g~~l~lG-g~~l~vi~tpG-Ht~g~~~l~~ 337 (439)
+||.|+||+||+..+.+.+|+++||+++.+...+..... ...+..+++|+++++| +.++++++||| ||||++++|+
T Consensus 77 lTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~ 156 (479)
T PRK05452 77 INHAEEDHAGALTELMAQIPDTPIYCTANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYL 156 (479)
T ss_pred eCCCCcchhchHHHHHHHCCCCEEEECHHHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEE
Confidence 999999999999999998899999999998776654211 2245678999999999 47999999997 9999999999
Q ss_pred CCccEEEEccccccCcccc--cccCCC----------------CC-HHHHHHHHHHHHc--CCCCEEEeCCCCCCC-ChH
Q 013637 338 ASTNSLIVGDHCVGQGSAV--LDITAG----------------GN-MTDYFQSTYKFLE--LSPHALIPMHGRVNL-WPK 395 (439)
Q Consensus 338 ~~~~iLftGD~l~~~~~~~--~~~~~~----------------~~-~~~~~~sL~rL~~--l~~~~IvPgHG~~~~-~~~ 395 (439)
+++++|||||++-...... ++...+ +. ...++++++++++ +++++|+||||++.+ ++.
T Consensus 157 ~~~~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~~~~l~l~~~~i~p~HG~i~r~~~~ 236 (479)
T PRK05452 157 TGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPT 236 (479)
T ss_pred cCCCEEEecccccCCCCchhhhcccCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCEEECCCCceEeCCHH
Confidence 9999999999864333221 110000 01 1124678888884 578999999999866 455
Q ss_pred HHHHHHHHHHH
Q 013637 396 HMLCGYLKYER 406 (439)
Q Consensus 396 ~~i~~~L~~~~ 406 (439)
..++.|++-.+
T Consensus 237 ~~l~~Y~~~~~ 247 (479)
T PRK05452 237 QIVELYLKWAA 247 (479)
T ss_pred HHHHHHHHHhh
Confidence 66666665444
No 8
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.89 E-value=8.2e-23 Score=194.73 Aligned_cols=151 Identities=25% Similarity=0.374 Sum_probs=122.5
Q ss_pred CeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCC-CCEEEeCHhHHHHhccCCCCCCceecCC
Q 013637 231 EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP-DAILLAHENTMRRIGKDDWSLGYTSVSG 309 (439)
Q Consensus 231 ~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p-~a~V~~~~~~~~~l~~~~~~~~~~~v~~ 309 (439)
.+.++||.....+...+.+...+...+.+|++||+|+||+||+..+.+.+| ++++|.+. -+++. .-...+++
T Consensus 26 ~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~--~~r~~-----~i~~~~~~ 98 (265)
T KOG0813|consen 26 DADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA--DDRIP-----GITRGLKD 98 (265)
T ss_pred eeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCC--hhcCc-----cccccCCC
Confidence 367888888776655555544455566799999999999999999999855 89999985 11111 11223889
Q ss_pred CceEEECCeEEEEEeCCCCCCCCEEEEECC---ccEEEEccccccCcccccccCCCCCHHHHHHHHHHHHcCCCCE-EEe
Q 013637 310 SEDICVGGQRLTVVFSPGHTDGHVALLHAS---TNSLIVGDHCVGQGSAVLDITAGGNMTDYFQSTYKFLELSPHA-LIP 385 (439)
Q Consensus 310 g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~---~~iLftGD~l~~~~~~~~~~~~~~~~~~~~~sL~rL~~l~~~~-IvP 385 (439)
|+++.+||.+|++++|||||.||+||++.+ .+.+|+||+++..+++.+ +.+..+++..|+..+..+++++ |+|
T Consensus 99 ~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~---FEgt~~~M~~sl~~l~~L~~~t~iyp 175 (265)
T KOG0813|consen 99 GETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRF---FEGTAEQMDSSLNELIALPDDTRIYP 175 (265)
T ss_pred CcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccch---hcCCHHHHHHhHHHhhcCCCCceEcc
Confidence 999999999999999999999999999985 889999999998888755 6678888889998899999985 999
Q ss_pred CCCCCC
Q 013637 386 MHGRVN 391 (439)
Q Consensus 386 gHG~~~ 391 (439)
||+...
T Consensus 176 GHeYt~ 181 (265)
T KOG0813|consen 176 GHEYTK 181 (265)
T ss_pred Cccccc
Confidence 999643
No 9
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.88 E-value=3.5e-21 Score=192.62 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=155.2
Q ss_pred CCccccCCceEEEEcCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCCcHHHHHHHHHHc--CCCccE
Q 013637 182 LSYQEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVAS--LPRKLI 259 (439)
Q Consensus 182 ~~~~ev~~Gv~~i~~~~~~~~p~~~~N~y~i~~~~g~~~~~~s~~vi~g~~vLID~G~~~~~~~~l~~~~~~--~~~i~~ 259 (439)
+...++++++++++...-....| .+.|-+. .++++|++.+..++.+||||+........+..+.+- ...++|
T Consensus 2 ~~~~~i~~~i~~~~~~dw~~~~f--~~~~~~~----~GttyNSYLI~~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDY 75 (388)
T COG0426 2 VQVLKIADNIYWVGVRDWDRRRF--EIEYETP----RGTTYNSYLIVGDKTALIDTVGEKFFDEYLENLSKYIDPKEIDY 75 (388)
T ss_pred CccccccCceEEecccchhheee--eeeeccC----CCceeeeEEEeCCcEEEECCCCcchHHHHHHHHHhhcChhcCeE
Confidence 34568899999997554221111 1222111 245666666666669999999876544444433332 345789
Q ss_pred EEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCC-CceecCCCceEEECCeEEEEEeCCC-CCCCCEEEEE
Q 013637 260 VFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSL-GYTSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLH 337 (439)
Q Consensus 260 VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~-~~~~v~~g~~l~lGg~~l~vi~tpG-Ht~g~~~l~~ 337 (439)
||++|..+||+|++..+.+.+|+++|++++...+.++...... .+..++.|+++++||.+++++.+|- |+||+++.|.
T Consensus 76 Ii~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd 155 (388)
T COG0426 76 IIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYD 155 (388)
T ss_pred EEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEee
Confidence 9999999999999999999999999999999988886642221 2788999999999999999999986 9999999999
Q ss_pred CCccEEEEccccccCcccccccCCCCCHHHH-------------------HHHHHHHHcCCCCEEEeCCCCCCCC-hHHH
Q 013637 338 ASTNSLIVGDHCVGQGSAVLDITAGGNMTDY-------------------FQSTYKFLELSPHALIPMHGRVNLW-PKHM 397 (439)
Q Consensus 338 ~~~~iLftGD~l~~~~~~~~~~~~~~~~~~~-------------------~~sL~rL~~l~~~~IvPgHG~~~~~-~~~~ 397 (439)
+.++||||+|.+-...+... .++.+.+++ ...++++..++.+.|+||||++... +.+.
T Consensus 156 ~~~kILFS~D~fG~h~~~~~--~fded~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i 233 (388)
T COG0426 156 PEDKILFSCDAFGAHVCDDY--RFDEDIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEI 233 (388)
T ss_pred cCCcEEEccccccccccchh--ccccCHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHH
Confidence 99999999998644444321 123333322 3455667777899999999998884 6776
Q ss_pred HHHHHH
Q 013637 398 LCGYLK 403 (439)
Q Consensus 398 i~~~L~ 403 (439)
+..|.+
T Consensus 234 ~~~Y~~ 239 (388)
T COG0426 234 VEAYRD 239 (388)
T ss_pred HHHHHH
Confidence 665544
No 10
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.86 E-value=2.8e-20 Score=176.70 Aligned_cols=158 Identities=25% Similarity=0.426 Sum_probs=118.2
Q ss_pred CeEEEcCCCCCcHHHHHHHHHHcCC-CccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCC----------
Q 013637 231 EALIVDPGCRSEFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD---------- 299 (439)
Q Consensus 231 ~~vLID~G~~~~~~~~l~~~~~~~~-~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~---------- 299 (439)
+.+|||||........+.+.....+ ++++|++||.|.||+||+..+.+..+.++++.++..........
T Consensus 36 ~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (252)
T COG0491 36 GAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLREEILRKAGVTAEA 115 (252)
T ss_pred ceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhhccccccccccccc
Confidence 5899999998753344445444444 57799999999999999999998864478855544333221110
Q ss_pred --C--CCCceecCCCceEEECCeEEEEEeCCCCCCCCEEEEECCccEEEEccccccCc--ccccccCCCCCHHHHHHHHH
Q 013637 300 --W--SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQG--SAVLDITAGGNMTDYFQSTY 373 (439)
Q Consensus 300 --~--~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~~~iLftGD~l~~~~--~~~~~~~~~~~~~~~~~sL~ 373 (439)
. ......+.+++.+.+++..+++++|||||+||+++++++.++||+||+++... ...... ...+...++++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~~~-~~~~~~~~~~s~~ 194 (252)
T COG0491 116 YAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLDL-PGGDAAQLLASLR 194 (252)
T ss_pred CCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCccccC-CCCCHHHHHHHHH
Confidence 0 12233466899999999999999999999999999999888999999998765 112211 2234889999999
Q ss_pred HHHcCCCC--EEEeCCCC
Q 013637 374 KFLELSPH--ALIPMHGR 389 (439)
Q Consensus 374 rL~~l~~~--~IvPgHG~ 389 (439)
++..+..+ .++||||+
T Consensus 195 ~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 195 RLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred HHHhccCCCCEEECCCCc
Confidence 99888775 89999998
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.82 E-value=8.9e-19 Score=158.92 Aligned_cols=155 Identities=26% Similarity=0.392 Sum_probs=121.6
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHc--CCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCC--------
Q 013637 230 GEALIVDPGCRSEFHEELLKVVAS--LPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-------- 299 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~--~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~-------- 299 (439)
++.+|||||..... ..+.. +.. ..++++|++||.|.||++|+..+.+. +++++|+++...+.+....
T Consensus 15 ~~~iliD~g~~~~~-~~~~~-l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 91 (183)
T smart00849 15 GGAILIDTGPGEAE-DLLAE-LKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAELLKDLLKLGGALGA 91 (183)
T ss_pred CceEEEeCCCChhH-HHHHH-HHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhHHHhccchhccccCc
Confidence 45899999965432 22222 222 34667999999999999999998887 6899999999888775321
Q ss_pred ---CCCCceecCCCceEEECCeEEEEEeCCCCCCCCEEEEECCccEEEEccccccCcc-cccccCCCCCHHHHHHHHHHH
Q 013637 300 ---WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGS-AVLDITAGGNMTDYFQSTYKF 375 (439)
Q Consensus 300 ---~~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~~~iLftGD~l~~~~~-~~~~~~~~~~~~~~~~sL~rL 375 (439)
.......+..++++.+++.++++++++||++|++++++++.+++|+||+.+.... .............+.+++.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (183)
T smart00849 92 EAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASDSLESLLKL 171 (183)
T ss_pred CCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCCCCccHHHHHHHHHHh
Confidence 1234566889999999999999999999999999999999999999999875552 223333456788899999999
Q ss_pred HcCCCCEEEeCC
Q 013637 376 LELSPHALIPMH 387 (439)
Q Consensus 376 ~~l~~~~IvPgH 387 (439)
.....++++|||
T Consensus 172 ~~~~~~~i~~~H 183 (183)
T smart00849 172 LALDPELVVPGH 183 (183)
T ss_pred hcCCccEeecCC
Confidence 999999999999
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.81 E-value=3.5e-19 Score=161.25 Aligned_cols=158 Identities=22% Similarity=0.325 Sum_probs=115.5
Q ss_pred CCeEEEcCCCCCcHHHHH--HHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCC--------
Q 013637 230 GEALIVDPGCRSEFHEEL--LKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-------- 299 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l--~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~-------- 299 (439)
++.+|||||......... ........++.+||+||.|.||+||+..|.+.++...++.............
T Consensus 15 ~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (194)
T PF00753_consen 15 DGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAIRPPDRDSASRRG 94 (194)
T ss_dssp TEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccccccccccccccc
Confidence 559999999997754444 2344455677899999999999999999999985555555444332221110
Q ss_pred ---CCCCceecCCCceEEECCeEEEEEeCCCCCCCCEEEEECCccEEEEccccccCccccccc---------CCCCCHHH
Q 013637 300 ---WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDI---------TAGGNMTD 367 (439)
Q Consensus 300 ---~~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~~~iLftGD~l~~~~~~~~~~---------~~~~~~~~ 367 (439)
................++..+.+...++|++++++++.+++++||+||+++......... ....+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
T PF00753_consen 95 PAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPDPDLPLRGADVRYGSNWEE 174 (194)
T ss_dssp HHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSSTSHTTTTHTTSHTTHHHH
T ss_pred cccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEeccCCccccccccccccccccCcHHHHH
Confidence 011122334455566677888888999999999999999999999999987655544432 12356888
Q ss_pred HHHHHHHHHcCCCCEEEeCC
Q 013637 368 YFQSTYKFLELSPHALIPMH 387 (439)
Q Consensus 368 ~~~sL~rL~~l~~~~IvPgH 387 (439)
+.++++++..+++++++|||
T Consensus 175 ~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 175 SIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp HHHHHHHHHTSTTSEEEESS
T ss_pred HHHHHHHHHCCCCCEEEeCc
Confidence 99999999999999999999
No 13
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.77 E-value=1.1e-18 Score=154.24 Aligned_cols=150 Identities=23% Similarity=0.372 Sum_probs=123.6
Q ss_pred cCCeEEEcCCCCCcHHHHHHHHHHcCCC-ccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceec
Q 013637 229 QGEALIVDPGCRSEFHEELLKVVASLPR-KLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSV 307 (439)
Q Consensus 229 ~g~~vLID~G~~~~~~~~l~~~~~~~~~-i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v 307 (439)
++++++|||-.... ..-.++++.++- ..|-+.||.|.||+-|...++...|+++-+++...- ......+
T Consensus 31 ~~~AviIDPV~et~--~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kSVis~~SG--------akAD~~l 100 (237)
T KOG0814|consen 31 TGKAVIIDPVLETV--SRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKSVISSASG--------AKADLHL 100 (237)
T ss_pred CCceEEecchhhcc--cchHHHHHhcCceeeeeecceeecccccccchHHHhcccHHHHhhhccc--------ccccccc
Confidence 46699999986543 233456666663 349999999999999999999999988755544221 1234578
Q ss_pred CCCceEEECCeEEEEEeCCCCCCCCEEEEECCccEEEEccccccCcccccccCCCCCHHHHHHHH-HHHHcCCCCE-EEe
Q 013637 308 SGSEDICVGGQRLTVVFSPGHTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAGGNMTDYFQST-YKFLELSPHA-LIP 385 (439)
Q Consensus 308 ~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~~~iLftGD~l~~~~~~~~~~~~~~~~~~~~~sL-~rL~~l~~~~-IvP 385 (439)
++|+.|++|+..+++..|||||+|++.|...+.+..|+||+++.+++++.++ ..|......+|+ .+|..|+-++ |+|
T Consensus 101 ~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDF-QqG~~~~LyesVH~kIFTLP~d~~iYp 179 (237)
T KOG0814|consen 101 EDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDF-QQGCPASLYESVHSKIFTLPEDYLIYP 179 (237)
T ss_pred CCCCEEEEccEEEEEecCCCCCCceEEEEecCcceeeecceeEEeccCccch-hccChHHHHHHHhHHheeCCCceEEee
Confidence 8999999999999999999999999999999999999999999999998876 667888888888 4999999887 899
Q ss_pred CCCC
Q 013637 386 MHGR 389 (439)
Q Consensus 386 gHG~ 389 (439)
+|..
T Consensus 180 aHdY 183 (237)
T KOG0814|consen 180 AHDY 183 (237)
T ss_pred cccc
Confidence 9976
No 14
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.74 E-value=5.8e-17 Score=144.85 Aligned_cols=158 Identities=21% Similarity=0.200 Sum_probs=104.1
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~ 309 (439)
++.|||||-.-.. ...+.+.+++.+.+|++||. ||+..+..+++.+ +++||+|..+.+.+.- .....+.+
T Consensus 32 ~GnilIDP~~ls~---~~~~~l~a~ggv~~IvLTn~--dHvR~A~~ya~~~-~a~i~~p~~d~~~~p~----~~D~~l~d 101 (199)
T PF14597_consen 32 EGNILIDPPPLSA---HDWKHLDALGGVAWIVLTNR--DHVRAAEDYAEQT-GAKIYGPAADAAQFPL----ACDRWLAD 101 (199)
T ss_dssp T--EEES-----H---HHHHHHHHTT--SEEE-SSG--GG-TTHHHHHHHS---EEEEEGGGCCC-SS------SEEE-T
T ss_pred CCCEEecCccccH---HHHHHHHhcCCceEEEEeCC--hhHhHHHHHHHHh-CCeeeccHHHHhhCCC----CCcccccc
Confidence 4589999998764 55667778889999999997 9999999999998 9999999987654321 23467889
Q ss_pred CceEEECCeEEEEEeCCC-CCCCCEEEEECCccEEEEccccccCcccccccCCC---CCHHHHHHHHHHHHcC-CCCEEE
Q 013637 310 SEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLDITAG---GNMTDYFQSTYKFLEL-SPHALI 384 (439)
Q Consensus 310 g~~l~lGg~~l~vi~tpG-Ht~g~~~l~~~~~~iLftGD~l~~~~~~~~~~~~~---~~~~~~~~sL~rL~~l-~~~~Iv 384 (439)
|+++ ++| +++++.+| ||+|.+.+++++ ++||+||++.....+.+...++ .|..+..+|+.||.++ +.+.++
T Consensus 102 ge~i-~~g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~~fe~lL 177 (199)
T PF14597_consen 102 GEEI-VPG--LWVIHLPGSKTPGELALLLED-RVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLRRLAAYPDFEWLL 177 (199)
T ss_dssp T-BS-STT--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHHHHHT-TT--EEE
T ss_pred CCCc-cCc--eEEEEcCCCCCCceeEEEecc-ceEEecceeeecCCCCeEECChHHcCCHHHHHHHHHHHhccccccEEe
Confidence 9866 566 99999999 999999999986 6999999886655444444443 6899999999999999 699999
Q ss_pred eCCCCCCC-ChHHHHHHH
Q 013637 385 PMHGRVNL-WPKHMLCGY 401 (439)
Q Consensus 385 PgHG~~~~-~~~~~i~~~ 401 (439)
+|||.++. +.++++.+.
T Consensus 178 vGdGwpi~~~~r~rl~~L 195 (199)
T PF14597_consen 178 VGDGWPIFRDARQRLREL 195 (199)
T ss_dssp ESBB--B-S-HHHHHHHH
T ss_pred ecCCchhhhhHHHHHHHH
Confidence 99998776 444444443
No 15
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.50 E-value=3.8e-13 Score=139.76 Aligned_cols=135 Identities=14% Similarity=0.164 Sum_probs=97.9
Q ss_pred CCCCCCceEEEe--cCCeEEEcCCCCCcHHHH---------HHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEE
Q 013637 217 VSDDCGNHRFVA--QGEALIVDPGCRSEFHEE---------LLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAIL 285 (439)
Q Consensus 217 g~~~~~~s~~vi--~g~~vLID~G~~~~~~~~---------l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V 285 (439)
|....++|+|++ .++.+|||+|........ +..+.....++++|++||.|.||++|+..+...++.++|
T Consensus 8 G~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~V 87 (422)
T TIGR00649 8 GLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPI 87 (422)
T ss_pred CCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeE
Confidence 334445555554 355899999986321000 112222345677999999999999999999887755799
Q ss_pred EeCHhHHHHhccC------CCCCCceecCCCceEEEC-CeEEEEEeCCCCCCCCEEEEE--CCccEEEEcccccc
Q 013637 286 LAHENTMRRIGKD------DWSLGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVG 351 (439)
Q Consensus 286 ~~~~~~~~~l~~~------~~~~~~~~v~~g~~l~lG-g~~l~vi~tpGHt~g~~~l~~--~~~~iLftGD~l~~ 351 (439)
|+++.+...+... ........++.++.+++| +.+++++++++|++|+++|++ ++.+++||||+.+.
T Consensus 88 y~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~ 162 (422)
T TIGR00649 88 YGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFD 162 (422)
T ss_pred EeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCC
Confidence 9999987665421 112345678899999997 599999999988999999988 45679999998653
No 16
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.32 E-value=1.1e-11 Score=125.13 Aligned_cols=213 Identities=14% Similarity=0.224 Sum_probs=147.6
Q ss_pred cccCCceEEEEcCCCCCCCcccccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCCcHHHHHHHHHH-cCCC--ccEEE
Q 013637 185 QEYPPGVILVPMQSRTAKPFLTTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVA-SLPR--KLIVF 261 (439)
Q Consensus 185 ~ev~~Gv~~i~~~~~~~~p~~~~N~y~i~~~~g~~~~~~s~~vi~g~~vLID~G~~~~~~~~l~~~~~-~~~~--i~~Vi 261 (439)
.+|.||+|++ +.|...|+.+|+++ .++|+|||-..+...+.-.++.. ..++ +..||
T Consensus 111 fkVtd~iYQV-------RG~DisNITfveGd--------------tg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVI 169 (655)
T COG2015 111 FKVTDGIYQV-------RGFDISNITFVEGD--------------TGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVI 169 (655)
T ss_pred eeeccceeEe-------ecccccceEEEcCC--------------cceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEE
Confidence 5789999999 46777899999875 35999999988876555555443 4444 34899
Q ss_pred eCCCchhhhcChHHHHHh----CCCCEEEeCHhHHHHhccC------------CC-------------------------
Q 013637 262 VTHHHRDHVDGLSIIQKC----NPDAILLAHENTMRRIGKD------------DW------------------------- 300 (439)
Q Consensus 262 lTH~H~DHigG~~~l~~~----~p~a~V~~~~~~~~~l~~~------------~~------------------------- 300 (439)
.||.|.||.||..-+... ...++|+++...++..-.. .+
T Consensus 170 YtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G 249 (655)
T COG2015 170 YTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATG 249 (655)
T ss_pred eecccccccCCeeeccCHHHcccCceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccC
Confidence 999999999999766432 2367899988765433110 00
Q ss_pred -----CCCceecCCCceEEECCeEEEEEeCCC-CCCCCEEEEECCccEEEEccccccCcccccc--cCCCCCHHHHHHHH
Q 013637 301 -----SLGYTSVSGSEDICVGGQRLTVVFSPG-HTDGHVALLHASTNSLIVGDHCVGQGSAVLD--ITAGGNMTDYFQST 372 (439)
Q Consensus 301 -----~~~~~~v~~g~~l~lGg~~l~vi~tpG-Ht~g~~~l~~~~~~iLftGD~l~~~~~~~~~--~~~~~~~~~~~~sL 372 (439)
.......+.|+++.++|.++++..||| .+|..+-+|+|..++|.+..-....-+..+. ...-.|..+|-+-|
T Consensus 250 ~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tPgtEaPAEM~~y~P~~kaL~mAEnat~~lHNlytlRGa~vRD~~~Ws~yl 329 (655)
T COG2015 250 EVSLIAPTKIIEETGETLTIDGVEFEFQMTPGTEAPAEMHFYFPRLKALCMAENATHTLHNLYTLRGAEVRDAKAWSKYL 329 (655)
T ss_pred ceeeecceEEeeccCceEEEeceEEEEeeCCCCCCcHHHhhhhhHHHHHHHHhhccccceeeeecccceecchHHHHHHH
Confidence 001123467899999999999999999 7899999999999988877654222111111 11123556665555
Q ss_pred H---HHHcCCCCEEEeCCCCCCCChHHHHHHHHHHHHhhhccccCchhhh
Q 013637 373 Y---KFLELSPHALIPMHGRVNLWPKHMLCGYLKYERQLFLFFPSHHSIL 419 (439)
Q Consensus 373 ~---rL~~l~~~~IvPgHG~~~~~~~~~i~~~L~~~~~~~~~i~~~~~~~ 419 (439)
. .+..-+.|+++..|+.+ .+....|.++|++.+..+.++..+--.+
T Consensus 330 neal~~fg~~adVmfa~H~WP-~wG~~~I~e~L~kqRDmy~yiHDQTLrL 378 (655)
T COG2015 330 NEALDMFGDDADVMFASHTWP-RWGNAHINEFLGKQRDMYKYIHDQTLRL 378 (655)
T ss_pred HHHHHHhcccccEEEeecCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33344678899999986 4577889999999999988885554433
No 17
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.28 E-value=6.9e-11 Score=112.25 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=98.2
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~ 309 (439)
+..+||||+........+. .... ++++|++||.|.||+++...+... +++++|++....+.+...... ....++.
T Consensus 17 ~~~iLiDP~~~~~~~~~~~--~~~~-~id~vliTH~H~DH~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~-~~~~~~~ 91 (228)
T PRK00685 17 GKKILIDPFITGNPLADLK--PEDV-KVDYILLTHGHGDHLGDTVEIAKR-TGATVIANAELANYLSEKGVE-KTHPMNI 91 (228)
T ss_pred CEEEEECCCCCCCCCCCCC--hhcC-cccEEEeCCCCccccccHHHHHHh-CCCEEEEeHHHHHHHHhcCCC-ceeeccC
Confidence 4489999865321000110 1122 677999999999999998877654 488999999888777544221 4567888
Q ss_pred CceEEECCeEEEEEeCCCCCCC------------CEEEEE--CCccEEEEccccccCc--------ccccccCCCC-C-H
Q 013637 310 SEDICVGGQRLTVVFSPGHTDG------------HVALLH--ASTNSLIVGDHCVGQG--------SAVLDITAGG-N-M 365 (439)
Q Consensus 310 g~~l~lGg~~l~vi~tpGHt~g------------~~~l~~--~~~~iLftGD~l~~~~--------~~~~~~~~~~-~-~ 365 (439)
|+.+.+++.+++++++. |+.. ..+|.+ ++.+++|+||+-+... ...+...+.+ . .
T Consensus 92 ~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~~~~~h 170 (228)
T PRK00685 92 GGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMKLIGELHKPDVALLPIGDNFT 170 (228)
T ss_pred CCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHHHHHHhhCCCEEEEecCCccc
Confidence 99999999888887543 3322 256655 4568999999854321 0111000111 1 1
Q ss_pred HHHHHHHHHHHcCCCCEEEeCCCCCC
Q 013637 366 TDYFQSTYKFLELSPHALIPMHGRVN 391 (439)
Q Consensus 366 ~~~~~sL~rL~~l~~~~IvPgHG~~~ 391 (439)
-...+.++..+.+.++.++|.|-...
T Consensus 171 ~~~~ea~~~~~~~~~k~~v~~H~~~~ 196 (228)
T PRK00685 171 MGPEDAALAVELIKPKIVIPMHYNTF 196 (228)
T ss_pred cCHHHHHHHHHhhCCCEEEEeccCCC
Confidence 12234445566678899999997643
No 18
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.25 E-value=5.3e-11 Score=125.87 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=101.6
Q ss_pred CCCCCCceEEEe--cCCeEEEcCCCCCc---------HHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEE
Q 013637 217 VSDDCGNHRFVA--QGEALIVDPGCRSE---------FHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAIL 285 (439)
Q Consensus 217 g~~~~~~s~~vi--~g~~vLID~G~~~~---------~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V 285 (439)
|....+.|+|++ .++.+++|+|..-. +...+.-+.+...++++||+||.|.||+||++++....+.++|
T Consensus 16 G~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~pi 95 (555)
T COG0595 16 GVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPI 95 (555)
T ss_pred ChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCce
Confidence 455555566654 57799999996532 1111112233345677999999999999999999998766999
Q ss_pred EeCHhHHHHhccC-------CCCCCceecCCCceEEECCeEEEEEeCCCCCCCCEEEEE--CCccEEEEcccccc
Q 013637 286 LAHENTMRRIGKD-------DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLH--ASTNSLIVGDHCVG 351 (439)
Q Consensus 286 ~~~~~~~~~l~~~-------~~~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~--~~~~iLftGD~l~~ 351 (439)
|+++-+...++.. ........++.++.+++++..++++++.+--|+++++.+ +.+.|++|||.-+.
T Consensus 96 y~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d 170 (555)
T COG0595 96 YASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFD 170 (555)
T ss_pred ecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEEec
Confidence 9999888776543 122467889999999999999999999877799988877 56679999998653
No 19
>PRK11539 ComEC family competence protein; Provisional
Probab=99.23 E-value=2.1e-10 Score=127.25 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=81.1
Q ss_pred CCeEEEcCCCCC----cHHHHHHHHHHcCC-CccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCc
Q 013637 230 GEALIVDPGCRS----EFHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 304 (439)
Q Consensus 230 g~~vLID~G~~~----~~~~~l~~~~~~~~-~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~ 304 (439)
++.+|||||... ...+.+...++..+ ++++|++||.|.||+||+..+.+.+|..+++.+.... ..
T Consensus 520 ~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~i~~~~~~~----------~~ 589 (755)
T PRK11539 520 GKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAWIRSPLNWA----------NH 589 (755)
T ss_pred CEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcceeeccCccc----------Cc
Confidence 569999999741 12234445555443 4679999999999999999999999889998864211 12
Q ss_pred eecCCCceEEECCeEEEEEeCCCCC-----CCCEEEEEC--CccEEEEccc
Q 013637 305 TSVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHA--STNSLIVGDH 348 (439)
Q Consensus 305 ~~v~~g~~l~lGg~~l~vi~tpGHt-----~g~~~l~~~--~~~iLftGD~ 348 (439)
.....|+.+..++.++++++.++|+ ++++++.+. +.++||+||.
T Consensus 590 ~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi 640 (755)
T PRK11539 590 LPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDL 640 (755)
T ss_pred ccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCC
Confidence 2356889999999999999887654 457777774 4569999995
No 20
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.20 E-value=5.4e-11 Score=128.66 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=89.0
Q ss_pred CCCCCCCceEEEec--CCeEEEcCCCCCcH-HHHHHHHH----HcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeC
Q 013637 216 SVSDDCGNHRFVAQ--GEALIVDPGCRSEF-HEELLKVV----ASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAH 288 (439)
Q Consensus 216 ~g~~~~~~s~~vi~--g~~vLID~G~~~~~-~~~l~~~~----~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~ 288 (439)
+|.+..++|||++. +..+|||||..... ........ ....++++||+||.|.||+|+++.+.+...+.+||++
T Consensus 181 Gg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T 260 (630)
T TIGR03675 181 GGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCT 260 (630)
T ss_pred ecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeec
Confidence 34455566777763 45899999976531 00000111 1134567999999999999999999875447899999
Q ss_pred HhHHHHhc-----------cCC----CC--------CCceecCCCceEEE-CCeEEEEEeCCCCCCCCEEEEE--CC--c
Q 013637 289 ENTMRRIG-----------KDD----WS--------LGYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLH--AS--T 340 (439)
Q Consensus 289 ~~~~~~l~-----------~~~----~~--------~~~~~v~~g~~l~l-Gg~~l~vi~tpGHt~g~~~l~~--~~--~ 340 (439)
..+.+.+. ... +. .....++.++++++ ++.++++++ .||++|+.++.+ .+ .
T Consensus 261 ~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~-AGHilGsa~~~~~i~dg~~ 339 (630)
T TIGR03675 261 PPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYN-AGHILGSAIAHLHIGDGLY 339 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEec-CccccCceEEEEEECCCCE
Confidence 87654321 000 00 12356778888888 467777765 489999987654 33 3
Q ss_pred cEEEEccccc
Q 013637 341 NSLIVGDHCV 350 (439)
Q Consensus 341 ~iLftGD~l~ 350 (439)
+++||||.-.
T Consensus 340 ~IvYTGD~~~ 349 (630)
T TIGR03675 340 NIVYTGDFKY 349 (630)
T ss_pred EEEEeCCCCC
Confidence 7999999754
No 21
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.18 E-value=8.9e-10 Score=104.69 Aligned_cols=167 Identities=18% Similarity=0.211 Sum_probs=98.5
Q ss_pred CceEEEec--CCeEEEcCCCC-CcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhC-CCCEEEeCHhHHHHhcc
Q 013637 222 GNHRFVAQ--GEALIVDPGCR-SEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLAHENTMRRIGK 297 (439)
Q Consensus 222 ~~s~~vi~--g~~vLID~G~~-~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~-p~a~V~~~~~~~~~l~~ 297 (439)
.+.++++. +..+|+|||.. ..+..+++.+..++.++++|++||.|+||+||+..+.+.. |+.+||+|+........
T Consensus 21 hGfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~~~~~ 100 (259)
T COG1237 21 HGFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFKAKIE 100 (259)
T ss_pred CceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHhhhcc
Confidence 34444443 34899999955 4467777777778889999999999999999999987754 88999999987662211
Q ss_pred CCCCC---------CceecCCCceEE-----ECCeE---E---EEEeCCCC---CCCCEEEEECCc--cEEEEcccc---
Q 013637 298 DDWSL---------GYTSVSGSEDIC-----VGGQR---L---TVVFSPGH---TDGHVALLHAST--NSLIVGDHC--- 349 (439)
Q Consensus 298 ~~~~~---------~~~~v~~g~~l~-----lGg~~---l---~vi~tpGH---t~g~~~l~~~~~--~iLftGD~l--- 349 (439)
..... ......+...+. .|... + ..+ ..|- -.+.+++.+..+ -+++||-.=
T Consensus 101 ~~~~~gi~e~~~~~~~~~~~~~~~I~~g~~~~Gei~~~~~e~~~~~-~dg~~D~~~de~aLi~~~~~GlvvItGCsH~GI 179 (259)
T COG1237 101 VFREIGIPELEELARLILSEEPDEIVEGVITLGEIPKVTFEKGGYF-EDGEPDPVLDEQALIVETEKGLVVITGCSHPGI 179 (259)
T ss_pred ccccccchhhhhccceeecCCCceeecCeEEecccCcccccccccc-ccCCCCCcCCceEEEEecCCceEEEEcCCcccH
Confidence 11000 011111221111 11110 0 000 1111 125567776532 388898641
Q ss_pred ----------ccC-cccccccC--CCCCHHHHHHHHHHHHcCCCCEEEeCCCC
Q 013637 350 ----------VGQ-GSAVLDIT--AGGNMTDYFQSTYKFLELSPHALIPMHGR 389 (439)
Q Consensus 350 ----------~~~-~~~~~~~~--~~~~~~~~~~sL~rL~~l~~~~IvPgHG~ 389 (439)
+.. ....++.+ .........+.++.++++.++.|+|+|..
T Consensus 180 ~niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCT 232 (259)
T COG1237 180 VNIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCT 232 (259)
T ss_pred HHHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCC
Confidence 000 00011110 12334566778999999999999999987
No 22
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.14 E-value=2e-10 Score=113.68 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh------CCCCEEEeCHhHHHHhccC-----
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRIGKD----- 298 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~------~p~a~V~~~~~~~~~l~~~----- 298 (439)
+..+|||+|.+.. ..+.+......++++||+||.|+||++|+..+... ....+||+++...+.+...
T Consensus 27 ~~~iLiD~G~g~~--~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~ 104 (299)
T TIGR02651 27 GELWLFDCGEGTQ--RQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSY 104 (299)
T ss_pred CeEEEEECCHHHH--HHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHHcc
Confidence 4589999998733 33333222334567999999999999999987642 1246799998776654321
Q ss_pred ---CCCCCceecCCCc-eEEECCeEEEEEeCCCCCCCCEEEEEC
Q 013637 299 ---DWSLGYTSVSGSE-DICVGGQRLTVVFSPGHTDGHVALLHA 338 (439)
Q Consensus 299 ---~~~~~~~~v~~g~-~l~lGg~~l~vi~tpGHt~g~~~l~~~ 338 (439)
........+.+++ .+..++.+++.+.+. |+..++.|.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 147 (299)
T TIGR02651 105 TYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFE 147 (299)
T ss_pred cCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEE
Confidence 1122345677787 588899999988886 67777777764
No 23
>PRK02113 putative hydrolase; Provisional
Probab=99.13 E-value=1.2e-09 Score=105.63 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=82.6
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh--CCCCEEEeCHhHHHHhccCC--------
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC--NPDAILLAHENTMRRIGKDD-------- 299 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~--~p~a~V~~~~~~~~~l~~~~-------- 299 (439)
+..+|||+|.+.. ..+.+. ...++++|++||.|.||++|+..+... ..+.+||+++.+.+.+....
T Consensus 44 ~~~iLiD~G~g~~--~~l~~~--~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 119 (252)
T PRK02113 44 GARILIDCGPDFR--EQMLRL--PFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPYCFVEHS 119 (252)
T ss_pred CeEEEEECCchHH--HHHHhc--CccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCeeeccCC
Confidence 5589999998643 233232 456778999999999999999877532 23678999998877664321
Q ss_pred CC----CCceecCCCceEEECCeEEEEEeCCCCC-CCCEEEEECCccEEEEcccc
Q 013637 300 WS----LGYTSVSGSEDICVGGQRLTVVFSPGHT-DGHVALLHASTNSLIVGDHC 349 (439)
Q Consensus 300 ~~----~~~~~v~~g~~l~lGg~~l~vi~tpGHt-~g~~~l~~~~~~iLftGD~l 349 (439)
+. ..+..++.|+.+++++.+++.+.+. |+ ...+.|.+ ++++|+||+-
T Consensus 120 ~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~ 171 (252)
T PRK02113 120 YPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDML 171 (252)
T ss_pred CCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCC
Confidence 11 2356778899999999999998876 54 34567777 5899999974
No 24
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.13 E-value=2.1e-09 Score=117.76 Aligned_cols=113 Identities=16% Similarity=0.261 Sum_probs=79.8
Q ss_pred CCeEEEcCCCCCc----HHHHHHHHHHcCC-CccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCc
Q 013637 230 GEALIVDPGCRSE----FHEELLKVVASLP-RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGY 304 (439)
Q Consensus 230 g~~vLID~G~~~~----~~~~l~~~~~~~~-~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~ 304 (439)
++.+|||+|.... ....+...++..+ ++++|++||.|.||+||+..+.+.+|..+++.+..... . ....
T Consensus 459 ~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~~~~----~--~~~~ 532 (662)
T TIGR00361 459 GKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRLVIPKGFVE----E--GVAI 532 (662)
T ss_pred CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEEEeccchhh----C--CCce
Confidence 5689999997521 1233444444332 27899999999999999999999988778888754211 0 1234
Q ss_pred eecCCCceEEECCeEEEEEeCCC-----CCCCCEEEEEC--CccEEEEccc
Q 013637 305 TSVSGSEDICVGGQRLTVVFSPG-----HTDGHVALLHA--STNSLIVGDH 348 (439)
Q Consensus 305 ~~v~~g~~l~lGg~~l~vi~tpG-----Ht~g~~~l~~~--~~~iLftGD~ 348 (439)
..+..|+.+++++.++++++.+. ....++++.+. +.++||+||.
T Consensus 533 ~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~ 583 (662)
T TIGR00361 533 EECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDL 583 (662)
T ss_pred EecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCC
Confidence 56788999999999999996431 23445666553 4579999996
No 25
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.12 E-value=3.5e-10 Score=112.46 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh------CCCCEEEeCHhHHHHhccC------
Q 013637 231 EALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRIGKD------ 298 (439)
Q Consensus 231 ~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~------~p~a~V~~~~~~~~~l~~~------ 298 (439)
+.+|||+|.+.. ..+.+...+..++++||+||.|+||++|+..+... ....+||+++...+.+...
T Consensus 31 ~~iLiD~G~g~~--~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~ 108 (303)
T TIGR02649 31 GLWLFDCGEGTQ--HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGS 108 (303)
T ss_pred CEEEEECCccHH--HHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhccc
Confidence 579999999864 34444333445678999999999999999976531 1246899999876655321
Q ss_pred --CCCCCceecCCCceEEECCeEEEEEeCCCCCCCCEEEEEC
Q 013637 299 --DWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA 338 (439)
Q Consensus 299 --~~~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~ 338 (439)
........+..++.+..++.+++.+.+. |+..++.|.+.
T Consensus 109 ~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 149 (303)
T TIGR02649 109 WTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 149 (303)
T ss_pred ccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEe
Confidence 1123345677788888888888888775 77778888874
No 26
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.10 E-value=1.7e-09 Score=104.61 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=78.6
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh-CCCCEEEeCHhHH---HHhccCCCCCCc-
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTM---RRIGKDDWSLGY- 304 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~-~p~a~V~~~~~~~---~~l~~~~~~~~~- 304 (439)
+..+|||+|... +.+. ....++++|++||.|.||++|+..+... .+..+||++.... +...... ...+
T Consensus 46 ~~~iLiD~G~~~-----~~~~-~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~-~~~~~ 118 (250)
T PRK11244 46 GARTLIDAGLPD-----LAER-FPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHPG-ILDFS 118 (250)
T ss_pred CCEEEEECCChH-----Hhhc-CCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCcc-ccccc
Confidence 558999999532 2221 2345677999999999999999777432 2467899987542 1111111 1122
Q ss_pred eecCCCceEEECCeEEEEEeCCCCCCCCEEEEEC--CccEEEEcccc
Q 013637 305 TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 349 (439)
Q Consensus 305 ~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~--~~~iLftGD~l 349 (439)
..++.++.+.+|+.+++.+.++ |+.++++|.+. +.+++|+||+.
T Consensus 119 ~~l~~~~~~~~~~~~I~~~~~~-H~~~s~g~~i~~~~~~i~ysgDt~ 164 (250)
T PRK11244 119 HPLEPFEPFDLGGLQVTPLPLN-HSKLTFGYLLETAHSRVAYLTDTV 164 (250)
T ss_pred cccCCCCCeeECCEEEEEEeeC-CCcceeEEEEecCCeEEEEEcCCC
Confidence 3477889999999999988875 88888998885 34699999984
No 27
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.09 E-value=1.6e-09 Score=103.96 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh-CCCCEEEeCHhHHHH---hccCCCCCCc-
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRR---IGKDDWSLGY- 304 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~-~p~a~V~~~~~~~~~---l~~~~~~~~~- 304 (439)
+..+|||+|... +.+. ....++++|++||.|.||++|+..+... ..+.+||+++.+... +..... ..+
T Consensus 36 ~~~iliD~G~~~-----~~~~-~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~ 108 (238)
T TIGR03307 36 GARTLIDAGLTD-----LAER-FPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGI-LDFS 108 (238)
T ss_pred CcEEEEECCChh-----Hhhc-cCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCccc-cccc
Confidence 568999999542 1211 2345677999999999999999766543 246789998765321 111111 122
Q ss_pred eecCCCceEEECCeEEEEEeCCCCCCCCEEEEEC--CccEEEEcccc
Q 013637 305 TSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 349 (439)
Q Consensus 305 ~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~--~~~iLftGD~l 349 (439)
..+..++.+.+++.+|+.+++. |+.++++|.+. +.+++|+||+-
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~-H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 109 KPLEAFEPFDLGGLRVTPLPLV-HSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred ccccCCceEEECCEEEEEEecC-CCCcceEEEEecCCcEEEEEecCC
Confidence 2377889999999998888775 88888888885 44799999984
No 28
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.03 E-value=2.2e-09 Score=106.79 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=81.6
Q ss_pred eEEEcCCCCCcHHHHHHHHH-------HcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccC-C-C--
Q 013637 232 ALIVDPGCRSEFHEELLKVV-------ASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKD-D-W-- 300 (439)
Q Consensus 232 ~vLID~G~~~~~~~~l~~~~-------~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~-~-~-- 300 (439)
.+|||+|++.. .++.+.. ..+.++++||+||.|+||+.|+..|+.. ...+||+++.+.+.+... . +
T Consensus 51 ~iLiD~G~g~~--~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~-~~l~Vyg~~~~~~~l~~~~~~f~~ 127 (302)
T PRK05184 51 WVLLNASPDIR--QQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREG-QPFPVYATPAVLEDLSTGFPIFNV 127 (302)
T ss_pred EEEEECChhHH--HHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccC-CCeEEEeCHHHHHHHHhcCCcccc
Confidence 69999997744 3444431 1334678999999999999999998664 478899999988877542 0 0
Q ss_pred -----CCCceecCCCceEEEC---CeEEEEEeCC------------CCCCCCEEEEEC---C-ccEEEEccc
Q 013637 301 -----SLGYTSVSGSEDICVG---GQRLTVVFSP------------GHTDGHVALLHA---S-TNSLIVGDH 348 (439)
Q Consensus 301 -----~~~~~~v~~g~~l~lG---g~~l~vi~tp------------GHt~g~~~l~~~---~-~~iLftGD~ 348 (439)
...+..+..++.+.++ +.+|+.+.++ -|...++.|.++ + .+++|++|.
T Consensus 128 ~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~ 199 (302)
T PRK05184 128 LDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGL 199 (302)
T ss_pred cccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCC
Confidence 1234567778888886 7889888875 145567888883 2 359999775
No 29
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.01 E-value=2.1e-09 Score=106.80 Aligned_cols=115 Identities=15% Similarity=0.223 Sum_probs=82.1
Q ss_pred CeEEEcCCCCCcHHHHHHHHH-------HcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCC----
Q 013637 231 EALIVDPGCRSEFHEELLKVV-------ASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD---- 299 (439)
Q Consensus 231 ~~vLID~G~~~~~~~~l~~~~-------~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~---- 299 (439)
..+|||+|++.. .++.... ....++++||+||.|.||+.|+..+++.. ..+||+++.+.+.+.+..
T Consensus 49 ~~iLID~Gpd~r--~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~~t~~~L~~~~~~~~ 125 (302)
T TIGR02108 49 RWVLLNASPDIR--QQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATEMVLQDLSDNPIFNV 125 (302)
T ss_pred EEEEEECCHHHH--HHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECHHHHHHHHhCCCccc
Confidence 389999998754 3333332 22557789999999999999999997664 799999999998885311
Q ss_pred ---CCCCceecCCCceEEEC-----CeEEEEEeCCC-------C------CCCCEEEEECC----ccEEEEccc
Q 013637 300 ---WSLGYTSVSGSEDICVG-----GQRLTVVFSPG-------H------TDGHVALLHAS----TNSLIVGDH 348 (439)
Q Consensus 300 ---~~~~~~~v~~g~~l~lG-----g~~l~vi~tpG-------H------t~g~~~l~~~~----~~iLftGD~ 348 (439)
+......++.++.+.++ +.+|+.+.+++ | ..+.+.|.+.. .+++|++|+
T Consensus 126 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~ 199 (302)
T TIGR02108 126 LDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGC 199 (302)
T ss_pred cchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCC
Confidence 11222456667777664 48888888871 3 23577888853 459999997
No 30
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.99 E-value=6.5e-10 Score=102.26 Aligned_cols=116 Identities=21% Similarity=0.317 Sum_probs=79.4
Q ss_pred eEEEcCCCCCcHHHHHH-HHHHc---CCCccEEEeCCCchhhhcChHHHHHh---CCCCEEEeCHhHHHHhc--cCC---
Q 013637 232 ALIVDPGCRSEFHEELL-KVVAS---LPRKLIVFVTHHHRDHVDGLSIIQKC---NPDAILLAHENTMRRIG--KDD--- 299 (439)
Q Consensus 232 ~vLID~G~~~~~~~~l~-~~~~~---~~~i~~VilTH~H~DHigG~~~l~~~---~p~a~V~~~~~~~~~l~--~~~--- 299 (439)
.+|||||.+.. .-.+. +.... +.++++|++||.|.||+.|+..+... .++ +||+++.+.+.+. ...
T Consensus 2 ~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~ 79 (194)
T PF12706_consen 2 RILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILD 79 (194)
T ss_dssp EEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHT
T ss_pred EEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhccccc
Confidence 58999999754 11112 12222 23667999999999999997665442 334 9999998888776 211
Q ss_pred -----CCCCceecCCCceEEECCeEEEEEeCCCCCCCCEE----EEEC--CccEEEEccccc
Q 013637 300 -----WSLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVA----LLHA--STNSLIVGDHCV 350 (439)
Q Consensus 300 -----~~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~----l~~~--~~~iLftGD~l~ 350 (439)
.......+..++.+++++.+++.+++. |..+..+ |.++ +.+++|+||+-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 80 LYPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp TCCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred ccccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEecCCcceEEeeccch
Confidence 112345678888999999999999775 7777765 6553 578999999854
No 31
>PRK02126 ribonuclease Z; Provisional
Probab=98.97 E-value=6.7e-09 Score=104.58 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=76.4
Q ss_pred cccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhC----C
Q 013637 206 TTNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCN----P 281 (439)
Q Consensus 206 ~~N~y~i~~~~g~~~~~~s~~vi~g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~----p 281 (439)
.+|+|++.... ++..+|||||. ...+.+ ..+.++.+|++||.|.||++|+..|.... +
T Consensus 15 ~dn~~~l~~~~------------~~~~iLiD~G~----~~~l~~--~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~ 76 (334)
T PRK02126 15 DDPGLYVDFLF------------ERRALLFDLGD----LHHLPP--RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPR 76 (334)
T ss_pred CCcEEEEEECC------------CCeEEEEcCCC----HHHHhh--cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCC
Confidence 36777775432 15689999998 122322 24567789999999999999999987653 4
Q ss_pred CCEEEeCHhHHHHhccCC----C------C--CCce--e--------------------------cCCCceEEECCeEEE
Q 013637 282 DAILLAHENTMRRIGKDD----W------S--LGYT--S--------------------------VSGSEDICVGGQRLT 321 (439)
Q Consensus 282 ~a~V~~~~~~~~~l~~~~----~------~--~~~~--~--------------------------v~~g~~l~lGg~~l~ 321 (439)
.++||+++.+.+.+...- + . +... . ..++..+..++.+|+
T Consensus 77 ~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 156 (334)
T PRK02126 77 RLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVR 156 (334)
T ss_pred CeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEE
Confidence 579999998877653311 0 0 1111 1 113444666788888
Q ss_pred EEeCCCCCCCCEEEEEC
Q 013637 322 VVFSPGHTDGHVALLHA 338 (439)
Q Consensus 322 vi~tpGHt~g~~~l~~~ 338 (439)
.+.+. |+..+++|.+.
T Consensus 157 a~~~~-H~vp~~gy~~~ 172 (334)
T PRK02126 157 AAFLD-HGIPCLAFALE 172 (334)
T ss_pred EEEcc-CCCceeEEEEE
Confidence 88887 77667777664
No 32
>PRK04286 hypothetical protein; Provisional
Probab=98.93 E-value=5.4e-09 Score=103.82 Aligned_cols=120 Identities=13% Similarity=0.181 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCC---------------cHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHH----------HhCCCCE
Q 013637 230 GEALIVDPGCRS---------------EFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQ----------KCNPDAI 284 (439)
Q Consensus 230 g~~vLID~G~~~---------------~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~----------~~~p~a~ 284 (439)
+..+|||+|... ...+.+.++...+.++++||+||.|.||++|+..+. ..+...+
T Consensus 24 ~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~ 103 (298)
T PRK04286 24 DVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKI 103 (298)
T ss_pred CeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCce
Confidence 458999999552 122334444555667889999999999999887641 1222223
Q ss_pred EEe-CHhH-H---HHhccCCC------CCCceecCCCceEEECCeEEEEEeCCCCCCC--CEEE----EE--CCccEEEE
Q 013637 285 LLA-HENT-M---RRIGKDDW------SLGYTSVSGSEDICVGGQRLTVVFSPGHTDG--HVAL----LH--ASTNSLIV 345 (439)
Q Consensus 285 V~~-~~~~-~---~~l~~~~~------~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g--~~~l----~~--~~~~iLft 345 (439)
++. +... . .......+ ......+..++.+.+|+.++++...-.|... .+.+ .+ .+.+++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~ 183 (298)
T PRK04286 104 VLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFA 183 (298)
T ss_pred ecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEE
Confidence 332 1111 0 00000001 0123456788899999988887754346432 3322 22 34579999
Q ss_pred cccc
Q 013637 346 GDHC 349 (439)
Q Consensus 346 GD~l 349 (439)
||+-
T Consensus 184 gDt~ 187 (298)
T PRK04286 184 SDVQ 187 (298)
T ss_pred CCCC
Confidence 9986
No 33
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.88 E-value=3.3e-08 Score=100.20 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=96.2
Q ss_pred CCCccEEEeCCCchhhhc--ChHHHHHhC-CCCEEEeCHhHHHHhccCCCC-CCceecCCCceEEECCeEEEEEeC----
Q 013637 254 LPRKLIVFVTHHHRDHVD--GLSIIQKCN-PDAILLAHENTMRRIGKDDWS-LGYTSVSGSEDICVGGQRLTVVFS---- 325 (439)
Q Consensus 254 ~~~i~~VilTH~H~DHig--G~~~l~~~~-p~a~V~~~~~~~~~l~~~~~~-~~~~~v~~g~~l~lGg~~l~vi~t---- 325 (439)
++++++|++||.|.||+. .+..+.+.. ++++++++....+.+.....+ .....++.|+.+.+++.+|+++++
T Consensus 107 i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~ 186 (355)
T PRK11709 107 IREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRT 186 (355)
T ss_pred CCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEeccccc
Confidence 456779999999999994 334454443 467899988877765543332 346778999999999999998865
Q ss_pred -----C-CCCCC-----------CEEEEE--CCccEEEEccccccCc--------ccccccCCCCC-------HHHHHHH
Q 013637 326 -----P-GHTDG-----------HVALLH--ASTNSLIVGDHCVGQG--------SAVLDITAGGN-------MTDYFQS 371 (439)
Q Consensus 326 -----p-GHt~g-----------~~~l~~--~~~~iLftGD~l~~~~--------~~~~~~~~~~~-------~~~~~~s 371 (439)
| .|+.+ .++|++ ++.+++|+||+.+... ...+...+.+. .-...+.
T Consensus 187 ~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~ea 266 (355)
T PRK11709 187 ALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTSIDI 266 (355)
T ss_pred cccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCHHHH
Confidence 1 22211 245555 5678999999864320 01110001110 1112355
Q ss_pred HHHHHcCCCCEEEeCCCCCCC----ChHHHHHHHHHHHHhhh
Q 013637 372 TYKFLELSPHALIPMHGRVNL----WPKHMLCGYLKYERQLF 409 (439)
Q Consensus 372 L~rL~~l~~~~IvPgHG~~~~----~~~~~i~~~L~~~~~~~ 409 (439)
++..+.+.++.++|.|-.... +|.+ +.++.+.++.+.
T Consensus 267 ~~~a~~l~ak~vIpiH~dtf~~~~~dp~~-~~~~~~~~~~~~ 307 (355)
T PRK11709 267 LRMAESLNAKVVIPVHHDIWSNFQADPQE-ILVLWKMRKDRL 307 (355)
T ss_pred HHHHHHcCCCEEEEEChhhccccccCHHH-HHHHHHhhhhhc
Confidence 666677899999999976533 4443 445555555443
No 34
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.86 E-value=3.2e-08 Score=97.36 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=78.8
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHc--CCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHH--HhccCCCCCCce
Q 013637 230 GEALIVDPGCRSEFHEELLKVVAS--LPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMR--RIGKDDWSLGYT 305 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~--~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~--~l~~~~~~~~~~ 305 (439)
+..+++|+|.... ...+..++++ +.+++.+|+||.|.||+||+..+.+.++--++|+...... ............
T Consensus 63 ~~~~l~dtg~~~~-~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~ 141 (293)
T COG2333 63 GKTILYDTGNSMG-QDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTSTFVLRDAGIPVR 141 (293)
T ss_pred CceEEeecCcccC-ceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccchhhhhhcCCcee
Confidence 3489999999311 1233444444 4467899999999999999999999543344555332211 110111234556
Q ss_pred ecCCCceEEECCeEEEEEeCCCCC-----CCCEEEEEC--CccEEEEccc
Q 013637 306 SVSGSEDICVGGQRLTVVFSPGHT-----DGHVALLHA--STNSLIVGDH 348 (439)
Q Consensus 306 ~v~~g~~l~lGg~~l~vi~tpGHt-----~g~~~l~~~--~~~iLftGD~ 348 (439)
..+.|+.+.+++..++++...+.+ ..++++++. +.++|||||.
T Consensus 142 ~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~ 191 (293)
T COG2333 142 SCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDL 191 (293)
T ss_pred ccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCC
Confidence 778899999999999999665432 346666664 4579999996
No 35
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.5e-09 Score=108.56 Aligned_cols=127 Identities=21% Similarity=0.253 Sum_probs=86.6
Q ss_pred CceEEEe--cCCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhcc--
Q 013637 222 GNHRFVA--QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK-- 297 (439)
Q Consensus 222 ~~s~~vi--~g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~-- 297 (439)
+.++..+ .+..+++|+|................++++.|++||.|.||+|+++.+....=+.+||++..+....+-
T Consensus 13 g~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l 92 (427)
T COG1236 13 GRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLL 92 (427)
T ss_pred CcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHH
Confidence 3344443 456999999987652210000000112467999999999999999998774325789999887654421
Q ss_pred ------CC----C----------CCCceecCCCceEEECCeEEEEEeCCCCCCCCEEEEEC--CccEEEEcccc
Q 013637 298 ------DD----W----------SLGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDHC 349 (439)
Q Consensus 298 ------~~----~----------~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~--~~~iLftGD~l 349 (439)
.. . ....+++.-|+++++++.+++++++ ||.+|+..+.++ +++++||||.-
T Consensus 93 ~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~~~~~ilytGD~~ 165 (427)
T COG1236 93 GDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEVDGGRILYTGDVK 165 (427)
T ss_pred HHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEeCCceEEEEeccC
Confidence 10 0 0123458889999999977777765 899999998885 56799999973
No 36
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.68 E-value=1.4e-07 Score=96.49 Aligned_cols=133 Identities=19% Similarity=0.118 Sum_probs=85.0
Q ss_pred CCCCCCceEEEe-cC-CeEEEcCCCCCcHH-----HHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCH
Q 013637 217 VSDDCGNHRFVA-QG-EALIVDPGCRSEFH-----EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHE 289 (439)
Q Consensus 217 g~~~~~~s~~vi-~g-~~vLID~G~~~~~~-----~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~ 289 (439)
|.+.-+-+++++ +. ..||+|||.+.... ..+.--......+++|++||+|.||+|-++.|.+..-+-+|||++
T Consensus 188 g~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~ 267 (637)
T COG1782 188 GFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTP 267 (637)
T ss_pred cchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeCC
Confidence 344455566665 33 38999999765421 111101112224679999999999999999988765577999999
Q ss_pred hHHHHhc-----------cCCCCC------------CceecCCCceEEE-CCeEEEEEeCCCCCCCCEEEEE--CC--cc
Q 013637 290 NTMRRIG-----------KDDWSL------------GYTSVSGSEDICV-GGQRLTVVFSPGHTDGHVALLH--AS--TN 341 (439)
Q Consensus 290 ~~~~~l~-----------~~~~~~------------~~~~v~~g~~l~l-Gg~~l~vi~tpGHt~g~~~l~~--~~--~~ 341 (439)
.+.+.+. +.+... ..++++-|+.-++ .+.++++.. .||--|+-+..+ .+ -+
T Consensus 268 PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~N-AGHILGSA~~HlHIGdGlyN 346 (637)
T COG1782 268 PTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYN-AGHILGSAMAHLHIGDGLYN 346 (637)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEec-ccchhcceeeEEEecCCcee
Confidence 8866541 111111 1245666666666 356677666 489999877555 33 36
Q ss_pred EEEEccccc
Q 013637 342 SLIVGDHCV 350 (439)
Q Consensus 342 iLftGD~l~ 350 (439)
++||||.=+
T Consensus 347 i~yTGDfk~ 355 (637)
T COG1782 347 IVYTGDFKF 355 (637)
T ss_pred EEEeccccc
Confidence 999999743
No 37
>PRK00055 ribonuclease Z; Reviewed
Probab=98.64 E-value=7.8e-08 Score=93.34 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh------CCCCEEEeCHhHHHHh
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRI 295 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~------~p~a~V~~~~~~~~~l 295 (439)
+..+|||+|.+.. ..+.+......++++||+||.|+||++|+..+... ....+||+++...+.+
T Consensus 29 ~~~iLiD~G~g~~--~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~ 98 (270)
T PRK00055 29 GELFLFDCGEGTQ--RQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFV 98 (270)
T ss_pred CcEEEEECCHHHH--HHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHH
Confidence 5589999998743 33333222334677999999999999999877632 1346799987765544
No 38
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=6.3e-08 Score=93.22 Aligned_cols=147 Identities=21% Similarity=0.268 Sum_probs=93.3
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~ 309 (439)
++.+++|+|.+ .+.+.....+.|..+++||.|++|+|++..|. ..+++.+. .... ........+++
T Consensus 104 ~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~----~sp~l~~s--~e~~---gr~~~pt~l~e 169 (302)
T KOG4736|consen 104 GDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP----QSPILYHS--MEYI---GRHVTPTELDE 169 (302)
T ss_pred CceEEEecCCc-----hhhhcCcChhhcceeEEeccCccccccccccc----CCHHHhhh--hhhc---CCccChhhhcc
Confidence 44889999987 44555556778889999999999999998883 44443332 1111 11233345677
Q ss_pred CceEEECCeEEEEEeCCCCCCCCEEEEECC----ccEEEEccccccCcccccc--cCC-C--CCHHHHHHHHHHHHcCCC
Q 013637 310 SEDICVGGQRLTVVFSPGHTDGHVALLHAS----TNSLIVGDHCVGQGSAVLD--ITA-G--GNMTDYFQSTYKFLELSP 380 (439)
Q Consensus 310 g~~l~lGg~~l~vi~tpGHt~g~~~l~~~~----~~iLftGD~l~~~~~~~~~--~~~-~--~~~~~~~~sL~rL~~l~~ 380 (439)
+..+.++ -.+++..|||||.-.+.+++.+ +.+.++||++-......-. ... . .+...-+++-+++. --+
T Consensus 170 ~~~~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~dlde~d~i~~~e~s~d~~~kr~~r~~~v-~l~ 247 (302)
T KOG4736|consen 170 RPYLKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPREEDLDEKDDIMSQEGSEDNAAKRQSRNRYV-CLA 247 (302)
T ss_pred CCccccC-CceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCCccccchhhhhhhccCCchhhhhhhhhcEE-EEe
Confidence 7788887 4688889999999999888853 4699999986432211110 000 0 11111222222221 135
Q ss_pred CEEEeCCCCCCC
Q 013637 381 HALIPMHGRVNL 392 (439)
Q Consensus 381 ~~IvPgHG~~~~ 392 (439)
|+|+||||++..
T Consensus 248 D~ivpgHg~~f~ 259 (302)
T KOG4736|consen 248 DWIVPGHGPPFR 259 (302)
T ss_pred eeeecCCCCcee
Confidence 789999999776
No 39
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.37 E-value=1.8e-06 Score=77.84 Aligned_cols=93 Identities=24% Similarity=0.400 Sum_probs=52.7
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCC
Q 013637 230 GEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSG 309 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~ 309 (439)
+..+||||..... .......++++|++||.|.||+.--. +++. ......+..
T Consensus 16 g~~iliDP~~~~~------~~~~~~~~~D~IlisH~H~DH~~~~~-l~~~---------------------~~~~~vv~~ 67 (163)
T PF13483_consen 16 GKRILIDPWFSSV------GYAPPPPKADAILISHSHPDHFDPET-LKRL---------------------DRDIHVVAP 67 (163)
T ss_dssp TEEEEES--TTT--------T-TSS-B-SEEEESSSSTTT-CCCC-CCCH---------------------HTSSEEE-T
T ss_pred CEEEEECCCCCcc------CcccccCCCCEEEECCCccccCChhH-hhhc---------------------ccccEEEcc
Confidence 5589999996421 01111256679999999999997521 1111 123345566
Q ss_pred CceEEECCeEEEEEeCC-----CCCCC-CEEEEE--CCccEEEEccccc
Q 013637 310 SEDICVGGQRLTVVFSP-----GHTDG-HVALLH--ASTNSLIVGDHCV 350 (439)
Q Consensus 310 g~~l~lGg~~l~vi~tp-----GHt~g-~~~l~~--~~~~iLftGD~l~ 350 (439)
++.+++++.+++.+.+. ++..+ .++|++ ++.++++.||+..
T Consensus 68 ~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~ 116 (163)
T PF13483_consen 68 GGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGF 116 (163)
T ss_dssp TEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S
T ss_pred ceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCcc
Confidence 78899999888888543 45445 456666 3557999999864
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.29 E-value=8.6e-06 Score=79.10 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=91.6
Q ss_pred CCeEEEcCCCCCcHHHHHH---HHHHcCCCccEEEeCCCchhhhcChHHHHHhCC-CCEEEeCHhHHHHh-ccCCCCCCc
Q 013637 230 GEALIVDPGCRSEFHEELL---KVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNP-DAILLAHENTMRRI-GKDDWSLGY 304 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~---~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p-~a~V~~~~~~~~~l-~~~~~~~~~ 304 (439)
+..+||||..+......-. ........+++|++||.|.||++.......... .+.++.+....... ...-.....
T Consensus 23 ~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~ 102 (258)
T COG2220 23 GKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLGAGDLLIRDGVEAERV 102 (258)
T ss_pred CEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHHHHHHHHhcCCCcceE
Confidence 4479999998754111100 112234567899999999999998877666533 34455555543433 222222345
Q ss_pred eecCCCceEEECCeEEEEE---eCCC-CCCC--------CEEEEE--CCccEEEEccccccC--c---c--cccccCCCC
Q 013637 305 TSVSGSEDICVGGQRLTVV---FSPG-HTDG--------HVALLH--ASTNSLIVGDHCVGQ--G---S--AVLDITAGG 363 (439)
Q Consensus 305 ~~v~~g~~l~lGg~~l~vi---~tpG-Ht~g--------~~~l~~--~~~~iLftGD~l~~~--~---~--~~~~~~~~~ 363 (439)
..+..|+++.+++.++.++ +.+. |+++ .+++.+ ++.++++.||+-+.. . . ..+...|.+
T Consensus 103 ~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~~~~~~~~~~~DvallPig 182 (258)
T COG2220 103 HELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLFLIIEELDGPVDVALLPIG 182 (258)
T ss_pred EeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHHHHhhhhhcCCccEEEeccC
Confidence 6677889999988776554 3322 3322 344444 456899999984211 0 0 111111222
Q ss_pred C-----HHHHHHHHHHHHcCCCCEEEeCCCC
Q 013637 364 N-----MTDYFQSTYKFLELSPHALIPMHGR 389 (439)
Q Consensus 364 ~-----~~~~~~sL~rL~~l~~~~IvPgHG~ 389 (439)
. +....+.....+.++++.++|.|-.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 183 GYPNATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred CCCCCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 2 2222344444467899999999954
No 41
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.24 E-value=4e-06 Score=81.68 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCceEEEecCCeEEEc-CCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHH-------hCCCCEEEeCHhHH
Q 013637 221 CGNHRFVAQGEALIVD-PGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQK-------CNPDAILLAHENTM 292 (439)
Q Consensus 221 ~~~s~~vi~g~~vLID-~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~-------~~p~a~V~~~~~~~ 292 (439)
...|.+++....+|+| +|.+.. ..+..++..+++||+||.|.||++|+..+.- .-+...||.++...
T Consensus 9 ~~~t~~~~~~~~ilfD~ag~g~~-----~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~ 83 (277)
T TIGR02650 9 AFFSTIIYSPEEIIFDAAEEGSS-----TLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGN 83 (277)
T ss_pred hheEEEEECchhheehhhcccch-----hHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchh
Confidence 3455666666789999 888765 2344566677899999999999999954432 12345699987754
Q ss_pred HHhc-------cC----CCCCCceecCCCceEEEC-C---eEEEEEeCCCCC
Q 013637 293 RRIG-------KD----DWSLGYTSVSGSEDICVG-G---QRLTVVFSPGHT 329 (439)
Q Consensus 293 ~~l~-------~~----~~~~~~~~v~~g~~l~lG-g---~~l~vi~tpGHt 329 (439)
+... .. ........+..|+.+.+. + ..++.+.|- |+
T Consensus 84 ~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~-H~ 134 (277)
T TIGR02650 84 AAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRK-HH 134 (277)
T ss_pred HHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCccc-cc
Confidence 4332 11 112333445666666554 2 445555554 44
No 42
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.84 E-value=0.00026 Score=67.26 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=88.4
Q ss_pred EEecCC-eEEEcCCCCCc-----------HHHHHHHHHH----cCCCccEEEeCCCchhhhcC---------hHHHHHhC
Q 013637 226 FVAQGE-ALIVDPGCRSE-----------FHEELLKVVA----SLPRKLIVFVTHHHRDHVDG---------LSIIQKCN 280 (439)
Q Consensus 226 ~vi~g~-~vLID~G~~~~-----------~~~~l~~~~~----~~~~i~~VilTH~H~DHigG---------~~~l~~~~ 280 (439)
|+.+++ .||||+|-+.. ..+.+.+... -..+...|.+||.|.||.-- ...-.+.|
T Consensus 19 ~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~eiY 98 (304)
T COG2248 19 FVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKEIY 98 (304)
T ss_pred eeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchHHHh
Confidence 444455 79999995421 1222222221 22344589999999999865 11222333
Q ss_pred CCCEEEe-CHh-HHHH---------hccCCCCCCceecCCCceEEECCeEEEEEeCCCCCCC-C-----EEEEE--CCcc
Q 013637 281 PDAILLA-HEN-TMRR---------IGKDDWSLGYTSVSGSEDICVGGQRLTVVFSPGHTDG-H-----VALLH--ASTN 341 (439)
Q Consensus 281 p~a~V~~-~~~-~~~~---------l~~~~~~~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g-~-----~~l~~--~~~~ 341 (439)
.+-.+++ |+. ..+. +..-........+-+|.++.+|+.++++-+.--|-++ + +.+.+ .+.+
T Consensus 99 ~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~ 178 (304)
T COG2248 99 KGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSS 178 (304)
T ss_pred cCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeE
Confidence 3333333 221 1111 1111111223567899999999999999855335554 3 22333 3457
Q ss_pred EEEEcccccc----------Cccc---ccccCCC---------CCHHHHHHHHHHHHcCCCCEEEeCCCC
Q 013637 342 SLIVGDHCVG----------QGSA---VLDITAG---------GNMTDYFQSTYKFLELSPHALIPMHGR 389 (439)
Q Consensus 342 iLftGD~l~~----------~~~~---~~~~~~~---------~~~~~~~~sL~rL~~l~~~~IvPgHG~ 389 (439)
++|+.|.=-+ ...+ .++.++. .+.+.-++.|++|.+....+++--|--
T Consensus 179 i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHl 248 (304)
T COG2248 179 IVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHL 248 (304)
T ss_pred EEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehh
Confidence 9999997211 1111 1122221 355666777888887777776666654
No 43
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=97.84 E-value=3e-05 Score=76.03 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=77.1
Q ss_pred CCceEEE--ecCCeEEEcCCCCCcHH--HHHH--HHHHcCC----CccEEEeCCCchhhhcChHHHHHhC-CCCEEEeCH
Q 013637 221 CGNHRFV--AQGEALIVDPGCRSEFH--EELL--KVVASLP----RKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLAHE 289 (439)
Q Consensus 221 ~~~s~~v--i~g~~vLID~G~~~~~~--~~l~--~~~~~~~----~i~~VilTH~H~DHigG~~~l~~~~-p~a~V~~~~ 289 (439)
-+.+|.+ +.|+.+++|+|..-... +.+- .++.+.+ -++-||+||.|.||+|+++++.+.. -+-+||++-
T Consensus 15 vGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~ 94 (501)
T KOG1136|consen 15 VGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTY 94 (501)
T ss_pred cCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceEEec
Confidence 3445555 36789999999542210 1111 1111222 2457999999999999999998852 267888876
Q ss_pred hHHHHh----------c---cCCCC-----------CCceecCCCceEEEC-CeEEEEEeCCCCCCCCEEEEE--CCccE
Q 013637 290 NTMRRI----------G---KDDWS-----------LGYTSVSGSEDICVG-GQRLTVVFSPGHTDGHVALLH--ASTNS 342 (439)
Q Consensus 290 ~~~~~l----------~---~~~~~-----------~~~~~v~~g~~l~lG-g~~l~vi~tpGHt~g~~~l~~--~~~~i 342 (439)
.+.... . ++... .....+.-.+++.++ +..++.+. .||--|..++++ .+..+
T Consensus 95 PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayY-AGHVLGAaMf~ikvGd~sv 173 (501)
T KOG1136|consen 95 PTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYY-AGHVLGAAMFYIKVGDQSV 173 (501)
T ss_pred chhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeee-cccccceeEEEEEecceeE
Confidence 553221 0 01000 112334445566663 34455555 589999999888 46789
Q ss_pred EEEcccc
Q 013637 343 LIVGDHC 349 (439)
Q Consensus 343 LftGD~l 349 (439)
++|||.-
T Consensus 174 vYTGDYn 180 (501)
T KOG1136|consen 174 VYTGDYN 180 (501)
T ss_pred EEecCcc
Confidence 9999963
No 44
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.77 E-value=0.00013 Score=72.39 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=46.6
Q ss_pred cCCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh------CCCCEEEeCHhHHHHh
Q 013637 229 QGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC------NPDAILLAHENTMRRI 295 (439)
Q Consensus 229 ~g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~------~p~a~V~~~~~~~~~l 295 (439)
.++.+|||||.+.. .++........++++|++||.|.||+.|+..+... .....||.+....+.+
T Consensus 28 ~~~~~L~DcGeGt~--~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~ 98 (292)
T COG1234 28 EGEKFLFDCGEGTQ--HQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFV 98 (292)
T ss_pred CCeeEEEECCHhHH--HHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhh
Confidence 36688999998865 45555544555778999999999999999865432 2235788886544433
No 45
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=97.74 E-value=5e-05 Score=65.08 Aligned_cols=114 Identities=20% Similarity=0.320 Sum_probs=93.1
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
..++|-|+.+ ++||+|++..+. .....|.+|++.+.. +|. . .+++..++
T Consensus 5 v~~ii~~~~~--~vLl~~r~~~~~---------~~~~~~~~pgG~i~~--~E~---~---------------~~aa~REl 53 (134)
T PF00293_consen 5 VGVIIFNEDG--KVLLIKRSRSPI---------TFPGYWELPGGGIEP--GES---P---------------EEAARREL 53 (134)
T ss_dssp EEEEEEETTT--EEEEEEESTTSS---------SSTTEEESSEEEECT--TSH---H---------------HHHHHHHH
T ss_pred EEEEEEeCCc--EEEEEEecCCCC---------CCCCeEecceeeEEc--CCc---h---------------hhhHHhhh
Confidence 3457777764 999999999887 345679999999887 333 1 36789999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCCc------ccccccccccCHHHHHHHHHhcC
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~------~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
.++.|+.+....+.....|.++. ..+.+..+.||++.++.+. ..|.....|+++++++++....+
T Consensus 54 ~EE~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 124 (134)
T PF00293_consen 54 KEETGLDVSPLELLGLFSYPSPS--GDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGR 124 (134)
T ss_dssp HHHHSEEEEEEEEEEEEEEEETT--TESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTH
T ss_pred hhcccceecccccceeeeecccC--CCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcc
Confidence 99999999888889999999988 5456899999999999883 24889999999999999877653
No 46
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.73 E-value=6.1e-05 Score=73.70 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=38.9
Q ss_pred CCeEEEcCCCCCcHHHHHHHHHH-cCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhH
Q 013637 230 GEALIVDPGCRSEFHEELLKVVA-SLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENT 291 (439)
Q Consensus 230 g~~vLID~G~~~~~~~~l~~~~~-~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~ 291 (439)
.+.++||+|.... .+... ....+++||+||.|.||+.|+..|++.+ ...++....+
T Consensus 40 ~~~~lid~g~~~~-----~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~~~~ 96 (269)
T COG1235 40 VKTLLIDAGPDLR-----DQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVNPGT 96 (269)
T ss_pred ceeEEEecChhHH-----hhhhcccccccCeEEEecccHHhhcChHHHHHHh-cCCcccccce
Confidence 4478899987632 11111 1246789999999999999999999876 5555555433
No 47
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.57 E-value=0.0005 Score=73.14 Aligned_cols=127 Identities=14% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCceEEE--ecCCeEEEcCCCCCcHH-HHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHh-CCCCEEEeCHhHHHH--
Q 013637 221 CGNHRFV--AQGEALIVDPGCRSEFH-EELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKC-NPDAILLAHENTMRR-- 294 (439)
Q Consensus 221 ~~~s~~v--i~g~~vLID~G~~~~~~-~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~-~p~a~V~~~~~~~~~-- 294 (439)
.+.-+|+ +.|-.+|||||+...+. ..+..+...+..+++|++||...-|+||+++.... +-+|+||++-+....
T Consensus 13 e~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~ 92 (764)
T KOG1135|consen 13 EGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQ 92 (764)
T ss_pred CCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhh
Confidence 3444444 45669999999987643 33344444566788999999999999999987654 346899998765332
Q ss_pred ------hcc-CC---CC-----------CCceecCCCceEEECCe----EEEEEeCCCCCCCCEEEEE--CCccEEEEcc
Q 013637 295 ------IGK-DD---WS-----------LGYTSVSGSEDICVGGQ----RLTVVFSPGHTDGHVALLH--ASTNSLIVGD 347 (439)
Q Consensus 295 ------l~~-~~---~~-----------~~~~~v~~g~~l~lGg~----~l~vi~tpGHt~g~~~l~~--~~~~iLftGD 347 (439)
+.. .+ +. -....++-.+.+.+.|. ++..++ .||+.|...+-+ ..++|+|+=|
T Consensus 93 m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itayn-AGhmiGGsIWkI~k~~E~ivYavd 171 (764)
T KOG1135|consen 93 MFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYN-AGHMIGGSIWKISKVGEDIVYAVD 171 (764)
T ss_pred hhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeec-CCCccCceEEEEEecCceEEEEEe
Confidence 111 00 00 12245666777777442 444444 589999877666 3467888888
Q ss_pred c
Q 013637 348 H 348 (439)
Q Consensus 348 ~ 348 (439)
.
T Consensus 172 ~ 172 (764)
T KOG1135|consen 172 F 172 (764)
T ss_pred c
Confidence 4
No 48
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=97.36 E-value=0.00032 Score=72.90 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=79.7
Q ss_pred CCCceEEEe--cCCeEEEcCCCCCcHHH--HHHHH-HHcCCCccEEEeCCCchhhhcChHHHHHhC-CCCEEEeCHhHHH
Q 013637 220 DCGNHRFVA--QGEALIVDPGCRSEFHE--ELLKV-VASLPRKLIVFVTHHHRDHVDGLSIIQKCN-PDAILLAHENTMR 293 (439)
Q Consensus 220 ~~~~s~~vi--~g~~vLID~G~~~~~~~--~l~~~-~~~~~~i~~VilTH~H~DHigG~~~l~~~~-p~a~V~~~~~~~~ 293 (439)
.-+.+|.++ .|+.|+.|||.-+.+.. .+--+ ...+..++.+++||.|.||++.++++.++. -.-+++..-.+..
T Consensus 24 EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkA 103 (668)
T KOG1137|consen 24 EVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKA 103 (668)
T ss_pred ccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHH
Confidence 334455554 67899999997654211 11000 113456678999999999999999987653 1445666544432
Q ss_pred Hhc---cC-----CCC---------------CCceecCCCceEEECCeEEEEEeCCCCCCCCEEEEEC--CccEEEEccc
Q 013637 294 RIG---KD-----DWS---------------LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHVALLHA--STNSLIVGDH 348 (439)
Q Consensus 294 ~l~---~~-----~~~---------------~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~~l~~~--~~~iLftGD~ 348 (439)
..+ .. ... .....+.-.++++..|.++..++ .||--|.++|.++ .-++|||||.
T Consensus 104 i~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~ 182 (668)
T KOG1137|consen 104 IYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDY 182 (668)
T ss_pred HHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEecccc
Confidence 221 10 000 11123334455667787777777 7999999988885 4579999997
Q ss_pred c
Q 013637 349 C 349 (439)
Q Consensus 349 l 349 (439)
.
T Consensus 183 s 183 (668)
T KOG1137|consen 183 S 183 (668)
T ss_pred c
Confidence 4
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.95 E-value=0.0042 Score=62.51 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=55.1
Q ss_pred EEEEccCCCCCCCCceEEEec----CCeEEEcCCCCCcHHHHHHHHH-------------------------HcCCCccE
Q 013637 209 LIVFAPDSVSDDCGNHRFVAQ----GEALIVDPGCRSEFHEELLKVV-------------------------ASLPRKLI 259 (439)
Q Consensus 209 ~y~i~~~~g~~~~~~s~~vi~----g~~vLID~G~~~~~~~~l~~~~-------------------------~~~~~i~~ 259 (439)
++.+...+|...+..+.|++. +..+-+|+|........+.... .-...+..
T Consensus 3 vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ 82 (335)
T PF02112_consen 3 VIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKG 82 (335)
T ss_pred EeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhhe
Confidence 445555666667777777763 3378899986543221111100 00123457
Q ss_pred EEeCCCchhhhcChHHHHHhC-----CCCEEEeCHhHHHHhcc
Q 013637 260 VFVTHHHRDHVDGLSIIQKCN-----PDAILLAHENTMRRIGK 297 (439)
Q Consensus 260 VilTH~H~DHigG~~~l~~~~-----p~a~V~~~~~~~~~l~~ 297 (439)
.++||.|-||+.|+-.-.... ..-+||+.+.+.+.+++
T Consensus 83 ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~ 125 (335)
T PF02112_consen 83 YLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKN 125 (335)
T ss_pred EEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHH
Confidence 999999999999985322211 24569999999888865
No 50
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=96.94 E-value=0.0034 Score=55.28 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=73.6
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHH
Q 013637 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (439)
.+|-|. +.++||+|+..+|+ ..+|++|++.++. +|. . .+++..++.+
T Consensus 18 ~vv~~~--~~~vLL~~r~~~~~-----------~~~w~lPgG~ve~--gEt---~---------------~~aa~REl~E 64 (142)
T cd04700 18 AVILNE--RNDVLLVQEKGGPK-----------KGLWHIPSGAVED--GEF---P---------------QDAAVREACE 64 (142)
T ss_pred EEEEeC--CCcEEEEEEcCCCC-----------CCeEECCceecCC--CCC---H---------------HHHHHHHHHH
Confidence 344453 33899999866552 4789999999874 332 2 4789999999
Q ss_pred HcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHHHHhcC
Q 013637 88 QLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 88 ~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
+-|+.+..... ...|.... .....+-+.+|++.+..+ ...|.....|++++++.+++...+
T Consensus 65 EtGl~~~~~~~--~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~ 130 (142)
T cd04700 65 ETGLRVRPVKF--LGTYLGRF--DDGVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQ 130 (142)
T ss_pred hhCceeeccEE--EEEEEEEc--CCCcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccc
Confidence 99999866543 33333211 123334457888888654 235888999999999998887654
No 51
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=96.93 E-value=0.0051 Score=52.78 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=71.0
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
+.++-|-..+.++||+|+..+ ....|++|++.++.=+. . .++++.++.
T Consensus 5 ~v~~~~~~~~~~vLL~~r~~~------------~~~~w~~PgG~ve~~Es-----~---------------~~aa~RE~~ 52 (129)
T cd04664 5 LVVPYRLTGEGRVLLLRRSDK------------YAGFWQSVTGGIEDGES-----P---------------AEAARREVA 52 (129)
T ss_pred EEEEEEeCCCCEEEEEEeCCC------------CCCcccccCcccCCCCC-----H---------------HHHHHHHHH
Confidence 334444323568999998765 23689999998743322 2 478999999
Q ss_pred HHcCCeeccCce-eeeeeeccCCCCCCCCeeeEEEEEeEccCCc----ccccccccccCHHHHHHHHH
Q 013637 87 EQLGFGVRDGGE-WKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN----QILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 87 ~~~gl~l~~~~~-~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~----~~e~~~~~W~~~~~al~~~~ 149 (439)
++.|+....... ..+..|++...-..+....-.+|++.+..+. ..|....+|++++++.+++.
T Consensus 53 EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 53 EETGLDPERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred HHHCCChhheEEEeecccccccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHc
Confidence 999998743332 2222232222101224455667888887663 35788999999999987643
No 52
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=96.90 E-value=0.0041 Score=53.40 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=67.7
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
..++||+++... ..|.||++.++. +| +. .+++..++.++-|+....
T Consensus 14 ~~~vLLv~~~~~--------------~~w~~PgG~ve~--~E---~~---------------~~aa~RE~~EEtG~~~~~ 59 (122)
T cd04666 14 EVEVLLVTSRRT--------------GRWIVPKGGPEK--DE---SP---------------AEAAAREAWEEAGVRGKI 59 (122)
T ss_pred ceEEEEEEecCC--------------CeEECCCCCcCC--CC---CH---------------HHHHHHHHHHHhCCcccc
Confidence 458999998532 679999999855 22 22 478999999999998765
Q ss_pred C--ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHHHHH
Q 013637 96 G--GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 96 ~--~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~~~~ 149 (439)
. .+..+....+.. ..++.+...||.+..-.. ...|.....|+++.+|++++.
T Consensus 60 ~~~~l~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 60 GKRPLGRFEYRKRSK--NRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred cceEEEEEEeeecCC--CCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcC
Confidence 5 333333332222 234678888998876444 223567899999999988764
No 53
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=96.88 E-value=0.0038 Score=53.50 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=72.7
Q ss_pred ehhhcCC-CCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 7 ALILKNP-LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
++||-++ .+..++||+|++. ..|.+|++..+. +|. . .++++.++
T Consensus 6 g~vi~~~~~~~~~vLl~~~~~---------------~~w~~PgG~ve~--gEs---~---------------~~aa~REl 50 (130)
T cd03428 6 GAIIYRRLNNEIEYLLLQASY---------------GHWDFPKGHVEP--GED---D---------------LEAALRET 50 (130)
T ss_pred EEEEEEecCCCceEEEEEccC---------------CcCcCCcCCCCC--CCC---H---------------HHHHHHHH
Confidence 3444444 3345799998875 569999887763 322 2 47899999
Q ss_pred HHHcCCeeccCcee-eeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHHHHH
Q 013637 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 86 l~~~gl~l~~~~~~-~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~~~~ 149 (439)
.++.|+.+....+. .|....... .....+.+.||++....+ ...|.....|++++++.+.+.
T Consensus 51 ~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 51 EEETGITAEQLFIVLGFKETLNYQ--VRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred HHHHCCChhhhhhhccceeEEEcc--ccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcC
Confidence 99999998865543 222222222 245678889999998754 225899999999999987654
No 54
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=96.88 E-value=0.0044 Score=53.75 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=74.8
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
.+++-|+. .++||+||..++. .+..|++|++.++. +|. . .+++..++.
T Consensus 6 ~v~~~~~~--~~iLl~~~~~~~~----------~~~~w~~PgG~ve~--gEs---~---------------~~aa~RE~~ 53 (137)
T cd03424 6 AVLPYDDD--GKVVLVRQYRPPV----------GGWLLELPAGLIDP--GED---P---------------EEAARRELE 53 (137)
T ss_pred EEEEEcCC--CeEEEEEeeecCC----------CCEEEEeCCccCCC--CCC---H---------------HHHHHHHHH
Confidence 34555555 4899999988875 34579999999887 322 2 478999999
Q ss_pred HHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC------cccccccccccCHHHHHHHHHhcC
Q 013637 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~------~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
++.|+... .+..+....... +.. ..-+.+|++..... +..|....+|++++++.+.+.+.+
T Consensus 54 EE~Gl~~~--~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 54 EETGYEAG--DLEKLGSFYPSP--GFS-DERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred HHHCCCcc--ceEEEeeEecCC--ccc-CccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 99999985 223333222222 212 22355667777665 346888899999999999988765
No 55
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=96.84 E-value=0.0075 Score=51.45 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=73.8
Q ss_pred ehhhcCCCC-CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 7 ALILKNPLN-DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
++||-++.+ ..++||+|+... ..|.||++.++. +|. . .+++..++
T Consensus 5 ~~ii~~~~~~~~~vLl~~~~~~--------------~~w~~PgG~v~~--gEs---~---------------~~aa~REl 50 (131)
T cd03673 5 GGVVFRGSDGGIEVLLIHRPRG--------------DDWSLPKGKLEP--GET---P---------------PEAAVREV 50 (131)
T ss_pred EEEEEEccCCCeEEEEEEcCCC--------------CcccCCCCccCC--CCC---H---------------HHHHHHHH
Confidence 445555532 358999998543 689999998864 222 2 47899999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~~~ 149 (439)
.++.|+.........-.+|..+.. .......+.||++....+ +..|.....|++++++.+.+.
T Consensus 51 ~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 118 (131)
T cd03673 51 EEETGIRAEVGDPLGTIRYWFSSS-GKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLS 118 (131)
T ss_pred hhhhCCceEecceEEEEEEeccCC-CCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcC
Confidence 999999877655433333433321 224566788888887765 346778999999999887643
No 56
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=96.63 E-value=0.0075 Score=52.38 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=71.0
Q ss_pred CCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCee
Q 013637 14 LNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGV 93 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l 93 (439)
+++.+|||+|++.+. ...|.||.+.++. +|. - ++++..++.++.|+.+
T Consensus 10 ~~~~~~Llvk~~~~~------------~g~W~fPgG~ve~--gEt---~---------------~eaa~REl~EEtGl~v 57 (132)
T cd04661 10 LDDTLVLLVQQKVGS------------QNHWILPQGKREE--GET---L---------------RQTAERTLKELCGNNL 57 (132)
T ss_pred ccCcEEEEEEeecCC------------CCeeECCcccccC--CCC---H---------------HHHHHHHHHHhhCCCc
Confidence 567799999986421 5689999999975 433 2 5889999999999976
Q ss_pred ccCce--eeeeeec--cCC--CCCCCCeeeEEEEEeEccCCc---ccccccccccCHHHHHHHHH
Q 013637 94 RDGGE--WKLWKCV--EEP--EFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 94 ~~~~~--~~~~~w~--~~~--~~~~~~~~dT~f~~a~~p~~~---~~e~~~~~W~~~~~al~~~~ 149 (439)
....+ .+..++. .+. .........+.||.+.+-.|+ ..|.....|++..++.+.+.
T Consensus 58 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 58 KAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQFELSQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred eEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCccccCCCcceeEecCHHHHHhhcC
Confidence 65321 1222322 221 001122356889999988772 35788999999999987653
No 57
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.62 E-value=0.0092 Score=50.54 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=67.3
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||+|+...+.. ....|+||++.++. +|. . .+++..++.++-|+.. .
T Consensus 11 ~~vLL~rR~~~~~~---------~~g~w~lPgG~ve~--gE~---~---------------~~aa~REl~EEtGl~~--~ 59 (117)
T cd04691 11 DKVLLERRSLTKNA---------DPGKLNIPGGHIEA--GES---Q---------------EEALLREVQEELGVDP--L 59 (117)
T ss_pred CEEEEEEeCCCCCC---------CCCeEECcceeecC--CCC---H---------------HHHHHHHHHHHHCCCc--c
Confidence 48999998765532 34679999999975 332 2 4789999999999985 2
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC--cccccccccccCHHHHHHHHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~--~~~e~~~~~W~~~~~al~~~~ 149 (439)
.+..+..+..+. .+..-..||++...++ ...|.....|++.+++.....
T Consensus 60 ~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 60 SYTYLCSLYHPT----SELQLLHYYVVTFWQGEIPAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred cceEEEEEeccC----CCeEEEEEEEEEEecCCCCcccccccEEcCHHHcchhhh
Confidence 223333333333 2344456788887776 447889999999998865443
No 58
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=96.60 E-value=0.0069 Score=53.67 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=67.5
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+++|-|..+ ..+||+||..++ .|.||++.++.=+ . . .+++..++
T Consensus 4 ~gaii~~~~~-~~vLLvr~~~~~--------------~W~lPGG~ve~gE--s---~---------------~~AA~REl 48 (145)
T cd03672 4 YGAIILNEDL-DKVLLVKGWKSK--------------SWSFPKGKINKDE--D---D---------------HDCAIREV 48 (145)
T ss_pred eEEEEEeCCC-CEEEEEEecCCC--------------CEECCCccCCCCc--C---H---------------HHHHHHHH
Confidence 3566666643 489999986432 6999999886432 2 2 47899999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC------cccccccccccCHHHHHHHHHhc
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINCLAEV 151 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~------~~~e~~~~~W~~~~~al~~~~~~ 151 (439)
.++-|+.+..-. ....++... .....-+.||+...+.. +..|...+.|++++++.++....
T Consensus 49 ~EETGl~v~~~~--~~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~ 115 (145)
T cd03672 49 YEETGFDISKYI--DKDDYIELI---IRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK 115 (145)
T ss_pred HHhhCccceecc--ccceeeecc---cCCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc
Confidence 999999876421 112233222 11222345555444332 23588899999999999887765
No 59
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.53 E-value=0.0087 Score=50.54 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=64.3
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.+.||+|+...+. ....|++|++.+.. +|. . .+++..++.++.|+.+...
T Consensus 11 ~~vLL~~r~~~~~----------~~~~w~lPgG~ve~--gE~---~---------------~~aa~REl~EEtGl~v~~~ 60 (120)
T cd04683 11 DEVLLQRRANTGY----------MDGQWALPAGHLEK--GED---A---------------VTAAVREAREEIGVTLDPE 60 (120)
T ss_pred CEEEEEEccCCCC----------CCCeEeCCccccCC--CCC---H---------------HHHHHHHHHHHHCCccChh
Confidence 4899999875321 25689999998864 333 2 3678899999999988755
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHHHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~~~ 149 (439)
.+.....+.... +.....=..||++....+ +.+|.....|+++++..+.++
T Consensus 61 ~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 61 DLRLAHTMHRRT--EDIESRIGLFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred heEEEEEEEecC--CCCceEEEEEEEEEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence 443332222222 112233345676655333 345778899999998766554
No 60
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=96.50 E-value=0.014 Score=51.53 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=74.6
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+.+|.|.. .+.||+|...+|. .+.|.||++.++.-+ +. .+++..++
T Consensus 15 v~~vI~~~~--g~vLl~~R~~~p~-----------~g~w~lPGG~ve~gE-----s~---------------~~aa~RE~ 61 (144)
T cd03430 15 IDLIVENED--GQYLLGKRTNRPA-----------QGYWFVPGGRIRKNE-----TL---------------TEAFERIA 61 (144)
T ss_pred EEEEEEeCC--CeEEEEEccCCCC-----------CCcEECCCceecCCC-----CH---------------HHHHHHHH
Confidence 456777653 4899988765442 257999998886532 22 47899999
Q ss_pred HHHcCCeeccC--c-eeeeeeeccCCCC--CCCCeeeEEEEEeEccCC----cccccccccccCHHHHHH
Q 013637 86 LEQLGFGVRDG--G-EWKLWKCVEEPEF--GPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 86 l~~~gl~l~~~--~-~~~~~~w~~~~~~--~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (439)
.++.|+.+... . +..+.++.+...+ +....+...+|.+.+.++ .+.|...++|+++++..+
T Consensus 62 ~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 131 (144)
T cd03430 62 KDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLA 131 (144)
T ss_pred HHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhc
Confidence 99999998766 3 3334444433222 233467788888888776 346889999999988864
No 61
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.47 E-value=0.011 Score=49.60 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=67.1
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||+|+.. ...|.+|++.+++- |. . .+++..++.++.|+.....
T Consensus 12 ~~vLl~~r~~--------------~~~w~~PgG~ve~~--Es---~---------------~~aa~REl~EEtGl~~~~~ 57 (118)
T cd04690 12 GRVLLVRKRG--------------TDVFYLPGGKIEAG--ET---P---------------LQALIRELSEELGLDLDPD 57 (118)
T ss_pred CeEEEEEECC--------------CCcEECCCCccCCC--CC---H---------------HHHHHHHHHHHHCCccChh
Confidence 3999999852 24699999877652 22 1 4779999999999988765
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC--cccccccccccCHHHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSC 144 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~--~~~e~~~~~W~~~~~a 144 (439)
.+..+..+..+....+.....+.+|++..... ...|.....|+++.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~e~ 107 (118)
T cd04690 58 SLEYLGTFRAPAANEPGVDVRATVYVAELTGEPVPAAEIEEIRWVDYDDP 107 (118)
T ss_pred heEEEEEEecccccCCCcEEEEEEEEEcccCCcCCCchhhccEEecHHHc
Confidence 56666555544322334577888999887654 3358888999999887
No 62
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=96.47 E-value=0.004 Score=64.90 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=65.2
Q ss_pred CccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCC-CC-CCceecCCCceEEECCeEEEEEeCCCCCCCCE
Q 013637 256 RKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDD-WS-LGYTSVSGSEDICVGGQRLTVVFSPGHTDGHV 333 (439)
Q Consensus 256 ~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~-~~-~~~~~v~~g~~l~lGg~~l~vi~tpGHt~g~~ 333 (439)
...+-++||.|.||..|+..-.. ..++||+..++..+...- .. ...+.+.-++.+.+.+..+.++... |.||.+
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~---~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldAn-HCPGa~ 187 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS---HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDAN-HCPGAV 187 (481)
T ss_pred ccceeeeeccccccccccccccc---CCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEeccc-cCCCce
Confidence 45588999999999988865433 334999988877664321 11 2234567778888888777777764 999999
Q ss_pred EEEECC---ccEEEEccc
Q 013637 334 ALLHAS---TNSLIVGDH 348 (439)
Q Consensus 334 ~l~~~~---~~iLftGD~ 348 (439)
+++++. ..+|.+||.
T Consensus 188 mf~F~~~~~~~~lhtGDF 205 (481)
T KOG1361|consen 188 MFLFELSFGPCILHTGDF 205 (481)
T ss_pred EEEeecCCCceEEecCCc
Confidence 998853 379999996
No 63
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=96.40 E-value=0.0088 Score=53.58 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=69.8
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
.+++.+..++.++||+|+++.++ ..+..|.+|++.++.=. |. . .+++..++.
T Consensus 6 ~v~l~~~~~~~~vLL~~R~~~~~---------~~~g~w~lPGG~ve~gd-Es---~---------------~eaa~REl~ 57 (157)
T cd03426 6 LVLLVEREGELRVLLTKRASHLR---------SHPGQVAFPGGKVDPGD-ED---P---------------VATALREAE 57 (157)
T ss_pred EEEEEeCCCceEEEEEEcccccc---------cCCCcEECCCCCcCCCc-CC---H---------------HHHHHHHHH
Confidence 45566666667999999887654 23557999999887520 22 1 478999999
Q ss_pred HHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHH
Q 013637 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~ 147 (439)
++.|+.+..-. .+.. +... .....+...+|++..... +..|.....|++++++.+.
T Consensus 58 EEtGl~~~~~~--~l~~-~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 58 EEIGLPPDSVE--VLGR-LPPY--YTRSGFVVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred HHhCCCccceE--EEEE-CCCc--cccCCCEEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCc
Confidence 99999876532 2222 1111 111134445566665442 4468889999999988763
No 64
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.35 E-value=0.017 Score=49.18 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=70.8
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
+++|.|+. .+.||+|+...|+ ...|.||++.++. +|. . .+++..++.
T Consensus 6 ~~~i~~~~--~~vLL~~r~~~~~-----------~~~w~lPgG~ve~--gEt---~---------------~eaa~RE~~ 52 (125)
T cd04679 6 GAAILRDD--GKLLLVKRLRAPE-----------AGHWGIPGGKVDW--MEA---V---------------EDAVVREIE 52 (125)
T ss_pred EEEEECCC--CEEEEEEecCCCC-----------CCeEeCCeeeccC--CCC---H---------------HHHHHHHHH
Confidence 44555543 3899999875432 3589999999875 222 1 478999999
Q ss_pred HHcCCeeccCceeee-eeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHHH
Q 013637 87 EQLGFGVRDGGEWKL-WKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCL 148 (439)
Q Consensus 87 ~~~gl~l~~~~~~~~-~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~~ 148 (439)
++.|+.+....+.-. .++.+ ..+.++-+.+|++....+ +..|...+.|+++.++.+.+
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 53 EETGLSIHSTRLLCVVDHIIE----EPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPL 116 (125)
T ss_pred HHHCCCcccceEEEEEeeccc----CCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchh
Confidence 999999866554332 22322 234566677888877655 33577899999998876543
No 65
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.34 E-value=0.022 Score=48.59 Aligned_cols=106 Identities=18% Similarity=0.253 Sum_probs=68.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+++|.|+. + ++||+|+.+ | ...|.||++.++.= |. . .+++..++
T Consensus 5 v~~~i~~~~-~-~iLL~r~~~--------~-----~~~w~lPGG~ve~g--Es---~---------------~~aa~REl 49 (125)
T cd04696 5 VGALIYAPD-G-RILLVRTTK--------W-----RGLWGVPGGKVEWG--ET---L---------------EEALKREF 49 (125)
T ss_pred EEEEEECCC-C-CEEEEEccC--------C-----CCcEeCCceeccCC--CC---H---------------HHHHHHHH
Confidence 356777764 3 899998641 1 25799999998652 22 2 47799999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~ 146 (439)
.++.|+......+.....++..+.+..+..+=+..|.+....+ .+.|...++|++.+++.+
T Consensus 50 ~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04696 50 REETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALD 113 (125)
T ss_pred HHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEecCCcccCCcccceeEEECHHHHhc
Confidence 9999998876655444333333323333333333455666543 335888999999988765
No 66
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=96.32 E-value=0.014 Score=50.42 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||+|++..| ....|.+|++.++.- |. . .+++..++.++.|+.+...
T Consensus 12 ~~vLL~~r~~~~-----------~~~~w~~PgG~ve~g--Es---~---------------~~aa~RE~~EEtGl~~~~~ 60 (137)
T cd03427 12 DKVLLLNRKKGP-----------GWGGWNGPGGKVEPG--ET---P---------------EECAIRELKEETGLTIDNL 60 (137)
T ss_pred CEEEEEEecCCC-----------CCCeEeCCceeCCCC--CC---H---------------HHHHHHHHHHhhCeEeecc
Confidence 489998887654 245699999888642 22 2 4789999999999998877
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCCc---ccccccccccCHHHHHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN---QILQEGCKWMSTQSCIN 146 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~---~~e~~~~~W~~~~~al~ 146 (439)
.+.....|..+. ...+..+.+|++....++ .+|.....|++.+++.+
T Consensus 61 ~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~ 110 (137)
T cd03427 61 KLVGIIKFPFPG---EEERYGVFVFLATEFEGEPLKESEEGILDWFDIDDLPL 110 (137)
T ss_pred eEEEEEEEEcCC---CCcEEEEEEEEECCcccccCCCCccccceEEcHhhccc
Confidence 665555454332 246788888999877772 46777899999988654
No 67
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=96.25 E-value=0.02 Score=48.62 Aligned_cols=99 Identities=21% Similarity=0.365 Sum_probs=66.6
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||+|+..+| + ...|.||++.++. +|. . .+++..++.++-|+.+...
T Consensus 11 ~~vLl~~~~~~~-~----------~~~w~lPgG~ve~--gE~---~---------------~~aa~RE~~EEtGl~~~~~ 59 (128)
T cd04684 11 GKLLLIQKNGGP-Y----------EGRWDLPGGGIEP--GES---P---------------EEALHREVLEETGLTVEIG 59 (128)
T ss_pred CEEEEEEccCCC-C----------CCeEECCCcccCC--CCC---H---------------HHHHHHHHHHHhCcEeecc
Confidence 589999998776 2 3569999999875 332 1 4789999999999998765
Q ss_pred ceeeeeeeccCCCCCC-CCeeeEEEEEeEccCCc------ccccccccccCHHHHHH
Q 013637 97 GEWKLWKCVEEPEFGP-GLTIHTVYIMGKLLDGN------QILQEGCKWMSTQSCIN 146 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~-~~~~dT~f~~a~~p~~~------~~e~~~~~W~~~~~al~ 146 (439)
.......+..+..... ....-+.+|.+....+. ..|.....|++++++.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 116 (128)
T cd04684 60 RRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIE 116 (128)
T ss_pred eeeeEEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCceeeEEECHHHhhc
Confidence 4433333333220010 11345567888887764 35778899999998864
No 68
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=96.22 E-value=0.021 Score=48.91 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=69.3
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
+.++||.+ +.++||+|+..++ ...|.||++.++. +|. . .+++..+
T Consensus 3 ~a~~iv~~---~~~vLl~~r~~~~------------~~~~~lPGG~ve~--gEt---~---------------~~aa~RE 47 (128)
T cd04687 3 SAKAVIIK---NDKILLIKHHDDG------------GVWYILPGGGQEP--GET---L---------------EDAAHRE 47 (128)
T ss_pred EEEEEEEE---CCEEEEEEEEcCC------------CCeEECCCcccCC--CCC---H---------------HHHHHHH
Confidence 34555553 3499999986432 2469999998765 222 2 4789999
Q ss_pred HHHHcCCeeccCceeeeeeeccCC-CCCCCCee--eEEEEEeEccCCc--------ccccccccccCHHHHH
Q 013637 85 ILEQLGFGVRDGGEWKLWKCVEEP-EFGPGLTI--HTVYIMGKLLDGN--------QILQEGCKWMSTQSCI 145 (439)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~-~~~~~~~~--dT~f~~a~~p~~~--------~~e~~~~~W~~~~~al 145 (439)
+.++.|+.+....+.....++... .......+ -+.||++.++.+. +.+....+|++.+++.
T Consensus 48 ~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~ 119 (128)
T cd04687 48 CKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELG 119 (128)
T ss_pred HHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhC
Confidence 999999999877665555544321 11122233 3467888887662 2345689999998763
No 69
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=96.18 E-value=0.013 Score=54.22 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=75.1
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+.++||+||-++|-.... + +.-+|.+|++.++. +|. . .+++..++.++-|+...
T Consensus 56 ~~~vlLvrq~R~~~~~~~-~----~~~~lelPaG~ve~--gE~---~---------------~~aA~REl~EEtG~~~~- 109 (185)
T TIGR00052 56 KDTVVLIEQFRIAAYVNG-E----EPWLLELSAGMVEK--GES---P---------------EDVARREAIEEAGYQVK- 109 (185)
T ss_pred CCEEEEEECceeeeeecC-C----cceEEEECcEecCC--CCC---H---------------HHHHHHHccccccceec-
Confidence 459999999999864221 0 23589999999874 332 2 47899999999999884
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC--------cccccccccccCHHHHHHHHHhcC
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--------NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~--------~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
.+.....+.+.+ +.. .--+.+|+|....+ ++.|.....|++..++++++.+++
T Consensus 110 -~~~~~~~~~~~~--g~~-~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~ 170 (185)
T TIGR00052 110 -NLRKLLSFYSSP--GGV-TELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGK 170 (185)
T ss_pred -ceEEEEEEEcCC--CCC-cEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCC
Confidence 444444444444 322 33456788875432 446777899999999999998875
No 70
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=96.10 E-value=0.027 Score=50.77 Aligned_cols=107 Identities=17% Similarity=0.306 Sum_probs=70.6
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
++.+|.|.. .++||+|...+|. .+.|.||++.++.- |. . .+++..++
T Consensus 20 v~~vI~~~~--g~VLL~kR~~~~~-----------~g~W~lPGG~VE~G--Et---~---------------~~Aa~REl 66 (159)
T PRK15434 20 LDFIVENSR--GEFLLGKRTNRPA-----------QGYWFVPGGRVQKD--ET---L---------------EAAFERLT 66 (159)
T ss_pred EEEEEECCC--CEEEEEEccCCCC-----------CCcEECCceecCCC--CC---H---------------HHHHHHHH
Confidence 456777653 4899988764331 27899999998543 22 2 47899999
Q ss_pred HHHcCCeecc--Cceee-eeeeccCCCC-CC--CCeeeEEEEEeEccCC----cccccccccccCHHHHHH
Q 013637 86 LEQLGFGVRD--GGEWK-LWKCVEEPEF-GP--GLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 86 l~~~gl~l~~--~~~~~-~~~w~~~~~~-~~--~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (439)
.++.|+.+.. ..+.. +.+... ..| +. ...|-+.+|.+....+ ...|....+|++++++++
T Consensus 67 ~EEtGl~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~ 136 (159)
T PRK15434 67 MAELGLRLPITAGQFYGVWQHFYD-DNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLA 136 (159)
T ss_pred HHHHCCccccccceEEEEEEeecc-cccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhh
Confidence 9999998643 23222 222222 211 11 3356777888888776 235788999999999976
No 71
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.97 E-value=0.038 Score=47.27 Aligned_cols=106 Identities=24% Similarity=0.357 Sum_probs=72.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+++|.|+. .++||+|...+| .+..|++|++..+. +| +. .+++..++
T Consensus 5 v~~ii~~~~--~~iLl~~r~~~~-----------~~~~w~~PGG~ve~--gE---t~---------------~~Aa~REl 51 (129)
T cd04678 5 VGVFVLNPK--GKVLLGKRKGSH-----------GAGTWALPGGHLEF--GE---SF---------------EECAAREV 51 (129)
T ss_pred EEEEEECCC--CeEEEEeccCCC-----------CCCeEECCcccccC--CC---CH---------------HHHHHHHH
Confidence 466777775 378999876542 36789999977642 22 22 47788999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCCc-------ccccccccccCHHHHHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQSCINC 147 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~-------~~e~~~~~W~~~~~al~~ 147 (439)
.++.|+.+............. . .....+-+.||.+....+. .+|.....|+++.+..+.
T Consensus 52 ~EE~Gl~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 52 LEETGLHIENVQFLTVTNDVF-E--EEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred HHHhCCcccceEEEEEEeEEe-C--CCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 999999877654433333322 2 3466889999999988762 235567799999987654
No 72
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=95.89 E-value=0.035 Score=48.88 Aligned_cols=104 Identities=17% Similarity=0.302 Sum_probs=66.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+.+|-|+. .++||+|+... .+.|++|++.++. +|. . .+++..++
T Consensus 10 v~~vi~~~~--~~vLl~~r~~~-------------~~~W~lPgG~ve~--gEs---~---------------~~aa~REl 54 (148)
T PRK09438 10 VLVVIYTPD--LGVLMLQRADD-------------PDFWQSVTGSLEE--GET---P---------------AQTAIREV 54 (148)
T ss_pred EEEEEEeCC--CeEEEEEecCC-------------CCcEeCCcccCCC--CCC---H---------------HHHHHHHH
Confidence 344555543 37999988642 2479999998764 333 2 47899999
Q ss_pred HHHcCCeeccCceeeeeeecc--------------CCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHHHHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVE--------------EPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCL 148 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~--------------~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~~~ 148 (439)
.++-|+......+. +..|.. ++ +. ...-..+|.+....+ +.+|.....|++++++.+..
T Consensus 55 ~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 55 KEETGIDVLAEQLT-LIDCQRSIEYEIFPHWRHRYAP--GV-TRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALT 130 (148)
T ss_pred HHHhCcCcccccee-ecccccccccccchhhhhcccc--cc-CCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHh
Confidence 99999988433222 222211 11 11 122345666776554 33699999999999998874
No 73
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=95.88 E-value=0.044 Score=47.16 Aligned_cols=106 Identities=23% Similarity=0.342 Sum_probs=74.0
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.|++|.+ +.++||+|+..++ ...|.+|++.+.. +|. . .+++..++
T Consensus 3 v~~ii~~---~~~vLlv~r~~~~------------~~~w~~PgG~ve~--gEs---~---------------~~aa~REl 47 (134)
T cd03675 3 VAAVVER---DGRFLLVEEETDG------------GLVFNQPAGHLEP--GES---L---------------IEAAVRET 47 (134)
T ss_pred EEEEEEE---CCEEEEEEEccCC------------CceEECCCccCCC--CCC---H---------------HHHHHHHH
Confidence 3445442 3489999987652 3579999999865 332 2 47899999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~~~ 149 (439)
.++.|+.+....+.....+..+. ....+...+|++.+..+ .+.|.....|++++++.+...
T Consensus 48 ~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 48 LEETGWHVEPTALLGIYQWTAPD---SDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred HHHHCcccccceEEEEEEeecCC---CCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhh
Confidence 99999998776655544443322 23466777788887765 234677899999999888775
No 74
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.80 E-value=0.038 Score=47.11 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=69.8
Q ss_pred ceeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHH
Q 013637 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (439)
+|..+||-+ ++ ++||+|+.. ...|.||++.++. +|. . .+++..
T Consensus 2 ~~v~~vi~~--~~-~vLl~~~~~--------------~~~w~lPgG~ve~--gEs---~---------------~~aa~R 44 (126)
T cd04688 2 VRAAAIIIH--NG-KLLVQKNPD--------------ETFYRPPGGGIEF--GES---S---------------EEALIR 44 (126)
T ss_pred eEEEEEEEE--CC-EEEEEEeCC--------------CCeEECCCccccC--CCC---H---------------HHHHHH
Confidence 455556552 23 899998653 4689999988874 333 1 478999
Q ss_pred HHHHHcCCeeccCceee-eeeeccCCCCCCCCeeeEEEEEeEccCCc-----------ccccccccccCHHHHH
Q 013637 84 QILEQLGFGVRDGGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDGN-----------QILQEGCKWMSTQSCI 145 (439)
Q Consensus 84 ~~l~~~gl~l~~~~~~~-~~~w~~~~~~~~~~~~dT~f~~a~~p~~~-----------~~e~~~~~W~~~~~al 145 (439)
++.++.|+......+.. +.+..+.. +..+..-..||.+.++.+. +.|.....|+++++..
T Consensus 45 E~~EEtGl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 116 (126)
T cd04688 45 EFKEELGLKIEITRLLGVVENIFTYN--GKPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELK 116 (126)
T ss_pred HHHHHhCCceecceeeEEEEEeeccC--CcccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcc
Confidence 99999999876655432 33333333 3344555788999988763 2477889999988766
No 75
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.78 E-value=0.047 Score=47.06 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=63.6
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+.++||+|++.. + ...|.+|++.++.-+ . . .+++..++.++.|++...
T Consensus 13 ~~~vLl~~r~~~--~----------~g~w~~PgG~ve~gE--s---~---------------~~aa~RE~~EEtGl~~~~ 60 (131)
T cd04695 13 ETKVLLLKRVKT--L----------GGFWCHVAGGVEAGE--T---A---------------WQAALRELKEETGISLPE 60 (131)
T ss_pred CCEEEEEEecCC--C----------CCcEECCcccccCCC--C---H---------------HHHHHHHHHHHhCCCccc
Confidence 458999998754 1 245999988876432 2 1 488999999999998754
Q ss_pred Cceee-eeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHHHH
Q 013637 96 GGEWK-LWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCL 148 (439)
Q Consensus 96 ~~~~~-~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~~~ 148 (439)
-.... +-+..+.. ..+.+...+|++....+ .++|.....|++.+++++..
T Consensus 61 ~~~~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 61 LYNADYLEQFYEAN---DNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELA 115 (131)
T ss_pred cccccceeeEeecC---CceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhc
Confidence 32211 11222222 12334455677776544 33688999999999998764
No 76
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.74 E-value=0.044 Score=46.05 Aligned_cols=100 Identities=21% Similarity=0.377 Sum_probs=65.7
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||+|+...| .+..|.+|++.++.-+ +. .+++..++.++.|+.....
T Consensus 11 ~~vLl~~r~~~~-----------~~~~w~~PgG~ie~gE-----~~---------------~~aa~RE~~EEtGl~~~~~ 59 (122)
T cd04673 11 GRVLLVRRANPP-----------DAGLWSFPGGKVELGE-----TL---------------EQAALRELLEETGLEAEVG 59 (122)
T ss_pred CEEEEEEEcCCC-----------CCCeEECCCcccCCCC-----CH---------------HHHHHHHHHHhhCcEeeec
Confidence 389999997532 2456999998887422 22 4789999999999998766
Q ss_pred ceeeeeeeccCCCCC-CCCeeeEEEEEeEccCC---cccccccccccCHHHHHHH
Q 013637 97 GEWKLWKCVEEPEFG-PGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~-~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~~ 147 (439)
.......+..+.-.+ ....+-...|.+....+ +..|.....|++++++.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 60 RLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEPVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred eeEEEEEEeeccCCCccceEEEEEEEEEEeCCCcccCCcccceeEEECHHHHhhC
Confidence 655555544422001 12233334456666555 3367788999999998764
No 77
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.73 E-value=0.071 Score=45.53 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=70.8
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCC-ccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
+++-|+. .+.||.|++.... .-...|++| ++.++. +|. . +++..++.
T Consensus 5 v~~~~~~--g~vLl~~R~~~~~---------~~pg~w~~p~GG~ve~--gE~-----------------~--~aa~REl~ 52 (127)
T cd04693 5 VCIFNSK--GELLLQKRSPNKD---------GWPGMWDLSVGGHVQA--GET-----------------S--TAAEREVK 52 (127)
T ss_pred EEEEeCC--CeEEEEEccCCCC---------CCCCcccccCCCcCCC--CCC-----------------H--HHHHHHHH
Confidence 3444543 3788877664321 113479998 565553 333 2 67899999
Q ss_pred HHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHHHHHhcC
Q 013637 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
++.|+.+....+..+.++.-+. +..-+..+|.+....+ +.+|...+.|++++++.+++.+.+
T Consensus 53 EEtGl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 118 (127)
T cd04693 53 EELGLELDFSELRPLFRYFFEA----EGFDDYYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGHGE 118 (127)
T ss_pred HHhCCCcChhhcEEEEEEEeec----CCeEEEEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhcCC
Confidence 9999998877666555554333 1222444555554433 446888999999999999998776
No 78
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=95.65 E-value=0.043 Score=45.37 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=70.1
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
++++.|.. .++||+|++.. ....|++|++.++. ++. . ...+..++.
T Consensus 4 ~~i~~~~~--~~ill~kr~~~------------~~~~~~~p~G~~~~--~e~---~---------------~~~a~RE~~ 49 (123)
T cd02883 4 GAVILDED--GRVLLVRRADS------------PGGLWELPGGGVEP--GET---L---------------EEAAIREVR 49 (123)
T ss_pred EEEEECCC--CCEEEEEEcCC------------CCCeEeCCcccccC--CCC---H---------------HHHHHHHHH
Confidence 45566554 48999998876 35789999987664 222 1 367899999
Q ss_pred HHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCCcc-----cccccccccCHHHHHH
Q 013637 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGNQ-----ILQEGCKWMSTQSCIN 146 (439)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~~-----~e~~~~~W~~~~~al~ 146 (439)
++.|+..........-....+. ..+..-..+|.+..+.++. .|.....|+++.++.+
T Consensus 50 EE~Gl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 50 EETGLDVDVLRLLGVYEVESPD---EGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred HhhCccceeeeEEEEEEeeccC---CCceEEEEEEEEEeCCCCcCCCCCCccceEEEEcHHHCcc
Confidence 9999987633222222222211 3567777888888877633 6777889999998876
No 79
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=95.63 E-value=0.062 Score=49.95 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=77.5
Q ss_pred hhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHH
Q 013637 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (439)
++-++. +.+++|+||-+||-+.- ...+.-+|-+|++.+.. ++. .+++..++.++
T Consensus 51 l~~~~~-~~~vvLvrQyR~~v~~~----~~~~~~~lElPAG~vd~--~~p-------------------~~aA~REL~EE 104 (191)
T PRK15009 51 LLYNAK-KKTVVLIRQFRVATWVN----GNESGQLIETCAGLLDN--DEP-------------------EVCIRKEAIEE 104 (191)
T ss_pred EEEECC-CCEEEEEEccccccccc----CCCCceEEEEeccccCC--CCH-------------------HHHHHHHHHHh
Confidence 334444 44999999999996421 23456788899888863 222 47899999999
Q ss_pred cCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEc----c----CCcccccccccccCHHHHHHHHHhcC
Q 013637 89 LGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL----L----DGNQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 89 ~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~----p----~~~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
-|+.. +.+.+.....+-+ |--- =-+++|+|.. . .++++|.....|++.+++++++.+++
T Consensus 105 TGy~a--~~~~~l~~~~~sp--G~s~-e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~ 171 (191)
T PRK15009 105 TGYEV--GEVRKLFELYMSP--GGVT-ELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGE 171 (191)
T ss_pred hCCcc--ceEEEeeEEEcCC--cccC-cEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCC
Confidence 99976 4455555555555 3221 2256677763 1 12667888999999999999998875
No 80
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.61 E-value=0.062 Score=45.58 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=67.0
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.+.||+|+...|+-. -...|++|++.++. +|. . .+++..++.++.|+.+...
T Consensus 12 g~vLl~~r~~~~~~~--------~~g~w~~PgG~ve~--gE~---~---------------~~aa~RE~~EE~Gl~~~~~ 63 (122)
T cd04682 12 GRLLLQLRDDKPGIP--------YPGHWDLPGGHREG--GET---P---------------LECVLRELLEEIGLTLPES 63 (122)
T ss_pred CEEEEEEccCCCCCC--------CCCcEeCCCccccC--CCC---H---------------HHHHHHHHHHHhCCccccc
Confidence 489999998877622 23589999998874 332 2 4779999999999987643
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHHHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLA 149 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~~~ 149 (439)
.+. +.+-.... ...-...+|++.+..+ +..|...+.|+++++..+...
T Consensus 64 ~~~-~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~ 116 (122)
T cd04682 64 RIP-WFRVYPSA----SPPGTEHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred ccc-eeEecccC----CCCceEEEEEEEEecCCCccccCchhheeecccHHHHhhccc
Confidence 332 22222211 2233456777777655 356888999999999876533
No 81
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.59 E-value=0.072 Score=47.08 Aligned_cols=116 Identities=15% Similarity=0.179 Sum_probs=70.6
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
.+++|+.|+. .+.||+|++.-++. -+..|++|.+.+.. +| +. .+++..+
T Consensus 3 ~v~viv~~~~--~~vLl~rr~~~~~~---------~~g~w~~PgG~v~~--~E---~~---------------~~aa~RE 51 (143)
T cd04694 3 GVAVLLQSSD--QKLLLTRRASSLRI---------FPNVWVPPGGHVEL--GE---NL---------------LEAGLRE 51 (143)
T ss_pred EEEEEEEcCC--CEEEEEEECCCCCC---------CCCeEECcccccCC--CC---CH---------------HHHHHHH
Confidence 4677878764 38999999864321 14679999988764 22 22 3778999
Q ss_pred HHHHcCCeeccCc--eeeeeee---ccCCC-CCCC--CeeeEEEEEeEccCC---------cccccccccccCHHHHHHH
Q 013637 85 ILEQLGFGVRDGG--EWKLWKC---VEEPE-FGPG--LTIHTVYIMGKLLDG---------NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 85 ~l~~~gl~l~~~~--~~~~~~w---~~~~~-~~~~--~~~dT~f~~a~~p~~---------~~~e~~~~~W~~~~~al~~ 147 (439)
+.++.|+.+.... ...+..| .+... .+.. ....+.||+...+.+ +..|....+|+++++|+++
T Consensus 52 ~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~ 131 (143)
T cd04694 52 LNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143)
T ss_pred HHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence 9999999887541 2233332 22110 0111 122333333222111 2368889999999999998
Q ss_pred HHhc
Q 013637 148 LAEV 151 (439)
Q Consensus 148 ~~~~ 151 (439)
+...
T Consensus 132 ~~~~ 135 (143)
T cd04694 132 VSAE 135 (143)
T ss_pred HHhh
Confidence 7754
No 82
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=95.58 E-value=0.06 Score=50.49 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=75.3
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.+++|+||-++|-.... .+.-+|-+|++.++. +|. . .+++..++.++-|+...
T Consensus 62 ~~vlLvrQyR~~~~~~~-----~~~~~lE~PAG~vd~--gE~---p---------------~~aA~REL~EETGy~a~-- 114 (202)
T PRK10729 62 DEVVLIEQIRIAAYDTS-----ETPWLLEMVAGMIEE--GES---V---------------EDVARREAIEEAGLIVG-- 114 (202)
T ss_pred CEEEEEEeeecccccCC-----CCCeEEEccceEcCC--CCC---H---------------HHHHHHHHHHHhCceee--
Confidence 49999999999974321 223569999999973 433 2 47899999999999853
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEc--c---C--C--cccccccccccCHHHHHHHHHhcC
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKL--L---D--G--NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~--p---~--~--~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
.+.++....+.+ +- ...-+++|+|.. . . + |++|.....|++.+++++++.+++
T Consensus 115 ~~~~l~~~~~sp--g~-~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~ 176 (202)
T PRK10729 115 RTKPVLSYLASP--GG-TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK 176 (202)
T ss_pred EEEEEEEEEcCC--Cc-CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCC
Confidence 344444444434 22 355678888873 1 1 1 557888899999999999998875
No 83
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.53 E-value=0.055 Score=46.01 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=64.0
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.+.||+||.. ...|.+|++.+.. +|. . ..++..++.++.|+.+...
T Consensus 13 ~~vLL~~~~~--------------~~~w~~PGG~ve~--gEs---~---------------~~aa~REl~EEtG~~~~~~ 58 (123)
T cd04672 13 GKILLVREKS--------------DGLWSLPGGWADV--GLS---P---------------AENVVKEVKEETGLDVKVR 58 (123)
T ss_pred CEEEEEEEcC--------------CCcEeCCccccCC--CCC---H---------------HHHHHHHHHHHhCCeeeEe
Confidence 4899999965 2579999988853 222 2 4789999999999998776
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~a 144 (439)
.+..+...+.....+.+..+=..||++....+ ...|....+|+++++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el 109 (123)
T cd04672 59 KLAAVDDRNKHHPPPQPYQVYKLFFLCEILGGEFKPNIETSEVGFFALDDL 109 (123)
T ss_pred EEEEEeccccccCCCCceEEEEEEEEEEecCCcccCCCceeeeEEECHHHC
Confidence 66655544432210122233345778887655 2368888999999875
No 84
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=95.50 E-value=0.045 Score=52.34 Aligned_cols=102 Identities=20% Similarity=0.219 Sum_probs=61.8
Q ss_pred HHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE--CCeEEEEEeCCC
Q 013637 250 VVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV--GGQRLTVVFSPG 327 (439)
Q Consensus 250 ~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l--Gg~~l~vi~tpG 327 (439)
.+..+.+++.++++|.|.||...-....-..-++.++.-+..+......+-......+..+++.++ ++.++.+..+|.
T Consensus 126 ~~~~~p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPa 205 (343)
T KOG3798|consen 126 KLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPA 205 (343)
T ss_pred hhccCCCCceeccccccccccchHHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcch
Confidence 344566777999999999998654443322224455554444433333322333455566655444 677888888875
Q ss_pred -CCCC------------CEEEEECCccEEEEcccccc
Q 013637 328 -HTDG------------HVALLHASTNSLIVGDHCVG 351 (439)
Q Consensus 328 -Ht~g------------~~~l~~~~~~iLftGD~l~~ 351 (439)
|+-+ +.++.-+..+.+|.||+-+.
T Consensus 206 qHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc 242 (343)
T KOG3798|consen 206 QHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGDTGYC 242 (343)
T ss_pred hhhcccccccCCcceeeeeEEecCCceEEecCCCCcc
Confidence 6532 34555567789999998543
No 85
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=95.46 E-value=0.079 Score=48.80 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=69.7
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+.++||+||.+++. ++..|.||++.++. +|. . .+++..++.++-|+..
T Consensus 58 ~~~vlLvrq~r~~~----------~~~~~elPaG~ve~--gE~---~---------------~~aA~REl~EEtG~~~-- 105 (185)
T PRK11762 58 DDTLLLIREYAAGT----------ERYELGFPKGLIDP--GET---P---------------LEAANRELKEEVGFGA-- 105 (185)
T ss_pred CCEEEEEEeecCCC----------CCcEEEccceeCCC--CCC---H---------------HHHHHHHHHHHHCCCC--
Confidence 45899999976653 46679999999884 332 1 4789999999999975
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHHHHhcC
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
+.+..+......+ +-. .-...+|+|.-..+ ++.|.....|++..++.+++...+
T Consensus 106 ~~l~~l~~~~~~~--~~~-~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~g~ 164 (185)
T PRK11762 106 RQLTFLKELSLAP--SYF-SSKMNIVLAEDLYPERLEGDEPEPLEVVRWPLADLDELLARPD 164 (185)
T ss_pred cceEEEEEEecCC--Ccc-CcEEEEEEEEccccccCCCCCCceeEEEEEcHHHHHHHHHcCC
Confidence 4555554433323 211 12334555553222 557778899999999999988775
No 86
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.44 E-value=0.058 Score=45.25 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=65.1
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
..++|.|+. + ++||+|++.++ .|.+|++.++. +|. . .+++..++
T Consensus 3 ~~~~i~~~~-~-~vLL~~r~~~~--------------~w~~PgG~ve~--gEt---~---------------~~aa~REl 46 (120)
T cd04680 3 ARAVVTDAD-G-RVLLVRHTYGP--------------GWYLPGGGLER--GET---F---------------AEAARREL 46 (120)
T ss_pred eEEEEECCC-C-eEEEEEECCCC--------------cEeCCCCcCCC--CCC---H---------------HHHHHHHH
Confidence 345666764 3 89999986443 79999987653 322 2 47899999
Q ss_pred HHHcCCeec-cCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHH
Q 013637 86 LEQLGFGVR-DGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 86 l~~~gl~l~-~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (439)
.++.|+... ... .+..+.... ..... ...+|.+....+ +..|.....|+++.+.-+
T Consensus 47 ~EEtG~~~~~~~~--~~~~~~~~~--~~~~~-~~~~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~ 107 (120)
T cd04680 47 LEELGIRLAVVAE--LLGVYYHSA--SGSWD-HVIVFRARADTQPVIRPSHEISEARFFPPDALPE 107 (120)
T ss_pred HHHHCCccccccc--eEEEEecCC--CCCce-EEEEEEecccCCCccCCcccEEEEEEECHHHCcc
Confidence 999999886 333 333333222 22333 445666666554 346888999999988754
No 87
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=95.40 E-value=0.036 Score=49.66 Aligned_cols=109 Identities=12% Similarity=0.198 Sum_probs=67.6
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
+++|-|+. .++||+||... ...|.+|++-+.. +|. . .+++..++.
T Consensus 12 ~~~i~~~~--g~vLL~~r~~~-------------~~~w~~P~G~~~~--gE~---~---------------~~aa~REl~ 56 (156)
T PRK00714 12 GIILLNRQ--GQVFWGRRIGQ-------------GHSWQFPQGGIDP--GET---P---------------EQAMYRELY 56 (156)
T ss_pred EEEEEecC--CEEEEEEEcCC-------------CCeEECCcccCCC--CcC---H---------------HHHHHHHHH
Confidence 35566654 38999999742 2469999988764 222 2 478999999
Q ss_pred HHcCCeeccC-ceeeeeeeccCC---CC-C-CCCee---eEEEEEeEccCC---------cccccccccccCHHHHHHHH
Q 013637 87 EQLGFGVRDG-GEWKLWKCVEEP---EF-G-PGLTI---HTVYIMGKLLDG---------NQILQEGCKWMSTQSCINCL 148 (439)
Q Consensus 87 ~~~gl~l~~~-~~~~~~~w~~~~---~~-~-~~~~~---dT~f~~a~~p~~---------~~~e~~~~~W~~~~~al~~~ 148 (439)
++-|+....- .+..+..|++-. .. . ....| ...||++++..+ +..|....+|++..++.+.+
T Consensus 57 EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 57 EEVGLRPEDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred HHhCCCccceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 9999986532 233332333211 00 0 01112 456788777432 22488899999999999876
Q ss_pred Hh
Q 013637 149 AE 150 (439)
Q Consensus 149 ~~ 150 (439)
..
T Consensus 137 ~~ 138 (156)
T PRK00714 137 VP 138 (156)
T ss_pred hh
Confidence 43
No 88
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.31 E-value=0.065 Score=45.79 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=65.7
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
-.+.+|.|+. + ++||+|+...|. ...|++|++.++.= |. . .+++..+
T Consensus 3 av~~~i~~~~-~-~vLL~~r~~~~~-----------~~~w~~PgG~ve~g--Es---~---------------~~aa~RE 49 (130)
T cd04681 3 AVGVLILNED-G-ELLVVRRAREPG-----------KGTLDLPGGFVDPG--ES---A---------------EEALIRE 49 (130)
T ss_pred eEEEEEEcCC-C-cEEEEEecCCCC-----------CCcEeCCceeecCC--CC---H---------------HHHHHHH
Confidence 3566777764 3 899998876431 45799999988532 22 2 4789999
Q ss_pred HHHHcCCeeccCceeeeeeeccCCCCCCCCeeeE--EEEEeEccCC----cccccccccccCHHHH
Q 013637 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHT--VYIMGKLLDG----NQILQEGCKWMSTQSC 144 (439)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT--~f~~a~~p~~----~~~e~~~~~W~~~~~a 144 (439)
+.++.|+....-....-..+..+. .+.++.+ .||++.++.+ +.+|.....|+++.+.
T Consensus 50 ~~EEtGl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el 112 (130)
T cd04681 50 IREETGLKVTELSYLFSLPNTYPY---GGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWVVPQDI 112 (130)
T ss_pred HHHHhCCcccceeEEEeecceeee---CCceeEEEEEEEEEEeCCCCCcCChHHhheeEEecHHHC
Confidence 999999987633222111111111 1222332 4788888765 4468888999998764
No 89
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.21 E-value=0.079 Score=45.76 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=60.6
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeec--
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR-- 94 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~-- 94 (439)
.++||+|+... ..|.||.+.+.. +|. . .+++..++.++.|+...
T Consensus 11 ~~vLLv~~~~~--------------~~w~lPgG~ve~--gEt---~---------------~~aa~REl~EEtGl~~~~~ 56 (131)
T cd04686 11 DKILLLYTKRY--------------GDYKFPGGGVEK--GED---H---------------IEGLIRELQEETGATNIRV 56 (131)
T ss_pred CEEEEEEEcCC--------------CcEECccccCCC--CCC---H---------------HHHHHHHHHHHHCCccccc
Confidence 48999998531 259999999875 332 2 47899999999999863
Q ss_pred cCceeeeeeecc---CCCCCCCCeeeEEEEEeEccCCc------cccc---ccccccCHHHHHHH
Q 013637 95 DGGEWKLWKCVE---EPEFGPGLTIHTVYIMGKLLDGN------QILQ---EGCKWMSTQSCINC 147 (439)
Q Consensus 95 ~~~~~~~~~w~~---~~~~~~~~~~dT~f~~a~~p~~~------~~e~---~~~~W~~~~~al~~ 147 (439)
...+..+.++.. +. +...+.-..||++.+..+. ..|. ..+.|++++++++.
T Consensus 57 ~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 57 IEKFGTYTERRPWRKPD--ADIFHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred ceEEEEEEeeccccCCC--CceeEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 223444433221 21 1112233568888886651 1222 25899999999985
No 90
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=95.12 E-value=0.081 Score=46.62 Aligned_cols=107 Identities=14% Similarity=0.254 Sum_probs=67.7
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
+++|-|.. .++||+|+..-+ ..|++|++.+.. +|. . .++++.++-
T Consensus 7 ~~ii~~~~--~~vLL~~r~~~~-------------~~W~~PgG~~e~--gE~---~---------------~~aA~REv~ 51 (147)
T cd03671 7 GVVLFNED--GKVFVGRRIDTP-------------GAWQFPQGGIDE--GED---P---------------EQAALRELE 51 (147)
T ss_pred EEEEEeCC--CEEEEEEEcCCC-------------CCEECCcCCCCC--CcC---H---------------HHHHHHHHH
Confidence 34455542 499999998765 569999988754 222 1 588999999
Q ss_pred HHcCCeeccCce-eeeeeecc---CCCCCCCCee-------eEEEEEeEccC--C----c---ccccccccccCHHHHHH
Q 013637 87 EQLGFGVRDGGE-WKLWKCVE---EPEFGPGLTI-------HTVYIMGKLLD--G----N---QILQEGCKWMSTQSCIN 146 (439)
Q Consensus 87 ~~~gl~l~~~~~-~~~~~w~~---~~~~~~~~~~-------dT~f~~a~~p~--~----~---~~e~~~~~W~~~~~al~ 146 (439)
++-|+.+....+ ..+.-|++ +.. ...+.+ ...+|++.+.. + + +.|.....|++++++.+
T Consensus 52 EEtGl~~~~~~~l~~~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~ 130 (147)
T cd03671 52 EETGLDPDSVEIIAEIPDWLRYDLPPE-LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPD 130 (147)
T ss_pred HHHCCCcCceEEEEEcCCeeEeeChhh-hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHH
Confidence 999998754333 22222222 221 111222 24566666654 2 1 45899999999999998
Q ss_pred HHH
Q 013637 147 CLA 149 (439)
Q Consensus 147 ~~~ 149 (439)
+..
T Consensus 131 ~~~ 133 (147)
T cd03671 131 LIV 133 (147)
T ss_pred hch
Confidence 754
No 91
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.92 E-value=0.083 Score=44.56 Aligned_cols=105 Identities=17% Similarity=0.272 Sum_probs=64.1
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
..+++|.|+. .++||+|++.- .+|+||++.+..- |. . .+++..+
T Consensus 4 ~v~~ii~~~~--~~vLl~~r~~~--------------~~w~lPgG~v~~~--E~---~---------------~~aa~RE 47 (129)
T cd04676 4 GVTAVVRDDE--GRVLLIRRSDN--------------GLWALPGGAVEPG--ES---P---------------ADTAVRE 47 (129)
T ss_pred eEEEEEECCC--CeEEEEEecCC--------------CcEECCeeccCCC--CC---H---------------HHHHHHH
Confidence 3456676654 38999987631 7899999866442 22 2 3678899
Q ss_pred HHHHcCCeeccCcee-eeeee---ccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHH
Q 013637 85 ILEQLGFGVRDGGEW-KLWKC---VEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 85 ~l~~~gl~l~~~~~~-~~~~w---~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~ 146 (439)
+-++.|+.+....+. .+..+ .+.+ .+....+=+.+|.+....+ +..|.....|++++++-+
T Consensus 48 l~EE~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~ 116 (129)
T cd04676 48 VREETGLDVEVTGLVGIYTGPVHVVTYP-NGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPP 116 (129)
T ss_pred HHHHhCceeEeeEEEEEeecccceeecC-CCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCcc
Confidence 999999988654432 12221 1211 0111233344556666665 446778889999887654
No 92
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=94.88 E-value=0.019 Score=62.16 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=30.8
Q ss_pred eEEEcCCCCCcHHHHHHHHH-H----cCCCccEEEeCCCchhhhcChHHHHH
Q 013637 232 ALIVDPGCRSEFHEELLKVV-A----SLPRKLIVFVTHHHRDHVDGLSIIQK 278 (439)
Q Consensus 232 ~vLID~G~~~~~~~~l~~~~-~----~~~~i~~VilTH~H~DHigG~~~l~~ 278 (439)
.||.|||.+.- .+..+.++ . .+.+.++|++||.|.||.-|+..+.+
T Consensus 473 ~IlLDCGEgTl-gql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~ 523 (746)
T KOG2121|consen 473 SILLDCGEGTL-GQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQ 523 (746)
T ss_pred cEEeecCCchH-HHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHH
Confidence 59999998853 11112222 1 12344589999999999999976654
No 93
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=94.79 E-value=0.14 Score=44.14 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=61.4
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||+|+... ...-|+||++.++. +|. . .+++..++.++.|+....
T Consensus 12 ~~vLL~~r~~~------------~~~~w~lPgG~ie~--gEt---~---------------~~aA~REl~EEtGl~~~~- 58 (131)
T cd03429 12 DRILLARQPRF------------PPGMYSLLAGFVEP--GES---L---------------EEAVRREVKEEVGIRVKN- 58 (131)
T ss_pred CEEEEEEecCC------------CCCcCcCCcccccC--CCC---H---------------HHHHhhhhhhccCceeee-
Confidence 59999998632 23579999998764 332 2 377999999999998743
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~~ 147 (439)
+. +..... .. . +..+ ..+|++....+ +..|.....|++.+++.++
T Consensus 59 -~~-~l~~~~-~~-~-~~~~-~~~f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 59 -IR-YVGSQP-WP-F-PSSL-MLGFTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred -eE-EEeecC-CC-C-CceE-EEEEEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 22 222221 11 1 2333 45677777655 3457788999999999887
No 94
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=94.62 E-value=0.2 Score=43.05 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=64.1
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
-.++||. . +.++||+|.+.... ...+|.||++.+..- |. . .+++..+
T Consensus 6 ~~~~ii~--~-~~~vLL~~R~~~~~----------~~g~w~~PgG~ve~g--E~---~---------------~~a~~RE 52 (135)
T PRK10546 6 VVAAIIE--R-DGKILLAQRPAHSD----------QAGLWEFAGGKVEPG--ES---Q---------------PQALIRE 52 (135)
T ss_pred EEEEEEe--c-CCEEEEEEccCCCC----------CCCcEECCcccCCCC--CC---H---------------HHHHHHH
Confidence 3455554 2 34899987643321 246899999876542 22 1 2567899
Q ss_pred HHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCCc--ccccccccccCHHHHHH
Q 013637 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCIN 146 (439)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~--~~e~~~~~W~~~~~al~ 146 (439)
+.++.|+.+....+..-.++.. ..+.++..+|.+..-.+. ..|.....|++++++.+
T Consensus 53 ~~EE~Gl~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 111 (135)
T PRK10546 53 LREELGIEATVGEYVASHQREV-----SGRRIHLHAWHVPDFHGELQAHEHQALVWCTPEEALR 111 (135)
T ss_pred HHHHHCCccccceeEEEEEEec-----CCcEEEEEEEEEEEecCcccccccceeEEcCHHHccc
Confidence 9999999987654332223322 234666777766554442 24567789999988754
No 95
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=94.56 E-value=0.18 Score=43.31 Aligned_cols=91 Identities=22% Similarity=0.384 Sum_probs=62.0
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+.++||+||...| ....|.||++.++. +|. . .+++..++.++.|++...
T Consensus 23 ~~~vLL~kr~~~~-----------~~g~w~lPgG~ve~--gE~---~---------------~~a~~REl~EEtGl~~~~ 71 (130)
T cd04511 23 EGKVLLCRRAIEP-----------RHGFWTLPAGFMEN--GET---T---------------EQGALRETWEEAGARVEI 71 (130)
T ss_pred CCEEEEEEecCCC-----------CCCeEECCcccccC--CCC---H---------------HHHHHHHHHHHhCCEEEe
Confidence 3599999996543 13579999999864 222 1 377999999999999865
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHH
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~a 144 (439)
..+...-.+ + ...--..||++++..+ .+.|.....|+++.+.
T Consensus 72 ~~~~~~~~~---~----~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~~~~~l 116 (130)
T cd04511 72 DGLYAVYSV---P----HISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEI 116 (130)
T ss_pred eeEEEEEec---C----CceEEEEEEEEEEcCCcccCCcchhceEEECHHHC
Confidence 543322211 1 1223456788888776 3467788899988765
No 96
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=94.52 E-value=0.19 Score=49.34 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCCc-HHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHHhCCCCEEEeCHhHHHHhcc-C--CCCCC-c
Q 013637 230 GEALIVDPGCRSE-FHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQKCNPDAILLAHENTMRRIGK-D--DWSLG-Y 304 (439)
Q Consensus 230 g~~vLID~G~~~~-~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~~~p~a~V~~~~~~~~~l~~-~--~~~~~-~ 304 (439)
|+.+|..|-.... ..+.+.++..+.+.++||+.-.....|.--+..++++||+|+||+.+.....-.+ . ..... .
T Consensus 30 G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~~lp~~~~g~~~~ 109 (285)
T PF14234_consen 30 GGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPLNLPLSWLGIPRD 109 (285)
T ss_pred CCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccccCchhhcCCccc
Confidence 4466666655443 3333333333348899999977655688899999999999999998764321000 0 00000 0
Q ss_pred eec-CCCceEEE-CCeEEEEEe---CCCCCCCCEEEEECCccEEEEcccccc
Q 013637 305 TSV-SGSEDICV-GGQRLTVVF---SPGHTDGHVALLHASTNSLIVGDHCVG 351 (439)
Q Consensus 305 ~~v-~~g~~l~l-Gg~~l~vi~---tpGHt~g~~~l~~~~~~iLftGD~l~~ 351 (439)
..+ .+...... ++....++. ...|.-..++++....+.|+..|+++.
T Consensus 110 ~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDll~n 161 (285)
T PF14234_consen 110 KTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDLLFN 161 (285)
T ss_pred cccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhchhh
Confidence 011 11111112 223334343 345778889999999999999999864
No 97
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=94.38 E-value=0.24 Score=44.62 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=68.6
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCC-ccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
+++|.|+. .++||.|++.+. ..-...|++| ++-+.. +|. . .++++.++
T Consensus 34 ~v~i~~~~--~~iLl~kR~~~~---------~~~Pg~w~~~~gG~ie~--GEt---~---------------~eaa~REl 82 (165)
T cd02885 34 SVFLFNSK--GRLLLQRRALSK---------YTFPGLWTNTCCSHPLP--GEG---V---------------KDAAQRRL 82 (165)
T ss_pred EEEEEcCC--CcEEEEeccCCC---------ccCCCcccccccCCCCC--CCC---H---------------HHHHHHHH
Confidence 46678765 379999876421 1235788886 454432 221 1 47899999
Q ss_pred HHHcCCeeccCcee-eeeeeccCCCCCCC--CeeeEEEEEeEccCC---cccccccccccCHHHHHHHHHhc
Q 013637 86 LEQLGFGVRDGGEW-KLWKCVEEPEFGPG--LTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEV 151 (439)
Q Consensus 86 l~~~gl~l~~~~~~-~~~~w~~~~~~~~~--~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~~~~~~ 151 (439)
.++.|+.+....+. .--++..+.. ... ..+. .+|.+.+..+ +..|.....|++++++.+.+.+.
T Consensus 83 ~EEtGl~~~~~~~~~~~~~~~~~~~-~~~~~~~i~-~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~ 152 (165)
T cd02885 83 REELGITGDLLELVLPRFRYRAPDD-GGLVEHEID-HVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA 152 (165)
T ss_pred HHHhCCCccchhhccceEEEEEEcC-CCceeeEEE-EEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC
Confidence 99999998755543 1112222110 111 1132 4555665444 44677889999999999998776
No 98
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=94.33 E-value=0.22 Score=42.29 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=61.1
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
+.+++|-+ +..+||+|+.. ...|.+|++.++.= ++. .+++..+
T Consensus 3 ~~~~vi~~---~~~vLlv~~~~--------------~~~~~lPGG~ve~g-----Et~---------------~~aa~RE 45 (125)
T cd04689 3 RARAIVRA---GNKVLLARVIG--------------QPHYFLPGGHVEPG-----ETA---------------ENALRRE 45 (125)
T ss_pred EEEEEEEe---CCEEEEEEecC--------------CCCEECCCCcCCCC-----CCH---------------HHHHHHH
Confidence 34455542 44899999741 23699999777532 222 4789999
Q ss_pred HHHHcCCeeccCceeee--eeeccCCCCCCCCeeeEEEEEeEccCC-------cccccccccccCHHH
Q 013637 85 ILEQLGFGVRDGGEWKL--WKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQS 143 (439)
Q Consensus 85 ~l~~~gl~l~~~~~~~~--~~w~~~~~~~~~~~~dT~f~~a~~p~~-------~~~e~~~~~W~~~~~ 143 (439)
+.++.|+.+....+..- ..|..+ +.....-+.||.+.++.+ ...|.....|++.++
T Consensus 46 l~EEtGl~~~~~~~l~~~~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~e 110 (125)
T cd04689 46 LQEELGVAVSDGRFLGAIENQWHEK---GVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSD 110 (125)
T ss_pred HHHHhCceeeccEEEEEEeeeeccC---CceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHH
Confidence 99999998875443221 123221 111122245788887754 234677899999988
No 99
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.21 E-value=0.22 Score=42.63 Aligned_cols=100 Identities=22% Similarity=0.355 Sum_probs=67.9
Q ss_pred ceeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHH
Q 013637 4 YNVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALN 83 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (439)
|=.|++|.|. +.+.||+|+.+.|. +..|.||++..+. +|. . .+++..
T Consensus 1 ~~~~~vv~~~--~~~vLl~~r~~~~~-----------~~~w~lPgG~ve~--gEt---~---------------~~aa~R 47 (123)
T cd04671 1 YIVAAVILNN--QGEVLLIQEAKRSC-----------RGKWYLPAGRMEP--GET---I---------------EEAVKR 47 (123)
T ss_pred CEEEEEEEcC--CCEEEEEEecCCCC-----------CCeEECceeecCC--CCC---H---------------HHHHHH
Confidence 3456677764 34899999975431 4569999988864 322 2 478999
Q ss_pred HHHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-------cccccccccccCHHHH
Q 013637 84 QILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSC 144 (439)
Q Consensus 84 ~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-------~~~e~~~~~W~~~~~a 144 (439)
++.++.|+++....+..+- .. ++.+-..+|.+....| ++.|....+|++.++.
T Consensus 48 El~EEtG~~~~~~~~~~~~----~~----~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el 107 (123)
T cd04671 48 EVKEETGLDCEPTTLLSVE----EQ----GGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDL 107 (123)
T ss_pred HHHHHHCCeeecceEEEEE----cc----CCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHC
Confidence 9999999999877654321 11 1335566777887665 2345568999998876
No 100
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.15 E-value=0.32 Score=42.55 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=68.3
Q ss_pred hcCCC-CCceeEEeecCCCCCCCcccccccccccCCCCC-ccccccccCccCCCcceecccccccccccchhhHHHHHHH
Q 013637 10 LKNPL-NDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILE 87 (439)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (439)
|.|.. +...+|+.|.++.-+ .-...|++| ++.++. +|. . .++++.++.+
T Consensus 9 v~~~~~~~~~vLl~~R~~~~~---------~~pg~W~~~~gG~ve~--gEt---~---------------~~aa~REl~E 59 (144)
T cd04692 9 IITKDEGKGYVLLQKRSANKK---------TYPGLWDISSAGHILA--GET---P---------------LEDGIRELEE 59 (144)
T ss_pred EEEccCCCCEEEEEecCCCCC---------CCCCccccccCcccCC--CCC---H---------------HHHHHHHHHH
Confidence 44443 235677766543211 124579994 777653 332 2 4789999999
Q ss_pred HcCCeeccCceeeeeee---cc-CCCCCCCCeeeEEEEEeEccC--C----cccccccccccCHHHHHHHHHhcCC
Q 013637 88 QLGFGVRDGGEWKLWKC---VE-EPEFGPGLTIHTVYIMGKLLD--G----NQILQEGCKWMSTQSCINCLAEVKP 153 (439)
Q Consensus 88 ~~gl~l~~~~~~~~~~w---~~-~~~~~~~~~~dT~f~~a~~p~--~----~~~e~~~~~W~~~~~al~~~~~~~~ 153 (439)
+.|+.+..+.+..+... .+ ... ...+.+ ..+|++.+.. + +..|.....|++.+++.+.+.+.+.
T Consensus 60 EtGl~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~ 133 (144)
T cd04692 60 ELGLDVSADDLIPLGTFKIEYDHIGK-LIDREF-HHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEEEDH 133 (144)
T ss_pred HhCCCCChHHeEEeeEEEEeccccCC-CccceE-EEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHcCCC
Confidence 99998866555443322 22 110 111223 3455666543 2 4468899999999999999977653
No 101
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=94.08 E-value=0.29 Score=41.38 Aligned_cols=105 Identities=17% Similarity=0.254 Sum_probs=63.8
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+++|.|.. .++||.|++.-++. ...+|++|++.+..- |. . .+++..++
T Consensus 4 v~~vv~~~~--~~iLl~kr~~~~~~---------~~g~w~~PgG~ve~g--Es---~---------------~~aa~RE~ 52 (129)
T cd04699 4 VAALIVKDV--GRILILKRSKDERT---------APGKWELPGGKVEEG--ET---F---------------EEALKREV 52 (129)
T ss_pred EEEEEECCC--CcEEEEEecCCCCC---------CCCcCcCCccCccCC--CC---H---------------HHHHHHHH
Confidence 455666532 48999988755432 345799999866442 22 2 36678999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSC 144 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~a 144 (439)
.++.|+.+....+.. ..+... +......-..+|.+....+ ...|.....|++++++
T Consensus 53 ~EE~Gl~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el 111 (129)
T cd04699 53 YEETGLTVTPFLRYP--STVTHE-DSGVYNVIYLVFVCEALSGAVKLSDEHEEYAWVTLEEL 111 (129)
T ss_pred HHhhCcEEEeeeeee--EEEEEc-CCCEEEEEEEEEEeeecCCcccCChhheEEEEecHHHh
Confidence 999999887655431 122222 1111233344556544333 3457788899999987
No 102
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.99 E-value=0.16 Score=43.12 Aligned_cols=97 Identities=21% Similarity=0.369 Sum_probs=62.3
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
|.++||-+. +.++||+|+..+. ...|.||++.++. +|. . .+++..+
T Consensus 2 ~~~~ii~~~--~~~vLL~~r~~~~------------~~~w~lPGG~ve~--gEs---~---------------~~a~~RE 47 (121)
T cd04669 2 RASIVIIND--QGEILLIRRIKPG------------KTYYVFPGGGIEE--GET---P---------------EEAAKRE 47 (121)
T ss_pred ceEEEEEeC--CCEEEEEEEecCC------------CCcEECCceeccC--CCC---H---------------HHHHHHH
Confidence 445566654 2489999975431 1479999999874 333 2 4778899
Q ss_pred HHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCCc-------------ccccccccccCHHHH
Q 013637 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------------QILQEGCKWMSTQSC 144 (439)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~-------------~~e~~~~~W~~~~~a 144 (439)
+.++.|+.+....+.....+ . ..+..||+++.-.|. +.+.....|++++++
T Consensus 48 l~EEtGl~~~~~~~~~~~~~---~------~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el 111 (121)
T cd04669 48 ALEELGLDVRVEEIFLIVNQ---N------GRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQL 111 (121)
T ss_pred HHHhhCeeEeeeeEEEEEee---C------CcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHc
Confidence 99999999866554432221 1 234678888776651 112335789998764
No 103
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.93 E-value=0.25 Score=42.03 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=63.9
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+++|-|+. .++||+|+..+ + +..|.+|++..+. +|. . .+++..++
T Consensus 5 ~~~~v~~~~--~~vLl~~r~~~--~----------~~~w~~PGG~ve~--gEt---~---------------~~aa~RE~ 50 (127)
T cd04670 5 VGGLVLNEK--NEVLVVQERNK--T----------PNGWKLPGGLVDP--GED---I---------------FDGAVREV 50 (127)
T ss_pred EEEEEEcCC--CeEEEEEccCC--C----------CCcEECCCccCCC--CCC---H---------------HHHHHHHH
Confidence 455666664 38999987553 1 2469999988753 222 2 47899999
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC------cccccccccccCHHHHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~------~~~e~~~~~W~~~~~al~ 146 (439)
.++.|+.+....+..+..|.. . . ....+ .||+..+... +..|.....|++.++.++
T Consensus 51 ~EE~Gl~~~~~~~~~~~~~~~-~--~-~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 51 LEETGIDTEFVSVVGFRHAHP-G--A-FGKSD-LYFICRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred HHHHCCCcceeEEEEEEecCC-C--C-cCcee-EEEEEEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 999999886554444333322 1 1 12233 4455555321 345777899999998854
No 104
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.65 E-value=0.19 Score=42.86 Aligned_cols=99 Identities=22% Similarity=0.250 Sum_probs=63.3
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||++.... ..|++|++.++. +|. . .++++.++.++.|+.+...
T Consensus 19 ~~vLL~~r~~~--------------~~w~~PgG~v~~--gEt---~---------------~~aa~REl~EE~Gi~~~~~ 64 (132)
T cd04677 19 GEVLLQKRSDT--------------GDWGLPGGAMEL--GES---L---------------EETARRELKEETGLEVEEL 64 (132)
T ss_pred CCEEEEEecCC--------------CcEECCeeecCC--CCC---H---------------HHHHHHHHHHHhCCeeeee
Confidence 48888776532 469999977753 222 1 4789999999999998775
Q ss_pred ceee-ee---eeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHHHHHh
Q 013637 97 GEWK-LW---KCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINCLAE 150 (439)
Q Consensus 97 ~~~~-~~---~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~~~~~ 150 (439)
.+.. +. .|..+.. +....+-+.||+.....+ +..|.....|+++.++.+.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 65 ELLGVYSGKEFYVKPNG-DDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred EEEEEecCCceeecCCC-CcEEEEEEEEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 5432 21 1222220 222345566777766544 4468889999999988766543
No 105
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=93.49 E-value=0.42 Score=39.71 Aligned_cols=93 Identities=15% Similarity=0.279 Sum_probs=62.6
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||+|++..+. ...+|+||++.+..- + +. .+.+..++.++.|+.+...
T Consensus 13 ~~~Ll~~r~~~~~----------~~g~w~~p~G~~~~~--e---~~---------------~~~a~Re~~EE~g~~~~~~ 62 (124)
T cd03425 13 GRILIAQRPAGKH----------LGGLWEFPGGKVEPG--E---TP---------------EQALVRELREELGIEVEVG 62 (124)
T ss_pred CEEEEEEeCCCCC----------CCCeEeCCCcccCCC--C---CH---------------HHHHHHHHHHhhCcEEecc
Confidence 4899998876542 356899999876431 1 11 3567789999999987654
Q ss_pred cee-eeeeeccCCCCCCCCeeeEEEEEeEccCCc--ccccccccccCHHHHH
Q 013637 97 GEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSCI 145 (439)
Q Consensus 97 ~~~-~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~--~~e~~~~~W~~~~~al 145 (439)
... .+.|..+ .......+|.+....+. ..|.....|+++++..
T Consensus 63 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~ 108 (124)
T cd03425 63 ELLATVEHDYP------DKRVTLHVFLVELWSGEPQLLEHQELRWVPPEELD 108 (124)
T ss_pred ceEEEEEeeCC------CCeEEEEEEEEeeeCCCcccccCceEEEeeHHHcc
Confidence 322 2233222 45777888888876663 2577889999988774
No 106
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=93.01 E-value=0.9 Score=38.71 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=64.9
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCC-ccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLP-AIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
.++||.|.++-+++ ....|++| ++.++. +|. . .+++..++.++.|+...
T Consensus 12 ~~iLl~~R~~~~~~---------~~g~w~~~~GG~ve~--gE~---~---------------~~aa~REl~EEtGl~~~- 61 (126)
T cd04697 12 GKLCVHKRTLTKDW---------CPGYWDIAFGGVVQA--GES---Y---------------LQNAQRELEEELGIDGV- 61 (126)
T ss_pred CeEEEEECCCCCCC---------CCCcccCcCCcccCC--CCC---H---------------HHHHHHHHHHHHCCCcc-
Confidence 38888765544322 24579995 566643 222 1 47899999999999875
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHHHHHHHhcC
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
.+.++..+.... ... ++.-.+|.+..... +..|..+..|++++++.+++....
T Consensus 62 -~l~~~~~~~~~~--~~~-~~~~~~f~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~ 117 (126)
T cd04697 62 -QLTPLGLFYYDT--DGN-RVWGKVFSCVYDGPLKLQEEEVEEITWLSINEILQFKEGEN 117 (126)
T ss_pred -ccEEeeEEEecC--CCc-eEEEEEEEEEECCCCCCCHhHhhheEEcCHHHHHHHhhcCc
Confidence 455555444433 222 33334555655322 446888999999999999877665
No 107
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=92.91 E-value=0.58 Score=40.66 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=59.9
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.+.||+|+.. ...|-||++.++. +|. . .+++..++.++-|+.+...
T Consensus 15 ~~vLLv~r~~--------------~~~w~lPgG~ve~--gE~---~---------------~~aa~REl~EEtGl~~~~~ 60 (138)
T cd03674 15 GKVLLTHHRK--------------LGSWLQPGGHIDP--DES---L---------------LEAALRELREETGIELLGL 60 (138)
T ss_pred CeEEEEEEcC--------------CCcEECCceecCC--CCC---H---------------HHHHHHHHHHHHCCCcccc
Confidence 5899999854 2579999988875 333 2 4789999999999986544
Q ss_pred ceee-----eeeeccCCC-CC-CCCe-eeEEEEEeEccCC-----cccccccccccCHHHHHH
Q 013637 97 GEWK-----LWKCVEEPE-FG-PGLT-IHTVYIMGKLLDG-----NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 97 ~~~~-----~~~w~~~~~-~~-~~~~-~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~ 146 (439)
.... ..++..... .+ +... ++.. |++..+.+ +..|...+.|++..++..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 122 (138)
T cd03674 61 RPLSVLVDLDVHPIDGHPKRGVPGHLHLDLR-FLAVAPADDVAPPKSDESDAVRWFPLDELAS 122 (138)
T ss_pred eeccccccceeEeecCCCCCCCCCcEEEEEE-EEEEccCccccCCCCCcccccEEEcHHHhhh
Confidence 3322 223322110 00 1112 3334 66666555 245888999999988764
No 108
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=92.81 E-value=0.45 Score=39.59 Aligned_cols=88 Identities=22% Similarity=0.393 Sum_probs=59.1
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+.++||+|+.. ..|.+|++.++. +|. . .+++..++.++.|+....
T Consensus 10 ~~~vLlv~r~~---------------~~w~~PgG~ve~--gE~---~---------------~~aa~REl~EEtGl~~~~ 54 (112)
T cd04667 10 GGRVLLVRKSG---------------SRWALPGGKIEP--GET---P---------------LQAARRELQEETGLQGLD 54 (112)
T ss_pred CCEEEEEEcCC---------------CcEeCCCCcCCC--CCC---H---------------HHHHHHHHHHHhCCcccc
Confidence 34899999851 579999977754 222 1 478999999999997642
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHHHHH
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~al~~ 147 (439)
+..+..+ . . ... ...+|++.++.+ ...|.....|+++.++.+.
T Consensus 55 --~~~~~~~-~-~----~~~-~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 101 (112)
T cd04667 55 --LLYLFHV-D-G----GST-RHHVFVASVPPSAQPKPSNEIADCRWLSLDALGDL 101 (112)
T ss_pred --eEEEEEE-e-C----CCE-EEEEEEEEcCCcCCCCCchheeEEEEecHHHhhhc
Confidence 3333322 1 1 122 346788888766 3357788999999988764
No 109
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=92.56 E-value=0.54 Score=40.89 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=57.6
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++||.|.+.+++.. ...|++|++.++. +|. . .+++..++.++.|+.+...
T Consensus 15 ~~vLl~~R~~~~~~~---------~g~W~lPgG~ve~--gEs---~---------------~~aa~REl~EEtGl~~~~~ 65 (141)
T PRK15472 15 GAYLLCKMADDRGVF---------PGQWALSGGGVEP--GER---I---------------EEALRREIREELGEQLLLT 65 (141)
T ss_pred CEEEEEEecccCCCC---------CCceeCCcccCCC--CCC---H---------------HHHHHHHHHHHHCCceeee
Confidence 489998865443211 2579999998753 333 2 4778999999999987655
Q ss_pred ceeeeeee-----cc-CCCCCCC-CeeeEEE-EEeEccCC---cccccccccccCHHHHHH
Q 013637 97 GEWKLWKC-----VE-EPEFGPG-LTIHTVY-IMGKLLDG---NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 97 ~~~~~~~w-----~~-~~~~~~~-~~~dT~f-~~a~~p~~---~~~e~~~~~W~~~~~al~ 146 (439)
.+.++.-. .. +. +.. ..|...+ |......+ ...|.....|+++++.-+
T Consensus 66 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 124 (141)
T PRK15472 66 EITPWTFRDDIRTKTYAD--GRKEEIYMIYLIFDCVSANRDVKINEEFQDYAWVKPEDLVH 124 (141)
T ss_pred eeccccccccceeEEecC--CCceeEEEEEEEEEeecCCCcccCChhhheEEEccHHHhcc
Confidence 54433111 00 11 111 1233322 22322222 235788999999987754
No 110
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=92.50 E-value=0.44 Score=48.34 Aligned_cols=99 Identities=16% Similarity=0.227 Sum_probs=66.4
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.+.||+|....|+ ...|.||++.++. +|. . .++++.++.++-|+++...
T Consensus 214 g~VLLvrR~~~p~-----------~g~W~lPGG~ve~--gEt---~---------------~~Aa~REl~EETGl~v~~~ 262 (340)
T PRK05379 214 GHVLLVRRRAEPG-----------KGLWALPGGFLEQ--DET---L---------------LDACLRELREETGLKLPEP 262 (340)
T ss_pred CEEEEEEecCCCC-----------CCeEECCcccCCC--CCC---H---------------HHHHHHHHHHHHCCccccc
Confidence 4899999865443 5789999998876 222 1 4789999999999987655
Q ss_pred ceee-e---eeeccCCCCCCCCeeeEEEEEeEccCC------cccccccccccCHHHHHHH
Q 013637 97 GEWK-L---WKCVEEPEFGPGLTIHTVYIMGKLLDG------NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 97 ~~~~-~---~~w~~~~~~~~~~~~dT~f~~a~~p~~------~~~e~~~~~W~~~~~al~~ 147 (439)
.+.. + .-+-.|. ..+..+.=|.+|.+.++.+ .+.|.....|++.+++.+.
T Consensus 263 ~l~~~~~~~~~f~~p~-r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 263 VLRGSIRDQQVFDHPG-RSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred ccceeeeeeEEEcCCC-CCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence 4321 1 1122222 1122355577888888765 2358899999999988653
No 111
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=92.34 E-value=0.9 Score=40.62 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=46.8
Q ss_pred hhHHHHHHHHcCCeeccCceeeee--eeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHHHHHHHhcC
Q 013637 79 ESALNQILEQLGFGVRDGGEWKLW--KCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 79 ~~~l~~~l~~~gl~l~~~~~~~~~--~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
++++.++.++.|+.+....+..+. ++.... ..+..+=..+|.+..+.. +..|.....|+++++..+++...+
T Consensus 71 eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~--~~g~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~~ 147 (158)
T TIGR02150 71 EAAIRRLREELGIPADDVPLTVLPRFSYRARD--AWGEHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPW 147 (158)
T ss_pred HHHHHHHHHHHCCCccccceEEcceEEEEEec--CCCcEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence 679999999999998765432222 333322 111223334556666543 345899999999999988888654
No 112
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=91.97 E-value=0.25 Score=47.88 Aligned_cols=91 Identities=27% Similarity=0.349 Sum_probs=53.7
Q ss_pred ccEEEeCCCchhhhcChHH----HHHhCCCCEEEeCHhHHHHhccCC-----CC---------CCceecCCCceEEECCe
Q 013637 257 KLIVFVTHHHRDHVDGLSI----IQKCNPDAILLAHENTMRRIGKDD-----WS---------LGYTSVSGSEDICVGGQ 318 (439)
Q Consensus 257 i~~VilTH~H~DHigG~~~----l~~~~p~a~V~~~~~~~~~l~~~~-----~~---------~~~~~v~~g~~l~lGg~ 318 (439)
|.--++||+|-||+.|+-. +.++. .-+||+.+.+.+.+++.- |+ .++..+++.+...++-.
T Consensus 113 I~~y~ITH~HLDHIsGlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~t 191 (356)
T COG5212 113 INSYFITHAHLDHISGLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTLT 191 (356)
T ss_pred hhheEeccccccchhceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeeee
Confidence 4567999999999999843 33332 447999998888876531 11 22344555555555433
Q ss_pred EEEEEeCC---CCCCC----CEEEEECCc----cEEEEccc
Q 013637 319 RLTVVFSP---GHTDG----HVALLHAST----NSLIVGDH 348 (439)
Q Consensus 319 ~l~vi~tp---GHt~g----~~~l~~~~~----~iLftGD~ 348 (439)
.+.+++-| |-..| +.++++.+. -+++.||.
T Consensus 192 ~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDv 232 (356)
T COG5212 192 RLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDV 232 (356)
T ss_pred eecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCC
Confidence 34444332 22222 244555433 38899996
No 113
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=91.28 E-value=1.3 Score=40.47 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=64.6
Q ss_pred hhhcCCCCCceeEEeecCCCCCCCcccccccccccCCC-CCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 8 LILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWD-LPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
++|.|+. .++||.|..++..+-. ..|+ +|++.+.+ +|. . .+++..++-
T Consensus 42 v~v~~~~--g~iLL~~R~~~~~~~p---------g~~~~~pGG~ve~--GEs---~---------------~eAA~REL~ 90 (180)
T PRK15393 42 IVVHDGM--GKILVQRRTETKDFLP---------GMLDATAGGVVQA--GEQ---L---------------LESARREAE 90 (180)
T ss_pred EEEECCC--CeEEEEEeCCCCCCCC---------CcccccCCCcCCC--CCC---H---------------HHHHHHHHH
Confidence 4455643 4899988766554432 2354 67887764 222 2 478999999
Q ss_pred HHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHHHHHHHhcC
Q 013637 87 EQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 87 ~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
++-|+.... +..+..+.... +..++...||.+..... +..|....+|++++++.+......
T Consensus 91 EEtGl~~~~--~~~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~ 154 (180)
T PRK15393 91 EELGIAGVP--FAEHGQFYFED---ENCRVWGALFSCVSHGPFALQEEEVSEVCWMTPEEITARCDEFT 154 (180)
T ss_pred HHHCCCCcc--ceeceeEEecC---CCceEEEEEEEEEeCCCCCCChHHeeEEEECCHHHHhhhhhhcC
Confidence 999997432 22222332222 22233233454444322 446889999999999998765443
No 114
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=91.28 E-value=1.3 Score=40.60 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHcCCeeccCc-eeeeeeeccCCCCCCCCeeeEEEEEeEccCC---cccccccccccCHHHHHHHHHhcCC
Q 013637 78 IESALNQILEQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---NQILQEGCKWMSTQSCINCLAEVKP 153 (439)
Q Consensus 78 ~~~~l~~~l~~~gl~l~~~~-~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---~~~e~~~~~W~~~~~al~~~~~~~~ 153 (439)
.+++..++.++.|+...... +..-..+.....-+.-...-..+|++..... +..|-....|++++++.+++.+.+.
T Consensus 79 ~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~~~ 158 (184)
T PRK03759 79 EDAVIRRCREELGVEITDLELVLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDATPW 158 (184)
T ss_pred HHHHHHHHHHHhCCCccccccccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhCCc
Confidence 47799999999999885322 1111122211100211122344677776533 4468889999999999999988754
Q ss_pred CCCcCCchhhhh
Q 013637 154 STDRVGPLVVIG 165 (439)
Q Consensus 154 ~~~~~~~~~~~~ 165 (439)
...|+.++-
T Consensus 159 ---~~~~~l~~~ 167 (184)
T PRK03759 159 ---AFSPWMVLQ 167 (184)
T ss_pred ---ccChHHHHH
Confidence 444544443
No 115
>PLN02325 nudix hydrolase
Probab=91.17 E-value=1 Score=39.65 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=60.2
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.+.||+|...+|. ...|.||++.++.- |. . .+++..++.++-|+.+...
T Consensus 20 ~~vLL~rr~~~~~-----------~g~W~lPGG~ve~g--Es---~---------------~~aa~REv~EEtGl~v~~~ 68 (144)
T PLN02325 20 NSVLLGRRRSSIG-----------DSTFALPGGHLEFG--ES---F---------------EECAAREVKEETGLEIEKI 68 (144)
T ss_pred CEEEEEEecCCCC-----------CCeEECCceeCCCC--CC---H---------------HHHHHHHHHHHHCCCCcce
Confidence 4899988876543 14699999877532 22 1 4789999999999988765
Q ss_pred ceeeeeee-ccCCCCCCCCeeeEEEEEeEccCCc-------ccccccccccCHHHH
Q 013637 97 GEWKLWKC-VEEPEFGPGLTIHTVYIMGKLLDGN-------QILQEGCKWMSTQSC 144 (439)
Q Consensus 97 ~~~~~~~w-~~~~~~~~~~~~dT~f~~a~~p~~~-------~~e~~~~~W~~~~~a 144 (439)
.+...... .... .....+-+.||.+.+.++. ..|.....|++.++.
T Consensus 69 ~~l~~~~~~~~~~--~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~L 122 (144)
T PLN02325 69 ELLTVTNNVFLEE--PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNL 122 (144)
T ss_pred EEEEEecceeecC--CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHC
Confidence 54433222 2111 2234566778888765441 123466799987653
No 116
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=90.56 E-value=1.7 Score=36.44 Aligned_cols=101 Identities=17% Similarity=0.302 Sum_probs=58.2
Q ss_pred ehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHH
Q 013637 7 ALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQIL 86 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (439)
+++|.|. +.++||.|-+..+.+ +.+|++|++.++.- |. . .+++..++.
T Consensus 8 ~~ii~~~--~~~vll~rR~~~~~~----------~g~w~~PgG~~~~g--E~---~---------------~~a~~Re~~ 55 (129)
T PRK10776 8 VGIIRNP--NNEIFITRRAADAHM----------AGKWEFPGGKIEAG--ET---P---------------EQALIRELQ 55 (129)
T ss_pred EEEEECC--CCEEEEEEecCCCCC----------CCeEECCceecCCC--CC---H---------------HHHHHHHHH
Confidence 3455543 348888885432211 46899998755431 11 1 245668999
Q ss_pred HHcCCeeccCc-eeeeeeeccCCCCCCCCeeeEEEEEeEccCC--cccccccccccCHHHHH
Q 013637 87 EQLGFGVRDGG-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQSCI 145 (439)
Q Consensus 87 ~~~gl~l~~~~-~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~--~~~e~~~~~W~~~~~al 145 (439)
++.|+.+.... +..+ +++.+ .+...-.||.+...++ ...|.....|+++++.-
T Consensus 56 EE~gl~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~ 111 (129)
T PRK10776 56 EEVGITVQHATLFEKL-EYEFP-----DRHITLWFWLVESWEGEPWGKEGQPGRWVSQVALN 111 (129)
T ss_pred HHHCCceecceEEEEE-EeeCC-----CcEEEEEEEEEEEECCccCCccCCccEEecHHHCc
Confidence 99998765432 2222 22222 2456666777765444 22366778999987754
No 117
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=90.17 E-value=0.64 Score=35.16 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=34.8
Q ss_pred ceEEEec-CCeEEE-cCCCCCcHHHHHHHHHHcCCCccEEEeCCCc-hhhhcC
Q 013637 223 NHRFVAQ-GEALIV-DPGCRSEFHEELLKVVASLPRKLIVFVTHHH-RDHVDG 272 (439)
Q Consensus 223 ~s~~vi~-g~~vLI-D~G~~~~~~~~l~~~~~~~~~i~~VilTH~H-~DHigG 272 (439)
.+.++.. .+..|+ ++|.+.+ +.+.+...++.++..||+|+.. ++++||
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQ--R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQ--RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHH--HHHHHcCCCccccceEEECCCCcccccCC
Confidence 3444433 457899 9998865 4555544466677899999999 999997
No 118
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.99 E-value=1.9 Score=36.35 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=55.8
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
.++|+.|.+..+. ...+|++|++..+. ++. . .+....++.++.|+.+...
T Consensus 16 ~~vLl~~R~~~~~----------~~g~w~~Pgg~ve~--ge~---~---------------~~~~~RE~~EE~g~~~~~~ 65 (128)
T TIGR00586 16 GEIIITRRADGHM----------FAKLLEFPGGKEEG--GET---P---------------EQAVVRELEEEIGIPQHFS 65 (128)
T ss_pred CEEEEEEEeCCCC----------CCCeEECCCcccCC--CCC---H---------------HHHHHHHHHHHHCCcceee
Confidence 3788887754332 24689999886542 111 1 1344589999999986544
Q ss_pred c-eeeeeeeccCCCCCCCCeeeEEEEEeEccCCc--ccccccccccCHHHH
Q 013637 97 G-EWKLWKCVEEPEFGPGLTIHTVYIMGKLLDGN--QILQEGCKWMSTQSC 144 (439)
Q Consensus 97 ~-~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~--~~e~~~~~W~~~~~a 144 (439)
. +..+.|-. ..+...-.||++....+. ..+.....|+++++.
T Consensus 66 ~~~~~~~h~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l 110 (128)
T TIGR00586 66 EFEKLEYEFY------PRHITLWFWLLERWEGGPPGKEGQPEEWWVLVGLL 110 (128)
T ss_pred eEEEEEEEEC------CCcEEEEEEEEEEEcCCCcCcccccccEEeCHHHC
Confidence 3 22333321 235677778888776552 235667789987643
No 119
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=88.09 E-value=1.5 Score=37.32 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=63.5
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccC
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDG 96 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~ 96 (439)
..+||+|+.. .-|+||.+.++.-+ +. .+++..++.++.|+.. .
T Consensus 11 ~~vLl~~~~~---------------~~w~lPgG~ve~gE-----~~---------------~~aa~REl~EE~G~~~--~ 53 (118)
T cd04665 11 DGLLLVRHKD---------------RGWEFPGGHVEPGE-----TI---------------EEAARREVWEETGAEL--G 53 (118)
T ss_pred CEEEEEEeCC---------------CEEECCccccCCCC-----CH---------------HHHHHHHHHHHHCCcc--C
Confidence 5899999841 24999999886322 22 3689999999999988 5
Q ss_pred ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHH
Q 013637 97 GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQ 142 (439)
Q Consensus 97 ~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~ 142 (439)
.+.++..+..+. +. +...+.+|.|....+ ...|...+.|.++.
T Consensus 54 ~~~~l~~~~~~~--~~-~~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~~ 100 (118)
T cd04665 54 SLTLVGYYQVDL--FE-SGFETLVYPAVSAQLEEKASYLETDGPVLFKNE 100 (118)
T ss_pred ceEEEEEEEecC--CC-CcEEEEEEEEEEEecccccccccccCcEEeccC
Confidence 555566665554 33 678889999988877 34799999999754
No 120
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=88.08 E-value=2.9 Score=38.00 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHcCCeeccCc-eeeee--eecc--CCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHH
Q 013637 78 IESALNQILEQLGFGVRDGG-EWKLW--KCVE--EPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 78 ~~~~l~~~l~~~gl~l~~~~-~~~~~--~w~~--~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~ 147 (439)
.++++.++.++.|+...... +.... .+.. .. +.-.+-...+|.+.++.+ +..|-....|+++++++++
T Consensus 81 ~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~--~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 81 EETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEA--GGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred HHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCC--CcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHH
Confidence 47899999999999876433 22211 1222 12 111223345566666443 4578899999999999999
Q ss_pred HHhcC
Q 013637 148 LAEVK 152 (439)
Q Consensus 148 ~~~~~ 152 (439)
+.+.+
T Consensus 159 l~~g~ 163 (180)
T cd03676 159 LKEGE 163 (180)
T ss_pred HHcCC
Confidence 98764
No 121
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=87.11 E-value=1.5 Score=42.65 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=60.9
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+.++||+||...| ...|.||++-++. +|. . .+++..++.++-|+.+..
T Consensus 142 ~~~iLL~rr~~~~------------~g~wslPgG~vE~--GEs---~---------------eeAa~REv~EEtGl~v~~ 189 (256)
T PRK00241 142 GDEILLARHPRHR------------NGVYTVLAGFVEV--GET---L---------------EQCVAREVMEESGIKVKN 189 (256)
T ss_pred CCEEEEEEccCCC------------CCcEeCcccCCCC--CCC---H---------------HHHhhhhhhhccCceeee
Confidence 4699999997654 2468899998864 333 2 477999999999998764
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC----cccccccccccCHHHH
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG----NQILQEGCKWMSTQSC 144 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~~~a 144 (439)
-....--.|- | + ..-..+|.|....+ +..|.....|++.++.
T Consensus 190 ~~~~~s~~~~----~--p-~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~del 235 (256)
T PRK00241 190 LRYVGSQPWP----F--P-HSLMLGFHADYDSGEIVFDPKEIADAQWFRYDEL 235 (256)
T ss_pred eEEEEeEeec----C--C-CeEEEEEEEEecCCcccCCcccEEEEEEECHHHC
Confidence 3322212231 1 2 23456778887655 4468889999999884
No 122
>PLN03143 nudix hydrolase; Provisional
Probab=86.79 E-value=1.8 Score=42.90 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=67.2
Q ss_pred eeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccCc
Q 013637 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (439)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~~ 97 (439)
..+|+||.++|-- .-.|-+|++.++.=.+.. .+.|+.|+.|+-|+....+.
T Consensus 144 ~VlLVrQ~R~pvg----------~~~lE~PAG~lD~~~edp-------------------~~aA~REL~EETG~~~~a~~ 194 (291)
T PLN03143 144 YAVLTEQVRVPVG----------KFVLELPAGMLDDDKGDF-------------------VGTAVREVEEETGIKLKLED 194 (291)
T ss_pred EEEEEEeEecCCC----------cEEEEecccccCCCCCCH-------------------HHHHHHHHHHHHCCccccce
Confidence 3899999998862 226999999887421111 47899999999999987666
Q ss_pred eeeee---------eeccCCCCCCCCeeeEEEEEeEccC-------------C--cccccccccccCHHHHHHHHHhcC
Q 013637 98 EWKLW---------KCVEEPEFGPGLTIHTVYIMGKLLD-------------G--NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 98 ~~~~~---------~w~~~~~~~~~~~~dT~f~~a~~p~-------------~--~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
+..+. ...+-+- .-+-++ ++|++.-.. + |.+|.....|++.+++..+.++.|
T Consensus 195 lv~L~~~~~~~~g~~v~pspG-~~dE~i--~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~k 270 (291)
T PLN03143 195 MVDLTAFLDPSTGCRMFPSPG-GCDEEI--SLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADAK 270 (291)
T ss_pred EEEeeeccccCcCceEEecCC-ccCCeE--EEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhHH
Confidence 55553 1222120 112222 355543321 1 556888899999999998876554
No 123
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=86.02 E-value=1.9 Score=39.94 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=59.8
Q ss_pred hhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHH
Q 013637 9 ILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQ 88 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (439)
+.++..+..++|++|.+. ...|.||++.++.-+ . . .+++..++.++
T Consensus 41 ~~~~~~~~l~vLl~~r~~--------------~g~walPGG~v~~~E--~---~---------------~~aa~Rel~EE 86 (186)
T cd03670 41 HPKSGKPILQFVAIKRPD--------------SGEWAIPGGMVDPGE--K---I---------------SATLKREFGEE 86 (186)
T ss_pred EecCCCCeeEEEEEEeCC--------------CCcCcCCeeeccCCC--C---H---------------HHHHHHHHHHH
Confidence 334445567899999832 257999999996633 2 1 25566777777
Q ss_pred cCCeeccC-----------------ceeeeeeeccCCCCCCCCeeeEEEEEeEccCC---------cccccccccccCHH
Q 013637 89 LGFGVRDG-----------------GEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG---------NQILQEGCKWMSTQ 142 (439)
Q Consensus 89 ~gl~l~~~-----------------~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~---------~~~e~~~~~W~~~~ 142 (439)
.|+.+... ...-|......+.-...-|+.|.=|....++| ..+++.++.|++..
T Consensus 87 t~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~ 166 (186)
T cd03670 87 ALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDID 166 (186)
T ss_pred HcccccccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcc
Confidence 75543111 22234443333300011256777776655433 34578999999887
Q ss_pred HHH
Q 013637 143 SCI 145 (439)
Q Consensus 143 ~al 145 (439)
+..
T Consensus 167 ~l~ 169 (186)
T cd03670 167 SKL 169 (186)
T ss_pred ccc
Confidence 754
No 124
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=84.91 E-value=5.3 Score=34.58 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=58.3
Q ss_pred ceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCee-cc
Q 013637 17 SEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGV-RD 95 (439)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l-~~ 95 (439)
.+.||+|+..+-. -..+.|++|++-... +|. . .+++..++.++.|+.+ ..
T Consensus 12 g~vLl~r~~~~~~---------~~~~~w~~PgG~ve~--gE~---~---------------~~a~~Re~~EE~G~~~~~~ 62 (133)
T cd04685 12 DRVLLLRGDDPDS---------PGPDWWFTPGGGVEP--GES---P---------------EQAARRELREETGITVADL 62 (133)
T ss_pred CeEEEEEEeCCCC---------CCCCEEECCcCCCCC--CCC---H---------------HHHHHHHHHHHHCCccccc
Confidence 3799998765411 235689999987653 322 2 4678899999999988 33
Q ss_pred Ccee-eeeeeccCCCCCCCCeeeEEEEEeEccCCc-------cc---ccccccccCHHHHHH
Q 013637 96 GGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDGN-------QI---LQEGCKWMSTQSCIN 146 (439)
Q Consensus 96 ~~~~-~~~~w~~~~~~~~~~~~dT~f~~a~~p~~~-------~~---e~~~~~W~~~~~al~ 146 (439)
..+. .-.+..+-. +.+-+=...||++.++.++ .. +.....|+++++..+
T Consensus 63 ~~~~~~~~~~f~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~ 122 (133)
T cd04685 63 GPPVWRRDAAFTFL--GVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAA 122 (133)
T ss_pred cceEEEEEEEEEec--CccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhh
Confidence 3221 111112212 1122224568899888642 11 234689999988544
No 125
>PRK08999 hypothetical protein; Provisional
Probab=83.45 E-value=5.4 Score=39.58 Aligned_cols=101 Identities=17% Similarity=0.288 Sum_probs=59.0
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQI 85 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (439)
.+++|.|. +.++||+|++... .-..+|.+|++.+.. +| +. .+++..++
T Consensus 8 ~~~vi~~~--~~~vLL~kR~~~~----------~~~g~w~~PgG~ve~--gE---~~---------------~~aa~RE~ 55 (312)
T PRK08999 8 AAGVIRDA--DGRILLARRPEGK----------HQGGLWEFPGGKVEP--GE---TV---------------EQALAREL 55 (312)
T ss_pred EEEEEECC--CCeEEEEEecCCC----------CCCCeEECCccCCCC--CC---CH---------------HHHHHHHH
Confidence 45556553 3489998875422 135689999876542 11 11 24566899
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC--cccccccccccCHHH
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG--NQILQEGCKWMSTQS 143 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~--~~~e~~~~~W~~~~~ 143 (439)
.++.|+.........-.++.- +.+...-.||.+..+.+ +..|.....|+++++
T Consensus 56 ~EE~Gl~~~~~~~l~~~~h~~-----~~~~~~i~~y~~~~~~~~~~~~e~~~~~Wv~~~e 110 (312)
T PRK08999 56 QEELGIEVTAARPLITVRHDY-----PDKRVRLDVRRVTAWQGEPHGREGQPLAWVAPDE 110 (312)
T ss_pred HHHhCCceecceeEEEEEEEc-----CCCeEEEEEEEEEEecCcccCccCCccEEecHHH
Confidence 999999876543221122221 12344556676666554 234566778998775
No 126
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=83.02 E-value=4.8 Score=37.27 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=63.0
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+.++||+|-++.++. + +.-|.||++.++.-.... .++++.|+.++-|+...
T Consensus 43 ~~~vLl~~R~~~~r~-------~--~G~~~~PGG~~e~~de~~-------------------~~tA~REl~EEtGl~~~- 93 (190)
T PRK10707 43 QPTLLLTQRSIHLRK-------H--AGQVAFPGGAVDPTDASL-------------------IATALREAQEEVAIPPS- 93 (190)
T ss_pred CCEEEEEEeCCcccC-------C--CCcEEcCCcccCCCcccH-------------------HHHHHHHHHHHHCCCcc-
Confidence 347777775543322 2 224689998886421111 47899999999999753
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHH
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~ 147 (439)
.+..+.. ..+- .....|.+.-|++.+... |..|.....|++..++++.
T Consensus 94 -~~~~lg~-l~~~--~~~~~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 94 -AVEVIGV-LPPV--DSSTGYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred -ceEEEEE-eeee--eccCCcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCc
Confidence 3333322 2221 123467777777776554 5678999999999998875
No 127
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=82.77 E-value=5.1 Score=34.66 Aligned_cols=95 Identities=21% Similarity=0.250 Sum_probs=57.2
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
..+.||+||..| .|.+ -+...|.||.+.++.- |. . .+++..++.++.|+...
T Consensus 14 ~~~vlL~~~~~~------~~~~-~~~~~W~lPgG~ie~~--E~---~---------------~~aA~REl~EEtGl~~~- 65 (126)
T cd04662 14 RIEVLLVHPGGP------FWAN-KDLGAWSIPKGEYTEG--ED---P---------------LLAAKREFSEETGFCVD- 65 (126)
T ss_pred cEEEEEEEccCc------cccC-CCCCEEECCcccCCCC--cC---H---------------HHHHHHHHHHHhCCcce-
Confidence 447999999553 1210 2356799999988652 22 2 47899999999999877
Q ss_pred CceeeeeeeccCCCCCC------------CCeeeEEEEEeEccCCc-----ccccccccccC
Q 013637 96 GGEWKLWKCVEEPEFGP------------GLTIHTVYIMGKLLDGN-----QILQEGCKWMS 140 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~------------~~~~dT~f~~a~~p~~~-----~~e~~~~~W~~ 140 (439)
..+..+..+..+. +. -...-..+|.+..|.|+ ..|.....|.+
T Consensus 66 ~~~~~l~~~~~~~--~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 66 GPFIDLGSLKQSG--GKVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred eeEEeEEEEECCC--CeEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 4444555554443 21 11222345555555541 25667777764
No 128
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=79.06 E-value=2.1 Score=46.77 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=47.2
Q ss_pred ccEEEEccCCCCCCCCceEEEecCCeEEEcCCCCCcHHHHHHHHHHcCCCccEEEeCCCchhhhcChHHHHH
Q 013637 207 TNLIVFAPDSVSDDCGNHRFVAQGEALIVDPGCRSEFHEELLKVVASLPRKLIVFVTHHHRDHVDGLSIIQK 278 (439)
Q Consensus 207 ~N~y~i~~~~g~~~~~~s~~vi~g~~vLID~G~~~~~~~~l~~~~~~~~~i~~VilTH~H~DHigG~~~l~~ 278 (439)
.-||++.+. -+-...|-++|=.|||+-|.... .-++.+++-+.+++.|++||.-.|..+|++.+.+
T Consensus 38 pCcYIfpGg----~gdaALFavnGf~iLv~GgserK--S~fwklVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 38 PCCYIFPGG----RGDAALFAVNGFNILVNGGSERK--SCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred ceEEECCCC----CCcceeEeecceEEeecCCcccc--cchHHHHHHHhhhhhhhhcccccCccccchHHHH
Confidence 356777542 22233444566688888887643 3567778888888999999999999999987654
No 129
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=78.21 E-value=11 Score=33.87 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=74.7
Q ss_pred CceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeecc
Q 013637 16 DSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRD 95 (439)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~ 95 (439)
+..+||+||.. ..|.+|++.++. +|. . .+++..++.++-|+..
T Consensus 34 ~~~~LL~~~~~---------------~~~elPgG~vE~--gEt---~---------------~eaA~REl~EETG~~~-- 76 (156)
T TIGR02705 34 KDQWLLTEHKR---------------RGLEFPGGKVEP--GET---S---------------KEAAIREVMEETGAIV-- 76 (156)
T ss_pred CCEEEEEEEcC---------------CcEECCceecCC--CCC---H---------------HHHHHHHHHHHhCcEe--
Confidence 44899999851 249999988764 222 2 4789999999999965
Q ss_pred CceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-ccccccccc-ccCHHHHHHHHHhcCCCCCcCCchhh
Q 013637 96 GGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-NQILQEGCK-WMSTQSCINCLAEVKPSTDRVGPLVV 163 (439)
Q Consensus 96 ~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-~~~e~~~~~-W~~~~~al~~~~~~~~~~~~~~~~~~ 163 (439)
..+.++..+...+ +. ..+=...|+|..... ...|..... +++..++.+.+...+.-+..|.=-++
T Consensus 77 ~~~~~lg~~~~~~--~~-~~~~~~vf~A~~~~~~~~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~ 143 (156)
T TIGR02705 77 KELHYIGQYEVEG--ES-TDFVKDVYFAEVSALESKDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVL 143 (156)
T ss_pred eeeEEEEEEEecC--CC-cEEEEEEEEEEEeccccCCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHH
Confidence 5666777766655 33 566666777776644 224545555 79999999998888765666655443
No 130
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=77.23 E-value=5 Score=34.18 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=50.5
Q ss_pred ccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEE
Q 013637 41 SDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVY 120 (439)
Q Consensus 41 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f 120 (439)
++.|.||++.++. +|. . .+++..++.++.|+.+....+..+.....+ .+.+-+.+
T Consensus 28 ~~~w~lPgG~ve~--~E~---~---------------~~aa~REl~EE~g~~~~~~~l~~~~~~~~~-----~~~~~~~~ 82 (118)
T cd04674 28 RGKLALPGGFIEL--GET---W---------------QDAVARELLEETGVAVDPADIRLFDVRSAP-----DGTLLVFG 82 (118)
T ss_pred CCeEECCceecCC--CCC---H---------------HHHHHHHHHHHHCCcccccEEEEEEEEecC-----CCeEEEEE
Confidence 6779999999974 332 1 367889999999999876655544443332 33454555
Q ss_pred EEeEccCC------cccccccccccCHHHH
Q 013637 121 IMGKLLDG------NQILQEGCKWMSTQSC 144 (439)
Q Consensus 121 ~~a~~p~~------~~~e~~~~~W~~~~~a 144 (439)
|.+....+ .+.|..+..|+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 112 (118)
T cd04674 83 LLPERRAADLPPFEPTDETTERAVVTAPSE 112 (118)
T ss_pred EEeccccccCCCCCCCcceeeEEEccCCcc
Confidence 56544443 3457777777765443
No 131
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=72.59 E-value=8.7 Score=33.21 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=58.9
Q ss_pred eeehhhcCCCCCceeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHH
Q 013637 5 NVALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQ 84 (439)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (439)
|.+++|.+.-+..++|+.|.+- .-|.||++.++. +|. . .+++..+
T Consensus 2 ~~~~~~~~~~~~~~ll~~r~~~---------------~~~~lPgG~ve~--~E~---~---------------~~aa~Re 46 (126)
T cd04663 2 KCPAVLRRNGEVLELLVFEHPL---------------AGFQIVKGTVEP--GET---P---------------EAAALRE 46 (126)
T ss_pred EEEEEEEeCCceEEEEEEEcCC---------------CcEECCCccCCC--CCC---H---------------HHHHHHH
Confidence 4556677554335777776532 248999999874 333 1 4789999
Q ss_pred HHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEc----cCC-------cccccccccccCHHHHHH
Q 013637 85 ILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKL----LDG-------NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 85 ~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~----p~~-------~~~e~~~~~W~~~~~al~ 146 (439)
+.++-|+..... ......| ++. |. ..+....++++.. |.. ++.+.....|++++++.+
T Consensus 47 l~EEtGl~~~~~-~~~~~~~-~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 47 LQEESGLPSFLS-DYILHVW-ERR-FY-QKRHFWHLTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred HHHHHCCeeeee-eecceee-eCC-Ee-eccEEEEEEEEEecCCCcccccCcccCCCCceEEEEEEccccccc
Confidence 999999987221 1122222 222 22 2233344444444 222 345556677999988744
No 132
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=71.74 E-value=22 Score=31.29 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=61.0
Q ss_pred eeEEeecCCCCCCCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeeccCc
Q 013637 18 EFLLVKQTPPPKFNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVRDGG 97 (439)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~~~~ 97 (439)
+-||+|-..+|.-|- |-||++.++. +|. - .+++..++.++-||.++.-.
T Consensus 22 ~iLLvrR~~~p~~g~-----------WalPGG~ve~--GEt---~---------------eeaa~REl~EETgL~~~~~~ 70 (145)
T COG1051 22 RILLVRRANEPGAGY-----------WALPGGFVEI--GET---L---------------EEAARRELKEETGLRVRVLE 70 (145)
T ss_pred EEEEEEecCCCCCCc-----------EeCCCccCCC--CCC---H---------------HHHHHHHHHHHhCCccccee
Confidence 889999888887553 9999998876 333 1 37899999999999954444
Q ss_pred eeeeeeeccCCCCCCCC-eeeEEEEEeEccCC-----cccccccccccCHHHHH
Q 013637 98 EWKLWKCVEEPEFGPGL-TIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCI 145 (439)
Q Consensus 98 ~~~~~~w~~~~~~~~~~-~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al 145 (439)
.++-.=.+. ..+| +.=+.||.+..+.| ++.++....|++..++.
T Consensus 71 --~~~v~~~~~--rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~ 120 (145)
T COG1051 71 --LLAVFDDPG--RDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELP 120 (145)
T ss_pred --EEEEecCCC--CCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHcc
Confidence 344443333 2244 33345556666655 22367777777665544
No 133
>PLN02709 nudix hydrolase
Probab=69.16 E-value=21 Score=34.02 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=61.8
Q ss_pred CceeEEeecCCCCC-CCcccccccccccCCCCCccccccccCccCCCcceecccccccccccchhhHHHHHHHHcCCeec
Q 013637 16 DSEFLLVKQTPPPK-FNDEEYDSYVDSDLWDLPAIKLNHIQGEKSEPTISIQGSEKINLGKFDIESALNQILEQLGFGVR 94 (439)
Q Consensus 16 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~l~ 94 (439)
+.+.||+|.+...+ + +.-|-||++.++.-.... .+.|+.+..++.|+...
T Consensus 50 ~~~vLl~~Rs~~l~~h----------~GqiafPGG~~e~~D~~~-------------------~~tAlRE~~EEiGl~~~ 100 (222)
T PLN02709 50 ELRVILTKRSSTLSSH----------PGEVALPGGKRDEEDKDD-------------------IATALREAREEIGLDPS 100 (222)
T ss_pred ceEEEEEEcCCCCCCC----------CCCccCCCcccCCCCCCH-------------------HHHHHHHHHHHHCCCch
Confidence 44677777765432 2 344778887775532111 47899999999999776
Q ss_pred cCcee-eeeeeccCCCCCCCCeeeEEEEEeEccCC-------cccccccccccCHHHHHH
Q 013637 95 DGGEW-KLWKCVEEPEFGPGLTIHTVYIMGKLLDG-------NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 95 ~~~~~-~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-------~~~e~~~~~W~~~~~al~ 146 (439)
...++ .+... ..+..|--.=|||.+++. +..|-.+.+|++-+..|+
T Consensus 101 ~v~vlg~L~~~------~t~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 101 LVTIISVLEPF------VNKKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLK 154 (222)
T ss_pred heEEeeecCCe------ECCCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhC
Confidence 43332 33222 234467766777777542 457999999998777653
No 134
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=58.13 E-value=81 Score=25.51 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=21.0
Q ss_pred CeeeEEEEEeEccCCcccccccccccCHHH
Q 013637 114 LTIHTVYIMGKLLDGNQILQEGCKWMSTQS 143 (439)
Q Consensus 114 ~~~dT~f~~a~~p~~~~~e~~~~~W~~~~~ 143 (439)
++..-.+|.+.+..++ .+.....|+++++
T Consensus 73 ~~~~~~~~~~~~~~~~-~~~~~~~W~~~ee 101 (118)
T cd03431 73 FRLTLHVYLARLEGDL-LAPDEGRWVPLEE 101 (118)
T ss_pred eEEEEEEEEEEEeCCC-cCccccEEccHHH
Confidence 5788888988876653 3456778998655
No 135
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=53.38 E-value=39 Score=32.75 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHcCCeecc---CceeeeeeeccCCCCC------C---CCeeeEEEEEeEccCC----cccccccccccCH
Q 013637 78 IESALNQILEQLGFGVRD---GGEWKLWKCVEEPEFG------P---GLTIHTVYIMGKLLDG----NQILQEGCKWMST 141 (439)
Q Consensus 78 ~~~~l~~~l~~~gl~l~~---~~~~~~~~w~~~~~~~------~---~~~~dT~f~~a~~p~~----~~~e~~~~~W~~~ 141 (439)
.+++..++.++.|+.+.. +.+..+.+..-..... . .+-+|.+||......+ +..|.....|+++
T Consensus 118 ~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wvs~ 197 (247)
T PLN02552 118 KNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYVNR 197 (247)
T ss_pred HHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEEeH
Confidence 378999999999999543 3344443222111000 1 2578888876333332 5579999999999
Q ss_pred HHHHHHHHhc
Q 013637 142 QSCINCLAEV 151 (439)
Q Consensus 142 ~~al~~~~~~ 151 (439)
++..+++...
T Consensus 198 ~el~~~~~~~ 207 (247)
T PLN02552 198 EELKEMMRKE 207 (247)
T ss_pred HHHHHHHhhc
Confidence 9999877654
No 136
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=50.12 E-value=1.1e+02 Score=25.36 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=39.0
Q ss_pred CCchhhh-cChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEE
Q 013637 264 HHHRDHV-DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (439)
Q Consensus 264 H~H~DHi-gG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l 335 (439)
|.|.++. .....+++..+...+++++.+++.+. +++|+.+.+ |...+.+..+++=.+|.+.+
T Consensus 15 ~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~lg----------i~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~ 81 (122)
T cd02791 15 QWHTMTRTGRVPRLNAHVPEPYVEIHPEDAARLG----------LKEGDLVRVTSRRGEVVLRVRVTDRVRPGEVFV 81 (122)
T ss_pred hhccCCccCChHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEcCCEEEEEEEEECCCcCCCeEEE
Confidence 3455543 33456677777778999999888763 346777665 33455666666655665554
No 137
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=44.39 E-value=1.8e+02 Score=23.84 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=36.3
Q ss_pred ChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEEE
Q 013637 272 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALL 336 (439)
Q Consensus 272 G~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l~ 336 (439)
....+.+..+...+++++.+++.+. +++|+.+.+ |..++.+..+++-.+|.+++.
T Consensus 24 ~~~~l~~~~~~~~v~inp~dA~~lg----------i~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~ 82 (120)
T cd00508 24 RSPRLAALAPEPFVEIHPEDAARLG----------IKDGDLVRVSSRRGSVVVRARVTDRVRPGTVFMP 82 (120)
T ss_pred ccHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEeCCEEEEEEEEECCCcCCCEEEEe
Confidence 4456666667778999999988763 346777665 234455566666666666554
No 138
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=39.42 E-value=9.3 Score=27.96 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=18.2
Q ss_pred cccccccCCCCCccccccccC
Q 013637 36 DSYVDSDLWDLPAIKLNHIQG 56 (439)
Q Consensus 36 ~~~~d~~~~~l~~~~l~~~~~ 56 (439)
++--||||+.||+..|++|-+
T Consensus 36 ~skKdsdLyqLPpslLRRLyd 56 (59)
T PF03823_consen 36 HSKKDSDLYQLPPSLLRRLYD 56 (59)
T ss_pred ccccCcchhhCCHHHHHHHHh
Confidence 567899999999999988754
No 139
>PLN02791 Nudix hydrolase homolog
Probab=38.12 E-value=1.3e+02 Score=34.14 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=47.2
Q ss_pred hhHHHHHHHHcCCeeccCceeeeeee---cc--CCCCCCCCeeeEEEEEe---EccCC----cccccccccccCHHHHHH
Q 013637 79 ESALNQILEQLGFGVRDGGEWKLWKC---VE--EPEFGPGLTIHTVYIMG---KLLDG----NQILQEGCKWMSTQSCIN 146 (439)
Q Consensus 79 ~~~l~~~l~~~gl~l~~~~~~~~~~w---~~--~~~~~~~~~~dT~f~~a---~~p~~----~~~e~~~~~W~~~~~al~ 146 (439)
++++.++-++.|+.+..+.+...-.. +. ... ...+-|+-.|++- ..|.. +..|-+...|++.++..+
T Consensus 79 eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~-~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~ 157 (770)
T PLN02791 79 LSAQRELEEELGIILPKDAFELLFVFLQECVINDGK-FINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS 157 (770)
T ss_pred HHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCC-cceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence 67999999999999866654432221 11 110 1234677667653 23322 457999999999999998
Q ss_pred HHHhc
Q 013637 147 CLAEV 151 (439)
Q Consensus 147 ~~~~~ 151 (439)
++...
T Consensus 158 ~l~~~ 162 (770)
T PLN02791 158 ALAKE 162 (770)
T ss_pred HHhcC
Confidence 88764
No 140
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=37.36 E-value=74 Score=26.59 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCCEEEeCCCCCCCChHHHHHHHHHHHH
Q 013637 369 FQSTYKFLELSPHALIPMHGRVNLWPKHMLCGYLKYER 406 (439)
Q Consensus 369 ~~sL~rL~~l~~~~IvPgHG~~~~~~~~~i~~~L~~~~ 406 (439)
.++++.+..++++.++-|.|.....+...+.++++++.
T Consensus 42 ~e~l~~l~~~~peiliiGTG~~~~~~~~~~~~~l~~~g 79 (109)
T cd05560 42 AAHFEALLALQPEVILLGTGERQRFPPPALLAPLLARG 79 (109)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCcCCHHHHHHHHHcC
Confidence 56677777788999999999977666666666666653
No 141
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.36 E-value=2.4e+02 Score=23.07 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred ChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEE
Q 013637 272 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (439)
Q Consensus 272 G~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l 335 (439)
....+.+..+...+++++.+++.+. +++|+.+.+ |...+++..+++--+|.+.+
T Consensus 20 ~~~~l~~~~~~~~v~i~p~dA~~lg----------i~~Gd~V~v~s~~G~~~~~v~~~~~i~~g~v~~ 77 (116)
T cd02786 20 NLPELRAKEGEPTLLIHPADAAARG----------IADGDLVVVFNDRGSVTLRAKVTDDVPPGVVVA 77 (116)
T ss_pred cCHHHHhhCCCCEEEECHHHHHHcC----------CCCCCEEEEEcCCeEEEEEEEECCCCCCCEEEe
Confidence 3355666667788999999988764 346666655 33456666777666666644
No 142
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=33.14 E-value=31 Score=35.50 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=74.4
Q ss_pred ecCCCCCCCcccccccccccCCCCC---ccccccc---------cCccCCCcceecccccccccccchh-----hHHHHH
Q 013637 23 KQTPPPKFNDEEYDSYVDSDLWDLP---AIKLNHI---------QGEKSEPTISIQGSEKINLGKFDIE-----SALNQI 85 (439)
Q Consensus 23 ~~~~~~~~~~~~~~~~~d~~~~~l~---~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~ 85 (439)
+.+||+.+|-|+==-.||.+=.++. ...|+.+ ..|+.++-|.+...-+.++..+..+ ..+.+.
T Consensus 7 ~~~~~~t~GvE~E~~LVD~~t~~~~~~~~~vl~~~~~~~~~~~v~~El~~~qIEi~T~p~~~~~el~~eL~~~r~~l~~~ 86 (373)
T PRK13516 7 HVSEPFTLGVELELQLVNPHDYDLTQDSSDLLRAVKNQPTAGEIKPEITESMIEIATGVCRDIDQALGQLSAMRDVLVQA 86 (373)
T ss_pred CCCCCCeeEEEEEEEeEcCCCcCcCccHHHHHHhccccccccccChhhhCceEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4556677776655556776655555 2233333 3344444555555445555544433 478889
Q ss_pred HHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC------cc---cccccccccCHHHHHHHHHhcCC
Q 013637 86 LEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG------NQ---ILQEGCKWMSTQSCINCLAEVKP 153 (439)
Q Consensus 86 l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~------~~---~e~~~~~W~~~~~al~~~~~~~~ 153 (439)
++++|+.|.+.+..||++|.+.+- -+..||. .|-+. .. .-+.+..--+.++++..+....+
T Consensus 87 A~~~G~~lva~GthP~~~~~~~~i-t~~~RY~------~l~~~~~~~~~~~~i~G~HVHvg~~d~~~av~~~~~l~~ 156 (373)
T PRK13516 87 ADKLNIGICGGGTHPFQQWQRQRI-CDNPRFQ------YLSELYGYLAKQFTVFGQHVHIGCPSGDDALYLLHGLSR 156 (373)
T ss_pred HHHcCCEEEeecCCCCCCccccCC-CCcHHHH------HHHHHhhhhhhhheeeeeEEEeCCCCHHHHHHHHHHHHh
Confidence 999999999999999999976331 3333454 11111 01 12555666677788888877765
No 143
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.01 E-value=2.3e+02 Score=23.74 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=35.9
Q ss_pred hcChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEE
Q 013637 270 VDGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (439)
Q Consensus 270 igG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l 335 (439)
......+.+..+...+++++.+++.+. +++|+.+.+ |...+++..+++--+|.+.+
T Consensus 20 ~~~~~~l~~~~~~~~v~i~p~dA~~~g----------i~~Gd~V~v~s~~g~~~~~~~~~~~v~~g~v~~ 79 (129)
T cd02782 20 LHNDPRLVKGRNRCTLRIHPDDAAALG----------LADGDKVRVTSAAGSVEAEVEVTDDMMPGVVSL 79 (129)
T ss_pred hhhCchhhccCCCceEEECHHHHHHcC----------CCCCCEEEEEcCCCeEEEEEEECCCcCCCeEEe
Confidence 444556666667778999999988763 346666655 33455666666655666554
No 144
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=32.34 E-value=1.8e+02 Score=23.77 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=42.1
Q ss_pred EEEeCCCchhhhc------ChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCC
Q 013637 259 IVFVTHHHRDHVD------GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGH 328 (439)
Q Consensus 259 ~VilTH~H~DHig------G~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGH 328 (439)
.+++|-.+.+|+. ....+.+..+...+++++.++..+. +++|+.+.+ |...+.+.-+.+-
T Consensus 5 ~~l~t~~~~~~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~lg----------i~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 5 LVLTTGRVLYHYHTGTMTRRAEGLDAIAPEEYVEINPEDAKRLG----------IEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EEEEecchHHHhcccccccccHHHHhhCCCcEEEECHHHHHHcC----------CCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 4555555555332 3346666667778999999988763 346777666 2234555566666
Q ss_pred CCCCEEEE
Q 013637 329 TDGHVALL 336 (439)
Q Consensus 329 t~g~~~l~ 336 (439)
.+|.+.+.
T Consensus 75 ~~g~v~~~ 82 (116)
T cd02790 75 PEGVVFMP 82 (116)
T ss_pred CCCEEEEe
Confidence 67766553
No 145
>PRK13518 carboxylate-amine ligase; Provisional
Probab=32.16 E-value=38 Score=34.69 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=60.5
Q ss_pred cccCccCCCcceecccccccccccchh-----hHHHHHHHHcCCeeccCceeeeeeecc-CCCCCCCCeeeEE----EEE
Q 013637 53 HIQGEKSEPTISIQGSEKINLGKFDIE-----SALNQILEQLGFGVRDGGEWKLWKCVE-EPEFGPGLTIHTV----YIM 122 (439)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~gl~l~~~~~~~~~~w~~-~~~~~~~~~~dT~----f~~ 122 (439)
.+..|+.++-|.|.-.-+.+++.+..+ ..+.+++++.|+.+..-+-.||++|-+ +. .+..||.-- -++
T Consensus 50 ~~~~El~~~qvEi~T~~~~~~~el~~~L~~~r~~l~~aa~~~g~~l~a~GthP~~~~~~~~~--t~~~RY~~m~~~~~~~ 127 (357)
T PRK13518 50 RLDHELFKFVIETQTPLIEDPSEAGAALREVRDALVDHAAAHGYRIAAAGLHPAAKWRELEH--AEKPRYRSQLDRIQYP 127 (357)
T ss_pred cccccccCceEEEcCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCccccCC--CCCcHHHHHHHhcccc
Confidence 356677667777776666666555433 468899999999999999999999976 44 566777543 123
Q ss_pred eEccCCcccccccccccCHHHHHHHHHhcC
Q 013637 123 GKLLDGNQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 123 a~~p~~~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
++. .+--+-+++..--+..+++..+...+
T Consensus 128 ~~~-~~~~G~HVHVg~~d~d~av~v~n~lr 156 (357)
T PRK13518 128 QHR-NTTAGLHVHVGVDDADKAVWIANELR 156 (357)
T ss_pred hhc-ceeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 221 01112334444345556665444443
No 146
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=29.87 E-value=9 Score=35.62 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccCC-----cccccccccccCHHHHHHH
Q 013637 78 IESALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLDG-----NQILQEGCKWMSTQSCINC 147 (439)
Q Consensus 78 ~~~~l~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~~-----~~~e~~~~~W~~~~~al~~ 147 (439)
..+-+.++|....+.-..=.+.-|.=|.+|. .-++|++|.||+..+--- ..+|--.+.|.||=+.+.-
T Consensus 72 ~~~~fl~l~r~~~v~P~~w~l~ewsiw~sps--t~~~r~~Tv~fit~l~~~~h~l~ep~EVp~~~w~sPl~~ls~ 144 (209)
T KOG3904|consen 72 CASQFLELCRGLEVYPDEWSLHEWSIWRSPS--TDDKRPETVFFITKLDKFPHLLSEPSEVPKKIWLSPLESLSP 144 (209)
T ss_pred CHHHHhhcCCccccCCCccccceeEEEeccc--cccccchhHHHHHHHHhhhHhhcccccCCcccccCcccccch
Confidence 3567888898888888888888999999999 679999999999887655 4478888999988776653
No 147
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.00 E-value=3.5e+02 Score=22.15 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=42.3
Q ss_pred EEEeCCCchhhh------cChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCC
Q 013637 259 IVFVTHHHRDHV------DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGH 328 (439)
Q Consensus 259 ~VilTH~H~DHi------gG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGH 328 (439)
.+++|-....|. .....+.+..+...+++++.+++.+. +++|+.+.+ |..++.+.-+++=
T Consensus 5 l~l~t~r~~~~~~s~~~~~~~~~l~~~~~~~~v~i~p~dA~~lg----------i~~Gd~V~v~s~~G~~~~~v~v~~~i 74 (122)
T cd02792 5 LVLTTGRLTEHFHGGNMTRNSPYLAELQPEMFVEISPELAAERG----------IKNGDMVWVSSPRGKIKVKALVTDRV 74 (122)
T ss_pred EEEECCCchhhhcCCcccCCCHHHHhhCCCcEEEECHHHHHHcC----------CCCCCEEEEEcCCceEEEEEEECCCc
Confidence 455664334432 24467777777888999999988874 346777665 2345566666665
Q ss_pred CCCCEEEE
Q 013637 329 TDGHVALL 336 (439)
Q Consensus 329 t~g~~~l~ 336 (439)
-+|.+.+-
T Consensus 75 ~~g~v~~~ 82 (122)
T cd02792 75 KPHEVGIP 82 (122)
T ss_pred CCCEEEEe
Confidence 56655544
No 148
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=26.20 E-value=1.1e+02 Score=30.35 Aligned_cols=135 Identities=16% Similarity=0.208 Sum_probs=82.3
Q ss_pred eehhhcCCCCCceeEEeecCCCCCCCcccccccc-cccCCCCCccccccccCccCCC--cceecccc-cccccccchhhH
Q 013637 6 VALILKNPLNDSEFLLVKQTPPPKFNDEEYDSYV-DSDLWDLPAIKLNHIQGEKSEP--TISIQGSE-KINLGKFDIESA 81 (439)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~l~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 81 (439)
++.|+-|-|.. |..|+||-+||-|.-+ -+|. --.+--++-..+ .+. +| ++.++--+ ++|=-.=+.+.+
T Consensus 232 vt~iL~n~srk-~LVlvqqfRpaVy~G~--~~~~~~g~~~~vDe~~~----~e~-~PaigvTlELcag~Vd~p~s~~e~a 303 (405)
T KOG4432|consen 232 VTCILVNMSRK-ELVLVQQFRPAVYVGK--NRFLKEGIGKPVDEIDF----SES-DPAIGVTLELCAGRVDDPFSDPEKA 303 (405)
T ss_pred eEEEEEeccch-heehhhhcCcceeecc--eeecccCCCCccccccc----ccC-CccceeeeeeecccCCCCcccHHHH
Confidence 45577787755 9999999999986544 2221 111111110001 122 33 23333111 233222345678
Q ss_pred HHHHHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEEEEeEccC-----C----cccccccccccCHHHHHHHHHh
Q 013637 82 LNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVYIMGKLLD-----G----NQILQEGCKWMSTQSCINCLAE 150 (439)
Q Consensus 82 l~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f~~a~~p~-----~----~~~e~~~~~W~~~~~al~~~~~ 150 (439)
-.+..++.|..|..+.+..-++++.-. |..--=-|-||+-.--. | ++.|-....=.|-++|=++..+
T Consensus 304 ~~e~veecGYdlp~~~~k~va~y~sGV--G~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~q 379 (405)
T KOG4432|consen 304 ARESVEECGYDLPEDSFKLVAKYISGV--GQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYRQ 379 (405)
T ss_pred HHHHHHHhCCCCCHHHHhhhheeeccc--CCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHhc
Confidence 888999999999999999999999987 77666678999632211 1 4456666677777777666554
No 149
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.94 E-value=3.9e+02 Score=21.96 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=38.0
Q ss_pred cChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEEEE
Q 013637 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVALLH 337 (439)
Q Consensus 271 gG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l~~ 337 (439)
.....+.+..+...+++++.+++.+. +++|+.+.+ |...+.+..+++=.+|.+.+..
T Consensus 18 ~~~~~l~~~~~~~~v~i~p~dA~~~g----------i~~Gd~V~v~s~~G~i~~~v~v~~~v~~g~v~~~~ 78 (123)
T cd02778 18 ANNPLLHELTPENTLWINPETAARLG----------IKDGDRVEVSSARGKVTGKARLTEGIRPDTVFMPH 78 (123)
T ss_pred ccCHHHHhcCCCCeEEECHHHHHHcC----------CCCCCEEEEEeCCCcEEEEEEEcCCcCCCEEEEec
Confidence 34466777777788999999988864 346777665 3455666666665566665543
No 150
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=23.96 E-value=1.6e+02 Score=24.46 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHHHcCC-CCEEEeCCCCCCCChHHHHHHHHHHHH
Q 013637 369 FQSTYKFLELS-PHALIPMHGRVNLWPKHMLCGYLKYER 406 (439)
Q Consensus 369 ~~sL~rL~~l~-~~~IvPgHG~~~~~~~~~i~~~L~~~~ 406 (439)
.+++..+...+ +++++-|.|.-...+...+.++++.+.
T Consensus 41 ~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~g 79 (109)
T cd00248 41 PEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAG 79 (109)
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcC
Confidence 45566666666 999999999977666666667776553
No 151
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=23.76 E-value=55 Score=32.30 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=62.0
Q ss_pred ccCccCCCcceecccccccccccchh-----hHHHHHHHHcCCeeccCceeeeeeeccCCCCCCCCeeeEEE--EEeEcc
Q 013637 54 IQGEKSEPTISIQGSEKINLGKFDIE-----SALNQILEQLGFGVRDGGEWKLWKCVEEPEFGPGLTIHTVY--IMGKLL 126 (439)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~gl~l~~~~~~~~~~w~~~~~~~~~~~~dT~f--~~a~~p 126 (439)
+..|+.++-|++...-+.++..+..+ ..+.++++++|+.+...+..||++|...+ ..+..||+--+ | +.+-
T Consensus 38 ~~~El~~~qiEi~t~p~~~~~~l~~~l~~~~~~l~~~a~~~g~~l~~~G~hP~~~~~~~~-~~~~~RY~~m~~~~-g~~~ 115 (287)
T TIGR02050 38 FKHELFESQVELATPVCTTLAEAAAQIRAVRARLVQAASDHGLRICGAGTHPFARWRRQE-VADNPRYQRLLERY-GYVA 115 (287)
T ss_pred cChhhhccEEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCccCC-CCcHHHHHHHHHHH-HHHH
Confidence 66777777777776665555544333 47889999999999999999999997744 26677776221 0 0000
Q ss_pred CC--cccccccccccCHHHHHHHHHhcC
Q 013637 127 DG--NQILQEGCKWMSTQSCINCLAEVK 152 (439)
Q Consensus 127 ~~--~~~e~~~~~W~~~~~al~~~~~~~ 152 (439)
.. -.+-+.+..--+++++++.+....
T Consensus 116 ~~~~~~g~hVhv~v~d~~~~i~~~n~l~ 143 (287)
T TIGR02050 116 RQQLVFGLHVHVGVPSPDDAVAVLNRLL 143 (287)
T ss_pred HhHceeeEEEEeCCCCHHHHHHHHHHHH
Confidence 00 113455555556777777666543
No 152
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.44 E-value=3.4e+02 Score=22.11 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCC-----CCCCCCEEEEECCccEEEEcc
Q 013637 282 DAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSP-----GHTDGHVALLHASTNSLIVGD 347 (439)
Q Consensus 282 ~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tp-----GHt~g~~~l~~~~~~iLftGD 347 (439)
...+++++.+++.+. +++|+.+.+ |...+++..+. +=-+|.+.++..+.+.|...|
T Consensus 30 ~~~v~i~p~dA~~lg----------I~dGd~V~v~s~~G~i~~~a~v~~~~~~~~i~~g~v~~~~~~~N~L~~~~ 94 (112)
T cd02787 30 RDVVFMNPDDIARLG----------LKAGDRVDLESAFGDGQGRIVRGFRVVEYDIPRGCLAAYYPEGNVLVPLD 94 (112)
T ss_pred ccEEEECHHHHHHhC----------CCCCCEEEEEecCCCCeEEEEeccceeecCCCCCcEEEeeCcceecCCcc
Confidence 567999999988874 346776665 34445555443 444666665544445544433
No 153
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.11 E-value=4.8e+02 Score=21.55 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=34.9
Q ss_pred cChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEE
Q 013637 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (439)
Q Consensus 271 gG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l 335 (439)
.....+.+..+ ..+++++.+++.+. +++|+.+.+ |...+++.-+++--+|.+++
T Consensus 19 ~~~~~l~~~~~-~~v~i~p~~A~~~g----------i~~Gd~V~v~s~~g~i~~~a~~~~~v~~g~v~~ 76 (121)
T cd02794 19 DNVPWLREAFP-QEVWINPLDAAARG----------IKDGDRVLVFNDRGKVIRPVKVTERIMPGVVAL 76 (121)
T ss_pred cChHHHHhcCC-CCEEECHHHHHHcC----------CCCCCEEEEEcCCceEEEEEEECCCccCCEEEe
Confidence 44556666553 45999999988764 346666665 33455666777766776654
No 154
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.80 E-value=4.9e+02 Score=21.57 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=37.1
Q ss_pred cChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEE
Q 013637 271 DGLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (439)
Q Consensus 271 gG~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l 335 (439)
.....+.+..|...+++++.+++.+. +++|+.+.+ |...+++..+++-.+|.+.+
T Consensus 20 ~~~~~l~~~~~~~~v~i~p~dA~~~g----------i~~Gd~V~v~s~~G~i~~~a~~~~~v~~g~v~~ 78 (124)
T cd02785 20 SNVPWLLELQPEPRVKINPIDAAARG----------IAHGDLVEVYNDRGSVVCKAKVDDGIQPGVVTA 78 (124)
T ss_pred cCHHHHHhhCCCCeEEECHHHHHHcC----------CCCCCEEEEEeCCCEEEEEEEECCCcCCCEEEe
Confidence 33456666667888999999988763 346777665 33456666677766776644
No 155
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.70 E-value=5e+02 Score=21.60 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=34.4
Q ss_pred ChHHHHHhCCCCEEEeCHhHHHHhccCCCCCCceecCCCceEEE----CCeEEEEEeCCCCCCCCEEE
Q 013637 272 GLSIIQKCNPDAILLAHENTMRRIGKDDWSLGYTSVSGSEDICV----GGQRLTVVFSPGHTDGHVAL 335 (439)
Q Consensus 272 G~~~l~~~~p~a~V~~~~~~~~~l~~~~~~~~~~~v~~g~~l~l----Gg~~l~vi~tpGHt~g~~~l 335 (439)
....+.+..|...+++++.+++.+. +++|+.+.+ |...+++.-+++--+|.+++
T Consensus 22 ~~~~l~~~~~~~~v~inp~dA~~~g----------i~~Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~ 79 (130)
T cd02781 22 QLPSLRELHPDPVAEINPETAAKLG----------IADGDWVWVETPRGRARQKARLTPGIRPGVVRA 79 (130)
T ss_pred ccHHHHHcCCCCEEEECHHHHHHcC----------CCCCCEEEEECCCCEEEEEEEECCCCCCCEEEE
Confidence 3455666667778999999988763 346666655 33445555666555666544
Done!