Query 013638
Match_columns 439
No_of_seqs 184 out of 1319
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:53:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 4E-160 8E-165 1235.6 31.8 395 25-439 24-420 (582)
2 PRK13529 malate dehydrogenase; 100.0 3E-159 7E-164 1251.5 36.1 403 23-439 8-413 (563)
3 PTZ00317 NADP-dependent malic 100.0 6E-158 1E-162 1241.3 34.8 401 24-439 11-412 (559)
4 PLN03129 NADP-dependent malic 100.0 9E-156 2E-160 1228.9 34.5 392 29-439 39-432 (581)
5 PF00390 malic: Malic enzyme, 100.0 1E-85 2.2E-90 612.1 6.8 181 106-286 1-182 (182)
6 COG0281 SfcA Malic enzyme [Ene 100.0 1.3E-81 2.7E-86 641.8 21.2 292 65-439 1-296 (432)
7 PRK12862 malic enzyme; Reviewe 100.0 2.8E-75 6E-80 637.8 22.1 259 107-439 25-288 (763)
8 PRK12861 malic enzyme; Reviewe 100.0 5.2E-75 1.1E-79 633.0 22.2 260 107-439 21-284 (764)
9 PRK07232 bifunctional malic en 100.0 5.5E-75 1.2E-79 633.0 22.2 259 107-439 17-280 (752)
10 PF03949 Malic_M: Malic enzyme 100.0 1E-44 2.2E-49 353.5 10.9 137 296-439 1-137 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 5.4E-43 1.2E-47 341.1 14.1 134 296-439 1-137 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 7.9E-43 1.7E-47 344.0 13.9 136 296-439 1-136 (279)
13 cd05311 NAD_bind_2_malic_enz N 99.9 1E-22 2.2E-27 195.4 11.8 123 296-439 1-124 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.6 2.8E-07 6E-12 75.7 8.7 82 298-439 1-82 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.4 0.00099 2.2E-08 70.5 11.0 149 242-432 105-291 (425)
16 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0025 5.5E-08 67.2 9.9 150 243-432 94-281 (413)
17 PRK14982 acyl-ACP reductase; P 96.8 0.0038 8.2E-08 64.4 7.7 115 265-427 119-236 (340)
18 PRK14192 bifunctional 5,10-met 96.6 0.0085 1.8E-07 60.3 8.8 85 298-428 137-222 (283)
19 TIGR00936 ahcY adenosylhomocys 96.5 0.015 3.3E-07 61.4 10.4 61 289-367 157-227 (406)
20 PTZ00075 Adenosylhomocysteinas 96.5 0.028 6.1E-07 60.5 12.4 111 289-432 216-333 (476)
21 cd01080 NAD_bind_m-THF_DH_Cycl 96.3 0.017 3.6E-07 54.0 7.8 70 313-428 37-107 (168)
22 PRK14175 bifunctional 5,10-met 95.9 0.021 4.6E-07 57.8 7.1 129 253-428 76-221 (286)
23 TIGR01035 hemA glutamyl-tRNA r 95.7 0.032 7E-07 58.6 7.9 107 297-432 158-265 (417)
24 PLN02494 adenosylhomocysteinas 95.7 0.033 7.2E-07 60.0 8.0 56 294-367 231-286 (477)
25 cd05213 NAD_bind_Glutamyl_tRNA 95.6 0.048 1E-06 55.0 8.4 121 276-431 139-259 (311)
26 PRK00045 hemA glutamyl-tRNA re 95.5 0.039 8.4E-07 58.0 7.8 104 299-432 162-267 (423)
27 cd05211 NAD_bind_Glu_Leu_Phe_V 95.5 0.072 1.6E-06 51.6 8.8 115 299-431 2-119 (217)
28 PRK08306 dipicolinate synthase 95.2 0.051 1.1E-06 54.7 7.0 98 304-432 136-233 (296)
29 PLN00203 glutamyl-tRNA reducta 95.0 0.048 1E-06 59.3 6.8 107 301-432 246-354 (519)
30 PRK14031 glutamate dehydrogena 95.0 0.47 1E-05 50.9 14.0 173 243-432 134-333 (444)
31 PTZ00079 NADP-specific glutama 94.9 0.5 1.1E-05 50.9 13.7 168 243-432 143-343 (454)
32 PRK13940 glutamyl-tRNA reducta 94.8 0.018 4E-07 60.8 2.8 120 276-427 142-262 (414)
33 cd05212 NAD_bind_m-THF_DH_Cycl 94.7 0.25 5.5E-06 44.9 9.6 82 302-429 10-92 (140)
34 PLN02477 glutamate dehydrogena 94.6 0.45 9.7E-06 50.6 12.5 170 243-430 112-302 (410)
35 PRK14191 bifunctional 5,10-met 94.6 0.092 2E-06 53.2 7.0 130 253-428 75-220 (285)
36 PRK09414 glutamate dehydrogena 94.6 0.46 1E-05 51.0 12.6 168 243-430 138-332 (445)
37 PF00670 AdoHcyase_NAD: S-aden 94.5 0.14 3E-06 48.1 7.3 100 297-432 3-102 (162)
38 TIGR02853 spore_dpaA dipicolin 94.2 0.08 1.7E-06 53.2 5.6 106 296-432 127-232 (287)
39 cd01076 NAD_bind_1_Glu_DH NAD( 94.2 0.2 4.4E-06 48.7 8.2 118 297-431 8-128 (227)
40 PRK14176 bifunctional 5,10-met 93.8 0.17 3.8E-06 51.3 7.2 85 299-429 143-228 (287)
41 PF01488 Shikimate_DH: Shikima 93.7 0.073 1.6E-06 47.3 3.8 93 317-431 6-99 (135)
42 PRK14030 glutamate dehydrogena 93.7 1.1 2.3E-05 48.3 13.1 171 243-431 134-333 (445)
43 cd01078 NAD_bind_H4MPT_DH NADP 93.7 0.16 3.5E-06 47.1 6.3 54 299-367 7-61 (194)
44 PRK10792 bifunctional 5,10-met 93.6 0.18 4E-06 51.1 6.9 83 300-428 139-222 (285)
45 PRK12549 shikimate 5-dehydroge 93.6 0.11 2.4E-06 51.9 5.4 49 305-367 112-160 (284)
46 cd05313 NAD_bind_2_Glu_DH NAD( 93.6 0.37 8.1E-06 48.1 9.0 115 298-430 16-142 (254)
47 TIGR00518 alaDH alanine dehydr 93.6 0.16 3.4E-06 52.8 6.5 222 156-432 19-259 (370)
48 cd01075 NAD_bind_Leu_Phe_Val_D 93.4 0.3 6.6E-06 46.4 7.6 101 299-431 5-107 (200)
49 PRK14194 bifunctional 5,10-met 93.2 0.25 5.3E-06 50.5 7.0 53 300-367 139-192 (301)
50 PRK14189 bifunctional 5,10-met 93.1 0.24 5.1E-06 50.3 6.8 84 300-429 138-222 (285)
51 PRK08328 hypothetical protein; 92.9 0.056 1.2E-06 52.5 1.9 123 281-439 6-147 (231)
52 PRK12749 quinate/shikimate deh 92.5 0.2 4.4E-06 50.4 5.4 49 305-367 109-157 (288)
53 cd01079 NAD_bind_m-THF_DH NAD 92.5 0.47 1E-05 45.9 7.5 103 302-429 35-148 (197)
54 PRK14183 bifunctional 5,10-met 92.3 0.37 8E-06 48.8 6.8 85 299-429 136-221 (281)
55 PLN02928 oxidoreductase family 92.0 0.75 1.6E-05 47.5 8.9 117 297-432 120-254 (347)
56 PF01262 AlaDh_PNT_C: Alanine 92.0 0.069 1.5E-06 49.0 1.2 95 322-432 19-131 (168)
57 PRK14178 bifunctional 5,10-met 91.9 0.34 7.3E-06 49.1 6.1 84 299-428 131-215 (279)
58 COG0373 HemA Glutamyl-tRNA red 91.9 0.28 6E-06 52.2 5.7 167 201-432 94-263 (414)
59 PRK14027 quinate/shikimate deh 91.9 0.25 5.4E-06 49.7 5.1 57 289-367 104-160 (283)
60 PF02882 THF_DHG_CYH_C: Tetrah 91.8 0.63 1.4E-05 43.4 7.4 84 300-429 16-100 (160)
61 PRK14190 bifunctional 5,10-met 91.8 0.45 9.8E-06 48.3 6.9 83 300-428 138-221 (284)
62 PF00899 ThiF: ThiF family; I 91.8 0.21 4.6E-06 43.8 4.0 102 323-439 2-121 (135)
63 cd01065 NAD_bind_Shikimate_DH 91.8 0.34 7.4E-06 42.7 5.3 49 305-367 4-52 (155)
64 PRK09424 pntA NAD(P) transhydr 91.7 0.24 5.2E-06 54.0 5.2 94 324-432 166-277 (509)
65 TIGR01809 Shik-DH-AROM shikima 91.7 0.29 6.3E-06 48.9 5.3 108 288-427 99-209 (282)
66 TIGR00561 pntA NAD(P) transhyd 91.6 0.26 5.6E-06 53.8 5.2 124 295-433 134-277 (511)
67 PRK14179 bifunctional 5,10-met 91.4 0.5 1.1E-05 47.9 6.7 130 253-428 76-221 (284)
68 PRK00257 erythronate-4-phospha 91.3 0.89 1.9E-05 47.8 8.6 53 299-366 95-147 (381)
69 PRK12548 shikimate 5-dehydroge 91.0 0.38 8.3E-06 48.1 5.4 58 288-367 102-159 (289)
70 PRK14177 bifunctional 5,10-met 90.8 0.73 1.6E-05 46.8 7.2 83 301-429 140-223 (284)
71 PRK14172 bifunctional 5,10-met 90.7 0.74 1.6E-05 46.6 7.2 128 253-429 76-222 (278)
72 PRK14170 bifunctional 5,10-met 90.5 0.75 1.6E-05 46.7 7.0 131 253-429 75-221 (284)
73 PRK14174 bifunctional 5,10-met 90.3 0.95 2.1E-05 46.2 7.6 134 253-428 75-226 (295)
74 PRK00258 aroE shikimate 5-dehy 90.3 0.51 1.1E-05 46.8 5.5 49 305-367 107-156 (278)
75 PRK14184 bifunctional 5,10-met 90.3 0.66 1.4E-05 47.1 6.4 134 253-428 75-224 (286)
76 PF01210 NAD_Gly3P_dh_N: NAD-d 90.0 0.32 6.9E-06 44.1 3.5 86 325-434 1-93 (157)
77 COG0169 AroE Shikimate 5-dehyd 90.0 0.51 1.1E-05 47.8 5.3 49 306-366 110-158 (283)
78 PRK14166 bifunctional 5,10-met 89.9 0.94 2E-05 46.0 7.1 131 253-429 74-221 (282)
79 PRK14187 bifunctional 5,10-met 89.8 0.98 2.1E-05 46.1 7.2 84 300-429 140-224 (294)
80 TIGR02354 thiF_fam2 thiamine b 89.3 0.33 7E-06 46.4 3.2 36 323-369 21-56 (200)
81 PRK14188 bifunctional 5,10-met 89.3 0.84 1.8E-05 46.5 6.3 43 300-345 138-181 (296)
82 PLN02516 methylenetetrahydrofo 89.1 1.1 2.4E-05 45.8 7.0 131 253-429 83-231 (299)
83 PRK07066 3-hydroxybutyryl-CoA 88.9 0.28 6.1E-06 50.3 2.6 31 324-366 8-38 (321)
84 PRK14171 bifunctional 5,10-met 88.8 1.2 2.6E-05 45.3 7.0 131 253-429 76-223 (288)
85 PF02826 2-Hacid_dh_C: D-isome 88.7 1.1 2.3E-05 41.6 6.0 38 320-369 33-70 (178)
86 PRK15438 erythronate-4-phospha 88.7 2.1 4.5E-05 45.1 8.8 54 298-366 94-147 (378)
87 PRK14169 bifunctional 5,10-met 88.6 1.3 2.8E-05 45.0 7.1 85 299-429 135-220 (282)
88 PRK14193 bifunctional 5,10-met 88.6 1.2 2.7E-05 45.2 6.9 86 300-429 138-224 (284)
89 PRK00676 hemA glutamyl-tRNA re 88.6 0.42 9E-06 49.6 3.6 73 276-368 136-208 (338)
90 PRK14168 bifunctional 5,10-met 88.5 1.2 2.7E-05 45.4 6.9 90 298-429 139-229 (297)
91 PRK12550 shikimate 5-dehydroge 88.2 0.82 1.8E-05 45.8 5.3 56 289-367 100-155 (272)
92 PRK08644 thiamine biosynthesis 88.0 0.46 9.9E-06 45.7 3.2 33 324-367 29-61 (212)
93 PRK14182 bifunctional 5,10-met 87.9 1.6 3.4E-05 44.4 7.1 84 300-429 137-221 (282)
94 PRK14180 bifunctional 5,10-met 87.8 1.6 3.5E-05 44.3 7.1 131 253-429 75-222 (282)
95 PRK14173 bifunctional 5,10-met 87.8 1.5 3.3E-05 44.6 7.0 84 300-429 135-219 (287)
96 TIGR02356 adenyl_thiF thiazole 87.7 0.49 1.1E-05 44.9 3.2 105 317-439 18-140 (202)
97 PRK14181 bifunctional 5,10-met 87.7 1.6 3.4E-05 44.5 7.0 90 298-429 131-221 (287)
98 PF00208 ELFV_dehydrog: Glutam 87.6 0.56 1.2E-05 46.3 3.7 122 295-431 6-137 (244)
99 cd00757 ThiF_MoeB_HesA_family 87.4 0.51 1.1E-05 45.5 3.2 105 317-439 18-140 (228)
100 PRK02842 light-independent pro 87.3 3.4 7.4E-05 43.7 9.5 187 153-417 176-369 (427)
101 PRK07574 formate dehydrogenase 87.3 4.1 8.9E-05 43.0 10.1 95 261-368 110-225 (385)
102 TIGR02355 moeB molybdopterin s 87.2 0.53 1.2E-05 46.1 3.3 105 317-439 21-143 (240)
103 PRK12475 thiamine/molybdopteri 87.2 0.53 1.2E-05 48.5 3.4 106 316-439 20-145 (338)
104 PRK08605 D-lactate dehydrogena 87.1 2.3 5E-05 43.5 7.9 37 320-367 143-179 (332)
105 KOG0029 Amine oxidase [Seconda 87.1 0.28 6E-06 53.3 1.3 34 324-360 16-49 (501)
106 PLN02616 tetrahydrofolate dehy 86.6 1.8 3.9E-05 45.5 6.9 84 300-429 211-295 (364)
107 PLN00106 malate dehydrogenase 86.6 1.6 3.6E-05 44.8 6.5 111 305-438 4-130 (323)
108 PRK14167 bifunctional 5,10-met 86.5 1.9 4.1E-05 44.2 6.8 88 300-429 137-225 (297)
109 cd01485 E1-1_like Ubiquitin ac 86.4 0.63 1.4E-05 44.2 3.2 35 324-369 20-54 (198)
110 PRK08410 2-hydroxyacid dehydro 86.3 9 0.00019 38.9 11.6 95 261-368 59-178 (311)
111 PF07992 Pyr_redox_2: Pyridine 86.1 0.73 1.6E-05 41.7 3.3 32 325-368 1-32 (201)
112 PRK05600 thiamine biosynthesis 86.0 0.57 1.2E-05 48.9 2.9 122 282-439 19-160 (370)
113 KOG0685 Flavin-containing amin 86.0 0.3 6.5E-06 52.8 0.8 21 324-344 22-42 (498)
114 PLN03139 formate dehydrogenase 85.9 5.3 0.00011 42.2 10.0 95 261-368 117-232 (386)
115 PF00056 Ldh_1_N: lactate/mala 85.9 0.18 3.9E-06 45.4 -0.8 96 325-438 2-113 (141)
116 PRK14185 bifunctional 5,10-met 85.5 2.4 5.1E-05 43.4 6.9 88 300-429 137-225 (293)
117 PRK14186 bifunctional 5,10-met 85.5 2.4 5.3E-05 43.3 7.0 84 300-429 138-222 (297)
118 cd01483 E1_enzyme_family Super 85.2 0.81 1.8E-05 40.4 3.1 100 325-439 1-118 (143)
119 PRK05690 molybdopterin biosynt 85.2 0.84 1.8E-05 44.8 3.5 105 317-439 29-151 (245)
120 PLN02897 tetrahydrofolate dehy 85.2 2.4 5.2E-05 44.3 6.9 84 300-429 194-278 (345)
121 PRK08223 hypothetical protein; 85.1 0.5 1.1E-05 48.0 1.9 127 279-439 4-148 (287)
122 TIGR03140 AhpF alkyl hydropero 85.1 1.6 3.6E-05 46.9 5.9 86 254-344 137-233 (515)
123 cd01487 E1_ThiF_like E1_ThiF_l 85.0 0.86 1.9E-05 42.4 3.3 100 325-439 1-118 (174)
124 PRK12480 D-lactate dehydrogena 84.7 3.7 8.1E-05 42.1 8.1 58 298-367 105-178 (330)
125 TIGR02992 ectoine_eutC ectoine 84.7 3.7 8.1E-05 41.8 8.0 86 324-429 130-216 (326)
126 cd05197 GH4_glycoside_hydrolas 84.4 0.81 1.7E-05 48.7 3.2 77 324-413 1-79 (425)
127 TIGR01381 E1_like_apg7 E1-like 84.4 0.79 1.7E-05 51.4 3.2 39 321-370 336-374 (664)
128 cd00755 YgdL_like Family of ac 84.2 0.91 2E-05 44.5 3.2 37 322-369 10-46 (231)
129 cd01492 Aos1_SUMO Ubiquitin ac 84.0 0.85 1.8E-05 43.3 2.9 39 316-368 17-55 (197)
130 TIGR00507 aroE shikimate 5-deh 83.9 1.9 4E-05 42.5 5.3 55 289-366 94-148 (270)
131 PRK07878 molybdopterin biosynt 83.6 0.66 1.4E-05 48.6 2.1 106 316-439 38-161 (392)
132 PRK15469 ghrA bifunctional gly 83.4 4.9 0.00011 41.0 8.2 35 320-366 133-167 (312)
133 PRK08762 molybdopterin biosynt 83.3 0.97 2.1E-05 46.9 3.2 105 317-439 132-254 (376)
134 PTZ00117 malate dehydrogenase; 83.1 2.5 5.5E-05 43.0 6.0 97 323-437 5-116 (319)
135 cd00650 LDH_MDH_like NAD-depen 82.9 1.2 2.5E-05 43.7 3.4 98 326-438 1-114 (263)
136 PRK09310 aroDE bifunctional 3- 82.9 1.9 4.1E-05 46.5 5.2 47 305-366 317-363 (477)
137 KOG2337 Ubiquitin activating E 82.8 0.97 2.1E-05 49.6 3.0 38 321-369 338-375 (669)
138 PRK13243 glyoxylate reductase; 82.7 15 0.00033 37.7 11.5 93 262-367 64-182 (333)
139 PRK07688 thiamine/molybdopteri 82.6 1.2 2.6E-05 46.0 3.5 106 316-439 20-145 (339)
140 COG0190 FolD 5,10-methylene-te 82.4 2.7 5.9E-05 42.8 5.8 132 252-429 73-220 (283)
141 PRK11790 D-3-phosphoglycerate 82.1 9.4 0.0002 40.4 10.0 94 261-367 71-183 (409)
142 PRK05597 molybdopterin biosynt 82.1 1.3 2.8E-05 45.9 3.5 106 316-439 24-147 (355)
143 PRK08374 homoserine dehydrogen 82.0 8.3 0.00018 39.7 9.3 89 324-417 3-100 (336)
144 PRK06436 glycerate dehydrogena 81.9 5.4 0.00012 40.6 7.8 36 320-367 119-154 (303)
145 PTZ00082 L-lactate dehydrogena 81.6 2.8 6E-05 42.9 5.7 95 324-436 7-121 (321)
146 PRK15317 alkyl hydroperoxide r 81.5 2.3 5E-05 45.7 5.3 94 257-367 139-243 (517)
147 PRK15116 sulfur acceptor prote 81.3 1.5 3.2E-05 44.2 3.4 41 321-372 28-68 (268)
148 PRK07634 pyrroline-5-carboxyla 81.3 1.6 3.5E-05 41.6 3.6 22 323-344 4-25 (245)
149 PRK09754 phenylpropionate diox 81.1 2.2 4.7E-05 44.0 4.8 36 322-367 2-37 (396)
150 COG0686 Ald Alanine dehydrogen 81.1 0.89 1.9E-05 47.2 1.9 87 324-432 169-260 (371)
151 PRK13581 D-3-phosphoglycerate 80.7 12 0.00026 40.8 10.5 94 261-367 60-172 (526)
152 PTZ00325 malate dehydrogenase; 80.6 6.5 0.00014 40.5 8.0 100 322-439 7-121 (321)
153 cd01979 Pchlide_reductase_N Pc 80.5 11 0.00023 39.4 9.7 129 149-344 162-297 (396)
154 PF13738 Pyr_redox_3: Pyridine 79.6 1.8 3.9E-05 39.3 3.2 30 327-367 1-30 (203)
155 PLN02819 lysine-ketoglutarate 79.6 4.6 9.9E-05 47.8 7.2 100 323-433 203-327 (1042)
156 COG0111 SerA Phosphoglycerate 79.4 10 0.00022 39.2 8.9 52 300-366 104-173 (324)
157 PRK06487 glycerate dehydrogena 79.4 7.4 0.00016 39.7 7.9 68 288-367 89-180 (317)
158 PLN02306 hydroxypyruvate reduc 79.3 8.8 0.00019 40.5 8.6 95 320-432 162-264 (386)
159 PF02737 3HCDH_N: 3-hydroxyacy 79.2 1.9 4E-05 40.3 3.2 31 325-367 1-31 (180)
160 PF00070 Pyr_redox: Pyridine n 79.2 2.6 5.6E-05 33.6 3.6 35 325-371 1-35 (80)
161 PRK07411 hypothetical protein; 79.0 1.7 3.6E-05 45.7 3.1 106 316-439 34-157 (390)
162 cd05296 GH4_P_beta_glucosidase 78.6 1.9 4.1E-05 45.8 3.5 85 324-420 1-87 (419)
163 PRK05086 malate dehydrogenase; 78.5 6.1 0.00013 40.2 7.0 98 324-439 1-114 (312)
164 PRK08291 ectoine utilization p 77.7 5.4 0.00012 40.6 6.3 86 324-429 133-219 (330)
165 PRK14619 NAD(P)H-dependent gly 77.5 5.5 0.00012 39.9 6.3 32 324-367 5-36 (308)
166 PF01494 FAD_binding_3: FAD bi 77.5 2 4.3E-05 41.6 3.0 35 324-370 2-36 (356)
167 cd01486 Apg7 Apg7 is an E1-lik 77.3 2.2 4.8E-05 43.9 3.3 34 325-369 1-34 (307)
168 TIGR01292 TRX_reduct thioredox 77.1 2.1 4.5E-05 41.0 3.0 31 325-367 2-32 (300)
169 KOG0069 Glyoxylate/hydroxypyru 77.0 10 0.00023 39.5 8.2 48 298-345 120-184 (336)
170 COG0334 GdhA Glutamate dehydro 76.7 48 0.001 35.7 13.1 119 241-373 110-246 (411)
171 cd01491 Ube1_repeat1 Ubiquitin 76.4 2.3 4.9E-05 43.2 3.1 34 324-368 20-53 (286)
172 PRK06223 malate dehydrogenase; 75.8 3.2 6.8E-05 41.4 4.0 32 324-366 3-34 (307)
173 PRK06129 3-hydroxyacyl-CoA deh 75.7 5.1 0.00011 40.1 5.5 32 324-367 3-34 (308)
174 cd05291 HicDH_like L-2-hydroxy 75.6 5.5 0.00012 40.1 5.6 95 325-437 2-111 (306)
175 PTZ00345 glycerol-3-phosphate 75.5 3.4 7.4E-05 43.2 4.3 22 324-345 12-33 (365)
176 cd01484 E1-2_like Ubiquitin ac 75.4 2.8 6E-05 41.3 3.4 100 325-439 1-120 (234)
177 PF05834 Lycopene_cycl: Lycope 75.0 3.5 7.5E-05 42.4 4.1 35 326-370 2-36 (374)
178 PRK06153 hypothetical protein; 74.8 2 4.4E-05 45.5 2.4 40 316-369 172-211 (393)
179 COG5322 Predicted dehydrogenas 74.5 6 0.00013 40.6 5.5 46 297-345 144-190 (351)
180 PRK06932 glycerate dehydrogena 73.9 13 0.00028 37.9 7.8 27 319-345 143-169 (314)
181 PLN02520 bifunctional 3-dehydr 73.2 5.5 0.00012 43.6 5.3 35 317-366 376-410 (529)
182 cd01488 Uba3_RUB Ubiquitin act 72.8 3.1 6.8E-05 42.3 3.1 34 325-369 1-34 (291)
183 TIGR01327 PGDH D-3-phosphoglyc 72.2 9.4 0.0002 41.6 6.8 92 263-367 60-170 (525)
184 PRK12409 D-amino acid dehydrog 70.7 3.9 8.5E-05 41.9 3.3 33 324-368 2-34 (410)
185 PRK15409 bifunctional glyoxyla 70.7 11 0.00024 38.7 6.5 56 288-343 89-165 (323)
186 TIGR01470 cysG_Nterm siroheme 70.5 4.4 9.6E-05 38.8 3.4 26 321-346 7-32 (205)
187 cd01489 Uba2_SUMO Ubiquitin ac 70.5 4.5 9.8E-05 41.6 3.7 34 325-369 1-34 (312)
188 PRK06141 ornithine cyclodeamin 70.5 18 0.00038 36.8 7.9 84 324-428 126-210 (314)
189 cd05294 LDH-like_MDH_nadp A la 70.3 13 0.00027 37.8 6.8 97 325-438 2-116 (309)
190 cd00704 MDH Malate dehydrogena 70.2 13 0.00029 38.1 7.0 101 325-438 2-121 (323)
191 PLN02172 flavin-containing mon 70.2 4.2 9E-05 43.6 3.5 21 324-344 11-31 (461)
192 PRK04965 NADH:flavorubredoxin 70.0 6.6 0.00014 40.1 4.7 35 324-368 3-37 (377)
193 PRK09260 3-hydroxybutyryl-CoA 68.8 4.6 9.9E-05 40.0 3.2 32 324-367 2-33 (288)
194 TIGR03376 glycerol3P_DH glycer 68.6 5.4 0.00012 41.4 3.8 101 325-435 1-107 (342)
195 PF03446 NAD_binding_2: NAD bi 68.5 5 0.00011 36.4 3.2 32 324-367 2-33 (163)
196 PRK13512 coenzyme A disulfide 68.4 5.4 0.00012 41.8 3.9 34 324-367 2-35 (438)
197 PRK06407 ornithine cyclodeamin 68.2 8.6 0.00019 39.0 5.1 86 324-429 118-204 (301)
198 PRK06035 3-hydroxyacyl-CoA deh 68.2 5 0.00011 39.8 3.4 32 324-367 4-35 (291)
199 PRK12769 putative oxidoreducta 68.1 4.8 0.0001 44.7 3.5 33 323-367 327-359 (654)
200 PRK06475 salicylate hydroxylas 68.0 4.5 9.9E-05 41.5 3.1 21 324-344 3-23 (400)
201 PRK04176 ribulose-1,5-biphosph 67.9 3.2 7E-05 40.9 1.9 33 323-367 25-57 (257)
202 PTZ00318 NADH dehydrogenase-li 67.8 4 8.6E-05 42.7 2.7 34 323-368 10-43 (424)
203 PRK06719 precorrin-2 dehydroge 67.7 5.6 0.00012 36.5 3.4 25 321-345 11-35 (157)
204 TIGR02028 ChlP geranylgeranyl 67.7 4.5 9.7E-05 42.0 3.0 21 325-345 2-22 (398)
205 PRK07236 hypothetical protein; 67.7 5.1 0.00011 40.8 3.4 23 323-345 6-28 (386)
206 TIGR02023 BchP-ChlP geranylger 67.3 4.7 0.0001 41.3 3.1 31 325-367 2-32 (388)
207 PRK07233 hypothetical protein; 67.3 4.5 9.7E-05 41.1 2.9 31 325-367 1-31 (434)
208 PRK12810 gltD glutamate syntha 67.2 5.2 0.00011 42.6 3.4 32 324-367 144-175 (471)
209 PRK05732 2-octaprenyl-6-methox 67.2 5.2 0.00011 40.4 3.3 35 324-367 4-38 (395)
210 PLN02852 ferredoxin-NADP+ redu 66.9 7.4 0.00016 42.3 4.6 39 324-372 27-69 (491)
211 PF13450 NAD_binding_8: NAD(P) 66.9 5.6 0.00012 31.4 2.8 31 328-370 1-31 (68)
212 PRK06184 hypothetical protein; 66.7 5.3 0.00011 42.5 3.4 34 323-368 3-36 (502)
213 PF01266 DAO: FAD dependent ox 66.7 5.7 0.00012 38.5 3.4 33 325-369 1-33 (358)
214 TIGR01408 Ube1 ubiquitin-activ 66.6 6.6 0.00014 46.4 4.4 44 317-369 416-459 (1008)
215 PRK08293 3-hydroxybutyryl-CoA 66.4 5.7 0.00012 39.3 3.4 32 324-367 4-35 (287)
216 KOG0743 AAA+-type ATPase [Post 66.4 8.4 0.00018 41.7 4.8 152 116-331 192-345 (457)
217 PRK06718 precorrin-2 dehydroge 66.4 6.1 0.00013 37.7 3.4 25 321-345 8-32 (202)
218 PRK07819 3-hydroxybutyryl-CoA 66.4 5.6 0.00012 39.8 3.3 22 324-345 6-27 (286)
219 COG2072 TrkA Predicted flavopr 66.3 5.8 0.00013 42.2 3.6 34 324-368 9-42 (443)
220 PRK10886 DnaA initiator-associ 66.0 10 0.00022 36.3 4.9 23 324-347 42-64 (196)
221 PF13454 NAD_binding_9: FAD-NA 65.9 6.1 0.00013 35.6 3.2 36 327-369 1-36 (156)
222 TIGR01316 gltA glutamate synth 65.6 5.8 0.00013 42.0 3.4 32 324-367 134-165 (449)
223 PRK06847 hypothetical protein; 65.5 5.9 0.00013 39.8 3.3 21 324-344 5-25 (375)
224 PRK09564 coenzyme A disulfide 65.5 6.7 0.00014 40.7 3.8 36 324-369 1-36 (444)
225 PRK12771 putative glutamate sy 65.4 5.8 0.00013 43.1 3.5 33 323-367 137-169 (564)
226 PRK07530 3-hydroxybutyryl-CoA 65.2 6.2 0.00013 39.1 3.3 32 324-367 5-36 (292)
227 COG1252 Ndh NADH dehydrogenase 65.2 6.1 0.00013 42.1 3.5 35 323-367 3-37 (405)
228 PRK14106 murD UDP-N-acetylmura 65.1 6.4 0.00014 41.1 3.6 35 321-367 3-37 (450)
229 PRK11883 protoporphyrinogen ox 65.0 3 6.6E-05 42.8 1.2 22 324-345 1-22 (451)
230 TIGR01763 MalateDH_bact malate 64.8 7.4 0.00016 39.4 3.9 32 324-366 2-33 (305)
231 PRK14851 hypothetical protein; 64.7 6.1 0.00013 44.7 3.5 108 316-439 39-164 (679)
232 KOG2304 3-hydroxyacyl-CoA dehy 64.5 4.1 8.9E-05 40.9 1.9 32 324-367 12-43 (298)
233 TIGR03366 HpnZ_proposed putati 64.5 14 0.00031 35.9 5.7 47 305-366 107-153 (280)
234 PRK05442 malate dehydrogenase; 64.5 16 0.00035 37.6 6.3 81 324-417 5-89 (326)
235 PRK08163 salicylate hydroxylas 64.3 6.2 0.00013 40.0 3.2 21 324-344 5-25 (396)
236 PRK12439 NAD(P)H-dependent gly 63.9 7.8 0.00017 39.7 3.9 21 324-344 8-28 (341)
237 PRK07364 2-octaprenyl-6-methox 63.8 5.5 0.00012 40.7 2.8 22 324-345 19-40 (415)
238 PRK09880 L-idonate 5-dehydroge 63.3 13 0.00029 37.1 5.4 44 308-366 159-202 (343)
239 TIGR02032 GG-red-SF geranylger 63.3 6.5 0.00014 37.3 3.0 32 325-368 2-33 (295)
240 PRK12831 putative oxidoreducta 63.2 6.9 0.00015 41.7 3.5 33 323-367 140-172 (464)
241 TIGR01790 carotene-cycl lycope 63.2 6.1 0.00013 40.0 2.9 30 326-367 2-31 (388)
242 COG0644 FixC Dehydrogenases (f 62.9 7.1 0.00015 40.4 3.4 37 324-372 4-40 (396)
243 TIGR03169 Nterm_to_SelD pyridi 62.8 4.6 0.0001 40.7 2.0 36 325-369 1-36 (364)
244 PRK12770 putative glutamate sy 62.6 7.5 0.00016 39.4 3.4 32 324-367 19-50 (352)
245 PF13407 Peripla_BP_4: Peripla 62.5 26 0.00057 32.7 6.9 146 144-316 53-206 (257)
246 PRK11749 dihydropyrimidine deh 62.5 6.7 0.00015 41.3 3.2 32 324-367 141-172 (457)
247 PRK09126 hypothetical protein; 62.3 6.8 0.00015 39.6 3.1 32 324-367 4-35 (392)
248 PRK12779 putative bifunctional 62.3 6.7 0.00015 45.9 3.4 39 323-373 306-348 (944)
249 COG0565 LasT rRNA methylase [T 62.2 27 0.00059 35.0 7.1 79 324-421 5-85 (242)
250 TIGR01285 nifN nitrogenase mol 62.0 51 0.0011 35.2 9.7 70 324-417 312-382 (432)
251 PRK09853 putative selenate red 62.0 6.9 0.00015 46.3 3.4 33 323-367 539-571 (1019)
252 COG1052 LdhA Lactate dehydroge 61.8 41 0.00088 34.8 8.6 82 320-432 143-228 (324)
253 PRK00066 ldh L-lactate dehydro 61.6 13 0.00028 37.9 5.0 96 324-438 7-117 (315)
254 PRK12814 putative NADPH-depend 61.6 7.3 0.00016 43.5 3.4 33 323-367 193-225 (652)
255 PRK11728 hydroxyglutarate oxid 61.6 8.2 0.00018 39.5 3.6 35 324-368 3-37 (393)
256 PRK06270 homoserine dehydrogen 61.4 57 0.0012 33.6 9.7 104 324-432 3-116 (341)
257 TIGR00872 gnd_rel 6-phosphoglu 61.4 20 0.00043 35.9 6.2 31 325-367 2-32 (298)
258 PF00743 FMO-like: Flavin-bind 61.3 8.5 0.00018 42.2 3.8 32 324-367 2-33 (531)
259 PRK11445 putative oxidoreducta 61.2 7.8 0.00017 39.3 3.3 21 325-345 3-23 (351)
260 PF01113 DapB_N: Dihydrodipico 61.1 11 0.00024 33.0 3.8 34 325-368 2-36 (124)
261 PRK07589 ornithine cyclodeamin 61.1 24 0.00051 36.8 6.8 84 324-428 130-216 (346)
262 PRK06753 hypothetical protein; 61.0 7.5 0.00016 39.1 3.1 21 325-345 2-22 (373)
263 PRK15076 alpha-galactosidase; 60.8 9.4 0.0002 40.8 3.9 84 324-419 2-86 (431)
264 PRK07045 putative monooxygenas 60.7 7.9 0.00017 39.4 3.2 22 324-345 6-27 (388)
265 PTZ00245 ubiquitin activating 60.7 7.4 0.00016 39.6 2.9 39 316-368 22-60 (287)
266 PLN02676 polyamine oxidase 60.4 17 0.00037 39.1 5.9 36 324-370 27-62 (487)
267 PRK07608 ubiquinone biosynthes 60.3 7.5 0.00016 39.2 3.0 32 324-367 6-37 (388)
268 PRK11259 solA N-methyltryptoph 60.2 8.4 0.00018 38.6 3.3 34 324-369 4-37 (376)
269 TIGR03315 Se_ygfK putative sel 60.2 7.6 0.00016 45.9 3.4 33 323-367 537-569 (1012)
270 PLN02545 3-hydroxybutyryl-CoA 59.4 9.1 0.0002 38.0 3.3 32 324-367 5-36 (295)
271 TIGR01377 soxA_mon sarcosine o 59.3 8.7 0.00019 38.6 3.2 34 325-370 2-35 (380)
272 PRK12778 putative bifunctional 59.2 8.8 0.00019 43.4 3.6 33 323-367 431-463 (752)
273 PRK00141 murD UDP-N-acetylmura 59.1 8.8 0.00019 41.0 3.4 25 321-345 13-37 (473)
274 PRK06130 3-hydroxybutyryl-CoA 59.0 9.2 0.0002 38.1 3.3 31 324-366 5-35 (311)
275 PLN02268 probable polyamine ox 58.5 8.6 0.00019 39.8 3.1 21 325-345 2-22 (435)
276 PRK07340 ornithine cyclodeamin 58.2 42 0.00092 34.0 7.9 79 324-424 126-205 (304)
277 PRK07251 pyridine nucleotide-d 58.0 9.6 0.00021 39.8 3.4 33 324-368 4-36 (438)
278 PRK08773 2-octaprenyl-3-methyl 57.8 7.8 0.00017 39.5 2.6 33 324-368 7-39 (392)
279 PRK08849 2-octaprenyl-3-methyl 57.6 9.5 0.00021 38.9 3.2 32 324-367 4-35 (384)
280 TIGR00292 thiazole biosynthesi 57.6 6.3 0.00014 38.9 1.9 34 324-369 22-55 (254)
281 PRK14989 nitrite reductase sub 57.5 14 0.00031 42.7 5.0 41 323-371 3-43 (847)
282 PRK01438 murD UDP-N-acetylmura 57.4 12 0.00026 39.7 4.0 22 323-344 16-37 (480)
283 PRK07877 hypothetical protein; 57.4 12 0.00027 42.7 4.3 105 317-439 104-225 (722)
284 TIGR01317 GOGAT_sm_gam glutama 57.3 10 0.00022 40.7 3.5 32 324-367 144-175 (485)
285 TIGR00031 UDP-GALP_mutase UDP- 57.2 9.7 0.00021 40.0 3.2 31 325-367 3-33 (377)
286 cd01493 APPBP1_RUB Ubiquitin a 57.2 8.6 0.00019 41.1 2.9 34 324-368 21-54 (425)
287 PRK12266 glpD glycerol-3-phosp 57.1 9.2 0.0002 41.2 3.1 34 324-369 7-40 (508)
288 cd01974 Nitrogenase_MoFe_beta 56.9 35 0.00075 36.2 7.4 26 316-344 299-324 (435)
289 TIGR01984 UbiH 2-polyprenyl-6- 56.9 8.8 0.00019 38.6 2.8 20 326-345 2-21 (382)
290 PF01946 Thi4: Thi4 family; PD 56.9 11 0.00025 37.3 3.5 36 324-371 18-53 (230)
291 PRK06834 hypothetical protein; 56.9 10 0.00022 40.7 3.5 35 322-368 2-36 (488)
292 TIGR02279 PaaC-3OHAcCoADH 3-hy 56.6 9.8 0.00021 41.4 3.3 32 324-367 6-37 (503)
293 PRK06522 2-dehydropantoate 2-r 56.6 10 0.00022 37.1 3.1 31 325-367 2-32 (304)
294 cd01336 MDH_cytoplasmic_cytoso 56.5 54 0.0012 33.7 8.5 98 324-434 3-118 (325)
295 PLN00093 geranylgeranyl diphos 56.5 9.5 0.00021 40.7 3.1 21 324-344 40-60 (450)
296 PRK05714 2-octaprenyl-3-methyl 56.4 7.9 0.00017 39.6 2.4 32 324-367 3-34 (405)
297 PRK06199 ornithine cyclodeamin 56.3 30 0.00065 36.4 6.7 88 324-428 156-250 (379)
298 cd01337 MDH_glyoxysomal_mitoch 56.3 34 0.00074 35.1 6.9 96 325-438 2-112 (310)
299 PRK07588 hypothetical protein; 56.3 9.9 0.00021 38.7 3.1 20 325-344 2-21 (391)
300 PF13241 NAD_binding_7: Putati 56.2 6.1 0.00013 33.4 1.3 36 321-368 5-40 (103)
301 PF01408 GFO_IDH_MocA: Oxidore 56.1 3.7 8E-05 34.5 -0.0 89 325-438 2-95 (120)
302 COG0039 Mdh Malate/lactate deh 56.1 22 0.00047 36.8 5.5 99 324-439 1-114 (313)
303 PRK08618 ornithine cyclodeamin 56.1 32 0.0007 35.0 6.7 84 324-428 128-212 (325)
304 PRK06416 dihydrolipoamide dehy 56.1 9.7 0.00021 40.0 3.0 33 324-368 5-37 (462)
305 PRK01747 mnmC bifunctional tRN 56.0 11 0.00023 42.0 3.5 35 324-370 261-295 (662)
306 cd01833 XynB_like SGNH_hydrola 56.0 25 0.00055 30.7 5.3 67 189-270 18-84 (157)
307 TIGR03143 AhpF_homolog putativ 55.9 9.6 0.00021 41.6 3.1 32 325-368 6-37 (555)
308 COG0476 ThiF Dinucleotide-util 55.6 9.4 0.0002 37.2 2.7 38 316-367 26-63 (254)
309 cd01490 Ube1_repeat2 Ubiquitin 55.6 12 0.00025 40.5 3.5 38 325-368 1-38 (435)
310 PRK12809 putative oxidoreducta 55.6 11 0.00024 41.9 3.5 34 323-368 310-343 (639)
311 PRK10157 putative oxidoreducta 55.3 10 0.00022 39.9 3.0 32 324-367 6-37 (428)
312 TIGR01318 gltD_gamma_fam gluta 55.3 12 0.00025 40.0 3.6 32 324-367 142-173 (467)
313 PRK11730 fadB multifunctional 55.1 9.9 0.00021 43.1 3.1 32 324-367 314-345 (715)
314 TIGR01988 Ubi-OHases Ubiquinon 55.1 9.9 0.00022 38.0 2.8 31 326-368 2-32 (385)
315 PF02558 ApbA: Ketopantoate re 55.0 12 0.00026 32.8 3.1 31 326-368 1-31 (151)
316 TIGR01350 lipoamide_DH dihydro 54.8 11 0.00024 39.4 3.2 30 325-366 3-32 (461)
317 PLN02463 lycopene beta cyclase 54.7 10 0.00022 40.6 3.0 21 324-344 29-49 (447)
318 PRK08013 oxidoreductase; Provi 54.7 11 0.00024 38.7 3.2 32 324-367 4-35 (400)
319 PRK00711 D-amino acid dehydrog 54.7 11 0.00025 38.4 3.3 31 325-367 2-32 (416)
320 PF12831 FAD_oxidored: FAD dep 54.7 10 0.00022 39.8 3.0 33 326-370 2-34 (428)
321 TIGR01789 lycopene_cycl lycope 54.5 18 0.0004 37.3 4.7 35 326-370 2-36 (370)
322 PRK09599 6-phosphogluconate de 54.4 33 0.00072 34.2 6.4 31 325-367 2-32 (301)
323 PTZ00188 adrenodoxin reductase 54.3 15 0.00032 40.4 4.1 39 324-373 40-82 (506)
324 PRK08243 4-hydroxybenzoate 3-m 54.2 12 0.00026 38.3 3.3 21 324-344 3-23 (392)
325 PF14606 Lipase_GDSL_3: GDSL-l 54.0 13 0.00028 35.5 3.2 56 203-278 51-107 (178)
326 TIGR03364 HpnW_proposed FAD de 54.0 11 0.00024 37.8 3.0 32 325-368 2-33 (365)
327 PRK08244 hypothetical protein; 53.8 11 0.00025 39.9 3.2 32 324-367 3-34 (493)
328 PRK04690 murD UDP-N-acetylmura 53.7 12 0.00026 40.0 3.3 23 323-345 8-30 (468)
329 KOG2018 Predicted dinucleotide 53.6 12 0.00027 39.2 3.2 38 321-369 72-109 (430)
330 PRK12775 putative trifunctiona 53.6 14 0.0003 43.7 4.0 39 323-373 430-472 (1006)
331 PRK12490 6-phosphogluconate de 53.6 28 0.0006 34.8 5.7 31 325-367 2-32 (299)
332 COG0578 GlpA Glycerol-3-phosph 53.5 21 0.00046 39.5 5.2 52 324-387 13-67 (532)
333 COG1179 Dinucleotide-utilizing 53.5 11 0.00023 38.2 2.6 45 317-372 24-68 (263)
334 PRK07538 hypothetical protein; 53.4 12 0.00025 38.7 3.1 20 325-344 2-21 (413)
335 PRK06823 ornithine cyclodeamin 53.4 38 0.00082 34.7 6.7 84 324-428 129-213 (315)
336 PRK11101 glpA sn-glycerol-3-ph 53.3 12 0.00026 40.8 3.3 33 324-368 7-39 (546)
337 COG1063 Tdh Threonine dehydrog 53.2 19 0.0004 37.0 4.5 59 294-366 143-201 (350)
338 PRK06185 hypothetical protein; 53.2 12 0.00025 38.3 3.0 33 324-368 7-39 (407)
339 PRK08010 pyridine nucleotide-d 53.1 12 0.00026 39.1 3.2 32 324-367 4-35 (441)
340 COG0240 GpsA Glycerol-3-phosph 53.0 24 0.00053 36.8 5.3 91 324-434 2-95 (329)
341 PRK13369 glycerol-3-phosphate 52.9 11 0.00024 40.3 3.0 33 324-368 7-39 (502)
342 PRK06912 acoL dihydrolipoamide 52.9 12 0.00026 39.5 3.1 31 325-367 2-32 (458)
343 PRK07494 2-octaprenyl-6-methox 52.8 12 0.00026 38.0 3.0 33 324-368 8-40 (388)
344 COG3349 Uncharacterized conser 52.8 10 0.00022 41.5 2.6 23 324-346 1-23 (485)
345 PRK10262 thioredoxin reductase 52.7 13 0.00027 37.0 3.1 22 324-345 7-28 (321)
346 PRK02472 murD UDP-N-acetylmura 52.4 13 0.00028 38.8 3.3 24 322-345 4-27 (447)
347 TIGR02053 MerA mercuric reduct 52.4 12 0.00027 39.2 3.2 30 326-367 3-32 (463)
348 PRK08268 3-hydroxy-acyl-CoA de 52.3 13 0.00028 40.5 3.3 31 324-366 8-38 (507)
349 PRK08850 2-octaprenyl-6-methox 52.2 13 0.00028 38.2 3.2 32 324-367 5-36 (405)
350 COG1486 CelF Alpha-galactosida 52.2 15 0.00032 39.8 3.6 79 322-413 2-82 (442)
351 PRK07333 2-octaprenyl-6-methox 51.9 11 0.00024 38.2 2.7 21 325-345 3-23 (403)
352 cd05188 MDR Medium chain reduc 51.8 30 0.00064 32.1 5.3 46 307-367 122-167 (271)
353 PRK14852 hypothetical protein; 51.7 12 0.00026 44.2 3.1 40 316-369 328-367 (989)
354 PRK13984 putative oxidoreducta 51.6 14 0.00031 40.5 3.5 32 324-367 284-315 (604)
355 PRK07208 hypothetical protein; 51.5 14 0.0003 38.8 3.3 23 323-345 4-26 (479)
356 TIGR03219 salicylate_mono sali 51.3 13 0.00029 38.2 3.1 21 325-345 2-22 (414)
357 PF03807 F420_oxidored: NADP o 51.3 21 0.00045 28.9 3.7 80 325-430 1-81 (96)
358 TIGR01283 nifE nitrogenase mol 51.3 33 0.00072 36.6 6.2 84 314-416 320-403 (456)
359 PF03486 HI0933_like: HI0933-l 51.3 14 0.0003 39.3 3.2 31 325-367 2-32 (409)
360 PF02423 OCD_Mu_crystall: Orni 50.6 38 0.00082 34.5 6.2 85 324-429 129-216 (313)
361 PRK05808 3-hydroxybutyryl-CoA 50.6 14 0.00031 36.3 3.1 31 324-366 4-34 (282)
362 COG0665 DadA Glycine/D-amino a 50.6 17 0.00036 36.5 3.6 36 324-371 5-40 (387)
363 PRK08020 ubiF 2-octaprenyl-3-m 50.5 13 0.00027 37.8 2.8 32 324-367 6-37 (391)
364 COG3380 Predicted NAD/FAD-depe 50.5 16 0.00034 37.8 3.3 34 325-370 3-36 (331)
365 PRK05976 dihydrolipoamide dehy 50.5 14 0.0003 39.1 3.2 32 324-367 5-36 (472)
366 PRK05868 hypothetical protein; 50.4 14 0.0003 38.0 3.0 21 324-344 2-22 (372)
367 PRK09897 hypothetical protein; 50.3 16 0.00035 40.2 3.7 35 324-368 2-36 (534)
368 COG1748 LYS9 Saccharopine dehy 50.2 19 0.0004 38.4 4.0 88 324-432 2-90 (389)
369 PRK14478 nitrogenase molybdenu 50.2 80 0.0017 34.1 8.9 38 308-353 312-349 (475)
370 PRK06292 dihydrolipoamide dehy 50.2 16 0.00034 38.4 3.4 32 324-367 4-35 (460)
371 TIGR02371 ala_DH_arch alanine 50.1 42 0.0009 34.3 6.4 84 324-428 129-213 (325)
372 PLN02927 antheraxanthin epoxid 50.1 12 0.00026 42.4 2.7 32 324-367 82-113 (668)
373 PRK06567 putative bifunctional 49.9 14 0.00031 43.8 3.3 33 323-367 383-415 (1028)
374 PRK01390 murD UDP-N-acetylmura 49.8 16 0.00035 38.5 3.6 25 321-345 7-31 (460)
375 TIGR01408 Ube1 ubiquitin-activ 49.8 13 0.00029 44.0 3.1 40 316-369 20-59 (1008)
376 PRK04308 murD UDP-N-acetylmura 49.7 17 0.00036 38.2 3.6 23 323-345 5-27 (445)
377 PF04820 Trp_halogenase: Trypt 49.5 16 0.00035 39.0 3.5 36 325-369 1-36 (454)
378 TIGR01373 soxB sarcosine oxida 49.3 19 0.00041 36.9 3.9 36 324-369 31-66 (407)
379 TIGR03846 sulfopy_beta sulfopy 49.3 1.4E+02 0.0029 28.0 9.3 80 253-344 2-81 (181)
380 TIGR03736 PRTRC_ThiF PRTRC sys 49.3 20 0.00042 35.8 3.8 45 324-371 12-58 (244)
381 PLN02568 polyamine oxidase 49.2 19 0.0004 39.6 4.0 22 324-345 6-27 (539)
382 PRK08132 FAD-dependent oxidore 49.2 14 0.0003 39.9 2.9 21 324-344 24-44 (547)
383 cd01967 Nitrogenase_MoFe_alpha 49.1 1.2E+02 0.0026 31.4 9.8 133 149-343 167-306 (406)
384 PRK10015 oxidoreductase; Provi 49.0 14 0.00031 38.9 3.0 33 324-368 6-38 (429)
385 PLN02985 squalene monooxygenas 49.0 17 0.00037 39.5 3.6 32 324-367 44-75 (514)
386 TIGR01772 MDH_euk_gproteo mala 48.9 42 0.00091 34.4 6.2 95 325-438 1-111 (312)
387 TIGR02360 pbenz_hydroxyl 4-hyd 48.1 17 0.00037 37.4 3.3 21 324-344 3-23 (390)
388 PF03435 Saccharop_dh: Sacchar 48.0 8.2 0.00018 39.6 1.0 88 326-432 1-89 (386)
389 TIGR03169 Nterm_to_SelD pyridi 47.9 38 0.00082 34.1 5.7 41 324-370 146-186 (364)
390 PRK14694 putative mercuric red 47.8 18 0.00039 38.3 3.5 32 324-367 7-38 (468)
391 PTZ00142 6-phosphogluconate de 47.7 22 0.00049 38.5 4.3 88 324-433 2-90 (470)
392 PRK05249 soluble pyridine nucl 47.7 16 0.00036 38.2 3.2 33 324-368 6-38 (461)
393 PRK13748 putative mercuric red 47.3 16 0.00034 39.4 3.0 32 324-367 99-130 (561)
394 PF00732 GMC_oxred_N: GMC oxid 47.3 15 0.00032 35.7 2.6 36 326-372 3-38 (296)
395 TIGR02437 FadB fatty oxidation 47.1 16 0.00034 41.5 3.1 31 324-366 314-344 (714)
396 PRK02705 murD UDP-N-acetylmura 46.8 16 0.00036 38.2 3.0 21 325-345 2-22 (459)
397 PRK01710 murD UDP-N-acetylmura 46.7 18 0.00038 38.4 3.2 22 324-345 15-36 (458)
398 COG1086 Predicted nucleoside-d 46.7 19 0.00041 40.2 3.5 149 242-417 157-334 (588)
399 TIGR01759 MalateDH-SF1 malate 46.6 49 0.0011 34.1 6.3 99 324-435 4-120 (323)
400 PF12227 DUF3603: Protein of u 46.4 9.4 0.0002 37.3 1.0 26 174-202 51-76 (214)
401 COG0499 SAM1 S-adenosylhomocys 46.4 36 0.00078 36.4 5.3 104 294-433 186-289 (420)
402 COG2423 Predicted ornithine cy 46.3 60 0.0013 33.8 6.9 98 304-428 116-216 (330)
403 PRK05479 ketol-acid reductoiso 46.3 22 0.00047 37.0 3.8 30 316-345 10-39 (330)
404 PRK12921 2-dehydropantoate 2-r 46.2 18 0.00039 35.5 3.0 30 325-366 2-31 (305)
405 KOG1495 Lactate dehydrogenase 46.2 26 0.00057 36.1 4.2 35 323-367 20-54 (332)
406 KOG3851 Sulfide:quinone oxidor 46.1 15 0.00032 38.9 2.4 23 324-346 40-62 (446)
407 COG0654 UbiH 2-polyprenyl-6-me 46.1 17 0.00038 37.3 3.0 32 324-367 3-34 (387)
408 TIGR00562 proto_IX_ox protopor 46.0 20 0.00044 37.2 3.5 22 324-345 3-24 (462)
409 PRK06126 hypothetical protein; 45.9 20 0.00043 38.6 3.5 33 324-368 8-40 (545)
410 PRK07190 hypothetical protein; 45.9 18 0.00039 38.9 3.2 33 324-368 6-38 (487)
411 PRK08229 2-dehydropantoate 2-r 45.7 19 0.00041 36.2 3.1 32 324-367 3-34 (341)
412 KOG0024 Sorbitol dehydrogenase 45.5 26 0.00057 36.8 4.1 48 304-366 155-202 (354)
413 PRK14618 NAD(P)H-dependent gly 45.5 20 0.00043 36.1 3.2 22 324-345 5-26 (328)
414 TIGR01214 rmlD dTDP-4-dehydror 45.4 30 0.00066 33.1 4.4 59 325-418 1-60 (287)
415 PRK06617 2-octaprenyl-6-methox 45.3 16 0.00035 37.2 2.6 32 324-367 2-33 (374)
416 PRK00311 panB 3-methyl-2-oxobu 45.3 68 0.0015 32.4 6.9 75 172-272 36-115 (264)
417 PRK13403 ketol-acid reductoiso 45.2 23 0.0005 37.1 3.7 40 316-367 9-48 (335)
418 PRK08294 phenol 2-monooxygenas 44.9 17 0.00037 40.6 2.9 33 324-367 33-65 (634)
419 KOG1399 Flavin-containing mono 44.8 19 0.0004 38.9 3.1 23 323-345 6-28 (448)
420 PRK06392 homoserine dehydrogen 44.8 1E+02 0.0022 31.9 8.3 86 325-417 2-90 (326)
421 TIGR02733 desat_CrtD C-3',4' d 44.6 22 0.00047 37.7 3.5 34 324-369 2-35 (492)
422 TIGR01421 gluta_reduc_1 glutat 44.5 18 0.00039 38.2 2.9 32 324-367 3-34 (450)
423 cd08237 ribitol-5-phosphate_DH 44.4 48 0.001 33.3 5.8 21 324-344 165-185 (341)
424 TIGR03693 ocin_ThiF_like putat 44.4 63 0.0014 36.6 7.1 148 252-431 71-227 (637)
425 PRK06115 dihydrolipoamide dehy 44.2 22 0.00048 37.7 3.5 32 324-367 4-35 (466)
426 cd08239 THR_DH_like L-threonin 43.6 45 0.00098 32.9 5.4 34 305-342 150-183 (339)
427 PRK02006 murD UDP-N-acetylmura 43.6 22 0.00048 38.0 3.4 25 321-345 5-29 (498)
428 PRK12416 protoporphyrinogen ox 43.5 20 0.00044 37.5 3.1 22 324-345 2-23 (463)
429 PRK06183 mhpA 3-(3-hydroxyphen 43.4 21 0.00045 38.5 3.2 32 324-367 11-42 (538)
430 KOG2711 Glycerol-3-phosphate d 43.4 95 0.0021 33.0 7.8 101 323-435 21-130 (372)
431 cd08231 MDR_TM0436_like Hypoth 43.4 46 0.001 33.2 5.5 36 304-342 162-197 (361)
432 cd01972 Nitrogenase_VnfE_like 43.3 1.7E+02 0.0036 31.0 9.9 156 129-345 136-315 (426)
433 PRK12570 N-acetylmuramic acid- 43.2 69 0.0015 32.6 6.7 13 324-336 59-71 (296)
434 TIGR01286 nifK nitrogenase mol 43.1 1.8E+02 0.0039 32.0 10.3 21 324-344 364-384 (515)
435 PRK00094 gpsA NAD(P)H-dependen 43.0 23 0.0005 35.0 3.2 31 325-367 3-33 (325)
436 PRK14620 NAD(P)H-dependent gly 42.9 23 0.0005 35.6 3.2 32 325-368 2-33 (326)
437 PRK06116 glutathione reductase 42.7 21 0.00046 37.3 3.1 31 325-367 6-36 (450)
438 PLN02735 carbamoyl-phosphate s 42.7 29 0.00063 41.5 4.5 80 324-420 24-111 (1102)
439 TIGR02441 fa_ox_alpha_mit fatt 42.7 19 0.00042 41.0 3.0 22 324-345 336-357 (737)
440 cd01838 Isoamyl_acetate_hydrol 42.6 50 0.0011 29.5 5.1 68 189-266 38-108 (199)
441 cd03466 Nitrogenase_NifN_2 Nit 42.6 58 0.0013 34.5 6.3 79 322-417 299-381 (429)
442 PRK07121 hypothetical protein; 42.1 23 0.0005 37.7 3.3 34 324-369 21-54 (492)
443 TIGR01813 flavo_cyto_c flavocy 42.0 24 0.00053 36.7 3.4 34 326-370 2-35 (439)
444 PF02056 Glyco_hydro_4: Family 41.8 19 0.00042 34.4 2.4 78 325-415 1-80 (183)
445 PF02254 TrkA_N: TrkA-N domain 41.8 37 0.00081 28.3 3.9 30 326-367 1-30 (116)
446 PRK07818 dihydrolipoamide dehy 41.2 22 0.00048 37.5 3.0 32 324-367 5-36 (466)
447 PRK06467 dihydrolipoamide dehy 40.7 23 0.00049 37.7 2.9 32 324-367 5-36 (471)
448 COG1250 FadB 3-hydroxyacyl-CoA 40.7 22 0.00048 36.7 2.7 32 324-367 4-35 (307)
449 TIGR01424 gluta_reduc_2 glutat 40.7 23 0.0005 37.2 3.0 31 325-367 4-34 (446)
450 PRK10309 galactitol-1-phosphat 40.7 55 0.0012 32.6 5.6 19 324-342 162-180 (347)
451 PRK06370 mercuric reductase; V 40.7 23 0.00051 37.3 3.0 32 324-367 6-37 (463)
452 cd01965 Nitrogenase_MoFe_beta_ 40.2 29 0.00063 36.6 3.6 24 322-345 298-321 (428)
453 PRK06545 prephenate dehydrogen 40.2 65 0.0014 33.2 6.1 22 324-345 1-22 (359)
454 TIGR00137 gid_trmFO tRNA:m(5)U 40.0 24 0.00051 38.1 2.9 31 325-367 2-32 (433)
455 TIGR02731 phytoene_desat phyto 40.0 24 0.00052 36.8 2.9 21 325-345 1-21 (453)
456 COG0569 TrkA K+ transport syst 39.9 26 0.00057 33.9 3.0 85 325-431 2-87 (225)
457 PRK11154 fadJ multifunctional 39.9 25 0.00054 39.9 3.2 32 324-366 310-341 (708)
458 PRK12815 carB carbamoyl phosph 39.9 39 0.00085 40.2 5.0 75 324-415 8-89 (1068)
459 COG1148 HdrA Heterodisulfide r 39.6 32 0.00068 38.2 3.8 39 324-374 125-163 (622)
460 COG2072 TrkA Predicted flavopr 39.5 25 0.00055 37.5 3.1 41 319-371 171-211 (443)
461 TIGR02818 adh_III_F_hyde S-(hy 39.4 56 0.0012 33.2 5.4 18 324-341 187-204 (368)
462 cd05298 GH4_GlvA_pagL_like Gly 39.1 37 0.00079 36.5 4.2 76 324-413 1-79 (437)
463 COG2084 MmsB 3-hydroxyisobutyr 39.1 48 0.001 33.9 4.8 22 324-345 1-22 (286)
464 cd01339 LDH-like_MDH L-lactate 39.1 24 0.00052 35.3 2.7 31 326-367 1-31 (300)
465 PRK07845 flavoprotein disulfid 39.1 28 0.0006 37.0 3.3 33 324-368 2-34 (466)
466 COG0562 Glf UDP-galactopyranos 39.0 27 0.00059 36.8 3.1 34 325-370 3-36 (374)
467 cd00300 LDH_like L-lactate deh 38.9 74 0.0016 32.1 6.1 93 326-436 1-108 (300)
468 TIGR00873 gnd 6-phosphoglucona 38.8 64 0.0014 35.0 6.0 86 325-433 1-87 (467)
469 PLN02172 flavin-containing mon 38.8 30 0.00065 37.1 3.5 22 324-345 205-226 (461)
470 PLN02464 glycerol-3-phosphate 38.7 25 0.00055 39.2 3.0 34 324-369 72-105 (627)
471 cd05292 LDH_2 A subgroup of L- 37.8 34 0.00073 34.6 3.5 33 325-367 2-34 (308)
472 PRK00421 murC UDP-N-acetylmura 37.7 26 0.00056 37.1 2.8 23 323-345 7-30 (461)
473 PRK14806 bifunctional cyclohex 37.7 61 0.0013 36.4 5.9 34 324-367 4-37 (735)
474 TIGR01989 COQ6 Ubiquinone bios 37.6 24 0.00052 36.9 2.6 35 325-367 2-36 (437)
475 PLN02661 Putative thiazole syn 37.6 33 0.00071 36.2 3.5 35 324-369 93-127 (357)
476 PRK14727 putative mercuric red 37.5 28 0.0006 37.1 3.0 32 324-367 17-48 (479)
477 PRK05335 tRNA (uracil-5-)-meth 37.4 30 0.00066 37.4 3.3 34 324-369 3-36 (436)
478 PTZ00367 squalene epoxidase; P 37.4 37 0.00081 37.6 4.0 32 324-367 34-65 (567)
479 cd05006 SIS_GmhA Phosphoheptos 37.3 1E+02 0.0023 28.1 6.4 23 324-347 34-56 (177)
480 PTZ00058 glutathione reductase 37.3 29 0.00064 38.3 3.2 32 324-367 49-80 (561)
481 TIGR03329 Phn_aa_oxid putative 37.3 33 0.00072 36.2 3.5 35 324-368 25-59 (460)
482 TIGR01202 bchC 2-desacetyl-2-h 37.2 73 0.0016 31.5 5.8 19 324-342 146-164 (308)
483 PF13963 Transpos_assoc: Trans 37.2 39 0.00085 27.6 3.2 31 234-265 4-34 (77)
484 TIGR01372 soxA sarcosine oxida 37.1 27 0.00059 41.0 3.1 32 324-367 164-195 (985)
485 TIGR00441 gmhA phosphoheptose 37.0 67 0.0015 29.0 5.0 22 324-346 12-33 (154)
486 TIGR01320 mal_quin_oxido malat 36.9 32 0.0007 37.1 3.4 33 325-367 2-34 (483)
487 PRK07531 bifunctional 3-hydrox 36.8 30 0.00065 37.4 3.2 31 324-366 5-35 (495)
488 PRK02106 choline dehydrogenase 36.8 27 0.00058 38.0 2.8 20 325-344 7-26 (560)
489 PLN02697 lycopene epsilon cycl 36.8 26 0.00057 38.5 2.7 21 324-344 109-129 (529)
490 PLN02740 Alcohol dehydrogenase 36.8 43 0.00093 34.2 4.1 32 324-366 200-231 (381)
491 TIGR01832 kduD 2-deoxy-D-gluco 36.8 37 0.00079 31.7 3.4 34 322-367 4-38 (248)
492 cd08277 liver_alcohol_DH_like 36.7 66 0.0014 32.5 5.5 32 324-366 186-217 (365)
493 PRK08274 tricarballylate dehyd 36.5 33 0.00071 36.1 3.3 33 324-368 5-37 (466)
494 TIGR01279 DPOR_bchN light-inde 36.5 44 0.00095 35.2 4.2 35 308-345 262-296 (407)
495 TIGR03201 dearomat_had 6-hydro 36.5 65 0.0014 32.3 5.3 21 324-344 168-188 (349)
496 TIGR02622 CDP_4_6_dhtase CDP-g 36.0 39 0.00085 33.9 3.7 81 322-418 3-85 (349)
497 PF13738 Pyr_redox_3: Pyridine 36.0 28 0.0006 31.6 2.4 34 322-367 166-199 (203)
498 TIGR02440 FadJ fatty oxidation 35.8 33 0.00071 38.9 3.4 33 324-367 305-337 (699)
499 COG0673 MviM Predicted dehydro 35.6 79 0.0017 31.3 5.7 40 397-438 56-100 (342)
500 cd02014 TPP_POX Thiamine pyrop 35.6 3.5E+02 0.0076 24.8 10.5 103 252-369 4-108 (178)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.7e-160 Score=1235.57 Aligned_cols=395 Identities=54% Similarity=0.908 Sum_probs=388.3
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHHHH
Q 013638 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (439)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~ 104 (439)
++..+++|+++|+||++|||+|||.+||++|+|||||||.|.|+|+|+.||+.+|++++ ++|+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceee
Q 013638 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (439)
Q Consensus 105 L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rIL 184 (439)
||+|||+|||+++++|++|+||||||||||+|||+||++||+|+|||||++|+|||.++|+|||.++|++||||||||||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-
Q 013638 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (439)
Q Consensus 185 GLGDlG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~- 263 (439)
||||+|++|||||+||++||||||||+|++|||||||||||||+||+||+|+|+|++|++|+|||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHH
Q 013638 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (439)
Q Consensus 264 P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~ 343 (439)
|+++||||||+++|||++|+|||+++|||||||||||||+|||||+|+|++|++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcCCChhhhcCeEEEEecccccccCCC-CCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCC
Q 013638 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (439)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~-~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~F 422 (439)
.+|+ ++|+|+|||+++|||||++|||+.+|+ +++++|++||++.++| ++|+|||+.+|||||||+|++||+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 689999999999999999999999996 9999999999998654 5899999999999999999999999
Q ss_pred CHHHHHHHhccCCCCCC
Q 013638 423 NEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 423 teevV~~Ma~~~~~pi~ 439 (439)
||||||+|++++++|||
T Consensus 404 teevl~~Ma~~~erPiI 420 (582)
T KOG1257|consen 404 TEEVLRAMAKSNERPII 420 (582)
T ss_pred CHHHHHHHHhcCCCceE
Confidence 99999999999999997
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-159 Score=1251.49 Aligned_cols=403 Identities=47% Similarity=0.824 Sum_probs=390.9
Q ss_pred CCceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHH
Q 013638 23 PGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRIL 102 (439)
Q Consensus 23 ~~~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L 102 (439)
.....+..+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||
T Consensus 8 ~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L 77 (563)
T PRK13529 8 KRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHIYL 77 (563)
T ss_pred CcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHHHH
Confidence 4455667899999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHhhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCce
Q 013638 103 NRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSR 182 (439)
Q Consensus 103 ~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~r 182 (439)
++||+|||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|.++|+|||.++|++||||||||
T Consensus 78 ~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~r 157 (563)
T PRK13529 78 RNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGER 157 (563)
T ss_pred HHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHh
Q 013638 183 ILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHAR 262 (439)
Q Consensus 183 ILGLGDlG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~ 262 (439)
||||||||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||||++|++||+|+||||+||+++
T Consensus 158 ILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~ 237 (563)
T PRK13529 158 ILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRR 237 (563)
T ss_pred eeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHH
Q 013638 263 WPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMA 342 (439)
Q Consensus 263 ~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li 342 (439)
||+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||++|
T Consensus 238 ~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d---~riv~~GAGsAgiGia~ll 314 (563)
T PRK13529 238 FPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSD---QRIVFLGAGSAGCGIADQI 314 (563)
T ss_pred CCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCC---CCCCCHHHHhccCCCcEEEeccCCC
Q 013638 343 VQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL---REGASLLEVVRKVKPHVLLGLSGVG 419 (439)
Q Consensus 343 ~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~---~~~~sL~eaV~~vkPtvLIG~S~~~ 419 (439)
+++|+ ++|+|+|||+++|||||++|||+++|++|+++|++|||+.++...| ....+|+|||+++|||||||+|+++
T Consensus 315 ~~~~~-~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~ 393 (563)
T PRK13529 315 VAAMV-REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQP 393 (563)
T ss_pred HHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCC
Confidence 99999 6899999999999999999999999999999999999986552222 2347899999999999999999999
Q ss_pred CCCCHHHHHHHhccCCCCCC
Q 013638 420 GVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 420 G~FteevV~~Ma~~~~~pi~ 439 (439)
|+||||||++|+++|++|||
T Consensus 394 g~Ft~evv~~Ma~~~erPII 413 (563)
T PRK13529 394 GAFTEEIVKEMAAHCERPII 413 (563)
T ss_pred CCCCHHHHHHHHhcCCCCEE
Confidence 99999999999999999997
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=5.6e-158 Score=1241.28 Aligned_cols=401 Identities=50% Similarity=0.854 Sum_probs=387.7
Q ss_pred CceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHHH
Q 013638 24 GPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILN 103 (439)
Q Consensus 24 ~~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~ 103 (439)
....+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||+
T Consensus 11 ~~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~~L~ 80 (559)
T PTZ00317 11 EKVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQFLR 80 (559)
T ss_pred cccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHHHHH
Confidence 334566899999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HhhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCcee
Q 013638 104 RLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRI 183 (439)
Q Consensus 104 ~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rI 183 (439)
+||++||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++|||||||||
T Consensus 81 ~L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rI 160 (559)
T PTZ00317 81 NIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRI 160 (559)
T ss_pred HHhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC
Q 013638 184 LGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW 263 (439)
Q Consensus 184 LGLGDlG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~ 263 (439)
|||||+|+|||||||||++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+|+||||+||+++|
T Consensus 161 LGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~ 240 (559)
T PTZ00317 161 LGLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW 240 (559)
T ss_pred cccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHH
Q 013638 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (439)
Q Consensus 264 P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~ 343 (439)
|+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+
T Consensus 241 P~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d---~riv~~GAGsAgiGia~ll~ 317 (559)
T PTZ00317 241 PNAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEE---QRIVFFGAGSAAIGVANNIA 317 (559)
T ss_pred CCeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcCCChhhhcCeEEEEecccccccCCCC-CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCC
Q 013638 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (439)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~-L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~F 422 (439)
++|+ ++|+|+|||++||||||++|||+++|++ |+++|++|||+.++.+. ....+|+|||+.+|||||||+|++||+|
T Consensus 318 ~~m~-~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~-~~~~~L~e~v~~~KPtvLIG~S~~~g~F 395 (559)
T PTZ00317 318 DLAA-EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAED-SSLKTLEDVVRFVKPTALLGLSGVGGVF 395 (559)
T ss_pred HHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccc-ccCCCHHHHHhccCCCEEEEecCCCCCC
Confidence 9999 6899999999999999999999999965 99999999997532110 1257999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCCC
Q 013638 423 NEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 423 teevV~~Ma~~~~~pi~ 439 (439)
|||||++|+++|++|||
T Consensus 396 t~evv~~Ma~~~~rPII 412 (559)
T PTZ00317 396 TEEVVKTMASNVERPII 412 (559)
T ss_pred CHHHHHHHHhcCCCCEE
Confidence 99999999999999997
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=8.7e-156 Score=1228.94 Aligned_cols=392 Identities=59% Similarity=0.983 Sum_probs=384.3
Q ss_pred ccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCccccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHHHHhhcc
Q 013638 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (439)
Q Consensus 29 ~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~L~~~ 108 (439)
..+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCC
Q 013638 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (439)
Q Consensus 109 Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGD 188 (439)
||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+++++++|||.++|++||||||||||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CceE
Q 013638 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (439)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~-P~~~ 267 (439)
+|++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+|||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q 013638 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (439)
Q Consensus 268 IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~ 347 (439)
||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d---~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD---QRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh---ceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHcCCChhhhcCeEEEEecccccccCCCC-CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHH
Q 013638 348 RMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (439)
Q Consensus 348 ~~~Gls~eeA~~~i~lvDs~GLl~~~r~~-L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~Fteev 426 (439)
+++|+|+|||+++|||||++|||+++|++ |+++|++||++.+ +..+|+|||+++|||||||+|+++|+|||||
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 419 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc------cCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 44699999999999999999999999976 9999999999853 3578999999999999999999999999999
Q ss_pred HHHHhccCCCCCC
Q 013638 427 KTYFLCFIPCFIF 439 (439)
Q Consensus 427 V~~Ma~~~~~pi~ 439 (439)
|++|+++|++|||
T Consensus 420 i~~Ma~~~~rPII 432 (581)
T PLN03129 420 LEAMASLNERPII 432 (581)
T ss_pred HHHHHhcCCCCEE
Confidence 9999999999997
No 5
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=1e-85 Score=612.06 Aligned_cols=181 Identities=61% Similarity=1.125 Sum_probs=163.0
Q ss_pred hcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 013638 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (439)
Q Consensus 106 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 185 (439)
|++||+|||+++.+|++|+||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-C
Q 013638 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-P 264 (439)
Q Consensus 186 LGDlG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~-P 264 (439)
|||+|++|||||+||++|||+||||||++|||||||+||||++||+||+|+|+||||++|++|++|+||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ceEEEEecCCCchHHHHHHHHh
Q 013638 265 KAIVQFEDFQMKWAFETLERYR 286 (439)
Q Consensus 265 ~~~IqfEDf~~~naf~iL~ryr 286 (439)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 6
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=1.3e-81 Score=641.78 Aligned_cols=292 Identities=34% Similarity=0.507 Sum_probs=254.7
Q ss_pred cccHHHHHHHHHHHHhchhcccCCCCCCcCchhHHHHHHHhhcccchhhheeeccCcccccceecccchHHHHHHHhhhc
Q 013638 65 VISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144 (439)
Q Consensus 65 v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~ 144 (439)
++|+| |.+|++.++..+.. .+|++|.|+ ++|+++||.++-.|..|+|||+||||||++|++|++.|
T Consensus 1 v~t~~-q~~~~~~~~~~~~~---------~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~ 66 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKT---------EALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDP 66 (432)
T ss_pred CccHH-HHHHHHHHHhhhhh---------hhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCc
Confidence 57899 99999999998873 489999999 89999999999999999999999999999999999877
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-CcccccchhhhHHHhhcCCCCCceecEEeecc
Q 013638 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV-QGIGIPIGKLDVYVAAAGINPQRILPVMLDVG 223 (439)
Q Consensus 145 r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvG 223 (439)
++++ ++.. ++++|||||||||||||||||+ +||||||||++|||+||||| +||||||+|
T Consensus 67 ~~~~-------------~yt~----~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~ 126 (432)
T COG0281 67 RKAY-------------SYTA----RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVG 126 (432)
T ss_pred chhh-------------hcCC----CCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCC
Confidence 7764 3333 4469999999999999999995 99999999999999999999 999999999
Q ss_pred CCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHH
Q 013638 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVA 303 (439)
Q Consensus 224 Tnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~ 303 (439)
|||+ +++||+++...||...+|||||..-|+.+.+.|||..||||||||||||+|+
T Consensus 127 ~~~e------------------------i~~~Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~ 182 (432)
T COG0281 127 TNNE------------------------IIEFVKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVT 182 (432)
T ss_pred ChHH------------------------HHHHHHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccccHHHHHH
Confidence 9975 7888888888888877777777555555555666667999999999999999
Q ss_pred HHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC--CChhh
Q 013638 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDPAA 381 (439)
Q Consensus 304 LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~--L~~~k 381 (439)
||||+||+|++|++|+| +||||+|||+||+|||++|+.+|+ ++ ++||||||+|+|+++|++ ++++|
T Consensus 183 lA~llnalk~~gk~l~d---~kiv~~GAGAAgiaia~~l~~~g~-----~~----~~i~~~D~~G~l~~~r~~~~~~~~k 250 (432)
T COG0281 183 LAALLNALKLTGKKLKD---QKIVINGAGAAGIAIADLLVAAGV-----KE----ENIFVVDRKGLLYDGREDLTMNQKK 250 (432)
T ss_pred HHHHHHHHHHhCCCccc---eEEEEeCCcHHHHHHHHHHHHhCC-----Cc----ccEEEEecCCcccCCCcccccchHH
Confidence 99999999999999999 999999999999999999999866 32 799999999999999976 56677
Q ss_pred hcccc-ccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 382 APFAK-DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 382 ~~fA~-~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
..+|. ...+| .+ .+++.+ ||||||+|++ |+||+|||++|+++ |||
T Consensus 251 ~~~a~~~~~~~------~~-~~~~~~--adv~iG~S~~-G~~t~e~V~~Ma~~---PiI 296 (432)
T COG0281 251 YAKAIEDTGER------TL-DLALAG--ADVLIGVSGV-GAFTEEMVKEMAKH---PII 296 (432)
T ss_pred HHHHHhhhccc------cc-cccccC--CCEEEEcCCC-CCcCHHHHHHhccC---CEE
Confidence 77775 44333 21 446655 9999999996 99999999999998 775
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=2.8e-75 Score=637.76 Aligned_cols=259 Identities=28% Similarity=0.451 Sum_probs=233.4
Q ss_pred cccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeecc
Q 013638 107 DRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGL 186 (439)
Q Consensus 107 ~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGL 186 (439)
.+-++. -++.+++.++ |+++|||||+++|+++. +|++.+++++. +.+.|||||||||||||
T Consensus 25 gk~~~~-~~~~~~~~~d-l~~~ytpgv~~~~~~i~-------------~~~~~~~~~t~----~~n~v~vvtdg~~vLGl 85 (763)
T PRK12862 25 GKIEIA-PTKPLANQRD-LALAYSPGVAAPCLEIA-------------ADPANAARYTS----RGNLVAVVSNGTAVLGL 85 (763)
T ss_pred CeEEEE-ecCCCCCHHH-ceeeeCCchHHHHHHHH-------------hChHhhhhccc----CCcEEEEEechhhhccc
Confidence 344443 6778888887 79999999999999987 56666665543 66899999999999999
Q ss_pred CCCCCCc-ccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCc
Q 013638 187 GDLGVQG-IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK 265 (439)
Q Consensus 187 GDlG~~G-m~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~ 265 (439)
||+|++| |||||||++|||+||||| ++|+||||+ || ||||++|+++||+
T Consensus 86 Gd~G~~~~~pv~egK~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~p~ 135 (763)
T PRK12862 86 GNIGPLASKPVMEGKAVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALEPT 135 (763)
T ss_pred cccCcccccchHHHHHHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhCCC
Confidence 9999975 999999999999999999 555566665 65 9999999999999
Q ss_pred e-EEEEecCCCchHHHHHHHHhhc--ccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHH
Q 013638 266 A-IVQFEDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMA 342 (439)
Q Consensus 266 ~-~IqfEDf~~~naf~iL~ryr~~--~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li 342 (439)
+ +||||||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||++|
T Consensus 136 f~~i~~ED~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~---~~iv~~GaGaag~~~a~~l 212 (763)
T PRK12862 136 FGGINLEDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIED---VKLVASGAGAAALACLDLL 212 (763)
T ss_pred cceeeeecccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhh---cEEEEEChhHHHHHHHHHH
Confidence 5 9999999999999999999998 89999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHcCCChhhhcCeEEEEecccccccCCCC-CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCC
Q 013638 343 VQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV 421 (439)
Q Consensus 343 ~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~-L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~ 421 (439)
+. .|+++ +||||||++|||+++|++ |+++|++||++++ ..+|+|||++ ||||||+|+ ||+
T Consensus 213 ~~-----~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~-------~~~l~e~~~~--~~v~iG~s~-~g~ 273 (763)
T PRK12862 213 VS-----LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD-------ARTLAEVIEG--ADVFLGLSA-AGV 273 (763)
T ss_pred HH-----cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc-------cCCHHHHHcC--CCEEEEcCC-CCC
Confidence 76 48874 799999999999999975 9999999999853 3589999999 999999999 999
Q ss_pred CCHHHHHHHhccCCCCCC
Q 013638 422 FNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 422 FteevV~~Ma~~~~~pi~ 439 (439)
||+|||++|+ ++|||
T Consensus 274 ~~~~~v~~M~---~~pii 288 (763)
T PRK12862 274 LKPEMVKKMA---PRPLI 288 (763)
T ss_pred CCHHHHHHhc---cCCEE
Confidence 9999999999 88986
No 8
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=5.2e-75 Score=632.97 Aligned_cols=260 Identities=26% Similarity=0.459 Sum_probs=230.9
Q ss_pred cccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeecc
Q 013638 107 DRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGL 186 (439)
Q Consensus 107 ~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGL 186 (439)
.+-++. -++.+.+.++ |+++|||||+++|+++. ++|+++ ++++. +.+.|+|||||||||||
T Consensus 21 gk~~~~-~~~~~~~~~d-l~l~YtPgVa~~c~~i~---~~p~~~----------~~~t~----r~n~v~VvtdG~~vLGL 81 (764)
T PRK12861 21 GKISVV-ASKPLVTQRD-LALAYTPGVASACEEIA---ADPLNA----------FRFTS----RGNLVGVITNGTAVLGL 81 (764)
T ss_pred CeEEEE-eccccCChHH-ceeecCCchHHHHHHHH---hChHhh----------hhhhc----cCcEEEEEecchhhccC
Confidence 344443 6778888887 79999999999999954 555555 33333 44679999999999999
Q ss_pred CCCCCCc-ccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCc
Q 013638 187 GDLGVQG-IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK 265 (439)
Q Consensus 187 GDlG~~G-m~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~ 265 (439)
||+|++| |||||||++|||+||||| ++|+|||| +|| |+|+ |||+++..+||.
T Consensus 82 GdiG~~a~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~ 134 (764)
T PRK12861 82 GNIGALASKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG 134 (764)
T ss_pred CCcCcccccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC
Confidence 9999965 999999999999999999 67777777 787 7888 999999999988
Q ss_pred eEEEEecCCCchHHHHHHHHhhc--ccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHH
Q 013638 266 AIVQFEDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (439)
Q Consensus 266 ~~IqfEDf~~~naf~iL~ryr~~--~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~ 343 (439)
||||||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||++|+
T Consensus 135 --i~lED~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d---~~iv~~GAGaAg~~ia~~l~ 209 (764)
T PRK12861 135 --INLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKE---VKVVTSGAGAAALACLDLLV 209 (764)
T ss_pred --ceeeeccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhH---cEEEEECHhHHHHHHHHHHH
Confidence 999999999999999999995 99999999999999999999999999999999 99999999999999999986
Q ss_pred HHHHHHcCCChhhhcCeEEEEecccccccCCCC-CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCC
Q 013638 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (439)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~-L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~F 422 (439)
. .|+++| |||||||+|||+++|++ |+++|++||++++ ..||+|||++ ||||||+|+ ||+|
T Consensus 210 ~-----~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~-------~~~L~eai~~--advliG~S~-~g~f 270 (764)
T PRK12861 210 D-----LGLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD-------ARTLAEVIGG--ADVFLGLSA-GGVL 270 (764)
T ss_pred H-----cCCChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC-------CCCHHHHHhc--CCEEEEcCC-CCCC
Confidence 5 588864 99999999999999976 9999999999853 3689999999 899999998 9999
Q ss_pred CHHHHHHHhccCCCCCC
Q 013638 423 NEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 423 teevV~~Ma~~~~~pi~ 439 (439)
|+|||++|++ +|||
T Consensus 271 t~e~v~~Ma~---~PII 284 (764)
T PRK12861 271 KAEMLKAMAA---RPLI 284 (764)
T ss_pred CHHHHHHhcc---CCEE
Confidence 9999999997 8886
No 9
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=5.5e-75 Score=632.95 Aligned_cols=259 Identities=30% Similarity=0.483 Sum_probs=233.8
Q ss_pred cccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeecc
Q 013638 107 DRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGL 186 (439)
Q Consensus 107 ~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGL 186 (439)
.+-++. -++.+.+.++ |+++||||||++|+++ +++|+++| ++.+++ +.|+|||||||||||
T Consensus 17 gk~~~~-~~~~~~~~~d-l~~~Ytpgv~~~c~~i---~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGl 77 (752)
T PRK07232 17 GKIEVT-PTKPLATQRD-LSLAYSPGVAAPCLEI---AKDPADAY-KYTARG-------------NLVAVISNGTAVLGL 77 (752)
T ss_pred CeEEEE-eccccCChhh-cceecCCchHHHHHHH---HhChhhcc-ccccCC-------------cEEEEEccchhhccc
Confidence 344443 6777888877 7999999999999955 57888888 777665 469999999999999
Q ss_pred CCCCCC-cccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCc
Q 013638 187 GDLGVQ-GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK 265 (439)
Q Consensus 187 GDlG~~-Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~ 265 (439)
||+|++ ||||||||++|||+||||| ++|+||||+ | +||||++|+.+||+
T Consensus 78 Gd~G~~a~~pv~egK~~l~~~~~gid-------~~~i~~~~~----d-------------------~de~v~~v~~~~p~ 127 (752)
T PRK07232 78 GNIGALASKPVMEGKGVLFKKFAGID-------VFDIEVDEE----D-------------------PDKFIEAVAALEPT 127 (752)
T ss_pred cccccccCccHHHHHHHHHHhhcCCC-------ccccccCCC----C-------------------HHHHHHHHHHhCCC
Confidence 999996 9999999999999999999 555666664 4 89999999999999
Q ss_pred e-EEEEecCCCchHHHHHHHHhhc--ccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHH
Q 013638 266 A-IVQFEDFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMA 342 (439)
Q Consensus 266 ~-~IqfEDf~~~naf~iL~ryr~~--~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li 342 (439)
+ +||||||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++++| +||||+|||+||+|||++|
T Consensus 128 ~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~---~~iv~~GaGaag~~~a~~l 204 (752)
T PRK07232 128 FGGINLEDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIED---VKIVVSGAGAAAIACLNLL 204 (752)
T ss_pred ccEEeeeecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECccHHHHHHHHHH
Confidence 8 9999999999999999999998 79999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCC
Q 013638 343 VQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV 421 (439)
Q Consensus 343 ~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~ 421 (439)
+. .|++ +++|||||++|||+++| ++|+++|++||++++ ..+|+|||++ ||||||+|+ ||+
T Consensus 205 ~~-----~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~-------~~~l~~~i~~--~~v~iG~s~-~g~ 265 (752)
T PRK07232 205 VA-----LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD-------ARTLAEAIEG--ADVFLGLSA-AGV 265 (752)
T ss_pred HH-----cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCC-------CCCHHHHHcC--CCEEEEcCC-CCC
Confidence 76 4887 57999999999999999 579999999999843 3589999999 999999999 999
Q ss_pred CCHHHHHHHhccCCCCCC
Q 013638 422 FNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 422 FteevV~~Ma~~~~~pi~ 439 (439)
||+|||++|++ +|||
T Consensus 266 ~~~~~v~~M~~---~pii 280 (752)
T PRK07232 266 LTPEMVKSMAD---NPII 280 (752)
T ss_pred CCHHHHHHhcc---CCEE
Confidence 99999999985 8886
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1e-44 Score=353.55 Aligned_cols=137 Identities=45% Similarity=0.694 Sum_probs=123.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCC
Q 013638 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (439)
Q Consensus 296 iQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~ 375 (439)
|||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++||||+|++|||+++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~G~~~~eA~~~i~lvD~~Gll~~~r~ 76 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSD---QRIVFFGAGSAGIGIARLLVAAMV-REGLSEEEARKRIWLVDSKGLLTDDRE 76 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG----EEEEEB-SHHHHHHHHHHHHHHH-CTTS-HHHHHTTEEEEETTEEEBTTTS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHH---cEEEEeCCChhHHHHHHHHHHHHH-HhcCCHHHHhccEEEEeccceEeccCc
Confidence 8999999999999999999999999 999999999999999999999999 789999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 376 ~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+|+++|++|||+.+++. ...||+|+|+++|||||||+|+++|+||||||++|+++|++|||
T Consensus 77 ~l~~~~~~~a~~~~~~~---~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPII 137 (255)
T PF03949_consen 77 DLNPHKKPFARKTNPEK---DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPII 137 (255)
T ss_dssp SHSHHHHHHHBSSSTTT-----SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEE
T ss_pred cCChhhhhhhccCcccc---cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEE
Confidence 99999999999987642 23689999999999999999999999999999999999999997
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=5.4e-43 Score=341.10 Aligned_cols=134 Identities=33% Similarity=0.514 Sum_probs=127.9
Q ss_pred cchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCC
Q 013638 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (439)
Q Consensus 296 iQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~ 375 (439)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||++|++|||+++|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~Gls~e~A~~~i~~vD~~Gll~~~r~ 76 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISE---HKVLFNGAGAAALGIANLIVXLXV-KEGISKEEACKRIWXVDRKGLLVKNRK 76 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-hcCCCHHHHhccEEEECCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999999
Q ss_pred CCChhhhc---cccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 376 NLDPAAAP---FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 376 ~L~~~k~~---fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+|+++|++ |+++.+ +..+|+|+|+.+|||||||+|++||+||||||++|+++|++|||
T Consensus 77 ~l~~~~~~~~~~~~~~~------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PII 137 (254)
T cd00762 77 ETCPNEYHLARFANPER------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVI 137 (254)
T ss_pred ccCHHHHHHHHHcCccc------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEE
Confidence 89999999 777642 35799999999999999999999999999999999999999997
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=7.9e-43 Score=344.02 Aligned_cols=136 Identities=51% Similarity=0.776 Sum_probs=130.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCC
Q 013638 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (439)
Q Consensus 296 iQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~ 375 (439)
|||||+|+|||++||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||+++|||+|++|||+++|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d---~~iv~~GAGsAg~gia~ll~~~~~-~~G~~~eeA~~~i~~vD~~Gll~~~r~ 76 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSD---QRILFLGAGSAGIGIADLIVSAMV-REGLSEEEARKKIWLVDSKGLLTKDRK 76 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-HcCCChhhccCeEEEEcCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 376 ~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+|+++|++||++.++ .+.++|+|+|+++|||||||+|+++|+||+|||++|++||++|||
T Consensus 77 ~l~~~~~~~a~~~~~----~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PII 136 (279)
T cd05312 77 DLTPFKKPFARKDEE----KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPII 136 (279)
T ss_pred cchHHHHHHHhhcCc----ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEE
Confidence 899999999998653 245799999999999999999999999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.88 E-value=1e-22 Score=195.41 Aligned_cols=123 Identities=31% Similarity=0.534 Sum_probs=106.8
Q ss_pred cchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCC
Q 013638 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (439)
Q Consensus 296 iQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~ 375 (439)
|||||+|++||+++|++..|+++++ +||||+|||+||.|||++|.. .|++ +++||++|++|+++.+|.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~---~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEE---VKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGRE 68 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccC---CEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccc
Confidence 7999999999999999999999999 999999999999999999965 4776 579999999999999984
Q ss_pred -CCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 376 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 376 -~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+|.++|++|+++.+. . ....+|.|++++ ||+|||+|+ +|+||+++++.|+ ++|||
T Consensus 69 ~~L~~~~~~la~~~~~-~--~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~iv 124 (226)
T cd05311 69 DDLNPDKNEIAKETNP-E--KTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIV 124 (226)
T ss_pred hhhhHHHHHHHHHhcc-C--cccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEE
Confidence 599999999986431 1 111479899987 999999999 9999999999997 45654
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.58 E-value=2.8e-07 Score=75.75 Aligned_cols=82 Identities=27% Similarity=0.305 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCC
Q 013638 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L 377 (439)
+||+++++++..+.+..+.+++. .+++|+|+|.+|.+++..+.+.. -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~---~~v~i~G~G~~g~~~a~~l~~~~-----------~~~v~v~~r----------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKG---KTVVVLGAGEVGKGIAKLLADEG-----------GKKVVLCDR----------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCC---CEEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcC-----------
Confidence 69999999999999999988888 99999999999999999887742 147898888
Q ss_pred ChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
|++|++++.++.|+++ .|+..++.|+|
T Consensus 56 --------------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v 82 (86)
T cd05191 56 --------------------------------DILVTATPAGVPVLEE---ATAKINEGAVV 82 (86)
T ss_pred --------------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEE
Confidence 8999999988999887 55556666664
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.42 E-value=0.00099 Score=70.53 Aligned_cols=149 Identities=19% Similarity=0.224 Sum_probs=97.9
Q ss_pred CCChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHHH---------------------HHHHhh-------cccccc
Q 013638 242 RLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFET---------------------LERYRK-------RFCMFN 293 (439)
Q Consensus 242 R~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~i---------------------L~ryr~-------~~~~FN 293 (439)
..+-+||+..+++.+ ...-|+.+| |.+..-...+ ..||+. .+|+||
T Consensus 105 ~~~~~ey~~~~~~~l---~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~ 178 (425)
T PRK05476 105 GETLEEYWECIERAL---DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAIN 178 (425)
T ss_pred CCCHHHHHHHHHHHh---cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEe
Confidence 346678877776665 123366666 6666555544 245554 389998
Q ss_pred ----------cCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEE
Q 013638 294 ----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (439)
Q Consensus 294 ----------DDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~l 363 (439)
|--.||+--++-|+..+ ++..+.. .+++|+|+|..|.++|..+... |. ++++
T Consensus 179 vn~s~~K~~~dn~~gt~~s~~~ai~ra---t~~~l~G---k~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV 240 (425)
T PRK05476 179 VNDSVTKSKFDNRYGTGESLLDGIKRA---TNVLIAG---KVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIV 240 (425)
T ss_pred cCCcccCccccccHHHHhhhHHHHHHh---ccCCCCC---CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEE
Confidence 77789988777666543 3555666 9999999999999998887653 32 6888
Q ss_pred EecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 364 LDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 364 vDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
+|.+- .+ ...|.... ....++.++++. +|++|-+++.+++|+.+.++.|..
T Consensus 241 ~d~dp----~r-------a~~A~~~G-----~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK~ 291 (425)
T PRK05476 241 TEVDP----IC-------ALQAAMDG-----FRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMKD 291 (425)
T ss_pred EcCCc----hh-------hHHHHhcC-----CEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCCC
Confidence 88632 11 11111110 012357788876 899988877677888888888765
No 16
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.10 E-value=0.0025 Score=67.25 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=97.6
Q ss_pred CChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHHHH---------------------HHHhh-------cccccc-
Q 013638 243 LEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETL---------------------ERYRK-------RFCMFN- 293 (439)
Q Consensus 243 ~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL---------------------~ryr~-------~~~~FN- 293 (439)
.+-++|+..++..++.- ..-|+.+| |.+..-...+- .||+. .+|+|+
T Consensus 94 ~~~~~y~~~~~~~l~~~-~~~p~~i~---DdGg~~~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~l~~Pv~~v 169 (413)
T cd00401 94 ETLEEYWWCIEQALKFP-DGEPNMIL---DDGGDLTLLIHKKHPELLPGIRGISEETTTGVHRLYKMEKEGKLKFPAINV 169 (413)
T ss_pred CCHHHHHHHHHHHHhcc-CCCCcEEE---ecchHHHHHHHhhhhhhhhccEEEeecchHHHHHHHHHHHCCCCCCCEEEe
Confidence 44567777655544431 11466666 55554444332 45553 378885
Q ss_pred ---------cCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE
Q 013638 294 ---------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL 364 (439)
Q Consensus 294 ---------DDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lv 364 (439)
|.-.||+--++-+++. .++..+.. .+++|+|+|..|.++|..+... |. +++++
T Consensus 170 nds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~G---ktVvViG~G~IG~~va~~ak~~-----Ga-------~ViV~ 231 (413)
T cd00401 170 NDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAG---KVAVVAGYGDVGKGCAQSLRGQ-----GA-------RVIVT 231 (413)
T ss_pred cchhhcccccccchhchhhHHHHHH---hcCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 7788999998887776 45666666 9999999999999998877553 42 57777
Q ss_pred ecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 365 DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 365 Ds~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
|.+ +.+..+|+... ....++.|+++. .|++|-+++.+++|+++.++.|..
T Consensus 232 d~d-----------~~R~~~A~~~G-----~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk~ 281 (413)
T cd00401 232 EVD-----------PICALQAAMEG-----YEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMKD 281 (413)
T ss_pred ECC-----------hhhHHHHHhcC-----CEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCCC
Confidence 752 22333443211 011246788876 799998888778888888887764
No 17
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.78 E-value=0.0038 Score=64.44 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=79.2
Q ss_pred ceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCc-hhHHHHHHHHHH
Q 013638 265 KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAV 343 (439)
Q Consensus 265 ~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GA-GsAgiGiA~li~ 343 (439)
+.-|.||||.+-|++ |+++..+++--|.+..|..+++ .+++|.|| |+.|--+|++|.
T Consensus 119 ~i~ie~~~~TtGNs~-------------------T~~ll~~~V~la~~~lg~~l~~---k~VLVtGAtG~IGs~lar~L~ 176 (340)
T PRK14982 119 NTTLEWERFTTGNTH-------------------TAYVICRQVEQNAPRLGIDLSK---ATVAVVGATGDIGSAVCRWLD 176 (340)
T ss_pred cceeccccccCCchh-------------------HHHHHHHHHHHhHHHhccCcCC---CEEEEEccChHHHHHHHHHHH
Confidence 334444557777776 7888888888888888888887 99999999 899999999986
Q ss_pred HHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCC-C-C
Q 013638 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-G-V 421 (439)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~-G-~ 421 (439)
.. .|. ++++++++. ...+...+.++... ...++.+++.. +|++|-+++.+ . .
T Consensus 177 ~~----~gv------~~lilv~R~------~~rl~~La~el~~~--------~i~~l~~~l~~--aDiVv~~ts~~~~~~ 230 (340)
T PRK14982 177 AK----TGV------AELLLVARQ------QERLQELQAELGGG--------KILSLEEALPE--ADIVVWVASMPKGVE 230 (340)
T ss_pred hh----CCC------CEEEEEcCC------HHHHHHHHHHhccc--------cHHhHHHHHcc--CCEEEECCcCCcCCc
Confidence 52 232 478888764 11222223333211 12358889987 99999887764 3 3
Q ss_pred CCHHHH
Q 013638 422 FNEEVK 427 (439)
Q Consensus 422 FteevV 427 (439)
++++.+
T Consensus 231 I~~~~l 236 (340)
T PRK14982 231 IDPETL 236 (340)
T ss_pred CCHHHh
Confidence 777765
No 18
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.62 E-value=0.0085 Score=60.26 Aligned_cols=85 Identities=19% Similarity=0.328 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC
Q 013638 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGs-AgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~ 376 (439)
..+-.|-.|++..++..+.+++. ++++++|+|- +|.++|.+|... |. .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~G---k~vvViG~gg~vGkpia~~L~~~-----ga-------tVtv~~~~--------- 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAG---KHAVVVGRSAILGKPMAMMLLNA-----NA-------TVTICHSR--------- 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHHhC-----CC-------EEEEEeCC---------
Confidence 45777779999999999998888 9999999997 999999888542 32 68888752
Q ss_pred CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 377 L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.+.++. +|++|-+.+.++.|+.++++
T Consensus 193 --------------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk 222 (283)
T PRK14192 193 --------------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK 222 (283)
T ss_pred --------------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC
Confidence 1236666765 88888888888888888764
No 19
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.53 E-value=0.015 Score=61.36 Aligned_cols=61 Identities=30% Similarity=0.475 Sum_probs=46.6
Q ss_pred ccccc----------cCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc
Q 013638 289 FCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (439)
Q Consensus 289 ~~~FN----------DDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~ 358 (439)
+|+|| |.-.||+--++-+++. .++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 157 ~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~r---~t~~~l~G---k~VvViG~G~IG~~vA~~ak~~-----Ga------ 219 (406)
T TIGR00936 157 FPAINVNDAYTKSLFDNRYGTGQSTIDGILR---ATNLLIAG---KTVVVAGYGWCGKGIAMRARGM-----GA------ 219 (406)
T ss_pred CcEEEecchhhchhhhcccccchhHHHHHHH---hcCCCCCc---CEEEEECCCHHHHHHHHHHhhC-----cC------
Confidence 78887 7778999877766654 45655666 9999999999999999877653 32
Q ss_pred CeEEEEecc
Q 013638 359 NKFFLLDKD 367 (439)
Q Consensus 359 ~~i~lvDs~ 367 (439)
+++.+|.+
T Consensus 220 -~ViV~d~d 227 (406)
T TIGR00936 220 -RVIVTEVD 227 (406)
T ss_pred -EEEEEeCC
Confidence 57878754
No 20
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.52 E-value=0.028 Score=60.50 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred ccccccCcchhHHHH-------HHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 013638 289 FCMFNDDIQGTAGVA-------LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (439)
Q Consensus 289 ~~~FNDDiQGTaaV~-------LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i 361 (439)
+|++|=+---|-++. ++.+-+.+|.++..+.. .+++|+|.|..|.++|..+... |. ++
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaG---KtVgVIG~G~IGr~vA~rL~a~-----Ga-------~V 280 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAG---KTVVVCGYGDVGKGCAQALRGF-----GA-------RV 280 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EE
Confidence 788886555444433 44445556667777766 9999999999999999988653 32 57
Q ss_pred EEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 362 ~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
+++|++-. + ...|... . ....++.|+++. .|++|-+.+..++|+++.++.|..
T Consensus 281 iV~e~dp~----~-------a~~A~~~-G----~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MKp 333 (476)
T PTZ00075 281 VVTEIDPI----C-------ALQAAME-G----YQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMKN 333 (476)
T ss_pred EEEeCCch----h-------HHHHHhc-C----ceeccHHHHHhc--CCEEEECCCcccccCHHHHhccCC
Confidence 77766411 1 0001100 0 012358888877 899988777778889888888875
No 21
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.25 E-value=0.017 Score=53.95 Aligned_cols=70 Identities=17% Similarity=0.326 Sum_probs=51.6
Q ss_pred HhCCCccCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCc
Q 013638 313 AQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDF 391 (439)
Q Consensus 313 ~~g~~l~dl~~~riv~~GAGs-AgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~ 391 (439)
-....|.+ .+++++|+|. +|..+|+.+... |. ++++++++-
T Consensus 37 ~~~~~l~g---k~vlViG~G~~~G~~~a~~L~~~-----g~-------~V~v~~r~~----------------------- 78 (168)
T cd01080 37 RYGIDLAG---KKVVVVGRSNIVGKPLAALLLNR-----NA-------TVTVCHSKT----------------------- 78 (168)
T ss_pred HcCCCCCC---CEEEEECCcHHHHHHHHHHHhhC-----CC-------EEEEEECCc-----------------------
Confidence 33445555 9999999997 699898887653 32 588888640
Q ss_pred CCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 392 MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 392 ~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..|.+.++. +|++|.+++.+.+|++++++
T Consensus 79 ------~~l~~~l~~--aDiVIsat~~~~ii~~~~~~ 107 (168)
T cd01080 79 ------KNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK 107 (168)
T ss_pred ------hhHHHHHhh--CCEEEEcCCCCceecHHHcc
Confidence 126777777 88998888877888888764
No 22
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.89 E-value=0.021 Score=57.75 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=87.4
Q ss_pred HHHHHHHHHhC--Cce---EEEEecCCCchHHHHHHHHhh--ccc---------ccccCcchhHHHHHHHHHHHHHHhCC
Q 013638 253 DEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRK--RFC---------MFNDDIQGTAGVALAGLLGTVRAQGL 316 (439)
Q Consensus 253 defv~av~~~~--P~~---~IqfEDf~~~naf~iL~ryr~--~~~---------~FNDDiQGTaaV~LAgll~A~r~~g~ 316 (439)
+||.+.+++.- |++ ++|+==...-+..++++...- .+= .|.++ .+=.-+|-+|++.-++-.+.
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~-~~~~PcTp~ai~~ll~~~~i 154 (286)
T PRK14175 76 EEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDE-QTFVPCTPLGIMEILKHADI 154 (286)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCC-CCCCCCcHHHHHHHHHHcCC
Confidence 56777777664 542 666532222333344443321 121 22222 34456788899999999999
Q ss_pred CccCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCC
Q 013638 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGs-AgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~ 395 (439)
+|+. .+++++|+|. .|..+|.++... | ..+++++++.
T Consensus 155 ~l~G---k~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t--------------------------- 192 (286)
T PRK14175 155 DLEG---KNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS--------------------------- 192 (286)
T ss_pred CCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc---------------------------
Confidence 8888 9999999988 999999998652 3 3678887641
Q ss_pred CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 396 ~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
.+|.+.++. +|++|.+.+.|+.|++++|+
T Consensus 193 --~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 193 --KDMASYLKD--ADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred --hhHHHHHhh--CCEEEECCCCCcccCHHHcC
Confidence 137777887 99999888888889998875
No 23
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.70 E-value=0.032 Score=58.63 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC
Q 013638 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (439)
Q Consensus 297 QGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~ 376 (439)
.+.-+|+.+++-.|.+..+. +.+ .+++|+|+|..|..+|..+... |. .+++++|+.. ++
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~---~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~----~r-- 216 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKG---KKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY----ER-- 216 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH----HH--
Confidence 55566777776666666553 455 8999999999999998887653 43 4789888732 11
Q ss_pred CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCC-CCCCHHHHHHHhc
Q 013638 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVKTYFLC 432 (439)
Q Consensus 377 L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~-G~FteevV~~Ma~ 432 (439)
...+++.... .. -...++.+++.. .|++|-+++.+ .++++++++.+..
T Consensus 217 ----a~~la~~~g~-~~-i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~ 265 (417)
T TIGR01035 217 ----AEDLAKELGG-EA-VKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALR 265 (417)
T ss_pred ----HHHHHHHcCC-eE-eeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHh
Confidence 1123322100 00 011357788887 99999987644 6799999998754
No 24
>PLN02494 adenosylhomocysteinase
Probab=95.69 E-value=0.033 Score=60.00 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=43.7
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 294 DDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
|-..||+--++-|++. .++..+.. .+++|+|.|..|.++|..+... |. +++.+|.+
T Consensus 231 Dn~yGtgqS~~d~i~r---~t~i~LaG---KtVvViGyG~IGr~vA~~aka~-----Ga-------~VIV~e~d 286 (477)
T PLN02494 231 DNLYGCRHSLPDGLMR---ATDVMIAG---KVAVICGYGDVGKGCAAAMKAA-----GA-------RVIVTEID 286 (477)
T ss_pred hccccccccHHHHHHH---hcCCccCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 5577888888888874 56666666 9999999999999999987543 43 58888765
No 25
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.59 E-value=0.048 Score=54.99 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=74.6
Q ss_pred chHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 013638 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (439)
Q Consensus 276 ~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~e 355 (439)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.. .+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~---~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKG---KKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 56777777777764444 33455666666555555554 555 8999999999999998887652 32
Q ss_pred hhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHh
Q 013638 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFL 431 (439)
Q Consensus 356 eA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma 431 (439)
++|+++|+. .+ ....+|+.-.... ....++.++++. +|++|-+++.+.. +++++.+.
T Consensus 203 ---~~V~v~~r~----~~------ra~~la~~~g~~~--~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~ 259 (311)
T cd05213 203 ---AEITIANRT----YE------RAEELAKELGGNA--VPLDELLELLNE--ADVVISATGAPHY--AKIVERAM 259 (311)
T ss_pred ---CEEEEEeCC----HH------HHHHHHHHcCCeE--EeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHH
Confidence 579999873 11 1122333211000 011247788877 8999988875555 66666554
No 26
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.54 E-value=0.039 Score=58.04 Aligned_cols=104 Identities=23% Similarity=0.291 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
..+|+.+|+--|.+..+ ++.. .+++|+|||..|..+|..+.. .|. ++|+++|+.. .+
T Consensus 162 ~~Sv~~~Av~~a~~~~~-~~~~---~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~~----~r---- 218 (423)
T PRK00045 162 AVSVASAAVELAKQIFG-DLSG---KKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRTL----ER---- 218 (423)
T ss_pred CcCHHHHHHHHHHHhhC-CccC---CEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCCH----HH----
Confidence 55666666544444434 3555 899999999999999887754 354 4799888742 11
Q ss_pred hhhhccccccC-CcCCCCCCCCHHHHhccCCCcEEEeccCCC-CCCCHHHHHHHhc
Q 013638 379 PAAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVKTYFLC 432 (439)
Q Consensus 379 ~~k~~fA~~~~-~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~-G~FteevV~~Ma~ 432 (439)
...+++... .. ....++.+++.. +|++|.+++.+ .++++++++.+.+
T Consensus 219 --a~~la~~~g~~~---~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~ 267 (423)
T PRK00045 219 --AEELAEEFGGEA---IPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALK 267 (423)
T ss_pred --HHHHHHHcCCcE---eeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHh
Confidence 112332110 00 011346777876 89999988755 5799999998753
No 27
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.48 E-value=0.072 Score=51.57 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
||-=+..++-.+++..+.+|+. .||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. .|+
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~--Gld 65 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEG---LTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP--GIT 65 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC--CCC
Confidence 4444556677788888877777 9999999999999999998764 33 478899999988877 455
Q ss_pred hhh-hccccccCCcCCCC--CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHh
Q 013638 379 PAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFL 431 (439)
Q Consensus 379 ~~k-~~fA~~~~~~~~~~--~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma 431 (439)
..+ ..+.+........+ +..+ .+.+..++.||||=++. .+.+|++..+.+.
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~DVlipaA~-~~~i~~~~a~~l~ 119 (217)
T cd05211 66 TEELINYAVALGGSARVKVQDYFP-GEAILGLDVDIFAPCAL-GNVIDLENAKKLK 119 (217)
T ss_pred HHHHHHHHHhhCCccccCcccccC-cccceeccccEEeeccc-cCccChhhHhhcC
Confidence 432 22221110000000 0111 13344567999997776 7899999988873
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.17 E-value=0.051 Score=54.67 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhc
Q 013638 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (439)
Q Consensus 304 LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~ 383 (439)
-+++..|++..+..+.. .|++|+|+|.+|..++..+... |. +++++|++- .+..
T Consensus 136 egav~~a~~~~~~~l~g---~kvlViG~G~iG~~~a~~L~~~-----Ga-------~V~v~~r~~-----------~~~~ 189 (296)
T PRK08306 136 EGAIMMAIEHTPITIHG---SNVLVLGFGRTGMTLARTLKAL-----GA-------NVTVGARKS-----------AHLA 189 (296)
T ss_pred HHHHHHHHHhCCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEECCH-----------HHHH
Confidence 33555667777777777 9999999999999998887653 42 689998851 1111
Q ss_pred cccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 384 fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
.++...- . .....++.+.++. .|++|-++ .+..++++.++.|.+
T Consensus 190 ~~~~~G~-~-~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~~ 233 (296)
T PRK08306 190 RITEMGL-S-PFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMPP 233 (296)
T ss_pred HHHHcCC-e-eecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCCC
Confidence 2211100 0 0012357788886 99999865 357788998888864
No 29
>PLN00203 glutamyl-tRNA reductase
Probab=95.05 E-value=0.048 Score=59.30 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhCC-CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCCh
Q 013638 301 GVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (439)
Q Consensus 301 aV~LAgll~A~r~~g~-~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~ 379 (439)
+|+-+++--|.+..|. ++.+ .+|+|+|||..|..++..+.. .|. ++|+++++.. ++ ...
T Consensus 246 Sv~s~Av~la~~~~~~~~l~~---kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs~----er--a~~ 305 (519)
T PLN00203 246 SVSSAAVELALMKLPESSHAS---ARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRSE----ER--VAA 305 (519)
T ss_pred CHHHHHHHHHHHhcCCCCCCC---CEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCCH----HH--HHH
Confidence 3343444445555553 4666 999999999999999877653 353 4799988741 11 111
Q ss_pred hhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCC-CCCCHHHHHHHhc
Q 013638 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVKTYFLC 432 (439)
Q Consensus 380 ~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~-G~FteevV~~Ma~ 432 (439)
....|-...-.+ ....++.+++.. +|++|.+++.+ .+|++++++.|-+
T Consensus 306 La~~~~g~~i~~---~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~ 354 (519)
T PLN00203 306 LREEFPDVEIIY---KPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPP 354 (519)
T ss_pred HHHHhCCCceEe---ecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhh
Confidence 111221000000 012357888887 99999876644 6899999999853
No 30
>PRK14031 glutamate dehydrogenase; Provisional
Probab=95.03 E-value=0.47 Score=50.94 Aligned_cols=173 Identities=14% Similarity=0.123 Sum_probs=113.6
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEEecCCCc--hHHHHHHHHhhcc----ccc----------ccCcchhHHHHHH
Q 013638 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF----CMF----------NDDIQGTAGVALA 305 (439)
Q Consensus 243 ~~g~~y~~~vdefv~av~~~~-P~~~IqfEDf~~~--naf~iL~ryr~~~----~~F----------NDDiQGTaaV~LA 305 (439)
.+..|...|.-.||..+.... |..-|-=+|++.. .---+.+.|+..- -|| .+--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 567788999999999999876 8888888899763 2234677776531 222 2333457777788
Q ss_pred HHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccc
Q 013638 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (439)
Q Consensus 306 gll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA 385 (439)
++-.+++..|.+|+. +||+|.|.|..|...|+.|.++ |. +=+-+.|++|-|.... .|+..+..|.
T Consensus 214 ~~~~~~~~~g~~l~g---~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~-Gld~~~l~~~ 278 (444)
T PRK14031 214 FLMEMLKTKGTDLKG---KVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD-GIDREKLDYI 278 (444)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-CCCHHHHHHH
Confidence 888888888888777 9999999999999999998765 43 2344699999887654 3544332211
Q ss_pred cc---c-CC-cCCC-----CCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 386 KD---P-GD-FMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 386 ~~---~-~~-~~~~-----~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
.. . +. .... ....+-.+ +-..+.|+||=+.. .+.+|++-++.+..
T Consensus 279 ~~~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a 333 (444)
T PRK14031 279 MELKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVA 333 (444)
T ss_pred HHHHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHh
Confidence 10 0 00 0000 00011112 22356888886665 68888888887744
No 31
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.88 E-value=0.5 Score=50.85 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=112.9
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEEecCCCch--HHHHHHHHhhc---c-cccc----------cCcchhHHHHHH
Q 013638 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKR---F-CMFN----------DDIQGTAGVALA 305 (439)
Q Consensus 243 ~~g~~y~~~vdefv~av~~~~-P~~~IqfEDf~~~n--af~iL~ryr~~---~-~~FN----------DDiQGTaaV~LA 305 (439)
.+..|-..|...||..+.+.. |+.-|-=.|++..- ---+.+.|+.- . .|+- +--..||-=++.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~ 222 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVY 222 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHH
Confidence 566778899999999998766 88888888988522 22356666642 1 1111 112237777778
Q ss_pred HHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEecccccccCCCCCChhhh--
Q 013638 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-- 382 (439)
Q Consensus 306 gll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~-lvDs~GLl~~~r~~L~~~k~-- 382 (439)
++-.+++..+.+|+. .||+|-|.|..|...|+.+.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 223 ~~~~~l~~~~~~l~G---k~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~-Gld~~~l~~ 286 (454)
T PTZ00079 223 FVLEVLKKLNDSLEG---KTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN-GFTKEKLAY 286 (454)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC-CCCHHHHHH
Confidence 888899988988888 9999999999999999988764 43 555 999999998875 3433221
Q ss_pred -------------ccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 383 -------------PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 383 -------------~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
.|+..... ....+-. .+-.++.||++=+.+ .+.+|++-++.+.+
T Consensus 287 l~~~k~~~~g~i~~~~~~~~~----a~~~~~~-~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~ 343 (454)
T PTZ00079 287 LMDLKNVKRGRLKEYAKHSST----AKYVPGK-KPWEVPCDIAFPCAT-QNEINLEDAKLLIK 343 (454)
T ss_pred HHHHHhhcCCcHHhhhhccCC----cEEeCCc-CcccCCccEEEeccc-cccCCHHHHHHHHH
Confidence 12110000 0000111 122367999998776 69999999998843
No 32
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.83 E-value=0.018 Score=60.76 Aligned_cols=120 Identities=15% Similarity=0.245 Sum_probs=67.2
Q ss_pred chHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 013638 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (439)
Q Consensus 276 ~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~e 355 (439)
..||+.=+|-|.+.-. |.++|.++. .|++...+.+.++++.|++|+|||.+|-.+|..+.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I------~~~~vSv~~--~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~-----~g~--- 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI------GHCPVSVAF--SAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTA-----LAP--- 205 (414)
T ss_pred HHHHHHHHHHHhccCC------CCCCcCHHH--HHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHH-----cCC---
Confidence 4566666666665211 223333321 222333333333444999999999999888887754 454
Q ss_pred hhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCC-CCCCHHHH
Q 013638 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVK 427 (439)
Q Consensus 356 eA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~-G~FteevV 427 (439)
++|+++.+. .++ -+.++..-+... .....+|.+++.. .|++|-+++.| -+||++.+
T Consensus 206 ---~~I~V~nRt----~~r------a~~La~~~~~~~-~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~ 262 (414)
T PRK13940 206 ---KQIMLANRT----IEK------AQKITSAFRNAS-AHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYV 262 (414)
T ss_pred ---CEEEEECCC----HHH------HHHHHHHhcCCe-EecHHHHHHHhcc--CCEEEECcCCCCeeECHHHh
Confidence 479988874 222 122222110000 0012347778887 99999988766 46787665
No 33
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.73 E-value=0.25 Score=44.92 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCCccCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChh
Q 013638 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (439)
Q Consensus 302 V~LAgll~A~r~~g~~l~dl~~~riv~~GAGs-AgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~ 380 (439)
.|..|++.-++..|.+++. ++|+++|.+. .|.-+|.+|. ++|. .+..++++
T Consensus 10 ~t~~a~~~ll~~~~~~~~g---k~v~VvGrs~~vG~pla~lL~-----~~ga-------tV~~~~~~------------- 61 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDG---KKVLVVGRSGIVGAPLQCLLQ-----RDGA-------TVYSCDWK------------- 61 (140)
T ss_pred cHHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHHH-----HCCC-------EEEEeCCC-------------
Confidence 4678888899999998888 9999999864 4445554443 2443 56666653
Q ss_pred hhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 381 k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.|+++. +|++|-..+.++.|+.|||+.
T Consensus 62 ----------------t~~l~~~v~~--ADIVvsAtg~~~~i~~~~ikp 92 (140)
T cd05212 62 ----------------TIQLQSKVHD--ADVVVVGSPKPEKVPTEWIKP 92 (140)
T ss_pred ----------------CcCHHHHHhh--CCEEEEecCCCCccCHHHcCC
Confidence 1248888998 999999999999999999873
No 34
>PLN02477 glutamate dehydrogenase
Probab=94.62 E-value=0.45 Score=50.56 Aligned_cols=170 Identities=20% Similarity=0.225 Sum_probs=109.3
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEEecCCCchH--HHHHHHHhhc----------cccc----ccCcchhHHHHHH
Q 013638 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----------FCMF----NDDIQGTAGVALA 305 (439)
Q Consensus 243 ~~g~~y~~~vdefv~av~~~~-P~~~IqfEDf~~~na--f~iL~ryr~~----------~~~F----NDDiQGTaaV~LA 305 (439)
++..|-..+...|+.++.... |..-|-=+|++..-. --+.++|+.- -|+. .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 456788889999999998876 665666788876422 2256777751 1221 2233447777788
Q ss_pred HHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEecccccccCCCCCChhhh-c
Q 013638 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-P 383 (439)
Q Consensus 306 gll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~-lvDs~GLl~~~r~~L~~~k~-~ 383 (439)
++-.+++..|.+|+. .||+|.|.|..|-++|++|.+. |. +|+ +.|++|-|+... .|+.... .
T Consensus 192 ~~~~~~~~~g~~l~g---~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~-GLD~~~L~~ 255 (410)
T PLN02477 192 ATEALLAEHGKSIAG---QTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN-GLDIPALRK 255 (410)
T ss_pred HHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC-CCCHHHHHH
Confidence 888888888887777 9999999999999999988653 43 566 899999998865 2332211 1
Q ss_pred cccccCCcCCC--CCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHH
Q 013638 384 FAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYF 430 (439)
Q Consensus 384 fA~~~~~~~~~--~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~M 430 (439)
+.+........ ....+-.|.+. .+.||||=+. .++.+|++-+..+
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i 302 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV 302 (410)
T ss_pred HHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc
Confidence 11100000000 01112333333 3788888666 4788888888764
No 35
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.60 E-value=0.092 Score=53.21 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=86.4
Q ss_pred HHHHHHHHHhC--Cc---eEEEEecCCCchHHHHHHHHhh--cccccccCcc--------hhHHHHHHHHHHHHHHhCCC
Q 013638 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RFCMFNDDIQ--------GTAGVALAGLLGTVRAQGLS 317 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~~~FNDDiQ--------GTaaV~LAgll~A~r~~g~~ 317 (439)
+||.+.+++.- |+ .++|+==-+.-+..++++...- .+=.||..-. +=.-+|-+|++.=++-.+.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~ 154 (285)
T PRK14191 75 AELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHIE 154 (285)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCCC
Confidence 56777777765 53 3666532222333444433221 1222222211 22346778888888888988
Q ss_pred ccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCC
Q 013638 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (439)
Q Consensus 318 l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~ 396 (439)
++. ++++++|.| ..|..+|.++... |. .+.+++++
T Consensus 155 l~G---k~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~----------------------------- 190 (285)
T PRK14191 155 IKG---KDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL----------------------------- 190 (285)
T ss_pred CCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC-----------------------------
Confidence 887 999999999 9999999998653 32 46666431
Q ss_pred CCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.+.++. +|++|...+.|+.+++++|+
T Consensus 191 t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1247888888 99999999999999999986
No 36
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.59 E-value=0.46 Score=50.97 Aligned_cols=168 Identities=17% Similarity=0.159 Sum_probs=112.5
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEEecCCCch--HHHHHHHHhhcc----------ccc----ccCcchhHHHHHH
Q 013638 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKRF----------CMF----NDDIQGTAGVALA 305 (439)
Q Consensus 243 ~~g~~y~~~vdefv~av~~~~-P~~~IqfEDf~~~n--af~iL~ryr~~~----------~~F----NDDiQGTaaV~LA 305 (439)
.+..|-..|...|+.++...+ |..-|-=+|++..- ---+.++|+.-. |+. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 566788899999999999987 77788888988532 223667777431 211 1233357777778
Q ss_pred HHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-ecccccccCCCCCChh----
Q 013638 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPA---- 380 (439)
Q Consensus 306 gll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lv-Ds~GLl~~~r~~L~~~---- 380 (439)
++..+++..+.+++. .||+|.|-|..|...|++|.. .|. +++-+ |++|-|+... .|+..
T Consensus 218 ~~~~~~~~~~~~l~g---~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~-GLD~~~L~~ 281 (445)
T PRK09414 218 FAEEMLKARGDSFEG---KRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE-GIDLEKLKE 281 (445)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 888888888888777 999999999999999999854 343 56655 9999998865 23322
Q ss_pred -hhc----cccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHH
Q 013638 381 -AAP----FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYF 430 (439)
Q Consensus 381 -k~~----fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~M 430 (439)
+.. ...-... .+ ....+.. .+..++.||||=++. .+.+|++-...+
T Consensus 282 ~k~~~~~~l~~~~~~-~~-~~~i~~~-~i~~~d~DVliPaAl-~n~It~~~a~~i 332 (445)
T PRK09414 282 IKEVRRGRISEYAEE-FG-AEYLEGG-SPWSVPCDIALPCAT-QNELDEEDAKTL 332 (445)
T ss_pred HHHhcCCchhhhhhh-cC-CeecCCc-cccccCCcEEEecCC-cCcCCHHHHHHH
Confidence 211 1000000 00 0011222 234567999997775 899999998888
No 37
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.46 E-value=0.14 Score=48.07 Aligned_cols=100 Identities=25% Similarity=0.350 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC
Q 013638 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (439)
Q Consensus 297 QGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~ 376 (439)
.||+--++-|++. .++..+.- .+++++|-|--|-|+|+.+..... ++.++|.+
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~G---k~vvV~GYG~vG~g~A~~lr~~Ga------------~V~V~e~D--------- 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAG---KRVVVIGYGKVGKGIARALRGLGA------------RVTVTEID--------- 55 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TT---SEEEEE--SHHHHHHHHHHHHTT-------------EEEEE-SS---------
T ss_pred cccchhHHHHHHh---cCceeeCC---CEEEEeCCCcccHHHHHHHhhCCC------------EEEEEECC---------
Confidence 4777777777774 57777777 999999999999999999877543 67777653
Q ss_pred CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 377 L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
|.+.-=|.- ..+ +..+++|+++. +|++|.+++...+++.|.++.|..
T Consensus 56 --Pi~alqA~~-dGf----~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mkd 102 (162)
T PF00670_consen 56 --PIRALQAAM-DGF----EVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMKD 102 (162)
T ss_dssp --HHHHHHHHH-TT-----EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-T
T ss_pred --hHHHHHhhh-cCc----EecCHHHHHhh--CCEEEECCCCccccCHHHHHHhcC
Confidence 222111111 011 12469999998 999999999888999999999865
No 38
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.21 E-value=0.08 Score=53.19 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=67.0
Q ss_pred cchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCC
Q 013638 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (439)
Q Consensus 296 iQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~ 375 (439)
+..+-+++=.++..+++..+..+.. .+++|+|+|.+|..+|+.+... |. +++++|++.-
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~g---k~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~~------ 185 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHG---SNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSSA------ 185 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCC---CEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCHH------
Confidence 3455556555666777777777777 9999999999999999988653 42 6888887421
Q ss_pred CCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 376 ~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
.+...+ .+ .... -...+|.++++. .|++|=+. ..++++++.++.|.+
T Consensus 186 ~~~~~~-~~--g~~~----~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k~ 232 (287)
T TIGR02853 186 DLARIT-EM--GLIP----FPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLPK 232 (287)
T ss_pred HHHHHH-HC--CCee----ecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCCC
Confidence 111110 00 0000 012347777776 88888654 236778888877754
No 39
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.18 E-value=0.2 Score=48.75 Aligned_cols=118 Identities=18% Similarity=0.286 Sum_probs=75.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC
Q 013638 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (439)
Q Consensus 297 QGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~ 376 (439)
.-||-=+..++-.+++..+..+.. .||+|.|.|..|.++|++|.+. |. +=+.+.|++|-+.....
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~---~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G- 72 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAG---ARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG- 72 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC-
Confidence 346666677777888888866666 9999999999999999988663 43 23559999999887652
Q ss_pred CChhh-hccccccCCcCCCC--CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHh
Q 013638 377 LDPAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFL 431 (439)
Q Consensus 377 L~~~k-~~fA~~~~~~~~~~--~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma 431 (439)
|+... ..+.+........+ ...+-.+ +-..+.||||=++ .++.+|++.+..+.
T Consensus 73 ld~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l~ 128 (227)
T cd01076 73 LDVPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRIK 128 (227)
T ss_pred CCHHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhce
Confidence 33221 11111100000000 0112233 3344789999777 47999999888764
No 40
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.84 E-value=0.17 Score=51.32 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCC
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGs-AgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L 377 (439)
=.-+|-.|++..++-.+.++.. .+++++|.+. .|..+|.+|... | ..+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~---------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEG---KNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF---------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc----------
Confidence 3466888999999999998888 9999999988 999999888652 3 256777642
Q ss_pred ChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.+++ +|++|-+.|.|+.+++++|+.
T Consensus 198 -------------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk~ 228 (287)
T PRK14176 198 -------------------TDDLKKYTLD--ADILVVATGVKHLIKADMVKE 228 (287)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCccccCHHHcCC
Confidence 1347777887 999998889999999998863
No 41
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.71 E-value=0.073 Score=47.27 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=57.2
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCC
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~ 396 (439)
.+.+|++.+++|+|||.+|-+++..+... |. ++|+++++. .+| .......|- ...+.. ..
T Consensus 6 ~~~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r--a~~l~~~~~--~~~~~~-~~ 65 (135)
T PF01488_consen 6 KFGDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER--AEALAEEFG--GVNIEA-IP 65 (135)
T ss_dssp HHSTGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH--HHHHHHHHT--GCSEEE-EE
T ss_pred hcCCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH--HHHHHHHcC--ccccce-ee
Confidence 33445559999999999999888777663 54 589999973 222 112222220 000000 01
Q ss_pred CCCHHHHhccCCCcEEEeccCCC-CCCCHHHHHHHh
Q 013638 397 GASLLEVVRKVKPHVLLGLSGVG-GVFNEEVKTYFL 431 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~S~~~-G~FteevV~~Ma 431 (439)
..++.+.+.. .|++|-+++.+ -.++++.++...
T Consensus 66 ~~~~~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~ 99 (135)
T PF01488_consen 66 LEDLEEALQE--ADIVINATPSGMPIITEEMLKKAS 99 (135)
T ss_dssp GGGHCHHHHT--ESEEEE-SSTTSTSSTHHHHTTTC
T ss_pred HHHHHHHHhh--CCeEEEecCCCCcccCHHHHHHHH
Confidence 2346677777 99999988755 378998887643
No 42
>PRK14030 glutamate dehydrogenase; Provisional
Probab=93.70 E-value=1.1 Score=48.35 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=111.6
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CceEEEEecCCCchH--HHHHHHHhhc----ccccc----------cCcchhHHHHHH
Q 013638 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----FCMFN----------DDIQGTAGVALA 305 (439)
Q Consensus 243 ~~g~~y~~~vdefv~av~~~~-P~~~IqfEDf~~~na--f~iL~ryr~~----~~~FN----------DDiQGTaaV~LA 305 (439)
.+..|...|.-.||+.+.+.. |+.-|-=+|++..-. --+++.|+.- ..++. +--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 456688899999999999644 888788888885331 2256777752 12221 111237777788
Q ss_pred HHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhc--
Q 013638 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP-- 383 (439)
Q Consensus 306 gll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~-- 383 (439)
++-.+++..|.+|+. .||+|-|.|..|...|+.|.++ |. +=+-+.|++|-|++.. .|+..+..
T Consensus 214 ~~~~~~~~~g~~l~g---~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~-Gld~~~l~~l 278 (445)
T PRK14030 214 FVHQMLETKGIDIKG---KTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD-GISGEKIDYM 278 (445)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC-CCCHHHHHHH
Confidence 888889988888777 9999999999999999998654 44 3577789999988754 34433210
Q ss_pred --ccccc--------CCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHh
Q 013638 384 --FAKDP--------GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFL 431 (439)
Q Consensus 384 --fA~~~--------~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma 431 (439)
+-... ....+ ....+-.+ +-.++.||||=+.. .+.+|++-++.+.
T Consensus 279 ~~~k~~~~~~~~~~~~~~~g-a~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~ 333 (445)
T PRK14030 279 LELRASGNDIVAPYAEKFPG-STFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLI 333 (445)
T ss_pred HHHHHhcCccHHHHHhcCCC-CEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHH
Confidence 00000 00000 00011122 22467899997765 6999999998883
No 43
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.69 E-value=0.16 Score=47.12 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
||+.+++.+..+++..|..+++ .+++++|+ |..|..+|..+... | .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~---~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKG---KTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---CEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 6777788888888877888888 99999997 99998888877642 3 368888764
No 44
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.64 E-value=0.18 Score=51.10 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGs-AgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-+|++..++..+.++.. .+++++|-|- .|..+|.+|... | ..+.+|+|+
T Consensus 139 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVG~Pla~lL~~~-----~-------atVtv~hs~----------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYG---LNAVVVGASNIVGRPMSLELLLA-----G-------CTVTVCHRF----------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CeEEEEECC-----------
Confidence 466888999999999998888 9999999988 999999988642 3 257777764
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.+.++. +|++|-+.+.|+.|+.++|+
T Consensus 193 ------------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk 222 (285)
T PRK10792 193 ------------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK 222 (285)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC
Confidence 1237777777 88888888888888888776
No 45
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.63 E-value=0.11 Score=51.95 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 305 Agll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.|++.+++..+..++. ++++++|||.||.++|..+... |. ++|+++|+.
T Consensus 112 ~G~~~~l~~~~~~~~~---k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~ 160 (284)
T PRK12549 112 SGFAESFRRGLPDASL---ERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD 160 (284)
T ss_pred HHHHHHHHhhccCccC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 3477788755555566 8999999999999998887653 54 479999984
No 46
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=93.62 E-value=0.37 Score=48.08 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEecccccccCCCC
Q 013638 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKN 376 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~-lvDs~GLl~~~r~~ 376 (439)
.||-=+..++-.+++..+.+++. .||+|-|-|..|.+.|++|.+. |. +++ +.|++|-++... .
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~-G 79 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKG---KRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD-G 79 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC-C
Confidence 36655667777888888888777 9999999999999999998663 43 555 999999998865 2
Q ss_pred CChhhhc--ccc----cc--CCcC-C--CCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHH
Q 013638 377 LDPAAAP--FAK----DP--GDFM-G--LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYF 430 (439)
Q Consensus 377 L~~~k~~--fA~----~~--~~~~-~--~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~M 430 (439)
|+..+.. +.+ .. .... . .....+-.| +-..+.||||=+.. .+.+|++-+..+
T Consensus 80 ld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~-~~~~~~DIliPcAl-~~~I~~~na~~i 142 (254)
T cd05313 80 FTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK-PWEVPCDIAFPCAT-QNEVDAEDAKLL 142 (254)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcc-hhcCCCcEEEeccc-cccCCHHHHHHH
Confidence 3322110 000 00 0000 0 000112223 22457999997764 799999999988
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.55 E-value=0.16 Score=52.82 Aligned_cols=222 Identities=14% Similarity=0.211 Sum_probs=110.9
Q ss_pred ChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC--CcccccchhhhHHHhhcCCCCCceecEEeeccCC----chhc
Q 013638 156 DKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV--QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTN----NQKL 229 (439)
Q Consensus 156 d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~--~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTn----n~~L 229 (439)
-|+++.++.. .+.+|+|=+.-+.-.|+-|--- .|-.|......+|. + .|++=|..= =+.+
T Consensus 19 ~P~~v~~l~~----~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~--~--------dii~~Vk~p~~~~~~~~ 84 (370)
T TIGR00518 19 TPAGVAELTS----RGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD--A--------ELVLKVKEPLPEEYGYL 84 (370)
T ss_pred CHHHHHHHHh----CCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc--C--------CEEEEeCCCCHHHHhhc
Confidence 4556666665 3578999888776777777553 35555544445552 1 233333211 0122
Q ss_pred ccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHHHHHHHhhccccc--ccCcchhHHHHHHHH
Q 013638 230 LEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMF--NDDIQGTAGVALAGL 307 (439)
Q Consensus 230 l~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~F--NDDiQGTaaV~LAgl 307 (439)
..+..++++=|+=-. .+.+++..+.-. ..|-+|-+.. -+.++++| +--+-|--||.+|+-
T Consensus 85 ~~g~~l~~~~~~a~~--------~~~~~~l~~~~~-t~i~~e~i~~---------~~~~~~~l~~~~~iaG~~av~~aa~ 146 (370)
T TIGR00518 85 RHGQILFTYLHLAAE--------RALTDALLDSGT-TAIAYETVQT---------ADGALPLLAPMSEVAGRLAAQVGAY 146 (370)
T ss_pred CCCcEEEEEeccCCC--------HHHHHHHHHcCC-eEEEeeeeec---------cCCCCccccchhHHHHHHHHHHHHH
Confidence 334445555444200 122222222111 2444444421 01122222 122445455544443
Q ss_pred HHHHHHhC-C-----CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhh
Q 013638 308 LGTVRAQG-L-----SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (439)
Q Consensus 308 l~A~r~~g-~-----~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k 381 (439)
..- |..+ + ....+...+++|+|+|.+|.++|+.+... |. +++++|++- .+ +....
T Consensus 147 ~~~-~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~~----~~--~~~l~ 207 (370)
T TIGR00518 147 HLE-KTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDINI----DR--LRQLD 207 (370)
T ss_pred HhH-hhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECCH----HH--HHHHH
Confidence 222 2222 1 11123348999999999999999887653 42 588888741 11 11111
Q ss_pred hccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCC-----CCCCCHHHHHHHhc
Q 013638 382 APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVKTYFLC 432 (439)
Q Consensus 382 ~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~-----~G~FteevV~~Ma~ 432 (439)
..|...... . ..+...|.++++. .|++|.+... |.++|++.++.|.+
T Consensus 208 ~~~g~~v~~-~-~~~~~~l~~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk~ 259 (370)
T TIGR00518 208 AEFGGRIHT-R-YSNAYEIEDAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMKP 259 (370)
T ss_pred HhcCceeEe-c-cCCHHHHHHHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCCC
Confidence 122111000 0 0012348888886 9999987532 56699999999854
No 48
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.39 E-value=0.3 Score=46.41 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHh--CCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC
Q 013638 299 TAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (439)
Q Consensus 299 TaaV~LAgll~A~r~~--g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~ 376 (439)
||-=+..++-.+++.. +.+++. .+|+|.|.|..|..+|+.+.+. |. +++.+|++. +.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~g---k~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~------~~ 63 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEG---KTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE------EA 63 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH------HH
Confidence 5555556667777775 777777 9999999999999999888664 42 688888651 11
Q ss_pred CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHh
Q 013638 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFL 431 (439)
Q Consensus 377 L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma 431 (439)
+...+..|. .. .-+..+... .+.|+++=++. .+++|++.++.|.
T Consensus 64 ~~~~~~~~g---~~------~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~ 107 (200)
T cd01075 64 VARAAELFG---AT------VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQLK 107 (200)
T ss_pred HHHHHHHcC---CE------EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHcC
Confidence 222222221 00 011223232 25888885554 6889999888874
No 49
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.16 E-value=0.25 Score=50.53 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.-+|-+|++.=++-.|.++.. ++|+|+|.| ..|..+|.+|... |. .+++++++
T Consensus 139 ~PcTp~aii~lL~~~~i~l~G---k~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~ 192 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTG---KHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR 192 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 355778888888889988877 999999996 9999999998764 42 57777653
No 50
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.13 E-value=0.24 Score=50.27 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhH-HHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsA-giGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-.|++.-++-.+.++.. ++++++|.|.- |..+|.+|... |. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~----------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRG---AHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK----------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC-----------
Confidence 456788889999999998888 99999999987 99999988652 32 56665431
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.++.|++++++.
T Consensus 192 ------------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik~ 222 (285)
T PRK14189 192 ------------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVKP 222 (285)
T ss_pred ------------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1347777887 899998888889999888763
No 51
>PRK08328 hypothetical protein; Provisional
Probab=92.87 E-value=0.056 Score=52.48 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 013638 281 TLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (439)
Q Consensus 281 iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~ 360 (439)
-++||..++..|..+.| .+|.+ .||+++|+|..|..+|..|+.+ |+ ++
T Consensus 6 ~~~ry~Rq~~~~g~~~q------------------~~L~~---~~VlIiG~GGlGs~ia~~La~~-----Gv------g~ 53 (231)
T PRK08328 6 ELERYDRQIMIFGVEGQ------------------EKLKK---AKVAVVGVGGLGSPVAYYLAAA-----GV------GR 53 (231)
T ss_pred HHHHHhhHHHhcCHHHH------------------HHHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CE
Confidence 35788887766654322 23445 8999999999999999998776 44 68
Q ss_pred EEEEecccccccC--CC------CCCh-hhhccc----cccCC-c--C---CCCCCCCHHHHhccCCCcEEEeccCCCCC
Q 013638 361 FFLLDKDGLITKE--RK------NLDP-AAAPFA----KDPGD-F--M---GLREGASLLEVVRKVKPHVLLGLSGVGGV 421 (439)
Q Consensus 361 i~lvDs~GLl~~~--r~------~L~~-~k~~fA----~~~~~-~--~---~~~~~~sL~eaV~~vkPtvLIG~S~~~G~ 421 (439)
|.++|.+=+=..+ |. ++-. .|..-| +.-++ . . ..-...++.+.++. .|++|-+.-. .
T Consensus 54 i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~--~D~Vid~~d~--~ 129 (231)
T PRK08328 54 ILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKG--VDVIVDCLDN--F 129 (231)
T ss_pred EEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhc--CCEEEECCCC--H
Confidence 9999976321111 11 1111 111111 11111 0 0 00011235556666 7888876542 3
Q ss_pred CCHHHHHHHhccCCCCCC
Q 013638 422 FNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 422 FteevV~~Ma~~~~~pi~ 439 (439)
-++.++..++....+|+|
T Consensus 130 ~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 130 ETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 466777777777777754
No 52
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.52 E-value=0.2 Score=50.35 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 305 Agll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.|++.+++..+..++. .+++++|||-|+.+|+-.+.. .|. ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~---k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 3578888877777777 899999999998777655543 465 589999984
No 53
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.48 E-value=0.47 Score=45.90 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCC---------CccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccc
Q 013638 302 VALAGLLGTVRAQGL---------SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (439)
Q Consensus 302 V~LAgll~A~r~~g~---------~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~ 371 (439)
+|-.|++.=++..+. +++. ++++++|-+ ..|.-+|.||.. +| ..++.||++|...
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~G---K~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~ 99 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYG---KTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQV 99 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccc
Confidence 345556665665543 5655 999999986 568888877754 23 3689999999887
Q ss_pred cCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCC-CCHHHHHH
Q 013638 372 KERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVKTY 429 (439)
Q Consensus 372 ~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~-FteevV~~ 429 (439)
..+..-..|. ..+. . ....+|.|.++. +|++|-..+.++. ++.|||+.
T Consensus 100 ~~~~~~~~hs--~t~~-~-----~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik~ 148 (197)
T cd01079 100 FTRGESIRHE--KHHV-T-----DEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLKD 148 (197)
T ss_pred cccccccccc--cccc-c-----chhhHHHHHhhh--CCEEEEccCCCCCccCHHHcCC
Confidence 6543211111 0000 0 001248899999 9999999999998 99999973
No 54
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.26 E-value=0.37 Score=48.84 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCC
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L 377 (439)
=.-+|-+|++.=++-.+.+++. ++++++|.+ ..|.-+|.++... |. .+.++.++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~---------- 190 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKG---KDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF---------- 190 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC----------
Confidence 3456788888888888988887 999999998 8899999888542 32 34444442
Q ss_pred ChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.|+.+||+.
T Consensus 191 -------------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 221 (281)
T PRK14183 191 -------------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVKE 221 (281)
T ss_pred -------------------CcCHHHHHhh--CCEEEEecCcccccCHHHcCC
Confidence 1347788888 999999999999999999874
No 55
>PLN02928 oxidoreductase family protein
Probab=92.01 E-value=0.75 Score=47.49 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHHHHh------------CCC-ccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEE
Q 013638 297 QGTAGVALAGLLGTVRAQ------------GLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFL 363 (439)
Q Consensus 297 QGTaaV~LAgll~A~r~~------------g~~-l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~l 363 (439)
+.+|--+++.+++.+|-. +.+ -.+|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 345666677777666632 011 1245559999999999999999998754 43 6888
Q ss_pred EecccccccCCC-CCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEecc----CCCCCCCHHHHHHHhc
Q 013638 364 LDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVKTYFLC 432 (439)
Q Consensus 364 vDs~GLl~~~r~-~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S----~~~G~FteevV~~Ma~ 432 (439)
+|+.. ..... .+. .+......... .. ....+|.|+++. .|+++-.- ...++|+++.+..|.+
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk~ 254 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVD-EK-GGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMKK 254 (347)
T ss_pred ECCCC--Chhhhhhhc-ccccccccccc-cc-CcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCCC
Confidence 88742 01000 000 00011000000 00 123478999988 88888542 1247888888888864
No 56
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.97 E-value=0.069 Score=48.97 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=51.2
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc-------------ccccCCCCCChhhhcccccc
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG-------------LITKERKNLDPAAAPFAKDP 388 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G-------------Ll~~~r~~L~~~k~~fA~~~ 388 (439)
...+|||.|+|.+|.|.|+.+..... ++..+|..= +.+.....+.. +.|++..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa------------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~ 84 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA------------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKAD 84 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC------------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchhh
Confidence 34899999999999999998877533 455555521 11100000000 0022210
Q ss_pred CCcCCCCCCCCHHHHhccCCCcEEEeccC-----CCCCCCHHHHHHHhc
Q 013638 389 GDFMGLREGASLLEVVRKVKPHVLLGLSG-----VGGVFNEEVKTYFLC 432 (439)
Q Consensus 389 ~~~~~~~~~~sL~eaV~~vkPtvLIG~S~-----~~G~FteevV~~Ma~ 432 (439)
..-........|.+.++. .|++|+..- .|-+||+|.++.|.+
T Consensus 85 ~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~~ 131 (168)
T PF01262_consen 85 YYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMKP 131 (168)
T ss_dssp CHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSST
T ss_pred hhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccCC
Confidence 000000112358889988 899997433 356999999999985
No 57
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.94 E-value=0.34 Score=49.07 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCC
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L 377 (439)
=.-+|-.|++.=++..+.+++. .+++++|.+ .-|..+|.++... | ..+..++|+
T Consensus 131 ~~PcTp~av~~ll~~~~i~l~G---k~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~---------- 185 (279)
T PRK14178 131 FAPCTPNGIMTLLHEYKISIAG---KRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK---------- 185 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCCCC---CEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC----------
Confidence 3456778888888888988887 999999998 8888888877543 2 256666652
Q ss_pred ChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.|.++. +|++|++.+.++.+|+++|+
T Consensus 186 -------------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 -------------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred -------------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1248889988 99999999999999999984
No 58
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=91.89 E-value=0.28 Score=52.24 Aligned_cols=167 Identities=23% Similarity=0.313 Sum_probs=95.5
Q ss_pred hhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHH
Q 013638 201 LDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFE 280 (439)
Q Consensus 201 l~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~ 280 (439)
-+||..++|+| -+=+|- .++|- +.=+.|-.|.+..+-+..+ ++--..||.
T Consensus 94 ~HLfrVAsGLD-------SmVlGE--~QILG------------------QVK~Ay~~a~~~g~~g~~L---~~lFqkAi~ 143 (414)
T COG0373 94 RHLFRVASGLD-------SLVLGE--TQILG------------------QVKDAYAKAQENGTLGKVL---NRLFQKAIS 143 (414)
T ss_pred HHHHHHhccch-------hhhcCc--HHHHH------------------HHHHHHHHHHHcCCchHHH---HHHHHHHHH
Confidence 47899999999 334552 11111 2224455555544422111 222356777
Q ss_pred HHHHHhhcccccccCcchhHHHHH--HHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc
Q 013638 281 TLERYRKRFCMFNDDIQGTAGVAL--AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (439)
Q Consensus 281 iL~ryr~~~~~FNDDiQGTaaV~L--Agll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~ 358 (439)
.=+|.|.+- .=|.++|.+ |++--|-++.| +|++.+++|+|||..|-.+|+.|... |.
T Consensus 144 ~gKrvRseT------~I~~~~VSi~saAv~lA~~~~~----~L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 144 VGKRVRSET------GIGKGAVSISSAAVELAKRIFG----SLKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHhhccc------CCCCCccchHHHHHHHHHHHhc----ccccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 778888751 013444444 33334444444 34449999999999999998888765 44
Q ss_pred CeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCC-CCCCHHHHHHHhc
Q 013638 359 NKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVKTYFLC 432 (439)
Q Consensus 359 ~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~-G~FteevV~~Ma~ 432 (439)
++|+++.+ |..| -+.+|+.-.- .. .....|.+.+.. .||+|-.++.| -+++.+.++.-.+
T Consensus 203 ~~i~IaNR----T~er------A~~La~~~~~-~~-~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~ 263 (414)
T COG0373 203 KKITIANR----TLER------AEELAKKLGA-EA-VALEELLEALAE--ADVVISSTSAPHPIITREMVERALK 263 (414)
T ss_pred CEEEEEcC----CHHH------HHHHHHHhCC-ee-ecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHh
Confidence 58988876 2222 1233332110 00 012346777777 99999765544 6788888876544
No 59
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.88 E-value=0.25 Score=49.67 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=40.9
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++=||=|-. |++.+++..+..+++ .+++++|||-||-+|+-.+.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~~--------Gf~~~L~~~~~~~~~---k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDVS--------GFGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCHH--------HHHHHHHhcCcCcCC---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 445555654 477888754445666 899999999999988776654 454 589999873
No 60
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=91.84 E-value=0.63 Score=43.39 Aligned_cols=84 Identities=15% Similarity=0.282 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
--+|-.|++.-++..+.+++. .+++++|.+ ..|.-+|.+|... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~G---k~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~----------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEG---KKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK----------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT----EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT-----------
T ss_pred cCCCHHHHHHHHHhcCCCCCC---CEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC-----------
Confidence 345778888888888888887 999999998 4888888877653 22 35555542
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.++.+||+.
T Consensus 70 ------------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 ------------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp ------------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred ------------------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1348888887 999999999999999999874
No 61
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.79 E-value=0.45 Score=48.25 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-.|++.-++-.+.+++. ++++++|.+ ..|.-+|.+|.. .| ..+++|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~----------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISG---KHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK----------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-----------
Confidence 456778888889999998888 999999975 678888888754 23 246666541
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.+.++. +|++|.+.+.|+.|++++|+
T Consensus 192 ------------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 2358899998 99999999999999999996
No 62
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.77 E-value=0.21 Score=43.85 Aligned_cols=102 Identities=15% Similarity=0.222 Sum_probs=59.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc----ccCC
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGD 390 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~----~~~~ 390 (439)
++||+++|+|+-|.-+|+.|+.+.+ ++|.++|.+=+=..+ |. ++...|...++ ..++
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----------~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np 70 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----------GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP 70 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----------SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----------CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC
Confidence 4899999999999999999988744 699999997554333 21 11122222221 1111
Q ss_pred cC---CCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 391 FM---GLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 391 ~~---~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+- ..+ ....+.+.++. .|++|.++.. .=.+..+..++....+|+|
T Consensus 71 ~~~v~~~~~~~~~~~~~~~~~~--~d~vi~~~d~--~~~~~~l~~~~~~~~~p~i 121 (135)
T PF00899_consen 71 DVEVEAIPEKIDEENIEELLKD--YDIVIDCVDS--LAARLLLNEICREYGIPFI 121 (135)
T ss_dssp TSEEEEEESHCSHHHHHHHHHT--SSEEEEESSS--HHHHHHHHHHHHHTT-EEE
T ss_pred ceeeeeeecccccccccccccC--CCEEEEecCC--HHHHHHHHHHHHHcCCCEE
Confidence 10 000 11235566766 8999987752 3334466667777777754
No 63
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.76 E-value=0.34 Score=42.69 Aligned_cols=49 Identities=22% Similarity=0.510 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 305 Agll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.|+.+|++..+..++. .+++|+|+|..|..+|+.+.+. |. .+++++|+.
T Consensus 4 ~g~~~a~~~~~~~~~~---~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~ 52 (155)
T cd01065 4 LGFVRALEEAGIELKG---KKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT 52 (155)
T ss_pred HHHHHHHHhhCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 5889999988877777 9999999998888888777542 31 468888864
No 64
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.75 E-value=0.24 Score=53.95 Aligned_cols=94 Identities=21% Similarity=0.325 Sum_probs=51.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCC-------C-----hhhhccccccCC-
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL-------D-----PAAAPFAKDPGD- 390 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L-------~-----~~k~~fA~~~~~- 390 (439)
.|++|+|||.+|++.+...... |. +++.+|.+----.--+.+ + .....|++...+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l-----GA-------~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL-----GA-------IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchh
Confidence 7999999999999987665443 42 477787631100000000 0 011112221110
Q ss_pred cCCCCCCCCHHHHhccCCCcEEEeccCCCC-----CCCHHHHHHHhc
Q 013638 391 FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVKTYFLC 432 (439)
Q Consensus 391 ~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G-----~FteevV~~Ma~ 432 (439)
+.. .....+.+.++. +|++|.+++.|| +++++.++.|.+
T Consensus 234 ~~~-~~~~~~~~~~~g--aDVVIetag~pg~~aP~lit~~~v~~mkp 277 (509)
T PRK09424 234 FIK-AEMALFAEQAKE--VDIIITTALIPGKPAPKLITAEMVASMKP 277 (509)
T ss_pred HHH-HHHHHHHhccCC--CCEEEECCCCCcccCcchHHHHHHHhcCC
Confidence 000 000112233333 999999999876 779999999975
No 65
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=91.67 E-value=0.29 Score=48.87 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=62.4
Q ss_pred cccccccCcchhHHHHHHHHHHHHHHhCC--CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEe
Q 013638 288 RFCMFNDDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLD 365 (439)
Q Consensus 288 ~~~~FNDDiQGTaaV~LAgll~A~r~~g~--~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvD 365 (439)
++.=||=|..| ++.+++-.+. .+++ ++++++|||.||-+|+..+.+ .|. ++|++++
T Consensus 99 ~l~G~NTD~~G--------~~~~l~~~~~~~~~~~---k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~n 156 (282)
T TIGR01809 99 IWKGDNTDWDG--------IAGALANIGKFEPLAG---FRGLVIGAGGTSRAAVYALAS-----LGV------TDITVIN 156 (282)
T ss_pred cEEEecCCHHH--------HHHHHHhhCCccccCC---ceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEe
Confidence 35557777655 7778876553 4566 999999999998888776654 455 5899998
Q ss_pred cccccccCC-CCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHH
Q 013638 366 KDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVK 427 (439)
Q Consensus 366 s~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV 427 (439)
+. .+| ..|.+ .|.... ..........+.+++.. +|++|.++..+-.++.+.+
T Consensus 157 Rt----~~ka~~La~---~~~~~~-~~~~~~~~~~~~~~~~~--~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 157 RN----PDKLSRLVD---LGVQVG-VITRLEGDSGGLAIEKA--AEVLVSTVPADVPADYVDL 209 (282)
T ss_pred CC----HHHHHHHHH---HhhhcC-cceeccchhhhhhcccC--CCEEEECCCCCCCCCHHHh
Confidence 73 222 11211 111000 00000000123344444 8999998876655665544
No 66
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.59 E-value=0.26 Score=53.76 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=65.6
Q ss_pred CcchhHHHHHHHHHHHHHHhCC--CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc
Q 013638 295 DIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (439)
Q Consensus 295 DiQGTaaV~LAgll~A~r~~g~--~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~ 372 (439)
-|.|-.||..|+=.-.-...|. .+..+...|++|+|+|.+|+..+..+... |. +++.+|.+.-...
T Consensus 134 ~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rle 201 (511)
T TIGR00561 134 NIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVKE 201 (511)
T ss_pred HHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHHH
Confidence 4566666665543332222221 11112237999999999999987776553 32 4777887653211
Q ss_pred CCCCCCh------------hhhccccccCC-cCCCCCCCCHHHHhccCCCcEEEeccCCC-----CCCCHHHHHHHhcc
Q 013638 373 ERKNLDP------------AAAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVG-----GVFNEEVKTYFLCF 433 (439)
Q Consensus 373 ~r~~L~~------------~k~~fA~~~~~-~~~~~~~~sL~eaV~~vkPtvLIG~S~~~-----G~FteevV~~Ma~~ 433 (439)
--..+.. ...-||+...+ .. ..+..-+.|.++. .|++|++.-+| -++|+|+|+.|.+.
T Consensus 202 ~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~-~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKpG 277 (511)
T TIGR00561 202 QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFI-AAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKAG 277 (511)
T ss_pred HHHHcCCeEEeccccccccccccceeecCHHHH-HHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence 0001100 00112221100 00 0001115566766 99999998444 46999999999764
No 67
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.37 E-value=0.5 Score=47.94 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=81.9
Q ss_pred HHHHHHHHHhC--Cc---eEEEEecCCCchHHHHHHHHhh--cccccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 013638 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~~~FNDDi--------QGTaaV~LAgll~A~r~~g~~ 317 (439)
+||++.+++.- |+ .++|+==...-+..++++...- .+=.||..- .+=.-+|-+|++.=++-.|.+
T Consensus 76 ~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 155 (284)
T PRK14179 76 EELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVE 155 (284)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCC
Confidence 66777777764 54 2666432222333344433221 122222111 123456777888888888998
Q ss_pred ccCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCC
Q 013638 318 LTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (439)
Q Consensus 318 l~dl~~~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~ 396 (439)
+.. .+++|+|. |..|..+|.+|..+ |. .+.++.++
T Consensus 156 l~G---k~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~----------------------------- 191 (284)
T PRK14179 156 LEG---KHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR----------------------------- 191 (284)
T ss_pred CCC---CEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-----------------------------
Confidence 887 99999999 99999999998764 43 34444221
Q ss_pred CCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.++++. +|++|-..+.++.+++++++
T Consensus 192 t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1247777777 88888887778888887755
No 68
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.26 E-value=0.89 Score=47.82 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.|=-+++.+++..|..|..+.+ .++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~g---ktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAE---RTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCc---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3445688899888888887777 9999999999999999988764 43 6888886
No 69
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.95 E-value=0.38 Score=48.11 Aligned_cols=58 Identities=19% Similarity=0.414 Sum_probs=40.4
Q ss_pred cccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 288 RFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 288 ~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++.-||-| ..|++.+++..+..++. ++++|+|||-||.+||..+. +.|. ++|+++++.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~---k~vlI~GAGGagrAia~~La-----~~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKG---KKLTVIGAGGAATAIQVQCA-----LDGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHH-----HCCC------CEEEEEeCC
Confidence 35566777 34577888766666666 89999999866666655443 3565 479999874
No 70
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.76 E-value=0.73 Score=46.83 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCCh
Q 013638 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (439)
Q Consensus 301 aV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~ 379 (439)
-+|-.|++.=++-.+.++.. ++++++|.+ ..|..+|.+|.. .| ..+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~------------ 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTG---KNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK------------ 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 44667777778888888877 999999975 678888888754 23 246666642
Q ss_pred hhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 380 ~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.+++ +|++|...+.|+.++.|+|+.
T Consensus 193 -----------------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 193 -----------------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred -----------------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcCC
Confidence 2358888888 999999999999999999874
No 71
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.72 E-value=0.74 Score=46.61 Aligned_cols=128 Identities=12% Similarity=0.197 Sum_probs=85.6
Q ss_pred HHHHHHHHHhC--Cc---eEEEE---ecCCCchHHHHHHHHhh--cccccccCcch--------hHHHHHHHHHHHHHHh
Q 013638 253 DEFMEAVHARW--PK---AIVQF---EDFQMKWAFETLERYRK--RFCMFNDDIQG--------TAGVALAGLLGTVRAQ 314 (439)
Q Consensus 253 defv~av~~~~--P~---~~Iqf---EDf~~~naf~iL~ryr~--~~~~FNDDiQG--------TaaV~LAgll~A~r~~ 314 (439)
+|+++.+++.- |+ .++|+ +.+.. .++++...- .+=.||..-+| =.-+|-+|++.=++..
T Consensus 76 ~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~---~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~ 152 (278)
T PRK14172 76 EDLINEIEELNKDNNVHGIMLQLPLPKHLDE---KKITNKIDANKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSL 152 (278)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCH---HHHHhccCcccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHh
Confidence 56777777774 54 36666 34433 333333221 12222222222 2456788888888999
Q ss_pred CCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCC
Q 013638 315 GLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG 393 (439)
Q Consensus 315 g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~ 393 (439)
+.+++. ++++++|.+ ..|..+|.||.. .|. .+.+|+|+
T Consensus 153 ~i~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------------------- 191 (278)
T PRK14172 153 NIDIEG---KEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------------------- 191 (278)
T ss_pred CCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------------------
Confidence 998888 999999975 678888888754 232 46666652
Q ss_pred CCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 394 ~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.|++|+|+.
T Consensus 192 ---T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 192 ---TKNLKEVCKK--ADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred ---CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1348888888 999999999999999999874
No 72
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.47 E-value=0.75 Score=46.72 Aligned_cols=131 Identities=12% Similarity=0.187 Sum_probs=85.8
Q ss_pred HHHHHHHHHhC--Cc---eEEEEecCCCchHHHHHHHHhh--cccccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 013638 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~~~FNDDi--------QGTaaV~LAgll~A~r~~g~~ 317 (439)
+||++.+.+.- |+ .++|+==.+.-+..++++...- .+=+||..- .+=.-+|-+|++.=++..|.+
T Consensus 75 ~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~ 154 (284)
T PRK14170 75 EKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQ 154 (284)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777764 54 3667643333344444443321 122222111 223456778888888888988
Q ss_pred ccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCC
Q 013638 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (439)
Q Consensus 318 l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~ 396 (439)
+.. ++++++|.+ ..|.-+|.++.. .|. .+.+|.|+
T Consensus 155 l~G---k~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~----------------------------- 190 (284)
T PRK14170 155 IEG---KRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR----------------------------- 190 (284)
T ss_pred CCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------------------------
Confidence 877 999999985 578888887754 232 46656442
Q ss_pred CCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.|++++|+.
T Consensus 191 T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 191 TKDLPQVAKE--ADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 2348888888 999999999999999999874
No 73
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.35 E-value=0.95 Score=46.18 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=84.5
Q ss_pred HHHHHHHHHhC--Cc---eEEEEecCCCchHHHHHHHHhh--cccccccCc----------chhHHHHHHHHHHHHHHhC
Q 013638 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RFCMFNDDI----------QGTAGVALAGLLGTVRAQG 315 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~~~FNDDi----------QGTaaV~LAgll~A~r~~g 315 (439)
+||++.+++.- |+ .++|+==.+.-|..++++...- .+=.||..- .+=.-+|.+|++.=++..+
T Consensus 75 ~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~ 154 (295)
T PRK14174 75 EHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYN 154 (295)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhC
Confidence 45666666663 53 3666543334444444443221 122222211 1123356667888888888
Q ss_pred CCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCC
Q 013638 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~ 394 (439)
.+++. ++++|+|.+ ..|.-+|.++.+.+. +.| ..+..+.++
T Consensus 155 i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------atVt~~hs~--------------------------- 196 (295)
T PRK14174 155 IETKG---KHCVVVGRSNIVGKPMANLMLQKLK-ESN-------CTVTICHSA--------------------------- 196 (295)
T ss_pred CCCCC---CEEEEECCCCcchHHHHHHHHhccc-cCC-------CEEEEEeCC---------------------------
Confidence 88777 999999985 578888888865322 112 245554431
Q ss_pred CCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 395 ~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.+.++. +|++|+..+.++.|++++|+
T Consensus 197 --t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 --TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred --chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 2348899998 99999999999999999995
No 74
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.29 E-value=0.51 Score=46.83 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=36.2
Q ss_pred HHHHHHHHH-hCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 305 AGLLGTVRA-QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 305 Agll~A~r~-~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.|++++++. .+..++. .+++++|||.+|-+++..+.. .|. .+|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~---k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKG---KRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCC---CEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 446777764 4566666 999999999888888777664 354 479999884
No 75
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.26 E-value=0.66 Score=47.15 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=85.2
Q ss_pred HHHHHHHHHhC--Cc---eEEEEecCCCchHHHHHHHHh--hcccccccCc--------chhHHHHHHHHHHHHHHhCCC
Q 013638 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYR--KRFCMFNDDI--------QGTAGVALAGLLGTVRAQGLS 317 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr--~~~~~FNDDi--------QGTaaV~LAgll~A~r~~g~~ 317 (439)
+||.+.+++.- |+ .++|+==...-+..++++.-. +.+=.||.-- .+=.-+|-+|++.=++..+.+
T Consensus 75 ~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i~ 154 (286)
T PRK14184 75 EELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYGLS 154 (286)
T ss_pred HHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 56777777664 54 366654222233333443322 1122222221 123456778888889999998
Q ss_pred ccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCC
Q 013638 318 LTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (439)
Q Consensus 318 l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~ 396 (439)
++. ++++++|.+ ..|.-+|.+|..... ..| ..+..++++
T Consensus 155 l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~----------------------------- 194 (286)
T PRK14184 155 PAG---KKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR----------------------------- 194 (286)
T ss_pred CCC---CEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC-----------------------------
Confidence 877 999999985 578888887754110 012 245666542
Q ss_pred CCCHHHHhccCCCcEEEeccCCCCCCCHHHHH
Q 013638 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVKT 428 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~ 428 (439)
..+|.+.++. +|++|+..+.|+.|++++|+
T Consensus 195 t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1348899998 99999999999999999995
No 76
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.00 E-value=0.32 Score=44.15 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=53.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc----CCC---CCChhhhccccccCCcCCCCCC
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK----ERK---NLDPAAAPFAKDPGDFMGLREG 397 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~----~r~---~L~~~k~~fA~~~~~~~~~~~~ 397 (439)
||.|+|||+.|.++|..+... | .++.|.+++.-..+ .+. .++..+ +... ..-.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~--l~~~------i~~t 60 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIEEINETRQNPKYLPGIK--LPEN------IKAT 60 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHHHHHHHTSETTTSTTSB--EETT------EEEE
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHHHHHHhCCCCCCCCCcc--cCcc------cccc
Confidence 789999999999999888764 3 36777777642111 111 111111 1000 0123
Q ss_pred CCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccC
Q 013638 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFI 434 (439)
Q Consensus 398 ~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~ 434 (439)
.+|++++++ +|++| ++ +|--+-+++++.++++.
T Consensus 61 ~dl~~a~~~--ad~Ii-ia-vPs~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 61 TDLEEALED--ADIII-IA-VPSQAHREVLEQLAPYL 93 (157)
T ss_dssp SSHHHHHTT---SEEE-E--S-GGGHHHHHHHHTTTS
T ss_pred cCHHHHhCc--ccEEE-ec-ccHHHHHHHHHHHhhcc
Confidence 579999998 88887 44 36667799999999865
No 77
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.98 E-value=0.51 Score=47.76 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 306 gll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
|+..+++-.+.+. +.+++++|++|||-|+.+|+-.+.++ |. ++|+++++
T Consensus 110 G~~~~L~~~~~~~-~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPV-DVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCc-ccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 4777787755331 22338999999999999998777664 44 58999988
No 78
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.88 E-value=0.94 Score=45.97 Aligned_cols=131 Identities=15% Similarity=0.220 Sum_probs=86.0
Q ss_pred HHHHHHHHHhC--Cce---EEEEe---cCCCchHHHHHHHHhhc--c------cccccCcchhHHHHHHHHHHHHHHhCC
Q 013638 253 DEFMEAVHARW--PKA---IVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (439)
Q Consensus 253 defv~av~~~~--P~~---~IqfE---Df~~~naf~iL~ryr~~--~------~~FNDDiQGTaaV~LAgll~A~r~~g~ 316 (439)
+||++.+.+.- |++ ++|+= .+.....++.+.-.+|- + ..|.++..+=.-+|-+|++.=++..+.
T Consensus 74 ~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 74 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777763 643 66653 44333333333222221 1 223232234456678888888888898
Q ss_pred CccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCC
Q 013638 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (439)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~ 395 (439)
+++. ++++++|.+ ..|.-+|.+|.. .|. .+.+|+|+
T Consensus 154 ~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~---------------------------- 190 (282)
T PRK14166 154 DLEG---KDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK---------------------------- 190 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 8887 999999975 578888888754 232 45555542
Q ss_pred CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 396 ~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
.++|.+.++. +|++|-..+.|+.|++++|+.
T Consensus 191 -T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 221 (282)
T PRK14166 191 -TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVKE 221 (282)
T ss_pred -CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1348888888 999999999999999999874
No 79
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.80 E-value=0.98 Score=46.11 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-.|++.=++..+.+++. ++++++|.+ ..|.-+|.+|.. .| ..+.+|+|+
T Consensus 140 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~----------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSG---SDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA----------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC-----------
Confidence 456778888889999998888 999999985 578888888754 23 246666652
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.++++||+.
T Consensus 194 ------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 194 ------------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347888888 999999999999999999874
No 80
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.31 E-value=0.33 Score=46.37 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=30.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
+.||+|+|+|..|.+||..++.+ |+ +++.++|.+=+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE
Confidence 39999999999999999999765 54 58999998733
No 81
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.29 E-value=0.84 Score=46.53 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeC-chhHHHHHHHHHHHH
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVG-AGSAGLGVLKMAVQA 345 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~G-AGsAgiGiA~li~~~ 345 (439)
.-+|-.|++.=++..+.+++. ++|+|+| .|..|..+|.+|...
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~G---k~V~viGrs~~mG~PmA~~L~~~ 181 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSG---LNAVVIGRSNLVGKPMAQLLLAA 181 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEEcCCcchHHHHHHHHHhC
Confidence 456677888888888888777 9999999 999999999999753
No 82
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=89.11 E-value=1.1 Score=45.79 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=85.2
Q ss_pred HHHHHHHHHhC--Cc---eEEEEecCCCchHHHHHHHHhh--cc---------cccccC-cchhHHHHHHHHHHHHHHhC
Q 013638 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RF---------CMFNDD-IQGTAGVALAGLLGTVRAQG 315 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~---------~~FNDD-iQGTaaV~LAgll~A~r~~g 315 (439)
+|+++.+.+.- |+ .++|+==.+.-+..++++...- .+ ..|.++ ..+=.-+|-+|++.=++-.|
T Consensus 83 ~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~ 162 (299)
T PLN02516 83 AELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSG 162 (299)
T ss_pred HHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhC
Confidence 56777777764 64 3666542222333334333221 11 122221 12334567778888888889
Q ss_pred CCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCC
Q 013638 316 LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~ 394 (439)
.+++. ++++|+|-+ ..|.-+|.||.. .| ..+++|+|+
T Consensus 163 i~l~G---k~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~--------------------------- 200 (299)
T PLN02516 163 IPIKG---KKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR--------------------------- 200 (299)
T ss_pred CCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC---------------------------
Confidence 88877 999999985 578888887754 23 257777552
Q ss_pred CCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 395 ~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
.++|.+.++. +|++|-..+.|+.|+.|||+.
T Consensus 201 --T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk~ 231 (299)
T PLN02516 201 --TPDPESIVRE--ADIVIAAAGQAMMIKGDWIKP 231 (299)
T ss_pred --CCCHHHHHhh--CCEEEEcCCCcCccCHHHcCC
Confidence 1348888888 999999999999999999874
No 83
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.94 E-value=0.28 Score=50.32 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=25.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.||.|+|||..|.|||..++.+ |. ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5799999999999999988765 43 5777776
No 84
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.79 E-value=1.2 Score=45.32 Aligned_cols=131 Identities=13% Similarity=0.142 Sum_probs=85.4
Q ss_pred HHHHHHHHHhC--Cc---eEEEEecCCCchHHHHHHHHhh--cc---------cccccCcchhHHHHHHHHHHHHHHhCC
Q 013638 253 DEFMEAVHARW--PK---AIVQFEDFQMKWAFETLERYRK--RF---------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfEDf~~~naf~iL~ryr~--~~---------~~FNDDiQGTaaV~LAgll~A~r~~g~ 316 (439)
+|+++.+.+.- |+ .++|+==.+.-+..++++.-.- .+ ..|..+-.+=.-+|-+|++.=++..+.
T Consensus 76 ~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 76 NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777764 54 3666532222233333333221 12 122222233456778888888899999
Q ss_pred CccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCC
Q 013638 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (439)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~ 395 (439)
+++. .+++++|.+ ..|..+|.++.. .|. .+.+|+|+
T Consensus 156 ~l~G---K~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~---------------------------- 192 (288)
T PRK14171 156 NLTG---KNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK---------------------------- 192 (288)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 8877 999999975 678888888754 232 45666542
Q ss_pred CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 396 ~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.+++++|+.
T Consensus 193 -T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 193 -THNLSSITSK--ADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred -CCCHHHHHhh--CCEEEEccCCCCccCHHHcCC
Confidence 1348888888 999999999999999999874
No 85
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.72 E-value=1.1 Score=41.60 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
+|.+++|.|+|.|..|..+|+++....+ +++.+|+..-
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~------------~V~~~d~~~~ 70 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM------------RVIGYDRSPK 70 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSCH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc------------eeEEecccCC
Confidence 3444999999999999999999986543 7999998643
No 86
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.67 E-value=2.1 Score=45.13 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
..|=-+++.+++..|..|..|.+ .++.|+|.|..|-.+|+.+... |+ ++..+|.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~g---ktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHD---RTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 45555788888888877877777 9999999999999999998765 43 6888885
No 87
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.63 E-value=1.3 Score=44.97 Aligned_cols=85 Identities=13% Similarity=0.254 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCC
Q 013638 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (439)
Q Consensus 299 TaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L 377 (439)
=.-+|-.|++.=++..+.+++. ++++++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~---------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAG---KRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK---------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC----------
Confidence 3466778888888888998888 999999975 678888888754 232 35555332
Q ss_pred ChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 378 ~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.|+.|+|+.
T Consensus 190 -------------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk~ 220 (282)
T PRK14169 190 -------------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVKP 220 (282)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 2358888888 999999999999999999874
No 88
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.61 E-value=1.2 Score=45.16 Aligned_cols=86 Identities=15% Similarity=0.285 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-.|++.-++..|.+++. ++++++|.+ ..|.-+|.+|..-. .+. .+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~~~---~~a-------tVtvchs~----------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAG---AHVVVIGRGVTVGRPIGLLLTRRS---ENA-------TVTLCHTG----------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHhhcc---CCC-------EEEEeCCC-----------
Confidence 456778888888999998877 999999985 67888888875410 122 35555542
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-+.+.|+.+++|+|+.
T Consensus 194 ------------------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik~ 224 (284)
T PRK14193 194 ------------------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVKP 224 (284)
T ss_pred ------------------CCCHHHHHHh--CCEEEEecCCcCccCHHHcCC
Confidence 1358888988 999999999999999999874
No 89
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=88.60 E-value=0.42 Score=49.64 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=46.0
Q ss_pred chHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 013638 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (439)
Q Consensus 276 ~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~e 355 (439)
..||+.=+|-|.+-- =|+++|.++.+ |.+...+ +.+|.+.+++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~------I~~~~vSv~s~--av~~~~~-~~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~--- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG------APYAEVTIESV--VQQELRR-RQKSKKASLLFIGYSEINRKVAYYLQR-----QGY--- 198 (338)
T ss_pred HHHHHHHHHHhhhcC------CCCCCcCHHHH--HHHHHHH-hCCccCCEEEEEcccHHHHHHHHHHHH-----cCC---
Confidence 456666667776521 14555555544 2332222 344555999999999998777777665 354
Q ss_pred hhcCeEEEEeccc
Q 013638 356 FARNKFFLLDKDG 368 (439)
Q Consensus 356 eA~~~i~lvDs~G 368 (439)
++|+++.+.-
T Consensus 199 ---~~i~v~nRt~ 208 (338)
T PRK00676 199 ---SRITFCSRQQ 208 (338)
T ss_pred ---CEEEEEcCCc
Confidence 4799888864
No 90
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.53 E-value=1.2 Score=45.42 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC
Q 013638 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~ 376 (439)
+-.-+|-+|++.=++-.|.+++. ++++++|.+ ..|.-+|.+|.. .|+.. ...+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~~~~---~atVtv~hs~--------- 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSG---AEVVVVGRSNIVGKPIANMMTQ-----KGPGA---NATVTIVHTR--------- 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcccHHHHHHHHh-----cccCC---CCEEEEecCC---------
Confidence 34556778888888888998888 999999985 678888877754 22110 0245555442
Q ss_pred CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 377 L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
.++|.+.++. +|++|-+.+.|+.|++|||+.
T Consensus 199 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 199 --------------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 1348888888 999999999999999999974
No 91
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.20 E-value=0.82 Score=45.79 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=39.9
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.=||=|.. |++.+++..+.+. . .+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~~--------Gf~~~L~~~~~~~-~---~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDYI--------AIAKLLASYQVPP-D---LVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCC-C---CeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 445565654 4777887666542 4 589999999999988776654 454 479999874
No 92
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.96 E-value=0.46 Score=45.72 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=29.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+++|+|..|..||..|+.+ |+ .+|+++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 9999999999999999998765 55 589999987
No 93
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.86 E-value=1.6 Score=44.39 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-+|++.=++..+.+++. ++++++|-+ ..|.-+|.+|.. .| ..+.+|.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~----------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKG---KRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR----------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 456778888888888988777 999999975 578888877754 22 145555331
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.+++|+|+.
T Consensus 191 ------------------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 191 ------------------TADLAGEVGR--ADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 2348888888 999999999999999999874
No 94
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.81 E-value=1.6 Score=44.30 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=85.3
Q ss_pred HHHHHHHHHhC--Cc---eEEEEe---cCCCchHHHHHHHHhhc--cc------ccccCcchhHHHHHHHHHHHHHHhCC
Q 013638 253 DEFMEAVHARW--PK---AIVQFE---DFQMKWAFETLERYRKR--FC------MFNDDIQGTAGVALAGLLGTVRAQGL 316 (439)
Q Consensus 253 defv~av~~~~--P~---~~IqfE---Df~~~naf~iL~ryr~~--~~------~FNDDiQGTaaV~LAgll~A~r~~g~ 316 (439)
+||.+.+.+.- |+ .++|+= .+.....++.+.-.+|- ++ .|..|..+=.-+|-.|++.=++-.+.
T Consensus 75 ~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 75 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC
Confidence 56777777774 54 366653 44433333333332221 11 22222233356688888888898999
Q ss_pred CccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCC
Q 013638 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (439)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~ 395 (439)
+++. .+++++|.+ ..|..+|.+|.. .|. .+.+|+|+
T Consensus 155 ~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~---------------------------- 191 (282)
T PRK14180 155 KTEG---AYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF---------------------------- 191 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC----------------------------
Confidence 8888 999999985 578888888754 232 45555542
Q ss_pred CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 396 ~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
.++|.+.++. +|++|-..+.|+.|++++|+.
T Consensus 192 -T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 192 -TTDLKSHTTK--ADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred -CCCHHHHhhh--cCEEEEccCCcCcCCHHHcCC
Confidence 1347777777 999999999999999999873
No 95
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.81 E-value=1.5 Score=44.59 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-.|++.=++..+.+++. .+++++|.+ ..|.-+|.+|.. .|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~----------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAG---KEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK----------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 456778888888888988877 999999975 678888888754 232 45555431
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.+++ +|++|-+.+.|+.+++++|+.
T Consensus 189 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 219 (287)
T PRK14173 189 ------------------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVRP 219 (287)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcCC
Confidence 2358888888 999999999999999999874
No 96
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.71 E-value=0.49 Score=44.94 Aligned_cols=105 Identities=13% Similarity=0.226 Sum_probs=61.8
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhccc---
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFA--- 385 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA--- 385 (439)
+|.+ .||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+=..+ |. ++-..|..-+
T Consensus 18 kl~~---~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~ 83 (202)
T TIGR02356 18 RLLN---SHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQR 83 (202)
T ss_pred HhcC---CCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHH
Confidence 4555 9999999999999999988765 44 689999987331111 10 1111121111
Q ss_pred -cccCC---cCCCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 386 -KDPGD---FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 386 -~~~~~---~~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+..++ +.... ...++.+.++. .|++|.+.. ..=++.++..++....+|.|
T Consensus 84 l~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d--~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 84 LRELNSDIQVTALKERVTAENLELLINN--VDLVLDCTD--NFATRYLINDACVALGTPLI 140 (202)
T ss_pred HHHhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEE
Confidence 11111 00000 11235666776 899998764 34456677788887777754
No 97
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.71 E-value=1.6 Score=44.50 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC
Q 013638 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~ 376 (439)
+=.-+|-.|++.=++-.|.+++. ++++++|.+ ..|.-+|.||... |... . ..+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~~-~--AtVtvchs~--------- 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHG---RHVAIVGRSNIVGKPLAALLMQK-----HPDT-N--ATVTLLHSQ--------- 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHhC-----cCCC-C--CEEEEeCCC---------
Confidence 33566778888888999998887 999999975 5788888887542 2110 0 134444331
Q ss_pred CChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 377 L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.+++|||+.
T Consensus 191 --------------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 191 --------------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 2458888888 999999999999999999874
No 98
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=87.65 E-value=0.56 Score=46.30 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=76.2
Q ss_pred CcchhHHHHHHHHHHHHHHhCCC-ccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC
Q 013638 295 DIQGTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (439)
Q Consensus 295 DiQGTaaV~LAgll~A~r~~g~~-l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~ 373 (439)
--+-||-=+..++-.+++..+.. ++. .|++|-|.|..|...|+.+.+. |. +=+-+.|++|.|.+.
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g---~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~ 71 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEG---KRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDP 71 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTT---CEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEET
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcC
Confidence 34567777788888889886665 666 9999999999999999998775 32 345667888888864
Q ss_pred CC----CCChhhhccccccCCcCC-CC-CCCCHHH--HhccCCCcEEEeccCCCCCCCHHHHH-HHh
Q 013638 374 RK----NLDPAAAPFAKDPGDFMG-LR-EGASLLE--VVRKVKPHVLLGLSGVGGVFNEEVKT-YFL 431 (439)
Q Consensus 374 r~----~L~~~k~~fA~~~~~~~~-~~-~~~sL~e--aV~~vkPtvLIG~S~~~G~FteevV~-~Ma 431 (439)
.. .|..++...--+-..... .+ ...-+.+ .+-.++.||||=+ +.++.+|++.+. .+.
T Consensus 72 ~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~ 137 (244)
T PF00208_consen 72 DGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK 137 (244)
T ss_dssp TEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH
T ss_pred CCchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh
Confidence 31 122221111000000000 00 0000111 4555789999988 458999999887 553
No 99
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.41 E-value=0.51 Score=45.45 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=61.7
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc--
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK-- 386 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~-- 386 (439)
+|.+ .||+|+|+|+.|.-+|+.|+.+ |+ ++|.++|.+=+=..+ |. ++-..|..-+.
T Consensus 18 ~L~~---~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~ 83 (228)
T cd00757 18 KLKN---ARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAER 83 (228)
T ss_pred HHhC---CcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHH
Confidence 4455 9999999999999999999776 44 689999987432221 21 12222211111
Q ss_pred --ccCC---cCCCCC---CCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 --DPGD---FMGLRE---GASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 --~~~~---~~~~~~---~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
..++ +..... ..++.+.++. +|++|.+..- .-++.++..++....+|+|
T Consensus 84 l~~~np~~~i~~~~~~i~~~~~~~~~~~--~DvVi~~~d~--~~~r~~l~~~~~~~~ip~i 140 (228)
T cd00757 84 LRAINPDVEIEAYNERLDAENAEELIAG--YDLVLDCTDN--FATRYLINDACVKLGKPLV 140 (228)
T ss_pred HHHhCCCCEEEEecceeCHHHHHHHHhC--CCEEEEcCCC--HHHHHHHHHHHHHcCCCEE
Confidence 1111 000011 1234556666 8999987642 2355667777777777764
No 100
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=87.33 E-value=3.4 Score=43.67 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=96.0
Q ss_pred ccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccchhhhHH-----HhhcCCCCCc-eecEEeeccCC
Q 013638 153 SAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQR-ILPVMLDVGTN 225 (439)
Q Consensus 153 s~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~LY-----~a~aGI~P~~-~LPV~LDvGTn 225 (439)
+..|-..+..+|... ++++. +++| +.+.-+--.+.+-.-+..+....| ..+ |+.+-. .+|+-++
T Consensus 176 ~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~L~~~-GiP~~~~~~P~G~~---- 246 (427)
T PRK02842 176 ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARALRER-GAKVLTAPFPLGPE---- 246 (427)
T ss_pred CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHHHHHc-CCccccCCCCcChH----
Confidence 345555677888754 46664 7787 555555444433222222222111 444 665422 2443222
Q ss_pred chhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHH
Q 013638 226 NQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALA 305 (439)
Q Consensus 226 n~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LA 305 (439)
-.++|++++.+.+-. ..+.+-+.+++.|.+
T Consensus 247 -------------------------~T~~~L~~la~~~g~--------~~~~~~~~~~~er~~----------------- 276 (427)
T PRK02842 247 -------------------------GTRAWLEAAAAAFGI--------DPDGLEEREAPAWER----------------- 276 (427)
T ss_pred -------------------------HHHHHHHHHHHHhCc--------CHhHHHHHHHHHHHH-----------------
Confidence 268888888887631 112122334444422
Q ss_pred HHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccc
Q 013638 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (439)
Q Consensus 306 gll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA 385 (439)
+..++....+.++. .|++|+|-+.-.+++|+.+... .|+. +..+-+. ...++.+...-+.+.
T Consensus 277 -~~~~l~~~~~~l~G---krvai~g~~~~~~~la~~L~ee----lGm~-------~v~v~t~---~~~~~~~~~~~~~l~ 338 (427)
T PRK02842 277 -ARKALEPYRELLRG---KRVFFLPDSQLEIPLARFLSRE----CGME-------LVEVGTP---YLNRRFLAAELALLP 338 (427)
T ss_pred -HHHHHHHhhhhcCC---cEEEEECCchhHHHHHHHHHHh----CCCE-------EEEeCCC---CCCHHHHHHHHHhcc
Confidence 44555555666666 8999999988899999998762 3553 2212110 011111111111121
Q ss_pred cccCCcCCCCCCCCHHHHhccCCCcEEEeccC
Q 013638 386 KDPGDFMGLREGASLLEVVRKVKPHVLLGLSG 417 (439)
Q Consensus 386 ~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~ 417 (439)
....-.. ..+...+++.++..+||.+||-|.
T Consensus 339 ~~~~v~~-~~D~~~l~~~i~~~~pDllig~~~ 369 (427)
T PRK02842 339 DGVRIVE-GQDVERQLDRIRALRPDLVVCGLG 369 (427)
T ss_pred CCCEEEE-CCCHHHHHHHHHHcCCCEEEccCc
Confidence 1110000 012234688999999999999874
No 101
>PRK07574 formate dehydrogenase; Provisional
Probab=87.30 E-value=4.1 Score=42.97 Aligned_cols=95 Identities=19% Similarity=0.199 Sum_probs=59.7
Q ss_pred HhCCce-EEEEecCCCchHHHHHHHHhhcccccccCcc---hhHHHHHHHHHHHHHHh---------C--------CCcc
Q 013638 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G--------LSLT 319 (439)
Q Consensus 261 ~~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQ---GTaaV~LAgll~A~r~~---------g--------~~l~ 319 (439)
+..|+. .|+.-=.+..| ..+-.--+..+.+.|-.-- .+|=-+++-+|+.+|-. | ..-.
T Consensus 110 ~~~p~LK~I~~~g~G~D~-id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 188 (385)
T PRK07574 110 AKAPNLKLAITAGIGSDH-VDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSY 188 (385)
T ss_pred hhCCCCcEEEECCccccc-ccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccce
Confidence 456776 67765555544 2222222234777775332 34444788888877622 1 0123
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+..
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~ 225 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHR 225 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC
Confidence 46669999999999999999998764 33 688888754
No 102
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.25 E-value=0.53 Score=46.14 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=61.2
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhccc---
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFA--- 385 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA--- 385 (439)
+|++ .||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+=..+ |. ++-..|..-+
T Consensus 21 ~L~~---~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~ 86 (240)
T TIGR02355 21 ALKA---SRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDA 86 (240)
T ss_pred HHhC---CcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHH
Confidence 4555 9999999999999999998775 54 589999987443222 11 1111111111
Q ss_pred -cccCCc---CCCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 386 -KDPGDF---MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 386 -~~~~~~---~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+.-+++ .... ...++.+.++. .|++|-++. ..-++.++-.++....+|+|
T Consensus 87 l~~inp~v~i~~~~~~i~~~~~~~~~~~--~DlVvd~~D--~~~~r~~ln~~~~~~~ip~v 143 (240)
T TIGR02355 87 LTQINPHIAINPINAKLDDAELAALIAE--HDIVVDCTD--NVEVRNQLNRQCFAAKVPLV 143 (240)
T ss_pred HHHHCCCcEEEEEeccCCHHHHHHHhhc--CCEEEEcCC--CHHHHHHHHHHHHHcCCCEE
Confidence 111110 0000 11235556666 788887764 33456667777777777754
No 103
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.17 E-value=0.53 Score=48.48 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=62.7
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CCCCCh--------hhhccc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RKNLDP--------AAAPFA 385 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~~L~~--------~k~~fA 385 (439)
++|++ .+|+|+|+|..|..+|+.|+.+.+ ++|.++|.+=+=..+ |.-|.. .|..-|
T Consensus 20 ~~L~~---~~VlIiG~GglGs~va~~La~aGv-----------g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa 85 (338)
T PRK12475 20 RKIRE---KHVLIVGAGALGAANAEALVRAGI-----------GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAA 85 (338)
T ss_pred HhhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCcccccccCccccccHHHccCCccHHHHH
Confidence 34555 999999999999999999987644 589999997531111 111100 011111
Q ss_pred ----cccCC-cC--C---CCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 386 ----KDPGD-FM--G---LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 386 ----~~~~~-~~--~---~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+.-++ .. . .-...++.+.+++ .|++|-++. ..-+..++..++....+|.|
T Consensus 86 ~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D--~~~~r~~in~~~~~~~ip~i 145 (338)
T PRK12475 86 KEHLRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATD--NFDTRLLINDLSQKYNIPWI 145 (338)
T ss_pred HHHHHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCC--CHHHHHHHHHHHHHcCCCEE
Confidence 11111 00 0 0011347777877 899998764 34455667777777777754
No 104
>PRK08605 D-lactate dehydrogenase; Validated
Probab=87.08 E-value=2.3 Score=43.53 Aligned_cols=37 Identities=30% Similarity=0.479 Sum_probs=29.1
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|.+++|.|+|+|..|..+|+.+..+ .|+ ++|.+|+.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~ 179 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPF 179 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCC
Confidence 45569999999999999999998532 243 68888864
No 105
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.05 E-value=0.28 Score=53.28 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=27.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~ 360 (439)
-+|+|+|||.||+..|++|.++.. .+..=|||.|
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 689999999999999999999755 2444556654
No 106
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=86.63 E-value=1.8 Score=45.50 Aligned_cols=84 Identities=10% Similarity=0.184 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-+|++.=++..+.+++. +++||+|-+ ..|.-+|.||... |. .+.+|.|+
T Consensus 211 ~PCTp~avielL~~y~i~l~G---K~vvVIGRS~iVGkPLa~LL~~~-----~A-------TVTicHs~----------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKG---KRAVVIGRSNIVGMPAALLLQRE-----DA-------TVSIVHSR----------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----CC-------eEEEeCCC-----------
Confidence 456677888888888988877 999999975 5788888777542 32 46665432
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
.++|.+.++. +|++|-..+.|+.++.|||+.
T Consensus 265 ------------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 265 ------------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcCC
Confidence 2358888888 999999999999999999974
No 107
>PLN00106 malate dehydrogenase
Probab=86.59 E-value=1.6 Score=44.82 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=69.9
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhh
Q 013638 305 AGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAA 382 (439)
Q Consensus 305 Agll~A~r~~g~~l~dl~~~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~ 382 (439)
|.-+.|+|..|..-. .||+|+|| |..|..+|..+.. .|+- ..+.|+|.+- ..+. -+|.+...
T Consensus 4 ~~~~~~~~~~~~~~~----~KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~el~L~Di~~--~~g~a~Dl~~~~~ 67 (323)
T PLN00106 4 ASSLRACRAKGGAPG----FKVAVLGAAGGIGQPLSLLMKM-----NPLV-----SELHLYDIAN--TPGVAADVSHINT 67 (323)
T ss_pred hhhhhccccccCCCC----CEEEEECCCCHHHHHHHHHHHh-----CCCC-----CEEEEEecCC--CCeeEchhhhCCc
Confidence 456778888887655 59999999 9999999987754 2442 4799999865 1111 13332221
Q ss_pred ccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCC--------------CCHHHHHHHhccCCCCC
Q 013638 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--------------FNEEVKTYFLCFIPCFI 438 (439)
Q Consensus 383 ~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~--------------FteevV~~Ma~~~~~pi 438 (439)
+ .+-. .. ....++.+++++ .|++|=+.+.+.. ..+++++.+.++++..|
T Consensus 68 ~-~~i~-~~---~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~ai 130 (323)
T PLN00106 68 P-AQVR-GF---LGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNAL 130 (323)
T ss_pred C-ceEE-EE---eCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 1 1100 00 023468899999 9998866665421 34567777777776654
No 108
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.54 E-value=1.9 Score=44.16 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-.|++.=++..+.+++. ++++++|.+ .-|..+|.||..... ..+ ..+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~~~-~~~-------aTVtvchs~----------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEG---ADVVVVGRSDIVGKPMANLLIQKAD-GGN-------ATVTVCHSR----------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCcccHHHHHHHHhcCcc-CCC-------CEEEEeCCC-----------
Confidence 346778888888888988877 999999975 578888888754210 001 134444331
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.+++ +|++|-+.+.|+.|+.+||+.
T Consensus 195 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 225 (297)
T PRK14167 195 ------------------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLSE 225 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 2358888888 999999999999999999874
No 109
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.39 E-value=0.63 Score=44.19 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=30.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=+
T Consensus 20 s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~v 54 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRLV 54 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCcC
Confidence 9999999999999999999776 44 68999998743
No 110
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.33 E-value=9 Score=38.95 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=63.0
Q ss_pred HhCCce-EEEEecCCCchHHHHHHHHhhcccccccCc---chhHHHHHHHHHHHHHHh---------C----C-------
Q 013638 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G----L------- 316 (439)
Q Consensus 261 ~~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~A~r~~---------g----~------- 316 (439)
...|+. .|+.-=.+..| ..+-.--+..+.+.|--- ..+|=-+++-+++..|-. | .
T Consensus 59 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 137 (311)
T PRK08410 59 SQLPNLKLICITATGTNN-VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHIS 137 (311)
T ss_pred hhCCCCeEEEEccccccc-ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccC
Confidence 355776 77776666555 333322234577777422 346667788888887742 1 0
Q ss_pred -CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 317 -~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
+..+|.++++.|+|-|..|-.+|+++... |+ +|+.+|+.+
T Consensus 138 ~~~~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm-------~V~~~d~~~ 178 (311)
T PRK08410 138 RPLGEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA-------KVVYYSTSG 178 (311)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHhhc-----CC-------EEEEECCCc
Confidence 12356779999999999999999988654 33 688888853
No 111
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=86.11 E-value=0.73 Score=41.69 Aligned_cols=32 Identities=28% Similarity=0.607 Sum_probs=26.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
+|||+|+|.||+..|..+... | .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-----~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-----G-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-----C-------CeEEEEeccc
Confidence 699999999999999998832 3 3788887644
No 112
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=86.03 E-value=0.57 Score=48.91 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred HHHHhhcccc--cccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcC
Q 013638 282 LERYRKRFCM--FNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARN 359 (439)
Q Consensus 282 L~ryr~~~~~--FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~ 359 (439)
++||..++.+ |.-+- -++|.+ .||+++|+|..|..+|..|+.+ |+ +
T Consensus 19 ~~ry~Rqi~l~~~g~~~------------------q~~l~~---~~VliiG~GglG~~v~~~La~~-----Gv------g 66 (370)
T PRK05600 19 LRRTARQLALPGFGIEQ------------------QERLHN---ARVLVIGAGGLGCPAMQSLASA-----GV------G 66 (370)
T ss_pred HHHhhcccchhhhCHHH------------------HHHhcC---CcEEEECCCHHHHHHHHHHHHc-----CC------C
Confidence 5789888654 43222 245566 9999999999999999998776 44 6
Q ss_pred eEEEEecccccccC--CC------CCChhhhcccc----ccCC---cCCCC---CCCCHHHHhccCCCcEEEeccCCCCC
Q 013638 360 KFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGD---FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGV 421 (439)
Q Consensus 360 ~i~lvDs~GLl~~~--r~------~L~~~k~~fA~----~~~~---~~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~ 421 (439)
+|.++|.+=+=..+ |. ++-..|..-+. ..++ +.... ...++.+.+++ .|++|.++- ..
T Consensus 67 ~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~D--n~ 142 (370)
T PRK05600 67 TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSD--SF 142 (370)
T ss_pred EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCC--CH
Confidence 89999997442221 11 12122222211 1111 11001 11246667777 899988764 33
Q ss_pred CCHHHHHHHhccCCCCCC
Q 013638 422 FNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 422 FteevV~~Ma~~~~~pi~ 439 (439)
=++-+|..++....+|.|
T Consensus 143 ~~r~~in~~~~~~~iP~v 160 (370)
T PRK05600 143 ATKFLVADAAEITGTPLV 160 (370)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 456677777777777754
No 113
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=85.99 E-value=0.3 Score=52.79 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=19.8
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.||||+|||.||++.|.-+++
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred ceEEEECCchHHHHHHHHHHH
Confidence 799999999999999999884
No 114
>PLN03139 formate dehydrogenase; Provisional
Probab=85.90 E-value=5.3 Score=42.21 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=62.6
Q ss_pred HhCCce-EEEEecCCCchHHHHHHHHhhcccccccCcc---hhHHHHHHHHHHHHHHh---------CC--------Ccc
Q 013638 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------GL--------SLT 319 (439)
Q Consensus 261 ~~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQ---GTaaV~LAgll~A~r~~---------g~--------~l~ 319 (439)
...|+. +|+.-=.+..| ..+-.--+..|++.|---- .+|=-+++-+|+.+|-. |. .-.
T Consensus 117 ~~ap~LK~I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 117 KKAKNLELLLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred hhCCCccEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 456886 78777777665 3333333345888885332 34445688888877721 10 113
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~ 232 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLK 232 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCC
Confidence 56669999999999999999998764 33 577788754
No 115
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.85 E-value=0.18 Score=45.38 Aligned_cols=96 Identities=22% Similarity=0.359 Sum_probs=57.8
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-cccccCCCCCChhhhccccccCCcCCCCCCCCHHH
Q 013638 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (439)
Q Consensus 325 riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~e 402 (439)
||.|+|| |..|..+|-+|+.. |+- ++|.|+|.+ ......--+|.+...+.-++.. ......+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~------i~~~~~~ 65 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDKAEGEALDLSHASAPLPSPVR------ITSGDYE 65 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHHHHHHHHHHHHHHHGSTEEEE------EEESSGG
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCcccceeeehhhhhhhhhcccccc------ccccccc
Confidence 8999999 99999999888763 553 469999996 3211111233333222211110 1124677
Q ss_pred HhccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCCCCC
Q 013638 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIPCFI 438 (439)
Q Consensus 403 aV~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~~pi 438 (439)
++++ +|++|=+.+.+ |- +-+++.+.++++++..|
T Consensus 66 ~~~~--aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~ 113 (141)
T PF00056_consen 66 ALKD--ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAI 113 (141)
T ss_dssp GGTT--ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSE
T ss_pred cccc--ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccE
Confidence 7887 99999554433 32 23466677777777654
No 116
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.52 E-value=2.4 Score=43.37 Aligned_cols=88 Identities=11% Similarity=0.167 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-+|++.=++-.+.+++. ++++++|.+ ..|.-+|.||.. .|.+. . ..+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~G---K~vvViGrS~iVGkPla~lL~~-----~~~~~-~--aTVtvchs~----------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSG---KKCVVLGRSNIVGKPMAQLMMQ-----KAYPG-D--CTVTVCHSR----------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHc-----CCCCC-C--CEEEEecCC-----------
Confidence 355777888888888988877 999999985 578888877754 22110 0 124444332
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.+++|||+.
T Consensus 195 ------------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 195 ------------------SKNLKKECLE--ADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 2358888888 999999999999999999873
No 117
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.52 E-value=2.4 Score=43.34 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-.|++.=++..|.+++. ++++++|.+ ..|..+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~----------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAG---KKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR----------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 356778888888888988877 999999975 578888888754 232 35555331
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.|++++|+.
T Consensus 192 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik~ 222 (297)
T PRK14186 192 ------------------TQDLASITRE--ADILVAAAGRPNLIGAEMVKP 222 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 2358888888 999999999999999999873
No 118
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.24 E-value=0.81 Score=40.41 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=55.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc----ccCC--
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGD-- 390 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~----~~~~-- 390 (439)
||+++|+|..|..+|+.|+.+ |. ++|+++|.+-+=..+ |. ++-..|...++ ..++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v 69 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGV 69 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCc
Confidence 689999999999999998776 44 689999987433222 11 11112211111 1111
Q ss_pred -cCCCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 391 -FMGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 391 -~~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+.... ...+..+.++. +|++|.++.. .-.+..+..+++...+|.|
T Consensus 70 ~i~~~~~~~~~~~~~~~~~~--~diVi~~~d~--~~~~~~l~~~~~~~~i~~i 118 (143)
T cd01483 70 NVTAVPEGISEDNLDDFLDG--VDLVIDAIDN--IAVRRALNRACKELGIPVI 118 (143)
T ss_pred EEEEEeeecChhhHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEE
Confidence 10000 11123455655 9999987752 3334556666666666643
No 119
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.16 E-value=0.84 Score=44.80 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=61.3
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc--
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK-- 386 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~-- 386 (439)
+|++ .||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+=..+ |. ++-..|..-|.
T Consensus 29 ~L~~---~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~ 94 (245)
T PRK05690 29 KLKA---ARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAA 94 (245)
T ss_pred HhcC---CeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHH
Confidence 5566 9999999999999999998776 44 589999987332211 11 11112221111
Q ss_pred --ccCCc---CCCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 --DPGDF---MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 --~~~~~---~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
..+++ .... ....+.+.++. .|++|.++.- .-++.++...+....+|+|
T Consensus 95 l~~lnp~v~i~~~~~~i~~~~~~~~~~~--~DiVi~~~D~--~~~r~~ln~~~~~~~ip~v 151 (245)
T PRK05690 95 LARINPHIAIETINARLDDDELAALIAG--HDLVLDCTDN--VATRNQLNRACFAAKKPLV 151 (245)
T ss_pred HHHHCCCCEEEEEeccCCHHHHHHHHhc--CCEEEecCCC--HHHHHHHHHHHHHhCCEEE
Confidence 11111 0000 11234556666 8999987752 2345667777777777754
No 120
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=85.16 E-value=2.4 Score=44.29 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhCCCccCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 300 aaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG-sAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-+|-+|++.=++-.+.+++. +++||+|-+ ..|.-+|.+|... |. .+.+|.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~G---K~vvVIGRS~iVGkPla~LL~~~-----~A-------TVTicHs~----------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAG---KNAVVIGRSNIVGLPMSLLLQRH-----DA-------TVSTVHAF----------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----CC-------EEEEEcCC-----------
Confidence 456778888888888998887 999999975 5788888777542 32 35555442
Q ss_pred hhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 379 ~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
..+|.+.++. +|++|-..+.|+.|+.|||+.
T Consensus 248 ------------------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk~ 278 (345)
T PLN02897 248 ------------------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLKP 278 (345)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcCC
Confidence 1347888888 999999999999999999874
No 121
>PRK08223 hypothetical protein; Validated
Probab=85.09 E-value=0.5 Score=48.03 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=75.8
Q ss_pred HHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc
Q 013638 279 FETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (439)
Q Consensus 279 f~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~ 358 (439)
|..-++|..++..|..+-| ++|++ .||+|+|+|..|.-+|..|+.+.+
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~---s~VlIvG~GGLGs~va~~LA~aGV----------- 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRN---SRVAIAGLGGVGGIHLLTLARLGI----------- 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhc---CCEEEECCCHHHHHHHHHHHHhCC-----------
Confidence 5666777766655543322 34455 999999999999999999888754
Q ss_pred CeEEEEecccccccC--CC------CCChhhhcccc----ccCCc---CCCC---CCCCHHHHhccCCCcEEEeccCCCC
Q 013638 359 NKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGDF---MGLR---EGASLLEVVRKVKPHVLLGLSGVGG 420 (439)
Q Consensus 359 ~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~----~~~~~---~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G 420 (439)
++|.++|.+=+=..+ |. ++-..|.+-|. .-+++ ...+ ...++.+.+++ .|++|=.+--..
T Consensus 52 G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~ 129 (287)
T PRK08223 52 GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFE 129 (287)
T ss_pred CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCc
Confidence 689999987543332 21 12222322221 11211 0000 12457788877 899884332111
Q ss_pred CCCHHHHHHHhccCCCCCC
Q 013638 421 VFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 421 ~FteevV~~Ma~~~~~pi~ 439 (439)
.=+.-+|-..|....+|.|
T Consensus 130 ~~~r~~ln~~c~~~~iP~V 148 (287)
T PRK08223 130 FDARRLVFAACQQRGIPAL 148 (287)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 1256778888888888864
No 122
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.06 E-value=1.6 Score=46.88 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCceEEEEecCCCchHHHHHHHHhhc-cc--ccccCcchhHHHHHHHHHHHHHHh--------CCCccCCC
Q 013638 254 EFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQ--------GLSLTDFA 322 (439)
Q Consensus 254 efv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~-~~--~FNDDiQGTaaV~LAgll~A~r~~--------g~~l~dl~ 322 (439)
+..+-+....|+.-..+ +....-.++.++|.-. +| ++|++..+.|....+-+++.++.. ...-.+
T Consensus 137 ~~~~~~a~~~p~i~~~~--id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 212 (515)
T TIGR03140 137 QALNQMALLNPNISHTM--IDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP-- 212 (515)
T ss_pred HHHHHHHHhCCCceEEE--EEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC--
Confidence 33344555567654444 5556677788998765 44 358888888888888888777643 111234
Q ss_pred CceEEEeCchhHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~ 344 (439)
.+++|+|||+||+..|..+..
T Consensus 213 -~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 213 -YDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred -CCEEEECCCHHHHHHHHHHHH
Confidence 789999999999999887655
No 123
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.00 E-value=0.86 Score=42.40 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=56.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC-----CCChhhhcccc----ccCCc-C
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK-----NLDPAAAPFAK----DPGDF-M 392 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~-----~L~~~k~~fA~----~~~~~-~ 392 (439)
||+++|+|..|..||+.++.+ |+ ++|.++|.+=+-..+ |. ++...|..-+. ..+++ +
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~ 69 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVK 69 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCE
Confidence 689999999999999998765 54 589999987432111 11 12112211111 11111 0
Q ss_pred --C---CCCCCCHHHHhccCCCcEEEeccCCCCCCCH-HHHHHHhccCCCCCC
Q 013638 393 --G---LREGASLLEVVRKVKPHVLLGLSGVGGVFNE-EVKTYFLCFIPCFIF 439 (439)
Q Consensus 393 --~---~~~~~sL~eaV~~vkPtvLIG~S~~~G~Fte-evV~~Ma~~~~~pi~ 439 (439)
. .-...++.+.++. .|++|.++. ..-++ .+.+...++..+|+|
T Consensus 70 i~~~~~~~~~~~~~~~l~~--~DlVi~~~d--~~~~r~~i~~~~~~~~~ip~i 118 (174)
T cd01487 70 IEAINIKIDENNLEGLFGD--CDIVVEAFD--NAETKAMLAESLLGNKNKPVV 118 (174)
T ss_pred EEEEEeecChhhHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHHCCCCEE
Confidence 0 0012346677777 899998743 33333 355666666567754
No 124
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.75 E-value=3.7 Score=42.12 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 013638 298 GTAGVALAGLLGTVRAQ---------G-----L--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~---------g-----~--~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i 361 (439)
.+|=-+++-+|+.+|-. | . .-.+|.+.+|.|+|.|..|..+|+.+... |. ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 45555677777777632 1 1 01246669999999999999999988653 43 68
Q ss_pred EEEecc
Q 013638 362 FLLDKD 367 (439)
Q Consensus 362 ~lvDs~ 367 (439)
+.+|+.
T Consensus 173 ~~~d~~ 178 (330)
T PRK12480 173 TAYDAY 178 (330)
T ss_pred EEEeCC
Confidence 888864
No 125
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=84.67 E-value=3.7 Score=41.80 Aligned_cols=86 Identities=9% Similarity=0.092 Sum_probs=52.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.+++|+|+|..|..++..+... .++ ++++++++. .++ ...+...+.+... .. .....+++++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~--a~~~a~~~~~~~g-~~-v~~~~~~~~a 191 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK--AEALALQLSSLLG-ID-VTAATDPRAA 191 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH--HHHHHHHHHhhcC-ce-EEEeCCHHHH
Confidence 6899999999999888877543 244 478888772 111 1111111211100 00 0113579999
Q ss_pred hccCCCcEEEeccCC-CCCCCHHHHHH
Q 013638 404 VRKVKPHVLLGLSGV-GGVFNEEVKTY 429 (439)
Q Consensus 404 V~~vkPtvLIG~S~~-~G~FteevV~~ 429 (439)
++. .|++|-+++. .-+|+.++++.
T Consensus 192 v~~--aDiVvtaT~s~~p~i~~~~l~~ 216 (326)
T TIGR02992 192 MSG--ADIIVTTTPSETPILHAEWLEP 216 (326)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcCC
Confidence 987 9999987653 35788888764
No 126
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=84.39 E-value=0.81 Score=48.71 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=42.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCC-CChhhhcccccc-CCcCCCCCCCCHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDP-GDFMGLREGASLL 401 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~-L~~~k~~fA~~~-~~~~~~~~~~sL~ 401 (439)
.||+|+||||+ =.-+++-+.+.+.+.++ -..|||+|-+ .+|-. +...-+.+++.. .++.- ....++.
T Consensus 1 ~KI~iIGgGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v-~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS--FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKF-EKTMDLE 69 (425)
T ss_pred CEEEEECCchH--hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEE-EEeCCHH
Confidence 38999999996 34444444433222454 3789999964 33311 111112222221 11110 1346799
Q ss_pred HHhccCCCcEEE
Q 013638 402 EVVRKVKPHVLL 413 (439)
Q Consensus 402 eaV~~vkPtvLI 413 (439)
||+++ +|-+|
T Consensus 70 ~Al~g--ADfVi 79 (425)
T cd05197 70 DAIID--ADFVI 79 (425)
T ss_pred HHhCC--CCEEE
Confidence 99999 88888
No 127
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=84.36 E-value=0.79 Score=51.42 Aligned_cols=39 Identities=18% Similarity=0.416 Sum_probs=33.0
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
|++.||+++|||.-|.-+|+.|+.+++ ++|.++|.+-+=
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GV-----------g~ItlVD~D~Ve 374 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGV-----------RHITFVDNGKVS 374 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEEC
Confidence 445999999999999999999988755 699999987553
No 128
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.20 E-value=0.91 Score=44.52 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=30.9
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+=+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~V 46 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDVV 46 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCEE
Confidence 349999999999999999998765 54 69999998743
No 129
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.03 E-value=0.85 Score=43.32 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
++|++ .||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 17 ~~L~~---s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~ 55 (197)
T cd01492 17 KRLRS---ARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT 55 (197)
T ss_pred HHHHh---CcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 34555 9999999999999999998776 44 6899999874
No 130
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.88 E-value=1.9 Score=42.54 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=35.7
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 289 ~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
+.-||=|-. |++.+++..+...+. .+++|+|+|.+|.++|..+.+ .| .+++++|+
T Consensus 94 l~g~NTD~~--------G~~~~l~~~~~~~~~---k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R 148 (270)
T TIGR00507 94 LVGYNTDGI--------GLVSDLERLIPLRPN---QRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANR 148 (270)
T ss_pred EEEEcCCHH--------HHHHHHHhcCCCccC---CEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeC
Confidence 445555544 466666544444445 799999999887777766654 23 26888876
No 131
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=83.55 E-value=0.66 Score=48.55 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc-
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~- 386 (439)
++|.+ .||+++|+|..|.-+|..|+.+. + ++|.++|.+=+=..+ |. ++-..|..-|+
T Consensus 38 ~~L~~---~~VlviG~GGlGs~va~~La~~G-----v------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~ 103 (392)
T PRK07878 38 KRLKN---ARVLVIGAGGLGSPTLLYLAAAG-----V------GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARD 103 (392)
T ss_pred HHHhc---CCEEEECCCHHHHHHHHHHHHcC-----C------CeEEEECCCEecCcccccccccChhcCCChHHHHHHH
Confidence 44556 99999999999999999988764 4 689999986332221 11 12112222221
Q ss_pred ---ccCCc-CC--CC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 ---DPGDF-MG--LR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 ---~~~~~-~~--~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
..+++ .. .. ...++.+.++. .|++|-++. ..=++-++-.++....+|.|
T Consensus 104 ~l~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d--~~~~r~~ln~~~~~~~~p~v 161 (392)
T PRK07878 104 SIVEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTD--NFATRYLVNDAAVLAGKPYV 161 (392)
T ss_pred HHHHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCC--CHHHHHHHHHHHHHcCCCEE
Confidence 11111 00 00 11235566776 899987654 22345567777777777754
No 132
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=83.44 E-value=4.9 Score=40.96 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=28.5
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
+|.++++.|+|.|..|..+|+.+..+ |+ +++.+|+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeC
Confidence 45559999999999999999998865 43 5777776
No 133
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.33 E-value=0.97 Score=46.87 Aligned_cols=105 Identities=11% Similarity=0.108 Sum_probs=61.9
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc--
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK-- 386 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~-- 386 (439)
+|++ .||+++|+|..|..+|..|+.+ |+ ++|.++|.+=+=..+ |. ++-..|..-+.
T Consensus 132 ~l~~---~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~ 197 (376)
T PRK08762 132 RLLE---ARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQR 197 (376)
T ss_pred HHhc---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHH
Confidence 4556 8999999999999999998775 44 689999986321111 11 11112211111
Q ss_pred --ccCC-c--CCCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 --DPGD-F--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 --~~~~-~--~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
..++ . .... ...++.+.++. .|++|-++.-. =+..++..++....+|.|
T Consensus 198 l~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i 254 (376)
T PRK08762 198 LAALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLV 254 (376)
T ss_pred HHHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEE
Confidence 1111 0 0000 11235666776 89999876522 256678888888888864
No 134
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.11 E-value=2.5 Score=42.98 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=57.0
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~ 401 (439)
..||.|+|||+.|.++|.+++. .|+. .+.|+|.+-=...+. -++.+.. .+....... ....+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~------~l~L~Di~~~~~~g~~lDl~~~~-~~~~~~~~i---~~~~d~~ 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-----KNLG------DVVLYDVIKGVPQGKALDLKHFS-TLVGSNINI---LGTNNYE 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCC------eEEEEECCCccchhHHHHHhhhc-cccCCCeEE---EeCCCHH
Confidence 4799999999999999887654 3542 599999742111111 1222221 111100000 1124566
Q ss_pred HHhccCCCcEEEeccCCCC--------------CCCHHHHHHHhccCCCC
Q 013638 402 EVVRKVKPHVLLGLSGVGG--------------VFNEEVKTYFLCFIPCF 437 (439)
Q Consensus 402 eaV~~vkPtvLIG~S~~~G--------------~FteevV~~Ma~~~~~p 437 (439)
++++ +|++|=+.+.+. -+-+++.+.|.++||.-
T Consensus 70 -~l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a 116 (319)
T PTZ00117 70 -DIKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNA 116 (319)
T ss_pred -HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 7788 899886554432 23458889999998764
No 135
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=82.91 E-value=1.2 Score=43.69 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=59.2
Q ss_pred EEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC-CCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 326 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 326 iv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~-r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+. ..+|.+...++ ... .. ....++.|+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~-~i---~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADI-KV---SITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCc-EE---EECCchHHH
Confidence 579999 98899998877653 31 112589999986411111 11233333222 111 10 124568999
Q ss_pred hccCCCcEEEeccCCCCC--------------CCHHHHHHHhccCCCCC
Q 013638 404 VRKVKPHVLLGLSGVGGV--------------FNEEVKTYFLCFIPCFI 438 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~G~--------------FteevV~~Ma~~~~~pi 438 (439)
+++ +|++|=+.+.++. +-+++++.|.++|+.-+
T Consensus 68 ~~~--aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~ 114 (263)
T cd00650 68 FKD--ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAW 114 (263)
T ss_pred hCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 998 9999865544322 45788888888887654
No 136
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.88 E-value=1.9 Score=46.48 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 305 Agll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.|++.+++..+..++. .+++|+|+|.+|.++|..+.+ .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~---k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNN---QHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 3588888877777777 999999999777777666654 343 5777775
No 137
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=82.83 E-value=0.97 Score=49.56 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=33.2
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
+++-|.+++|||+-|++||+-++..++ ++|.+||.--+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGv-----------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhcc-----------ceEEEEecCee
Confidence 446899999999999999999999977 69999997543
No 138
>PRK13243 glyoxylate reductase; Reviewed
Probab=82.74 E-value=15 Score=37.71 Aligned_cols=93 Identities=25% Similarity=0.235 Sum_probs=60.6
Q ss_pred hCCce-EEEEecCCCchHHHHHHHHhhcccccccCc---chhHHHHHHHHHHHHHHh---------CC------------
Q 013638 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL------------ 316 (439)
Q Consensus 262 ~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~A~r~~---------g~------------ 316 (439)
..|+. .|+.-=.+..| ..+-.--+..+++.|--- +..|=-+++.+|+..|-. |.
T Consensus 64 ~~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~ 142 (333)
T PRK13243 64 AAPRLRIVANYAVGYDN-IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM 142 (333)
T ss_pred hCCCCeEEEecCccccc-cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc
Confidence 45776 77776666665 222222234577777432 234556688888887742 11
Q ss_pred -CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 317 -~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.-.+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 143 ~~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~ 182 (333)
T PRK13243 143 FLGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRT 182 (333)
T ss_pred ccccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 01356679999999999999999988654 43 57888874
No 139
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.62 E-value=1.2 Score=45.98 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=60.3
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CCCCCh--------hhhccc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RKNLDP--------AAAPFA 385 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~~L~~--------~k~~fA 385 (439)
.+|++ .||+|+|||.-|.-+|..|+.+ |+ .+|.++|.+-+=..+ |.-+.. .|..-|
T Consensus 20 ~~L~~---~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa 85 (339)
T PRK07688 20 QKLRE---KHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAA 85 (339)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHH
Confidence 34555 9999999999999999988765 54 589999996432211 111100 111111
Q ss_pred ----cccCC-cC--C---CCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 386 ----KDPGD-FM--G---LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 386 ----~~~~~-~~--~---~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+..++ .. . .-...++.+.++. .|++|-++. ..=+..++-..+....+|.|
T Consensus 86 ~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~--~DlVid~~D--n~~~r~~ln~~~~~~~iP~i 145 (339)
T PRK07688 86 KKRLEEINSDVRVEAIVQDVTAEELEELVTG--VDLIIDATD--NFETRFIVNDAAQKYGIPWI 145 (339)
T ss_pred HHHHHHHCCCcEEEEEeccCCHHHHHHHHcC--CCEEEEcCC--CHHHHHHHHHHHHHhCCCEE
Confidence 11111 00 0 0011245666766 788887764 33355667777766677754
No 140
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=82.38 E-value=2.7 Score=42.81 Aligned_cols=132 Identities=14% Similarity=0.202 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhC--Cce---EEEEecCCCchHHHHHHHHhhc--cccccc--------CcchhHHHHHHHHHHHHHHhCC
Q 013638 252 VDEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRKR--FCMFND--------DIQGTAGVALAGLLGTVRAQGL 316 (439)
Q Consensus 252 vdefv~av~~~~--P~~---~IqfEDf~~~naf~iL~ryr~~--~~~FND--------DiQGTaaV~LAgll~A~r~~g~ 316 (439)
-+|+.+.+.+.- |++ ++||==...-++-++|+.---. +==||- ...+--.+|-+|++--++-.+.
T Consensus 73 ~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 73 EEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCC
Confidence 356666666664 543 6666544444555555543211 100111 1333446788999999999999
Q ss_pred CccCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCC
Q 013638 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGs-AgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~ 395 (439)
+|.. .++|++|.+. -|--+|.+|..+ + ..+.+|.|+
T Consensus 153 ~l~G---k~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~---------------------------- 189 (283)
T COG0190 153 DLRG---KNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR---------------------------- 189 (283)
T ss_pred CCCC---CEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC----------------------------
Confidence 8888 9999999974 677788777663 2 235555542
Q ss_pred CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHH
Q 013638 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTY 429 (439)
Q Consensus 396 ~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~ 429 (439)
+++|.+.++. +|++|-+-+.|+.|+.+||+.
T Consensus 190 -T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 190 -TKDLASITKN--ADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred -CCCHHHHhhh--CCEEEEecCCccccccccccC
Confidence 2457788888 999998888899999888874
No 141
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=82.15 E-value=9.4 Score=40.42 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=61.2
Q ss_pred HhCCce-EEEEecCCCchHHHHHHHHhhcccccccCc---chhHHHHHHHHHHHHHHh---------C---C---CccCC
Q 013638 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDF 321 (439)
Q Consensus 261 ~~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~A~r~~---------g---~---~l~dl 321 (439)
...|+. .|+.==.+..| ..+-.--+..++|+|--- ..+|=-+++.+++..|-. | + .-.+|
T Consensus 71 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L 149 (409)
T PRK11790 71 AAAEKLVAIGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEV 149 (409)
T ss_pred hhCCCCeEEEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccC
Confidence 445775 66665555554 333333334589998532 235556788888887631 1 0 11346
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+.++.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-----Gm-------~V~~~d~~ 183 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-----GM-------RVYFYDIE 183 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 669999999999999999988654 43 68888864
No 142
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.06 E-value=1.3 Score=45.89 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=62.0
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc-
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~- 386 (439)
++|++ .||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+=+=..+ |. ++-..|.+-|.
T Consensus 24 ~~L~~---~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~ 89 (355)
T PRK05597 24 QSLFD---AKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESARE 89 (355)
T ss_pred HHHhC---CeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHH
Confidence 34555 9999999999999999988765 54 689999997432221 11 11112222111
Q ss_pred ---ccCCc---CCCCC---CCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 ---DPGDF---MGLRE---GASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 ---~~~~~---~~~~~---~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
..+++ ..... ..+..+.++. .|++|-++. ..=++.++..++....+|.|
T Consensus 90 ~l~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d--~~~~r~~~n~~c~~~~ip~v 147 (355)
T PRK05597 90 AMLALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSD--NFDTRHLASWAAARLGIPHV 147 (355)
T ss_pred HHHHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEE
Confidence 11110 00001 1234566766 888887663 34455677777777777754
No 143
>PRK08374 homoserine dehydrogenase; Provisional
Probab=81.95 E-value=8.3 Score=39.72 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=54.9
Q ss_pred ceEEEeCchhHHHHHHHHHHH---HHHHHcCCChhhhcCeEEEEecccccccCCC-CCC---hhhhccccccCCcCC--C
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ---AAARMAGNNDAFARNKFFLLDKDGLITKERK-NLD---PAAAPFAKDPGDFMG--L 394 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~---~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~-~L~---~~k~~fA~~~~~~~~--~ 394 (439)
.+|.++|.|..|.+++++|.+ .+.++.|... +=+-+.|++|.+...+. ++. .+++.+.... .|.. .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~-~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS-NWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchh-hcccccc
Confidence 689999999999999999987 2332345432 22456799998876542 222 2222222110 1100 0
Q ss_pred CCCCCHHHHhccCCCcEEEeccC
Q 013638 395 REGASLLEVVRKVKPHVLLGLSG 417 (439)
Q Consensus 395 ~~~~sL~eaV~~vkPtvLIG~S~ 417 (439)
....++.|.++...+||+|-+++
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~ 100 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN 100 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC
Confidence 01237889998778999999885
No 144
>PRK06436 glycerate dehydrogenase; Provisional
Probab=81.94 E-value=5.4 Score=40.61 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|.++++.|+|-|..|..+|+++... |+ +++.+|+.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~af-----G~-------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAF-----GM-------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 45669999999999999999865433 43 68888875
No 145
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=81.63 E-value=2.8 Score=42.88 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=54.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~e 402 (439)
.||.|+|||+.|.++|..++. .|+. .+.|+|.+-=...+. -++.+.. .+....... ....++ |
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~~-~~~~~~~~I---~~~~d~-~ 70 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHSN-VIAGSNSKV---IGTNNY-E 70 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhhh-hccCCCeEE---EECCCH-H
Confidence 699999999999999887543 4652 499999743222211 1222211 111111011 112455 5
Q ss_pred HhccCCCcEEEeccCCCCC-------------------CCHHHHHHHhccCCC
Q 013638 403 VVRKVKPHVLLGLSGVGGV-------------------FNEEVKTYFLCFIPC 436 (439)
Q Consensus 403 aV~~vkPtvLIG~S~~~G~-------------------FteevV~~Ma~~~~~ 436 (439)
++++ +|++|=+.+.++- +-.++++.|.++++.
T Consensus 71 ~l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~ 121 (321)
T PTZ00082 71 DIAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPN 121 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 7787 9999965544431 134677777777765
No 146
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.48 E-value=2.3 Score=45.70 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=64.6
Q ss_pred HHHHHhCCceEEEEecCCCchHHHHHHHHhhc-cc--ccccCcchhHHHHHHHHHHHHHHhCC--------CccCCCCce
Q 013638 257 EAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQGL--------SLTDFADQK 325 (439)
Q Consensus 257 ~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~-~~--~FNDDiQGTaaV~LAgll~A~r~~g~--------~l~dl~~~r 325 (439)
+.+....|+ |.+|=+....-.++.++|.-. +| ++||+....|....+-++.+++.... ...+ -.
T Consensus 139 ~~~a~~~~~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d 213 (517)
T PRK15317 139 NLMAVLNPN--ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP---YD 213 (517)
T ss_pred HHHHHhCCC--ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC---CC
Confidence 334444575 445555556677888888765 44 35888888888888889888875321 1233 68
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++|+|||.||+..|..+.. .|+ ++.++|.+
T Consensus 214 vvIIGgGpaGl~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred EEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 9999999999999988754 464 56666654
No 147
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=81.26 E-value=1.5 Score=44.18 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~ 372 (439)
|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-..
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s 68 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT 68 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc
Confidence 3349999999999999999988776 44 68999998855443
No 148
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.26 E-value=1.6 Score=41.62 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.3
Q ss_pred CceEEEeCchhHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~ 344 (439)
..||.|+|+|..|..+|..+..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~ 25 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLK 25 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHh
Confidence 3799999999999999888765
No 149
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.08 E-value=2.2 Score=43.98 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=28.1
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++.||||+|+|.||+..|..|... |.+ .+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~~-----~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GFT-----GELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CCC-----CCEEEeCCC
Confidence 347999999999999999988763 322 368888765
No 150
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=81.08 E-value=0.89 Score=47.23 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=56.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
-+|+++|.|-+|+--|++-+ |+. .++.+.|.+ .+| |......|..+-.-.. .....++|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r--l~~ldd~f~~rv~~~~--st~~~iee~ 228 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR--LRQLDDLFGGRVHTLY--STPSNIEEA 228 (371)
T ss_pred ccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH--HhhhhHhhCceeEEEE--cCHHHHHHH
Confidence 79999999999999988643 443 367777763 222 3222223332210000 011349999
Q ss_pred hccCCCcEEEec-----cCCCCCCCHHHHHHHhc
Q 013638 404 VRKVKPHVLLGL-----SGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 404 V~~vkPtvLIG~-----S~~~G~FteevV~~Ma~ 432 (439)
+++ +|++||. +..|.+.|+|+++.|.+
T Consensus 229 v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mkp 260 (371)
T COG0686 229 VKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKP 260 (371)
T ss_pred hhh--ccEEEEEEEecCCCCceehhHHHHHhcCC
Confidence 998 9999986 33467899999999975
No 151
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.69 E-value=12 Score=40.84 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=61.3
Q ss_pred HhCCce-EEEEecCCCchHHHHHHHHhhcccccccCc---chhHHHHHHHHHHHHHHh---------CC----Cc--cCC
Q 013638 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL----SL--TDF 321 (439)
Q Consensus 261 ~~~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDDi---QGTaaV~LAgll~A~r~~---------g~----~l--~dl 321 (439)
...|+. .|+.--.+..|- .+-.--+..+++.|--- +.+|=-+++-+|+..|-. |. .. .+|
T Consensus 60 ~~~~~Lk~I~~~~~G~d~i-d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l 138 (526)
T PRK13581 60 EAAKNLKVIGRAGVGVDNV-DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVEL 138 (526)
T ss_pred hhCCCCeEEEECCcccccc-cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCcccccc
Confidence 345776 777766666552 22222234588887532 235666788888887742 10 11 245
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.++++.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~ 172 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAF-----GM-------KVIAYDPY 172 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCC
Confidence 569999999999999999998754 43 68888874
No 152
>PTZ00325 malate dehydrogenase; Provisional
Probab=80.64 E-value=6.5 Score=40.45 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=60.1
Q ss_pred CCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCH
Q 013638 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (439)
Q Consensus 322 ~~~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL 400 (439)
+-.||+|.|| |..|..+|..|+. .|+. ..+.|+|.+ .....--+|.+.... ..-. ...+..+.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-----~~~~-----~elvL~Di~-~~~g~a~Dl~~~~~~-~~v~----~~td~~~~ 70 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-----NPHV-----SELSLYDIV-GAPGVAADLSHIDTP-AKVT----GYADGELW 70 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-----CCCC-----CEEEEEecC-CCcccccchhhcCcC-ceEE----EecCCCch
Confidence 3479999999 9999999887652 2332 579999992 211111134332211 0000 00111345
Q ss_pred HHHhccCCCcEEEeccCCC---C--------C---CCHHHHHHHhccCCCCCC
Q 013638 401 LEVVRKVKPHVLLGLSGVG---G--------V---FNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 401 ~eaV~~vkPtvLIG~S~~~---G--------~---FteevV~~Ma~~~~~pi~ 439 (439)
.+++++ .|++|=+.+.+ | . ..++++++|.+++++.||
T Consensus 71 ~~~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iv 121 (321)
T PTZ00325 71 EKALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIV 121 (321)
T ss_pred HHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 889998 99888555543 3 1 556888899988877653
No 153
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=80.48 E-value=11 Score=39.44 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=71.8
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccchhhhHH-----HhhcCCCCCc-eecEEee
Q 013638 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQR-ILPVMLD 221 (439)
Q Consensus 149 Glyls~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~iGKl~LY-----~a~aGI~P~~-~LPV~LD 221 (439)
|. ++..|-..+.++|... +++++ +++|+ .+--+-..|.+.+-+..+....+ ..=-||..-. .+|+
T Consensus 162 G~-~~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~--- 233 (396)
T cd01979 162 GS-LPDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI--- 233 (396)
T ss_pred Ee-CCcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc---
Confidence 44 3455666788888764 46665 77874 45555555555444443332222 1223554322 1332
Q ss_pred ccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHHHHHHHhhcccccccCcchhHH
Q 013638 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (439)
Q Consensus 222 vGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaa 301 (439)
|- +-.++|++.+.+.+-. .-+.+++.+.+
T Consensus 234 -G~-------------------------~~t~~~l~~la~~~g~------------~~~~i~~e~~~------------- 262 (396)
T cd01979 234 -GP-------------------------DGTRAWLEAICSAFGI------------FPSVLAEREAR------------- 262 (396)
T ss_pred -Ch-------------------------HHHHHHHHHHHHHhCC------------ChhHHHHHHHH-------------
Confidence 21 1268888888877641 01123333322
Q ss_pred HHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHH
Q 013638 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 302 V~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~ 344 (439)
+..++......|.. .|++|+|-+.-..++++.+..
T Consensus 263 -----~~~~l~~~~~~l~G---krv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 263 -----AWRALEPYLDLLRG---KSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred -----HHHHHHHHHHhhcC---CEEEEECCchHHHHHHHHHHH
Confidence 33344444445555 899999998888999888876
No 154
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=79.59 E-value=1.8 Score=39.33 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=20.8
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 327 v~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|+|||.||+..|..+.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977755 465 248899987
No 155
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=79.59 E-value=4.6 Score=47.84 Aligned_cols=100 Identities=7% Similarity=0.066 Sum_probs=55.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc------------Ce---EE--EEecccccccCC-CCCChhhhcc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR------------NK---FF--LLDKDGLITKER-KNLDPAAAPF 384 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~------------~~---i~--lvDs~GLl~~~r-~~L~~~k~~f 384 (439)
-.+|||.|+|.+|.|.++.+..... + =++.++-+ ++ +| .+.+.-.+.+.. ..--+.+..|
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~-~-~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPH-T-FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCC-C-ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 4899999999999999998876533 1 13333321 11 22 011211111111 1111122233
Q ss_pred ccccCCcCCCCCC-CCH-HHHhccCCCcEEEecc----CCCCCCCHH-HHHHHhcc
Q 013638 385 AKDPGDFMGLREG-ASL-LEVVRKVKPHVLLGLS----GVGGVFNEE-VKTYFLCF 433 (439)
Q Consensus 385 A~~~~~~~~~~~~-~sL-~eaV~~vkPtvLIG~S----~~~G~Ftee-vV~~Ma~~ 433 (439)
+++. .+ ..+ ++++.. .|+|||+- ..|.++|+| +++.|.+.
T Consensus 281 ~~Pe-------~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~G 327 (1042)
T PLN02819 281 AHPE-------HYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRKG 327 (1042)
T ss_pred cCch-------hccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcCC
Confidence 3331 23 234 468888 99999973 246789999 88888753
No 156
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=79.44 E-value=10 Score=39.16 Aligned_cols=52 Identities=29% Similarity=0.338 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHH------------------HhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 013638 300 AGVALAGLLGTVR------------------AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (439)
Q Consensus 300 aaV~LAgll~A~r------------------~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i 361 (439)
|=-++|.+|+..| ..|..|.. +++-|+|.|..|..+|+.+....+ ++
T Consensus 104 AE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g---kTvGIiG~G~IG~~va~~l~afgm------------~v 168 (324)
T COG0111 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG---KTVGIIGLGRIGRAVAKRLKAFGM------------KV 168 (324)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC---CEEEEECCCHHHHHHHHHHHhCCC------------eE
Confidence 3345777777776 33444445 999999999999999999877643 68
Q ss_pred EEEec
Q 013638 362 FLLDK 366 (439)
Q Consensus 362 ~lvDs 366 (439)
..+|+
T Consensus 169 ~~~d~ 173 (324)
T COG0111 169 IGYDP 173 (324)
T ss_pred EEECC
Confidence 88887
No 157
>PRK06487 glycerate dehydrogenase; Provisional
Probab=79.44 E-value=7.4 Score=39.65 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=45.5
Q ss_pred cccccccCc---chhHHHHHHHHHHHHHHh---------CC------------CccCCCCceEEEeCchhHHHHHHHHHH
Q 013638 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL------------SLTDFADQKIVVVGAGSAGLGVLKMAV 343 (439)
Q Consensus 288 ~~~~FNDDi---QGTaaV~LAgll~A~r~~---------g~------------~l~dl~~~riv~~GAGsAgiGiA~li~ 343 (439)
.+.+.|--- +.+|=-+++.+++..|-. |+ ...+|.++++.|+|.|..|..+|+.+.
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 366655322 345666778887776632 11 113566799999999999999999886
Q ss_pred HHHHHHcCCChhhhcCeEEEEecc
Q 013638 344 QAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 344 ~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.. |+ +|+.+|+.
T Consensus 169 ~f-----gm-------~V~~~~~~ 180 (317)
T PRK06487 169 AF-----GM-------RVLIGQLP 180 (317)
T ss_pred hC-----CC-------EEEEECCC
Confidence 54 33 67777765
No 158
>PLN02306 hydroxypyruvate reductase
Probab=79.28 E-value=8.8 Score=40.48 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=57.3
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhcccc---ccCC-cCCCC
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK---DPGD-FMGLR 395 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~---~~~~-~~~~~ 395 (439)
+|.++++.|+|.|..|..+|+++..+| |+ +++.+|+..- +.+......+.. .... .....
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~f----Gm-------~V~~~d~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQS-----TRLEKFVTAYGQFLKANGEQPVTWK 225 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcC----CC-------EEEEECCCCc-----hhhhhhhhhhccccccccccccccc
Confidence 466699999999999999999986443 33 6888887421 011100001100 0000 00000
Q ss_pred CCCCHHHHhccCCCcEEEecc----CCCCCCCHHHHHHHhc
Q 013638 396 EGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVKTYFLC 432 (439)
Q Consensus 396 ~~~sL~eaV~~vkPtvLIG~S----~~~G~FteevV~~Ma~ 432 (439)
...+|.|+++. .|+++-.. ..-|.|+++.++.|.+
T Consensus 226 ~~~~L~ell~~--sDiV~lh~Plt~~T~~lin~~~l~~MK~ 264 (386)
T PLN02306 226 RASSMEEVLRE--ADVISLHPVLDKTTYHLINKERLALMKK 264 (386)
T ss_pred ccCCHHHHHhh--CCEEEEeCCCChhhhhhcCHHHHHhCCC
Confidence 12479999988 89888631 1238899999999865
No 159
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.23 E-value=1.9 Score=40.33 Aligned_cols=31 Identities=35% Similarity=0.672 Sum_probs=24.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|.|+|||..|.|||-+++.+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999998775 43 78888874
No 160
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.17 E-value=2.6 Score=33.62 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=29.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~ 371 (439)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999888553 3 5899999887766
No 161
>PRK07411 hypothetical protein; Validated
Probab=78.97 E-value=1.7 Score=45.69 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc-
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~- 386 (439)
.+|++ .||+|+|+|.-|.-+|..|+.+.+ ++|.++|.+=+=..+ |. ++-..|..-|.
T Consensus 34 ~~L~~---~~VlivG~GGlG~~va~~La~~Gv-----------g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~ 99 (390)
T PRK07411 34 KRLKA---ASVLCIGTGGLGSPLLLYLAAAGI-----------GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKN 99 (390)
T ss_pred HHHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHH
Confidence 44556 999999999999999999988755 689999987332221 21 11111211111
Q ss_pred ---ccCCc---CCCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 ---DPGDF---MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 ---~~~~~---~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
..++. .... ...+..+.++. .|++|-+.. ..=++.++..++....+|.|
T Consensus 100 ~l~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d--~~~~r~~ln~~~~~~~~p~v 157 (390)
T PRK07411 100 RILEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTD--NFPTRYLVNDACVLLNKPNV 157 (390)
T ss_pred HHHHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEE
Confidence 11110 0000 11234556666 788887764 33466778888877777754
No 162
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=78.63 E-value=1.9 Score=45.84 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=44.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccc-cCCcCCCCCCCCHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLL 401 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~-~~~~~~~~~~~sL~ 401 (439)
.||+|+||||+ -...++-+.+.+...++ .+.|||+|-+- ..| .-+...-+.+++. ..++.- ....++.
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v-~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKV-HLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEE-EEeCCHH
Confidence 38999999996 44444444333123343 36899999863 122 1011111122221 111110 1246799
Q ss_pred HHhccCCCcEEEeccCCCC
Q 013638 402 EVVRKVKPHVLLGLSGVGG 420 (439)
Q Consensus 402 eaV~~vkPtvLIG~S~~~G 420 (439)
||+++ +|.+|-.-.++|
T Consensus 71 ~al~g--adfVi~~~~vg~ 87 (419)
T cd05296 71 EALEG--ADFVFTQIRVGG 87 (419)
T ss_pred HHhCC--CCEEEEEEeeCC
Confidence 99999 888885444443
No 163
>PRK05086 malate dehydrogenase; Provisional
Probab=78.54 E-value=6.1 Score=40.20 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=59.6
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHH
Q 013638 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (439)
Q Consensus 324 ~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~ 401 (439)
.||+|+|| |..|..+|.++... .+. ...+.++|++-. ..+. -++.+. + ......+ ....++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~--~---~~~~i~~-~~~~d~~ 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI--P---TAVKIKG-FSGEDPT 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC--C---CCceEEE-eCCCCHH
Confidence 38999999 99999999887542 122 146899997522 1111 122211 0 0000000 0134688
Q ss_pred HHhccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCCCCCC
Q 013638 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 402 eaV~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~~pi~ 439 (439)
+++++ .|++|=+.+.+ |. ..+++++.|.+++++.+|
T Consensus 65 ~~l~~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~iv 114 (312)
T PRK05086 65 PALEG--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACI 114 (312)
T ss_pred HHcCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 88988 99988666643 32 567899999999887654
No 164
>PRK08291 ectoine utilization protein EutC; Validated
Probab=77.72 E-value=5.4 Score=40.65 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=50.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
++++|+|||..|-.++..+... .++ +++.++++. .+ ........+.+... .. .....++.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~--~a~~l~~~~~~~~g-~~-v~~~~d~~~a 194 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA--KAEAYAADLRAELG-IP-VTVARDVHEA 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHhhccC-ce-EEEeCCHHHH
Confidence 6899999999988877765542 233 478888762 11 12222222211100 00 0113578999
Q ss_pred hccCCCcEEEeccCC-CCCCCHHHHHH
Q 013638 404 VRKVKPHVLLGLSGV-GGVFNEEVKTY 429 (439)
Q Consensus 404 V~~vkPtvLIG~S~~-~G~FteevV~~ 429 (439)
++. +|++|-++.. .-+|+.++++.
T Consensus 195 l~~--aDiVi~aT~s~~p~i~~~~l~~ 219 (330)
T PRK08291 195 VAG--ADIIVTTTPSEEPILKAEWLHP 219 (330)
T ss_pred Hcc--CCEEEEeeCCCCcEecHHHcCC
Confidence 987 8999876543 35678877763
No 165
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.53 E-value=5.5 Score=39.91 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.||.|+|+|..|.++|..+..+ |. ++++.|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 6899999999999999998765 32 57777764
No 166
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.49 E-value=2 Score=41.63 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
-+|+|+|||.||+..|..|... |. ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 5799999999999999888764 54 58899987554
No 167
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.28 E-value=2.2 Score=43.90 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=29.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
||+++|||.-|.-+|+.|+.+.+ ++|.++|.+=+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----------g~ItlvD~D~V 34 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDSGKV 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCCEe
Confidence 68999999999999999988755 69999998643
No 168
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=77.11 E-value=2.1 Score=41.04 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=25.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999987654 343 58899964
No 169
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=77.02 E-value=10 Score=39.51 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHhCC----------------C-ccCCCCceEEEeCchhHHHHHHHHHHHH
Q 013638 298 GTAGVALAGLLGTVRAQGL----------------S-LTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 298 GTaaV~LAgll~A~r~~g~----------------~-l~dl~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
-||-.+++-+|.++|-... + -.++.++||.|+|+|+.|..||+.|..+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc
Confidence 5677778888888774321 1 1455669999999999999999998874
No 170
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=76.73 E-value=48 Score=35.68 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=82.9
Q ss_pred cCCChhhhhHhHHHHHHHHHHhC-CceEEEEecCCCc--hHHHHHHHHhhcc-----ccc------ccCcc----hhHHH
Q 013638 241 PRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF-----CMF------NDDIQ----GTAGV 302 (439)
Q Consensus 241 ~R~~g~~y~~~vdefv~av~~~~-P~~~IqfEDf~~~--naf~iL~ryr~~~-----~~F------NDDiQ----GTaaV 302 (439)
+..+..|-.+|...|++++...- |+.-|-=+|++.. .---+.+.|+.-. +|| .-=-+ -||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44778899999999999999987 8999999999863 2223556665422 111 11122 23322
Q ss_pred HHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC
Q 013638 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (439)
Q Consensus 303 ~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~ 373 (439)
+.-+.-.|++..|.+|+. .||.|-|.|.+|.-.|+.+.+. |. +=+-+-|++|.|++.
T Consensus 190 v~~~~~~a~~~~g~~l~G---~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~ 246 (411)
T COG0334 190 VFYAIREALKALGDDLEG---ARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDE 246 (411)
T ss_pred hHHHHHHHHHHcCCCcCC---CEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecC
Confidence 222333777777877777 9999999999999999888754 43 456777899988776
No 171
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=76.39 E-value=2.3 Score=43.22 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=30.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.+|+++|+|..|.-||+.|+.+.+ ++|.++|.+=
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGV-----------g~itI~D~d~ 53 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGV-----------KSVTLHDTKP 53 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-----------CeEEEEcCCc
Confidence 999999999999999999987654 6899999873
No 172
>PRK06223 malate dehydrogenase; Reviewed
Probab=75.84 E-value=3.2 Score=41.43 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.||.|+|||..|.++|..+.. .|+ . .++++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEEC
Confidence 489999999999999987654 243 1 6999998
No 173
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.71 E-value=5.1 Score=40.14 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999988764 43 57777764
No 174
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=75.58 E-value=5.5 Score=40.09 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=53.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
||.|+|||.+|..+|..++. .|+. .+|+++|++-=...+- .+|.+......... . -...+. +.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~~-----~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~----i~~~~~-~~ 65 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGIA-----DELVLIDINEEKAEGEALDLEDALAFLPSPV-K----IKAGDY-SD 65 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHhHhhHHHHhhccCCCe-E----EEcCCH-HH
Confidence 89999999999999988754 3543 4799999853221111 12322211111110 0 011233 44
Q ss_pred hccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCCCC
Q 013638 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIPCF 437 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~~p 437 (439)
+++ .|++|=+++.| |- +=+++.+.|.++++.-
T Consensus 66 l~~--aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~ 111 (306)
T cd05291 66 CKD--ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDG 111 (306)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 666 99999777654 21 1256666777777653
No 175
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.45 E-value=3.4 Score=43.22 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.||.|+|||+-|+++|..+...
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999998764
No 176
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=75.44 E-value=2.8 Score=41.29 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=57.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc----ccCC-c
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGD-F 391 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~----~~~~-~ 391 (439)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+=+=..+ |. ++-..|.+-|. ..++ +
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v 69 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNC 69 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCC
Confidence 689999999999999998775 54 689999987442221 21 12222322221 1111 1
Q ss_pred CCC--CCC----CC-HHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 392 MGL--REG----AS-LLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 392 ~~~--~~~----~s-L~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
+.. ... .+ -.+-+++ .|++|.+.- ..-++.++-.++....+|+|
T Consensus 70 ~i~~~~~~i~~~~~~~~~f~~~--~DvVi~a~D--n~~aR~~ln~~c~~~~iplI 120 (234)
T cd01484 70 KVVPYQNKVGPEQDFNDTFFEQ--FHIIVNALD--NIIARRYVNGMLIFLIVPLI 120 (234)
T ss_pred EEEEEeccCChhhhchHHHHhC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEE
Confidence 000 000 11 1345566 788887643 34457778888887888864
No 177
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=75.02 E-value=3.5 Score=42.43 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.3
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
|+|+|||.||..+|..+.++ +.| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998554 234 478999886544
No 178
>PRK06153 hypothetical protein; Provisional
Probab=74.80 E-value=2 Score=45.54 Aligned_cols=40 Identities=25% Similarity=0.499 Sum_probs=33.2
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
.+|++ .||+|+|+|..|--|+++|+.+ |+ ++|.++|.+=+
T Consensus 172 ~kL~~---~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V 211 (393)
T PRK06153 172 AKLEG---QRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF 211 (393)
T ss_pred HHHhh---CcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe
Confidence 45566 9999999999999999998876 44 68999998744
No 179
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=74.54 E-value=6 Score=40.64 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCc-hhHHHHHHHHHHHH
Q 013638 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQA 345 (439)
Q Consensus 297 QGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GA-GsAgiGiA~li~~~ 345 (439)
-+||-++.-+++.+...+|..|++ ..+.|+|| |..|.+||+.|..-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsq---atvaivGa~G~Ia~~Iar~la~~ 190 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQ---ATVAIVGATGDIASAIARWLAPK 190 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHH---CeEEEecCCchHHHHHHHHhccc
Confidence 367888888899999999999999 99999998 99999999998663
No 180
>PRK06932 glycerate dehydrogenase; Provisional
Probab=73.85 E-value=13 Score=37.91 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.0
Q ss_pred cCCCCceEEEeCchhHHHHHHHHHHHH
Q 013638 319 TDFADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 319 ~dl~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+|.++++.|+|-|..|-.+|+++...
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f 169 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL 169 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC
Confidence 356679999999999999999987654
No 181
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=73.17 E-value=5.5 Score=43.56 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=24.5
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.+++ .+++|+|||.||.+||..+.+ .|. +++++++
T Consensus 376 ~~~~---k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR 410 (529)
T PLN02520 376 PLAG---KLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANR 410 (529)
T ss_pred CCCC---CEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcC
Confidence 4555 899999999666666555543 452 6888886
No 182
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.76 E-value=3.1 Score=42.33 Aligned_cols=34 Identities=35% Similarity=0.585 Sum_probs=28.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
||+++|||.-|.-+++.|+.+ |+ ++|.++|.+=+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCEe
Confidence 689999999999999998876 54 59999998744
No 183
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=72.25 E-value=9.4 Score=41.65 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCce-EEEEecCCCchHHHHHHHHhhcccccccC---cchhHHHHHHHHHHHHHHh---------CC----C--ccCCCC
Q 013638 263 WPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ---------GL----S--LTDFAD 323 (439)
Q Consensus 263 ~P~~-~IqfEDf~~~naf~iL~ryr~~~~~FNDD---iQGTaaV~LAgll~A~r~~---------g~----~--l~dl~~ 323 (439)
.|+. .|+.--.+..| ..+-.--+.-+++.|-- -+.+|=-++|.+++..|-. |+ . -.+|.+
T Consensus 60 ~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~g 138 (525)
T TIGR01327 60 APKLKVIGRAGVGVDN-IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYG 138 (525)
T ss_pred CCCceEEEECCcccch-hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCC
Confidence 4665 66655555444 22222222346666642 2245555677777766531 10 0 124555
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+++.|+|.|..|-.+|+.+... |+ +++.+|+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~ 170 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-----GM-------KVLAYDPY 170 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCC
Confidence 9999999999999999998654 43 68888874
No 184
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=70.73 E-value=3.9 Score=41.90 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.+|+|+|||.+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988763 4 3689999864
No 185
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=70.69 E-value=11 Score=38.68 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=37.2
Q ss_pred cccccccCc---chhHHHHHHHHHHHHHHh---------CC---------CccCCCCceEEEeCchhHHHHHHHHHH
Q 013638 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAV 343 (439)
Q Consensus 288 ~~~~FNDDi---QGTaaV~LAgll~A~r~~---------g~---------~l~dl~~~riv~~GAGsAgiGiA~li~ 343 (439)
.+++.|--- ..+|=-+++.+|+.+|-. |. .-.+|.++++.|+|.|..|..+|+.+.
T Consensus 89 gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~ 165 (323)
T PRK15409 89 KILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAH 165 (323)
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHH
Confidence 455555322 235556677777777631 10 012466699999999999999999875
No 186
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=70.55 E-value=4.4 Score=38.82 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.3
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHH
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQAA 346 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~~ 346 (439)
|+++|+||+|+|..|..-++.++.+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g 32 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG 32 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC
Confidence 44599999999999999999888753
No 187
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.53 E-value=4.5 Score=41.55 Aligned_cols=34 Identities=38% Similarity=0.618 Sum_probs=28.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D~V 34 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLDTI 34 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCCCc
Confidence 689999999999999999865 44 68999998743
No 188
>PRK06141 ornithine cyclodeaminase; Validated
Probab=70.45 E-value=18 Score=36.76 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=50.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.+++|+|+|..|..++..++.. .+. ++|+++|+. .+ ....+...+.+...+. ....++.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~--~a~~~a~~~~~~g~~~---~~~~~~~~a 186 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA--KAEALAAELRAQGFDA---EVVTDLEAA 186 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHHhcCCce---EEeCCHHHH
Confidence 7999999999999998876552 232 578888763 11 1112222221110000 113578899
Q ss_pred hccCCCcEEEeccCCC-CCCCHHHHH
Q 013638 404 VRKVKPHVLLGLSGVG-GVFNEEVKT 428 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~-G~FteevV~ 428 (439)
+++ .|++|-+++.+ -+|+.++++
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~ 210 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK 210 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC
Confidence 987 99998776543 346776664
No 189
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=70.34 E-value=13 Score=37.82 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=55.0
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc---ccccCCCCCChhhhccccccCCcCCCCCCCCH
Q 013638 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (439)
Q Consensus 325 riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G---Ll~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL 400 (439)
||.|+|| |..|..+|..++. .|+. ..++++|++- .+...+.++.+....+.... .. ....+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-~i---~~~~d- 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDVV-----KEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-EI---KISSD- 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCCC-----CEEEEEECcccccccccccchhhhchhccCCCc-EE---EECCC-
Confidence 7999998 9999999987765 3542 4799999853 11111112221100110000 00 01234
Q ss_pred HHHhccCCCcEEEeccCCC---C-----------CCCHHHHHHHhccCCCCC
Q 013638 401 LEVVRKVKPHVLLGLSGVG---G-----------VFNEEVKTYFLCFIPCFI 438 (439)
Q Consensus 401 ~eaV~~vkPtvLIG~S~~~---G-----------~FteevV~~Ma~~~~~pi 438 (439)
.+.+++ +|++|=+.+.| | -+-+++++.|.++++..+
T Consensus 67 ~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~ 116 (309)
T cd05294 67 LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTK 116 (309)
T ss_pred HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 455888 89888555433 2 245677788888877654
No 190
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.20 E-value=13 Score=38.13 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=60.7
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc--cccC-CCCCChhhhccccccCCcCCCCCCCCH
Q 013638 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (439)
Q Consensus 325 riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL--l~~~-r~~L~~~k~~fA~~~~~~~~~~~~~sL 400 (439)
||.|.|| |..|..+|..++. .|+-.|+-.-.+.|+|.+.- ..++ .-+|.+...++.+.. . -..+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~-----i~~~~ 70 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-V-----ITTDP 70 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-E-----EecCh
Confidence 7999999 9999999987664 34433223347999998742 1111 124544443443321 1 12457
Q ss_pred HHHhccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccC-CCCC
Q 013638 401 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFI-PCFI 438 (439)
Q Consensus 401 ~eaV~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~-~~pi 438 (439)
.|++++ .|++|=+.+.| |- +-+++++.+++++ +.-|
T Consensus 71 ~~~~~~--aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~i 121 (323)
T cd00704 71 EEAFKD--VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVK 121 (323)
T ss_pred HHHhCC--CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeE
Confidence 889999 99888555543 32 2356777777774 5543
No 191
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=70.16 E-value=4.2 Score=43.58 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.0
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.+|+|+|||.||+..|..+..
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHh
Confidence 799999999999999988765
No 192
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=69.95 E-value=6.6 Score=40.06 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.+|||+|+|.||+..|+.|... +- .-+|.++++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCC
Confidence 4899999999999999988553 11 13788887654
No 193
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.85 E-value=4.6 Score=39.98 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+||.|+|+|..|.++|..+..+ |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 5899999999999999988664 42 58888864
No 194
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=68.56 E-value=5.4 Score=41.38 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=51.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC--CCCCh--hhhccccc--cCCcCCCCCCC
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER--KNLDP--AAAPFAKD--PGDFMGLREGA 398 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r--~~L~~--~k~~fA~~--~~~~~~~~~~~ 398 (439)
||.|+|||+-|+.+|..+..... .+.+.=..++.|..++..+.... +.++. ....|... -++ ...-..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~----~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~--~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENAR----ALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPA--NLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC----cccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCC--CeEEEC
Confidence 68999999999999999866321 11110012444444422211100 00100 00111100 000 001135
Q ss_pred CHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCC
Q 013638 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIP 435 (439)
Q Consensus 399 sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~ 435 (439)
+|.++++. +|++| ++ +|--+-+++++.+..+..
T Consensus 75 dl~eal~~--ADiII-lA-VPs~~i~~vl~~l~~~l~ 107 (342)
T TIGR03376 75 DLVEAAKG--ADILV-FV-IPHQFLEGICKQLKGHVK 107 (342)
T ss_pred CHHHHHhc--CCEEE-EE-CChHHHHHHHHHHHhhcC
Confidence 79999988 88665 33 366688888888887643
No 195
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.49 E-value=5 Score=36.43 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=24.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.||-|+|.|..|.++|+.|..+ |. +++.+|+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc
Confidence 5899999999999999998653 43 68888863
No 196
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=68.35 E-value=5.4 Score=41.85 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=26.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.||||+|||.||+..|+.|.+. +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 4899999999999999998652 11 1379999886
No 197
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=68.23 E-value=8.6 Score=38.98 Aligned_cols=86 Identities=12% Similarity=0.191 Sum_probs=53.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.++.|+|+|.-|..-++.++.. ..+ ++|.+.|+. .+ +...+..++.+.. ..+ .....+++|+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~--~a~~f~~~~~~~~-~~~-v~~~~~~~ea 179 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD--HARAFAERFSKEF-GVD-IRPVDNAEAA 179 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH--HHHHHHHHHHHhc-CCc-EEEeCCHHHH
Confidence 7999999999888777666553 133 578877763 11 1222222332210 000 0123679999
Q ss_pred hccCCCcEEEeccCC-CCCCCHHHHHH
Q 013638 404 VRKVKPHVLLGLSGV-GGVFNEEVKTY 429 (439)
Q Consensus 404 V~~vkPtvLIG~S~~-~G~FteevV~~ 429 (439)
+++ +||++-+++. ..+|..+|++.
T Consensus 180 v~~--aDIV~taT~s~~P~~~~~~l~p 204 (301)
T PRK06407 180 LRD--ADTITSITNSDTPIFNRKYLGD 204 (301)
T ss_pred Hhc--CCEEEEecCCCCcEecHHHcCC
Confidence 999 9999976543 36788888874
No 198
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.23 E-value=5 Score=39.76 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|.|+|||..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988654 43 58888864
No 199
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.08 E-value=4.8 Score=44.75 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=27.1
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 38999999999999999888653 43 58888875
No 200
>PRK06475 salicylate hydroxylase; Provisional
Probab=68.00 E-value=4.5 Score=41.50 Aligned_cols=21 Identities=29% Similarity=0.367 Sum_probs=18.7
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999977654
No 201
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=67.89 E-value=3.2 Score=40.90 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=25.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+..|+|+|||.||+..|-.+.. .|+ ++.++|++
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~ 57 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERK 57 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 3789999999999999887644 354 57777765
No 202
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=67.85 E-value=4 Score=42.68 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=25.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..||||+|+|.||+..|+.|.. . .-+|.++|.+-
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~~ 43 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPRN 43 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCCC
Confidence 3899999999999998766521 1 13689998753
No 203
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=67.75 E-value=5.6 Score=36.54 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
|++.+|||+|+|..|.-.|+.|.++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC
Confidence 4559999999999999999888775
No 204
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=67.74 E-value=4.5 Score=42.01 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.3
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
+|+|+|||.||...|..+..+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~ 22 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA 22 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC
Confidence 699999999999999887653
No 205
>PRK07236 hypothetical protein; Provisional
Probab=67.65 E-value=5.1 Score=40.85 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~ 345 (439)
..+|+|+|||.||+..|..|...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC
Confidence 47999999999999999888764
No 206
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=67.27 E-value=4.7 Score=41.26 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=24.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.|+|+|||.||...|..+... |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999877653 54 46667765
No 207
>PRK07233 hypothetical protein; Provisional
Probab=67.26 E-value=4.5 Score=41.15 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
||+|+|||-||+..|..|.+. |. ++.++++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G~-------~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----GH-------EVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEEeC
Confidence 689999999999999887663 43 57777776
No 208
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=67.19 E-value=5.2 Score=42.56 Aligned_cols=32 Identities=34% Similarity=0.645 Sum_probs=26.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 799999999999999988754 343 68899975
No 209
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=67.16 E-value=5.2 Score=40.36 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-+|+|+|||.||+..|-.|...- +.|. ++.++|+.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 67999999999999998876630 1254 57777773
No 210
>PLN02852 ferredoxin-NADP+ reductase
Probab=66.90 E-value=7.4 Score=42.35 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=30.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----ccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITK 372 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~----GLl~~ 372 (439)
.||+|+|||.||+..|..+... ..|. +|.++|+. ||+..
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~---~~g~-------~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKA---HDGA-------RVDIIERLPTPFGLVRS 69 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhh---CCCC-------eEEEEecCCCCcceEee
Confidence 7999999999999999988763 1243 78999986 55543
No 211
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=66.89 E-value=5.6 Score=31.43 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=23.9
Q ss_pred EeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 328 ~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
|+|||.||+..|..|.+. | .+|.++++.--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 789999999999888663 3 489999986544
No 212
>PRK06184 hypothetical protein; Provisional
Probab=66.69 E-value=5.3 Score=42.53 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=27.0
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
+..|+|+|||.||+..|-.|.. .|+ ++.++|+.-
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 3789999999999999988765 455 577888753
No 213
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=66.68 E-value=5.7 Score=38.50 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=27.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
.|+|+|||-+|+.+|..|.+ .|. ++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G~-------~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RGH-------SVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TTS-------EEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeeccc
Confidence 38999999999999998876 343 7999999833
No 214
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=66.58 E-value=6.6 Score=46.39 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=33.4
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
+|.+ .||+++|||+.|+-+++.|+.+++ ..|- ..+|.++|-+=+
T Consensus 416 kL~~---~kVlvvGaGGlG~e~lknLal~Gv-~~~~-----~G~i~IvD~D~V 459 (1008)
T TIGR01408 416 KLQN---LNIFLVGCGAIGCEMLKNFALMGV-GTGK-----KGMITVTDPDLI 459 (1008)
T ss_pred HHhh---CcEEEECCChHHHHHHHHHHHhCC-CcCC-----CCeEEEECCCEe
Confidence 4555 999999999999999999888754 1111 368999998643
No 215
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.45 E-value=5.7 Score=39.34 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|.|+|+|..|.++|..+..+ |. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999877553 43 68888864
No 216
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.43 E-value=8.4 Score=41.69 Aligned_cols=152 Identities=24% Similarity=0.310 Sum_probs=87.6
Q ss_pred eeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccc
Q 013638 116 VLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIG 195 (439)
Q Consensus 116 ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 195 (439)
+..+|...+=.++..|..-+-..+==..|-+....| ++.|+ -|-. +-|= .|+-|-
T Consensus 192 v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Y---krvGk------awKR------------GYLL---YGPPGT- 246 (457)
T KOG0743|consen 192 VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFY---KRVGK------AWKR------------GYLL---YGPPGT- 246 (457)
T ss_pred cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHH---HhcCc------chhc------------ccee---eCCCCC-
Confidence 555677666667777766553332222233444444 33332 3422 1111 466554
Q ss_pred ccchhhhHHHhhcCCCCCceecEEe-eccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CceEEEEecC
Q 013638 196 IPIGKLDVYVAAAGINPQRILPVML-DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDF 273 (439)
Q Consensus 196 I~iGKl~LY~a~aGI~P~~~LPV~L-DvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~-P~~~IqfEDf 273 (439)
||+++-.|.|+-==-...-+.| .|+.| +| ..-+...- ++.+|-+|||
T Consensus 247 ---GKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~d-Lr~LL~~t~~kSIivIEDI 295 (457)
T KOG0743|consen 247 ---GKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SD-LRHLLLATPNKSILLIEDI 295 (457)
T ss_pred ---CHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HH-HHHHHHhCCCCcEEEEeec
Confidence 7999999999865222444444 44322 33 23333334 5679999999
Q ss_pred CCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCc
Q 013638 274 QMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA 331 (439)
Q Consensus 274 ~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GA 331 (439)
..+|.+=++-.++-.-|++ .-+-|||.||||++--.--.-.+ .||+||=.
T Consensus 296 --Dcs~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~---ERIivFTT 345 (457)
T KOG0743|consen 296 --DCSFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGD---ERIIVFTT 345 (457)
T ss_pred --ccccccccccccccccccC---CcceeehHHhhhhhccccccCCC---ceEEEEec
Confidence 5556655555554444444 56779999999998655444445 89999865
No 217
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.36 E-value=6.1 Score=37.73 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=21.4
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
|++.++||+|+|..|.-.|+.+..+
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ 32 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKY 32 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC
Confidence 4459999999999999988888775
No 218
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.36 E-value=5.6 Score=39.81 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.||.|+|||..|.|||..++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999888765
No 219
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=66.28 E-value=5.8 Score=42.23 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=27.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 6899999999999999888775 543 277777764
No 220
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=66.00 E-value=10 Score=36.32 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=17.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAA 347 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~ 347 (439)
+||.|+|.|..+. +|.-+...+.
T Consensus 42 ~rI~~~G~GgSa~-~A~~~a~~l~ 64 (196)
T PRK10886 42 NKILCCGNGTSAA-NAQHFAASMI 64 (196)
T ss_pred CEEEEEECcHHHH-HHHHHHHHHh
Confidence 8999999998766 6766666554
No 221
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=65.88 E-value=6.1 Score=35.63 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=28.2
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 327 v~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
+|+|+|.+|+.+++.|+... .....-+|.++|....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1122358999999766
No 222
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=65.64 E-value=5.8 Score=41.96 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 899999999999999988855 343 68888874
No 223
>PRK06847 hypothetical protein; Provisional
Probab=65.52 E-value=5.9 Score=39.77 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.8
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.+|+|+|||.||+..|..+..
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 689999999999999988755
No 224
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=65.52 E-value=6.7 Score=40.74 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=27.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
.||||+|||.||+..|..+... |- .-+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999887553 21 137999998753
No 225
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.38 E-value=5.8 Score=43.15 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=26.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3799999999999999887654 353 58889964
No 226
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.24 E-value=6.2 Score=39.08 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+||.|+|+|..|.+||..+..+ |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999988654 43 58888864
No 227
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=65.19 E-value=6.1 Score=42.13 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+||||+|+|-+|+..|..+.... + .-+|.++|++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 489999999999999998887642 1 1379999985
No 228
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.13 E-value=6.4 Score=41.09 Aligned_cols=35 Identities=37% Similarity=0.642 Sum_probs=27.1
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
|++.+++|+|+|.+|.++|+.+... | .+++++|++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 3448999999999999999888764 3 257777764
No 229
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=65.02 E-value=3 Score=42.78 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+|+|+|||-||+..|..|.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 3799999999999999998775
No 230
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=64.76 E-value=7.4 Score=39.44 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.||.|+|+|..|.++|-.++.. |+. +++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~~------~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----ELA------DLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CCC------eEEEEeC
Confidence 4899999999999999876542 431 5999998
No 231
>PRK14851 hypothetical protein; Provisional
Probab=64.72 E-value=6.1 Score=44.74 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=63.3
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--CC------CCChhhhcccc-
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r~------~L~~~k~~fA~- 386 (439)
++|++ .||+|+|+|..|..+|..|+.+.+ ++|.++|-+=+-..+ |. ++-..|..-+.
T Consensus 39 ~kL~~---~~VlIvG~GGlGs~va~~Lar~GV-----------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~ 104 (679)
T PRK14851 39 ERLAE---AKVAIPGMGGVGGVHLITMVRTGI-----------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE 104 (679)
T ss_pred HHHhc---CeEEEECcCHHHHHHHHHHHHhCC-----------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH
Confidence 34555 999999999999999988887644 689999987544332 21 12222322221
Q ss_pred ---ccCC-c--CCCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 ---DPGD-F--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 ---~~~~-~--~~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
.-++ . .... ...++.+.+++ .|++|-++.-.-.-++.+|...|....+|.|
T Consensus 105 ~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i 164 (679)
T PRK14851 105 QALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVI 164 (679)
T ss_pred HHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 1111 0 0001 11346777877 8999954431111134467777777777764
No 232
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=64.54 E-value=4.1 Score=40.95 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=26.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..|-|+|||..|-|||+....+ |+ ++|++|+.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4688999999999999887654 65 69999974
No 233
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=64.54 E-value=14 Score=35.86 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 305 Agll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
+..+.|++..+.. .. .+++|+|+|+.|...+.+... .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~~-~g---~~VlV~G~G~vG~~~~~~ak~-----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KG---RRVLVVGAGMLGLTAAAAAAA-----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 3445566555543 44 799999998777665444322 354 35777664
No 234
>PRK05442 malate dehydrogenase; Provisional
Probab=64.52 E-value=16 Score=37.60 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=47.7
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc---cccCCCCCChhhhccccccCCcCCCCCCCC
Q 013638 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL---ITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (439)
Q Consensus 324 ~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL---l~~~r~~L~~~k~~fA~~~~~~~~~~~~~s 399 (439)
-||.|+|| |..|..+|-.|+.... .+. .+. ..|.|+|.+.- +....-+|.+...++.... . -..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~~--~~~-~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~ 73 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDM--LGK--DQP-VILQLLEIPPALKALEGVVMELDDCAFPLLAGV-V-----ITDD 73 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhh--cCC--CCc-cEEEEEecCCcccccceeehhhhhhhhhhcCCc-E-----EecC
Confidence 58999998 9999999887766433 010 011 37999998542 2211224554443443221 1 1235
Q ss_pred HHHHhccCCCcEEEeccC
Q 013638 400 LLEVVRKVKPHVLLGLSG 417 (439)
Q Consensus 400 L~eaV~~vkPtvLIG~S~ 417 (439)
..|.+++ +|++|=+.+
T Consensus 74 ~y~~~~d--aDiVVitaG 89 (326)
T PRK05442 74 PNVAFKD--ADVALLVGA 89 (326)
T ss_pred hHHHhCC--CCEEEEeCC
Confidence 6788888 998884444
No 235
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.29 E-value=6.2 Score=40.00 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.7
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.+|+|+|||.||+..|-.|..
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 689999999999999987755
No 236
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=63.88 E-value=7.8 Score=39.66 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.1
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.||.|+|||+-|..+|..+..
T Consensus 8 mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 689999999999999998765
No 237
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=63.83 E-value=5.5 Score=40.66 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+|+|+|||.||+..|-.|.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcC
Confidence 5899999999999999888653
No 238
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=63.31 E-value=13 Score=37.13 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 308 l~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
+.|++..+.. .. ++++|.|||+.|...+.+... .|. ++++.+|+
T Consensus 159 ~~al~~~~~~-~g---~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGDL-QG---KRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 4555544433 34 799999999877766544333 343 35766664
No 239
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=63.29 E-value=6.5 Score=37.35 Aligned_cols=32 Identities=38% Similarity=0.581 Sum_probs=24.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.|+|+|||.||+..|-.+.+ .|+ ++.++|+.-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 38999999999999977643 454 577777764
No 240
>PRK12831 putative oxidoreductase; Provisional
Probab=63.21 E-value=6.9 Score=41.74 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=27.0
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 37999999999999999888763 43 68888863
No 241
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=63.21 E-value=6.1 Score=40.05 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=23.1
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
|+|+|||.||+..|..+.+ .|+ ++.++|++
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~ 31 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPH 31 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 7999999999999977653 354 57777754
No 242
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=62.89 E-value=7.1 Score=40.38 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=29.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~ 372 (439)
--|+|+|||.||...|..+.+. |+ ++.++|++..+-.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G~ 40 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPGA 40 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCCC
Confidence 4699999999999999988775 43 6888888766544
No 243
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=62.79 E-value=4.6 Score=40.66 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
+|||+|+|.||+..|+.+..... ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 58999999999999888754211 1248999997754
No 244
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=62.57 E-value=7.5 Score=39.42 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 799999999999999888764 34 368889886
No 245
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=62.51 E-value=26 Score=32.72 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=88.0
Q ss_pred ccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecC--ceeeccCCCCCC--cccccchhhhHHHhhcCCCCCceecEE
Q 013638 144 FRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG--SRILGLGDLGVQ--GIGIPIGKLDVYVAAAGINPQRILPVM 219 (439)
Q Consensus 144 ~r~prGlyls~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--Gm~I~iGKl~LY~a~aGI~P~~~LPV~ 219 (439)
-+++.|+-++..|.....+.+..+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|+
T Consensus 53 ~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v~ 126 (257)
T PF13407_consen 53 SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKVL 126 (257)
T ss_dssp HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEEE
T ss_pred HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceEE
Confidence 4668999999999887777777776677877776554 111222223332 66677777777665555 4444
Q ss_pred eeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCce-EEE---EecCCCchHHHHHHHHhhcccccccC
Q 013638 220 LDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQ---FEDFQMKWAFETLERYRKRFCMFNDD 295 (439)
Q Consensus 220 LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~-~Iq---fEDf~~~naf~iL~ryr~~~~~FNDD 295 (439)
+=.|.-+ .....+..+-|.+++++ +|++ .+. +.++....+.+..+++-...+ -|=
T Consensus 127 ~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~~ 185 (257)
T PF13407_consen 127 ILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VDA 185 (257)
T ss_dssp EEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EEE
T ss_pred eccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ceE
Confidence 4343221 12223457778888888 8887 444 347888888876666655432 111
Q ss_pred cchhHHHHHHHHHHHHHHhCC
Q 013638 296 IQGTAGVALAGLLGTVRAQGL 316 (439)
Q Consensus 296 iQGTaaV~LAgll~A~r~~g~ 316 (439)
|=.+....+-|++.|++-.|+
T Consensus 186 i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEESSHHHHHHHHHHHHHTTC
T ss_pred EEeCCChHHHHHHHHHHHcCC
Confidence 111222334478888888887
No 246
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=62.50 E-value=6.7 Score=41.35 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~-----~g~-------~V~lie~~ 172 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLAR-----KGY-------DVTIFEAR 172 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 799999999999999887744 343 68889875
No 247
>PRK09126 hypothetical protein; Provisional
Probab=62.33 E-value=6.8 Score=39.64 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.|+|+|||.||+..|-.+.+. |+ ++.++|+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-----G~-------~v~v~E~~ 35 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-----GL-------KVTLIERQ 35 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 6799999999999999887653 54 46667664
No 248
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=62.33 E-value=6.7 Score=45.92 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=31.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----cccccC
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKE 373 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~----GLl~~~ 373 (439)
+.||+|+|||.||+..|..+... |. ++.++|+. |++.-+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~yG 348 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRYG 348 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEcc
Confidence 38999999999999999988764 53 68889975 666544
No 249
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=62.20 E-value=27 Score=34.97 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=52.1
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCC-cCCCCCCCCHH
Q 013638 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD-FMGLREGASLL 401 (439)
Q Consensus 324 ~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~-~~~~~~~~sL~ 401 (439)
.+||.+.. ++.+||.+ ..+|+ .-|++ ++++|+.+ ..+++.-..+|....+ .++..-..||+
T Consensus 5 i~iVLVep~~~gNIG~v---ARaMK-NfGl~------eL~LV~Pr-------~~~~eeA~a~A~gA~dile~A~i~~tL~ 67 (242)
T COG0565 5 IRIVLVEPSHPGNIGSV---ARAMK-NFGLS------ELRLVNPR-------AGLDEEARALAAGARDILENAKIVDTLE 67 (242)
T ss_pred cEEEEEcCCCCccHHHH---HHHHH-hCCcc------eEEEECCC-------CCCCHHHHHHhccchhhhccCeeecCHH
Confidence 56666654 66777764 45666 57996 68888874 3355555555544322 12122457999
Q ss_pred HHhccCCCcEEEeccCCCCC
Q 013638 402 EVVRKVKPHVLLGLSGVGGV 421 (439)
Q Consensus 402 eaV~~vkPtvLIG~S~~~G~ 421 (439)
|||.. .+.+||+|+....
T Consensus 68 eAl~d--~~~v~aTtar~r~ 85 (242)
T COG0565 68 EALAD--CDLVVATTARSRD 85 (242)
T ss_pred HHhcC--CCEEEEeccccCc
Confidence 99998 9999999986543
No 250
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=62.02 E-value=51 Score=35.16 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=40.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-cccccCCCCCChhhhccccccCCcCCCCCCCCHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~e 402 (439)
.|++++|-+.-..++++.+.. .|+.. ..+. .+.+ ... ..+.+. .-+. .+...+++
T Consensus 312 krvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~-~~~~~~~~----~~~~~~-~~~~---------~D~~~l~~ 367 (432)
T TIGR01285 312 KKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAV-TTTGSPLL----QKLPVE-TVVI---------GDLEDLED 367 (432)
T ss_pred CEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEE-eCCCCHHH----HhCCcC-cEEe---------CCHHHHHH
Confidence 899999988888999988654 46642 1111 1111 000 011110 0010 12245888
Q ss_pred HhccCCCcEEEeccC
Q 013638 403 VVRKVKPHVLLGLSG 417 (439)
Q Consensus 403 aV~~vkPtvLIG~S~ 417 (439)
.+++.+||++||-|-
T Consensus 368 ~i~~~~~dliig~s~ 382 (432)
T TIGR01285 368 LACAAGADLLITNSH 382 (432)
T ss_pred HHhhcCCCEEEECcc
Confidence 999999999999774
No 251
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=61.97 E-value=6.9 Score=46.28 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=27.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.||+|+|||.||+..|..+... |. ++.++|+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 48999999999999999988653 53 68888875
No 252
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=61.76 E-value=41 Score=34.78 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCC
Q 013638 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (439)
Q Consensus 320 dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~s 399 (439)
+|.+.++-|+|.|..|..+|+.+... |+ +|.-.|++.. ++..+.+- ....+
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~F-----gm-------~v~y~~~~~~--------~~~~~~~~---------~~y~~ 193 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGF-----GM-------KVLYYDRSPN--------PEAEKELG---------ARYVD 193 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCCC--------hHHHhhcC---------ceecc
Confidence 55569999999999999999998733 33 5666666543 11111110 01233
Q ss_pred HHHHhccCCCcEEEeccC----CCCCCCHHHHHHHhc
Q 013638 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVKTYFLC 432 (439)
Q Consensus 400 L~eaV~~vkPtvLIG~S~----~~G~FteevV~~Ma~ 432 (439)
|.|.++. .|+++-..- .-++|+++.++.|.+
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk~ 228 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMKP 228 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCCC
Confidence 7777766 777664321 126677777777765
No 253
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=61.65 E-value=13 Score=37.91 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=55.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~e 402 (439)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|..-=..++. -+|.+.. +|-++. .. ...+ .+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~-~i----~~~~-~~ 69 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPT-KI----YAGD-YS 69 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCe-EE----EeCC-HH
Confidence 699999999999999987764 3553 5799999732111111 1333332 222211 00 1123 45
Q ss_pred HhccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCCCCC
Q 013638 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIPCFI 438 (439)
Q Consensus 403 aV~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~~pi 438 (439)
.+++ +|++|=+.+.| |- +=+++++.+.++++..+
T Consensus 70 ~~~~--adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~ 117 (315)
T PRK00066 70 DCKD--ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGI 117 (315)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 5787 99999655543 31 12456777777776543
No 254
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=61.64 E-value=7.3 Score=43.45 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=26.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 37999999999999999887653 43 58888875
No 255
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=61.64 E-value=8.2 Score=39.54 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=27.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..|+|+|||.+|+.+|-.+.... .| .++.++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCCC
Confidence 46999999999999998887641 13 3799999863
No 256
>PRK06270 homoserine dehydrogenase; Provisional
Probab=61.43 E-value=57 Score=33.57 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=59.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHH---HHHHcCCChhhhcCeEEEEecccccccCCCCCChhh-hccccccCC---cCCCCC
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGD---FMGLRE 396 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~---~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k-~~fA~~~~~---~~~~~~ 396 (439)
.||.++|.|..|-+++++|.+. +.++.|+.. +=.-++|++|.+...+. ++..+ ..++..... ......
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~----~vvai~d~~~~~~~~~G-i~~~~~~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDL----KVVAIADSSGSAIDPDG-LDLELALKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCCcccCcCC-CCHHHHHHHHhccCCcccCccccc
Confidence 6899999999999999998763 222234321 22457799998887652 32211 222222110 000001
Q ss_pred CCCHHHHhccCCCcEEEeccCC---CCCCCHHHHHHHhc
Q 013638 397 GASLLEVVRKVKPHVLLGLSGV---GGVFNEEVKTYFLC 432 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~S~~---~G~FteevV~~Ma~ 432 (439)
..++.|+++...+|++|=++.. ++-...++++...+
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~ 116 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE 116 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH
Confidence 2479999988789999976641 12233555444443
No 257
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=61.41 E-value=20 Score=35.91 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=24.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|-|+|.|..|..+|..+... |. ++.++|+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g~-------~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----GH-------DCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 699999999999999987653 42 56667763
No 258
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=61.28 E-value=8.5 Score=42.15 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=22.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.||+|+|||.+|+..|+.+.+ +|+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e-----~g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE-----EGL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH-----TT--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHH-----CCC-------CCeEEecC
Confidence 699999999999999998865 465 35566654
No 259
>PRK11445 putative oxidoreductase; Provisional
Probab=61.23 E-value=7.8 Score=39.26 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=18.1
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
.|+|+|||.||...|..+...
T Consensus 3 dV~IvGaGpaGl~~A~~La~~ 23 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK 23 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc
Confidence 589999999999999877553
No 260
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=61.13 E-value=11 Score=33.01 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=26.6
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 325 riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
||+++|+ |-.|-.|++.+... .|+ +=...+|++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCC
Confidence 8999999 99999999988772 344 2366778776
No 261
>PRK07589 ornithine cyclodeaminase; Validated
Probab=61.13 E-value=24 Score=36.83 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=51.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.++.|+|+|.-+..-++.++... .+ ++|+++|+. .+ ....+...+.+. .++. ....+++|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~--~a~~~~~~~~~~--~~~v-~~~~~~~~a 190 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PA--ATAKLARNLAGP--GLRI-VACRSVAEA 190 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HH--HHHHHHHHHHhc--CCcE-EEeCCHHHH
Confidence 68999999998877766666532 22 678888762 11 111222222111 1100 123679999
Q ss_pred hccCCCcEEEeccCCC---CCCCHHHHH
Q 013638 404 VRKVKPHVLLGLSGVG---GVFNEEVKT 428 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~---G~FteevV~ 428 (439)
+++ +||++.+++.. -+|..+|++
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lk 216 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVE 216 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcC
Confidence 999 99999876532 468888875
No 262
>PRK06753 hypothetical protein; Provisional
Probab=61.01 E-value=7.5 Score=39.09 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.3
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
+|+|+|||.||+..|..+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~ 22 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ 22 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999887653
No 263
>PRK15076 alpha-galactosidase; Provisional
Probab=60.76 E-value=9.4 Score=40.78 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=41.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc-CCCCCChhhhccccccCCcCCCCCCCCHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~-~r~~L~~~k~~fA~~~~~~~~~~~~~sL~e 402 (439)
.||.|+|||+.|... .++..+....++. -..++|+|.+-=..+ ...-+......+. ..+.- ....++.+
T Consensus 2 ~KIaIIGaGsvg~~~--~~~~~i~~~~~l~----~~evvLvDid~er~~~~~~l~~~~~~~~~---~~~~i-~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTK--NLLGDILSVPALR----DAEIALMDIDPERLEESEIVARKLAESLG---ASAKI-TATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHH--HHHHHHhhCccCC----CCEEEEECCCHHHHHHHHHHHHHHHHhcC---CCeEE-EEECCHHH
Confidence 589999999985443 3333332122332 257999997431100 0000111111111 11100 12457889
Q ss_pred HhccCCCcEEEeccCCC
Q 013638 403 VVRKVKPHVLLGLSGVG 419 (439)
Q Consensus 403 aV~~vkPtvLIG~S~~~ 419 (439)
++++ +|++|=..+++
T Consensus 72 al~d--ADfVv~ti~vg 86 (431)
T PRK15076 72 ALQG--ADYVINAIQVG 86 (431)
T ss_pred HhCC--CCEEeEeeeeC
Confidence 9988 88888555544
No 264
>PRK07045 putative monooxygenase; Reviewed
Probab=60.69 E-value=7.9 Score=39.39 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=18.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
-+|+|+|||.||+..|-.+.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 5899999999999999877653
No 265
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=60.66 E-value=7.4 Score=39.63 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
++|.. .+|+++|+|..|.-+|+.|+.+++ ++|.++|.+-
T Consensus 22 ~KL~~---SrVLVVG~GGLGsEVAKnLaLAGV-----------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMH---TSVALHGVAGAAAEAAKNLVLAGV-----------RAVAVADEGL 60 (287)
T ss_pred HHHhh---CeEEEECCCchHHHHHHHHHHcCC-----------CeEEEecCCc
Confidence 34555 899999999999999999887755 5899999764
No 266
>PLN02676 polyamine oxidase
Probab=60.41 E-value=17 Score=39.12 Aligned_cols=36 Identities=28% Similarity=0.559 Sum_probs=26.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
.+|+|+|||.+|++.|..+... |. +++.+++++.-+
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~-----g~------~~v~vlE~~~~~ 62 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEA-----GI------EDILILEATDRI 62 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-----CC------CcEEEecCCCCC
Confidence 6899999999999999887763 53 246666665443
No 267
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=60.34 E-value=7.5 Score=39.23 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=24.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.|+|+|||.||+..|-.+.. .|. ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999977654 354 57777765
No 268
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=60.25 E-value=8.4 Score=38.60 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
..|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 5799999999999999777663 4 37999998643
No 269
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=60.24 E-value=7.6 Score=45.92 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=27.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 3799999999999999988765 353 68889875
No 270
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=59.40 E-value=9.1 Score=37.96 Aligned_cols=32 Identities=47% Similarity=0.776 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999988764 4 268888853
No 271
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=59.27 E-value=8.7 Score=38.55 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=27.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
.|+|+|||.+|+.+|-.|.+ .|. ++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCCC
Confidence 48999999999999988764 343 68899987553
No 272
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=59.24 E-value=8.8 Score=43.40 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.+|+|+|||.||+..|..+... |. ++.++|+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 48999999999999999988653 43 68899874
No 273
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.12 E-value=8.8 Score=41.01 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.3
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
+...||+|+|+|-+|+++|+.+...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHC
Confidence 4448999999999999999998754
No 274
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.01 E-value=9.2 Score=38.08 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
++|.|+|+|..|.+||..+..+ |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5799999999999999988653 43 5888885
No 275
>PLN02268 probable polyamine oxidase
Probab=58.53 E-value=8.6 Score=39.81 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.0
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
+|+|+|||-||+..|..|.++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~ 22 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999998764
No 276
>PRK07340 ornithine cyclodeaminase; Validated
Probab=58.20 E-value=42 Score=33.96 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=47.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.+++|+|+|..|...++.++.. .+. ++|+++|+. .++ ...|+.....+.......+++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~------a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS------AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH------HHHHHHHHHhcCCeeEECCHHHH
Confidence 7999999999998888877653 233 478888873 111 11222211100000013578899
Q ss_pred hccCCCcEEEeccCCC-CCCCH
Q 013638 404 VRKVKPHVLLGLSGVG-GVFNE 424 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~-G~Fte 424 (439)
+++ .|++|-++..+ .+|..
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~ 205 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE 205 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc
Confidence 987 99999876543 45654
No 277
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=58.05 E-value=9.6 Score=39.79 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=26.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999877653 4 3699999863
No 278
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=57.78 E-value=7.8 Score=39.48 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.-
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 579999999999999977644 454 577888753
No 279
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=57.63 E-value=9.5 Score=38.94 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 589999999999999977644 465 57777754
No 280
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=57.57 E-value=6.3 Score=38.89 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
-.|+|+|||.||+..|..+.. .|+ ++.+++++.-
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~~ 55 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSLA 55 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCCC
Confidence 789999999999999987654 343 5777777643
No 281
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=57.52 E-value=14 Score=42.73 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=29.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~ 371 (439)
.+||||+|+|.||+..|+.|..... .. .-.|.+++..--+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~-~~-------~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD-AA-------NFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC-CC-------CCeEEEEECCCCCc
Confidence 3699999999999999998875321 01 13789998765443
No 282
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.42 E-value=12 Score=39.68 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.4
Q ss_pred CceEEEeCchhHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~ 344 (439)
.++++|+|+|.+|+.+|+.+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 3899999999999999888765
No 283
>PRK07877 hypothetical protein; Provisional
Probab=57.39 E-value=12 Score=42.67 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=60.9
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC--C-----CCCChhhhcccc---
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--R-----KNLDPAAAPFAK--- 386 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~--r-----~~L~~~k~~fA~--- 386 (439)
+|++ .||+|+|+| .|..+|..|+.+ |+ ..+|.++|.+=+=..+ | .++-..|..-|.
T Consensus 104 ~L~~---~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l 169 (722)
T PRK07877 104 RLGR---LRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRI 169 (722)
T ss_pred HHhc---CCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHH
Confidence 4455 999999998 888898887765 42 1589999987443221 1 112222222221
Q ss_pred -ccCC-cC--CCC---CCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCCCCCC
Q 013638 387 -DPGD-FM--GLR---EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 387 -~~~~-~~--~~~---~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~~pi~ 439 (439)
.-++ .+ ... ...++.+.+++ .|++|-++- ..=++-++...|....+|+|
T Consensus 170 ~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i 225 (722)
T PRK07877 170 AELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVL 225 (722)
T ss_pred HHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEE
Confidence 1111 00 000 11346666766 788887764 45566677777777777764
No 284
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=57.34 E-value=10 Score=40.72 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999999988765 343 58889865
No 285
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=57.23 E-value=9.7 Score=40.04 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=24.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.++|+|||.||+.+|..+.+. |. ++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~~-----G~-------~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQL-----NK-------RVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 689999999999999877642 42 57777764
No 286
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=57.17 E-value=8.6 Score=41.15 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=29.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.+|+++|+|+.|.-+++.|+.. |+ ++|.++|.+=
T Consensus 21 s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~~ 54 (425)
T cd01493 21 AHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGSK 54 (425)
T ss_pred CeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCCc
Confidence 8999999999999999888776 44 6899999863
No 287
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=57.05 E-value=9.2 Score=41.24 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=27.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
-.|||+|+|.+|+++|..+.. .|+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCC
Confidence 469999999999999987765 365 5888988643
No 288
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.94 E-value=35 Score=36.21 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=20.7
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHH
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~ 344 (439)
..+.. .|+.|+|-.+-.+++|+.+..
T Consensus 299 ~~l~g---krv~i~g~~~~~~~la~~L~e 324 (435)
T cd01974 299 QYLHG---KKFALYGDPDFLIGLTSFLLE 324 (435)
T ss_pred HhcCC---CEEEEEcChHHHHHHHHHHHH
Confidence 34445 899999988888999888875
No 289
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=56.94 E-value=8.8 Score=38.64 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=18.0
Q ss_pred EEEeCchhHHHHHHHHHHHH
Q 013638 326 IVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~ 345 (439)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 89999999999999888764
No 290
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=56.89 E-value=11 Score=37.32 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=25.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~ 371 (439)
--++|+|||+||+..|..|.+. |+ ++.+++++=-+.
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~G 53 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSPG 53 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-B
T ss_pred CCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCCC
Confidence 5799999999999999887664 54 688899874444
No 291
>PRK06834 hypothetical protein; Provisional
Probab=56.85 E-value=10 Score=40.71 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=27.0
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
++..|+|+|||.+|+..|-.+... |+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-----G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-----GV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecCC
Confidence 457899999999999999887653 54 466777653
No 292
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=56.64 E-value=9.8 Score=41.44 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 6899999999999999988764 43 57777754
No 293
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=56.61 E-value=10 Score=37.08 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=24.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
||.|+|||+.|..+|..+..+ | .+++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECC
Confidence 799999999999999887654 3 257777763
No 294
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=56.54 E-value=54 Score=33.65 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=56.2
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc--ccC-CCCCChhhhccccccCCcCCCCCCCC
Q 013638 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 399 (439)
Q Consensus 324 ~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl--~~~-r~~L~~~k~~fA~~~~~~~~~~~~~s 399 (439)
-||+|.|| |..|..+|..|+.. |+-..+....++++|.+.-. ..+ .-++.+...++..+. ....+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~------~~~~~ 71 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSV------VATTD 71 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCc------eecCC
Confidence 48999999 99999999887652 33110111379999985421 111 112332221221110 12357
Q ss_pred HHHHhccCCCcEEEeccCCCCC--CC------------HHHHHHHhccC
Q 013638 400 LLEVVRKVKPHVLLGLSGVGGV--FN------------EEVKTYFLCFI 434 (439)
Q Consensus 400 L~eaV~~vkPtvLIG~S~~~G~--Ft------------eevV~~Ma~~~ 434 (439)
+.+++++ +|++|=+.+.+.- -| +++++.|.+++
T Consensus 72 ~~~~l~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~ 118 (325)
T cd01336 72 PEEAFKD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYA 118 (325)
T ss_pred HHHHhCC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8899998 9999865554421 23 55666777774
No 295
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=56.53 E-value=9.5 Score=40.66 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.3
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
-.|+|+|||.||...|..+..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 468999999999999987655
No 296
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=56.45 E-value=7.9 Score=39.60 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=25.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 469999999999999987654 454 57777765
No 297
>PRK06199 ornithine cyclodeaminase; Validated
Probab=56.29 E-value=30 Score=36.40 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=51.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.++.++|+|.-+...++.++... ..+ ++|+++|+. .+ ....+...+.+.-..+.......+.+|+
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~---~~i------~~V~v~~r~----~~--~a~~f~~~~~~~~~~~~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC---PGI------DTIKIKGRG----QK--SLDSFATWVAETYPQITNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc---CCc------cEEEEECCC----HH--HHHHHHHHHHHhcCCCceEEEeCCHHHH
Confidence 68999999998877776665532 122 578888773 11 1222222222210000000124679999
Q ss_pred hccCCCcEEEeccC-C------CCCCCHHHHH
Q 013638 404 VRKVKPHVLLGLSG-V------GGVFNEEVKT 428 (439)
Q Consensus 404 V~~vkPtvLIG~S~-~------~G~FteevV~ 428 (439)
|+. +||++-+++ . ..+|..+|++
T Consensus 221 v~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 221 VRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 999 999997543 1 1678888886
No 298
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=56.29 E-value=34 Score=35.08 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=57.8
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 325 riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
||.|+|| |..|..+|-.|+. .|+. ..+.|+|.+ +....--+|.+.. .+.+- .+.....++.+.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~~-----~elvLiDi~-~a~g~alDL~~~~-~~~~i----~~~~~~~~~y~~ 65 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPLV-----SELALYDIV-NTPGVAADLSHIN-TPAKV----TGYLGPEELKKA 65 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEEecC-ccceeehHhHhCC-CcceE----EEecCCCchHHh
Confidence 8999999 9999999887643 4553 579999998 3222223455443 11110 000011347788
Q ss_pred hccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCCCCC
Q 013638 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIPCFI 438 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~~pi 438 (439)
+++ .|++|=+++.| |- .-+++++.+.++++.-|
T Consensus 66 ~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~ 112 (310)
T cd01337 66 LKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKAL 112 (310)
T ss_pred cCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 998 99888555543 32 23456667777776544
No 299
>PRK07588 hypothetical protein; Provisional
Probab=56.25 E-value=9.9 Score=38.69 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.8
Q ss_pred eEEEeCchhHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~ 344 (439)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 79999999999999987765
No 300
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=56.22 E-value=6.1 Score=33.45 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=26.5
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
|++.++|++|+|..|..=+++++++ | .++.++...-
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 4559999999999999887777664 2 3788877764
No 301
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=56.15 E-value=3.7 Score=34.47 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=50.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHh
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV 404 (439)
||.|+|+|..|-.....+.... .+. +=..++|++. + .-+.+++... .+...|+.|.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~~------~----~~~~~~~~~~----~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPDP------E----RAEAFAEKYG----IPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSSH------H----HHHHHHHHTT----SEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCCH------H----HHHHHHHHhc----ccchhHHHHHH
Confidence 7999999999766654443320 121 2234555531 1 1112222111 02356799999
Q ss_pred ccCCCcEEEeccCCCCCCCHHHHHHHhcc-----CCCCC
Q 013638 405 RKVKPHVLLGLSGVGGVFNEEVKTYFLCF-----IPCFI 438 (439)
Q Consensus 405 ~~vkPtvLIG~S~~~G~FteevV~~Ma~~-----~~~pi 438 (439)
+.-++|+++ +++ |.....++++...+. ++||+
T Consensus 59 ~~~~~D~V~-I~t-p~~~h~~~~~~~l~~g~~v~~EKP~ 95 (120)
T PF01408_consen 59 ADEDVDAVI-IAT-PPSSHAEIAKKALEAGKHVLVEKPL 95 (120)
T ss_dssp HHTTESEEE-EES-SGGGHHHHHHHHHHTTSEEEEESSS
T ss_pred HhhcCCEEE-Eec-CCcchHHHHHHHHHcCCEEEEEcCC
Confidence 977899988 454 455566666666553 55554
No 302
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=56.12 E-value=22 Score=36.84 Aligned_cols=99 Identities=20% Similarity=0.303 Sum_probs=57.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-cccccCCCCCChhhhccccccCCcCCCCCCCCHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~e 402 (439)
.||.++|||..|-..|-.|+. .++. +.+.|+|.. +......-+|.+...+.-.+..- ....+ .+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i----~~~~~-y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALDLSHAAAPLGSDVKI----TGDGD-YE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcchhhcchhccCceEE----ecCCC-hh
Confidence 389999999999999988833 3443 379999987 22111122444332222111110 01123 56
Q ss_pred HhccCCCcEEEeccC---CCC-----------CCCHHHHHHHhccCCCCCC
Q 013638 403 VVRKVKPHVLLGLSG---VGG-----------VFNEEVKTYFLCFIPCFIF 439 (439)
Q Consensus 403 aV~~vkPtvLIG~S~---~~G-----------~FteevV~~Ma~~~~~pi~ 439 (439)
.+++ +|+.+=+.+ .|| -+-++++++++++++..||
T Consensus 66 ~~~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~iv 114 (313)
T COG0039 66 DLKG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIV 114 (313)
T ss_pred hhcC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEE
Confidence 6777 888873333 345 2456778888888876553
No 303
>PRK08618 ornithine cyclodeaminase; Validated
Probab=56.08 E-value=32 Score=35.00 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=47.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.+++|+|+|..|-.++..+... .++ ++|.++|+. .++ .......+..... .+ .....+++++
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~--a~~~~~~~~~~~~-~~-~~~~~~~~~~ 189 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK--AYAFAQEIQSKFN-TE-IYVVNSADEA 189 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH--HHHHHHHHHHhcC-Cc-EEEeCCHHHH
Confidence 6899999999988777555442 244 578888874 111 1112222211100 00 0113568889
Q ss_pred hccCCCcEEEeccCCC-CCCCHHHHH
Q 013638 404 VRKVKPHVLLGLSGVG-GVFNEEVKT 428 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~-G~FteevV~ 428 (439)
++. .|++|-++..+ -+|+ ++++
T Consensus 190 ~~~--aDiVi~aT~s~~p~i~-~~l~ 212 (325)
T PRK08618 190 IEE--ADIIVTVTNAKTPVFS-EKLK 212 (325)
T ss_pred Hhc--CCEEEEccCCCCcchH-HhcC
Confidence 987 89998765433 3455 6554
No 304
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.06 E-value=9.7 Score=39.98 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=26.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
-.++|+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999999886653 4 3788999764
No 305
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.03 E-value=11 Score=41.96 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=28.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
..|+|+|||.+|+.+|-.|.. .|. ++.++|++..+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCCCc
Confidence 479999999999999988865 353 69999987533
No 306
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.00 E-value=25 Score=30.65 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEE
Q 013638 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIV 268 (439)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~~I 268 (439)
.|.+|-...--+..+-......+|+. |+|-+||| |.++ +.+-++|.+-+++|++.+++.+|++.|
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~p~~~i 82 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAANPDVKI 82 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 34445555544444434445556643 47888997 4433 256789999999999999999998744
Q ss_pred EE
Q 013638 269 QF 270 (439)
Q Consensus 269 qf 270 (439)
-|
T Consensus 83 i~ 84 (157)
T cd01833 83 IV 84 (157)
T ss_pred EE
Confidence 43
No 307
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=55.88 E-value=9.6 Score=41.58 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=25.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.|+|+|||.||+..|..+... | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999777552 4 3688888753
No 308
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=55.62 E-value=9.4 Score=37.20 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=31.1
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++|.+ -|++++|+|.-|..++..++.+.+ ++++++|.+
T Consensus 26 ~~l~~---s~vlvvG~GglG~~~~~~la~aGv-----------g~l~i~D~d 63 (254)
T COG0476 26 QKLKD---SRVLVVGAGGLGSPAAKYLALAGV-----------GKLTIVDFD 63 (254)
T ss_pred HHHhh---CCEEEEecChhHHHHHHHHHHcCC-----------CeEEEEcCC
Confidence 34455 899999999999999999888644 469999885
No 309
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=55.59 E-value=12 Score=40.45 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=29.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
||+++|||+.|+-+++.++.+++ ..|- ..+|.++|.+=
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv-~~g~-----~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGV-GTGE-----SGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CcCC-----CCeEEEECCCC
Confidence 68999999999999999888654 1111 26899999863
No 310
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=55.58 E-value=11 Score=41.91 Aligned_cols=34 Identities=35% Similarity=0.655 Sum_probs=27.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
+.||+|+|+|.||+..|..+... |. ++.++|+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 48999999999999999887753 43 578888764
No 311
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=55.28 E-value=10 Score=39.86 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=25.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.|+|+|||.||...|-.+.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 469999999999999987754 465 57788865
No 312
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=55.26 E-value=12 Score=40.00 Aligned_cols=32 Identities=31% Similarity=0.685 Sum_probs=25.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 799999999999999888754 353 47778765
No 313
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=55.11 E-value=9.9 Score=43.09 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.||.|+|||..|.|||..+..+ |. +++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-----G~-------~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-----GV-------PVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 4799999999999999987664 44 57777764
No 314
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=55.10 E-value=9.9 Score=37.97 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=23.8
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
|+|+|||.||+..|..|.. .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999977665 354 566777663
No 315
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=55.05 E-value=12 Score=32.79 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=25.2
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999999888764 2 3688888776
No 316
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=54.80 E-value=11 Score=39.43 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=24.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.|+|+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999887653 4 37889997
No 317
>PLN02463 lycopene beta cyclase
Probab=54.74 E-value=10 Score=40.58 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.1
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
-.|+|+|||.||..+|..+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 468999999999999987754
No 318
>PRK08013 oxidoreductase; Provisional
Probab=54.73 E-value=11 Score=38.70 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.|+|+|||.||+..|-.+.. .|+ ++.++|++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 579999999999999977644 465 57777764
No 319
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=54.72 E-value=11 Score=38.37 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|+|+|||-+|+.+|..+... |. +|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g~-------~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----GH-------EVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 689999999999999887553 43 68889886
No 320
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=54.67 E-value=10 Score=39.84 Aligned_cols=33 Identities=42% Similarity=0.778 Sum_probs=23.1
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
|||+|+|.||+..|-.... .|+ ++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999998865443 564 79999998865
No 321
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=54.48 E-value=18 Score=37.34 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=25.1
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
|+|+|||.||+.+|..+... ..|+ ++.++|+.-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCC
Confidence 79999999999999777653 1244 56677765433
No 322
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=54.43 E-value=33 Score=34.24 Aligned_cols=31 Identities=16% Similarity=0.408 Sum_probs=25.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
||.|+|.|..|..+|..+... |. +++++|+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~ 32 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRN 32 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECC
Confidence 799999999999999998663 42 57777875
No 323
>PTZ00188 adrenodoxin reductase; Provisional
Probab=54.34 E-value=15 Score=40.42 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=29.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----cccccC
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKE 373 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~----GLl~~~ 373 (439)
.||+|+|||.||+-.|..++.. .|. ++.++|+. ||+.-+
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecCCCCccEEEEe
Confidence 7999999999999999977652 243 57888875 555543
No 324
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=54.22 E-value=12 Score=38.34 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.6
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 689999999999999987755
No 325
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=54.04 E-value=13 Score=35.48 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=39.8
Q ss_pred HHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCce-EEEEecCCCchH
Q 013638 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFEDFQMKWA 278 (439)
Q Consensus 203 LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~-~IqfEDf~~~na 278 (439)
+-...+.+++ .+ ++||+|.| .+.++|.+-++.||+.+++.-|++ +|-.|.+..++.
T Consensus 51 ~a~~ia~~~a-~~--~~ld~~~N-----------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 51 VADLIAEIDA-DL--IVLDCGPN-----------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp HHHHHHHS---SE--EEEEESHH-----------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred HHHHHhcCCC-CE--EEEEeecC-----------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Confidence 3445678875 44 48999987 466899999999999999999998 888888876665
No 326
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=53.96 E-value=11 Score=37.76 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=25.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.|+|+|||-+|+.+|-.|.+. |. ++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G~-------~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----GL-------SVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCCC
Confidence 489999999999999887653 43 588888763
No 327
>PRK08244 hypothetical protein; Provisional
Probab=53.80 E-value=11 Score=39.88 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=24.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~-----~G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL-----AGV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 579999999999999988755 354 46666654
No 328
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.70 E-value=12 Score=40.03 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.8
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~ 345 (439)
++||+|+|.|-.|.++|++|...
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHc
Confidence 48999999999999999998764
No 329
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=53.61 E-value=12 Score=39.17 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=31.2
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
|++|=||++|||..|--++.+++..++ ++|-++|-+-+
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~-----------qKi~iVDfdqV 109 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGV-----------QKIRIVDFDQV 109 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcC-----------ceEEEechhhc
Confidence 444999999999999999999887655 57888887654
No 330
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.59 E-value=14 Score=43.67 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=30.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----cccccC
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITKE 373 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~----GLl~~~ 373 (439)
+.+|+|+|||.||+..|..+... |. ++.++|+. |++..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~~~~GG~l~~g 472 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEALHVVGGVLQYG 472 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecCCCCcceeecc
Confidence 37999999999999999887764 43 68888876 555443
No 331
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=53.57 E-value=28 Score=34.83 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=24.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|.|+|.|..|..+|..+... |. +++++|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 689999999999999988653 43 57777874
No 332
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=53.54 E-value=21 Score=39.45 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=37.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc--CC-CCCChhhhccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK--ER-KNLDPAAAPFAKD 387 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~--~r-~~L~~~k~~fA~~ 387 (439)
--++|+|+|..|+|||.-+.. .|+ ++.||+++-+=.- +| .+|-+.=..|+..
T Consensus 13 ~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~ 67 (532)
T COG0578 13 FDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ 67 (532)
T ss_pred CCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh
Confidence 679999999999999987655 477 5889998776532 34 3555555555543
No 333
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=53.51 E-value=11 Score=38.17 Aligned_cols=45 Identities=22% Similarity=0.418 Sum_probs=33.6
Q ss_pred CccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc
Q 013638 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (439)
Q Consensus 317 ~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~ 372 (439)
.|+.|++++|+++|.|..|--+++.|.. .|. .+|.++|-+-+=.+
T Consensus 24 ~lekl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 24 GLEKLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHHHHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 3444666999999999888777666554 565 69999999876544
No 334
>PRK07538 hypothetical protein; Provisional
Probab=53.36 E-value=12 Score=38.71 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.0
Q ss_pred eEEEeCchhHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~ 344 (439)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999877654
No 335
>PRK06823 ornithine cyclodeaminase; Validated
Probab=53.36 E-value=38 Score=34.71 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=51.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.++.++|+|.-|...++.++.. ..+ ++|+++|+. .++ ...+...+.+. .+. .....+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~--a~~~~~~~~~~--~~~-v~~~~~~~~a 189 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA--LEEYRQYAQAL--GFA-VNTTLDAAEV 189 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH--HHHHHHHHHhc--CCc-EEEECCHHHH
Confidence 6899999999888877766553 122 578888773 111 11122111111 010 0113679999
Q ss_pred hccCCCcEEEeccCC-CCCCCHHHHH
Q 013638 404 VRKVKPHVLLGLSGV-GGVFNEEVKT 428 (439)
Q Consensus 404 V~~vkPtvLIG~S~~-~G~FteevV~ 428 (439)
++. +||++-+++. .-+|..+|++
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~ 213 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ 213 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC
Confidence 998 9999976543 3678888886
No 336
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=53.33 E-value=12 Score=40.77 Aligned_cols=33 Identities=18% Similarity=0.591 Sum_probs=27.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
-.|+|+|+|..|+++|..+... |+ ++.++|+.-
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-----GL-------RCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECCC
Confidence 4699999999999999988753 54 688999853
No 337
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=53.18 E-value=19 Score=36.99 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=33.7
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 294 DDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
|+..+.-+=-+|.-+.+.......... .+++|+|||+.|+..+.... ..|. ++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~---~~V~V~GaGpIGLla~~~a~-----~~Ga------~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPG---GTVVVVGAGPIGLLAIALAK-----LLGA------SVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCC---CEEEEECCCHHHHHHHHHHH-----HcCC------ceEEEeCC
Confidence 334444333444443442233333333 49999999999998733322 2455 47998876
No 338
>PRK06185 hypothetical protein; Provisional
Probab=53.16 E-value=12 Score=38.29 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..|+|+|||.+|+..|-.+.+ .|+ ++.++|++.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 679999999999999877644 465 577788763
No 339
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=53.11 E-value=12 Score=39.10 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|||+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999887663 3 368899975
No 340
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=53.05 E-value=24 Score=36.79 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=52.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc--cccCCCCCChhhhccccccCCcCCCCCCCCHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL--l~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ 401 (439)
.+|.|+|||+=|.++|..+.+. |- .=++|..|.+=. |...|. ...|...-.--....-..+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~-----N~~yLp~i~lp~~l~at~Dl~ 66 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE-----NPKYLPGILLPPNLKATTDLA 66 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc-----CccccCCccCCcccccccCHH
Confidence 6899999999999999998774 31 136776664311 111121 111221100000011246799
Q ss_pred HHhccCCCcEE-EeccCCCCCCCHHHHHHHhccC
Q 013638 402 EVVRKVKPHVL-LGLSGVGGVFNEEVKTYFLCFI 434 (439)
Q Consensus 402 eaV~~vkPtvL-IG~S~~~G~FteevV~~Ma~~~ 434 (439)
++++. .|++ ++++ --+-+++++.|..+.
T Consensus 67 ~a~~~--ad~iv~avP---s~~~r~v~~~l~~~l 95 (329)
T COG0240 67 EALDG--ADIIVIAVP---SQALREVLRQLKPLL 95 (329)
T ss_pred HHHhc--CCEEEEECC---hHHHHHHHHHHhhhc
Confidence 99997 6655 4544 448889999986443
No 341
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=52.89 E-value=11 Score=40.34 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=27.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
-.|||+|+|.+|+++|..+... |+ ++.+++++-
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECCC
Confidence 5799999999999999988653 55 588999763
No 342
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=52.88 E-value=12 Score=39.51 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=25.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
|++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 799999999999999887653 4 368899975
No 343
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=52.81 E-value=12 Score=37.97 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..|+|+|||.+|+..|-.+.. .|+ ++.++|+.-
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 579999999999999976644 454 577888763
No 344
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=52.81 E-value=10 Score=41.49 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~ 346 (439)
+||+|+|||-||++.|..|.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g 23 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG 23 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC
Confidence 58999999999999999998864
No 345
>PRK10262 thioredoxin reductase; Provisional
Probab=52.66 E-value=13 Score=36.99 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+|+|+|||.||+..|..+...
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~ 28 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARA 28 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 7899999999999999877653
No 346
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.40 E-value=13 Score=38.76 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.3
Q ss_pred CCceEEEeCchhHHHHHHHHHHHH
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
++.+++|.|+|..|.++|+.+.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~ 27 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKL 27 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC
Confidence 348999999999999998887764
No 347
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=52.37 E-value=12 Score=39.24 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=24.4
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 79999999999998877653 4 368888875
No 348
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=52.31 E-value=13 Score=40.51 Aligned_cols=31 Identities=39% Similarity=0.737 Sum_probs=25.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
++|.|+|||..|.|||..++.+ |. .++++|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-----G~-------~V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-----GH-------TVLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5799999999999999988764 44 5777774
No 349
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=52.23 E-value=13 Score=38.22 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=25.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 579999999999999977644 465 57777764
No 350
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=52.16 E-value=15 Score=39.80 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=49.5
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCC-Chhhhcccccc-CCcCCCCCCCC
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL-DPAAAPFAKDP-GDFMGLREGAS 399 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L-~~~k~~fA~~~-~~~~~~~~~~s 399 (439)
++.||+|+||||. ..++++...+.+.+.++. +.|||+|- ..+|.++ ...-+.+.+.. .++.- ....+
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Di----d~~r~~~i~~~~~~~v~~~g~~~kv-~~ttd 70 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDI----DEERLKIIAILAKKLVEEAGAPVKV-EATTD 70 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeC----CHHHHHHHHHHHHHHHHhhCCCeEE-EEecC
Confidence 3489999999997 456788887776677775 78999996 3334221 11112233321 11110 12467
Q ss_pred HHHHhccCCCcEEE
Q 013638 400 LLEVVRKVKPHVLL 413 (439)
Q Consensus 400 L~eaV~~vkPtvLI 413 (439)
+.||+++ +|-+|
T Consensus 71 ~~eAl~g--AdfVi 82 (442)
T COG1486 71 RREALEG--ADFVI 82 (442)
T ss_pred HHHHhcC--CCEEE
Confidence 9999999 88777
No 351
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=51.92 E-value=11 Score=38.15 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.2
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
.|+|+|||.||+..|-.|..+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999887653
No 352
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=51.76 E-value=30 Score=32.06 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 307 ll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+.++...+.-... ++|+++|+|+.|..++++... .| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~---~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPG---DTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 33444444443345 799999999866665543332 34 257776654
No 353
>PRK14852 hypothetical protein; Provisional
Probab=51.66 E-value=12 Score=44.19 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
++|+. .||+|+|+|..|.-||..|+.+ |+ ++|.++|-+=+
T Consensus 328 ~kL~~---srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~V 367 (989)
T PRK14852 328 RRLLR---SRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDAY 367 (989)
T ss_pred HHHhc---CcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEe
Confidence 34555 9999999999998888888776 44 68999998744
No 354
>PRK13984 putative oxidoreductase; Provisional
Probab=51.59 E-value=14 Score=40.47 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+++|+|||.||+..|..+... |. ++.++|+.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~-----G~-------~v~vie~~ 315 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATM-----GY-------EVTVYESL 315 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 7899999999999999988653 43 57788765
No 355
>PRK07208 hypothetical protein; Provisional
Probab=51.48 E-value=14 Score=38.79 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.0
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~ 345 (439)
..+|+|+|||-||+..|..|.++
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~ 26 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR 26 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC
Confidence 36899999999999999888663
No 356
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=51.32 E-value=13 Score=38.22 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.9
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
||+|+|||.||+..|..|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999988764
No 357
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=51.32 E-value=21 Score=28.91 Aligned_cols=80 Identities=16% Similarity=0.242 Sum_probs=47.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-ecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lv-Ds~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
||.|+|+|..|.++++.+... |.. ..+|+++ +++. +.....++.+.... ...+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~~----~~~v~~~~~r~~------~~~~~~~~~~~~~~-------~~~~~~~~ 58 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GIK----PHEVIIVSSRSP------EKAAELAKEYGVQA-------TADDNEEA 58 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESSH------HHHHHHHHHCTTEE-------ESEEHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CCC----ceeEEeeccCcH------HHHHHHHHhhcccc-------ccCChHHh
Confidence 689999999999999887664 441 3577755 5521 11222222222110 12368999
Q ss_pred hccCCCcEEEeccCCCCCCCHHHHHHH
Q 013638 404 VRKVKPHVLLGLSGVGGVFNEEVKTYF 430 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~G~FteevV~~M 430 (439)
++. +|++| ++- +...-+++.+++
T Consensus 59 ~~~--advvi-lav-~p~~~~~v~~~i 81 (96)
T PF03807_consen 59 AQE--ADVVI-LAV-KPQQLPEVLSEI 81 (96)
T ss_dssp HHH--TSEEE-E-S--GGGHHHHHHHH
T ss_pred hcc--CCEEE-EEE-CHHHHHHHHHHH
Confidence 997 99888 553 444445666666
No 358
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=51.29 E-value=33 Score=36.57 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=43.5
Q ss_pred hCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCC
Q 013638 314 QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG 393 (439)
Q Consensus 314 ~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~ 393 (439)
....|.. .|+++++.+.-..++++++.+ .|+. +..+.+. ....++....+..+ .+......
T Consensus 320 ~~~~L~G---krv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~-~~~~~v~~ 380 (456)
T TIGR01283 320 YRERLKG---KKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELM-GEGTVMLD 380 (456)
T ss_pred HHHHcCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHc-CCCeEEEe
Confidence 3344455 999999888888999887654 4662 3333211 11111111111111 00000000
Q ss_pred CCCCCCHHHHhccCCCcEEEecc
Q 013638 394 LREGASLLEVVRKVKPHVLLGLS 416 (439)
Q Consensus 394 ~~~~~sL~eaV~~vkPtvLIG~S 416 (439)
..+...+++.++..+||++||-|
T Consensus 381 ~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 381 DANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred CCCHHHHHHHHhhcCCCEEEEcc
Confidence 01223588889999999999954
No 359
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=51.26 E-value=14 Score=39.29 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=20.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|+|+|||+||+-.|-.+.. .|. ++.++++.
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g~-------~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KGA-------RVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 58999999999998877743 343 68888876
No 360
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=50.63 E-value=38 Score=34.46 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=45.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.++.|+|+|.-|..-++.+... .++ ++|+++|+.- ++ ...+...+.+ . ... .....+++|+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~~----~~--~~~~~~~~~~-~-~~~-v~~~~~~~~a 189 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRSP----ER--AEAFAARLRD-L-GVP-VVAVDSAEEA 189 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SSH----HH--HHHHHHHHHC-C-CTC-EEEESSHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccCh----hH--HHHHHHhhcc-c-ccc-ceeccchhhh
Confidence 5899999999988887766654 233 6899888731 11 1122222222 0 100 0124679999
Q ss_pred hccCCCcEEEeccCCCC---CCCHHHHHH
Q 013638 404 VRKVKPHVLLGLSGVGG---VFNEEVKTY 429 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~G---~FteevV~~ 429 (439)
++. +|+++.+++... +|+.+|++.
T Consensus 190 v~~--aDii~taT~s~~~~P~~~~~~l~~ 216 (313)
T PF02423_consen 190 VRG--ADIIVTATPSTTPAPVFDAEWLKP 216 (313)
T ss_dssp HTT--SSEEEE----SSEEESB-GGGS-T
T ss_pred ccc--CCEEEEccCCCCCCccccHHHcCC
Confidence 999 999998765433 688887763
No 361
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.58 E-value=14 Score=36.28 Aligned_cols=31 Identities=39% Similarity=0.638 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
+||.|+|+|..|.++|..+... |. +++++|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeC
Confidence 5899999999999999987553 43 5788884
No 362
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=50.56 E-value=17 Score=36.50 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=29.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~ 371 (439)
.+|+|+|||-+|+.+|-.|... |. +|.++|++..-.
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~~ 40 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAGG 40 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccCC
Confidence 7899999999999998887664 43 788898877643
No 363
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=50.48 E-value=13 Score=37.79 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=25.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..|+|+|||.||+..|-.+.. .|+ ++.++|+.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 579999999999999977644 454 57788875
No 364
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=50.47 E-value=16 Score=37.83 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=26.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
.|+|+|||-||+..|..|..+ |. .+.++|+.+=+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCCCc
Confidence 599999999999999888765 43 47888875443
No 365
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=50.46 E-value=14 Score=39.07 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|||+||+..|..+.+. | +++.++|+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 4699999999999999887553 4 378999975
No 366
>PRK05868 hypothetical protein; Validated
Probab=50.41 E-value=14 Score=37.95 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.8
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.+|+|+|||.||+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999877654
No 367
>PRK09897 hypothetical protein; Provisional
Probab=50.28 E-value=16 Score=40.16 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=27.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.+|+|+|||.+|+.+|..|+.. +- .-+|.++|+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~-----~~-----~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ-----QT-----PLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc-----CC-----CCcEEEEecCC
Confidence 3799999999999999998762 11 13799999854
No 368
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=50.24 E-value=19 Score=38.38 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhcccc-ccCCcCCCCCCCCHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK-DPGDFMGLREGASLLE 402 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~-~~~~~~~~~~~~sL~e 402 (439)
.+||++|||-.|-.+|..|++- |- .+|++.|+.=.=...=......+...+. +. .+...|.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~------~d~~al~~ 64 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRSKEKCARIAELIGGKVEALQVDA------ADVDALVA 64 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCCHHHHHHHHhhccccceeEEecc------cChHHHHH
Confidence 4899999999999999988763 32 4899888731000000001000112221 11 23457999
Q ss_pred HhccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 403 VVRKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 403 aV~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
+++. .++.|.+- |+-++..++++-.+
T Consensus 65 li~~--~d~VIn~~--p~~~~~~i~ka~i~ 90 (389)
T COG1748 65 LIKD--FDLVINAA--PPFVDLTILKACIK 90 (389)
T ss_pred HHhc--CCEEEEeC--CchhhHHHHHHHHH
Confidence 9999 69998765 68888888876554
No 369
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=50.22 E-value=80 Score=34.13 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=25.3
Q ss_pred HHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCC
Q 013638 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNN 353 (439)
Q Consensus 308 l~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls 353 (439)
..++.-....|.. .|++|+|.+.-..++++.+.+ .|+.
T Consensus 312 ~~~l~~~~~~l~G---k~vaI~~~~~~~~~la~~l~E-----lGm~ 349 (475)
T PRK14478 312 WAALEPYRPRLEG---KRVLLYTGGVKSWSVVKALQE-----LGME 349 (475)
T ss_pred HHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE
Confidence 3444444444455 899998888888888887643 5764
No 370
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=50.16 E-value=16 Score=38.37 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 5699999999999999877653 4 368888873
No 371
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=50.09 E-value=42 Score=34.33 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=49.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.++.|+|+|.-|-.-++.+... .. -++|+++|+. .++ ...+...+.+...+. ....+..|+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~~--~~~~~~~~~~~g~~v---~~~~~~~ea 189 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PST--REKFALRASDYEVPV---RAATDPREA 189 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH--HHHHHHHHHhhCCcE---EEeCCHHHH
Confidence 6899999999877655444331 11 2688888872 211 112222221111000 124679999
Q ss_pred hccCCCcEEEeccC-CCCCCCHHHHH
Q 013638 404 VRKVKPHVLLGLSG-VGGVFNEEVKT 428 (439)
Q Consensus 404 V~~vkPtvLIG~S~-~~G~FteevV~ 428 (439)
++. .|++|-++. ...+|..++++
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~ 213 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS 213 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC
Confidence 987 999997553 33678888775
No 372
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=50.07 E-value=12 Score=42.44 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=25.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|||.||+..|-.|... |+ ++.++++.
T Consensus 82 ~~VlIVGgGIaGLalAlaL~r~-----Gi-------~V~V~Er~ 113 (668)
T PLN02927 82 SRVLVAGGGIGGLVFALAAKKK-----GF-------DVLVFEKD 113 (668)
T ss_pred CCEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEecc
Confidence 7999999999999998887663 54 46677764
No 373
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=49.91 E-value=14 Score=43.76 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.1
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+.||+|+|||.||+..|..+... |. ++.++|..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-----Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-----GH-------NVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEccc
Confidence 48999999999999999988763 43 57888863
No 374
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.84 E-value=16 Score=38.47 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=20.8
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
|.+.||.|+|.|-.|+++|+++...
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~ 31 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAG 31 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 4448999999999999998887653
No 375
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=49.77 E-value=13 Score=43.98 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=33.0
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
++|.+ .+|+|+|+|.-|.-||+.|+.+++ ++|.++|.+-+
T Consensus 20 ~kL~~---s~VLIiG~gGLG~EiaKnL~laGV-----------g~iti~D~d~v 59 (1008)
T TIGR01408 20 QKMAK---SNVLISGMGGLGLEIAKNLVLAGV-----------KSVTLHDTEKC 59 (1008)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCee
Confidence 34455 999999999999999999988754 68999998754
No 376
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.73 E-value=17 Score=38.23 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=19.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~ 345 (439)
..+|+|+|+|.+|+++|+.+.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~ 27 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKN 27 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC
Confidence 48999999999999998887653
No 377
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=49.49 E-value=16 Score=39.03 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=25.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
+|||+|+|+||.-.|-.|...+. .. -+|.++.+.=.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~--~~-------~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP--DA-------LSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT--CS-------SEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCC--CC-------cEEEEEecCCC
Confidence 69999999999999998888652 00 37999988733
No 378
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=49.34 E-value=19 Score=36.87 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=28.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
-.|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 5799999999999999887763 243 37999998653
No 379
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=49.30 E-value=1.4e+02 Score=28.02 Aligned_cols=80 Identities=20% Similarity=0.136 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCch
Q 013638 253 DEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG 332 (439)
Q Consensus 253 defv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAG 332 (439)
+++++++.+..|+ .|-+-|.+... ... -+++.+-..|.. +|+-...+.+.++|--.. .. ..|+|.|=|
T Consensus 2 ~~~~~~l~~~l~d-~iiv~d~G~~~-~~~-~~~~~~~~~~~~--~gsmG~~lpaAiGa~la~----~~---~Vv~i~GDG 69 (181)
T TIGR03846 2 IDAIRAIASYLED-ELVVSNIGVPS-KEL-YAIRDRPLNFYM--LGSMGLASSIGLGLALAT----DR---TVIVIDGDG 69 (181)
T ss_pred HHHHHHHHHhCCC-CEEEecCCHhH-HHH-HhhhcCCCCeee--ccccccHHHHHHHHHHcC----CC---cEEEEEcch
Confidence 5788999999994 55556777543 222 333222111111 788888888877765443 33 688999999
Q ss_pred hHHHHHHHHHHH
Q 013638 333 SAGLGVLKMAVQ 344 (439)
Q Consensus 333 sAgiGiA~li~~ 344 (439)
+..+++.++...
T Consensus 70 ~f~m~~~el~ta 81 (181)
T TIGR03846 70 SLLMNLGVLPTI 81 (181)
T ss_pred HHHhhhhHHHHH
Confidence 999998766554
No 380
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=49.29 E-value=20 Score=35.76 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=31.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHH--HcCCChhhhcCeEEEEecccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGLIT 371 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~--~~Gls~eeA~~~i~lvDs~GLl~ 371 (439)
.||+++|||.-|.-+++.|+.+.+. .-|.+. --+|.++|.+-+=.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~---g~~i~lvD~D~Ve~ 58 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPG---GLAVTVYDDDTVSE 58 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCC---CCEEEEECCCEEcc
Confidence 8999999999999999999886320 112110 01899999875543
No 381
>PLN02568 polyamine oxidase
Probab=49.21 E-value=19 Score=39.57 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+|+|+|||.||+..|..|.+.
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999998875
No 382
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=49.20 E-value=14 Score=39.92 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.4
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
..|+|+|||.+|+..|-.|..
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHh
Confidence 589999999999999977654
No 383
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=49.06 E-value=1.2e+02 Score=31.41 Aligned_cols=133 Identities=13% Similarity=0.128 Sum_probs=68.2
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEEE-EecCceeeccCCCCCCcccccch-hhhHH-----HhhcCCCCCceecEEee
Q 013638 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIV-LTDGSRILGLGDLGVQGIGIPIG-KLDVY-----VAAAGINPQRILPVMLD 221 (439)
Q Consensus 149 Glyls~~d~g~i~~~l~nwp~~~v~viV-VTDG~rILGLGDlG~~Gm~I~iG-Kl~LY-----~a~aGI~P~~~LPV~LD 221 (439)
|.|-...|...+.++|... ++++.. .+.|+++=-+=..+-...-|.++ ....+ ..=.||. .+ ..+
T Consensus 167 g~~~~~~d~~el~~lL~~~---Gi~~~~~~~~~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP---~~--~~~ 238 (406)
T cd01967 167 GEYNIGGDAWVIKPLLEEL---GIRVNATFTGDGTVDELRRAHRAKLNLVHCSRSMNYLAREMEERYGIP---YM--EVN 238 (406)
T ss_pred eccccchhHHHHHHHHHHc---CCEEEEEeCCCCCHHHHhhCccCCEEEEEChHHHHHHHHHHHHhhCCC---EE--Eec
Confidence 4443445667788888753 456654 45566655555555544444432 12222 1123444 11 000
Q ss_pred ccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCceEEEEecCCCchHHHHHHHHhhcccccccCcchhHH
Q 013638 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (439)
Q Consensus 222 vGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaa 301 (439)
| +|+ +-.++|++.+-+.+.. ...+-+.+++.+.++
T Consensus 239 -----------p--~G~-----------~~t~~~l~~l~~~lg~---------~~~~~~~i~~~~~~~------------ 273 (406)
T cd01967 239 -----------F--YGF-----------EDTSESLRKIAKFFGD---------EEKAEEVIAEEEARI------------ 273 (406)
T ss_pred -----------C--CcH-----------HHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHH------------
Confidence 1 111 2267788877777653 124555666666542
Q ss_pred HHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHH
Q 013638 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (439)
Q Consensus 302 V~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~ 343 (439)
..++......+.. .|+.|++.+.-..++++++.
T Consensus 274 ------~~~l~~~~~~l~g---krv~I~~~~~~~~~~~~~l~ 306 (406)
T cd01967 274 ------KPELEKYRERLKG---KKVIIYTGGARSWHVIAALR 306 (406)
T ss_pred ------HHHHHHHHHhccC---CEEEEEccCcchHHHHHHHH
Confidence 2222222334444 89998887777777775444
No 384
>PRK10015 oxidoreductase; Provisional
Probab=49.03 E-value=14 Score=38.86 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
-.|+|+|||.||...|-.+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 469999999999999987644 465 577888754
No 385
>PLN02985 squalene monooxygenase
Probab=48.98 E-value=17 Score=39.50 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.|+|+|||.||+..|-.+.+ .|. ++.++|+.
T Consensus 44 ~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 689999999999999977654 353 57777764
No 386
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=48.92 E-value=42 Score=34.44 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=55.6
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHHH
Q 013638 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (439)
Q Consensus 325 riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~e 402 (439)
||.|+|| |..|..+|-+|+. .|+- ..+.|+|.+. ..+. -+|.+.. ... .........++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~--a~g~a~DL~~~~----~~~-~i~~~~~~~~~~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPYV-----SELSLYDIAG--AAGVAADLSHIP----TAA-SVKGFSGEEGLEN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEecCCC--CcEEEchhhcCC----cCc-eEEEecCCCchHH
Confidence 6899999 9999999987754 2443 5799999876 2221 2454432 110 0000001124788
Q ss_pred HhccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCCCCC
Q 013638 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIPCFI 438 (439)
Q Consensus 403 aV~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~~pi 438 (439)
+++. .|++|=+.+.+ |- +=+++.+.+.++++.-|
T Consensus 64 ~~~d--aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~i 111 (312)
T TIGR01772 64 ALKG--ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAM 111 (312)
T ss_pred HcCC--CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeE
Confidence 8998 99888555543 31 22455666666666543
No 387
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=48.13 E-value=17 Score=37.45 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.0
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977644
No 388
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=48.03 E-value=8.2 Score=39.62 Aligned_cols=88 Identities=19% Similarity=0.247 Sum_probs=48.1
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhccccccCCcCCCCCCCCHHHHh
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV 404 (439)
|+|+|||..|-.+++.|.+.. .. .++.+.|++--=-+.- ..+...+..+.+- + ..+..+|.+.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~~------~~v~va~r~~~~~~~~~~~~~~~~~~~~~~----d-~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----PF------EEVTVADRNPEKAERLAEKLLGDRVEAVQV----D-VNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----CE-------EEEEEESSHHHHHHHHT--TTTTEEEEE-------TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC----CC------CcEEEEECCHHHHHHHHhhccccceeEEEE----e-cCCHHHHHHHH
Confidence 799999999999998877642 11 2788888741100000 0011111111110 0 01223589999
Q ss_pred ccCCCcEEEeccCCCCCCCHHHHHHHhc
Q 013638 405 RKVKPHVLLGLSGVGGVFNEEVKTYFLC 432 (439)
Q Consensus 405 ~~vkPtvLIG~S~~~G~FteevV~~Ma~ 432 (439)
+. .|++|-+++.. +.+.++++-.+
T Consensus 66 ~~--~dvVin~~gp~--~~~~v~~~~i~ 89 (386)
T PF03435_consen 66 RG--CDVVINCAGPF--FGEPVARACIE 89 (386)
T ss_dssp TT--SSEEEE-SSGG--GHHHHHHHHHH
T ss_pred hc--CCEEEECCccc--hhHHHHHHHHH
Confidence 99 79999988633 78888876544
No 389
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=47.93 E-value=38 Score=34.12 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=30.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
++|+|+|+|.+|+-+|..|..... +.|. +.+|.+++...++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~-~~g~-----~~~V~li~~~~~l 186 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLP-KRGL-----RGQVTLIAGASLL 186 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHH-hcCC-----CceEEEEeCCccc
Confidence 689999999999999999987664 3454 2478887544443
No 390
>PRK14694 putative mercuric reductase; Provisional
Probab=47.78 E-value=18 Score=38.27 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 5699999999999999887764 4 368888864
No 391
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=47.75 E-value=22 Score=38.47 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=51.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
.+|-|+|.|..|.++|..|... |. +++++|+. .++ ..+....-....... ....+++|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~--~~~l~~~~~~~g~~i---~~~~s~~e~ 60 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK--TEEFVKKAKEGNTRV---KGYHTLEEL 60 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH--HHHHHHhhhhcCCcc---eecCCHHHH
Confidence 4799999999999999998764 43 57888762 111 111111000000000 123578888
Q ss_pred hccC-CCcEEEeccCCCCCCCHHHHHHHhcc
Q 013638 404 VRKV-KPHVLLGLSGVGGVFNEEVKTYFLCF 433 (439)
Q Consensus 404 V~~v-kPtvLIG~S~~~G~FteevV~~Ma~~ 433 (439)
++.. +|+++| +.-.++...+++++.+..+
T Consensus 61 v~~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~ 90 (470)
T PTZ00142 61 VNSLKKPRKVI-LLIKAGEAVDETIDNLLPL 90 (470)
T ss_pred HhcCCCCCEEE-EEeCChHHHHHHHHHHHhh
Confidence 8754 588555 2323677778888776654
No 392
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=47.74 E-value=16 Score=38.20 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=26.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
-.|+|+|||.||+..|..+.+. | .++.++|++.
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 5699999999999999887553 4 3789999853
No 393
>PRK13748 putative mercuric reductase; Provisional
Probab=47.34 E-value=16 Score=39.43 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|||+||+..|..+.++ | .++.++|+.
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 5799999999999998887664 4 378888875
No 394
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=47.33 E-value=15 Score=35.74 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=25.0
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccccc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~ 372 (439)
++|+|+|+||.-+|..|.+. | ..+|.++.+-+-...
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCTT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCcc
Confidence 79999999999999887542 2 147888887665443
No 395
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=47.09 E-value=16 Score=41.53 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=25.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.+|.|+|||..|.|||-.+..+ |+ +++++|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-----G~-------~V~l~d~ 344 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASK-----GT-------PIVMKDI 344 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 4799999999999999988765 44 5777775
No 396
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.78 E-value=16 Score=38.22 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
||+|+|+|.+|+..|+.+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~ 22 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ 22 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC
Confidence 799999999999998887764
No 397
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.73 E-value=18 Score=38.41 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.||+|+|.|-.|+++|+.|...
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC
Confidence 7999999999999999998764
No 398
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=46.67 E-value=19 Score=40.23 Aligned_cols=149 Identities=13% Similarity=0.193 Sum_probs=86.1
Q ss_pred CCChhhhhHhHHHHHHHHHHhCCc-eEEEEecCCCchHHHHHHHHhhc------ccccccCcchhHHHHHHHHHHHHH--
Q 013638 242 RLEGEEYLSIVDEFMEAVHARWPK-AIVQFEDFQMKWAFETLERYRKR------FCMFNDDIQGTAGVALAGLLGTVR-- 312 (439)
Q Consensus 242 R~~g~~y~~~vdefv~av~~~~P~-~~IqfEDf~~~naf~iL~ryr~~------~~~FNDDiQGTaaV~LAgll~A~r-- 312 (439)
+++|=.=....+ |.+.|++.-.+ .+|-.=..+...-.+++++.... +|-+-|=++ ..+.+|
T Consensus 157 ~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~---------~~~~lreI 226 (588)
T COG1086 157 KIRGVPVLGRIE-IERVVEELGIQLILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKD---------LNGQLREI 226 (588)
T ss_pred EEeceeeechhH-HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH---------hccccccC
Confidence 344422223344 55555555554 57777788888888888888764 344444222 111222
Q ss_pred ----HhCCCc---------cCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCC
Q 013638 313 ----AQGLSL---------TDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (439)
Q Consensus 313 ----~~g~~l---------~dl~~~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~ 378 (439)
.-|.+. ..+++++|+|-|| ||.|-.++++|++.-. ++|.++|++=. ++.
T Consensus 227 ~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----------~~i~l~~~~E~------~~~ 289 (588)
T COG1086 227 EIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----------KEIILFSRDEY------KLY 289 (588)
T ss_pred CHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----------CEEEEecCchH------HHH
Confidence 112211 1234599999998 6889999888887522 68999987421 222
Q ss_pred hhhhccccccC--C----cCCCCCCCCHHHHhccCCCcEEEeccC
Q 013638 379 PAAAPFAKDPG--D----FMGLREGASLLEVVRKVKPHVLLGLSG 417 (439)
Q Consensus 379 ~~k~~fA~~~~--~----~~~~~~~~sL~eaV~~vkPtvLIG~S~ 417 (439)
...++|.+.-+ . .....+...+.++++..|||+++=+.+
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEEEhhh
Confidence 23333333111 0 000134567999999999999997665
No 399
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=46.63 E-value=49 Score=34.09 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=57.0
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc---ccCCCCCChhhhccccccCCcCCCCCCCC
Q 013638 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI---TKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (439)
Q Consensus 324 ~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl---~~~r~~L~~~k~~fA~~~~~~~~~~~~~s 399 (439)
-||.|+|| |..|..+|-.|+.. |+-.-+=...|.|+|.+.-. ....-+|.+...++.+.. ....+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~------~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGV------VATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCc------EEecC
Confidence 58999998 99999999877652 33210001279999986421 111124444332332211 01235
Q ss_pred HHHHhccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCC
Q 013638 400 LLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIP 435 (439)
Q Consensus 400 L~eaV~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~ 435 (439)
..+.+++ .|++|=+.+.+ |- +=+++++.++++++
T Consensus 73 ~~~~~~d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~ 120 (323)
T TIGR01759 73 PEEAFKD--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120 (323)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6788888 99998554443 31 22456677777776
No 400
>PF12227 DUF3603: Protein of unknown function (DUF3603); InterPro: IPR020909 This entry is represented by Bacteriophage phiNIT1, Orf that is a member of UPF0736. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry describes proteins of unknown function.
Probab=46.44 E-value=9.4 Score=37.34 Aligned_cols=26 Identities=42% Similarity=0.732 Sum_probs=17.8
Q ss_pred EEEEecCceeeccCCCCCCcccccchhhh
Q 013638 174 MIVLTDGSRILGLGDLGVQGIGIPIGKLD 202 (439)
Q Consensus 174 viVVTDG~rILGLGDlG~~Gm~I~iGKl~ 202 (439)
++|+|||+|||-.--. |-.|||-|+-
T Consensus 51 ~fi~TDg~~IlavDt~---gy~ipiRKSR 76 (214)
T PF12227_consen 51 CFIVTDGERILAVDTI---GYKIPIRKSR 76 (214)
T ss_pred eEEEecCCceEEEEec---CCCceeeecc
Confidence 8999999999964333 4455555543
No 401
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=46.37 E-value=36 Score=36.36 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=73.5
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccC
Q 013638 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (439)
Q Consensus 294 DDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~ 373 (439)
|.-.||+--++-|++.|. ..-+.- ..+|+.|=|--|-|+|..+... |. ++++.+-
T Consensus 186 DNrYGtgqS~~DgI~RaT---n~liaG---K~vVV~GYG~vGrG~A~~~rg~-----GA-------~ViVtEv------- 240 (420)
T COG0499 186 DNRYGTGQSLLDGILRAT---NVLLAG---KNVVVAGYGWVGRGIAMRLRGM-----GA-------RVIVTEV------- 240 (420)
T ss_pred ccccccchhHHHHHHhhh---ceeecC---ceEEEecccccchHHHHHhhcC-----CC-------eEEEEec-------
Confidence 778999999999998765 444444 8999999999999999876553 22 4553322
Q ss_pred CCCCChhhhccccccCCcCCCCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhcc
Q 013638 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCF 433 (439)
Q Consensus 374 r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~ 433 (439)
++.+.-=|.- ++ -.--++.||.+. .|++|-+++.-++++.|.++.|...
T Consensus 241 ----DPI~AleA~M----dG-f~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~MkDg 289 (420)
T COG0499 241 ----DPIRALEAAM----DG-FRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMKDG 289 (420)
T ss_pred ----CchHHHHHhh----cC-cEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhccCC
Confidence 1221111111 00 012468999998 9999999998999999999999753
No 402
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=46.35 E-value=60 Score=33.83 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhc
Q 013638 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (439)
Q Consensus 304 LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~ 383 (439)
.|+.++|=....+.. -++.|+|+|.-+-.. +.++..-.++ ++|++.|++ ++.-+.
T Consensus 116 AasavAa~~LA~~da-----~~laiIGaG~qA~~q----l~a~~~v~~~------~~I~i~~r~----------~~~~e~ 170 (330)
T COG2423 116 AASAVAAKYLARKDA-----STLAIIGAGAQARTQ----LEALKAVRDI------REIRVYSRD----------PEAAEA 170 (330)
T ss_pred HHHHHHHHHhccCCC-----cEEEEECCcHHHHHH----HHHHHhhCCc------cEEEEEcCC----------HHHHHH
Confidence 345555555555543 468999999875544 4444422232 567777663 111222
Q ss_pred cccccCCc--CCCCCCCCHHHHhccCCCcEEEeccC-CCCCCCHHHHH
Q 013638 384 FAKDPGDF--MGLREGASLLEVVRKVKPHVLLGLSG-VGGVFNEEVKT 428 (439)
Q Consensus 384 fA~~~~~~--~~~~~~~sL~eaV~~vkPtvLIG~S~-~~G~FteevV~ 428 (439)
|+...... .......|+++||++ +|+++.++. ..-+|+.+||+
T Consensus 171 ~a~~l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~ 216 (330)
T COG2423 171 FAARLRKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK 216 (330)
T ss_pred HHHHHHhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC
Confidence 33211000 000135789999999 999998754 23678888876
No 403
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=46.32 E-value=22 Score=36.96 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHH
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
.++..|++.+|.|+|.|+.|.++|..|.+.
T Consensus 10 ~~~~~L~gktIgIIG~GsmG~AlA~~L~~s 39 (330)
T PRK05479 10 ADLSLIKGKKVAIIGYGSQGHAHALNLRDS 39 (330)
T ss_pred CChhhhCCCEEEEEeeHHHHHHHHHHHHHC
Confidence 344455669999999999999999988653
No 404
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=46.19 E-value=18 Score=35.50 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=24.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
||.|+|+|+.|..+|..+..+ | .+++++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec
Confidence 799999999999999888664 3 25677766
No 405
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=46.18 E-value=26 Score=36.12 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=28.9
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..||.++|+|..|+++|-.|+.- |++ +++.++|-.
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~ 54 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVN 54 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecC
Confidence 38999999999999999888763 554 578899963
No 406
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=46.10 E-value=15 Score=38.88 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~ 346 (439)
.+++++|.|++|+|+|..+..-+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl 62 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKL 62 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhc
Confidence 89999999999999999987754
No 407
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=46.05 E-value=17 Score=37.26 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..|+|+|||.||+..|-.|.. .|+ ++.++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 579999999999999887765 454 68888886
No 408
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=46.04 E-value=20 Score=37.19 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+|+|+|||-||+..|..|.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999888774
No 409
>PRK06126 hypothetical protein; Provisional
Probab=45.93 E-value=20 Score=38.59 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~~ 40 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERKD 40 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 689999999999999977655 465 577888764
No 410
>PRK07190 hypothetical protein; Provisional
Probab=45.87 E-value=18 Score=38.88 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=24.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..|+|+|||.+|+-.|-.+.. .|+ ++.++|+.-
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 579999999999988865533 465 477777754
No 411
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=45.66 E-value=19 Score=36.17 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.||.|+|+|..|..+|..+.++ | .+++++|+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecH
Confidence 5899999999999999998775 3 257777764
No 412
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.52 E-value=26 Score=36.78 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 304 LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
|+--+-|+|..+.++.+ |+||+|||..|+.. +++.- .-|. ++|.++|-
T Consensus 155 LsV~~HAcr~~~vk~Gs----~vLV~GAGPIGl~t--~l~Ak---a~GA------~~VVi~d~ 202 (354)
T KOG0024|consen 155 LSVGVHACRRAGVKKGS----KVLVLGAGPIGLLT--GLVAK---AMGA------SDVVITDL 202 (354)
T ss_pred hhhhhhhhhhcCcccCC----eEEEECCcHHHHHH--HHHHH---HcCC------CcEEEeec
Confidence 66667899999998876 99999999987654 33332 2365 47887764
No 413
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=45.46 E-value=20 Score=36.12 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.||.|+|+|+.|.++|..+..+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~ 26 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK 26 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC
Confidence 4899999999999999988764
No 414
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=45.41 E-value=30 Score=33.13 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=40.7
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH
Q 013638 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (439)
Q Consensus 325 riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea 403 (439)
||+|.|| |-.|-.+++.+.+. | .+++.+++. ..++. +..++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d~~-----------------~~~~~~~~ 45 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLDLT-----------------DPEALERL 45 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccCCC-----------------CHHHHHHH
Confidence 6899997 98888888877652 4 267777763 11111 12358888
Q ss_pred hccCCCcEEEeccCC
Q 013638 404 VRKVKPHVLLGLSGV 418 (439)
Q Consensus 404 V~~vkPtvLIG~S~~ 418 (439)
++..+||++|=+++.
T Consensus 46 ~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 46 LRAIRPDAVVNTAAY 60 (287)
T ss_pred HHhCCCCEEEECCcc
Confidence 998899999987764
No 415
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=45.31 E-value=16 Score=37.23 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=24.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-----~G~-------~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-----KGI-------KTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-----CCC-------eEEEecCC
Confidence 369999999999999877644 465 46666653
No 416
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=45.26 E-value=68 Score=32.38 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=43.4
Q ss_pred eeEEEEecCce--eeccCCCCCCcccccchhhhHHHhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhh
Q 013638 172 VDMIVLTDGSR--ILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYL 249 (439)
Q Consensus 172 v~viVVTDG~r--ILGLGDlG~~Gm~I~iGKl~LY~a~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~ 249 (439)
++++.|+|+-. .||.-|.+.-.|.-++--+.- .+-|.+ .-||+.|++-. .|.
T Consensus 36 ~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~--V~r~~~---~p~vvaD~pfg---------------------~y~ 89 (264)
T PRK00311 36 VDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKA--VARGAP---RALVVADMPFG---------------------SYQ 89 (264)
T ss_pred CCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHH--HHhcCC---CCcEEEeCCCC---------------------Ccc
Confidence 67888877743 477777665444443322222 144554 33588998622 233
Q ss_pred HhHHHHHHHHHHhCC--c-eEEEEec
Q 013638 250 SIVDEFMEAVHARWP--K-AIVQFED 272 (439)
Q Consensus 250 ~~vdefv~av~~~~P--~-~~IqfED 272 (439)
.-+++.++.+.+.+- . ..|++||
T Consensus 90 ~~~~~av~~a~r~~~~aGa~aVkiEd 115 (264)
T PRK00311 90 ASPEQALRNAGRLMKEAGAHAVKLEG 115 (264)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 335666665555553 4 4999999
No 417
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=45.15 E-value=23 Score=37.07 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCccCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..++.|++.+|.|+|-|+-|.++|+.+.+. |+ +++..|+.
T Consensus 9 ~~~~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~ 48 (335)
T PRK13403 9 ANVELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRP 48 (335)
T ss_pred CChhhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECc
Confidence 445567779999999999999999998765 44 56666653
No 418
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=44.92 E-value=17 Score=40.58 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 6899999999999999887652 254 46777766
No 419
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.83 E-value=19 Score=38.95 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.1
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~ 345 (439)
..+++|+|||+||+..|+-|...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC
Confidence 37999999999999999888764
No 420
>PRK06392 homoserine dehydrogenase; Provisional
Probab=44.81 E-value=1e+02 Score=31.87 Aligned_cols=86 Identities=21% Similarity=0.383 Sum_probs=49.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHH-HHcCCChhhhcCeEEEEecccccccCCC-CCChhhhccccccCCcCCCC-CCCCHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAA-RMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLR-EGASLL 401 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~-~~~Gls~eeA~~~i~lvDs~GLl~~~r~-~L~~~k~~fA~~~~~~~~~~-~~~sL~ 401 (439)
||.++|.|..|-++|++|.+.-. ++.|+.. +=+.+.|++|.+..... ++..... +... ....... ...++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l----~VVaVsds~g~l~~~~Gldl~~l~~-~~~~-g~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGI----SVVSVSDSKLSYYNERGLDIGKIIS-YKEK-GRLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCe----EEEEEEECCCcccCCcCCChHHHHH-HHhc-CccccCCCCcCCHH
Confidence 79999999999999999877311 1223321 23556799998877652 2322211 1111 0000000 112577
Q ss_pred HHhccCCCcEEEeccC
Q 013638 402 EVVRKVKPHVLLGLSG 417 (439)
Q Consensus 402 eaV~~vkPtvLIG~S~ 417 (439)
+.+. .+|||+|=+++
T Consensus 76 ~ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 76 EIFE-IKPDVIVDVTP 90 (326)
T ss_pred HHhc-CCCCEEEECCC
Confidence 7665 58999998874
No 421
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=44.62 E-value=22 Score=37.73 Aligned_cols=34 Identities=32% Similarity=0.561 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
++|+|+|||-+|+..|-.|.++ |. ++.++++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-----G~-------~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-----GY-------RVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 7899999999999999888664 43 4666666533
No 422
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=44.48 E-value=18 Score=38.23 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=25.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
--++|+|||+||+..|..+.+ .|. ++.++|+.
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~-----~G~-------~V~liE~~ 34 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAE-----HGA-------KALLVEAK 34 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------cEEEeccc
Confidence 458999999999999887655 353 68888875
No 423
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=44.44 E-value=48 Score=33.31 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=16.3
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
++++|+|||..|+..+.++..
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~ 185 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQ 185 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 699999999887776665544
No 424
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=44.39 E-value=63 Score=36.60 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhCCceEEEEecCCCc----hHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEE
Q 013638 252 VDEFMEAVHARWPKAIVQFEDFQMK----WAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIV 327 (439)
Q Consensus 252 vdefv~av~~~~P~~~IqfEDf~~~----naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv 327 (439)
-++|++.++.++-+-.| ||.+.. =--.+++||...|--|+-... .++.|..-. ++ .||+
T Consensus 71 ~~~V~Eli~~L~~nGFV--rDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~~q--R~---akVl 133 (637)
T TIGR03693 71 QKRVFEIGEILYKNGFV--RDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFELS--RN---AKIL 133 (637)
T ss_pred HHHHHHHHHHHHhCCce--eecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhhhh--hc---ccEE
Confidence 56677777777765322 233211 233488999988654432211 112222111 45 9999
Q ss_pred EeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCC-c--C--CCCCCCCHHH
Q 013638 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD-F--M--GLREGASLLE 402 (439)
Q Consensus 328 ~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~-~--~--~~~~~~sL~e 402 (439)
++|.|..|.-+...| . ..|+ .+|..+|.+=..+. ...+-+. .+.|++.++ . + ......++.|
T Consensus 134 VlG~Gg~~s~lv~sL----~-~sG~------~~I~~vd~D~v~SN-lnRIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 134 AAGSGDFLTKLVRSL----I-DSGF------PRFHAIVTDAEEHA-LDRIHEL-AEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred EEecCchHHHHHHHH----H-hcCC------CcEEEEeccccchh-hhHHHHH-HHHHHHhCCCCceEeccCCcchhHHH
Confidence 999998776664444 4 4677 48888876655221 1111122 344444221 0 0 0123467999
Q ss_pred HhccCCCcEEEeccCCCCCCCHHHHHHHh
Q 013638 403 VVRKVKPHVLLGLSGVGGVFNEEVKTYFL 431 (439)
Q Consensus 403 aV~~vkPtvLIG~S~~~G~FteevV~~Ma 431 (439)
+++. .|++|=+|-.+..-.-.++.+-+
T Consensus 201 v~~~--~DiVi~vsDdy~~~~Lr~lN~ac 227 (637)
T TIGR03693 201 AFEP--ADWVLYVSDNGDIDDLHALHAFC 227 (637)
T ss_pred hhcC--CcEEEEECCCCChHHHHHHHHHH
Confidence 9999 79999888755433334444333
No 425
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.21 E-value=22 Score=37.70 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.|+|+|||+||+..|..+.+. | .++.++|.+
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4699999999999998876553 4 378899964
No 426
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=43.64 E-value=45 Score=32.95 Aligned_cols=34 Identities=38% Similarity=0.604 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHH
Q 013638 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMA 342 (439)
Q Consensus 305 Agll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li 342 (439)
+..+.++...+... . ++++|.|+|+.|...+.+.
T Consensus 150 ~ta~~~l~~~~~~~-g---~~vlV~G~G~vG~~~~~~a 183 (339)
T cd08239 150 GTAYHALRRVGVSG-R---DTVLVVGAGPVGLGALMLA 183 (339)
T ss_pred HHHHHHHHhcCCCC-C---CEEEEECCCHHHHHHHHHH
Confidence 34455555444332 4 7999999987776654443
No 427
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.64 E-value=22 Score=38.04 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=20.7
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 013638 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 321 l~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
+...+|+|+|.|-+|+++|+++...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~ 29 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARH 29 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 3447999999999999988887764
No 428
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=43.52 E-value=20 Score=37.46 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
++|+|+|||-||+..|..|.++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 4799999999999999999775
No 429
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=43.43 E-value=21 Score=38.54 Aligned_cols=32 Identities=31% Similarity=0.568 Sum_probs=24.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|||.+|+..|..+.. .|+ ++.++|+.
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~-----~G~-------~v~v~Er~ 42 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQ-----YGV-------RVLVLERW 42 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 689999999999999988755 354 45666655
No 430
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=43.41 E-value=95 Score=32.96 Aligned_cols=101 Identities=12% Similarity=0.217 Sum_probs=66.1
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCC------hhhhcccc--ccCCcCC
Q 013638 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLD------PAAAPFAK--DPGDFMG 393 (439)
Q Consensus 323 ~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~------~~k~~fA~--~~~~~~~ 393 (439)
..||.++|+|.=|..||+.+-.--. +.+.-+..=++|.++.. ..++ ++|+ ++.-.|.. +.++ .
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~--N 92 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPE--N 92 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCC--C
Confidence 3799999999999999999987533 44455666789998763 1110 1111 11112221 1111 0
Q ss_pred CCCCCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhccCC
Q 013638 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLCFIP 435 (439)
Q Consensus 394 ~~~~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~~~~ 435 (439)
.--..+|.|+++. +|+||=+ .|--|+..+.+.+..+.+
T Consensus 93 vvAv~dl~ea~~d--ADilvf~--vPhQf~~~ic~~l~g~vk 130 (372)
T KOG2711|consen 93 VVAVPDLVEAAKD--ADILVFV--VPHQFIPRICEQLKGYVK 130 (372)
T ss_pred eEecchHHHHhcc--CCEEEEe--CChhhHHHHHHHHhcccC
Confidence 0124679999999 9999843 478899999999987764
No 431
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=43.38 E-value=46 Score=33.25 Aligned_cols=36 Identities=33% Similarity=0.432 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHH
Q 013638 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMA 342 (439)
Q Consensus 304 LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li 342 (439)
.+..+.|+...+..-.. ++++|.|+|+.|..++.+.
T Consensus 162 ~~ta~~al~~~~~~~~g---~~vlI~g~g~vG~~~~~la 197 (361)
T cd08231 162 LATVLAALDRAGPVGAG---DTVVVQGAGPLGLYAVAAA 197 (361)
T ss_pred HHHHHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHH
Confidence 33345555555544345 8999999887666655433
No 432
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=43.31 E-value=1.7e+02 Score=30.99 Aligned_cols=156 Identities=13% Similarity=0.189 Sum_probs=86.2
Q ss_pred cccchHHHHHHHhhhccCCC------------ccccc-----cCChhhHHHHHhcCCCCCeeEEEEe-cCceeeccCCCC
Q 013638 129 YTPTVGLVCQNYSGLFRRPR------------GMYFS-----AKDKGEMMSMIYNWPAQQVDMIVLT-DGSRILGLGDLG 190 (439)
Q Consensus 129 YTPtVg~ac~~~s~~~r~pr------------Glyls-----~~d~g~i~~~l~nwp~~~v~viVVT-DG~rILGLGDlG 190 (439)
|+.+...++..+-..+..++ |.|.. ..|...+..+|... ++++..+. .|+.+=-+-..+
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~---Gi~v~~~~~~~~~~~ei~~~~ 212 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNEL---GLRVNAIIAGGCSVEELERAS 212 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHc---CCeEEEEeCCCCCHHHHHhcc
Confidence 44555556666555543321 55543 24556777788763 56665554 457776677777
Q ss_pred CCcccccchh-hhHHHh-----hcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC
Q 013638 191 VQGIGIPIGK-LDVYVA-----AAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (439)
Q Consensus 191 ~~Gm~I~iGK-l~LY~a-----~aGI~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P 264 (439)
-...-|.++. ..++.+ --||. .+.+-+-+|- +-.++|++++.+.+-
T Consensus 213 ~A~lniv~~~~~g~~~a~~Lee~~GiP---~~~~~~P~G~-------------------------~~T~~~l~~ia~~~g 264 (426)
T cd01972 213 EAAANVTLCLDLGYYLGAALEQRFGVP---EIKAPQPYGI-------------------------EATDKWLREIAKVLG 264 (426)
T ss_pred cCCEEEEEChhHHHHHHHHHHHHhCCC---eEecCCccCH-------------------------HHHHHHHHHHHHHhC
Confidence 6666666653 223221 12444 2211112232 236888888887763
Q ss_pred ceEEEEecCCCchHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHH
Q 013638 265 KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 265 ~~~IqfEDf~~~naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~ 344 (439)
. | ..+-+.+++.+.++ ..++.-....|+. .|++++|.+.-..++++.+..
T Consensus 265 ~-----~----~~~e~~i~~e~~~~------------------~~~l~~~~~~l~G---k~~~i~~~~~~~~~~~~~l~e 314 (426)
T cd01972 265 M-----E----AEAEAVIEREHERV------------------APEIEELRKALKG---KKAIVETGAAYGHLLIAVLRE 314 (426)
T ss_pred C-----c----HHHHHHHHHHHHHH------------------HHHHHHHHHHhCC---CEEEEEeCCccHHHHHHHHHH
Confidence 1 1 23555666666542 2222222334444 899999988888888877655
Q ss_pred H
Q 013638 345 A 345 (439)
Q Consensus 345 ~ 345 (439)
.
T Consensus 315 l 315 (426)
T cd01972 315 L 315 (426)
T ss_pred c
Confidence 3
No 433
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=43.24 E-value=69 Score=32.62 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=11.6
Q ss_pred ceEEEeCchhHHH
Q 013638 324 QKIVVVGAGSAGL 336 (439)
Q Consensus 324 ~riv~~GAGsAgi 336 (439)
.||.++|+|+.|.
T Consensus 59 grl~~~GaG~Sg~ 71 (296)
T PRK12570 59 GRLIYMGAGTSGR 71 (296)
T ss_pred CeEEEECCchhHH
Confidence 7999999998875
No 434
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=43.14 E-value=1.8e+02 Score=32.02 Aligned_cols=21 Identities=10% Similarity=0.442 Sum_probs=19.3
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
.|+.++|-..-.+|+++.|..
T Consensus 364 KrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 364 KRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred ceEEEECCHHHHHHHHHHHHH
Confidence 899999999999999998865
No 435
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=43.03 E-value=23 Score=35.01 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=25.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
||.|+|+|..|..+|..+... |. +++++|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g~-------~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----GH-------DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 799999999999999988663 32 57777774
No 436
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.93 E-value=23 Score=35.57 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=25.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
||.|+|||+.|..+|..+.++ | .++.+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecCH
Confidence 699999999999999988764 3 3577777743
No 437
>PRK06116 glutathione reductase; Validated
Probab=42.74 E-value=21 Score=37.35 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=25.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-++|+|||.||+..|..+.+. | .++.++|+.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~-----G-------~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMY-----G-------AKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecc
Confidence 589999999999998877653 4 378899975
No 438
>PLN02735 carbamoyl-phosphate synthase
Probab=42.67 E-value=29 Score=41.48 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=49.0
Q ss_pred ceEEEeCchhHHHH-------HHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCC
Q 013638 324 QKIVVVGAGSAGLG-------VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (439)
Q Consensus 324 ~riv~~GAGsAgiG-------iA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~ 396 (439)
+||+|+|+|...+| -+.+++.++. ++|. +++++|+.---......+.+. .|..+..
T Consensus 24 kkVLiiGsG~~~igqa~e~d~SG~q~~kaLk-e~G~-------~Vi~vd~np~t~~~~~~~aD~--~yi~p~~------- 86 (1102)
T PLN02735 24 KKIMILGAGPIVIGQACEFDYSGTQACKALK-EEGY-------EVVLINSNPATIMTDPETADR--TYIAPMT------- 86 (1102)
T ss_pred CEEEEECCCccccccceeecchHHHHHHHHH-HcCC-------EEEEEeCCcccccCChhhCcE--EEeCCCC-------
Confidence 69999999998776 2456788887 6787 689999865210000112221 2322211
Q ss_pred CCCHHHHhccCCCcEEEe-ccCCCC
Q 013638 397 GASLLEVVRKVKPHVLLG-LSGVGG 420 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG-~S~~~G 420 (439)
...+.++++..+||+++= +.++.|
T Consensus 87 ~e~v~~ii~~e~~D~Iip~~gg~~g 111 (1102)
T PLN02735 87 PELVEQVIAKERPDALLPTMGGQTA 111 (1102)
T ss_pred HHHHHHHHHHhCCCEEEECCCchhh
Confidence 123778888899999993 334433
No 439
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=42.66 E-value=19 Score=41.04 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=19.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
++|.|+|||..|.|||..+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~ 357 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK 357 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC
Confidence 5799999999999999888664
No 440
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=42.62 E-value=50 Score=29.45 Aligned_cols=68 Identities=16% Similarity=0.161 Sum_probs=42.5
Q ss_pred CCCCcccccchhhhHHHhhcCC---CCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCc
Q 013638 189 LGVQGIGIPIGKLDVYVAAAGI---NPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK 265 (439)
Q Consensus 189 lG~~Gm~I~iGKl~LY~a~aGI---~P~~~LPV~LDvGTnn~~Ll~Dp~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~ 265 (439)
.|.+|....-+.-.+-...... +|+. |+|-+|||+ -.+.+.. ++.+.++|.+-++++++.+++.+|+
T Consensus 38 ~g~~G~t~~~~~~~~~~~~~~~~~~~pd~---vii~~G~ND------~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 107 (199)
T cd01838 38 RGFSGYNTRWALKVLPKIFLEEKLAQPDL---VTIFFGAND------AALPGQP-QHVPLDEYKENLRKIVSHLKSLSPK 107 (199)
T ss_pred cCCCcccHHHHHHHHHHhcCccccCCceE---EEEEecCcc------ccCCCCC-CcccHHHHHHHHHHHHHHHHhhCCC
Confidence 4555555443333333333333 3433 468899984 3322211 3467899999999999999999987
Q ss_pred e
Q 013638 266 A 266 (439)
Q Consensus 266 ~ 266 (439)
+
T Consensus 108 ~ 108 (199)
T cd01838 108 T 108 (199)
T ss_pred C
Confidence 6
No 441
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=42.57 E-value=58 Score=34.54 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=42.9
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChh-hhccccccCCcC--CCCCC
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA-AAPFAKDPGDFM--GLREG 397 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~-k~~fA~~~~~~~--~~~~~ 397 (439)
.+.|++|+|-.....++++.+.+ .|+. +.. +++... +.+.+. ++..++...+.. ...+.
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~e-----lG~~-------~~~-----v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~ 361 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLE-----NGMV-------PVL-----IATGSESKKLKEKLEEDLKEYVEKCVILDGADF 361 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHH-----CCCE-------EEE-----EEeCCCChHHHHHHHHHHHhcCCceEEEeCCCH
Confidence 34899999988888899888864 3653 111 111111 111111 111111000000 00133
Q ss_pred CCHHHHhccCCCcEEEeccC
Q 013638 398 ASLLEVVRKVKPHVLLGLSG 417 (439)
Q Consensus 398 ~sL~eaV~~vkPtvLIG~S~ 417 (439)
..+++.++..+||++||-|-
T Consensus 362 ~e~~~~l~~~~~dliiG~s~ 381 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY 381 (429)
T ss_pred HHHHHHHHhcCCCEEEECch
Confidence 46888899999999999874
No 442
>PRK07121 hypothetical protein; Validated
Probab=42.10 E-value=23 Score=37.71 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
-.|||+|+|.||+..|-.+.+ .|. ++.++++...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae-----~G~-------~VillEK~~~ 54 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAA-----AGA-------RVLVLERAAG 54 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeCCCC
Confidence 679999999999998865543 343 6888887654
No 443
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=42.05 E-value=24 Score=36.67 Aligned_cols=34 Identities=44% Similarity=0.592 Sum_probs=25.2
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
|||+|+|.||+..|-...+ .|. .++.++++....
T Consensus 2 VvVVG~G~AGl~AA~~aa~-----~G~------~~V~vlEk~~~~ 35 (439)
T TIGR01813 2 VVVVGSGFAGLSAALSAKK-----AGA------ANVVLLEKMPVI 35 (439)
T ss_pred EEEECCCHHHHHHHHHHHH-----cCC------ccEEEEecCCCC
Confidence 8999999999999865543 351 268888887654
No 444
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=41.81 E-value=19 Score=34.37 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=43.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC-CCCChhhhcccccc-CCcCCCCCCCCHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDP-GDFMGLREGASLLE 402 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r-~~L~~~k~~fA~~~-~~~~~~~~~~sL~e 402 (439)
||+|+||||+-.. .++...+...+.++ ...|+|+|.+- +| +.....-+.+++.. .++.- ....++.|
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~v-~~ttd~~e 69 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDIDE----ERLEIVERLARRMVEEAGADLKV-EATTDRRE 69 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSEE-EEESSHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeEE-EEeCCHHH
Confidence 7999999998544 45555554345554 36899999852 22 11111222333321 12211 12468999
Q ss_pred HhccCCCcEEEec
Q 013638 403 VVRKVKPHVLLGL 415 (439)
Q Consensus 403 aV~~vkPtvLIG~ 415 (439)
|+++ +|-+|=.
T Consensus 70 Al~g--ADfVi~~ 80 (183)
T PF02056_consen 70 ALEG--ADFVINQ 80 (183)
T ss_dssp HHTT--ESEEEE-
T ss_pred HhCC--CCEEEEE
Confidence 9999 9998843
No 445
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=41.75 E-value=37 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=23.5
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
|+|+|.|..|..+++.|... + .++.++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 78999999999998887662 1 479999986
No 446
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.18 E-value=22 Score=37.51 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|+|+||+..|..+.+. | .++.++|+.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~-----G-------~~V~lie~~ 36 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQL-----G-------LKTAVVEKK 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4699999999999999776543 4 478899975
No 447
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.73 E-value=23 Score=37.75 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=25.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|||+||.-.|..+.+. | .++.++|++
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~-----G-------~~V~lie~~ 36 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADL-----G-------LETVCVERY 36 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEecC
Confidence 4699999999999998776553 5 378889975
No 448
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=40.73 E-value=22 Score=36.65 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++|-++|||..|-|||..+..+ |+ .++++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~-----G~-------~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALA-----GY-------DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhc-----CC-------ceEEEeCC
Confidence 6899999999999999988774 44 46777765
No 449
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=40.73 E-value=23 Score=37.22 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=24.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-++|+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~-----G-------~~V~lie~~ 34 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANH-----G-------AKVAIAEEP 34 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEecC
Confidence 489999999999988776553 4 368888874
No 450
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=40.71 E-value=55 Score=32.57 Aligned_cols=19 Identities=32% Similarity=0.756 Sum_probs=14.7
Q ss_pred ceEEEeCchhHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMA 342 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li 342 (439)
++++|+|+|+.|...+.+.
T Consensus 162 ~~vlV~G~g~vG~~~~~~a 180 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCA 180 (347)
T ss_pred CEEEEECCCHHHHHHHHHH
Confidence 7999999998877765443
No 451
>PRK06370 mercuric reductase; Validated
Probab=40.71 E-value=23 Score=37.27 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|+|+||+..|..+.+. | .++.++|+.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 37 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGL-----G-------MKVALIERG 37 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 5699999999999999887664 4 378888875
No 452
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=40.19 E-value=29 Score=36.58 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=20.0
Q ss_pred CCceEEEeCchhHHHHHHHHHHHH
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+.|++|+|...-..++++.|.+.
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~ 321 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEM 321 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHc
Confidence 348999999999999998888764
No 453
>PRK06545 prephenate dehydrogenase; Validated
Probab=40.15 E-value=65 Score=33.21 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.+|.|+|+|..|..+|..+...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999988654
No 454
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=40.01 E-value=24 Score=38.07 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=24.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
+|+|+|||-||+..|..+.. .|. ++.+++.+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr-----~G~-------~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ-----AGV-------PVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecc
Confidence 68999999999999987755 354 56777754
No 455
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=39.96 E-value=24 Score=36.84 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=18.3
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~ 345 (439)
||+|+|||-||+..|..+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~ 21 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA 21 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC
Confidence 589999999999999887663
No 456
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.94 E-value=26 Score=33.94 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=48.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHH-
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV- 403 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~ea- 403 (439)
+|+|+|+|..|..+|+.|.+. | .++.++|.+--....- +.+..--.+.-... .+...|.+|
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~~--~~~~~~~~~v~gd~----t~~~~L~~ag 63 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEEF--LADELDTHVVIGDA----TDEDVLEEAG 63 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHHH--hhhhcceEEEEecC----CCHHHHHhcC
Confidence 799999999999999998774 3 3688888753322210 11000000100000 123457777
Q ss_pred hccCCCcEEEeccCCCCCCCHHHHHHHh
Q 013638 404 VRKVKPHVLLGLSGVGGVFNEEVKTYFL 431 (439)
Q Consensus 404 V~~vkPtvLIG~S~~~G~FteevV~~Ma 431 (439)
++. .|++|-+++ .=-..-++-.||
T Consensus 64 i~~--aD~vva~t~--~d~~N~i~~~la 87 (225)
T COG0569 64 IDD--ADAVVAATG--NDEVNSVLALLA 87 (225)
T ss_pred CCc--CCEEEEeeC--CCHHHHHHHHHH
Confidence 666 999997775 223334444444
No 457
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=39.92 E-value=25 Score=39.89 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=25.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.||.|+|||..|.|||-.+... .|+ .++++|.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~----~G~-------~V~l~d~ 341 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK----AGL-------PVRIKDI 341 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH----cCC-------eEEEEeC
Confidence 5799999999999999987631 354 5777776
No 458
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=39.88 E-value=39 Score=40.21 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=47.1
Q ss_pred ceEEEeCchhHHHH-------HHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCC
Q 013638 324 QKIVVVGAGSAGLG-------VLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (439)
Q Consensus 324 ~riv~~GAGsAgiG-------iA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~ 396 (439)
+||+|+|+|...+| -+.+++.++. ++|. +++++|++---....+.+.+ ..|..+. .
T Consensus 8 ~kvlviG~G~~~igq~~E~d~sg~q~~~aL~-e~G~-------~vi~v~~np~~~~~d~~~ad--~~y~ep~-------~ 70 (1068)
T PRK12815 8 QKILVIGSGPIVIGQAAEFDYSGTQACLALK-EEGY-------QVVLVNPNPATIMTDPAPAD--TVYFEPL-------T 70 (1068)
T ss_pred CEEEEECCCcchhcchhhhhhHHHHHHHHHH-HcCC-------EEEEEeCCcchhhcCcccCC--eeEECCC-------C
Confidence 69999999998776 3568888888 6787 78999976421110011111 1121111 1
Q ss_pred CCCHHHHhccCCCcEEEec
Q 013638 397 GASLLEVVRKVKPHVLLGL 415 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~ 415 (439)
...|.++++..+||++|-+
T Consensus 71 ~e~l~~ii~~e~~D~Iip~ 89 (1068)
T PRK12815 71 VEFVKRIIAREKPDALLAT 89 (1068)
T ss_pred HHHHHHHHHHhCcCEEEEC
Confidence 1347888888999999843
No 459
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=39.64 E-value=32 Score=38.21 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=31.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCC
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER 374 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r 374 (439)
..++++|+|-||+-.|--+.+. |. +.+||.+..-|.-.+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~-----G~-------~v~LVEKepsiGGrm 163 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADM-----GF-------KVYLVEKEPSIGGRM 163 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHc-----CC-------eEEEEecCCcccccH
Confidence 5899999999999998877664 55 689999887765543
No 460
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=39.48 E-value=25 Score=37.46 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=29.6
Q ss_pred cCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccc
Q 013638 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (439)
Q Consensus 319 ~dl~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~ 371 (439)
.++++.|||++|+|+.|+=||..|... | ++++|+=+.+--.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~-----g-------a~vt~~qRs~~~~ 211 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEV-----G-------ASVTLSQRSPPHI 211 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhc-----C-------CeeEEEecCCCce
Confidence 356669999999999998887776654 2 3677766655444
No 461
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=39.41 E-value=56 Score=33.22 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=13.6
Q ss_pred ceEEEeCchhHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKM 341 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~l 341 (439)
++++|+|+|+.|...+.+
T Consensus 187 ~~VlV~G~G~iG~~a~q~ 204 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQG 204 (368)
T ss_pred CEEEEECCCHHHHHHHHH
Confidence 799999998776665444
No 462
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=39.13 E-value=37 Score=36.55 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=42.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHH-cCCChhhhcCeEEEEecccccccCCCC-CChhhhccccccC-CcCCCCCCCCH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPG-DFMGLREGASL 400 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~-~Gls~eeA~~~i~lvDs~GLl~~~r~~-L~~~k~~fA~~~~-~~~~~~~~~sL 400 (439)
.||+|+||||+ -+..|+..+.+. ..++ -..|+|+|-+. +|-+ +...-+.+++... ++.. ....++
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v-~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKF-VYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEE-EEECCH
Confidence 38999999996 444455544422 3454 36899999753 2211 1111122222211 1111 124679
Q ss_pred HHHhccCCCcEEE
Q 013638 401 LEVVRKVKPHVLL 413 (439)
Q Consensus 401 ~eaV~~vkPtvLI 413 (439)
.||+++ +|-+|
T Consensus 69 ~eAl~g--ADfVi 79 (437)
T cd05298 69 EEAFTD--ADFVF 79 (437)
T ss_pred HHHhCC--CCEEE
Confidence 999999 88887
No 463
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=39.09 E-value=48 Score=33.91 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
.||-|+|-|..|.++|.-|+++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a 22 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA 22 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC
Confidence 3799999999999999999886
No 464
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=39.07 E-value=24 Score=35.27 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=24.4
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
|.|+|||..|.++|..++. .|+. .++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~------eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELG------DVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCc------EEEEEeCC
Confidence 5799999999999887654 3442 69999985
No 465
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=39.05 E-value=28 Score=36.99 Aligned_cols=33 Identities=30% Similarity=0.658 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
.+++|+|+|+||+..|..+.+. | .++.+++++.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~-----g-------~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL-----G-------ADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEccC
Confidence 4799999999999998877653 3 3688888654
No 466
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=38.98 E-value=27 Score=36.80 Aligned_cols=34 Identities=29% Similarity=0.573 Sum_probs=25.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccccc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl 370 (439)
.++|+|||-+|.=+|+.+.+ .| +++.+||++-=|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~-----~g-------k~VLIvekR~HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQ-----LG-------KRVLIVEKRNHI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHH-----cC-------CEEEEEeccccC
Confidence 58999999999999993332 34 578888876444
No 467
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=38.90 E-value=74 Score=32.08 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=51.4
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-cccccCCCCCChhhhccccccCCcCCCCCCCCHHHHh
Q 013638 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (439)
Q Consensus 326 iv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~-GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV 404 (439)
|.|+|||..|..+|-.++. .|+. ..+.++|.+ .++.....+|.+...++.. . .. ....+ .+.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~~DL~~~~~~~~~-~-~i---~~~~~-~~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDALDLSHASAFLAT-G-TI---VRGGD-YADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHhHHHhccccCC-C-eE---EECCC-HHHh
Confidence 5799999999999865554 3553 479999973 2221111245544433211 1 00 01233 4678
Q ss_pred ccCCCcEEEeccCCC---CC-----------CCHHHHHHHhccCCC
Q 013638 405 RKVKPHVLLGLSGVG---GV-----------FNEEVKTYFLCFIPC 436 (439)
Q Consensus 405 ~~vkPtvLIG~S~~~---G~-----------FteevV~~Ma~~~~~ 436 (439)
++ .|++|=+.+.| |- +=+++++.+.++++.
T Consensus 65 ~~--aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~ 108 (300)
T cd00300 65 AD--ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPD 108 (300)
T ss_pred CC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 87 88888444432 31 123466666666654
No 468
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=38.77 E-value=64 Score=35.00 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=48.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCCCCCCCCHHHHh
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~~~~~~sL~eaV 404 (439)
.|-|+|.|..|..+|..|.+. |. +++++|+.- + .....++.+.... . .....++.|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt~----~--~~~~l~~~~~~g~-~---~~~~~s~~e~v 58 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRTP----E--KTDEFLAEHAKGK-K---IVGAYSIEEFV 58 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H--HHHHHHhhccCCC-C---ceecCCHHHHH
Confidence 378999999999999998664 43 577777631 1 1111111111000 0 01124577766
Q ss_pred ccC-CCcEEEeccCCCCCCCHHHHHHHhcc
Q 013638 405 RKV-KPHVLLGLSGVGGVFNEEVKTYFLCF 433 (439)
Q Consensus 405 ~~v-kPtvLIG~S~~~G~FteevV~~Ma~~ 433 (439)
+.. +|+++| ++-.+|...++++..+..+
T Consensus 59 ~~l~~~dvIi-l~v~~~~~v~~Vi~~l~~~ 87 (467)
T TIGR00873 59 QSLERPRKIM-LMVKAGAPVDAVINQLLPL 87 (467)
T ss_pred hhcCCCCEEE-EECCCcHHHHHHHHHHHhh
Confidence 543 477555 2333566777777766654
No 469
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=38.76 E-value=30 Score=37.12 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~ 345 (439)
++|||+|+|..|+-||..|...
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~ 226 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKV 226 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHh
Confidence 9999999999999999988764
No 470
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=38.73 E-value=25 Score=39.19 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=27.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
-.|||+|+|..|.++|..+... |+ ++.++|+.-+
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~r-----Gl-------~V~LvE~~d~ 105 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATR-----GL-------RVGLVEREDF 105 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEecccc
Confidence 4699999999999999988763 55 5889998643
No 471
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.80 E-value=34 Score=34.64 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=26.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
||.|+|+|..|..+|..+.. .|+. ..++++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~~-----~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGLA-----SEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCCC-----CEEEEEECC
Confidence 79999999999999887665 3542 579999974
No 472
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=37.70 E-value=26 Score=37.11 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=19.9
Q ss_pred CceEEEeCchhHHHH-HHHHHHHH
Q 013638 323 DQKIVVVGAGSAGLG-VLKMAVQA 345 (439)
Q Consensus 323 ~~riv~~GAGsAgiG-iA~li~~~ 345 (439)
.++|+|+|.|-+|++ +|++|.+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~ 30 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNL 30 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhC
Confidence 378999999999999 79888764
No 473
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=37.69 E-value=61 Score=36.44 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.||.|+|+|..|..+|..+... |.. .+++.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~~-----~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GLA-----REVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----CEEEEEECC
Confidence 5899999999999999887653 431 358888874
No 474
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=37.64 E-value=24 Score=36.92 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.|+|+|||.+|+..|-.|.+.-. ..|+ ++.++|++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~-~~G~-------~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPL-TKDL-------KVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcc-cCCC-------eEEEEeCC
Confidence 48999999999999977654100 0354 57888873
No 475
>PLN02661 Putative thiazole synthesis
Probab=37.56 E-value=33 Score=36.18 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=24.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
-.|+|+|||.||+..|-.+... .|+ ++.++|+...
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~----~g~-------kV~viEk~~~ 127 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKN----PNV-------KVAIIEQSVS 127 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHc----CCC-------eEEEEecCcc
Confidence 6789999999998888776531 132 5777776543
No 476
>PRK14727 putative mercuric reductase; Provisional
Probab=37.52 E-value=28 Score=37.13 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-.++|+|||+||+..|..+.+. | +++.++|+.
T Consensus 17 ~dvvvIG~G~aG~~~a~~~~~~-----g-------~~v~~ie~~ 48 (479)
T PRK14727 17 LHVAIIGSGSAAFAAAIKAAEH-----G-------ARVTIIEGA 48 (479)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 4799999999999999888664 4 367788765
No 477
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=37.43 E-value=30 Score=37.38 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
.+|+|+|||-||+-.|-.+.. .|+ ++.++|.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-----~Gl-------~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-----RGV-------PVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEEccCc
Confidence 589999999999999877755 464 5788886543
No 478
>PTZ00367 squalene epoxidase; Provisional
Probab=37.36 E-value=37 Score=37.60 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=24.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-+|+|+|||.||...|..+.. .|. ++.++++.
T Consensus 34 ~dViIVGaGiaGlalA~aLar-----~G~-------~V~VlEr~ 65 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSK-----QGR-------KVLMLERD 65 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----cCC-------EEEEEccc
Confidence 689999999999999987755 343 46666654
No 479
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=37.33 E-value=1e+02 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=16.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAA 347 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~ 347 (439)
.||.|+|.|+.+. +|..+...+.
T Consensus 34 ~~I~i~G~G~S~~-~A~~~~~~l~ 56 (177)
T cd05006 34 GKILICGNGGSAA-DAQHFAAELV 56 (177)
T ss_pred CEEEEEeCcHHHH-HHHHHHHHHh
Confidence 6999999997665 5555555443
No 480
>PTZ00058 glutathione reductase; Provisional
Probab=37.28 E-value=29 Score=38.30 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=25.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
--++|+|||+||...|..+.+. | +++.++|++
T Consensus 49 yDvvVIG~G~aG~~aA~~aa~~-----G-------~~ValIEk~ 80 (561)
T PTZ00058 49 YDLIVIGGGSGGMAAARRAARN-----K-------AKVALVEKD 80 (561)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-----C-------CeEEEEecc
Confidence 4699999999999998876654 4 368888865
No 481
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=37.27 E-value=33 Score=36.23 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..|+|+|||-+|+.+|-.|.+. ..| .++.++|+.-
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~---~~G-------~~V~vlE~~~ 59 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQ---RPA-------LDVLVLEADL 59 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHh---CCC-------CeEEEEeCCc
Confidence 5699999999999999887764 113 3688999753
No 482
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=37.25 E-value=73 Score=31.52 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.4
Q ss_pred ceEEEeCchhHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMA 342 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li 342 (439)
++++|+|+|+.|...+.+.
T Consensus 146 ~~vlV~G~G~vG~~a~q~a 164 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLT 164 (308)
T ss_pred CcEEEECCCHHHHHHHHHH
Confidence 6899999998777665433
No 483
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=37.16 E-value=39 Score=27.58 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=25.6
Q ss_pred ccccccccCCChhhhhHhHHHHHHHHHHhCCc
Q 013638 234 LYLGLRQPRLEGEEYLSIVDEFMEAVHARWPK 265 (439)
Q Consensus 234 ~YlG~r~~R~~g~~y~~~vdefv~av~~~~P~ 265 (439)
+| |++...-..+||.+=|++||+.+.+..+.
T Consensus 4 My-~~~~~~r~s~ey~~Gv~~Fi~~A~~~~~~ 34 (77)
T PF13963_consen 4 MY-RWDNKDRFSPEYIEGVEEFIDFAFSNPSN 34 (77)
T ss_pred cc-CCCCCCCCCHHHHHHHHHHHHHHHhcccC
Confidence 47 77767777889999999999999888753
No 484
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=37.05 E-value=27 Score=41.02 Aligned_cols=32 Identities=41% Similarity=0.672 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
.+|+|+|||.||+..|..+.. .|+ ++.++|+.
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar-----~G~-------~V~liD~~ 195 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAAR-----AGA-------RVILVDEQ 195 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 589999999999999986644 354 58899985
No 485
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=37.03 E-value=67 Score=29.02 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=17.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~ 346 (439)
.||.|+|.|+.+. +|..+...+
T Consensus 12 ~rI~~~G~G~S~~-~A~~~a~~~ 33 (154)
T TIGR00441 12 GKVLICGNGGSAC-DAQHFAAEL 33 (154)
T ss_pred CEEEEEeCcHHHH-HHHHHHHHh
Confidence 8999999999875 666665544
No 486
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=36.85 E-value=32 Score=37.08 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=26.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
-|+|+|||-+|+.+|..|... .-| .+|.++|+.
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~---~~g-------~~V~VlEk~ 34 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLREL---EPN-------WSITLIERL 34 (483)
T ss_pred cEEEECchHHHHHHHHHHHHh---CCC-------CeEEEEEcC
Confidence 379999999999999998774 123 368888884
No 487
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=36.84 E-value=30 Score=37.38 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
.||.|+|+|..|.+||..++.+ |. +++++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 4799999999999999998764 43 5667776
No 488
>PRK02106 choline dehydrogenase; Validated
Probab=36.80 E-value=27 Score=38.00 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.1
Q ss_pred eEEEeCchhHHHHHHHHHHH
Q 013638 325 KIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 325 riv~~GAGsAgiGiA~li~~ 344 (439)
-++|+|+|+||.-+|..|.+
T Consensus 7 D~iIVG~G~aG~vvA~rLae 26 (560)
T PRK02106 7 DYIIIGAGSAGCVLANRLSE 26 (560)
T ss_pred cEEEECCcHHHHHHHHHHHh
Confidence 58999999999999998876
No 489
>PLN02697 lycopene epsilon cyclase
Probab=36.77 E-value=26 Score=38.48 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=17.0
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
-.|+|+|||.||+..|..+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak 129 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK 129 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 358999999999999876654
No 490
>PLN02740 Alcohol dehydrogenase-like
Probab=36.76 E-value=43 Score=34.23 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=21.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
++++|+|+|+.|...+.+... .|. ++++.+|+
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~-----~G~------~~Vi~~~~ 231 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARA-----RGA------SKIIGVDI 231 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CCC------CcEEEEcC
Confidence 699999999887776554433 343 35666665
No 491
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=36.76 E-value=37 Score=31.74 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 322 ~~~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++.+++|.|| |..|..+|+.+++ +|. ++++++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~-----~G~-------~vi~~~r~ 38 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAE-----AGA-------DIVGAGRS 38 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEcCc
Confidence 4489999998 4456666666544 453 68888764
No 492
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=36.69 E-value=66 Score=32.51 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=21.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs 366 (439)
++++|+|+|+.|...+.+... .|. ++++.+|+
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~-----~G~------~~Vi~~~~ 217 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKI-----AGA------SRIIGVDI 217 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEeC
Confidence 799999998877766553332 354 35777765
No 493
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=36.55 E-value=33 Score=36.09 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=25.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~G 368 (439)
..|||+|+|.||+..|-.+.+ .|+ ++.++++..
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~-----~G~-------~V~vlEk~~ 37 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAARE-----AGA-------SVLLLEAAP 37 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCCC
Confidence 679999999999998876543 454 577888754
No 494
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=36.53 E-value=44 Score=35.24 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=25.8
Q ss_pred HHHHHHhCCCccCCCCceEEEeCchhHHHHHHHHHHHH
Q 013638 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (439)
Q Consensus 308 l~A~r~~g~~l~dl~~~riv~~GAGsAgiGiA~li~~~ 345 (439)
..++......+.. .|++|+|-+.-..++++.+.+.
T Consensus 262 ~~~l~~~~~~l~G---krv~i~gd~~~~~~l~~~L~el 296 (407)
T TIGR01279 262 WRALEPHTQLLRG---KKIFFFGDNLLELPLARFLKRC 296 (407)
T ss_pred HHHHHHHHHhcCC---CEEEEECCchHHHHHHHHHHHC
Confidence 3444444445555 9999999999999999888773
No 495
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=36.53 E-value=65 Score=32.29 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=16.3
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQ 344 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~ 344 (439)
++++|+|||+.|...+.+...
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~ 188 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKA 188 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 799999999888876555443
No 496
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=36.04 E-value=39 Score=33.86 Aligned_cols=81 Identities=23% Similarity=0.350 Sum_probs=43.9
Q ss_pred CCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccccccCCCCCChhhhccccccCCcCC-CCCCCC
Q 013638 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMG-LREGAS 399 (439)
Q Consensus 322 ~~~riv~~GA-GsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GLl~~~r~~L~~~k~~fA~~~~~~~~-~~~~~s 399 (439)
+..+|+|.|| |-.|..+++.+++. | .+++.+|++-- ....... ..........+.. ..+..+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~---~~~~~~~-~~~~~~~~~~~~~Dl~~~~~ 66 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPP---TSPNLFE-LLNLAKKIEDHFGDIRDAAK 66 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCc---cchhHHH-HHhhcCCceEEEccCCCHHH
Confidence 3479999997 77777777776653 4 26777776521 1011100 0000000000000 012345
Q ss_pred HHHHhccCCCcEEEeccCC
Q 013638 400 LLEVVRKVKPHVLLGLSGV 418 (439)
Q Consensus 400 L~eaV~~vkPtvLIG~S~~ 418 (439)
+.++++..+||++|=+.+.
T Consensus 67 ~~~~~~~~~~d~vih~A~~ 85 (349)
T TIGR02622 67 LRKAIAEFKPEIVFHLAAQ 85 (349)
T ss_pred HHHHHhhcCCCEEEECCcc
Confidence 7888888899999977764
No 497
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=36.00 E-value=28 Score=31.58 Aligned_cols=34 Identities=24% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 322 ~~~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++++|+|+|+|..|+-+|..|... | +++.++=++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~-----g-------~~V~~~~R~ 199 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKA-----G-------KSVTLVTRS 199 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTT-----C-------SEEEEEESS
T ss_pred CCCcEEEEcChHHHHHHHHHHHhh-----C-------CEEEEEecC
Confidence 339999999999998887666543 3 467766553
No 498
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=35.83 E-value=33 Score=38.92 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 013638 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (439)
Q Consensus 324 ~riv~~GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~ 367 (439)
++|.|+|||..|.|||.++.. ..|+ +++++|.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~----~~G~-------~V~l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTAT----KAGI-------PVRIKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHH----HcCC-------eEEEEeCC
Confidence 479999999999999987753 1354 57777754
No 499
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=35.63 E-value=79 Score=31.26 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=29.5
Q ss_pred CCCHHHHhccCCCcEEEeccCCCCCCCHHHHHHHhc-----cCCCCC
Q 013638 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVKTYFLC-----FIPCFI 438 (439)
Q Consensus 397 ~~sL~eaV~~vkPtvLIG~S~~~G~FteevV~~Ma~-----~~~~pi 438 (439)
..|++|.++.-++|+++ +.+ |..+..|++..-.+ .|+|||
T Consensus 56 ~~~~~~ll~~~~iD~V~-Iat-p~~~H~e~~~~AL~aGkhVl~EKPl 100 (342)
T COG0673 56 YTDLEELLADPDIDAVY-IAT-PNALHAELALAALEAGKHVLCEKPL 100 (342)
T ss_pred cCCHHHHhcCCCCCEEE-EcC-CChhhHHHHHHHHhcCCEEEEcCCC
Confidence 57899999997778887 444 67777777755444 488887
No 500
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=35.57 E-value=3.5e+02 Score=24.75 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhCCceEEEEecCCCc--hHHHHHHHHhhcccccccCcchhHHHHHHHHHHHHHHhCCCccCCCCceEEEe
Q 013638 252 VDEFMEAVHARWPKAIVQFEDFQMK--WAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVV 329 (439)
Q Consensus 252 vdefv~av~~~~P~~~IqfEDf~~~--naf~iL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~dl~~~riv~~ 329 (439)
...|++++.+..|.-.|-+-|.+.. .+.+.+. ++...-.+..-..||=...+++.++|--.. ... ..|+|.
T Consensus 4 ~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~---~~~---~vv~i~ 76 (178)
T cd02014 4 PERVAAELNKRAPDDAIFTIDVGNVTVWAARHLR-MNGKQRFILSGLLATMGNGLPGAIAAKLAY---PDR---QVIALS 76 (178)
T ss_pred HHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcc-cCCCCcEEcCCCCchhhhHHHHHHHHHHhC---CCC---cEEEEE
Confidence 3568888888888655556676643 2333443 222233444556787555665555543222 123 688999
Q ss_pred CchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecccc
Q 013638 330 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (439)
Q Consensus 330 GAGsAgiGiA~li~~~~~~~~Gls~eeA~~~i~lvDs~GL 369 (439)
|=|+..++..++... + +.+++. .++++|-.|.
T Consensus 77 GDG~f~~~~~el~t~--~-~~~lp~-----~~iv~NN~~~ 108 (178)
T cd02014 77 GDGGFAMLMGDLITA--V-KYNLPV-----IVVVFNNSDL 108 (178)
T ss_pred cchHHHhhHHHHHHH--H-HhCCCc-----EEEEEECCch
Confidence 999999998886542 3 456653 5666776543
Done!