BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013640
         (439 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
           Synthetase
 pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
           Synthetase
          Length = 295

 Score = 28.5 bits (62), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 25/145 (17%)

Query: 216 HWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIK 275
           H  +F+    D+G  + +DL N +++L+   T   +L       +++NK R+    D++ 
Sbjct: 77  HGEVFVL---DDGGEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERK---GDYLG 130

Query: 276 VIQQEQNSYKDPITEFLA-CVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVP 334
              Q      D I E++     +  D DG + ++   E        LG  V D    ++P
Sbjct: 131 KTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIE--------LGGTVGD--IESMP 180

Query: 335 LRDEFLENARLFIF----ETYCRIH 355
               F+E  R F F    E +C IH
Sbjct: 181 ----FIEAFRQFQFKVKRENFCNIH 201


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,925,314
Number of Sequences: 62578
Number of extensions: 537848
Number of successful extensions: 1122
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 7
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)