Query 013640
Match_columns 439
No_of_seqs 155 out of 294
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 2.4E-50 8.3E-55 417.9 20.9 387 16-430 22-422 (429)
2 3txn_A 26S proteasome regulato 100.0 7.1E-29 2.4E-33 255.2 21.1 270 132-425 103-386 (394)
3 4b4t_Q 26S proteasome regulato 99.9 7.4E-21 2.5E-25 188.9 20.3 281 122-422 129-423 (434)
4 4b4t_P 26S proteasome regulato 99.7 2.5E-16 8.6E-21 163.9 23.9 291 129-431 138-435 (445)
5 4b4t_O 26S proteasome regulato 99.6 1.4E-14 4.8E-19 148.6 19.3 277 137-434 85-389 (393)
6 3t5x_A PCI domain-containing p 99.4 1.2E-11 4E-16 116.4 15.1 158 218-405 21-195 (203)
7 1ufm_A COP9 complex subunit 4; 99.3 1.3E-12 4.4E-17 106.8 6.1 68 334-405 11-78 (84)
8 3t5v_B Nuclear mRNA export pro 98.9 3.4E-08 1.2E-12 103.3 18.9 206 132-403 180-429 (455)
9 4b4t_S RPN3, 26S proteasome re 98.7 1.9E-07 6.4E-12 98.8 14.3 221 149-401 213-446 (523)
10 3chm_A COP9 signalosome comple 98.0 9.9E-05 3.4E-09 67.4 13.2 127 254-403 27-157 (169)
11 4b0z_A RPN12, 26S proteasome r 97.0 0.043 1.5E-06 51.9 18.2 47 334-380 167-214 (229)
12 1wi9_A Protein C20ORF116 homol 95.8 0.022 7.4E-07 44.8 6.7 54 347-400 11-64 (72)
13 3vtx_A MAMA; tetratricopeptide 95.4 1.1 3.6E-05 38.1 16.9 66 128-196 5-70 (184)
14 3edt_B KLC 2, kinesin light ch 95.2 1.6 5.4E-05 38.6 17.8 81 117-197 31-117 (283)
15 3qky_A Outer membrane assembly 94.6 1.3 4.6E-05 40.0 16.1 74 124-197 11-84 (261)
16 2ho1_A Type 4 fimbrial biogene 94.5 1.9 6.3E-05 38.2 16.5 76 115-193 58-133 (252)
17 4gco_A Protein STI-1; structur 94.5 0.26 8.9E-06 40.7 9.9 69 123-194 8-76 (126)
18 2q7f_A YRRB protein; TPR, prot 94.3 2.4 8.3E-05 36.9 17.5 181 116-319 45-227 (243)
19 3nf1_A KLC 1, kinesin light ch 94.2 2.4 8.2E-05 38.2 16.9 74 124-197 23-101 (311)
20 3uq3_A Heat shock protein STI1 93.7 3.3 0.00011 36.2 17.5 68 126-197 3-70 (258)
21 2xev_A YBGF; tetratricopeptide 93.7 0.79 2.7E-05 36.2 11.0 70 127-196 38-107 (129)
22 3k9i_A BH0479 protein; putativ 93.5 0.62 2.1E-05 37.2 10.1 79 115-196 11-92 (117)
23 1pc2_A Mitochondria fission pr 93.3 0.53 1.8E-05 41.9 10.1 89 66-160 9-103 (152)
24 4ga2_A E3 SUMO-protein ligase 93.2 0.47 1.6E-05 40.1 9.4 77 115-194 18-94 (150)
25 2kat_A Uncharacterized protein 93.1 0.63 2.1E-05 36.7 9.5 79 116-197 7-85 (115)
26 2vgx_A Chaperone SYCD; alterna 92.9 0.85 2.9E-05 38.5 10.7 75 117-194 10-84 (148)
27 2xpi_A Anaphase-promoting comp 92.9 6.6 0.00023 39.5 19.1 69 123-194 368-436 (597)
28 1xn7_A Hypothetical protein YH 92.9 0.15 5.2E-06 40.4 5.4 43 346-388 5-47 (78)
29 1elr_A TPR2A-domain of HOP; HO 92.9 0.35 1.2E-05 37.7 7.6 71 124-194 34-108 (131)
30 2xev_A YBGF; tetratricopeptide 92.9 0.35 1.2E-05 38.4 7.7 68 129-196 3-70 (129)
31 3nf1_A KLC 1, kinesin light ch 92.8 5.2 0.00018 35.9 17.0 74 124-197 65-143 (311)
32 2ho1_A Type 4 fimbrial biogene 92.7 1.9 6.3E-05 38.2 13.1 79 116-197 163-241 (252)
33 3ieg_A DNAJ homolog subfamily 92.7 3.2 0.00011 38.1 15.1 68 123-193 32-99 (359)
34 3hym_B Cell division cycle pro 92.6 5.9 0.0002 35.9 19.2 79 113-194 110-188 (330)
35 1a17_A Serine/threonine protei 92.5 1.1 3.9E-05 36.6 10.7 80 117-197 70-149 (166)
36 3ma5_A Tetratricopeptide repea 92.4 0.55 1.9E-05 36.8 8.2 70 125-197 4-73 (100)
37 2kck_A TPR repeat; tetratricop 92.4 0.34 1.2E-05 36.8 6.8 68 125-193 37-105 (112)
38 2fo7_A Synthetic consensus TPR 92.4 2.4 8E-05 32.6 11.9 66 125-193 66-131 (136)
39 3q49_B STIP1 homology and U bo 92.3 0.36 1.2E-05 38.7 7.2 72 123-197 38-109 (137)
40 3as5_A MAMA; tetratricopeptide 92.2 2.4 8.3E-05 34.7 12.5 79 116-197 98-176 (186)
41 3cv0_A Peroxisome targeting si 92.2 3.6 0.00012 37.4 14.6 70 124-196 51-120 (327)
42 2xcb_A PCRH, regulatory protei 92.1 0.91 3.1E-05 37.5 9.6 76 116-194 6-81 (142)
43 2y4t_A DNAJ homolog subfamily 92.1 5.8 0.0002 38.2 16.8 67 124-193 56-122 (450)
44 2dba_A Smooth muscle cell asso 91.9 1.4 4.7E-05 35.3 10.3 65 128-195 65-129 (148)
45 3gyz_A Chaperone protein IPGC; 91.9 0.84 2.9E-05 39.4 9.5 76 117-196 25-101 (151)
46 3upv_A Heat shock protein STI1 91.9 0.74 2.5E-05 36.7 8.5 75 118-195 28-102 (126)
47 1nzn_A CGI-135 protein, fissio 91.8 2 6.7E-05 37.1 11.5 49 113-161 57-107 (126)
48 2lni_A Stress-induced-phosphop 91.8 1.1 3.9E-05 35.0 9.5 77 115-194 37-113 (133)
49 2dba_A Smooth muscle cell asso 91.8 0.58 2E-05 37.6 7.9 71 124-194 24-94 (148)
50 2yhc_A BAMD, UPF0169 lipoprote 91.7 0.78 2.7E-05 41.1 9.3 69 129-197 5-73 (225)
51 4gco_A Protein STI-1; structur 91.7 0.99 3.4E-05 37.1 9.3 76 116-194 35-110 (126)
52 3upv_A Heat shock protein STI1 91.7 1 3.4E-05 35.9 9.1 66 126-194 2-67 (126)
53 2vyi_A SGTA protein; chaperone 91.6 0.88 3E-05 35.2 8.5 68 124-194 42-109 (131)
54 2vq2_A PILW, putative fimbrial 91.6 5.8 0.0002 33.7 18.1 68 124-194 4-71 (225)
55 2k02_A Ferrous iron transport 91.5 0.21 7.3E-06 40.5 4.7 42 347-388 6-47 (87)
56 4gcn_A Protein STI-1; structur 91.3 1.3 4.4E-05 36.3 9.6 69 126-197 6-74 (127)
57 1elw_A TPR1-domain of HOP; HOP 91.3 1.3 4.5E-05 33.5 9.1 65 127-194 3-67 (118)
58 3cv0_A Peroxisome targeting si 91.3 8.2 0.00028 34.9 16.7 173 123-317 84-272 (327)
59 2lni_A Stress-induced-phosphop 91.2 0.97 3.3E-05 35.4 8.4 68 124-194 12-79 (133)
60 1na3_A Designed protein CTPR2; 91.1 1.7 5.9E-05 31.9 9.3 66 126-194 7-72 (91)
61 3uq3_A Heat shock protein STI1 91.0 4.2 0.00014 35.4 13.3 77 115-194 126-202 (258)
62 1fch_A Peroxisomal targeting s 90.9 10 0.00034 35.2 17.4 182 116-318 120-318 (368)
63 2l6j_A TPR repeat-containing p 90.8 1.3 4.6E-05 33.7 8.7 65 127-194 3-67 (111)
64 3qky_A Outer membrane assembly 90.7 0.79 2.7E-05 41.6 8.4 72 126-197 50-129 (261)
65 3vtx_A MAMA; tetratricopeptide 90.7 3.1 0.0001 35.1 11.8 76 115-193 94-169 (184)
66 3sz7_A HSC70 cochaperone (SGT) 90.7 0.97 3.3E-05 38.0 8.5 77 118-197 35-111 (164)
67 4eqf_A PEX5-related protein; a 90.6 6.7 0.00023 36.8 15.2 75 118-195 89-163 (365)
68 2pl2_A Hypothetical conserved 90.5 7.5 0.00026 34.4 14.7 77 115-194 26-113 (217)
69 1qgp_A Protein (double strande 90.5 1.4 4.7E-05 34.5 8.4 61 342-404 14-77 (77)
70 1elw_A TPR1-domain of HOP; HOP 90.5 0.98 3.3E-05 34.3 7.6 67 124-193 34-100 (118)
71 1na0_A Designed protein CTPR3; 90.3 1.4 4.9E-05 33.6 8.5 67 125-194 40-106 (125)
72 1elr_A TPR2A-domain of HOP; HO 90.3 1.9 6.5E-05 33.3 9.3 69 126-197 2-70 (131)
73 2vq2_A PILW, putative fimbrial 90.2 7.7 0.00026 32.9 17.1 67 124-193 38-105 (225)
74 2vyi_A SGTA protein; chaperone 90.1 2.2 7.7E-05 32.8 9.6 68 124-194 8-75 (131)
75 1qbj_A Protein (double-strande 90.0 1.4 5E-05 34.9 8.3 61 342-404 10-73 (81)
76 3u4t_A TPR repeat-containing p 90.0 5.9 0.0002 35.2 13.6 71 124-194 33-103 (272)
77 1hh8_A P67PHOX, NCF-2, neutrop 90.0 0.92 3.2E-05 39.3 7.9 78 118-195 61-151 (213)
78 3ro3_A PINS homolog, G-protein 89.9 2.2 7.5E-05 33.9 9.6 77 121-197 82-161 (164)
79 3hym_B Cell division cycle pro 89.7 11 0.00037 34.1 15.3 63 129-194 23-85 (330)
80 3q49_B STIP1 homology and U bo 89.5 1.5 5E-05 35.0 8.2 66 126-194 7-72 (137)
81 3rkv_A Putative peptidylprolyl 89.3 1.5 5E-05 36.8 8.4 70 125-194 8-92 (162)
82 3sz7_A HSC70 cochaperone (SGT) 89.2 2.2 7.4E-05 35.8 9.5 68 124-194 7-74 (164)
83 2q7f_A YRRB protein; TPR, prot 88.9 3.2 0.00011 36.1 10.7 79 115-196 146-224 (243)
84 1a17_A Serine/threonine protei 88.8 2.8 9.4E-05 34.2 9.6 66 126-194 11-76 (166)
85 3as5_A MAMA; tetratricopeptide 88.5 8.9 0.0003 31.2 16.0 65 127-194 7-71 (186)
86 2fo7_A Synthetic consensus TPR 88.4 2.3 7.8E-05 32.6 8.4 67 125-194 32-98 (136)
87 2heo_A Z-DNA binding protein 1 88.3 1.1 3.6E-05 34.0 6.1 50 340-389 8-57 (67)
88 2xcb_A PCRH, regulatory protei 88.2 1.9 6.6E-05 35.4 8.3 72 123-197 47-118 (142)
89 4gcn_A Protein STI-1; structur 88.2 1.4 4.9E-05 36.0 7.4 77 116-192 30-110 (127)
90 2pl2_A Hypothetical conserved 88.0 9.1 0.00031 33.8 13.3 76 115-194 105-180 (217)
91 3gw4_A Uncharacterized protein 87.9 2.9 9.8E-05 35.4 9.5 79 119-197 57-139 (203)
92 3mkr_A Coatomer subunit epsilo 87.6 18 0.00063 33.8 17.5 172 123-321 96-271 (291)
93 4a1s_A PINS, partner of inscut 87.4 20 0.00067 34.0 17.4 74 124-197 44-118 (411)
94 2vgx_A Chaperone SYCD; alterna 87.3 2.3 7.9E-05 35.8 8.4 73 122-197 49-121 (148)
95 2kck_A TPR repeat; tetratricop 87.3 1 3.5E-05 33.9 5.6 65 127-194 5-69 (112)
96 3sf4_A G-protein-signaling mod 87.2 15 0.0005 34.4 14.8 72 126-197 7-79 (406)
97 4gyw_A UDP-N-acetylglucosamine 87.1 19 0.00066 39.1 17.6 168 124-315 5-175 (723)
98 3ieg_A DNAJ homolog subfamily 86.9 18 0.00061 32.9 20.6 72 123-194 66-149 (359)
99 4i17_A Hypothetical protein; T 86.8 3 0.0001 36.6 9.2 78 115-192 63-144 (228)
100 3ro3_A PINS homolog, G-protein 86.8 2.9 0.0001 33.2 8.4 73 125-197 6-81 (164)
101 2gw1_A Mitochondrial precursor 86.5 25 0.00084 34.1 20.4 38 122-159 67-104 (514)
102 3urz_A Uncharacterized protein 86.5 3.5 0.00012 36.3 9.5 58 134-194 60-117 (208)
103 1hxi_A PEX5, peroxisome target 86.4 1.6 5.4E-05 35.5 6.6 73 117-192 40-112 (121)
104 2yhc_A BAMD, UPF0169 lipoprote 86.3 17 0.00058 32.1 15.8 65 130-194 149-213 (225)
105 3rkv_A Putative peptidylprolyl 86.3 3.7 0.00013 34.3 9.1 69 124-195 59-127 (162)
106 1rz4_A Eukaryotic translation 86.2 0.54 1.8E-05 44.5 4.0 59 335-400 130-189 (226)
107 1fch_A Peroxisomal targeting s 86.1 21 0.00072 33.0 17.8 79 115-196 85-163 (368)
108 1xnf_A Lipoprotein NLPI; TPR, 86.0 2.2 7.7E-05 37.9 8.0 76 117-195 66-141 (275)
109 2gw1_A Mitochondrial precursor 85.9 18 0.00063 35.0 15.3 32 287-318 451-482 (514)
110 3ro2_A PINS homolog, G-protein 85.9 17 0.00058 32.4 14.0 77 121-197 76-175 (338)
111 3edt_B KLC 2, kinesin light ch 85.8 4.3 0.00015 35.7 9.7 74 124-197 81-159 (283)
112 4gyw_A UDP-N-acetylglucosamine 85.7 3.3 0.00011 45.2 10.6 81 114-197 97-177 (723)
113 3o48_A Mitochondria fission 1 85.7 0.97 3.3E-05 39.5 5.1 48 114-161 63-111 (134)
114 3gyz_A Chaperone protein IPGC; 85.5 3.2 0.00011 35.7 8.4 78 116-196 58-135 (151)
115 1xnf_A Lipoprotein NLPI; TPR, 84.9 7.3 0.00025 34.4 10.9 78 115-196 98-175 (275)
116 2fbn_A 70 kDa peptidylprolyl i 84.8 5.3 0.00018 34.4 9.7 70 125-194 35-117 (198)
117 2y4t_A DNAJ homolog subfamily 84.6 29 0.00098 33.2 21.4 78 117-194 83-172 (450)
118 2xpi_A Anaphase-promoting comp 84.6 35 0.0012 34.1 19.7 254 35-314 305-579 (597)
119 2e2e_A Formate-dependent nitri 83.8 2.8 9.5E-05 35.3 7.2 75 116-194 32-110 (177)
120 3ulq_A Response regulator aspa 83.8 30 0.001 32.8 16.7 74 124-197 180-256 (383)
121 2jt1_A PEFI protein; solution 83.7 1.8 6.1E-05 34.1 5.4 45 344-388 5-55 (77)
122 2vsy_A XCC0866; transferase, g 83.5 8.5 0.00029 39.4 12.1 77 115-194 78-157 (568)
123 1na0_A Designed protein CTPR3; 83.4 7.8 0.00027 29.2 9.2 64 128-194 9-72 (125)
124 3u3w_A Transcriptional activat 83.3 4.5 0.00015 37.5 9.1 76 122-197 190-269 (293)
125 4eqf_A PEX5-related protein; a 83.3 5.1 0.00018 37.6 9.6 80 115-197 234-313 (365)
126 2v5f_A Prolyl 4-hydroxylase su 83.2 6.2 0.00021 31.2 8.7 65 130-194 7-75 (104)
127 2vsy_A XCC0866; transferase, g 82.8 11 0.00036 38.6 12.4 46 115-160 112-160 (568)
128 3ro2_A PINS homolog, G-protein 82.7 4.6 0.00016 36.3 8.6 77 121-197 216-295 (338)
129 1y8m_A FIS1; mitochondria, unk 82.5 3.4 0.00012 36.5 7.2 48 114-161 62-110 (144)
130 2kc7_A BFR218_protein; tetratr 82.2 7 0.00024 29.3 8.3 62 131-194 3-64 (99)
131 3ulq_A Response regulator aspa 82.1 35 0.0012 32.3 20.1 65 134-198 109-176 (383)
132 3fp2_A TPR repeat-containing p 81.9 40 0.0014 32.9 17.5 62 124-188 55-116 (537)
133 4i17_A Hypothetical protein; T 81.8 5.5 0.00019 34.9 8.6 63 129-193 8-70 (228)
134 1sfx_A Conserved hypothetical 81.1 6.9 0.00024 30.5 8.2 72 344-416 22-95 (109)
135 2ooe_A Cleavage stimulation fa 80.8 37 0.0012 34.1 15.5 74 124-197 421-495 (530)
136 3q15_A PSP28, response regulat 80.4 41 0.0014 32.0 15.6 69 130-198 103-174 (378)
137 3gw4_A Uncharacterized protein 79.8 9 0.00031 32.2 9.0 74 124-197 22-98 (203)
138 2oqg_A Possible transcriptiona 79.6 8.5 0.00029 30.8 8.4 49 342-392 21-69 (114)
139 4a1s_A PINS, partner of inscut 79.5 42 0.0014 31.6 16.3 76 122-197 120-215 (411)
140 3q15_A PSP28, response regulat 79.5 10 0.00034 36.3 10.3 76 122-197 216-293 (378)
141 3u4t_A TPR repeat-containing p 79.1 33 0.0011 30.1 19.3 61 128-191 74-134 (272)
142 4abn_A Tetratricopeptide repea 78.9 15 0.0005 37.1 11.7 81 114-194 199-287 (474)
143 2htj_A P fimbrial regulatory p 78.6 4.9 0.00017 30.9 6.3 43 345-388 3-45 (81)
144 4ga2_A E3 SUMO-protein ligase 78.6 4.5 0.00016 33.8 6.7 77 114-194 51-129 (150)
145 2qfc_A PLCR protein; TPR, HTH, 78.1 18 0.00061 33.3 11.3 72 126-197 153-228 (293)
146 2fbn_A 70 kDa peptidylprolyl i 77.9 10 0.00035 32.6 8.9 65 128-195 88-152 (198)
147 2e2e_A Formate-dependent nitri 77.9 5.6 0.00019 33.4 7.1 68 126-196 76-146 (177)
148 1qqe_A Vesicular transport pro 77.6 28 0.00096 32.1 12.5 79 119-197 68-150 (292)
149 1ub9_A Hypothetical protein PH 76.4 7 0.00024 30.3 6.8 52 339-391 13-64 (100)
150 2ond_A Cleavage stimulation fa 75.9 49 0.0017 30.5 15.5 74 124-197 199-273 (308)
151 1p5q_A FKBP52, FK506-binding p 75.9 11 0.00039 36.0 9.5 71 124-194 143-225 (336)
152 1hh8_A P67PHOX, NCF-2, neutrop 75.6 13 0.00046 31.6 9.0 67 128-197 37-103 (213)
153 3tqn_A Transcriptional regulat 75.4 6.3 0.00021 32.5 6.5 68 334-403 9-77 (113)
154 1ihg_A Cyclophilin 40; ppiase 75.1 9.7 0.00033 37.4 8.9 71 123-196 268-338 (370)
155 2ifu_A Gamma-SNAP; membrane fu 74.6 11 0.00038 35.2 8.8 67 126-192 153-222 (307)
156 3sf4_A G-protein-signaling mod 74.2 55 0.0019 30.3 15.1 78 120-197 79-179 (406)
157 1p5q_A FKBP52, FK506-binding p 73.6 9.7 0.00033 36.6 8.3 66 127-195 195-260 (336)
158 4ham_A LMO2241 protein; struct 73.4 8.6 0.00029 32.5 7.0 70 333-404 13-83 (134)
159 4abn_A Tetratricopeptide repea 73.2 79 0.0027 31.6 24.7 76 115-193 89-165 (474)
160 2c2l_A CHIP, carboxy terminus 73.1 13 0.00046 34.4 9.0 45 116-160 60-104 (281)
161 1kt0_A FKBP51, 51 kDa FK506-bi 72.9 14 0.00049 37.1 9.7 72 124-195 264-347 (457)
162 2d1h_A ST1889, 109AA long hypo 72.6 18 0.00062 28.0 8.4 51 343-393 22-72 (109)
163 3urz_A Uncharacterized protein 72.4 18 0.0006 31.7 9.2 45 116-160 76-120 (208)
164 2kc7_A BFR218_protein; tetratr 72.4 11 0.00039 28.1 6.9 38 124-161 30-68 (99)
165 1na3_A Designed protein CTPR2; 72.4 4.7 0.00016 29.3 4.6 37 124-160 39-75 (91)
166 1w3b_A UDP-N-acetylglucosamine 71.8 66 0.0023 30.1 18.9 75 116-194 123-198 (388)
167 1hxi_A PEX5, peroxisome target 71.7 20 0.00069 28.6 8.7 63 129-194 18-80 (121)
168 1xmk_A Double-stranded RNA-spe 71.6 6 0.00021 31.2 5.1 47 341-388 10-57 (79)
169 3r0a_A Putative transcriptiona 71.2 20 0.00068 29.8 8.7 83 342-424 26-113 (123)
170 3cuo_A Uncharacterized HTH-typ 70.9 12 0.00042 28.9 6.9 51 341-392 23-73 (99)
171 2c2l_A CHIP, carboxy terminus 70.7 9.5 0.00033 35.5 7.3 71 124-197 34-104 (281)
172 2r5s_A Uncharacterized protein 70.5 8.5 0.00029 32.6 6.4 75 114-189 94-168 (176)
173 3bee_A Putative YFRE protein; 70.1 5.6 0.00019 31.5 4.8 46 115-160 30-75 (93)
174 3fp2_A TPR repeat-containing p 70.0 84 0.0029 30.6 19.1 167 128-320 243-413 (537)
175 2kat_A Uncharacterized protein 69.6 8.7 0.0003 29.8 5.8 39 122-160 47-85 (115)
176 1v4r_A Transcriptional repress 69.3 2.9 0.0001 33.6 2.9 77 334-412 11-88 (102)
177 1ihg_A Cyclophilin 40; ppiase 69.2 14 0.00048 36.3 8.5 68 126-193 221-301 (370)
178 3by6_A Predicted transcription 69.2 9.4 0.00032 32.1 6.3 66 334-401 11-77 (126)
179 3lwf_A LIN1550 protein, putati 68.9 18 0.00061 31.9 8.3 68 336-404 23-90 (159)
180 3ma5_A Tetratricopeptide repea 68.6 2.7 9.2E-05 32.7 2.5 44 117-160 30-73 (100)
181 1wao_1 Serine/threonine protei 67.8 13 0.00043 37.9 8.0 33 125-157 37-69 (477)
182 3k9i_A BH0479 protein; putativ 67.7 4.5 0.00015 31.9 3.7 46 116-161 49-94 (117)
183 3mkr_A Coatomer subunit epsilo 67.7 78 0.0027 29.3 13.3 54 137-193 175-228 (291)
184 3t8r_A Staphylococcus aureus C 67.7 14 0.00047 31.8 7.1 67 338-405 9-75 (143)
185 2ao9_A Phage protein; structur 67.1 7.4 0.00025 34.7 5.3 46 334-379 23-70 (155)
186 2qvo_A Uncharacterized protein 67.1 8.5 0.00029 30.3 5.3 63 339-401 9-74 (95)
187 1hz4_A MALT regulatory protein 67.1 41 0.0014 31.5 11.1 73 125-197 132-206 (373)
188 1kt0_A FKBP51, 51 kDa FK506-bi 67.1 19 0.00064 36.3 9.1 65 127-194 316-380 (457)
189 3t5v_A Nuclear mRNA export pro 66.5 5 0.00017 39.6 4.5 45 335-379 198-247 (316)
190 2b0l_A GTP-sensing transcripti 66.5 15 0.00053 29.8 6.8 58 343-401 29-87 (102)
191 3neu_A LIN1836 protein; struct 65.8 15 0.0005 30.8 6.8 67 333-401 12-79 (125)
192 2l6j_A TPR repeat-containing p 65.7 11 0.00038 28.3 5.6 39 123-161 33-71 (111)
193 1ylf_A RRF2 family protein; st 64.4 20 0.00068 30.8 7.5 64 338-404 12-75 (149)
194 3jth_A Transcription activator 64.4 18 0.00063 28.2 6.8 51 340-392 21-71 (98)
195 2pzi_A Probable serine/threoni 64.2 19 0.00065 38.3 8.9 71 122-195 427-497 (681)
196 1w3b_A UDP-N-acetylglucosamine 63.7 96 0.0033 29.0 21.5 76 115-194 88-164 (388)
197 3qou_A Protein YBBN; thioredox 63.6 52 0.0018 30.3 10.9 120 39-161 121-252 (287)
198 1oyi_A Double-stranded RNA-bin 63.1 10 0.00034 30.3 4.8 46 342-389 17-62 (82)
199 2y75_A HTH-type transcriptiona 62.8 37 0.0013 28.0 8.7 65 339-404 8-72 (129)
200 2ek5_A Predicted transcription 62.3 16 0.00056 30.8 6.4 67 334-402 4-71 (129)
201 2kko_A Possible transcriptiona 62.3 13 0.00045 30.0 5.7 49 342-392 25-73 (108)
202 2ifu_A Gamma-SNAP; membrane fu 61.9 30 0.001 32.2 8.9 76 121-197 109-187 (307)
203 1sfu_A 34L protein; protein/Z- 60.8 14 0.00049 28.9 5.2 38 351-388 23-60 (75)
204 2if4_A ATFKBP42; FKBP-like, al 60.2 20 0.00068 34.4 7.5 70 125-194 176-259 (338)
205 3qou_A Protein YBBN; thioredox 60.0 16 0.00055 33.9 6.6 64 125-191 114-177 (287)
206 2hr2_A Hypothetical protein; a 59.9 84 0.0029 27.6 10.9 72 126-197 9-89 (159)
207 2p5k_A Arginine repressor; DNA 59.7 30 0.001 24.6 6.7 51 342-397 4-59 (64)
208 1qqe_A Vesicular transport pro 59.4 38 0.0013 31.2 9.1 77 120-196 109-189 (292)
209 4b4t_T 26S proteasome regulato 58.8 13 0.00044 35.8 5.7 48 335-385 177-224 (274)
210 2hr3_A Probable transcriptiona 58.6 30 0.001 28.4 7.5 54 343-396 36-89 (147)
211 2cg4_A Regulatory protein ASNC 58.1 18 0.00063 30.7 6.1 44 351-394 16-62 (152)
212 2qfc_A PLCR protein; TPR, HTH, 57.3 1.1E+02 0.0039 27.7 17.6 72 126-197 73-147 (293)
213 1wao_1 Serine/threonine protei 56.8 15 0.00052 37.3 6.2 74 115-189 61-134 (477)
214 1r1u_A CZRA, repressor protein 56.7 31 0.0011 27.5 6.9 50 341-392 25-74 (106)
215 2if4_A ATFKBP42; FKBP-like, al 56.3 29 0.00098 33.2 7.9 63 129-194 231-293 (338)
216 1tc3_C Protein (TC3 transposas 56.3 14 0.00048 24.2 4.1 26 356-381 20-45 (51)
217 2qlz_A Transcription factor PF 56.3 45 0.0015 31.2 8.9 44 354-400 175-218 (232)
218 1y0u_A Arsenical resistance op 56.2 22 0.00075 27.8 5.9 58 339-403 28-85 (96)
219 2hr2_A Hypothetical protein; a 56.1 82 0.0028 27.7 10.2 78 129-206 58-143 (159)
220 2pjp_A Selenocysteine-specific 55.5 11 0.00038 31.3 4.1 45 343-389 8-52 (121)
221 2v79_A DNA replication protein 55.3 18 0.00062 31.0 5.6 56 339-394 29-90 (135)
222 4a0z_A Transcription factor FA 55.1 17 0.0006 32.9 5.7 42 340-381 9-50 (190)
223 2fbh_A Transcriptional regulat 55.0 45 0.0015 27.1 7.9 42 353-394 48-89 (146)
224 1tbx_A ORF F-93, hypothetical 54.9 27 0.00093 27.2 6.2 39 355-393 20-62 (99)
225 2pn6_A ST1022, 150AA long hypo 54.7 23 0.00078 29.9 6.1 51 343-394 4-57 (150)
226 2r5s_A Uncharacterized protein 53.6 7.4 0.00025 33.0 2.8 61 128-191 6-66 (176)
227 1q1h_A TFE, transcription fact 53.4 18 0.00061 29.0 5.0 59 342-400 18-78 (110)
228 3f6o_A Probable transcriptiona 53.1 20 0.00067 29.4 5.3 54 337-392 13-66 (118)
229 3mv2_B Coatomer subunit epsilo 53.1 43 0.0015 32.7 8.6 67 129-196 101-167 (310)
230 1u2w_A CADC repressor, cadmium 52.8 50 0.0017 27.1 7.8 54 336-390 36-89 (122)
231 3c7j_A Transcriptional regulat 52.6 23 0.0008 32.7 6.3 66 334-401 26-91 (237)
232 3n71_A Histone lysine methyltr 52.3 2.1E+02 0.0072 29.3 14.5 88 118-205 340-433 (490)
233 2vn2_A DNAD, chromosome replic 51.3 17 0.00058 30.5 4.7 36 357-392 51-86 (128)
234 3qwp_A SET and MYND domain-con 51.2 57 0.002 32.8 9.4 82 124-205 325-411 (429)
235 2rdp_A Putative transcriptiona 51.0 42 0.0015 27.5 7.2 43 355-397 54-96 (150)
236 1zu2_A Mitochondrial import re 51.0 19 0.00066 31.8 5.1 47 115-161 67-124 (158)
237 2gxg_A 146AA long hypothetical 50.8 37 0.0013 27.7 6.7 42 355-396 48-89 (146)
238 2nnn_A Probable transcriptiona 50.2 43 0.0015 27.0 7.0 44 354-397 49-92 (140)
239 3pqk_A Biofilm growth-associat 49.0 72 0.0025 24.9 7.9 62 339-402 20-81 (102)
240 2v5f_A Prolyl 4-hydroxylase su 48.8 39 0.0013 26.4 6.2 38 124-161 42-79 (104)
241 2l0k_A Stage III sporulation p 48.4 21 0.00071 28.9 4.5 36 343-379 7-42 (93)
242 1xd7_A YWNA; structural genomi 48.4 39 0.0013 28.8 6.6 59 341-404 10-68 (145)
243 3qww_A SET and MYND domain-con 48.2 2.3E+02 0.0078 28.5 15.8 88 119-206 330-423 (433)
244 2wv0_A YVOA, HTH-type transcri 47.6 49 0.0017 30.6 7.7 69 334-404 10-79 (243)
245 1jgs_A Multiple antibiotic res 47.5 53 0.0018 26.5 7.2 44 354-397 45-88 (138)
246 3i4p_A Transcriptional regulat 47.4 23 0.00079 30.7 5.1 44 351-394 11-57 (162)
247 3bdd_A Regulatory protein MARR 47.1 46 0.0016 26.9 6.7 43 354-396 42-84 (142)
248 2ond_A Cleavage stimulation fa 47.1 68 0.0023 29.6 8.6 76 115-193 85-162 (308)
249 1on2_A Transcriptional regulat 46.5 42 0.0014 27.7 6.4 55 353-410 18-72 (142)
250 3hsr_A HTH-type transcriptiona 46.1 48 0.0016 27.2 6.7 43 354-396 47-89 (140)
251 2da7_A Zinc finger homeobox pr 46.0 14 0.00048 28.7 2.9 35 347-381 19-56 (71)
252 2a61_A Transcriptional regulat 45.8 93 0.0032 25.1 8.5 44 355-398 45-88 (145)
253 3k69_A Putative transcription 45.5 36 0.0012 29.9 6.0 66 337-404 9-74 (162)
254 3bpv_A Transcriptional regulat 45.1 48 0.0016 26.7 6.5 44 355-398 41-84 (138)
255 2dbb_A Putative HTH-type trans 44.6 22 0.00074 30.1 4.3 48 346-394 13-63 (151)
256 4g1t_A Interferon-induced prot 44.4 27 0.00093 33.8 5.5 78 114-191 320-398 (472)
257 3eet_A Putative GNTR-family tr 43.9 53 0.0018 31.1 7.4 70 333-404 28-98 (272)
258 3oop_A LIN2960 protein; protei 43.8 40 0.0014 27.6 5.9 43 354-396 48-90 (143)
259 2cyy_A Putative HTH-type trans 43.7 36 0.0012 28.9 5.6 49 345-394 10-61 (151)
260 3bee_A Putative YFRE protein; 43.7 86 0.0029 24.3 7.5 66 126-194 4-72 (93)
261 3ihu_A Transcriptional regulat 43.5 57 0.002 29.4 7.3 67 334-402 16-82 (222)
262 1i1g_A Transcriptional regulat 43.4 35 0.0012 28.3 5.4 43 345-388 7-49 (141)
263 3edp_A LIN2111 protein; APC883 43.2 44 0.0015 30.9 6.5 70 333-404 8-78 (236)
264 1hz4_A MALT regulatory protein 43.0 1.1E+02 0.0039 28.3 9.6 78 120-197 85-167 (373)
265 2lkp_A Transcriptional regulat 42.6 33 0.0011 27.7 5.0 48 340-389 30-77 (119)
266 2frh_A SARA, staphylococcal ac 42.6 43 0.0015 27.4 5.8 42 356-397 52-93 (127)
267 2vkj_A TM1634; membrane protei 42.2 49 0.0017 27.0 5.6 36 127-162 52-87 (106)
268 3f8m_A GNTR-family protein tra 42.1 68 0.0023 29.8 7.7 67 333-404 13-80 (248)
269 1pc2_A Mitochondria fission pr 41.8 1.5E+02 0.0052 25.9 9.4 87 98-193 10-99 (152)
270 2pzi_A Probable serine/threoni 41.7 33 0.0011 36.4 6.1 73 115-191 488-560 (681)
271 2fa5_A Transcriptional regulat 41.4 61 0.0021 27.0 6.7 43 355-397 61-103 (162)
272 2fbi_A Probable transcriptiona 41.4 1.2E+02 0.0041 24.3 8.4 45 354-398 47-91 (142)
273 2p5v_A Transcriptional regulat 41.3 27 0.00091 30.1 4.4 48 346-394 14-64 (162)
274 3deu_A Transcriptional regulat 41.0 85 0.0029 26.7 7.7 62 352-413 63-127 (166)
275 2hs5_A Putative transcriptiona 40.9 54 0.0019 30.1 6.8 67 334-402 28-94 (239)
276 2x4h_A Hypothetical protein SS 40.9 72 0.0025 26.1 7.0 55 353-411 27-81 (139)
277 3u3w_A Transcriptional activat 40.8 2.1E+02 0.007 25.9 19.3 76 125-200 72-150 (293)
278 2cfx_A HTH-type transcriptiona 40.7 29 0.00099 29.3 4.5 43 352-394 14-59 (144)
279 3bro_A Transcriptional regulat 40.7 58 0.002 26.3 6.3 40 357-396 50-89 (141)
280 3sxy_A Transcriptional regulat 40.7 73 0.0025 28.5 7.5 67 334-402 12-78 (218)
281 3ech_A MEXR, multidrug resista 40.5 33 0.0011 28.2 4.7 46 353-398 47-92 (142)
282 3mn2_A Probable ARAC family tr 40.3 32 0.0011 27.3 4.5 39 339-380 3-41 (108)
283 1zu2_A Mitochondrial import re 39.9 1E+02 0.0035 27.1 8.1 43 118-160 26-78 (158)
284 3bj6_A Transcriptional regulat 39.9 80 0.0028 25.8 7.2 41 354-394 51-91 (152)
285 2nyx_A Probable transcriptiona 39.8 66 0.0023 27.3 6.8 43 355-397 57-99 (168)
286 3nrv_A Putative transcriptiona 39.4 44 0.0015 27.4 5.4 44 353-396 50-93 (148)
287 2glo_A Brinker CG9653-PA; prot 39.1 54 0.0018 23.3 5.2 39 334-379 5-47 (59)
288 3eco_A MEPR; mutlidrug efflux 38.8 55 0.0019 26.5 5.9 42 356-397 46-87 (139)
289 2hzt_A Putative HTH-type trans 38.7 1.4E+02 0.0049 23.5 8.4 51 344-396 16-67 (107)
290 3e6m_A MARR family transcripti 38.4 46 0.0016 28.0 5.5 42 355-396 65-106 (161)
291 2zkz_A Transcriptional repress 38.1 87 0.003 24.5 6.8 50 339-390 24-73 (99)
292 1ouv_A Conserved hypothetical 38.0 2.1E+02 0.0071 25.1 16.4 61 127-193 5-70 (273)
293 4aik_A Transcriptional regulat 37.9 1.4E+02 0.0048 25.0 8.6 64 353-416 42-108 (151)
294 3s2w_A Transcriptional regulat 37.8 50 0.0017 27.6 5.6 43 355-397 62-104 (159)
295 2w25_A Probable transcriptiona 37.7 51 0.0017 27.8 5.6 50 344-394 9-61 (150)
296 2qww_A Transcriptional regulat 37.4 38 0.0013 28.1 4.7 42 355-396 53-96 (154)
297 3bwg_A Uncharacterized HTH-typ 37.3 64 0.0022 29.7 6.7 67 335-403 6-73 (239)
298 3nqo_A MARR-family transcripti 37.0 67 0.0023 28.1 6.5 45 354-398 54-98 (189)
299 2pmr_A Uncharacterized protein 36.8 47 0.0016 26.7 4.8 33 125-157 36-68 (87)
300 2w48_A Sorbitol operon regulat 36.7 58 0.002 31.2 6.5 48 343-390 7-54 (315)
301 2fu4_A Ferric uptake regulatio 36.7 64 0.0022 24.2 5.5 47 342-388 17-69 (83)
302 1nxh_A MTH396 protein; hypothe 36.5 10 0.00036 32.5 0.9 42 337-380 4-45 (126)
303 2o8x_A Probable RNA polymerase 36.5 40 0.0014 24.1 4.1 29 355-383 29-57 (70)
304 1lj9_A Transcriptional regulat 36.3 70 0.0024 26.0 6.2 43 354-396 40-82 (144)
305 1hw1_A FADR, fatty acid metabo 36.3 56 0.0019 29.5 6.1 66 334-401 7-73 (239)
306 3rjv_A Putative SEL1 repeat pr 36.2 2.1E+02 0.0072 24.7 9.9 49 109-157 104-158 (212)
307 3g3z_A NMB1585, transcriptiona 36.0 52 0.0018 26.9 5.3 43 353-395 41-83 (145)
308 2h6f_A Protein farnesyltransfe 36.0 3.2E+02 0.011 26.6 19.9 175 122-319 91-271 (382)
309 3iuo_A ATP-dependent DNA helic 35.6 49 0.0017 27.7 5.0 33 356-388 31-64 (122)
310 2jn6_A Protein CGL2762, transp 35.5 59 0.002 25.2 5.3 41 344-385 11-51 (97)
311 3ic7_A Putative transcriptiona 35.4 12 0.00041 31.4 1.2 67 334-402 11-78 (126)
312 3n71_A Histone lysine methyltr 35.3 1.1E+02 0.0037 31.6 8.6 82 114-197 378-467 (490)
313 1pdn_C Protein (PRD paired); p 35.3 74 0.0025 25.1 6.0 41 344-387 23-63 (128)
314 2oo2_A Hypothetical protein AF 35.2 52 0.0018 26.4 4.8 33 125-157 32-64 (86)
315 2h09_A Transcriptional regulat 35.2 1.3E+02 0.0043 25.2 7.8 35 355-389 52-86 (155)
316 3k0l_A Repressor protein; heli 35.1 54 0.0019 27.6 5.4 46 353-398 56-101 (162)
317 2pex_A Transcriptional regulat 34.9 61 0.0021 26.8 5.6 43 354-396 58-100 (153)
318 2di3_A Bacterial regulatory pr 34.8 87 0.003 28.4 7.1 70 335-404 5-77 (239)
319 2p7v_B Sigma-70, RNA polymeras 34.7 52 0.0018 23.9 4.5 32 355-386 23-54 (68)
320 3tgn_A ADC operon repressor AD 34.7 62 0.0021 26.4 5.6 53 344-398 40-92 (146)
321 2ia0_A Putative HTH-type trans 34.5 39 0.0013 29.7 4.4 48 346-394 21-71 (171)
322 2e1c_A Putative HTH-type trans 34.2 41 0.0014 29.5 4.6 51 343-394 28-81 (171)
323 2jrt_A Uncharacterized protein 34.2 28 0.00097 28.2 3.2 46 339-386 33-78 (95)
324 2elh_A CG11849-PA, LD40883P; s 34.0 67 0.0023 24.7 5.3 41 334-381 22-62 (87)
325 1s3j_A YUSO protein; structura 33.8 50 0.0017 27.3 4.9 43 354-396 48-90 (155)
326 3hug_A RNA polymerase sigma fa 33.6 43 0.0015 25.9 4.1 30 354-383 50-79 (92)
327 3t5x_A PCI domain-containing p 33.5 2.7E+02 0.0091 25.1 13.5 57 124-180 10-68 (203)
328 1ku3_A Sigma factor SIGA; heli 33.4 48 0.0016 24.5 4.2 29 356-384 29-57 (73)
329 3bja_A Transcriptional regulat 33.4 55 0.0019 26.3 5.0 42 355-396 45-86 (139)
330 4b8x_A SCO5413, possible MARR- 33.1 73 0.0025 26.7 5.8 47 353-399 47-93 (147)
331 3jw4_A Transcriptional regulat 33.0 61 0.0021 26.7 5.3 45 356-400 56-100 (148)
332 2jsc_A Transcriptional regulat 32.9 78 0.0027 25.7 5.8 56 335-392 14-69 (118)
333 2pg4_A Uncharacterized protein 32.8 81 0.0028 24.3 5.7 38 351-388 23-62 (95)
334 2a9u_A Ubiquitin carboxyl-term 32.6 1.2E+02 0.0042 26.3 7.3 68 128-197 42-113 (144)
335 1yyv_A Putative transcriptiona 32.4 2.1E+02 0.0071 23.7 8.6 54 341-396 34-88 (131)
336 1z7u_A Hypothetical protein EF 32.4 1.9E+02 0.0065 23.0 8.8 42 355-396 33-75 (112)
337 3fm5_A Transcriptional regulat 32.3 93 0.0032 25.6 6.4 43 356-398 53-95 (150)
338 2hin_A GP39, repressor protein 32.0 43 0.0015 25.6 3.7 29 350-380 5-33 (71)
339 3cdh_A Transcriptional regulat 32.0 61 0.0021 26.8 5.1 43 353-395 53-95 (155)
340 2xze_A STAM-binding protein; h 31.9 1.4E+02 0.0047 25.9 7.5 63 127-197 39-112 (146)
341 4hbl_A Transcriptional regulat 31.8 39 0.0013 28.1 3.8 60 354-413 52-114 (149)
342 1uly_A Hypothetical protein PH 31.6 86 0.0029 28.1 6.3 54 335-390 13-66 (192)
343 3qww_A SET and MYND domain-con 31.3 65 0.0022 32.7 6.1 44 114-157 367-411 (433)
344 1k78_A Paired box protein PAX5 31.1 88 0.003 26.0 6.0 43 342-387 36-78 (149)
345 2lnb_A Z-DNA-binding protein 1 31.1 1.2E+02 0.004 24.1 6.0 49 339-387 16-64 (80)
346 3ffl_A Anaphase-promoting comp 30.9 1.1E+02 0.0039 27.3 6.9 63 128-190 63-147 (167)
347 3mv2_B Coatomer subunit epsilo 30.9 3.7E+02 0.013 25.9 12.3 63 129-195 175-241 (310)
348 1r1t_A Transcriptional repress 30.7 1.2E+02 0.0043 24.8 6.8 47 342-390 46-92 (122)
349 3oio_A Transcriptional regulat 30.5 36 0.0012 27.3 3.3 41 337-380 6-46 (113)
350 3f6v_A Possible transcriptiona 30.3 66 0.0023 27.7 5.1 57 334-392 50-106 (151)
351 1tty_A Sigma-A, RNA polymerase 30.2 55 0.0019 25.2 4.2 28 356-383 37-64 (87)
352 4fye_A SIDF, inhibitor of grow 29.9 1.6E+02 0.0056 29.7 8.4 77 72-179 562-641 (761)
353 1j5y_A Transcriptional regulat 29.8 86 0.0029 27.7 6.0 47 342-388 20-68 (187)
354 1z91_A Organic hydroperoxide r 29.7 83 0.0028 25.6 5.5 42 354-395 51-92 (147)
355 3lsg_A Two-component response 29.5 86 0.003 24.4 5.4 40 339-380 3-42 (103)
356 2eth_A Transcriptional regulat 29.0 1.5E+02 0.0053 24.3 7.2 43 354-396 55-97 (154)
357 3boq_A Transcriptional regulat 28.7 56 0.0019 27.2 4.3 44 353-396 58-101 (160)
358 3cjn_A Transcriptional regulat 28.6 1.3E+02 0.0044 25.0 6.7 43 354-396 63-105 (162)
359 3oou_A LIN2118 protein; protei 28.4 80 0.0027 24.9 5.0 39 339-380 6-44 (108)
360 2xvc_A ESCRT-III, SSO0910; cel 27.8 63 0.0021 24.1 3.8 32 356-387 24-55 (59)
361 3kp7_A Transcriptional regulat 27.7 76 0.0026 26.1 5.0 44 354-397 48-93 (151)
362 1bl0_A Protein (multiple antib 27.3 51 0.0017 27.1 3.7 40 337-379 10-49 (129)
363 3dkw_A DNR protein; CRP-FNR, H 27.2 71 0.0024 27.8 4.9 46 354-403 175-220 (227)
364 2bv6_A MGRA, HTH-type transcri 27.1 87 0.003 25.3 5.2 43 354-396 48-90 (142)
365 3dv8_A Transcriptional regulat 27.0 1.2E+02 0.0041 26.2 6.4 44 355-402 167-210 (220)
366 3f3x_A Transcriptional regulat 26.8 1.1E+02 0.0036 25.0 5.7 45 354-399 48-92 (144)
367 3nau_A Zinc fingers and homeob 26.8 45 0.0015 25.4 3.0 22 359-380 33-54 (66)
368 1x2m_A LAG1 longevity assuranc 26.7 49 0.0017 24.9 3.1 26 355-380 25-51 (64)
369 3bqz_B HTH-type transcriptiona 26.6 65 0.0022 26.9 4.4 34 336-372 4-37 (194)
370 3la7_A Global nitrogen regulat 26.5 81 0.0028 28.3 5.3 47 354-404 190-236 (243)
371 2k9l_A RNA polymerase sigma fa 26.3 58 0.002 24.9 3.6 25 357-381 48-72 (76)
372 1fse_A GERE; helix-turn-helix 26.3 84 0.0029 22.6 4.5 29 355-383 24-52 (74)
373 3eqx_A FIC domain containing t 26.2 1.4E+02 0.0049 29.7 7.4 38 351-388 305-342 (373)
374 2xi8_A Putative transcription 26.2 60 0.0021 22.5 3.5 26 353-378 10-35 (66)
375 3e6c_C CPRK, cyclic nucleotide 26.1 98 0.0033 27.7 5.8 43 355-401 175-217 (250)
376 1akh_A Protein (mating-type pr 26.0 47 0.0016 23.8 2.9 21 360-380 35-55 (61)
377 3bvo_A CO-chaperone protein HS 25.8 3.8E+02 0.013 24.3 12.6 30 164-193 163-192 (207)
378 2vxz_A Pyrsv_GP04; viral prote 25.7 1E+02 0.0036 27.4 5.5 41 347-388 15-55 (165)
379 2l02_A Uncharacterized protein 25.4 1.4E+02 0.0047 23.7 5.6 45 355-401 20-64 (82)
380 3rkq_A Homeobox protein NKX-2. 25.3 51 0.0017 23.2 2.9 22 359-380 31-52 (58)
381 3qwp_A SET and MYND domain-con 25.3 96 0.0033 31.2 6.1 43 115-157 357-400 (429)
382 1x2n_A Homeobox protein pknox1 25.2 73 0.0025 23.7 4.0 30 352-381 31-61 (73)
383 1bia_A BIRA bifunctional prote 25.1 1.3E+02 0.0045 29.0 6.8 44 344-387 6-49 (321)
384 1ig7_A Homeotic protein MSX-1; 25.1 59 0.002 23.0 3.3 21 360-380 30-50 (58)
385 4ev0_A Transcription regulator 25.0 80 0.0027 27.3 4.8 46 353-402 159-204 (216)
386 1k61_A Mating-type protein alp 24.8 52 0.0018 23.5 3.0 29 353-381 23-52 (60)
387 2k9s_A Arabinose operon regula 24.8 89 0.0031 24.5 4.7 25 356-380 19-43 (107)
388 3k2z_A LEXA repressor; winged 24.6 98 0.0034 27.4 5.4 38 351-388 17-55 (196)
389 1jgg_A Segmentation protein EV 24.5 52 0.0018 23.6 2.9 21 360-380 31-51 (60)
390 3ff5_A PEX14P, peroxisomal bio 24.5 81 0.0028 23.1 3.8 41 89-134 13-53 (54)
391 2oz6_A Virulence factor regula 24.4 85 0.0029 26.9 4.8 41 356-400 163-203 (207)
392 3kz3_A Repressor protein CI; f 24.3 1.5E+02 0.0051 21.7 5.7 27 352-378 20-46 (80)
393 2oa4_A SIR5; structure, struct 24.2 60 0.0021 26.7 3.5 39 344-383 38-76 (101)
394 2jpc_A SSRB; DNA binding prote 24.2 70 0.0024 22.3 3.6 29 355-383 11-39 (61)
395 3kz3_A Repressor protein CI; f 24.2 24 0.00081 26.4 1.0 25 359-383 56-80 (80)
396 2r1j_L Repressor protein C2; p 24.1 64 0.0022 22.5 3.3 26 353-378 14-39 (68)
397 1b89_A Protein (clathrin heavy 23.9 68 0.0023 33.1 4.6 69 110-191 106-174 (449)
398 3u64_A Protein TP_0956; tetrat 23.8 1.9E+02 0.0065 28.2 7.6 77 116-193 185-268 (301)
399 2zvv_Y Cyclin-dependent kinase 23.7 21 0.00073 22.0 0.5 11 46-56 5-15 (26)
400 2ijq_A Hypothetical protein; s 23.7 3.7E+02 0.013 23.7 8.8 75 123-197 27-107 (161)
401 1r69_A Repressor protein CI; g 23.5 72 0.0024 22.4 3.5 26 353-378 10-35 (69)
402 2x48_A CAG38821; archeal virus 23.5 61 0.0021 22.3 3.0 24 356-379 30-53 (55)
403 3col_A Putative transcription 23.4 81 0.0028 26.2 4.4 35 335-372 11-45 (196)
404 3aji_B S6C, proteasome (prosom 23.3 1.1E+02 0.0039 23.0 4.9 41 341-381 3-47 (83)
405 3ryp_A Catabolite gene activat 23.3 89 0.0031 26.8 4.8 40 357-400 167-206 (210)
406 2h6f_A Protein farnesyltransfe 23.2 5.2E+02 0.018 25.0 22.1 76 115-193 153-228 (382)
407 2fsw_A PG_0823 protein; alpha- 23.1 2.1E+02 0.0073 22.4 6.7 50 344-395 27-77 (107)
408 2l01_A Uncharacterized protein 23.1 1.6E+02 0.0054 23.1 5.5 53 346-401 14-67 (77)
409 1jko_C HIN recombinase, DNA-in 23.0 42 0.0014 22.2 2.0 23 357-379 21-43 (52)
410 3a02_A Homeobox protein arista 22.9 58 0.002 23.3 2.9 28 354-381 22-50 (60)
411 3iwz_A CAP-like, catabolite ac 22.9 90 0.0031 27.2 4.8 41 357-401 187-227 (230)
412 4fx0_A Probable transcriptiona 22.8 2E+02 0.007 23.9 6.9 44 356-400 51-94 (148)
413 1r7j_A Conserved hypothetical 22.5 2.8E+02 0.0097 21.7 7.8 43 348-390 11-53 (95)
414 1zug_A Phage 434 CRO protein; 22.5 77 0.0026 22.3 3.5 26 353-378 12-37 (71)
415 1uxc_A FRUR (1-57), fructose r 22.4 60 0.0021 24.1 2.9 21 358-378 1-21 (65)
416 2iu5_A DHAS, YCEG, HTH-type dh 22.4 78 0.0027 26.8 4.1 35 335-372 14-48 (195)
417 3a03_A T-cell leukemia homeobo 22.3 70 0.0024 22.6 3.2 21 360-380 27-47 (56)
418 3d0s_A Transcriptional regulat 22.2 75 0.0026 27.8 4.1 45 354-402 174-218 (227)
419 3mzy_A RNA polymerase sigma-H 22.1 95 0.0032 25.4 4.5 30 354-383 121-150 (164)
420 2ooe_A Cleavage stimulation fa 22.0 2E+02 0.0069 28.5 7.8 75 115-192 307-383 (530)
421 3nft_A Translocator protein BI 22.0 79 0.0027 30.8 4.3 111 270-413 123-233 (303)
422 1zyb_A Transcription regulator 21.8 1.4E+02 0.0047 26.4 5.8 45 354-402 183-227 (232)
423 2w84_A Peroxisomal membrane pr 21.8 1.3E+02 0.0046 23.1 4.8 40 91-135 20-59 (70)
424 2da1_A Alpha-fetoprotein enhan 21.7 69 0.0024 23.6 3.2 23 359-381 36-58 (70)
425 2wte_A CSA3; antiviral protein 21.7 2.3E+02 0.0079 26.3 7.6 45 344-389 154-198 (244)
426 3hho_A CO-chaperone protein HS 21.6 4.1E+02 0.014 23.2 14.0 33 161-193 125-157 (174)
427 2o03_A Probable zinc uptake re 21.5 1.6E+02 0.0055 24.3 5.8 58 340-398 9-71 (131)
428 3qkx_A Uncharacterized HTH-typ 21.5 86 0.0029 25.9 4.1 34 336-372 10-43 (188)
429 1xi4_A Clathrin heavy chain; a 21.4 3E+02 0.01 33.0 9.7 22 130-151 1107-1128(1630)
430 1j9i_A GPNU1 DBD;, terminase s 21.3 51 0.0017 24.2 2.3 23 358-380 3-25 (68)
431 3ppb_A Putative TETR family tr 21.3 94 0.0032 25.7 4.4 36 335-373 10-45 (195)
432 3e97_A Transcriptional regulat 21.2 1E+02 0.0035 27.0 4.8 44 354-401 172-215 (231)
433 1sgm_A Putative HTH-type trans 21.2 79 0.0027 26.2 3.9 34 335-371 7-40 (191)
434 1rr7_A Middle operon regulator 21.2 1.8E+02 0.006 24.6 6.0 44 333-380 71-115 (129)
435 1x3u_A Transcriptional regulat 21.1 1.9E+02 0.0064 21.0 5.6 32 355-386 29-60 (79)
436 2hdd_A Protein (engrailed home 21.0 75 0.0026 22.8 3.2 21 360-380 33-53 (61)
437 2cra_A Homeobox protein HOX-B1 20.9 77 0.0026 23.4 3.3 22 360-381 37-58 (70)
438 2g7s_A Transcriptional regulat 20.9 1E+02 0.0034 25.5 4.5 36 335-373 9-44 (194)
439 2fxa_A Protease production reg 20.9 1.2E+02 0.004 27.1 5.2 61 355-415 60-123 (207)
440 1bw5_A ISL-1HD, insulin gene e 20.8 67 0.0023 23.4 2.9 28 354-381 26-54 (66)
441 2gau_A Transcriptional regulat 20.7 1.1E+02 0.0039 26.7 5.0 45 354-402 177-221 (232)
442 1je8_A Nitrate/nitrite respons 20.6 1.2E+02 0.0041 22.9 4.5 30 355-384 34-63 (82)
443 1xi4_A Clathrin heavy chain; a 20.5 1.2E+03 0.04 28.1 23.7 107 43-158 1057-1164(1630)
444 2dmu_A Homeobox protein goosec 20.5 69 0.0024 23.7 2.9 21 360-380 37-57 (70)
445 1du6_A PBX1, homeobox protein 20.3 70 0.0024 23.1 2.9 29 353-381 28-57 (64)
446 3u2r_A Regulatory protein MARR 20.2 1.4E+02 0.0048 25.0 5.3 44 356-399 61-104 (168)
447 2da2_A Alpha-fetoprotein enhan 20.0 82 0.0028 23.2 3.3 22 360-381 37-58 (70)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-50 Score=417.85 Aligned_cols=387 Identities=11% Similarity=0.157 Sum_probs=268.2
Q ss_pred cccchhhHHHHhhcCCCCH---HHHHHHHHHHHccCCCchHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 013640 16 RHLVFPLLEFLQERQMYPD---EQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPI 92 (439)
Q Consensus 16 ~hl~lpll~fl~~~~~y~~---~~l~~a~~~llk~TnM~dy~~~~~~~l~~~~~~p~e~~~k~~ev~~~l~~l~~~~~~~ 92 (439)
|.+-++.+.|+...+-.+. ++.++..+++++.|||+|||..+++++.+....+.....++...+.....+.+. +
T Consensus 22 P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~---~ 98 (429)
T 4b4t_R 22 PNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQE---L 98 (429)
T ss_dssp --------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCS---S
T ss_pred CChHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHH---H
Confidence 4555778888876654433 788999999999999999999999998754333333333333332221111110 1
Q ss_pred HHhh--CChhHHHHhhhcchhccHHHHHH-hcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHH
Q 013640 93 VSFL--QNPNSFQDLRANDQHYNLQMLHD-RYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALW 169 (439)
Q Consensus 93 ~~~~--~~~e~~~~l~~~dk~~n~~~l~~-~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lw 169 (439)
++.+ .+++..+.+.+ .+...++ +.| +.|++++.+++|+||++||||++|.+++..++..|++++.+++.+|
T Consensus 99 ~~~~~~~n~~~l~~l~~-----~~~~~~~~~~~-e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l 172 (429)
T 4b4t_R 99 YNELCKKNESKIKELNE-----KIQKLEEDDEG-ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVML 172 (429)
T ss_dssp CTTTTCCSSCCHHHHHH-----HHHHHHHCCSC-CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhhccc-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 1111 11222222221 1233344 455 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHhhc
Q 013640 170 GKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNA 249 (439)
Q Consensus 170 g~la~eIl~~~w~~a~~~l~klke~id~~~~~~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt~~ 249 (439)
+.+++.++.+||..+...++|++.+++++++| .+...+....|++||+. +++..+...|+|+|.+..+...+ .+
T Consensus 173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~-~~~~~lk~~~gl~~l~~---r~f~~Aa~~f~e~~~t~~~~e~~--~~ 246 (429)
T 4b4t_R 173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW-ERRNRYKTYYGIHCLAV---RNFKEAAKLLVDSLATFTSIELT--SY 246 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT-HHHHHHHHHHHHGGGGT---SCHHHHHHHHHHHHHHSCCSCHH--HH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH-HHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHhccCCccchh--hH
Confidence 99999999999999999999999999997776 34556778889999986 45667888899988766555544 34
Q ss_pred hhHHHHHHHHHHHhccccc----ch--HHHHHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCccccc
Q 013640 250 PHLLRYLATAFIVNKRRRP----QF--KDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGK 323 (439)
Q Consensus 250 p~lLrYlvva~il~~~r~~----~l--~~i~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~ 323 (439)
..++.|.+++++++.+|.+ ++ +++..+...+ +.-+++++|+.++|....++-++..+..+...+..|+||
T Consensus 247 ~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~--p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l-- 322 (429)
T 4b4t_R 247 ESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTT--AALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYL-- 322 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTS--
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCC--hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHH--
Confidence 5688999999999998844 33 4455544443 123569999999999776555566677788899999999
Q ss_pred ccccccccccccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCC
Q 013640 324 RVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT 403 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~ 403 (439)
++|.++|.+++|..++.+||+||++|+|+.||+.||+|++++|+||++||.+|+|+||||+++|+|++++|
T Consensus 323 ---------~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 323 ---------NRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--chhHHHHHHhhhhhhhHHHHHHHHHH
Q 013640 404 H--PNVYEQLIDHTKGLSGRTYKLVGQLL 430 (439)
Q Consensus 404 ~--~~~yqqvi~kt~~L~~R~q~L~~~i~ 430 (439)
+ +++||++|++||.|++|+|+|+++|+
T Consensus 394 d~~~~~y~~~i~~gd~Ll~riqkl~~~i~ 422 (429)
T 4b4t_R 394 DNKNAQYHLLVKQGDGLLTKLQKYGAAVR 422 (429)
T ss_dssp -----------------------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 58999999999999999999999986
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.96 E-value=7.1e-29 Score=255.21 Aligned_cols=270 Identities=13% Similarity=0.152 Sum_probs=196.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC----CCC-CChHH
Q 013640 132 YQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDP----KSF-TSPLN 206 (439)
Q Consensus 132 ~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~----~~~-~~~l~ 206 (439)
.++|++|++.|+|.+|.+.+..++..|+..+. .+.+.+.+++||.++ .+.+++.|+|..+.+. +.+ .+|..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~---~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTY---HALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHH---HHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 48999999999999999999999998876433 488999999999986 4666677777766653 223 56642
Q ss_pred --HHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHhhchhHHHHHHHHHHHhcccccchHHHHHHHhhh-ccC
Q 013640 207 --QMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQE-QNS 283 (439)
Q Consensus 207 --~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~vi~qe-~~~ 283 (439)
.+..-..++|-+ .-.++..|...|+|.|. +|.++.......+++|+++++|++.+| +|+-+++.++ ...
T Consensus 179 ~a~i~~~~Gi~~l~--~~rdyk~A~~~F~eaf~--~f~~~~~~~~~~~lkYlvL~aLl~~~r----~el~~~l~~~~~~~ 250 (394)
T 3txn_A 179 QGALDLQSGILHAA--DERDFKTAFSYFYEAFE--GFDSVDSVKALTSLKYMLLCKIMLGQS----DDVNQLVSGKLAIT 250 (394)
T ss_dssp HHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHHTTCG----GGHHHHHHSHHHHT
T ss_pred HHHHHHHhhHHHHH--hccCHHHHHHHHHHHHh--cccccccHHHHHHHHHHHHHHHHcCCH----HHHHHHhccccccc
Confidence 233333332210 12334578888888875 332222222234999999999999987 3344445554 345
Q ss_pred Ccch----HHHHHHHhhhcCChhHHHHHHHHHHHHhcCCcccccccccccccccccHHHHHHHHHHHHHHHhhhhhcccc
Q 013640 284 YKDP----ITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRID 359 (439)
Q Consensus 284 Y~Dp----it~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife~ycriy~~I~ 359 (439)
|.+| +.+++ +.|.+.|+.+|++.|...+..+..|+|| .+|.+.+.+++|...+.++++||++|+
T Consensus 251 ~~~pei~~l~~L~-~a~~~~dl~~f~~iL~~~~~~l~~D~~l-----------~~h~~~L~~~Ir~~~L~~i~~pYsrIs 318 (394)
T 3txn_A 251 YSGRDIDAMKSVA-EASHKRSLADFQAALKEYKKELAEDVIV-----------QAHLGTLYDTMLEQNLCRIIEPYSRVQ 318 (394)
T ss_dssp TCSHHHHHHHHHH-HHHHTTCHHHHHHHHHHSTTTTTTSHHH-----------HHHHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred cCCccHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhcChHH-----------HHHHHHHHHHHHHHHHHHHhHhhceee
Confidence 7777 67777 5688899999999999999999999999 789999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC--chhHHHHHHhhhhhhhHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH--PNVYEQLIDHTKGLSGRTYKL 425 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~--~~~yqqvi~kt~~L~~R~q~L 425 (439)
++.||+.||+|++++|.+|+++|++|+|+|+||+++|+|++++++ ++.|+++++.+..|..-+..|
T Consensus 319 l~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L 386 (394)
T 3txn_A 319 VAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTL 386 (394)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC------------------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 679999998665555444433
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=7.4e-21 Score=188.91 Aligned_cols=281 Identities=9% Similarity=0.071 Sum_probs=194.7
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc---chhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS---ERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDP 198 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~---~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~ 198 (439)
+-+.........+|+++.+.|+|+.|.+++......+... ......+....++-...+||+.|...+.++.....+
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~- 207 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS- 207 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc-
Confidence 3355567788999999999999999999999988877653 234777888888888899999999999988876654
Q ss_pred CCCCChHHHHHHHHHHHHHHHHH-HhcCccchHHHHHHhccc--cchhHHHhhchhHHHHHHHHHHHhcccccchHHHHH
Q 013640 199 KSFTSPLNQMQSRIWLMHWSLFI-FFNHDNGRTLIIDLFNQD--KYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIK 275 (439)
Q Consensus 199 ~~~~~~l~~l~~R~WllHwsLf~-~fn~~~~~~~l~d~F~~~--~yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~ 275 (439)
+.+|. ..+.+.|...+.++. .-++..+...+.+.|... .........+.+.+.|.+++.+.+..+.. ...
T Consensus 208 --~~~~~-~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~ 280 (434)
T 4b4t_Q 208 --IYCPT-QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDD----VKN 280 (434)
T ss_dssp --SCCCH-HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHH----HHH
T ss_pred --CCCch-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhH----HHh
Confidence 22332 233444444333332 122345555565555411 01111122345688999999988754422 122
Q ss_pred H-HhhhccCCc-ch----HHHHHHHhhhcCChhHHHHHHHHHHHHhcCCcccccccccccccccccHHHHHHHHHHHHHH
Q 013640 276 V-IQQEQNSYK-DP----ITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFE 349 (439)
Q Consensus 276 v-i~qe~~~Y~-Dp----it~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife 349 (439)
. ..++...|. +| +..++ ..|.+.++..+++.+......+..|.|+ ..|.+.+.+++|...+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~l~ 348 (434)
T 4b4t_Q 281 ILNAKYTKETYQSRGIDAMKAVA-EAYNNRSLLDFNTALKQYEKELMGDELT-----------RSHFNALYDTLLESNLC 348 (434)
T ss_dssp HHHCSSSSTTCCCHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHHHHTCSHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHH-HHHHhhhHHHHHHHHHHHHHHHcccHHH-----------HHHHHHHHHHHHHHHHH
Confidence 1 223333332 33 55666 5578899999999999999999999999 78999999999999999
Q ss_pred HhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC--chhHHHHHHhhhhhhhHH
Q 013640 350 TYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH--PNVYEQLIDHTKGLSGRT 422 (439)
Q Consensus 350 ~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~--~~~yqqvi~kt~~L~~R~ 422 (439)
+++++|++|+++.||+.||+|++++|+||+++|.+|+++||||+++|+|++..++ ...|+++++..+.|..-+
T Consensus 349 ~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~v 423 (434)
T 4b4t_Q 349 KIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKVV 423 (434)
T ss_dssp HHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-----------------------
T ss_pred HHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776 468998887766654433
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.5e-16 Score=163.87 Aligned_cols=291 Identities=14% Similarity=0.139 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc---chhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCCChH
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNS---ERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPL 205 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~---~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~~~~~~~l 205 (439)
.--.++|+++.+.|+|.+|.++|..+..-|.+. ..++......+++-+..+||..|..-++|++....+ ...+|.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~--~~~~~~ 215 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK--NPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--SSCCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc--cCCcHH
Confidence 344789999999999999999999988776543 456899999999999999999999999998765554 223443
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHhhchhHHHHHHHHHHHhcccccchHHHHHHHhhhccCCc
Q 013640 206 NQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYK 285 (439)
Q Consensus 206 ~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~vi~qe~~~Y~ 285 (439)
-+..-+.-......+ -.++..+...+.+.|..+.-.. -...+..+|+|.+++.|++... +...+++.-+... +..+
T Consensus 216 lk~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~~~~~~-d~~~~~~~L~~~v~~~iLa~~~-~~~~~ll~~~~~~-~~~~ 291 (445)
T 4b4t_P 216 LKLEYYNLLVKISLH-KREYLEVAQYLQEIYQTDAIKS-DEAKWKPVLSHIVYFLVLSPYG-NLQNDLIHKIQND-NNLK 291 (445)
T ss_dssp HHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSSCS-STTHHHHHSHHHH-SSCH
T ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcccccC-CHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHhhc-cccc
Confidence 222211111100000 1112345555666555221000 0112335789999999887543 3344444433332 1122
Q ss_pred --chHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCcccccccccccccccccHHHHHHHHHHHHHHHhhhhhccccHHHH
Q 013640 286 --DPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVL 363 (439)
Q Consensus 286 --Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife~ycriy~~I~I~~l 363 (439)
+++..++ ..|.+-+...+...+...+..+..|.+.. .......|...+.++++...+..+.++|++|+++.|
T Consensus 292 ~l~~~~~L~-k~f~~~~L~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~l 365 (445)
T 4b4t_P 292 KLESQESLV-KLFTTNELMRWPIVQKTYEPVLNEDDLAF-----GGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRL 365 (445)
T ss_dssp HHHHHHHHH-HHHHHCCSSSHHHHHHHTCSSTTTCCSSC-----CCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHH
T ss_pred ccHHHHHHH-HHHHhchHhhhHHHHHHHHHHhcccchhh-----hcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHH
Confidence 3477777 55777777777788888888888887751 111123578899999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC--chhHHHHHHhhhhhhhHHHHHHHHHHh
Q 013640 364 AEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH--PNVYEQLIDHTKGLSGRTYKLVGQLLE 431 (439)
Q Consensus 364 A~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~--~~~yqqvi~kt~~L~~R~q~L~~~i~~ 431 (439)
|+.||+|++++|++|+++|.+|+++||||+++|+|+..++. +.+..+-....+.|+..+++.+..|.+
T Consensus 366 a~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~k 435 (445)
T 4b4t_P 366 NELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITK 435 (445)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC---------------------------------
T ss_pred HHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765 346666666777777777777776654
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.4e-14 Score=148.58 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=164.5
Q ss_pred HHHhcCChhhHHHHHHHHHhhccc--------------cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCC
Q 013640 137 FQFECGNYSGAADYLYQYRALCTN--------------SERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFT 202 (439)
Q Consensus 137 ~~y~~Gdy~~A~~~L~~~~~~~~~--------------~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~~~~~ 202 (439)
....++|.++|.++|..+...... .+..+-+.-.+.+.-+..+|-+.|.+.+++++..+++.+++.
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 345678999999999887655421 112233333344455667899999999999999999877774
Q ss_pred ChHHHHHHHHHHHHHHHHHH----hcCccchHHHHHHhccccchhHHHhhchhHHHHHHHHHHHhcccccchHHHHH--H
Q 013640 203 SPLNQMQSRIWLMHWSLFIF----FNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIK--V 276 (439)
Q Consensus 203 ~~l~~l~~R~WllHwsLf~~----fn~~~~~~~l~d~F~~~~yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~--v 276 (439)
.+.. .. .|++.--+ +++...+...+..+........+....-..+.|.++.+++..++...|-+++. .
T Consensus 165 ~~v~-~~-----~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~ 238 (393)
T 4b4t_O 165 LRIT-NS-----FYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPI 238 (393)
T ss_dssp SHHH-HH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCC
T ss_pred HHHH-HH-----HHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChH
Confidence 4332 11 11111112 22333444444433210000000001113567888877787788788877665 2
Q ss_pred HhhhccCC-cchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCcccccccccccccccccHHHHHHHHHHHHHHHhh--h
Q 013640 277 IQQEQNSY-KDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYC--R 353 (439)
Q Consensus 277 i~qe~~~Y-~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife~yc--r 353 (439)
++.-...- ..++.+++ .+|..-|+.++++.++... ...++| ..+.....+.+|++.+.+.+ +
T Consensus 239 i~~L~~~~~~~~l~~Ll-~~f~~g~~~~f~~~~~~~~---~~~~~l-----------~~~~~~l~~kirll~l~~l~~~~ 303 (393)
T 4b4t_O 239 METIVNDSNYDWLFQLL-NALTVGDFDKFDSLIKVQI---SKIPIL-----------AQHESFLRQKICLMTLIETVFVK 303 (393)
T ss_dssp TTSSCSSSSTTHHHHHH-HHHHHTCHHHHHHHCCHHH---HHSHHH-----------HHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhhcCCchHHHHHHH-HHHhcCCHHHHHHHHHHhh---hhCcch-----------hhhHHHHHHHHHHHHHHHHhccC
Confidence 22211111 13488998 6688899988887665443 356889 78999999999999998866 7
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC-----chhHHHHHHhhhhhhhHHHHHHHH
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH-----PNVYEQLIDHTKGLSGRTYKLVGQ 428 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~-----~~~yqqvi~kt~~L~~R~q~L~~~ 428 (439)
+|++|+.+.||+.||++++++|.|++++|+.|+|+||||+++|+|+++... +..-..+.++.+.|..+++.+...
T Consensus 304 ~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ 383 (393)
T 4b4t_O 304 NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKK 383 (393)
T ss_dssp SCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------
T ss_pred CCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999998643 345567778888999999999988
Q ss_pred HHhhhh
Q 013640 429 LLEHAQ 434 (439)
Q Consensus 429 i~~~~~ 434 (439)
|+..++
T Consensus 384 ve~~~~ 389 (393)
T 4b4t_O 384 MEARGQ 389 (393)
T ss_dssp ------
T ss_pred HHHhcC
Confidence 876543
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.35 E-value=1.2e-11 Score=116.40 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=122.6
Q ss_pred HHHHHhc--CccchHHHHHHhccc---cchhHHHhhchhHHHHHHHHHHHhcccccchHHHHHHHhhhccCCcchHHHHH
Q 013640 218 SLFIFFN--HDNGRTLIIDLFNQD---KYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFL 292 (439)
Q Consensus 218 sLf~~fn--~~~~~~~l~d~F~~~---~yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~vi~qe~~~Y~Dpit~f~ 292 (439)
|.+.+++ +.+|.+.|...|... ..-+.. ++|+|+|.+.|++++ .... ++. ++ +.. .|+++++
T Consensus 21 Gr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~-----~IL~yLIp~~Ll~G~-iP~~-~ll---~~--~~~-~~y~~L~ 87 (203)
T 3t5x_A 21 GRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKR-----MILIYLLPVKMLLGH-MPTV-ELL---KK--YHL-MQFAEVT 87 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHH-----HHHHHHHHHHHHTTC-EECH-HHH---HH--TTC-GGGHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHH-----HHHHHHHHHHHHcCC-CCCH-HHh---hh--Cch-hHHHHHH
Confidence 5555555 467888888888842 122223 489999999999874 2222 222 22 322 5788888
Q ss_pred HHhhhcCChhHHHHHHHHHHHHhcCCcccccccccccccccccHHHHHHHHHHHHHHHhhh------hhccccHHHHHHH
Q 013640 293 ACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCR------IHQRIDMAVLAEK 366 (439)
Q Consensus 293 ~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife~ycr------iy~~I~I~~lA~~ 366 (439)
..+..-|..+|.+.|.+.++ +|+ ..+.-..++.+|..++.+.+| +|++|+++.++.+
T Consensus 88 -~Avr~Gdl~~f~~~l~~~~~-----~f~-----------~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~ 150 (203)
T 3t5x_A 88 -RAVSEGNLLLLHEALAKHEA-----FFI-----------RCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVA 150 (203)
T ss_dssp -HHHHHTCHHHHHHHHHHTHH-----HHH-----------HHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHhHH-----HHH-----------HCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 45888999999999998774 555 334445789999999999998 6999999999999
Q ss_pred cC------CCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCc
Q 013640 367 LN------LNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHP 405 (439)
Q Consensus 367 l~------~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~ 405 (439)
|+ +|.+|+|.+++++|++|.++|+||.++|+|+.+..++
T Consensus 151 l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 151 LKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 95 5899999999999999999999999999999987663
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.33 E-value=1.3e-12 Score=106.76 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCc
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHP 405 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~ 405 (439)
...+.|+|+... .|.++|++|+|+.||+.||+|++++|++|+++|.+++|+||||+++|+|+++++++
T Consensus 11 ~L~~~v~E~nl~----~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 11 ILDRAVIEHNLL----SASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp CCCHHHHHHHHH----HHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHHHHHHHHH----HHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 345666666655 47779999999999999999999999999999999999999999999999988763
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.4e-08 Score=103.26 Aligned_cols=206 Identities=11% Similarity=0.106 Sum_probs=140.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhhcc--ccc-------hhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-hcCCCCC
Q 013640 132 YQYAKFQFECGNYSGAADYLYQYRALCT--NSE-------RRLSALWGKMAAEILMQNWDIALEELNQLKEK-VDDPKSF 201 (439)
Q Consensus 132 ~~~ak~~y~~Gdy~~A~~~L~~~~~~~~--~~~-------~k~~~lwg~la~eIl~~~w~~a~~~l~klke~-id~~~~~ 201 (439)
-.+-|.|+++|+..-|..++..+...+. +-. -..--+.|++++ +-.+|..|.+.+..+=.. ...+.
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~--~~~~y~~A~~~L~~A~~~lcp~~~-- 255 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYL--LNSQVHNAFVQFNEAFQSLLNLPL-- 255 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHH--HHccHHHHHHHHHHHHHhcCCccc--
Confidence 3455899999999999999988877543 111 124556677764 556676666665544333 22200
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHhhchhHHHHHHHHHHHhcccccchHHHHHHHhhhc
Q 013640 202 TSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQ 281 (439)
Q Consensus 202 ~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~vi~qe~ 281 (439)
.+|. ..+ +..+ +|+|+|.+.|++++- +=+.+ .++ .
T Consensus 256 ~~~~--------------------------------~~~--n~~~-----ILkyLIpv~LLlG~~--P~~~l---l~k-~ 290 (455)
T 3t5v_B 256 TNQA--------------------------------ITR--NGTR-----ILNYMIPTGLILGKM--VKWGP---LRP-F 290 (455)
T ss_dssp CCHH--------------------------------HHH--HHHH-----HHHHHHHHHHHTTCC--BCHHH---HGG-G
T ss_pred cchh--------------------------------hhh--HHHH-----HHHHHHHHHHHcCCC--CCHHH---Hcc-c
Confidence 0110 001 1122 679999999998643 22222 233 1
Q ss_pred cCCc-ch-HHHHHHHhhhcCChhHHHHHHHHHHHHhcCCcccccccccccccccccH-HHHHHHHHHHHHHHhhh-----
Q 013640 282 NSYK-DP-ITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLR-DEFLENARLFIFETYCR----- 353 (439)
Q Consensus 282 ~~Y~-Dp-it~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~-~~f~e~aR~~ife~ycr----- 353 (439)
+.+. .| ++.++ ..+..-|+.+|.+.|.+.+..+..| ++ --+++.+|..++.+.+|
T Consensus 291 ~~~~L~~~y~~L~-~AVr~Gdl~~F~~~L~~~~~~f~~~----------------gily~LlerLr~~v~RnLirkv~~~ 353 (455)
T 3t5v_B 291 LSQETIDNWSVLY-KHVRYGNIQGVSLWLRQNERHLCAR----------------QLLIVLLEKLPMVTYRNLIKTVIKS 353 (455)
T ss_dssp SCHHHHHHHHHHH-HHHHHTCHHHHHHHHHHTHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-HHHHhCCHHHHHHHHHHhHHHHHHc----------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 34 66777 4578899999999999988744333 33 45777777776655544
Q ss_pred ---hh--ccccHHHHHHHcC---------------------CCHHHHHHHHHHHhhcCccceeecccCCEEEeCCC
Q 013640 354 ---IH--QRIDMAVLAEKLN---------------------LNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT 403 (439)
Q Consensus 354 ---iy--~~I~I~~lA~~l~---------------------~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~ 403 (439)
+| ++|+++.++.+|+ ++.+++|.++|++|++|.+.|+||.++|+|+.+..
T Consensus 354 ~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 354 WTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 57 7999999999998 68999999999999999999999999999999887
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.9e-07 Score=98.84 Aligned_cols=221 Identities=13% Similarity=0.102 Sum_probs=145.6
Q ss_pred HHHHHHHhhccc--cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhc--
Q 013640 149 DYLYQYRALCTN--SERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFN-- 224 (439)
Q Consensus 149 ~~L~~~~~~~~~--~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~~~~~~~l~~l~~R~WllHwsLf~~fn-- 224 (439)
.+|..+|..|-. ....-+.+=-.|+.=+.....+.|.+-+.|.. ..+. ..+|+. .-.++-+-|-...+.
T Consensus 213 ~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~--~~sn~q----~~rY~YY~GRI~a~q~~ 285 (523)
T 4b4t_S 213 TMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-YPHT--DVSSSL----EARYFFYLSKINAIQLD 285 (523)
T ss_dssp HHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTT--TSCHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcc--cCCHHH----HHHHHHHHHHHHHHhcc
Confidence 344555554442 23333333345566666677888877777663 1121 222221 112222223333333
Q ss_pred CccchHHHHHHhcc-cc----chhHHHhhchhHHHHHHHHHHHhcccccchHHHHHHHhhhccCCc---chHHHHHHHhh
Q 013640 225 HDNGRTLIIDLFNQ-DK----YLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYK---DPITEFLACVY 296 (439)
Q Consensus 225 ~~~~~~~l~d~F~~-~~----yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~vi~qe~~~Y~---Dpit~f~~~lY 296 (439)
+.+|.+-|...|.. |. .-..++ +++|+|++.++.+. +|+- .+..+ +.++ .|..+++ ..|
T Consensus 286 Y~eA~~~L~~A~rkap~~~~a~gfr~~-----a~K~lI~V~LLlG~----iP~r-~lf~q--~~l~~~L~pY~~Lv-~Av 352 (523)
T 4b4t_S 286 YSTANEYIIAAIRKAPHNSKSLGFLQQ-----SNKLHCCIQLLMGD----IPEL-SFFHQ--SNMQKSLLPYYHLT-KAV 352 (523)
T ss_dssp HHHHHHHHHHHTSSCSCSSSCSHHHHH-----HHHHHHHHHHHHTC----CCCH-HHHTT--TSCHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhCCcchhhhhHHHH-----HHHHHHhHHhhcCC----CCCh-HHhhc--hhHHHHHHHHHHHH-HHH
Confidence 45677777777762 21 111222 66999999999763 2110 01122 3333 4677777 558
Q ss_pred hcCChhHHHHHHHHHHHHhcCCcccccccccccccccccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCC-HHHHH
Q 013640 297 VNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLN-YEEAQ 375 (439)
Q Consensus 297 ~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s-~~~~E 375 (439)
..-|.+.|...|...+..+..|.-. ..+.....++..-.+.....+|.+|++..+|.+|+++ ++++|
T Consensus 353 r~GdL~~F~~~L~~h~~~F~~Dgty------------~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE 420 (523)
T 4b4t_S 353 KLGDLKKFTSTITKYKQLLLKDDTY------------QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVE 420 (523)
T ss_dssp HHTCHHHHHHHHHHTHHHHHHTTCT------------HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHH
T ss_pred HcCCHHHHHHHHHHhcceeccCChh------------HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHH
Confidence 9999999999999999998888543 4666677777777788888999999999999999985 67899
Q ss_pred HHHHHHhhcCccceeecccCCEEEeC
Q 013640 376 RWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 376 ~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
..++++|++|.|+|.||.++|.|+..
T Consensus 421 ~iVAkmI~dG~I~A~Idh~~g~v~sk 446 (523)
T 4b4t_S 421 YMVSRAIRDGVIEAKINHEDGFIETT 446 (523)
T ss_dssp HHHHHHHHHTSSCCEECTTTCCEECC
T ss_pred HHHHHHHHcCCceEEEecCCCEEEeC
Confidence 99999999999999999999999864
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=97.96 E-value=9.9e-05 Score=67.41 Aligned_cols=127 Identities=9% Similarity=0.129 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcccccchHHHH--HHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCccccccccccccc
Q 013640 254 RYLATAFIVNKRRRPQFKDFI--KVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFA 331 (439)
Q Consensus 254 rYlvva~il~~~r~~~l~~i~--~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~ 331 (439)
.=++++++.+.. .-.|.+++ +.++.-..+=..++-+++ .+|..-+++++... + .+-+-|
T Consensus 27 ~~li~~Al~~p~-vf~F~eLL~~p~v~~L~~~~~~~~~~LL-~iF~~G~~~~y~~~-~------~~~p~L---------- 87 (169)
T 3chm_A 27 GPLIIEATSHPS-LFAFSEILALPNVAQLEGTTDSVYLDLL-RLFAHGTWGDYKCN-A------TRLPHL---------- 87 (169)
T ss_dssp HHHHHHHHHCTT-CCCCHHHHTCHHHHTTTTSTTHHHHHHH-HHHHHCCHHHHHHH-G------GGSCCC----------
T ss_pred HHHHHHHhcCCC-eeehHHHhCChHHHHhcCCChhHHHHHH-HHHhcCCHHHHHHh-H------HhCcch----------
Confidence 455666666533 34456665 344442111013477777 55676676655541 1 111223
Q ss_pred ccccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCC-HHHHHHHHH-HHhhcCccceeecccCCEEEeCCC
Q 013640 332 TVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLN-YEEAQRWIV-NLIRNSKLDAKIDAKSGTVIMEPT 403 (439)
Q Consensus 332 ~~~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s-~~~~E~wiv-~lI~~~rL~aKID~~~g~V~~~~~ 403 (439)
.+...+-+|++.+-+.|.-++.|+.+.|++.++++ .+++|.|++ +.|+.|=+.||||+++++|++++-
T Consensus 88 ----~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~ 157 (169)
T 3chm_A 88 ----SPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFA 157 (169)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEee
Confidence 27888999999999999999999999999999999 999999999 999999999999999999998753
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.01 E-value=0.043 Score=51.91 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCC-HHHHHHHHHH
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLN-YEEAQRWIVN 380 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s-~~~~E~wiv~ 380 (439)
...+-|+...|..+....++.|++|+++.+++.||++ +++++.++..
T Consensus 167 ~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 167 YFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4668899999999999999999999999999999994 6778887776
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.83 E-value=0.022 Score=44.80 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=47.7
Q ss_pred HHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEe
Q 013640 347 IFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIM 400 (439)
Q Consensus 347 ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~ 400 (439)
-|..|++.+|.|.|+.||..||++.+++-.-|-.|..+|+|.+-||-...-|-+
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyI 64 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYI 64 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEEC
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEe
Confidence 357899999999999999999999999999999999999999999975444433
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.42 E-value=1.1 Score=38.09 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
....+.+|..++..|+|++|.+++.....+.++. ..++.+.-.+-...++|+.|.+...++...-.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 4467899999999999999999999988865542 34444444455567899999888887765443
No 14
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.17 E-value=1.6 Score=38.65 Aligned_cols=81 Identities=16% Similarity=0.015 Sum_probs=60.6
Q ss_pred HHHhcCC-ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 013640 117 LHDRYQI-GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALC-----TNSERRLSALWGKMAAEILMQNWDIALEELNQ 190 (439)
Q Consensus 117 l~~~~g~-t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~-----~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~k 190 (439)
+++..+- .+....++..+|..++..|+|+.|.+++....... .+......++...-.+-...++++.|.+...+
T Consensus 31 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 31 LEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344433 37788899999999999999999999999888775 22233445555555555667899999999999
Q ss_pred HHHHhcC
Q 013640 191 LKEKVDD 197 (439)
Q Consensus 191 lke~id~ 197 (439)
+-++.++
T Consensus 111 al~~~~~ 117 (283)
T 3edt_B 111 ALEIREK 117 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 15
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.61 E-value=1.3 Score=40.02 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
+++..+++|..|..+++.|+|+.|.+.+..+....+++.....+++..=.+-...++|+.|.+.+.++-+....
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 55567799999999999999999999999998877766656777777777778889999999999888776543
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.54 E-value=1.9 Score=38.17 Aligned_cols=76 Identities=13% Similarity=-0.029 Sum_probs=53.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
+.+++-....++...+++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+.+.++-+
T Consensus 58 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 58 VPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34444333455667899999999999999999999999888765432 23333333445567899999888777644
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.46 E-value=0.26 Score=40.73 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
|.|+.-+++...|..+++.|+|+.|.+.+.....+.+.. ..++..+=.+-..+++|+.|.+...++-++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999888765432 333334444455678999999998887654
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.32 E-value=2.4 Score=36.86 Aligned_cols=181 Identities=8% Similarity=0.089 Sum_probs=98.9
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
.+++-....++....++.+|..++..|+|+.|.+++.......++ ...+....-.+-...++++.|.+.+.++-+..
T Consensus 45 ~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 45 AFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121 (243)
T ss_dssp THHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344444456666789999999999999999999999988876543 23444444445556789999999888887654
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHh--hchhHHHHHHHHHHHhcccccchHHH
Q 013640 196 DDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQT--NAPHLLRYLATAFIVNKRRRPQFKDF 273 (439)
Q Consensus 196 d~~~~~~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt--~~p~lLrYlvva~il~~~r~~~l~~i 273 (439)
.. ++. .|.. .+. .++... ..+.-++.|. .+++. ..+.+...++.+..-..+-...+..+
T Consensus 122 ~~-----~~~------~~~~-~a~-~~~~~~-~~~~A~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 122 ME-----NGD------LFYM-LGT-VLVKLE-QPKLALPYLQ-----RAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp CC-----SHH------HHHH-HHH-HHHHTS-CHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CC-----CHH------HHHH-HHH-HHHHhc-cHHHHHHHHH-----HHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33 121 1111 011 122211 1222222222 11111 12222222222222222222333334
Q ss_pred HHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCc
Q 013640 274 IKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDP 319 (439)
Q Consensus 274 ~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~ 319 (439)
-+++... +...+....+-.+.+..-++++|.+.+..+-+.-.++.
T Consensus 183 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 183 AAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 4444442 22223466666777788899999998888877544443
No 19
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=94.25 E-value=2.4 Score=38.25 Aligned_cols=74 Identities=14% Similarity=-0.053 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc-----cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN-----SERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~-----~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.++..++++.+|..++..|+|+.|.+++.....+... ......++...-.+-...++++.|.+.+.++-++..+
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999998886542 2233444444444555678999999999888877654
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.71 E-value=3.3 Score=36.17 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
+..++++.+|..++..|+|+.|.+++....... ....+++..-.+-...++|+.|.+.+.++-++..+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 456789999999999999999999999988866 22455555556667788999999999988776554
No 21
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.65 E-value=0.79 Score=36.23 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
..++++.+|..++..|+|+.|.+++..+....++......+++..-.+-...++++.|.+.++++-+...
T Consensus 38 ~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 38 TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 3478999999999999999999999999887766554455666665666778999999998888766543
No 22
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.49 E-value=0.62 Score=37.18 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=59.2
Q ss_pred HHHHHhcCC---ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 115 QMLHDRYQI---GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 115 ~~l~~~~g~---t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
..+++-..+ .|+...+++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+.+.++
T Consensus 11 ~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 11 PYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555 58888999999999999999999999999988876554 333444444455678999999988887
Q ss_pred HHHhc
Q 013640 192 KEKVD 196 (439)
Q Consensus 192 ke~id 196 (439)
-+.-.
T Consensus 88 l~~~p 92 (117)
T 3k9i_A 88 IAETS 92 (117)
T ss_dssp HHHHC
T ss_pred HHhCC
Confidence 66543
No 23
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.31 E-value=0.53 Score=41.94 Aligned_cols=89 Identities=10% Similarity=0.099 Sum_probs=53.7
Q ss_pred CChhHHHHHHHHHHHHHH----HHHHHHHHHHHhhCChhHHHHhhhcchhccHHHHHHhcCCC-h-hHHHHHHHHHHHHH
Q 013640 66 DVPQDMVERRVEVVARLK----ALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIG-P-DQIEALYQYAKFQF 139 (439)
Q Consensus 66 ~~p~e~~~k~~ev~~~l~----~l~~~~~~~~~~~~~~e~~~~l~~~dk~~n~~~l~~~~g~t-~-e~~~al~~~ak~~y 139 (439)
..|++++.-|++..++++ ..+.+.+-...+...+... |-..-+..|++-+.-+ | ..+|++|-+|-.+|
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~------~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYND------DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 82 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHH------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence 346677777777665533 1222222222233222000 1112233444444434 5 67999999999999
Q ss_pred hcCChhhHHHHHHHHHhhccc
Q 013640 140 ECGNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 140 ~~Gdy~~A~~~L~~~~~~~~~ 160 (439)
+.|||++|.+++..+...-++
T Consensus 83 kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTT
T ss_pred HccCHHHHHHHHHHHHhcCCC
Confidence 999999999999998886554
No 24
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.17 E-value=0.47 Score=40.15 Aligned_cols=77 Identities=18% Similarity=0.098 Sum_probs=56.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+.+++.....++.-.+.+.+|++|++.|+|+.|.+++..+..+.++. ..+....=.+-...++++.|.+...++-++
T Consensus 18 ~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 18 ASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 44455555667777788999999999999999999999988876543 223333333444578999999888877654
No 25
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.11 E-value=0.63 Score=36.73 Aligned_cols=79 Identities=11% Similarity=-0.089 Sum_probs=56.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
.+++-....|+...+++.+|..++..|+|+.|.+++.......++. ..+....=.+-...++++.|.+.+.++-++-
T Consensus 7 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3444445566667899999999999999999999999888865543 2222222233445789999999888887665
Q ss_pred cC
Q 013640 196 DD 197 (439)
Q Consensus 196 d~ 197 (439)
..
T Consensus 84 ~~ 85 (115)
T 2kat_A 84 QS 85 (115)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 26
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.92 E-value=0.85 Score=38.54 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=58.0
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 117 LHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 117 l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+++-.++.|+..++++.+|..++..|+|+.|.+.+.......++. ..+.++.=.+-...++|+.|.+...++-++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456667899999999999999999999999999998887765432 233333334555678999999988887664
No 27
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.92 E-value=6.6 Score=39.51 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..++....++.+|..++++|++++|.+++.......+.. .........+-...++++.|.+.+.++.+.
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---GPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345567788899999999999999999998887754432 223333334444578999998888877554
No 28
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.92 E-value=0.15 Score=40.41 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 346 FIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 346 ~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
.....+++-+.+|++..||+.||||++-+.+.|..|...|+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3456788899999999999999999999999999999999874
No 29
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.91 E-value=0.35 Score=37.71 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchh----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR----LSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k----~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.++....++.+|..++..|+|+.|.+++.......+..+.. ..+++..-.+-...++++.|.+.+.++.+.
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44456788999999999999999999999888876543211 344444444555678999999888877664
No 30
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.88 E-value=0.35 Score=38.41 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
++++..|..+++.|+|+.|.+.+..+....++......+++..-.+-...++|+.|.+...++-+...
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 36789999999999999999999998887766554456666666666778999999998888766543
No 31
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=92.81 E-value=5.2 Score=35.94 Aligned_cols=74 Identities=16% Similarity=0.030 Sum_probs=57.6
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc-----ccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT-----NSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~-----~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+....+++.+|..++..|+|+.|.+++........ +......++...-.+-...++++.|.+.+.++-++..+
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999988877652 22334555555555666688999999999888877643
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=92.75 E-value=1.9 Score=38.17 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=55.7
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
.+++-....++....++.+|..++..|+|+.|.+++.......++ ....++....+....++++.|.+.++++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 344333334455678889999999999999999988887765443 23455666666667788999988888887764
Q ss_pred cC
Q 013640 196 DD 197 (439)
Q Consensus 196 d~ 197 (439)
..
T Consensus 240 p~ 241 (252)
T 2ho1_A 240 PG 241 (252)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.66 E-value=3.2 Score=38.05 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=50.6
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
..|+..++++.+|..++..|+|+.|.+.+.......++.. .++...-.+-...++++.|.+.+.++-+
T Consensus 32 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 32 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT---AARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 3555567999999999999999999999999888755432 3444444455567899999887776644
No 34
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.57 E-value=5.9 Score=35.94 Aligned_cols=79 Identities=11% Similarity=-0.069 Sum_probs=58.1
Q ss_pred cHHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 013640 113 NLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLK 192 (439)
Q Consensus 113 n~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klk 192 (439)
-...+++-....++..++++.+|..+...|+|+.|.+++.......++.. ...+..-.+-...++++.|.+.+.++-
T Consensus 110 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH---LPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp HHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS---HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44566777777788888999999999999999999999998888765432 222223334455788999988877765
Q ss_pred HH
Q 013640 193 EK 194 (439)
Q Consensus 193 e~ 194 (439)
+.
T Consensus 187 ~~ 188 (330)
T 3hym_B 187 SI 188 (330)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 35
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.54 E-value=1.1 Score=36.59 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=57.7
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 117 LHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 117 l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
+++-..+.++...+++.+|..++..|+|+.|.+++.......++.. ..-..++....-+-.++++.|.+...+..++.+
T Consensus 70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3333334555677899999999999999999999999888765432 223334555445556888899998888888876
Q ss_pred C
Q 013640 197 D 197 (439)
Q Consensus 197 ~ 197 (439)
+
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 5
No 36
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=92.43 E-value=0.55 Score=36.80 Aligned_cols=70 Identities=14% Similarity=0.045 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
|+...+++.+|..++..|+|+.|.+++.......++.. .+.+..=.+-...++|+.|.+.++++-++-.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV---GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 44567899999999999999999999999888765432 23333333445578999999998888776544
No 37
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=92.41 E-value=0.34 Score=36.75 Aligned_cols=68 Identities=15% Similarity=0.013 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhh-cCHHHHHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILM-QNWDIALEELNQLKE 193 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~-~~w~~a~~~l~klke 193 (439)
++...+++.+|..++..|+|+.|.+++.......+. .....++...-.+-... ++++.|.+.+.++-+
T Consensus 37 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 344568899999999999999999999988876544 11344555555566677 899999887776643
No 38
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.39 E-value=2.4 Score=32.56 Aligned_cols=66 Identities=24% Similarity=0.304 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
+......+.+|..++..|+|+.|.+++.......+.. ...++..-.+-...++++.|.+.+.++-+
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 3445678889999999999999999998887765433 23334444445567888888887776644
No 39
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.33 E-value=0.36 Score=38.74 Aligned_cols=72 Identities=14% Similarity=0.017 Sum_probs=53.9
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
..++...+++.+|..++..|+|+.|.+.+.......++. ..+++..-.+-...++++.|.+.+.++-++-..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 38 RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 345556789999999999999999999998888765442 333444444455678999999999888776554
No 40
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=92.23 E-value=2.4 Score=34.70 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
.+++-....++....++.+|..++..|+++.|.+++.......++. ..++...-.+-...++++.|.+.+.++.+.-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3333333344556788889999999999999999998887765433 3344444445556788999988888877665
Q ss_pred cC
Q 013640 196 DD 197 (439)
Q Consensus 196 d~ 197 (439)
..
T Consensus 175 ~~ 176 (186)
T 3as5_A 175 EG 176 (186)
T ss_dssp HC
T ss_pred CC
Confidence 44
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.17 E-value=3.6 Score=37.37 Aligned_cols=70 Identities=19% Similarity=0.032 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
.++...+++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+.+.++-+.-.
T Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 120 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD---IAVHAALAVSHTNEHNANAALASLRAWLLSQP 120 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45556788999999999999999999999988875443 23333444444567899999998888766533
No 42
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.11 E-value=0.91 Score=37.49 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=56.9
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.+++-..++|+..++++.+|..++..|+|+.|.+++..+....++. ....++.=.+-...++++.|.+...++-++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455667789999999999999999999999999998887765432 233344434455678999999988888664
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=92.07 E-value=5.8 Score=38.18 Aligned_cols=67 Identities=18% Similarity=0.142 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
.|+...+++.+|..++..|+|+.|.+.+.......++. ..++...-.+-...++++.|.+.+.++-+
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45557789999999999999999999999888765443 33444444455567889999887776644
No 44
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.94 E-value=1.4 Score=35.26 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
...++.+|..++..|+|+.|.+++.......++. ..+++..-.+-...++++.|.+.+.++-++-
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7788999999999999999999998887765432 3444444445566789999988888876653
No 45
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.93 E-value=0.84 Score=39.44 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=58.8
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHHh
Q 013640 117 LHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMA-AEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 117 l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la-~eIl~~~w~~a~~~l~klke~i 195 (439)
+++-.+++|+..++++.+|..+++.|+|+.|.+++.....+-++. ...|..++ +-...++++.|.+...++-++-
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 456678899999999999999999999999999999888865543 22344443 3344689999999888886643
Q ss_pred c
Q 013640 196 D 196 (439)
Q Consensus 196 d 196 (439)
.
T Consensus 101 P 101 (151)
T 3gyz_A 101 K 101 (151)
T ss_dssp S
T ss_pred C
Confidence 3
No 46
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.74 Score=36.73 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=54.9
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 118 HDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 118 ~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
++-..+.|+...+++.+|..++..|+|+.|.+.+.....+.++. ..+++..=.+-...++++.|.+.+.++-++-
T Consensus 28 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 28 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 33333455566789999999999999999999998888765443 3344444445566789999999988887765
No 47
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.85 E-value=2 Score=37.08 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=40.4
Q ss_pred cHHHHHHhcCCC-h-hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 113 NLQMLHDRYQIG-P-DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 113 n~~~l~~~~g~t-~-e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
-+..|++-+.-+ | ..++.+|-+|-.+|+.|||++|..++..+...-++.
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 456677666654 4 789999999999999999999999999998866543
No 48
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.84 E-value=1.1 Score=34.97 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=54.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+++-....++..+.++.+|..++..|+|+.|.+++.......++. ..+++..-.+-...++++.|.+.+.++-+.
T Consensus 37 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 37 KHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34444445566667889999999999999999999998888765432 223333333445568899998888877664
No 49
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.82 E-value=0.58 Score=37.57 Aligned_cols=71 Identities=24% Similarity=0.357 Sum_probs=54.7
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.+...+.++..|..+++.|+|+.|.+++.......++......++...-.+-+..++|+.|.+...++-+.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34557789999999999999999999999988876544333445555555566678999999988887665
No 50
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=91.69 E-value=0.78 Score=41.07 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
+++|..|..+++.|+|++|.+.+..+....+++.....+++..-.+-...++|+.|.+...++-+...+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 478999999999999999999999998876665555566777667777789999999888887665544
No 51
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.66 E-value=0.99 Score=37.10 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=56.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..++-..+.|....+++.+|..++..|+|+.|.+.+.....+-++. ..++..+=.+-...++++.|.+...++-++
T Consensus 35 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 35 HYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF---IKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444444567778899999999999999999999998888764432 334444444555678999999998888664
No 52
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=91.66 E-value=1 Score=35.94 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+..++++..|..++..|+|+.|.+++.......++. ..++...=.+-...++|+.|.+...++-++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345788999999999999999999999988876543 244444444556678999999998888664
No 53
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.64 E-value=0.88 Score=35.20 Aligned_cols=68 Identities=16% Similarity=0.007 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.++....++.+|..++..|+|+.|.+++.......++. ..+++..-.+-...++|+.|.+.+.++-+.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 44456788999999999999999999999888765433 233444444556678999999888887665
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=91.57 E-value=5.8 Score=33.69 Aligned_cols=68 Identities=13% Similarity=-0.058 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+++..+.++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+...++-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSI 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45667788888999999999999999888877765543 223333333445567888888887777654
No 55
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.48 E-value=0.21 Score=40.47 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=38.6
Q ss_pred HHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 347 IFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 347 ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
....|++-+.+|++..||+.||||+.-+.+.|..|...|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 345678889999999999999999999999999999999886
No 56
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.32 E-value=1.3 Score=36.28 Aligned_cols=69 Identities=10% Similarity=0.003 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
|.-.+...+|..+|+.|+|+.|.+++.....+.++. ..++..+=.+-+..++|+.|.+...++-++-.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence 445577789999999999999999999988876543 333333444455578999999999888765443
No 57
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.30 E-value=1.3 Score=33.53 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..++++..|..++..|+|+.|.+.+.......++. ..+++..-.+-...++|+.|.+.+.++-+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 45678888999999999999999888887765432 334444444555678888888877776554
No 58
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.26 E-value=8.2 Score=34.88 Aligned_cols=173 Identities=10% Similarity=0.025 Sum_probs=87.6
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHH----------HH--HHhhcCHHHHHHHHHH
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKM----------AA--EILMQNWDIALEELNQ 190 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~l----------a~--eIl~~~w~~a~~~l~k 190 (439)
..++..++++.+|..+...|+++.|.+++.......+........+...+ +. -+..++++.|.+.+.+
T Consensus 84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 35556778999999999999999999999998887655433222221111 22 3445678888877777
Q ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHh--hchhHHHHHHHHHHHhcc-c-
Q 013640 191 LKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQT--NAPHLLRYLATAFIVNKR-R- 266 (439)
Q Consensus 191 lke~id~~~~~~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt--~~p~lLrYlvva~il~~~-r- 266 (439)
+-+.-.. ++. .+....+ .++... ..+.-++.|. .+++. ..|.. |..++.+.... +
T Consensus 164 ~~~~~~~-----~~~-~~~~la~-------~~~~~~-~~~~A~~~~~-----~~~~~~~~~~~~--~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 164 ALEMNPN-----DAQ-LHASLGV-------LYNLSN-NYDSAAANLR-----RAVELRPDDAQL--WNKLGATLANGNRP 222 (327)
T ss_dssp HHHHSTT-----CHH-HHHHHHH-------HHHHTT-CHHHHHHHHH-----HHHHHCTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHhhCCC-----CHH-HHHHHHH-------HHHHhc-cHHHHHHHHH-----HHHHhCCCcHHH--HHHHHHHHHHcCCH
Confidence 6554322 221 1111111 111111 1122222222 11111 11222 22233333221 1
Q ss_pred ccchHHHHHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcC
Q 013640 267 RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILN 317 (439)
Q Consensus 267 ~~~l~~i~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~ 317 (439)
...+..+-+++... +...+....+-.+.+..-++++|.+.+..+-+.-..
T Consensus 223 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 223 QEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 22233333444432 222233566666777888999999888887765444
No 59
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.17 E-value=0.97 Score=35.36 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
++....+++.+|..+++.|+|+.|.+++.......+.. ..++...-.+-...++|+.|.+.+.++-+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56778899999999999999999999999887754432 334444444445678999999988887664
No 60
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.10 E-value=1.7 Score=31.85 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.....++.+|..++..|+|+.|.+++.......++. ...++..-.+-+..++++.|.+.+.++-++
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456788999999999999999999999888765543 233344444555678999999888887664
No 61
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.98 E-value=4.2 Score=35.45 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=59.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+++.....++....++.+|..++..|+|+.|.+++.......+.. ..++...-.+-+..++|+.|.+.+.++-+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 44555555788889999999999999999999999999988866543 234444444556678999999988887654
No 62
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=90.91 E-value=10 Score=35.25 Aligned_cols=182 Identities=12% Similarity=0.019 Sum_probs=91.3
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHH------------HHHHHHHHhhcCHHH
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSAL------------WGKMAAEILMQNWDI 183 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~l------------wg~la~eIl~~~w~~ 183 (439)
.+++-..+.++..++++.+|..+...|+++.|.+.+.......++.......+ +..+++-...++++.
T Consensus 120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (368)
T 1fch_A 120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 199 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHH
Confidence 33443344566677888899999999999999998888887765543222111 111222225567788
Q ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHH-HhcCccchHHHHHHhccccchhHHHh--hchhHHHHHHHHH
Q 013640 184 ALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFI-FFNHDNGRTLIIDLFNQDKYLNAIQT--NAPHLLRYLATAF 260 (439)
Q Consensus 184 a~~~l~klke~id~~~~~~~~l~~l~~R~WllHwsLf~-~fn~~~~~~~l~d~F~~~~yl~~Iqt--~~p~lLrYlvva~ 260 (439)
|.+.+.++-+.-.. ..++. .+. .+-. ++... ..+.-++.|. .++.. ..|..+..+ +.
T Consensus 200 A~~~~~~a~~~~p~---~~~~~-~~~--------~l~~~~~~~g-~~~~A~~~~~-----~al~~~~~~~~~~~~l--~~ 259 (368)
T 1fch_A 200 VKELFLAAVRLDPT---SIDPD-VQC--------GLGVLFNLSG-EYDKAVDCFT-----AALSVRPNDYLLWNKL--GA 259 (368)
T ss_dssp HHHHHHHHHHHSTT---SCCHH-HHH--------HHHHHHHHTT-CHHHHHHHHH-----HHHHHCTTCHHHHHHH--HH
T ss_pred HHHHHHHHHHhCcC---cccHH-HHH--------HHHHHHHHcC-CHHHHHHHHH-----HHHHhCcCCHHHHHHH--HH
Confidence 87777766554322 11221 111 1111 22211 1222222222 11111 122333333 33
Q ss_pred HHhc-cc-ccchHHHHHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCC
Q 013640 261 IVNK-RR-RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILND 318 (439)
Q Consensus 261 il~~-~r-~~~l~~i~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D 318 (439)
+... .+ ...+..+-+++... +........+-.+.+..-++++|...+..+-+.-.++
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3322 12 22233333344332 2222346667777778889999999888877755443
No 63
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=90.76 E-value=1.3 Score=33.73 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..++++.+|..++..|+|+.|.+.+.......++. ..++...=.+-...++|+.|.+...++-++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 35688999999999999999999999988875543 233344444556678999998888877553
No 64
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=90.74 E-value=0.79 Score=41.60 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHh--------hcCHHHHHHHHHHHHHHhcC
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEIL--------MQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl--------~~~w~~a~~~l~klke~id~ 197 (439)
...++++.+|..++..|+|+.|.+.+..+....+++.....+++..-.+-.. .++++.|.+.+.++-+....
T Consensus 50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 3478999999999999999999999999999877655555555554444444 78899999988888766544
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=90.70 E-value=3.1 Score=35.11 Aligned_cols=76 Identities=13% Similarity=-0.005 Sum_probs=53.8
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
+.+++-..+.++..++...+|..++..|+|++|.+.+.......+.. ..+....=.+-...++++.|.+..+++-+
T Consensus 94 ~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 94 DALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF---IRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh---hhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444566777899999999999999999999999888765543 22333333334456899999888877643
No 66
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=90.70 E-value=0.97 Score=38.02 Aligned_cols=77 Identities=17% Similarity=-0.004 Sum_probs=54.7
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 118 HDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 118 ~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
++-..+.++....++.+|..++..|+|+.|.+++.....+.++. ..+++..=.+-...++++.|.+.+.++-++-..
T Consensus 35 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 35 TQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33333455567788999999999999999999988888765442 334444444445578899999888888776544
No 67
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=90.64 E-value=6.7 Score=36.79 Aligned_cols=75 Identities=21% Similarity=0.058 Sum_probs=54.4
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 118 HDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 118 ~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
++-....|+..++++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+.+.++-++-
T Consensus 89 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 163 (365)
T 4eqf_A 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN---LKALMALAVSYTNTSHQQDACEALKNWIKQN 163 (365)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 33333456667789999999999999999999999988875543 3333444444556789999998888876643
No 68
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=90.52 E-value=7.5 Score=34.41 Aligned_cols=77 Identities=17% Similarity=0.118 Sum_probs=54.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhh-----------cCHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILM-----------QNWDI 183 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~-----------~~w~~ 183 (439)
..+++-....|+..++++.+|..+...|+++.|.+.+.....+.++... .-...|.+ -... ++++.
T Consensus 26 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~-a~~~lg~~--~~~~~~~~~~~~~~~g~~~~ 102 (217)
T 2pl2_A 26 TLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG-GYMVLSEA--YVALYRQAEDRERGKGYLEQ 102 (217)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH--HHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHH--HHHhhhhhhhhcccccCHHH
Confidence 4555666678888899999999999999999999999998887665321 11122222 2223 67888
Q ss_pred HHHHHHHHHHH
Q 013640 184 ALEELNQLKEK 194 (439)
Q Consensus 184 a~~~l~klke~ 194 (439)
|...+.++-++
T Consensus 103 A~~~~~~al~~ 113 (217)
T 2pl2_A 103 ALSVLKDAERV 113 (217)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88777776554
No 69
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.51 E-value=1.4 Score=34.47 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhhhc---cccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 342 NARLFIFETYCRIHQ---RIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 342 ~aR~~ife~ycriy~---~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
.....|+ .+++-.. .++...||++||+|...+.+.|-+|...|.+... +...|.-..++++
T Consensus 14 ~~~~~IL-~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~-g~~~~~W~i~~~~ 77 (77)
T 1qgp_A 14 DQEQRIL-KFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVSD 77 (77)
T ss_dssp HHHHHHH-HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE-CSSSCEEEECCCC
T ss_pred HHHHHHH-HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCceEecCCC
Confidence 3334454 5677777 9999999999999999999999999999998643 4455666665553
No 70
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=90.50 E-value=0.98 Score=34.31 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
.++....++.+|..++..|+|+.|.+++.......++. ..+++..-.+-...++++.|.+.+.++-+
T Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 34 DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW---GKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44556789999999999999999999999888865432 23333333445567899999888777654
No 71
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=90.30 E-value=1.4 Score=33.60 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
++....++.+|..++..|+|+.|.+++.......++. ...++..-.+-...++++.|.+.+.++-+.
T Consensus 40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445688899999999999999999998887765432 223333333445568899998888777554
No 72
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.26 E-value=1.9 Score=33.31 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
+..+.++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++|+.|.+...++-+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 456788999999999999999999999988865442 233333333445578999999988888776543
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=90.24 E-value=7.7 Score=32.86 Aligned_cols=67 Identities=9% Similarity=-0.162 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhh-cCHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILM-QNWDIALEELNQLKE 193 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~-~~w~~a~~~l~klke 193 (439)
.++..+.++.+|..+...|+|+.|.+++.......++. ...+...-.+-... ++++.|.+.+.++-+
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 44456688999999999999999999999888765442 23334444455667 899999888877755
No 74
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=90.13 E-value=2.2 Score=32.75 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=52.5
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.+.....++.+|..++..|+|+.|.+++.......++. ..+.+..-.+-...++|+.|.+.+.++-+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 45567789999999999999999999999888765433 334444444556678999999988887664
No 75
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.01 E-value=1.4 Score=34.87 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhhhc---cccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 342 NARLFIFETYCRIHQ---RIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 342 ~aR~~ife~ycriy~---~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
.....|+ .+++-.. +++...||++||+|...+.+.|-+|..+|.+. +++...|.-....+.
T Consensus 10 ~~~~~IL-~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~-~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 10 DQEQRIL-KFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ-KEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHH-HHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EESSSSCEEEEC---
T ss_pred HHHHHHH-HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-ecCCCCCeeEEeCcH
Confidence 3344454 5666667 89999999999999999999999999999984 456666776666554
No 76
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=89.98 E-value=5.9 Score=35.16 Aligned_cols=71 Identities=8% Similarity=0.006 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.|+...+++.+|..++..|+|+.|.+++........+......++...-.+-...++++.|.+.+.++-+.
T Consensus 33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44445577888888888888888888888777733222222333333444445567888888877777654
No 77
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=89.96 E-value=0.92 Score=39.26 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=55.7
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc-------------hhHHHHHHHHHHHHhhcCHHHH
Q 013640 118 HDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-------------RRLSALWGKMAAEILMQNWDIA 184 (439)
Q Consensus 118 ~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~-------------~k~~~lwg~la~eIl~~~w~~a 184 (439)
++-..+.++...+++.+|..++..|+|+.|.+.+.......++.. ....++...-.+-...++|+.|
T Consensus 61 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 61 TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 333333455677899999999999999999999999888766433 1234444444555667899999
Q ss_pred HHHHHHHHHHh
Q 013640 185 LEELNQLKEKV 195 (439)
Q Consensus 185 ~~~l~klke~i 195 (439)
.+.+.++-++-
T Consensus 141 ~~~~~~al~~~ 151 (213)
T 1hh8_A 141 EEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHcC
Confidence 88888775543
No 78
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=89.89 E-value=2.2 Score=33.94 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=54.2
Q ss_pred cCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 121 YQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER---RLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 121 ~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~---k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+-++.....++.+|..++..|+|+.|.+++..........+. ...++...-.+-...++++.|.+.+.+..++..+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3434455678889999999999999999999888777543322 2333333334445568899999988888777665
No 79
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.68 E-value=11 Score=34.13 Aligned_cols=63 Identities=6% Similarity=-0.058 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+.++..|..++..|+|+.|.+++.......+.. ..++.....+-...++++.|...+.++-+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 85 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDL 85 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 466777888888888888888777776654432 233333344445667777777776666553
No 80
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=89.53 E-value=1.5 Score=35.03 Aligned_cols=66 Identities=15% Similarity=0.011 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
...+.++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++|+.|.+.+.++-++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 446689999999999999999999999888876543 334444444555678999999988887664
No 81
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=89.29 E-value=1.5 Score=36.82 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc---------------cchhHHHHHHHHHHHHhhcCHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN---------------SERRLSALWGKMAAEILMQNWDIALEELN 189 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~---------------~~~k~~~lwg~la~eIl~~~w~~a~~~l~ 189 (439)
.+..+++...|..++..|+|+.|.+.+......+.. ......++...-.|-+..++|+.|.....
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 346678899999999999999999999888877322 12234455555556667899999999988
Q ss_pred HHHHH
Q 013640 190 QLKEK 194 (439)
Q Consensus 190 klke~ 194 (439)
++-++
T Consensus 88 ~al~~ 92 (162)
T 3rkv_A 88 EVLKR 92 (162)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88664
No 82
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.22 E-value=2.2 Score=35.78 Aligned_cols=68 Identities=16% Similarity=0.047 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.++..+.++.+|..++..|+|+.|.+++.....+.++. ..++...=.+-+..++|+.|.+...++-++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999988876543 334444444556678999999988888664
No 83
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=88.91 E-value=3.2 Score=36.05 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=53.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+++-....++....++.+|..++..|+|+.|.+++.......++. ...+...-.+-...++++.|.+.++++.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 146 PYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH---ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 34444444445556688889999999999999999888887765432 233344444555678888888888877664
Q ss_pred hc
Q 013640 195 VD 196 (439)
Q Consensus 195 id 196 (439)
-.
T Consensus 223 ~p 224 (243)
T 2q7f_A 223 QP 224 (243)
T ss_dssp CT
T ss_pred Cc
Confidence 33
No 84
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=88.76 E-value=2.8 Score=34.16 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+....++..|..++..|+|+.|.+++.......+.. ..++...-.+-...++|+.|.+...++-++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356688999999999999999999998888765443 334444444556678999999888887665
No 85
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=88.48 E-value=8.9 Score=31.16 Aligned_cols=65 Identities=15% Similarity=-0.040 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
....++.+|..++..|+|+.|.+.+.......++ ...++...-.+-...++++.|.+.+.++-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF---DVDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4456677788888888888887777665543332 1233333333445567777777777766554
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=88.38 E-value=2.3 Score=32.64 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
++....++.+|..++..|+++.|.+++.......++. ....+..-.+-...++|+.|.+.+.++-+.
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445678889999999999999999999887765432 223333334455678899998888777654
No 87
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.31 E-value=1.1 Score=33.96 Aligned_cols=50 Identities=10% Similarity=0.125 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce
Q 013640 340 LENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA 389 (439)
Q Consensus 340 ~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a 389 (439)
+...|..|++-+.+--..++...||+.||+|...+.+.|..|...|-+..
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 44567777776655335799999999999999999999999999988643
No 88
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.21 E-value=1.9 Score=35.43 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
..|+....++.+|..++..|+|+.|.+.+.....+.++.. ..++..=.+-...++++.|.+.+.++.++-..
T Consensus 47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 47 LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP---RFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4566677899999999999999999999999888765432 33444445556678999999999988776654
No 89
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=88.21 E-value=1.4 Score=36.01 Aligned_cols=77 Identities=9% Similarity=0.121 Sum_probs=53.4
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch---hHHHHHHHH-HHHHhhcCHHHHHHHHHHH
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER---RLSALWGKM-AAEILMQNWDIALEELNQL 191 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~---k~~~lwg~l-a~eIl~~~w~~a~~~l~kl 191 (439)
+.++-..+.|+...+++.+|..|+..|+|+.|.+.+.....+.+.... .+...|..+ .+-.-.++++.|.+...+.
T Consensus 30 ~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 30 HYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444456777889999999999999999999999988877654321 222233333 2344567899998877765
Q ss_pred H
Q 013640 192 K 192 (439)
Q Consensus 192 k 192 (439)
-
T Consensus 110 l 110 (127)
T 4gcn_A 110 L 110 (127)
T ss_dssp H
T ss_pred H
Confidence 3
No 90
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=88.00 E-value=9.1 Score=33.83 Aligned_cols=76 Identities=20% Similarity=0.082 Sum_probs=56.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+++-..+.|+..++++.+|..++..|++++|.+.+.....+. + ...+.+..-.+-...++++.|.....++-++
T Consensus 105 ~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D---TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445577778899999999999999999999999888866 2 2334444444555678999998888887654
No 91
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=87.93 E-value=2.9 Score=35.43 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=58.9
Q ss_pred HhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc----hhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 119 DRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE----RRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 119 ~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~----~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+..|.++....++..+|..+...|+|+.|.+++......+...+ ....++...=.+-...++++.|.+.+.+.-++
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 57 QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455677788999999999999999999999998888754332 23444444444555678999999999888777
Q ss_pred hcC
Q 013640 195 VDD 197 (439)
Q Consensus 195 id~ 197 (439)
...
T Consensus 137 ~~~ 139 (203)
T 3gw4_A 137 AQQ 139 (203)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 92
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=87.56 E-value=18 Score=33.76 Aligned_cols=172 Identities=13% Similarity=0.175 Sum_probs=94.4
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCC
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFT 202 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~~~~~ 202 (439)
..|+....++.+|..+...|+|++|.+.+.. +....+...+..+-..+++++.|.+.++++.+.-..
T Consensus 96 ~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----- 162 (291)
T 3mkr_A 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED----- 162 (291)
T ss_dssp CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-----
Confidence 3466677899999999999999999998876 233444444445556678999999999988775221
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHhhch---hHHHHHHHHHHHhcccccchHHHHHHHhh
Q 013640 203 SPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAP---HLLRYLATAFIVNKRRRPQFKDFIKVIQQ 279 (439)
Q Consensus 203 ~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt~~p---~lLrYlvva~il~~~r~~~l~~i~~vi~q 279 (439)
++...+ ..+|. -+.......+.-++.|. .++.. +| .++.-++.+.+-.++-......+-+++..
T Consensus 163 ~~~~~l-~~a~~------~l~~~~~~~~eA~~~~~-----~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 163 ATLTQL-ATAWV------SLAAGGEKLQDAYYIFQ-----EMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp CHHHHH-HHHHH------HHHHCTTHHHHHHHHHH-----HHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHH------HHHhCchHHHHHHHHHH-----HHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222211 12232 11111112222323332 22221 22 22222322222222223334445555555
Q ss_pred hccCCcchHHHHHHHhhhcCChhH-HHHHHHHHHHHhcCCccc
Q 013640 280 EQNSYKDPITEFLACVYVNYDFDG-AQKKMKECEEVILNDPFL 321 (439)
Q Consensus 280 e~~~Y~Dpit~f~~~lY~~fdF~~-aq~~L~~~e~~i~~D~FL 321 (439)
. +...+.+.++..+....-++++ +.+.+....+.=.+|+++
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 3 2233447777777777777754 566667777666677776
No 93
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=87.43 E-value=20 Score=33.95 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHH-HHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKM-AAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~l-a~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+.....++..|..++..|+|+.|.+++.......+++......+|..+ .+-...++++.|.+...++-++..+
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999988665443333334333 4445578999999999988887765
No 94
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=87.32 E-value=2.3 Score=35.77 Aligned_cols=73 Identities=8% Similarity=-0.057 Sum_probs=55.9
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+.|...++++.+|..++..|+|+.|.+.+.....+.++. ..+++..=.+-...++++.|.+.+.++-++-..
T Consensus 49 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456667788999999999999999999999988876543 234444444556689999999999888776654
No 95
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=87.31 E-value=1 Score=33.94 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+.++.+|..++..|+|+.|.+++.......+.. ..+++..-.+-...++|+.|.+.+.++-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567889999999999999999999988865543 233333334445578999998888877554
No 96
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=87.17 E-value=15 Score=34.39 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHH-HHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKM-AAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~l-a~eIl~~~w~~a~~~l~klke~id~ 197 (439)
....+++..|..++..|+|+.|.+++.......+++......+|..+ .+-...++++.|.+...++-++..+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 34557788899999999999999988888887655433333333333 3455567888888888887777665
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=87.12 E-value=19 Score=39.09 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHHhcCCCCCC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMA-AEILMQNWDIALEELNQLKEKVDDPKSFT 202 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la-~eIl~~~w~~a~~~l~klke~id~~~~~~ 202 (439)
.|+..+++..+|..+.+.|+|++|.+++.....+-++.. ..|..++ +-...++++.|.+..+++-++-.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----- 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSNLASVLQQQGKLQEALMHYKEAIRISPT----- 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 577889999999999999999999999998888655432 2233333 233467899998888877554221
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHhhchhHHHHHHHHHHHhcc-c-ccchHHHHHHHhhh
Q 013640 203 SPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKR-R-RPQFKDFIKVIQQE 280 (439)
Q Consensus 203 ~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt~~p~lLrYlvva~il~~~-r-~~~l~~i~~vi~qe 280 (439)
++ ..+. .|-..+......+.-++.|. .+++..-.+.--|.-++.+.... + .+.+...-+++...
T Consensus 76 ~~-~a~~--------nLg~~l~~~g~~~~A~~~~~-----kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 76 FA-DAYS--------NMGNTLKEMQDVQGALQCYT-----RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp CH-HHHH--------HHHHHHHHTTCHHHHHHHHH-----HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CH-HHHH--------HHHHHHHHcCCHHHHHHHHH-----HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11 1111 11111111112222223322 22222111111233334444332 1 23334444444443
Q ss_pred ccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHh
Q 013640 281 QNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVI 315 (439)
Q Consensus 281 ~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i 315 (439)
+.+.+...++-.++....++++|.+.+.++.+..
T Consensus 142 -P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 142 -PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp -SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred -CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 3344557888888888999999998887766643
No 98
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=86.86 E-value=18 Score=32.89 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHH------------HHHHHHHHhhcCHHHHHHHHHH
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSAL------------WGKMAAEILMQNWDIALEELNQ 190 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~l------------wg~la~eIl~~~w~~a~~~l~k 190 (439)
..|+..++++.+|..++..|+|+.|.+.+.......++.+...... +..-.+-...++++.|.+.+.+
T Consensus 66 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3555567899999999999999999999998887665211111111 2223455567889999888887
Q ss_pred HHHH
Q 013640 191 LKEK 194 (439)
Q Consensus 191 lke~ 194 (439)
+-+.
T Consensus 146 ~~~~ 149 (359)
T 3ieg_A 146 ILEV 149 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 99
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=86.83 E-value=3 Score=36.62 Aligned_cols=78 Identities=8% Similarity=-0.129 Sum_probs=56.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchh---H-HHHHHHHHHHHhhcCHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR---L-SALWGKMAAEILMQNWDIALEELNQ 190 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k---~-~~lwg~la~eIl~~~w~~a~~~l~k 190 (439)
..+++-....|+..++++.+|..++..|+|+.|.+.+.......++...- + .++...=.+-...++++.|.+...+
T Consensus 63 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 63 DYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 45555556678888999999999999999999999999998877654311 1 2233333344556889888877776
Q ss_pred HH
Q 013640 191 LK 192 (439)
Q Consensus 191 lk 192 (439)
+-
T Consensus 143 al 144 (228)
T 4i17_A 143 AT 144 (228)
T ss_dssp HT
T ss_pred HH
Confidence 63
No 100
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=86.79 E-value=2.9 Score=33.19 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER---RLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~---k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.....+++.+|..++..|+|+.|.+++..........+. ...++...-.+-...++++.|.+...++-++...
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345668899999999999999999999998887654322 2334444444455678999999999998888775
No 101
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=86.47 E-value=25 Score=34.10 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT 159 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~ 159 (439)
...|+..++++.+|..++..|+|+.|.+.+.......+
T Consensus 67 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 67 ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104 (514)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred ccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34566678999999999999999999999988877654
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=86.45 E-value=3.5 Score=36.32 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=44.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 134 YAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 134 ~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+|..++..|+|+.|.+.+.....+.++. ..++...=.+-...++++.|.+...++-++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999988876543 334444444455678999999988888664
No 103
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=86.39 E-value=1.6 Score=35.50 Aligned_cols=73 Identities=19% Similarity=0.024 Sum_probs=50.9
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 013640 117 LHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLK 192 (439)
Q Consensus 117 l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klk 192 (439)
+++-....|+..++++.+|..+...|+++.|.+.+.....+.++.. .+++..-.+-...++++.|.+.+.++-
T Consensus 40 ~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 40 FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI---AVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344666778999999999999999999999998888765432 333443344445677888877666553
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=86.31 E-value=17 Score=32.06 Aligned_cols=65 Identities=15% Similarity=0.003 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 130 ALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 130 al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+.+|.+++..|+|..|...+..+....+++...-.++..+-.+-.-.++++.|.+.++++...
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 34788999999999999999999999988776655567777777777789999999888877653
No 105
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=86.27 E-value=3.7 Score=34.26 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
.+.....++.+|..++..|+|+.|.+.+.....+.++ ...+++.+=.+-...++|+.|.+.+.++-++-
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4556678899999999999999999999888876443 34455555555666789999999988887653
No 106
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=86.19 E-value=0.54 Score=44.45 Aligned_cols=59 Identities=27% Similarity=0.365 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHc-CCCHHHHHHHHHHHhhcCccceeecccCCEEEe
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKL-NLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIM 400 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l-~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~ 400 (439)
.+..|.+.+|..|....-..|++|+++.+|+-| |+|++++++|+... .=++| .+|+|..
T Consensus 130 ~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~------GW~vd-~~g~I~~ 189 (226)
T 1rz4_A 130 GITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY------GWSAD-ESGQIFI 189 (226)
T ss_dssp TSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH------TCEEC-C--CEEC
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC------CCEEC-CCccEEe
Confidence 345688999999999999999999999999999 59999999999873 23555 4566654
No 107
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=86.14 E-value=21 Score=32.99 Aligned_cols=79 Identities=18% Similarity=0.009 Sum_probs=58.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+++-....|+...+++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+.+.++-+.
T Consensus 85 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 85 LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN---QTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444445566777899999999999999999999999988876542 334444444555678999999988887665
Q ss_pred hc
Q 013640 195 VD 196 (439)
Q Consensus 195 id 196 (439)
..
T Consensus 162 ~~ 163 (368)
T 1fch_A 162 TP 163 (368)
T ss_dssp ST
T ss_pred Cc
Confidence 43
No 108
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=85.97 E-value=2.2 Score=37.87 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=54.5
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 117 LHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 117 l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
+++-..+.++..++++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+.+.++-++-
T Consensus 66 ~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 66 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 333333455566788999999999999999999998888865543 3444444455566789999988888886643
No 109
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=85.95 E-value=18 Score=35.03 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=23.0
Q ss_pred hHHHHHHHhhhcCChhHHHHHHHHHHHHhcCC
Q 013640 287 PITEFLACVYVNYDFDGAQKKMKECEEVILND 318 (439)
Q Consensus 287 pit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D 318 (439)
....+-.+....-++++|...+..+-+.-.++
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 35566677778889999988888877754443
No 110
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=85.85 E-value=17 Score=32.43 Aligned_cols=77 Identities=10% Similarity=-0.035 Sum_probs=53.2
Q ss_pred cCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchh---HHHHHHHHHHHHhhcC-----------------
Q 013640 121 YQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR---LSALWGKMAAEILMQN----------------- 180 (439)
Q Consensus 121 ~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k---~~~lwg~la~eIl~~~----------------- 180 (439)
.+-++....++..+|..++..|+|+.|.+++..........+.. ..++...-.+-...++
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 34466678899999999999999999999999988776543222 2233333333344566
Q ss_pred ---HHHHHHHHHHHHHHhcC
Q 013640 181 ---WDIALEELNQLKEKVDD 197 (439)
Q Consensus 181 ---w~~a~~~l~klke~id~ 197 (439)
++.|.+...+.-++...
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77787777776666554
No 111
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=85.75 E-value=4.3 Score=35.72 Aligned_cols=74 Identities=11% Similarity=-0.076 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc-----cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN-----SERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~-----~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+....++..+|..++..|+|+.|.+++......... ......++...-.+-...++|+.|.+.+.++-++..+
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999888776422 2333444444444556678999999999998887654
No 112
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=85.72 E-value=3.3 Score=45.15 Aligned_cols=81 Identities=21% Similarity=0.174 Sum_probs=63.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 114 LQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 114 ~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
++.+++-..+.++..++++.+|..+.+.|+|++|.+++.....+-++. ..++...-.+-...++|+.|.+..+++.+
T Consensus 97 ~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 97 LQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 345556666788888999999999999999999999999988876543 34444555555667899999999998887
Q ss_pred HhcC
Q 013640 194 KVDD 197 (439)
Q Consensus 194 ~id~ 197 (439)
+...
T Consensus 174 l~~~ 177 (723)
T 4gyw_A 174 IVAD 177 (723)
T ss_dssp HHHH
T ss_pred hChh
Confidence 7653
No 113
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.70 E-value=0.97 Score=39.51 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHHHHhcCCCh-hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 114 LQMLHDRYQIGP-DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 114 ~~~l~~~~g~t~-e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
+..|++-+.-++ ..+|.+|-+|-=+|+.|||++|..++..+...-++.
T Consensus 63 I~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 63 VKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 344555444345 689999999999999999999999999988866554
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=85.52 E-value=3.2 Score=35.69 Aligned_cols=78 Identities=12% Similarity=0.007 Sum_probs=58.3
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
.+++-..+.|+..++++.+|..++..|+|++|.+.+.....+.++.. .+++..=.|-...++++.|.+...++-++-
T Consensus 58 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~---~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 58 FFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY---TPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33444445677788999999999999999999999999988776543 334444445556789999999988887654
Q ss_pred c
Q 013640 196 D 196 (439)
Q Consensus 196 d 196 (439)
.
T Consensus 135 ~ 135 (151)
T 3gyz_A 135 N 135 (151)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=84.91 E-value=7.3 Score=34.43 Aligned_cols=78 Identities=21% Similarity=0.131 Sum_probs=55.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
..+++-..+.++...+++.+|..++..|+|+.|.+++.......++.. ...+|..+ ....++++.|.+.+.++-..
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~--~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--FRSLWLYL--AEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH--HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--HHHHHHHH--HHHhcCHHHHHHHHHHHHhc
Confidence 344444444556678999999999999999999999999988765543 22233332 25568899998888776654
Q ss_pred hc
Q 013640 195 VD 196 (439)
Q Consensus 195 id 196 (439)
..
T Consensus 174 ~~ 175 (275)
T 1xnf_A 174 SD 175 (275)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=84.80 E-value=5.3 Score=34.44 Aligned_cols=70 Identities=7% Similarity=-0.006 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch-------------hHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER-------------RLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~-------------k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
++..+.+...|..++..|+|+.|.+++.......+.... ...++...-.+-+..++|+.|.+...++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345668899999999999999999999998887654320 1234444444555678999999998888
Q ss_pred HHH
Q 013640 192 KEK 194 (439)
Q Consensus 192 ke~ 194 (439)
-++
T Consensus 115 l~~ 117 (198)
T 2fbn_A 115 LKI 117 (198)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 117
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=84.61 E-value=29 Score=33.19 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=52.8
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc---hhHH---------HHHHHHHHHHhhcCHHHH
Q 013640 117 LHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE---RRLS---------ALWGKMAAEILMQNWDIA 184 (439)
Q Consensus 117 l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~---~k~~---------~lwg~la~eIl~~~w~~a 184 (439)
+++-....|+...+++.+|..+...|+++.|.+++.......++.. .... ..+..-.+-...++|+.|
T Consensus 83 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 83 LTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3333334556678999999999999999999999998887655432 1111 122222234456889999
Q ss_pred HHHHHHHHHH
Q 013640 185 LEELNQLKEK 194 (439)
Q Consensus 185 ~~~l~klke~ 194 (439)
.+.+.++-+.
T Consensus 163 ~~~~~~~~~~ 172 (450)
T 2y4t_A 163 IAFLDKILEV 172 (450)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 118
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=84.58 E-value=35 Score=34.12 Aligned_cols=254 Identities=11% Similarity=0.007 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHHhC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh----CChhHHHHhhh
Q 013640 35 EQILKSKIELLNKTNMVDYAMDIHKSLY---HTEDVPQDMVERRVEVVARLKALEERAAPIVSFL----QNPNSFQDLRA 107 (439)
Q Consensus 35 ~~l~~a~~~llk~TnM~dy~~~~~~~l~---~~~~~p~e~~~k~~ev~~~l~~l~~~~~~~~~~~----~~~e~~~~l~~ 107 (439)
.++.-....+....+..+-+..+++..- |+... .-........+....++...-+-+++ .++.....+-.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD---VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT---THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 4555666667777777888888777653 32111 11112222223233333322222221 12222222211
Q ss_pred -----cchhccHHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHH
Q 013640 108 -----NDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWD 182 (439)
Q Consensus 108 -----~dk~~n~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~ 182 (439)
.+-..-.+.+++-..+.+....+++.+|..++..|++++|.+++.......+++ .........+-...++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHH
Confidence 111122233444434456667789999999999999999999999887765432 223333334445578999
Q ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHh-----hchh--HHHH
Q 013640 183 IALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQT-----NAPH--LLRY 255 (439)
Q Consensus 183 ~a~~~l~klke~id~~~~~~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt-----~~p~--lLrY 255 (439)
.|.+.+.++.+.-.. +|.. +....+ .++...+ .+.-++.|. .++.. .-|. ..-|
T Consensus 459 ~A~~~~~~~~~~~~~-----~~~~-~~~l~~-------~~~~~g~-~~~A~~~~~-----~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 459 LANEYLQSSYALFQY-----DPLL-LNELGV-------VAFNKSD-MQTAINHFQ-----NALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHCCC-----CHHH-HHHHHH-------HHHHTTC-HHHHHHHHH-----HHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHhCCC-----ChHH-HHHHHH-------HHHHhCC-HHHHHHHHH-----HHHHhhhccccchhhHHHHH
Confidence 999988888764322 3321 111111 1222221 122222222 11111 0122 2234
Q ss_pred HHHHHHHhccc--ccchHHHHHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 013640 256 LATAFIVNKRR--RPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEV 314 (439)
Q Consensus 256 lvva~il~~~r--~~~l~~i~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~ 314 (439)
..++.+..+.. ...+..+-+++... +........+..+.+..-++++|.+.+.++-+.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 44444444322 22223333333332 222234667777778888999998888777664
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=83.80 E-value=2.8 Score=35.33 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=52.7
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHH--HhhcCH--HHHHHHHHHH
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAE--ILMQNW--DIALEELNQL 191 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~e--Il~~~w--~~a~~~l~kl 191 (439)
.+++-....++..++++.+|..++..|+|+.|.+++.......++. ...|..++.- ...+++ +.|.+.+.++
T Consensus 32 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~a 107 (177)
T 2e2e_A 32 ALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKA 107 (177)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3333333355566799999999999999999999999988876543 2234444433 345777 8898888777
Q ss_pred HHH
Q 013640 192 KEK 194 (439)
Q Consensus 192 ke~ 194 (439)
-+.
T Consensus 108 l~~ 110 (177)
T 2e2e_A 108 LAL 110 (177)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 120
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=83.80 E-value=30 Score=32.81 Aligned_cols=74 Identities=7% Similarity=0.069 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch--h-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER--R-LSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~--k-~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+....++..+|..+...|+|+.|.+++..........+. . ..++...=.+-...++++.|.+.+.++-++..+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 5666778999999999999999999999998887654332 2 223333333344568999999999999888775
No 121
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.72 E-value=1.8 Score=34.07 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhh------ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 344 RLFIFETYCRIH------QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 344 R~~ife~ycriy------~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
|..-.-.|++-+ ..+++..||+.||+|+.-|.+.|..|-..|.|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 344444566666 789999999999999999999999999998773
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=83.54 E-value=8.5 Score=39.36 Aligned_cols=77 Identities=9% Similarity=0.031 Sum_probs=49.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhh---cCHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILM---QNWDIALEELNQL 191 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~---~~w~~a~~~l~kl 191 (439)
+.+++-..+.++..++++.+|..+.+.|+|++|.+++.......++. ..++...-.+-... ++++.|.+.+.++
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444444566667788888888888888888888888877765432 23344444444455 5666666666655
Q ss_pred HHH
Q 013640 192 KEK 194 (439)
Q Consensus 192 ke~ 194 (439)
-+.
T Consensus 155 l~~ 157 (568)
T 2vsy_A 155 VAQ 157 (568)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=83.45 E-value=7.8 Score=29.23 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
...++.+|..++..|+|+.|.+++.......++. ...++..-.+-...++++.|.+.+.++-+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5688999999999999999999999888765432 334444444555678999998888777554
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=83.28 E-value=4.5 Score=37.45 Aligned_cols=76 Identities=8% Similarity=-0.020 Sum_probs=56.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc--hhHHHHHHHHH-HHHhhc-CHHHHHHHHHHHHHHhcC
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE--RRLSALWGKMA-AEILMQ-NWDIALEELNQLKEKVDD 197 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~--~k~~~lwg~la-~eIl~~-~w~~a~~~l~klke~id~ 197 (439)
+-.+.....++.+|..|++.|+|+.|.+++......+...+ .....+|..++ +-...+ +++.|.+..+++-++.+.
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 55667777999999999999999999999999888775432 22333444443 334455 579999999988887775
No 125
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=83.28 E-value=5.1 Score=37.61 Aligned_cols=80 Identities=5% Similarity=0.001 Sum_probs=58.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+.+++-..+.|+...+++.+|..++..|+|+.|.+++.......++. ..++...-.+-...++++.|.+.+.++-++
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF---IRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444444456667789999999999999999999999888876543 333444444555678999999999988887
Q ss_pred hcC
Q 013640 195 VDD 197 (439)
Q Consensus 195 id~ 197 (439)
-.+
T Consensus 311 ~~~ 313 (365)
T 4eqf_A 311 QRK 313 (365)
T ss_dssp HHC
T ss_pred Ccc
Confidence 765
No 126
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.24 E-value=6.2 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhhcccc---chhHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHH
Q 013640 130 ALYQYAKFQFECGNYSGAADYLYQYRALCTNS---ERRLSALWGKMA-AEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 130 al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~---~~k~~~lwg~la-~eIl~~~w~~a~~~l~klke~ 194 (439)
..+.+|+++|+.|+|..|..++........+. +.....++..|+ |-.-.++++.|....+++-++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56899999999999999999999987765332 222333333333 444567899998888877554
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=82.80 E-value=11 Score=38.64 Aligned_cols=46 Identities=9% Similarity=-0.063 Sum_probs=27.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhc---CChhhHHHHHHHHHhhccc
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFEC---GNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~---Gdy~~A~~~L~~~~~~~~~ 160 (439)
+.+++-..+.++..++++.+|..+... |++++|.+.+.......++
T Consensus 112 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 112 AAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 344444444555556666677777776 6666666666666655443
No 128
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=82.69 E-value=4.6 Score=36.29 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=46.0
Q ss_pred cCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 121 YQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER---RLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 121 ~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~---k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+-......+++.+|..+...|+|+.|.+++..........+. ...++...-.+-...++++.|.+.+.++.++...
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3446666777777777777777777777777776666543322 2333333333444556777777776666555443
No 129
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.50 E-value=3.4 Score=36.50 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCh-hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 114 LQMLHDRYQIGP-DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 114 ~~~l~~~~g~t~-e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
+..|++-+.-.+ ..+|.+|-+|-=+|+.|||++|..++..+...-++.
T Consensus 62 I~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 62 VKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 345554443333 689999999999999999999999999998866554
No 130
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=82.23 E-value=7 Score=29.32 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 131 LYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 131 l~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.+..|..++..|+|+.|.+.+.......++...+ +++..=.+-...++|+.|.+...++-++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDE--AYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3677888888999999988888877765433211 2222223344567888888887777554
No 131
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=82.11 E-value=35 Score=32.34 Aligned_cols=65 Identities=8% Similarity=0.083 Sum_probs=49.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhhccccc--h-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 013640 134 YAKFQFECGNYSGAADYLYQYRALCTNSE--R-RLSALWGKMAAEILMQNWDIALEELNQLKEKVDDP 198 (439)
Q Consensus 134 ~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~--~-k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~ 198 (439)
.|.+++..|+|+.|.+++.....+....+ . ...++...=.+-...++++.|.+...++-++..+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999988755422 2 23333333334455789999999999999998874
No 132
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=81.91 E-value=40 Score=32.93 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEEL 188 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l 188 (439)
.|+...+++.+|..++..|+|+.|.+.+.......++ ...+++..-.+-...++++.|.+.+
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444556666666666666666666666665554332 2233333333444445555555444
No 133
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=81.79 E-value=5.5 Score=34.88 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
++++..|..++..|+|+.|.+++.......+.... .+.+..-.+-...++++.|.+...++-+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~ 70 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIK 70 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 67888888888888888888888888776642111 3344444455556788888887776643
No 134
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=81.14 E-value=6.9 Score=30.49 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=48.8
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec--ccCCEEEeCCCCchhHHHHHHhhh
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID--AKSGTVIMEPTHPNVYEQLIDHTK 416 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID--~~~g~V~~~~~~~~~yqqvi~kt~ 416 (439)
+..|+... .-+..++...||+.+|+|+.-+-+.|-.|...|-+...-| ...+.+..........+.+....+
T Consensus 22 ~~~il~~l-~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~~~ 95 (109)
T 1sfx_A 22 DVRIYSLL-LERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSIL 95 (109)
T ss_dssp HHHHHHHH-HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHHHHHH
Confidence 44444444 3367899999999999999999999999999998875544 333334443333445555544433
No 135
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=80.85 E-value=37 Score=34.14 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHH-HHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGK-MAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~-la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.|+..+....+|.++...|++++|..++..+...++.+......+|.. +..|...++.+.+.+-..++.+...+
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 345567889999999999999999999999888766544455556744 66688889999998888888887763
No 136
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=80.40 E-value=41 Score=31.96 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhhccccch---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 013640 130 ALYQYAKFQFECGNYSGAADYLYQYRALCTNSER---RLSALWGKMAAEILMQNWDIALEELNQLKEKVDDP 198 (439)
Q Consensus 130 al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~---k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~ 198 (439)
..+-.|.+++..|+|+.|.+++.....+....+. ...++...=.+-...++++.|.+...++-++..+.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 3466799999999999999999999887654322 23333332233445689999999999999988873
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=79.82 E-value=9 Score=32.22 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch---hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER---RLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~---k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
+.....++..+|..++..|+|+.|.+++......+...+. ...+++..=.+-...++++.|.+.+.+.-++.+.
T Consensus 22 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 22 PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98 (203)
T ss_dssp TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3356778999999999999999999999998887664332 2334444434455678999999999999888775
No 138
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=79.63 E-value=8.5 Score=30.81 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 342 NARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 342 ~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
..|..|+... ....++...||+.+|+|+.-+-+.|-.|...|-+...-+
T Consensus 21 ~~r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 21 ETRWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4577777755 467799999999999999999999999999998876544
No 139
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=79.51 E-value=42 Score=31.61 Aligned_cols=76 Identities=12% Similarity=-0.055 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc---hhHHHHHHHHHHHHhhcC-----------------H
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE---RRLSALWGKMAAEILMQN-----------------W 181 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~---~k~~~lwg~la~eIl~~~-----------------w 181 (439)
+-.+....+++.+|..++..|+|+.|.+++..........+ ....++...-.+-...++ +
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence 33577788999999999999999999999988877654322 223344444344445667 7
Q ss_pred HHHHHHHHHHHHHhcC
Q 013640 182 DIALEELNQLKEKVDD 197 (439)
Q Consensus 182 ~~a~~~l~klke~id~ 197 (439)
+.|.+...+.-++..+
T Consensus 200 ~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776665554
No 140
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=79.47 E-value=10 Score=36.31 Aligned_cols=76 Identities=11% Similarity=-0.016 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc--cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN--SERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~--~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
|-+.....++..+|..++..|+|+.|.+++......... +.....++...=.+-...++++.|.+.+++.-++..+
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 433444556677777777777777777777766664432 2222444444444444566777777777777666554
No 141
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=79.06 E-value=33 Score=30.13 Aligned_cols=61 Identities=13% Similarity=-0.035 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
..+++.+|..++..|+|+.|.+++.......++.. .++...-.+-...++|+.|.+.+.++
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---DMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45688999999999999999999988888655432 33333334445578888887766555
No 142
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=78.93 E-value=15 Score=37.13 Aligned_cols=81 Identities=10% Similarity=-0.013 Sum_probs=59.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhc--------CChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHH
Q 013640 114 LQMLHDRYQIGPDQIEALYQYAKFQFEC--------GNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIAL 185 (439)
Q Consensus 114 ~~~l~~~~g~t~e~~~al~~~ak~~y~~--------Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~ 185 (439)
.+.+++-..+.++...+++.+|..+... |+|+.|.+++.....+.+.......++...=.+-...++++.|.
T Consensus 199 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~ 278 (474)
T 4abn_A 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555556777788999999999999 99999999999988875522233444444444555678999999
Q ss_pred HHHHHHHHH
Q 013640 186 EELNQLKEK 194 (439)
Q Consensus 186 ~~l~klke~ 194 (439)
+.+.++-++
T Consensus 279 ~~~~~al~l 287 (474)
T 4abn_A 279 EGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988888665
No 143
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=78.60 E-value=4.9 Score=30.85 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 345 LFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 345 ~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
..|++ ++.-...++...||+.||+|..-+-+.|..|...|-+.
T Consensus 3 ~~Il~-~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILE-FLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHH-HHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34443 33445779999999999999999999999999999886
No 144
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=78.60 E-value=4.5 Score=33.82 Aligned_cols=77 Identities=10% Similarity=-0.098 Sum_probs=53.1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHH-HHHhhcCHHHHHHH-HHHH
Q 013640 114 LQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMA-AEILMQNWDIALEE-LNQL 191 (439)
Q Consensus 114 ~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la-~eIl~~~w~~a~~~-l~kl 191 (439)
.+++++-..+.|+..++++.+|..+...|+++.|.+.+.....+.++. .. .|..++ +-...++++.|.+. ++++
T Consensus 51 ~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~-~~~~la~~~~~~~~~~~aa~~~~~~a 126 (150)
T 4ga2_A 51 KKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ---KD-LVLKIAELLCKNDVTDGRAKYWVERA 126 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH-HHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345566666678888999999999999999999999999888865543 22 233333 33345666655554 5666
Q ss_pred HHH
Q 013640 192 KEK 194 (439)
Q Consensus 192 ke~ 194 (439)
-++
T Consensus 127 l~l 129 (150)
T 4ga2_A 127 AKL 129 (150)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=78.12 E-value=18 Score=33.29 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc---ccch-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCT---NSER-RLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~---~~~~-k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
....++..+|.+|+..|+|+.|.+++........ +... ...++...-.+-...++++.|.+..+++-++..+
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3467889999999999999999999988875432 2211 2245555555666678999999999988877654
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=77.88 E-value=10 Score=32.58 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
...++.+|..++..|+|+.|.+++.......++. ..+++.+=.+-...++++.|.+.+.++-++-
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 4688999999999999999999999888865432 3444444455566789999999888876653
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=77.86 E-value=5.6 Score=33.36 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHH-HHhcCCh--hhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 126 DQIEALYQYAKF-QFECGNY--SGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 126 e~~~al~~~ak~-~y~~Gdy--~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
+....++.+|.. ++..|+| +.|.+++.......++. ..+++..-.+-...++++.|.+.+.++-++-.
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE---ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 345688899999 7899999 99999998888765432 23444444456667899999888887765443
No 148
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.63 E-value=28 Score=32.12 Aligned_cols=79 Identities=11% Similarity=-0.017 Sum_probs=58.2
Q ss_pred HhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchh--HHHHHHHHHHHHhh--cCHHHHHHHHHHHHHH
Q 013640 119 DRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR--LSALWGKMAAEILM--QNWDIALEELNQLKEK 194 (439)
Q Consensus 119 ~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k--~~~lwg~la~eIl~--~~w~~a~~~l~klke~ 194 (439)
...|-......++..+|..+.+.|+|+.|.+++.....+.+..+.. ....|..++.-... ++++.|.+...+.-++
T Consensus 68 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~ 147 (292)
T 1qqe_A 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 3445344567899999999999999999999999888876654433 23455555544432 8999999999988887
Q ss_pred hcC
Q 013640 195 VDD 197 (439)
Q Consensus 195 id~ 197 (439)
...
T Consensus 148 ~~~ 150 (292)
T 1qqe_A 148 YAQ 150 (292)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 149
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=76.41 E-value=7 Score=30.32 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceee
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKI 391 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKI 391 (439)
+-...|..|+.... -+..++...||+.+|+|+.-+-+-|-+|...|-+...-
T Consensus 13 l~~~~~~~iL~~L~-~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 13 LGNPVRLGIMIFLL-PRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHSHHHHHHHHHHH-HHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCChHHHHHHHHHH-hcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 34456777776554 35789999999999999999999999999999887655
No 150
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=75.92 E-value=49 Score=30.52 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHH-HHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGK-MAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~-la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.|+..+....+|.++.+.|+++.|..++......+.-+......+|.. +..+...++++.|.+-..++.+...+
T Consensus 199 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 344567889999999999999999999999888643122223344543 45666689999999888888776654
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=75.89 E-value=11 Score=36.03 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc------------hhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE------------RRLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~------------~k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
.++...+++.+|..++..|+|+.|.+++.....+.+... ....++...=.|-+..++|+.|.+...++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466778999999999999999999999999888776542 11344444445556678999999998888
Q ss_pred HHH
Q 013640 192 KEK 194 (439)
Q Consensus 192 ke~ 194 (439)
-++
T Consensus 223 l~~ 225 (336)
T 1p5q_A 223 LEL 225 (336)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 152
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=75.57 E-value=13 Score=31.63 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
..+++.+|..++..|+|+.|.+++.......++. ..++...=.+-...++++.|.+.+.++-++...
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 4589999999999999999999999888765432 334444444455578999999998888776554
No 153
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=75.41 E-value=6.3 Score=32.47 Aligned_cols=68 Identities=9% Similarity=0.170 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT 403 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~ 403 (439)
+..+...+..+..|..--+.+-..+ +...||+.||||..-+-+-+..|...|-+..+ .-.|+++...+
T Consensus 9 ~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~~~~ 77 (113)
T 3tqn_A 9 PIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVKAGA 77 (113)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECTTH
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEeCCc
Confidence 5667888999999999889999999 99999999999999999999999999987543 56777776543
No 154
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=75.14 E-value=9.7 Score=37.44 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=55.2
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
..+....+++.+|..++..|+|+.|.+++.....+.++ ...+++.+=.+-...++++.|.+.++++.++-.
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 46677789999999999999999999999988886543 234444444455567899999999998877643
No 155
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=74.63 E-value=11 Score=35.24 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchh---HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR---LSALWGKMAAEILMQNWDIALEELNQLK 192 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k---~~~lwg~la~eIl~~~w~~a~~~l~klk 192 (439)
....++..+|.++...|+|+.|.+++.......+..+.. ...+.+...+-...++++.|.+...+.-
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445678888999999999999998888887776543322 2244444445555688888888877775
No 156
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=74.23 E-value=55 Score=30.29 Aligned_cols=78 Identities=10% Similarity=-0.050 Sum_probs=55.4
Q ss_pred hcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch---hHHHHHHHHHHHHhhcC----------------
Q 013640 120 RYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER---RLSALWGKMAAEILMQN---------------- 180 (439)
Q Consensus 120 ~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~---k~~~lwg~la~eIl~~~---------------- 180 (439)
..+-++....+++.+|..++..|+|+.|.+++..........+. ...++...-.+-...++
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 33446677889999999999999999999999988877654322 22233333334444567
Q ss_pred ----HHHHHHHHHHHHHHhcC
Q 013640 181 ----WDIALEELNQLKEKVDD 197 (439)
Q Consensus 181 ----w~~a~~~l~klke~id~ 197 (439)
++.|.+...+.-++..+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887777665
No 157
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=73.56 E-value=9.7 Score=36.55 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
...+++.+|..++..|+|+.|.+++.....+.++. ..+++.+=.+-...++++.|.+.+.++-++-
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 46788999999999999999999999988876542 3344444445556789999999998887753
No 158
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=73.41 E-value=8.6 Score=32.52 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=61.7
Q ss_pred cccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 333 VPLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 333 ~~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
.|....+.+..|..|..--++|-.++ +...||+.||||..=+-+-+..|-..|-+..+ .-.|+.+....+
T Consensus 13 ~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~~~ 83 (134)
T 4ham_A 13 LPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQTD 83 (134)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCSS
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCCch
Confidence 36788999999999999999999999 89999999999999999999999999988654 667888876543
No 159
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=73.22 E-value=79 Score=31.61 Aligned_cols=76 Identities=13% Similarity=-0.066 Sum_probs=55.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNY-SGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy-~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
..+++..+..++..+.++.+|..++..|+| +.|.+++.....+.++. ..++...=.+-...++++.|.+...++-+
T Consensus 89 ~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 89 QQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555677788999999999999999 99999999988875542 23333333344456899999888877644
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=73.05 E-value=13 Score=34.41 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=29.4
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~ 160 (439)
.+++-..+.++...+++.+|..++..|+|++|.+++.....+.++
T Consensus 60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 344444555666667777777777777777777777766665554
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=72.89 E-value=14 Score=37.12 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc------------hhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE------------RRLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~------------~k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
.++..++++.+|..++..|+|+.|...+.....+.+... ....++...=.|-...++|+.|.+...++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 356677899999999999999999999999888766542 12444555555666788999999999888
Q ss_pred HHHh
Q 013640 192 KEKV 195 (439)
Q Consensus 192 ke~i 195 (439)
-++-
T Consensus 344 l~~~ 347 (457)
T 1kt0_A 344 LGLD 347 (457)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 7653
No 162
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=72.64 E-value=18 Score=28.02 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecc
Q 013640 343 ARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDA 393 (439)
Q Consensus 343 aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~ 393 (439)
.+..++...++....++...||+.+|+|..-+-+.|-.|...|-+...-+.
T Consensus 22 ~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 22 TDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 345555556666788999999999999999999999999999988755443
No 163
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=72.42 E-value=18 Score=31.66 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~ 160 (439)
.+++-..+.|+..++++.+|..++..|+|+.|.+.+.....+-++
T Consensus 76 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 76 FYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344444556777889999999999999999999999988887665
No 164
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.41 E-value=11 Score=28.08 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=32.2
Q ss_pred ChhHHH-HHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 124 GPDQIE-ALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 124 t~e~~~-al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
.++... +++.+|..++..|+|+.|.+++.....+.++.
T Consensus 30 ~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 30 EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 445556 89999999999999999999999988876653
No 165
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=72.40 E-value=4.7 Score=29.32 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~ 160 (439)
.++....++.+|..++..|+|+.|.+++.......++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4445678999999999999999999999998887654
No 166
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=71.78 E-value=66 Score=30.13 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=48.6
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHH
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMA-AEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la-~eIl~~~w~~a~~~l~klke~ 194 (439)
.+++-....|+.......+|.++...|+++.|.+++.......++. ...|..++ +-...++++.|.+...++-++
T Consensus 123 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444566667778888888888899998888888777654432 22333333 333456788888777776553
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=71.69 E-value=20 Score=28.63 Aligned_cols=63 Identities=13% Similarity=-0.064 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
...+..|..+++.|+|+.|...+......-++. ..+.+..=.+-...++++.|.+.+.++-++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER---EEAWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 357899999999999999999998888765432 223333223444578999999888877654
No 168
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=71.58 E-value=6 Score=31.23 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHcCCCHH-HHHHHHHHHhhcCccc
Q 013640 341 ENARLFIFETYCRIHQRIDMAVLAEKLNLNYE-EAQRWIVNLIRNSKLD 388 (439)
Q Consensus 341 e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~-~~E~wiv~lI~~~rL~ 388 (439)
.+.+-.|+ .|++-+...+...||+.||+|.. .|-+-|..|=++|-+.
T Consensus 10 ~~~~~~IL-~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 10 AEIKEKIC-DYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHH-HHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hhHHHHHH-HHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 35566666 88999999999999999999999 9999999999999886
No 169
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=71.25 E-value=20 Score=29.77 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhhhcc-ccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeeccc--CCE--EEeCCCCchhHHHHHHhhh
Q 013640 342 NARLFIFETYCRIHQR-IDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAK--SGT--VIMEPTHPNVYEQLIDHTK 416 (439)
Q Consensus 342 ~aR~~ife~ycriy~~-I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~--~g~--V~~~~~~~~~yqqvi~kt~ 416 (439)
..+..|+...++--.. ++...||+.+|+|..-+-+-|-+|...|-+.-.-+.. .|. +....+...+++.+.+..+
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~ 105 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQ 105 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHH
Confidence 4466677777665444 9999999999999999999999999999886443332 232 2233344567777777766
Q ss_pred hhhhHHHH
Q 013640 417 GLSGRTYK 424 (439)
Q Consensus 417 ~L~~R~q~ 424 (439)
.+..++..
T Consensus 106 ~~~~~~~~ 113 (123)
T 3r0a_A 106 SWADRLGQ 113 (123)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 170
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=70.91 E-value=12 Score=28.89 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 341 ENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 341 e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
...|..|+... .-...+++..||+.+|+|+.-+-+.|..|...|-+...-|
T Consensus 23 ~~~~~~il~~l-~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 23 HPKRLLILCML-SGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp SHHHHHHHHHH-TTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred ChHHHHHHHHH-HhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 35667777654 4466899999999999999999999999999998865544
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=70.75 E-value=9.5 Score=35.46 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.++....++.+|..++..|+|+.|.+.+.....+.++. ..++...=.+-...++|+.|.+.+.++-++-..
T Consensus 34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 45556789999999999999999999998887764432 233333333444578999999999888776543
No 172
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=70.54 E-value=8.5 Score=32.57 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=49.1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHH
Q 013640 114 LQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELN 189 (439)
Q Consensus 114 ~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~ 189 (439)
...+++-....|+..++++.+|..+...|+|++|.+.+.......++.. ...+.+....+-...++++.|.....
T Consensus 94 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 94 LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-DGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-TTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-hHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3445555555777788999999999999999999999998877654321 11222222233334566666665544
No 173
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=70.10 E-value=5.6 Score=31.46 Aligned_cols=46 Identities=20% Similarity=0.098 Sum_probs=36.7
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~ 160 (439)
..+++-...+|+...+++-+|..+++.|+|..|.+++..+....++
T Consensus 30 ~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 30 LLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455555668888889999999999999999999988888775554
No 174
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=69.97 E-value=84 Score=30.58 Aligned_cols=167 Identities=14% Similarity=0.000 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCCCCChHHH
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQ 207 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~~~~~~~l~~ 207 (439)
..+++.+|.+++..|+++.|.+++.......++ ...+...-.+-...++|+.|.+.+.++-+.-.. ++. .
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~-~ 312 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-----YPP-T 312 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-----CHH-H
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-----CHH-H
Confidence 447899999999999999999999998886554 333333333444568899999888887654322 221 1
Q ss_pred HHHHHHHHHHHHHHHhcCccchHHHHHHhccccchhHHHh--hchhHHHHHHHHHHHhc-cc-ccchHHHHHHHhhhccC
Q 013640 208 MQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQT--NAPHLLRYLATAFIVNK-RR-RPQFKDFIKVIQQEQNS 283 (439)
Q Consensus 208 l~~R~WllHwsLf~~fn~~~~~~~l~d~F~~~~yl~~Iqt--~~p~lLrYlvva~il~~-~r-~~~l~~i~~vi~qe~~~ 283 (439)
+... +.. ++... ..+.-++.|. .++.. ..+..... .+.+... .+ ...+..+-+++... +.
T Consensus 313 ~~~l------~~~-~~~~~-~~~~A~~~~~-----~a~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~-~~ 376 (537)
T 3fp2_A 313 YYHR------GQM-YFILQ-DYKNAKEDFQ-----KAQSLNPENVYPYIQ--LACLLYKQGKFTESEAFFNETKLKF-PT 376 (537)
T ss_dssp HHHH------HHH-HHHTT-CHHHHHHHHH-----HHHHHCTTCSHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHH------HHH-HHhcC-CHHHHHHHHH-----HHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 1111 111 11111 1122222222 11111 11222222 3333322 22 22233333333332 22
Q ss_pred CcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCcc
Q 013640 284 YKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPF 320 (439)
Q Consensus 284 Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~F 320 (439)
..+....+-.+.+..-++++|.+.+..+-+.-.++..
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 2234666677778888999999998887776554443
No 175
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=69.58 E-value=8.7 Score=29.80 Aligned_cols=39 Identities=18% Similarity=0.033 Sum_probs=32.7
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~ 160 (439)
.+.++...+++.+|..+...|+++.|.+++.......+.
T Consensus 47 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 47 DFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 345566778999999999999999999999988887654
No 176
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=69.32 E-value=2.9 Score=33.60 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCchhHHHHH
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLI 412 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~~~yqqvi 412 (439)
+..+.+.+..|..|....+.+-..+ +...||+.||+|..-+-+-|..|...|-+..+ .-.|+.+...+....+...+
T Consensus 11 ~~~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~~~~~~~~~~~r~ 88 (102)
T 1v4r_A 11 KGYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVEKNPIVITGADRL 88 (102)
T ss_dssp CCHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESCSCCCCCSSHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEccCCccccHHHHH
Confidence 4567888889999998778888898 99999999999999999999999999887543 33577776555433333333
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=69.25 E-value=14 Score=36.29 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc-------------cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN-------------SERRLSALWGKMAAEILMQNWDIALEELNQLK 192 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~-------------~~~k~~~lwg~la~eIl~~~w~~a~~~l~klk 192 (439)
+...++..+|..+++.|+|+.|.+.+......... ......++...=.|-...++|+.|.+...++-
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35567899999999999999999999888774432 12234444444455566789999998888775
Q ss_pred H
Q 013640 193 E 193 (439)
Q Consensus 193 e 193 (439)
+
T Consensus 301 ~ 301 (370)
T 1ihg_A 301 E 301 (370)
T ss_dssp T
T ss_pred H
Confidence 5
No 178
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=69.24 E-value=9.4 Score=32.14 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
+..+...+..|..|...-+.+-.++ +...||+.||||..-+-+-+..|...|-+.. -.-.|+.+..
T Consensus 11 ~~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 11 PVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 4567888999999999888999999 9999999999999999999999999998843 3567888865
No 179
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=68.86 E-value=18 Score=31.91 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 336 RDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 336 ~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
...+-=..|.+++-.-...-+.++++.||+++|+|+..+++-+..|-+.|=+..+=. .+|-....+++
T Consensus 23 S~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar~p 90 (159)
T 3lwf_A 23 TTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG-AHGGYVLNGDP 90 (159)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS-TTCEEEECSCT
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC-CCCceEecCCH
Confidence 344455666666655433335699999999999999999999999999998765432 35556667666
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=68.60 E-value=2.7 Score=32.67 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=34.7
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc
Q 013640 117 LHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN 160 (439)
Q Consensus 117 l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~ 160 (439)
+++-..+.|+...+++.+|..+...|+|++|.+.+.....+...
T Consensus 30 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 30 FEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 33333345666679999999999999999999999988877543
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=67.82 E-value=13 Score=37.94 Aligned_cols=33 Identities=12% Similarity=-0.070 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRAL 157 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~ 157 (439)
++...+++.+|..+++.|+|++|.+++.....+
T Consensus 37 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 37 PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 333445555555555555555555555555443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=67.72 E-value=4.5 Score=31.92 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=36.7
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 116 MLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 116 ~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
.+++-..+.|+..++++.+|..++..|+|++|.+++.......+++
T Consensus 49 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 49 VLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3444444466667899999999999999999999999988876654
No 183
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=67.71 E-value=78 Score=29.33 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 137 FQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 137 ~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
++...|+|++|.+++.......++ ...++++.-.+-...++|+.|.+.+.++-+
T Consensus 175 l~~~~~~~~eA~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 175 LAAGGEKLQDAYYIFQEMADKCSP---TLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333446777777777766665433 244555555566667777777776666543
No 184
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=67.65 E-value=14 Score=31.77 Aligned_cols=67 Identities=13% Similarity=0.010 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCc
Q 013640 338 EFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHP 405 (439)
Q Consensus 338 ~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~ 405 (439)
.+--..|.+++-.-...-+.++++.||+++|+|+..+++-+..|-+.|=+..+ --.+|-....+++.
T Consensus 9 ~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 9 KGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV-RGAKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-SSSSSEEEESSCGG
T ss_pred HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec-CCCCCCeeecCCcc
Confidence 34445666665554333357999999999999999999999999999977653 23356677777763
No 185
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=67.15 E-value=7.4 Score=34.66 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhc--cccHHHHHHHcCCCHHHHHHHHH
Q 013640 334 PLRDEFLENARLFIFETYCRIHQ--RIDMAVLAEKLNLNYEEAQRWIV 379 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~--~I~I~~lA~~l~~s~~~~E~wiv 379 (439)
.+..+|-+.|+.++-..++-+|. .+++..+|+.||||..-+=+|.-
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 36689999999999999997777 59999999999999999999987
No 186
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=67.13 E-value=8.5 Score=30.28 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhhhhcc---ccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 339 FLENARLFIFETYCRIHQR---IDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~---I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
++......+...++.-... ++...||+.+|++..-+=+.|-+|...|=+...-|.-...|..+
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 3333344444445444445 99999999999999999999999999998833333333334443
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=67.08 E-value=41 Score=31.49 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch--hHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER--RLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~--k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
+.....+..+|..++..|+++.|.+++......+...+. ...+++..-.+....++++.|...+.+..++...
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 556677888999999999999999999998887765332 3445555555667789999999999998887665
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=67.07 E-value=19 Score=36.25 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
...+++.+|..++..|+|+.|.+++.....+-++ ...+++.+=.+-...++|+.|.+.+.++-++
T Consensus 316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999998886554 3455555555666678999999998888664
No 189
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=66.50 E-value=5 Score=39.64 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhh----ccccHHHHHHHcCCC-HHHHHHHHH
Q 013640 335 LRDEFLENARLFIFETYCRIH----QRIDMAVLAEKLNLN-YEEAQRWIV 379 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy----~~I~I~~lA~~l~~s-~~~~E~wiv 379 (439)
..+-|+..+|..+....++.| +.++++.|++.||.+ .+++..|+-
T Consensus 198 lle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 198 FLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp HHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 456678899999999999999 589999999999995 777777764
No 190
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=66.50 E-value=15 Score=29.80 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 343 ARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 343 aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
.|..|. ..+++-..+ +...||+.||||..-+-+-|..|..+|-+...=....|+.+..
T Consensus 29 i~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 29 AIEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp HHHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred HHHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 467777 667888888 9999999999999999999999999998754311145776654
No 191
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=65.76 E-value=15 Score=30.78 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 333 VPLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 333 ~~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
.+....+.+..|..|...-+.+-.++ +...||+.||||..-+-+-+..|...|-+..+ .-.|+++..
T Consensus 12 ~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp SCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 35678899999999999888999999 59999999999999999999999999988543 557888765
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=65.75 E-value=11 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
+.|+...+++.+|..++..|+|+.|.+.+.....+.++.
T Consensus 33 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 33 AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 345556789999999999999999999999998877654
No 193
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=64.42 E-value=20 Score=30.79 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 338 EFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 338 ~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
.+--..|.+++-.. ..-+.++++.||+++|+|+..+++.+..|-+.|=+..+=. +|-....+++
T Consensus 12 ~~~yAl~~L~~La~-~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~p 75 (149)
T 1ylf_A 12 RFSIAVHILSILKN-NPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHHHHH-SCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred HHHHHHHHHHHHHh-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEeCCCh
Confidence 34446666666554 2346799999999999999999999999999987765433 5666667666
No 194
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=64.40 E-value=18 Score=28.22 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 340 LENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 340 ~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
-...|..|+....+ ..++...||+.+|+|..-+-+-|..|...|-+...-+
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 21 ANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp CSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567788876665 7899999999999999999999999999998876544
No 195
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=64.19 E-value=19 Score=38.28 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
...++..++++.+|..+++.|+|+.|.+.+......-+++ ..+++..=.+-...++++.|.+..+++-++-
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTF 497 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5567788899999999999999999999999888865543 3344444445556789999999888876543
No 196
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=63.68 E-value=96 Score=28.96 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHH-HHHHhhcCHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKM-AAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~l-a~eIl~~~w~~a~~~l~klke 193 (439)
+.+++-..+.|+..++++.+|..+...|+++.|.+.+.......++.. ..|..+ .+-...++++.|.+...++-+
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY----CVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT----HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344455556777788899999999999999999999888777654321 122222 233345889999888777655
Q ss_pred H
Q 013640 194 K 194 (439)
Q Consensus 194 ~ 194 (439)
.
T Consensus 164 ~ 164 (388)
T 1w3b_A 164 T 164 (388)
T ss_dssp H
T ss_pred h
Confidence 3
No 197
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=63.59 E-value=52 Score=30.35 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=67.9
Q ss_pred HHHHHHHccCCCchHHHHHHHHhC---CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhH-HHH------h-h
Q 013640 39 KSKIELLNKTNMVDYAMDIHKSLY---HTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQ-NPNS-FQD------L-R 106 (439)
Q Consensus 39 ~a~~~llk~TnM~dy~~~~~~~l~---~~~~~p~e~~~k~~ev~~~l~~l~~~~~~~~~~~~-~~e~-~~~------l-~ 106 (439)
-..-..+...+-.+-+...++..- |+ ..+..-....+..+....+++..-+-+++. +|+. ... + +
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 333333444555666666666542 33 123333344555555555555544333332 1211 000 1 1
Q ss_pred hcchhccHHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 107 ANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 107 ~~dk~~n~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
..+...-...+++-....|+..++.+.+|..+...|++++|.+.+......-++.
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 1011112345555555678888999999999999999999999999988876553
No 198
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.11 E-value=10 Score=30.30 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce
Q 013640 342 NARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA 389 (439)
Q Consensus 342 ~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a 389 (439)
..+..|. .+++... ++...||++||+|...+-+-|-+|-++|-+..
T Consensus 17 ~~~~~IL-~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAI-KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHH-HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHH-HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4444455 5777544 99999999999999999999999999997753
No 199
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=62.79 E-value=37 Score=28.00 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
+-...|.+.+-..-..-+.++++.||+++|+|+..+.+.+..|-+.|=+...=. .+|-....+++
T Consensus 8 ~~~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g-~~ggy~L~~~~ 72 (129)
T 2y75_A 8 GRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG-AYGGYVLGSEP 72 (129)
T ss_dssp HHHHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSCG
T ss_pred HHHHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCC-CCCceEeCCCH
Confidence 334445554332211236799999999999999999999999999987754322 34556666655
No 200
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=62.28 E-value=16 Score=30.84 Aligned_cols=67 Identities=19% Similarity=0.154 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+..+...+..|..|..--+.|=..+ +...||+.||||..-+-+-+..|...|-+. .-.-.|+.+...
T Consensus 4 ~~~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~--~~~g~G~~V~~~ 71 (129)
T 2ek5_A 4 PLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILY--KKRGIGMFVSAQ 71 (129)
T ss_dssp CHHHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEE--EETTTEEEECTT
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE--EecCCEEEEecC
Confidence 4557788888999998888999999 999999999999999999999999999874 345678877643
No 201
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=62.25 E-value=13 Score=30.03 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 342 NARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 342 ~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
..|..|+..... ..+++..||+.+|+|+.-+-+.|..|...|-+..+-|
T Consensus 25 ~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 25 GRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp STTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345566665543 7789999999999999999999999999998876544
No 202
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=61.86 E-value=30 Score=32.21 Aligned_cols=76 Identities=20% Similarity=0.069 Sum_probs=50.6
Q ss_pred cCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchh---HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 121 YQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERR---LSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 121 ~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k---~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.|-......++..+|..|.. |+|+.|.+++.....+.+..+.. ..++...-.+-...++++.|.+...++-++..+
T Consensus 109 ~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 109 NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34233456788888999988 99999999888887776544322 233333333344567888888888877666554
No 203
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=60.77 E-value=14 Score=28.95 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=34.9
Q ss_pred hhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 351 YCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 351 ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
.+..-...+...||.+||++.-.+-+-|-+|=+.|.+.
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 67788889999999999999999999999999988775
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=60.17 E-value=20 Score=34.38 Aligned_cols=70 Identities=11% Similarity=-0.015 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch--------------hHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER--------------RLSALWGKMAAEILMQNWDIALEELNQ 190 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~--------------k~~~lwg~la~eIl~~~w~~a~~~l~k 190 (439)
++..++++..|..++..|+|+.|..++.......++... +..+++..=.|-...++|+.|.+...+
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 446678999999999999999999999988776654220 112444444455567899999998888
Q ss_pred HHHH
Q 013640 191 LKEK 194 (439)
Q Consensus 191 lke~ 194 (439)
+-++
T Consensus 256 al~~ 259 (338)
T 2if4_A 256 VLTE 259 (338)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 205
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=60.05 E-value=16 Score=33.93 Aligned_cols=64 Identities=19% Similarity=0.067 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
++..+.++..|..+.+.|+++.|.+.+......-++. ..++.+.-.+-+..++++.|.+.+.++
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5677899999999999999999999999988866543 355555556667788999887766655
No 206
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=59.85 E-value=84 Score=27.62 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc-------cch-hHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHhc
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTN-------SER-RLSALWGKMAAEI-LMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~-------~~~-k~~~lwg~la~eI-l~~~w~~a~~~l~klke~id 196 (439)
.+.+.+...|..++..|+|+.|.+.+.......++ ... .-...|.-++.-. -.++|+.|.....++=++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35678899999999999999999999998888776 211 1223565555443 36899999999999988766
Q ss_pred C
Q 013640 197 D 197 (439)
Q Consensus 197 ~ 197 (439)
.
T Consensus 89 ~ 89 (159)
T 2hr2_A 89 R 89 (159)
T ss_dssp H
T ss_pred c
Confidence 5
No 207
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=59.69 E-value=30 Score=24.58 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHc-----CCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 342 NARLFIFETYCRIHQRIDMAVLAEKL-----NLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 342 ~aR~~ife~ycriy~~I~I~~lA~~l-----~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
..|..++..+++....++.+.|++.| |||..=+-+.|-.+ |.+ |+...+|.
T Consensus 4 ~~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~ 59 (64)
T 2p5k_A 4 GQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGS 59 (64)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCc
Confidence 46888888888889999999999999 99999988888733 433 55544543
No 208
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=59.40 E-value=38 Score=31.17 Aligned_cols=77 Identities=9% Similarity=-0.039 Sum_probs=53.5
Q ss_pred hcCCChhHHHHHHHHHHHHHhc-CChhhHHHHHHHHHhhccccchh--HHHHHHHH-HHHHhhcCHHHHHHHHHHHHHHh
Q 013640 120 RYQIGPDQIEALYQYAKFQFEC-GNYSGAADYLYQYRALCTNSERR--LSALWGKM-AAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 120 ~~g~t~e~~~al~~~ak~~y~~-Gdy~~A~~~L~~~~~~~~~~~~k--~~~lwg~l-a~eIl~~~w~~a~~~l~klke~i 195 (439)
..|-......++..+|..|... |+|+.|.+++.....+.++.+.. ....|..+ .+-+..++++.|.+...++-++-
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3443334567889999999996 99999999999988877654332 22233333 33344689999998888776654
Q ss_pred c
Q 013640 196 D 196 (439)
Q Consensus 196 d 196 (439)
.
T Consensus 189 ~ 189 (292)
T 1qqe_A 189 M 189 (292)
T ss_dssp S
T ss_pred h
Confidence 3
No 209
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.75 E-value=13 Score=35.83 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcC
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNS 385 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~ 385 (439)
+.+-|+..+|..|....++.|++|+++.+++.|+.+.++ .+..|+..-
T Consensus 177 f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~---e~~~F~~~~ 224 (274)
T 4b4t_T 177 FTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEK---ETEKFALER 224 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHH---HHHHHHHHc
Confidence 458899999999999999999999999999999986432 444555443
No 210
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.59 E-value=30 Score=28.38 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 343 ARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 343 aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
....++....+.+..+++..||+.+|+|..-+-+.|-+|...|=+.-.-|..++
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 334444444444788999999999999999999999999999988766554433
No 211
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=58.13 E-value=18 Score=30.69 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=37.8
Q ss_pred hhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc---eeeccc
Q 013640 351 YCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD---AKIDAK 394 (439)
Q Consensus 351 ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~---aKID~~ 394 (439)
.++-..+++...||+++|+|+.-+-+.|-+|...|-+. |.+|..
T Consensus 16 ~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 16 ALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 44556889999999999999999999999999999764 567765
No 212
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=57.30 E-value=1.1e+02 Score=27.69 Aligned_cols=72 Identities=8% Similarity=0.054 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc-hhHHHHHHHH--HHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 126 DQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE-RRLSALWGKM--AAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~-~k~~~lwg~l--a~eIl~~~w~~a~~~l~klke~id~ 197 (439)
+..+.+...+..++..|+|+.|.+.+........... ......|-.. .+-...++++.|.+.+.++-+...+
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3445667889999999999999999988777554322 2222233222 2223345899998888877655444
No 213
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=56.79 E-value=15 Score=37.32 Aligned_cols=74 Identities=8% Similarity=0.082 Sum_probs=46.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELN 189 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~ 189 (439)
+.+++-..+.++...+++.+|..++..|+|++|.+++.....+.++... .-...+....-+-.++++.|.+...
T Consensus 61 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 61 GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTT-HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444445556777889999999999999999999999998887654322 2222333322333455555555444
No 214
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=56.72 E-value=31 Score=27.49 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 341 ENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 341 e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
...|..|+.... ...+++..||+.+|+|+.-+-+-|..|...|-+...-+
T Consensus 25 ~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 25 DYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp SHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456777777655 57789999999999999999999999999998865533
No 215
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=56.29 E-value=29 Score=33.25 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
.+++.+|..++..|+|+.|.+++.....+.++ ...+++.+=.+-...++|+.|.+.+.++-++
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999988876543 2344555445556678999999888877543
No 216
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.28 E-value=14 Score=24.21 Aligned_cols=26 Identities=4% Similarity=0.152 Sum_probs=23.0
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHH
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~l 381 (439)
...+...+|+.||+|..-+.+|+-++
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 56799999999999999999998654
No 217
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=56.26 E-value=45 Score=31.22 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=35.7
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEe
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIM 400 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~ 400 (439)
.+...+.+.||+.+|+++..++.-|.+|-..|=+.-+ .+|.|.+
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~---~~~~~~~ 218 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVKII---NDNTVVL 218 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEE---TTTEEEE
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEe---cCCeEEe
Confidence 3588999999999999999999999999888866422 4566654
No 218
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=56.15 E-value=22 Score=27.79 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCC
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT 403 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~ 403 (439)
+-...|..|+... ...++...||+.+|+|..-+-+-|-.|...|-+...- |....+..
T Consensus 28 l~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 28 VTNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp HSCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred hCCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 3345567777765 5779999999999999999999999999999886431 56655543
No 219
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=56.14 E-value=82 Score=27.68 Aligned_cols=78 Identities=13% Similarity=0.032 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhh-------ccccchh-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCC
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRAL-------CTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKS 200 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~-------~~~~~~k-~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~~~ 200 (439)
.+++.+|..+.+.|+|++|.+.+.....+ -++..+- +.+++.+=.+-.-+++++.|.+..+++-++......
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 38899999999999999999999988886 4332111 122245545555578999999999999998876555
Q ss_pred CCChHH
Q 013640 201 FTSPLN 206 (439)
Q Consensus 201 ~~~~l~ 206 (439)
+..-+.
T Consensus 138 ~~~~~~ 143 (159)
T 2hr2_A 138 ETPGKE 143 (159)
T ss_dssp CCTTHH
T ss_pred HHHHHH
Confidence 544443
No 220
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=55.47 E-value=11 Score=31.33 Aligned_cols=45 Identities=7% Similarity=-0.078 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce
Q 013640 343 ARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA 389 (439)
Q Consensus 343 aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a 389 (439)
+|..+...|-. ...++..+|+.||+++..+..|+-.+.+.|.+-.
T Consensus 8 l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 8 IWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp HHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 34444444432 4568889999999999999999999999998864
No 221
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=55.27 E-value=18 Score=31.01 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhh----hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce--eeccc
Q 013640 339 FLENARLFIFETYCRI----HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA--KIDAK 394 (439)
Q Consensus 339 f~e~aR~~ife~ycri----y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a--KID~~ 394 (439)
.+.+.-.+++-++.+- ..-++++.||+++|+|+.++.+.|.+||..|=|.= +.|..
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~ 90 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQN 90 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCC
Confidence 3444455555555553 46689999999999999999999999999997742 44543
No 222
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=55.06 E-value=17 Score=32.94 Aligned_cols=42 Identities=10% Similarity=-0.023 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHH
Q 013640 340 LENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 340 ~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~l 381 (439)
..+-|......+++-+..|+.+.||+.||+|++-+-+.+..|
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL 50 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYL 50 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHh
Confidence 457788999999999999999999999999999998888644
No 223
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.04 E-value=45 Score=27.09 Aligned_cols=42 Identities=14% Similarity=0.065 Sum_probs=36.4
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeeccc
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAK 394 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~ 394 (439)
..+..++...||+.+|+|+.-+-+.|-+|...|=+.-.-|..
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~ 89 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAE 89 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCc
Confidence 457889999999999999999999999999999887655543
No 224
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=54.94 E-value=27 Score=27.18 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=34.4
Q ss_pred hccccHHHH----HHHcCCCHHHHHHHHHHHhhcCccceeecc
Q 013640 355 HQRIDMAVL----AEKLNLNYEEAQRWIVNLIRNSKLDAKIDA 393 (439)
Q Consensus 355 y~~I~I~~l----A~~l~~s~~~~E~wiv~lI~~~rL~aKID~ 393 (439)
+..++...| |+.+|+|+.-+=+.|-+|...|=+.-..|.
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 678999999 999999999999999999999887766554
No 225
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=54.72 E-value=23 Score=29.92 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc---eeeccc
Q 013640 343 ARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD---AKIDAK 394 (439)
Q Consensus 343 aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~---aKID~~ 394 (439)
.+..+.. .++-..+++...||+++|+|+.-+-+-|-+|...|-+. +.+|..
T Consensus 4 ~~~~il~-~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 4 IDLRILK-ILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHH-HHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 3455554 45567789999999999999999999999999999764 467754
No 226
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=53.57 E-value=7.4 Score=32.96 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
.+.++..|..+...|+|+.|...+.......++ ...+..+.-.+-+..++|+.|.+.+.++
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 456788899999999999999888766554433 2344444444555678888887766554
No 227
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=53.42 E-value=18 Score=28.98 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcccee--ecccCCEEEe
Q 013640 342 NARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAK--IDAKSGTVIM 400 (439)
Q Consensus 342 ~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aK--ID~~~g~V~~ 400 (439)
..|..|+....++-..++...||+.||+|..-+-+-|..|...|-+... -|...|..+.
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 4566777777777767999999999999999999999999999988543 1244564443
No 228
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=53.15 E-value=20 Score=29.36 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 337 DEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 337 ~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
..+-...|..|+.... ...++...||+.+|+|..-+-+-|-.|...|-+...-+
T Consensus 13 ~al~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 13 QALADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp HHHTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHhCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec
Confidence 3444567888888776 47789999999999999999999999999998876655
No 229
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=53.08 E-value=43 Score=32.71 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Q 013640 129 EALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 129 ~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id 196 (439)
.+++-+|..++..|++++|.+++.......+ ....+.+.--...+-+.+++-+.|.+.++++++.-+
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 4567899999999999999999987644222 135677777778888889999999999999977643
No 230
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=52.80 E-value=50 Score=27.08 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcccee
Q 013640 336 RDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAK 390 (439)
Q Consensus 336 ~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aK 390 (439)
..-+-...|..|+....+ ...++...||+.+|+|+.-+-+.|..|...|-+...
T Consensus 36 ~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQ-DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 344455567788876543 577999999999999999999999999998877654
No 231
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=52.60 E-value=23 Score=32.74 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
.......+..|..|..-.++|-.+++...||+.||||..=+-.-|..|-..|-+. +-+-.|+++..
T Consensus 26 s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~--~~~~~G~~V~~ 91 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLR--VETHKGAVVAP 91 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--EETTTEEEECC
T ss_pred ccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE--EeCCCceEEec
Confidence 4456688999999999999999999999999999999999999999999999874 33456776643
No 232
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=52.31 E-value=2.1e+02 Score=29.31 Aligned_cols=88 Identities=7% Similarity=-0.025 Sum_probs=60.1
Q ss_pred HHhcCC-ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc---c-cchhHHHHHHHHHHHHh-hcCHHHHHHHHHHH
Q 013640 118 HDRYQI-GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT---N-SERRLSALWGKMAAEIL-MQNWDIALEELNQL 191 (439)
Q Consensus 118 ~~~~g~-t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~---~-~~~k~~~lwg~la~eIl-~~~w~~a~~~l~kl 191 (439)
++-+|- -+++...+..+|..|.+.|+|++|..++........ + .....-..+..|+.--. .++|+.|..-..++
T Consensus 340 ~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 340 EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344553 568899999999999999999999998877554422 2 12223333334443333 57899999999999
Q ss_pred HHHhcCCCCCCChH
Q 013640 192 KEKVDDPKSFTSPL 205 (439)
Q Consensus 192 ke~id~~~~~~~~l 205 (439)
-++.+..=+-.||.
T Consensus 420 l~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 420 YAILLVTHGPSHPI 433 (490)
T ss_dssp HHHHHHHTCTTSHH
T ss_pred HHHHHHHhCCCChH
Confidence 88888742335664
No 233
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=51.32 E-value=17 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=31.3
Q ss_pred cccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 357 RIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 357 ~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
-+++..||+++|+|+..+-+.|-+|+..|=|.=+-|
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 389999999999999999999999999997754444
No 234
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=51.25 E-value=57 Score=32.85 Aligned_cols=82 Identities=11% Similarity=-0.061 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc---c--cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT---N--SERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDP 198 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~---~--~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~~ 198 (439)
-+.+...+-.+|..|...|+|++|.++......... + .......+...=..-.-.++++.|.+-+.++-++....
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999998876554321 2 22234444333333344678999999999999998874
Q ss_pred CCCCChH
Q 013640 199 KSFTSPL 205 (439)
Q Consensus 199 ~~~~~~l 205 (439)
-+-.||.
T Consensus 405 lG~~Hp~ 411 (429)
T 3qwp_A 405 HGREHSL 411 (429)
T ss_dssp TCTTSHH
T ss_pred cCCCChH
Confidence 3335664
No 235
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=51.01 E-value=42 Score=27.54 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=35.9
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
+..++...||+.+|+|..-+-+.|-+|...|-+.-.-|..++.
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 6789999999999999999999999999999887666655444
No 236
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=50.96 E-value=19 Score=31.81 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhhcccc
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECG-----------NYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~G-----------dy~~A~~~L~~~~~~~~~~ 161 (439)
..+++-..+.|+..++++.+|..|++.| +|++|.+++.....+-++.
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 4566667778999999999999999885 8999999999888876653
No 237
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=50.82 E-value=37 Score=27.70 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=36.7
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
+..++...||+.+|+|+.-+-+.|-+|...|=+.-.-|..++
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 889999999999999999999999999999988766554433
No 238
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=50.19 E-value=43 Score=26.99 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=37.6
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
-+..++...||+.+|+|+.-+-+.|-+|...|=+.-.-|...+.
T Consensus 49 ~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 49 ETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 35689999999999999999999999999999887766655443
No 239
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=48.98 E-value=72 Score=24.86 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+-...|..|+..... ...+...||+.+|+|+.-+-+-|-.|...|-+..+-+........+.
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 334567777766643 56999999999999999999999999999988766554444444443
No 240
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=48.80 E-value=39 Score=26.39 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS 161 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~ 161 (439)
+....+.+..+|..+++.|+++.|..++.....+.++.
T Consensus 42 ~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 42 TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34456788999999999999999999999998877664
No 241
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=48.44 E-value=21 Score=28.90 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHH
Q 013640 343 ARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIV 379 (439)
Q Consensus 343 aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv 379 (439)
-|......|+.... +++..+|+.+|||..=+-++|.
T Consensus 7 ~R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 7 ERTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 36666777888777 9999999999999988877763
No 242
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=48.43 E-value=39 Score=28.77 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 341 ENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 341 e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
-..|.+++-..-. .. +++.||+++|+|+..+++.+..|-+.|=+...=. +|-....+++
T Consensus 10 yAl~~L~~La~~~--~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG--~GGy~Lar~p 68 (145)
T 1xd7_A 10 VAIHILSLISMDE--KT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG--VPGASLKKDP 68 (145)
T ss_dssp HHHHHHHHHHTCS--CC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS--SSSCEESSCG
T ss_pred HHHHHHHHHHhCC--CC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC--CCCceecCCH
Confidence 3556666554332 24 9999999999999999999999999998765443 4556666666
No 243
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=48.20 E-value=2.3e+02 Score=28.53 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=61.2
Q ss_pred HhcCC-ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc---c-cchhHHHHHHHHHHHHh-hcCHHHHHHHHHHHH
Q 013640 119 DRYQI-GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT---N-SERRLSALWGKMAAEIL-MQNWDIALEELNQLK 192 (439)
Q Consensus 119 ~~~g~-t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~---~-~~~k~~~lwg~la~eIl-~~~w~~a~~~l~klk 192 (439)
+-+|- -+.+...+..+|..|.+.|+|++|.+++........ + ........+..|+.--. .++++.|..-+.++-
T Consensus 330 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 330 SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 44553 467888999999999999999999998877655422 2 22233344444444433 578999999999999
Q ss_pred HHhcCCCCCCChHH
Q 013640 193 EKVDDPKSFTSPLN 206 (439)
Q Consensus 193 e~id~~~~~~~~l~ 206 (439)
++....-+-.||..
T Consensus 410 ~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 410 AIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTCTTCHHH
T ss_pred HHHHHHcCCCChHH
Confidence 98887433356643
No 244
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=47.61 E-value=49 Score=30.65 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
+....+.+..|..|..--..+-..+ +...||+.||||..=+-+-|..|..+|-+..+ .-.|+.+...+.
T Consensus 10 ~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~~ 79 (243)
T 2wv0_A 10 PIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSKPKM 79 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeCCcc
Confidence 5667888899999998888999999 89999999999999999999999999988643 456888865443
No 245
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=47.54 E-value=53 Score=26.48 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=38.0
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
-+..++...||+.+|+|+.-+-+.|-+|...|=+.-..|...+.
T Consensus 45 ~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 45 CAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 36789999999999999999999999999999887766665544
No 246
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=47.36 E-value=23 Score=30.67 Aligned_cols=44 Identities=20% Similarity=0.213 Sum_probs=38.1
Q ss_pred hhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc---ceeeccc
Q 013640 351 YCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL---DAKIDAK 394 (439)
Q Consensus 351 ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL---~aKID~~ 394 (439)
.++-..+++...||+++|+|+..+-+-|-+|...|-+ .|.+|..
T Consensus 11 ~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 4456788999999999999999999999999999965 4778865
No 247
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=47.13 E-value=46 Score=26.90 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=36.8
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
-+..++...||+.+|+|+.-+-+.|-+|...|-+.-.-|..++
T Consensus 42 ~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 42 KDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 3678999999999999999999999999999988766654443
No 248
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=47.06 E-value=68 Score=29.56 Aligned_cols=76 Identities=7% Similarity=0.061 Sum_probs=52.6
Q ss_pred HHHHHhcC-CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHH-HHHhhcCHHHHHHHHHHHH
Q 013640 115 QMLHDRYQ-IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMA-AEILMQNWDIALEELNQLK 192 (439)
Q Consensus 115 ~~l~~~~g-~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la-~eIl~~~w~~a~~~l~klk 192 (439)
..+++-.. +.|+.....+.+|.++...|+++.|.+.+.......+... +..|-.++ +..-.++++.|.+...++.
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT---HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc---cHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34455555 5777788999999999999999999999998887544322 12444433 2334577888877666664
Q ss_pred H
Q 013640 193 E 193 (439)
Q Consensus 193 e 193 (439)
+
T Consensus 162 ~ 162 (308)
T 2ond_A 162 E 162 (308)
T ss_dssp T
T ss_pred h
Confidence 4
No 249
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=46.46 E-value=42 Score=27.73 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=40.0
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCchhHHH
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQ 410 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~~~yqq 410 (439)
.-...+++..||+.+|+|+.-+-+.|-+|...|-+.-. ..+.+..+......+..
T Consensus 18 ~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGKR 72 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHHH
Confidence 34578999999999999999999999999998877543 22455554333333333
No 250
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=46.13 E-value=48 Score=27.16 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=34.8
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
-+..++...||+.+|+++.-+=+.|-+|...|=+.-.-|...+
T Consensus 47 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 3789999999999999999999999999999988766655544
No 251
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.02 E-value=14 Score=28.73 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=26.2
Q ss_pred HHHHhhhhhcc---ccHHHHHHHcCCCHHHHHHHHHHH
Q 013640 347 IFETYCRIHQR---IDMAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 347 ife~ycriy~~---I~I~~lA~~l~~s~~~~E~wiv~l 381 (439)
+++.|-..-.. -.|..||+.+|++.+.+..|..|-
T Consensus 19 ~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNr 56 (71)
T 2da7_A 19 VLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQR 56 (71)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhc
Confidence 44445433333 348899999999999999999984
No 252
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=45.85 E-value=93 Score=25.14 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=38.3
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
+..++...||+.+|+|+.-+-+.|-+|...|=+.-.-|..++..
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~ 88 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRA 88 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCce
Confidence 67899999999999999999999999999998877766655543
No 253
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=45.48 E-value=36 Score=29.88 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 337 DEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 337 ~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
..|--..|.+++-..- +-..++++.||+++|+|+..+++-+..|-+.|=+... =-.+|=....+++
T Consensus 9 ~k~~yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar~p 74 (162)
T 3k69_A 9 LDFSVAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT-VGKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE-CSTTCEEECCSCG
T ss_pred HHHHHHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee-cCCCCCeEecCCh
Confidence 3455567777766653 3467999999999999999999999999999976543 2234556666666
No 254
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=45.11 E-value=48 Score=26.72 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=38.3
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
+..++...||+.+|+|+.-+-+.|-+|...|=+.-.-|...+..
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~ 84 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRR 84 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcee
Confidence 68899999999999999999999999999998877666655543
No 255
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=44.55 E-value=22 Score=30.14 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=39.2
Q ss_pred HHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc---eeeccc
Q 013640 346 FIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD---AKIDAK 394 (439)
Q Consensus 346 ~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~---aKID~~ 394 (439)
.|+. .++-..+++...||+++|+|+.-+-+.|-+|...|-+. |.+|..
T Consensus 13 ~il~-~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 13 QLVK-ILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHH-HHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 4443 45567899999999999999999999999999999664 556654
No 256
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=44.41 E-value=27 Score=33.78 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHH-HHHhhcCHHHHHHHHHHH
Q 013640 114 LQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMA-AEILMQNWDIALEELNQL 191 (439)
Q Consensus 114 ~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la-~eIl~~~w~~a~~~l~kl 191 (439)
...+++-..+.+....+.+.+|..+...|+|++|.+++........++.......+..-. .....++++.|.+...+.
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
No 257
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=43.91 E-value=53 Score=31.08 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=58.1
Q ss_pred cccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 333 VPLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 333 ~~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
.+....+.+..|..|..--..+-..+ +...||++||||..-+-+-|..|..+|-|..+ .-.|+.+...+.
T Consensus 28 ~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~~ 98 (272)
T 3eet_A 28 QPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR--SGSGTYVRERPV 98 (272)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CC--EEECCCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCceEEEecCCc
Confidence 35667888899999998888999999 99999999999999999999999999987543 456888876553
No 258
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=43.81 E-value=40 Score=27.57 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=34.7
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
-+..+++..||+.+|+++.-+-+.|-+|...|=+.-+-|...+
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~ 90 (143)
T 3oop_A 48 ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDR 90 (143)
T ss_dssp HHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----C
T ss_pred HcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccC
Confidence 3488999999999999999999999999999988766554433
No 259
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.75 E-value=36 Score=28.87 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc---ceeeccc
Q 013640 345 LFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL---DAKIDAK 394 (439)
Q Consensus 345 ~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL---~aKID~~ 394 (439)
..++. .+.-..+++...||+++|+|+.-+-+.|-+|...|-+ .|.+|..
T Consensus 10 ~~il~-~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 10 KKIIK-ILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHH-HHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 34443 4455679999999999999999999999999999966 4566653
No 260
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=43.73 E-value=86 Score=24.32 Aligned_cols=66 Identities=12% Similarity=-0.033 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 013640 126 DQIEALYQYAKFQFECGN---YSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 126 e~~~al~~~ak~~y~~Gd---y~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~ 194 (439)
+.-+.++.+|..+|-.|+ .+.|..+|......-+ ...+-..++|..+. ..++++.|.+...++-+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~--~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHF--ISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhh
Confidence 345688899999986666 7999999988888544 34455566666554 489999998887776543
No 261
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=43.50 E-value=57 Score=29.35 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+..+...+..|..|..--++|=.++....||+.||||..=+-.-|..|-..|=+. +-.-.|+++...
T Consensus 16 ~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~--~~~~~G~~V~~~ 82 (222)
T 3ihu_A 16 SASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVD--LQRHRGAVIRRL 82 (222)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--ECSTTCEEECCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE--EecCCCeEEecC
Confidence 4668889999999999999999999999999999999999999999999999884 446678888653
No 262
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=43.44 E-value=35 Score=28.29 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 345 LFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 345 ~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
..|.. .+....+++...||+++|+|+.-+-+-|-+|...|-+.
T Consensus 7 ~~il~-~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 7 KIILE-ILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHH-HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 34444 45567789999999999999999999999999999764
No 263
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=43.16 E-value=44 Score=30.90 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 333 VPLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 333 ~~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
.+....+.+..|..|..--+.+-..+ +...||++||||..-+-+-|..|..+|-+..+ +-.|+.+...+.
T Consensus 8 ~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~~ 78 (236)
T 3edp_A 8 KPLFEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPKLT 78 (236)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccCcc
Confidence 35667888888999988888899999 89999999999999999999999999988544 567888876644
No 264
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=43.05 E-value=1.1e+02 Score=28.33 Aligned_cols=78 Identities=13% Similarity=-0.063 Sum_probs=54.2
Q ss_pred hcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc----hhHHHHHHHH-HHHHhhcCHHHHHHHHHHHHHH
Q 013640 120 RYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE----RRLSALWGKM-AAEILMQNWDIALEELNQLKEK 194 (439)
Q Consensus 120 ~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~----~k~~~lwg~l-a~eIl~~~w~~a~~~l~klke~ 194 (439)
..|-......++..+|..+...|+|+.|.+++..........+ ......+..+ .+-...++++.|...+.+.-++
T Consensus 85 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 85 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3453444566788999999999999999999998887764322 1122222222 2335568999999999888777
Q ss_pred hcC
Q 013640 195 VDD 197 (439)
Q Consensus 195 id~ 197 (439)
...
T Consensus 165 ~~~ 167 (373)
T 1hz4_A 165 LSS 167 (373)
T ss_dssp TTT
T ss_pred hhc
Confidence 665
No 265
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=42.64 E-value=33 Score=27.66 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce
Q 013640 340 LENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA 389 (439)
Q Consensus 340 ~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a 389 (439)
....|..|+....+ ..+++..+|+.+|+|+.-+-+.|-.|...|-+.-
T Consensus 30 ~~~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~ 77 (119)
T 2lkp_A 30 ATPSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVG 77 (119)
T ss_dssp CCHHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEE
T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 33457777777665 5799999999999999999999999999887643
No 266
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=42.59 E-value=43 Score=27.38 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=36.3
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
..++...||+.+|+++.-+=+.|-+|...|=+.-+-|..++.
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 93 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDER 93 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 789999999999999999999999999999887665555443
No 267
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.18 E-value=49 Score=27.03 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE 162 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~ 162 (439)
.+..+.+-|+=+|+.|||+.|+.++.....++.+..
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~ 87 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSDNEE 87 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHH
Confidence 456889999999999999999999999988877643
No 268
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=42.07 E-value=68 Score=29.82 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 333 VPLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 333 ~~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
.+....+.+..|..|. . ..+-..+ +...||+.||||..=+-+-|..|..+|-|.. .-.|+.+...+.
T Consensus 13 ~~~y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~~~ 80 (248)
T 3f8m_A 13 ILKHQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARPKI 80 (248)
T ss_dssp -CHHHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCCCE
T ss_pred CCHHHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccCcc
Confidence 3566788888888888 6 8999999 9999999999999999999999999998853 677888876543
No 269
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=41.79 E-value=1.5e+02 Score=25.87 Aligned_cols=87 Identities=9% Similarity=0.129 Sum_probs=56.9
Q ss_pred ChhHHHHhhhcchhccHHHHHHhcCCChhHHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhhccccchhHHHHHHHHHH
Q 013640 98 NPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECG---NYSGAADYLYQYRALCTNSERRLSALWGKMAA 174 (439)
Q Consensus 98 ~~e~~~~l~~~dk~~n~~~l~~~~g~t~e~~~al~~~ak~~y~~G---dy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~ 174 (439)
+|+....+++ ++.++--. ++...++.+.||-.+...+ +...+..+|....... ++..+-+++.-.=..
T Consensus 10 ~~~~l~~~~~-------~y~~e~~~-~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 10 SVEDLLKFEK-------KFQSEKAA-GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 80 (152)
T ss_dssp CHHHHHHHHH-------HHHHHHHT-TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-------HHHHHHcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHH
Confidence 4455555554 44333221 4456789999999999988 6668888888777643 123455665544444
Q ss_pred HHhhcCHHHHHHHHHHHHH
Q 013640 175 EILMQNWDIALEELNQLKE 193 (439)
Q Consensus 175 eIl~~~w~~a~~~l~klke 193 (439)
-.-..|.+.|.+.++++-+
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHh
Confidence 4667899999888777654
No 270
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=41.71 E-value=33 Score=36.44 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=47.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQL 191 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~kl 191 (439)
+.+++-..+.|+..++++.+|..+...|+|++ .+++.....+-++. ..++++.=.+-...++++.|.+...++
T Consensus 488 ~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 488 KHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV---ISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34445455566667788888888888888888 87777776654432 234444444455567888777665544
No 271
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=41.41 E-value=61 Score=26.98 Aligned_cols=43 Identities=5% Similarity=0.112 Sum_probs=32.7
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
+..++...||+.+|++..-+-+.|-+|...|=+.-+-|...+.
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCC
Confidence 6789999999999999999999999999999876555544443
No 272
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.36 E-value=1.2e+02 Score=24.28 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=38.0
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
-+..+++..||+.+|+|+.-+-+.|-+|...|=+.-..|..++..
T Consensus 47 ~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 47 QQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 357899999999999999999999999999998876666555443
No 273
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=41.25 E-value=27 Score=30.07 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc---eeeccc
Q 013640 346 FIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD---AKIDAK 394 (439)
Q Consensus 346 ~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~---aKID~~ 394 (439)
.++. +++-..+++...||+++|+|+.-+-+.|-+|...|-+. +.+|..
T Consensus 14 ~il~-~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 14 KILQ-VLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHH-HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 3443 44557789999999999999999999999999999764 566654
No 274
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=40.99 E-value=85 Score=26.72 Aligned_cols=62 Identities=8% Similarity=0.093 Sum_probs=40.9
Q ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC---EEEeCCCCchhHHHHHH
Q 013640 352 CRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG---TVIMEPTHPNVYEQLID 413 (439)
Q Consensus 352 criy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g---~V~~~~~~~~~yqqvi~ 413 (439)
.+-...+++..||+.+|++..-+=+.|-+|...|=+.-.-|...+ .|..+..-...++++..
T Consensus 63 ~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 127 (166)
T 3deu_A 63 HQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEE 127 (166)
T ss_dssp HHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 333567999999999999999999999999999988766654444 34443333334444333
No 275
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=40.93 E-value=54 Score=30.11 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+..+...+..|..|..--++|=.+++...||+.||||..=+-.-|..|-..|-+. +-+-.|+++...
T Consensus 28 ~~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~--~~~~~G~~V~~~ 94 (239)
T 2hs5_A 28 SRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVA--HELNRGVFVRVP 94 (239)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--EETTTEEEECCC
T ss_pred cHHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE--EeCCCeeEEeCC
Confidence 3557888999999999999999999999999999999999999999999999884 446678887653
No 276
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=40.92 E-value=72 Score=26.07 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=40.0
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCchhHHHH
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQL 411 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~~~yqqv 411 (439)
+....+++..||+.+|+|..-+-+-|-+|...|-+.-. . +.+..+.........+
T Consensus 27 ~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 27 DSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWITNNGTRSINYL 81 (139)
T ss_dssp TTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEECHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEEChhHHHHHHHH
Confidence 45678999999999999999999999999999866432 2 4555544333333333
No 277
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=40.75 E-value=2.1e+02 Score=25.87 Aligned_cols=76 Identities=8% Similarity=0.062 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccch-hHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHhcCCCC
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSER-RLSALWGKMAAEIL--MQNWDIALEELNQLKEKVDDPKS 200 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~-k~~~lwg~la~eIl--~~~w~~a~~~l~klke~id~~~~ 200 (439)
.+....+.+.+..+++.|+|+.|.+++............ ..-+.|-..-..+. .++++.|.+...++-++..+.++
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence 334456677789999999999999999998886543322 22233433222233 34889999988888775444333
No 278
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=40.71 E-value=29 Score=29.26 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.9
Q ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc---eeeccc
Q 013640 352 CRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD---AKIDAK 394 (439)
Q Consensus 352 criy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~---aKID~~ 394 (439)
++-..+++...||+++|+|+.-+-+.|-+|...|-+. +.+|..
T Consensus 14 L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 14 LKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 3456789999999999999999999999999999764 556755
No 279
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=40.70 E-value=58 Score=26.30 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=34.6
Q ss_pred cccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 357 RIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 357 ~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
.+++..||+.+|+|+.-+-+.|-+|...|=+.-.-|...+
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 7999999999999999999999999999988665554443
No 280
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=40.67 E-value=73 Score=28.52 Aligned_cols=67 Identities=12% Similarity=0.295 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+..+...+..|..|..--++|=.+++...||+.||||..=+-.-|..|-..|-+..+ .-.|+++...
T Consensus 12 ~l~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~~ 78 (218)
T 3sxy_A 12 LVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTDV 78 (218)
T ss_dssp --CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECCC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcCC
Confidence 456788899999999999999999999999999999999999999999999988543 6678887653
No 281
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=40.46 E-value=33 Score=28.18 Aligned_cols=46 Identities=9% Similarity=0.069 Sum_probs=30.6
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
.-+..++...||+.+|+|+.-+=+.|-+|...|=+.-.-|..++..
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~ 92 (142)
T 3ech_A 47 DEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRS 92 (142)
T ss_dssp HHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC---------
T ss_pred HhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCe
Confidence 3457899999999999999999999999999998876666555543
No 282
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.31 E-value=32 Score=27.26 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
.++.+...|-+.+ ...++++.||+.+|||+.-+.+.+-.
T Consensus 3 ~i~~~~~~i~~~~---~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 3 AVRQVEEYIEANW---MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHHT---TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4556666666665 35699999999999998887776643
No 283
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=39.88 E-value=1e+02 Score=27.08 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHhcCCChhHHHHHHHHHHHHHhcCChh----------hHHHHHHHHHhhccc
Q 013640 118 HDRYQIGPDQIEALYQYAKFQFECGNYS----------GAADYLYQYRALCTN 160 (439)
Q Consensus 118 ~~~~g~t~e~~~al~~~ak~~y~~Gdy~----------~A~~~L~~~~~~~~~ 160 (439)
++...+.|+..++++.+|..+.+.|+++ +|...+.....+-++
T Consensus 26 ~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 26 ENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 3444456667778888888888888764 888888777776554
No 284
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=39.85 E-value=80 Score=25.84 Aligned_cols=41 Identities=10% Similarity=0.213 Sum_probs=35.5
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeeccc
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAK 394 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~ 394 (439)
.+..++...||+.+|++..-+-+.|-+|...|=+.-.-|..
T Consensus 51 ~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~ 91 (152)
T 3bj6_A 51 LTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPE 91 (152)
T ss_dssp HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcc
Confidence 45689999999999999999999999999999886555543
No 285
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=39.79 E-value=66 Score=27.32 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=37.5
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
+..+++..||+.+|++..-+=+.|-+|...|=+.-..|..++.
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 99 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRR 99 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 5789999999999999999999999999999887766655443
No 286
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=39.40 E-value=44 Score=27.45 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=33.3
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
.-+..++...||+.+|+++.-+-+.|-+|...|=+.-.-|...+
T Consensus 50 ~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 50 SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 34669999999999999999999999999999877655554443
No 287
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=39.10 E-value=54 Score=23.30 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhcccc----HHHHHHHcCCCHHHHHHHHH
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRID----MAVLAEKLNLNYEEAQRWIV 379 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~----I~~lA~~l~~s~~~~E~wiv 379 (439)
.+..+|-..+ ...+ +. ..+ +..+|..|||++.-+-+|+-
T Consensus 5 ~ys~efK~~~-~~~~----~~--g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 5 IFTPHFKLQV-LESY----RN--DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCHHHHHHH-HHHH----HH--CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCHHHHHHH-HHHH----Hc--CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3557776666 3332 22 335 89999999999999999985
No 288
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=38.76 E-value=55 Score=26.50 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=35.4
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
..+++..||+.+|+|+.-+-+.|-+|...|=+.-.-|...+.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R 87 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTR 87 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--C
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCC
Confidence 389999999999999999999999999999887666655443
No 289
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=38.74 E-value=1.4e+02 Score=23.52 Aligned_cols=51 Identities=10% Similarity=0.155 Sum_probs=41.3
Q ss_pred HHHHHHHhhhhhccccHHHHHHHc-CCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKL-NLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l-~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
|..|..... ...++...||+.+ |+|+.-+=+-|-+|...|=+..+.|...+
T Consensus 16 ~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 16 KXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp HHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred HHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 444544443 5779999999999 99999999999999999999877776544
No 290
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=38.41 E-value=46 Score=28.03 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=34.6
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
+..+++..||+.+|+++.-+=+.|-+|...|=+.-+-|...+
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~Dr 106 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQ 106 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccC
Confidence 578999999999999999999999999999988766554443
No 291
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=38.08 E-value=87 Score=24.54 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcccee
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAK 390 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aK 390 (439)
+-...|+.|+...++ +...+...||+.+|+|+.-+-+-|..|-.. -+..+
T Consensus 24 L~~~~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 24 MAHPMRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp HCSHHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEE
T ss_pred hCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhhe
Confidence 334567777765553 577999999999999999999999998777 55544
No 292
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=37.99 E-value=2.1e+02 Score=25.13 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHH-h----hcCHHHHHHHHHHHHH
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEI-L----MQNWDIALEELNQLKE 193 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eI-l----~~~w~~a~~~l~klke 193 (439)
..++++.+|..++..|+++.|.+++..... .++ . .+ |..++.-. . .++++.|.+...++-+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~-~--~a-~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 70 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKE-N--SG-CFNLGVLYYQGQGVEKNLKKAASFYAKACD 70 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTC-H--HH-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC-H--HH-HHHHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence 356889999999999999999999887766 211 1 22 22222222 2 5788888887777654
No 293
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=37.87 E-value=1.4e+02 Score=25.02 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=46.1
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE---EEeCCCCchhHHHHHHhhh
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT---VIMEPTHPNVYEQLIDHTK 416 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~---V~~~~~~~~~yqqvi~kt~ 416 (439)
+.-..++...||+.+|+++.-+=+.|-+|...|=+.-.-|...+. |..+..-...+.++.....
T Consensus 42 ~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 108 (151)
T 4aik_A 42 RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVIS 108 (151)
T ss_dssp HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999888777777663 3333333344554444433
No 294
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=37.80 E-value=50 Score=27.65 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=36.1
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCE
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGT 397 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~ 397 (439)
+..++...||+.+|+++.-+-+.|-+|...|=+.-+-|...+.
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 104 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRR 104 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---C
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCC
Confidence 5789999999999999999999999999999887776665553
No 295
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=37.72 E-value=51 Score=27.76 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc---ceeeccc
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL---DAKIDAK 394 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL---~aKID~~ 394 (439)
+..|.. ++.-..+++...||+++|+|+.-+-+.|-+|...|-+ .+.+|..
T Consensus 9 ~~~iL~-~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 9 DRILVR-ELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHH-HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 334444 3455678999999999999999999999999999976 3566765
No 296
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=37.42 E-value=38 Score=28.06 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=35.1
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce--eecccCC
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA--KIDAKSG 396 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a--KID~~~g 396 (439)
+..++...||+.+|+++.-+-+.|-+|...|=+.- +-|...+
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~ 96 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDS 96 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCC
Confidence 57799999999999999999999999999998876 5555544
No 297
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=37.32 E-value=64 Score=29.71 Aligned_cols=67 Identities=9% Similarity=0.104 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCC
Q 013640 335 LRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT 403 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~ 403 (439)
....+.+..|..|...-..+-..+ +...||+.||||..=+-+-|..|..+|-+..+ .-.|+.+...+
T Consensus 6 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~--~g~G~~V~~~~ 73 (239)
T 3bwg_A 6 KYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV--RGSGIFVRKHK 73 (239)
T ss_dssp --CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--CCceEEEecCc
Confidence 445677788888888788999999 89999999999999999999999999988543 55688776543
No 298
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=36.98 E-value=67 Score=28.08 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=39.0
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
+...+++..||+.+|+|+.-+=+-|-+|...|=+.-.-|...+..
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~ 98 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRA 98 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSC
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCe
Confidence 467899999999999999999999999999998887777665543
No 299
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=36.84 E-value=47 Score=26.68 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRAL 157 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~ 157 (439)
.++..+.++=|++|++.||+.+|...+.....+
T Consensus 36 l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~Gw 68 (87)
T 2pmr_A 36 VERALNYRDDSVYYLEKGDHITSFGCITYAHGL 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357788899999999999999999877665544
No 300
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=36.74 E-value=58 Score=31.25 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcccee
Q 013640 343 ARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAK 390 (439)
Q Consensus 343 aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aK 390 (439)
.|+++-..++.-+..++...||++||||..-+-|.|..+=..|.+.=+
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ir 54 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIA 54 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 455555666666788999999999999999999999999777766433
No 301
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.69 E-value=64 Score=24.20 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhhh-ccccHHHHHHHc-----CCCHHHHHHHHHHHhhcCccc
Q 013640 342 NARLFIFETYCRIH-QRIDMAVLAEKL-----NLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 342 ~aR~~ife~ycriy-~~I~I~~lA~~l-----~~s~~~~E~wiv~lI~~~rL~ 388 (439)
.-|..|++.+.+.. ..+++..|++.| ++|..-+=+-|-.|...|-+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 35777888776654 689999999999 999999999999999999876
No 302
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=36.55 E-value=10 Score=32.49 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 337 DEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 337 ~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
++.++++...|.+.| +.|..+.+ -+|++||+|.++++..+++
T Consensus 4 ~e~~~~MK~ril~S~-~w~edvii-PlSk~lgis~ee~~~I~~~ 45 (126)
T 1nxh_A 4 GELMRLMKRRILESY-RWQEDVVK-PLSRELEIDVEEFQDILMD 45 (126)
T ss_dssp THHHHHHHHHHHTSH-HHHHHTTT-TTTTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-hHHHHHHH-HHHHHhCcCHHHHHHHHHH
Confidence 467889999999988 77777765 4899999999999988875
No 303
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=36.47 E-value=40 Score=24.14 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=25.6
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
+...+.+.+|+.+|+|+.-+.+++.+...
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46789999999999999999999988755
No 304
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=36.31 E-value=70 Score=25.96 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=36.8
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
-+..++...||+.+|+|+.-+-+.|-+|...|=+.-.-|...+
T Consensus 40 ~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 40 ENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 3568999999999999999999999999999988766655443
No 305
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=36.26 E-value=56 Score=29.53 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
+..+...+..|-.|..--++|=.++ +-..||+.||||..=+-.-|..|...|-+.. -+-.|+.+..
T Consensus 7 ~~~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~~ 73 (239)
T 1hw1_A 7 SPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVNN 73 (239)
T ss_dssp SHHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEECC
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEeeC
Confidence 3557788889999999888999999 8999999999999999999999999998853 3566888864
No 306
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=36.22 E-value=2.1e+02 Score=24.66 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=37.0
Q ss_pred chhccHHHHHHhcCCCh--hHHHHHHHHHHHHHh----cCChhhHHHHHHHHHhh
Q 013640 109 DQHYNLQMLHDRYQIGP--DQIEALYQYAKFQFE----CGNYSGAADYLYQYRAL 157 (439)
Q Consensus 109 dk~~n~~~l~~~~g~t~--e~~~al~~~ak~~y~----~Gdy~~A~~~L~~~~~~ 157 (439)
|-..-+.++++-....+ ...++.+.+|.+|.+ .+|++.|.+++.....+
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44444566666655555 457899999999999 88999999988887765
No 307
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=35.99 E-value=52 Score=26.93 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=35.7
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccC
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKS 395 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~ 395 (439)
.-+..++...||+.+|+++.-+-+.|-+|...|=+.-.-|...
T Consensus 41 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D 83 (145)
T 3g3z_A 41 ATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQD 83 (145)
T ss_dssp HHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSC
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCC
Confidence 3456799999999999999999999999999997765544433
No 308
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=35.98 E-value=3.2e+02 Score=26.64 Aligned_cols=175 Identities=10% Similarity=0.053 Sum_probs=92.5
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHH-hhc-CHHHHHHHHHHHHHHhcCCC
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEI-LMQ-NWDIALEELNQLKEKVDDPK 199 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eI-l~~-~w~~a~~~l~klke~id~~~ 199 (439)
.++++..++++.+|.++...|+|+.|.+.+..+..+.++.. ..|..++.-. ..+ +++.|.+...++-++-.+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-- 164 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-- 164 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--
Confidence 46888999999999999999999999999999888665432 2333333322 245 499998888777553222
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCccchHHHHHHhc-cccchhHHHhhchhHHHHHHHHHHHhcccccchHHHHHHHh
Q 013640 200 SFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFN-QDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQ 278 (439)
Q Consensus 200 ~~~~~l~~l~~R~WllHwsLf~~fn~~~~~~~l~d~F~-~~~yl~~Iqt~~p~lLrYlvva~il~~~r~~~l~~i~~vi~ 278 (439)
+ ...+..|.|+.. ..=++.++...+-.... +| ..++...++..+..-.++-...+..+-+++.
T Consensus 165 ---~-~~a~~~~g~~~~----~~g~~~eAl~~~~kal~ldP--------~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 165 ---N-YQVWHHRRVLVE----WLRDPSQELEFIADILNQDA--------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp ---C-HHHHHHHHHHHH----HHTCCTTHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred ---C-HHHHHHHHHHHH----HccCHHHHHHHHHHHHHhCc--------cCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 234445555431 12223333222211111 22 2334445555544444433455555566666
Q ss_pred hhccCCcchHHHHHHHhhhcCCh-hHHH--HHHHHHHHHhcCCc
Q 013640 279 QEQNSYKDPITEFLACVYVNYDF-DGAQ--KKMKECEEVILNDP 319 (439)
Q Consensus 279 qe~~~Y~Dpit~f~~~lY~~fdF-~~aq--~~L~~~e~~i~~D~ 319 (439)
.. +...+....+-.++..--.+ ++|. ..+.-++..|.-|+
T Consensus 229 l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P 271 (382)
T 2h6f_A 229 ED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 271 (382)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST
T ss_pred hC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC
Confidence 53 22223344444333331333 5552 22444555554443
No 309
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=35.55 E-value=49 Score=27.66 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=31.0
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCc-cc
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSK-LD 388 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~r-L~ 388 (439)
+..+++.+|+.-|++...++..|+.++..|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 7899999999999999999999999999995 64
No 310
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=35.46 E-value=59 Score=25.24 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcC
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNS 385 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~ 385 (439)
|..+...|+.. ...++..+|..||||+.-+-+|+-.+-..|
T Consensus 11 k~~~v~~~~~~-~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 11 KRDAVALYENS-DGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHTTG-GGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 33444444431 257899999999999999999998874433
No 311
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=35.35 E-value=12 Score=31.41 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+..+...+..|..|..--+.+=..+ +...||+.||||..=+-+-+..|...|-+..+ .-.|+.+...
T Consensus 11 ~~~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~~ 78 (126)
T 3ic7_A 11 AIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVASG 78 (126)
T ss_dssp -CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECTT
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEccC
Confidence 5567888999999999889999999 99999999999999999999999999988543 5678877543
No 312
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=35.31 E-value=1.1e+02 Score=31.55 Aligned_cols=82 Identities=11% Similarity=0.081 Sum_probs=57.2
Q ss_pred HHHHHHhcCC-ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc---ccc----hhHHHHHHHHHHHHhhcCHHHHH
Q 013640 114 LQMLHDRYQI-GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCT---NSE----RRLSALWGKMAAEILMQNWDIAL 185 (439)
Q Consensus 114 ~~~l~~~~g~-t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~---~~~----~k~~~lwg~la~eIl~~~w~~a~ 185 (439)
++..++.+|- -|++..++..+|.+|...|+|++|..++........ +.+ ..+..+.+....|.-++ ..|.
T Consensus 378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~--~~ae 455 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF--RQNE 455 (490)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3444566774 578889999999999999999999999887665422 222 22445666666666554 4677
Q ss_pred HHHHHHHHHhcC
Q 013640 186 EELNQLKEKVDD 197 (439)
Q Consensus 186 ~~l~klke~id~ 197 (439)
....++|+--.+
T Consensus 456 ~~~~~~~~~~~~ 467 (490)
T 3n71_A 456 FMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 777888876654
No 313
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=35.31 E-value=74 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL 387 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL 387 (439)
|..|..-+. ...++..+|+.||+|..-+-+|+-++-..|.+
T Consensus 23 r~~i~~~~~---~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~ 63 (128)
T 1pdn_C 23 RLKIVEMAA---DGIRPCVISRQLRVSHGCVSKILNRYQETGSI 63 (128)
T ss_dssp HHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCc
Confidence 444544442 56789999999999999999999998776654
No 314
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=35.23 E-value=52 Score=26.39 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 013640 125 PDQIEALYQYAKFQFECGNYSGAADYLYQYRAL 157 (439)
Q Consensus 125 ~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~ 157 (439)
.++..+.++=|++|++.||+.+|...+.....+
T Consensus 32 l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~Gw 64 (86)
T 2oo2_A 32 MRNIEAYISDSRYFLEKGDLVRAFECVVWAWAW 64 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356778899999999999999999877665544
No 315
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=35.21 E-value=1.3e+02 Score=25.17 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=31.0
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA 389 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a 389 (439)
...++...||+.||+|..-+-+-|-+|...|-+..
T Consensus 52 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r 86 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEM 86 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEE
Confidence 46789999999999999999999999999886643
No 316
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=35.12 E-value=54 Score=27.58 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=39.2
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
.-+..+++..||+.+|+++.-+=+.|-+|...|=+.-.-|...+..
T Consensus 56 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~ 101 (162)
T 3k0l_A 56 AAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRR 101 (162)
T ss_dssp HHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCC
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCe
Confidence 3457899999999999999999999999999998887776665543
No 317
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=34.86 E-value=61 Score=26.77 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=34.5
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
-+..++...||+.+|+|..-+-+.|-+|...|=+.-..|...+
T Consensus 58 ~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 58 ETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred hCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 3678999999999999999999999999999988766554443
No 318
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=34.81 E-value=87 Score=28.44 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=58.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHcCCCHHHHHHHHHHHhhcCccceeeccc--CCEEEeCCCC
Q 013640 335 LRDEFLENARLFIFETYCRIHQRI-DMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAK--SGTVIMEPTH 404 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I-~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~--~g~V~~~~~~ 404 (439)
..+...+..|-.|..--++|=.++ +-..||+.||||..=+-.-|..|-..|-+..+--+- .|+++...+.
T Consensus 5 l~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~~ 77 (239)
T 2di3_A 5 AHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAPG 77 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCcc
Confidence 457788899999999999999999 688999999999999999999999999885410345 7888876544
No 319
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=34.75 E-value=52 Score=23.88 Aligned_cols=32 Identities=6% Similarity=0.222 Sum_probs=28.0
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCc
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSK 386 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~r 386 (439)
+...+.+.+|+.+|+|+.-+..++.+.+..-+
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998876433
No 320
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=34.70 E-value=62 Score=26.35 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
+..++. ++..+. ++...||+.+|+|+.-+-+-|.+|...|=+.-.-|..++..
T Consensus 40 ~~~iL~-~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~ 92 (146)
T 3tgn_A 40 QEHILM-LLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARV 92 (146)
T ss_dssp HHHHHH-HHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------
T ss_pred HHHHHH-HHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCce
Confidence 334444 334566 99999999999999999999999999998877666555543
No 321
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=34.52 E-value=39 Score=29.68 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc---eeeccc
Q 013640 346 FIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD---AKIDAK 394 (439)
Q Consensus 346 ~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~---aKID~~ 394 (439)
.|+.. ++-..+++...||+++|+|+.-+-+.|-+|...|-+. |.+|..
T Consensus 21 ~IL~~-L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 21 NILRL-LKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHH-HHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHH-HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 44443 3446789999999999999999999999999999764 667765
No 322
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=34.19 E-value=41 Score=29.54 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc---ceeeccc
Q 013640 343 ARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL---DAKIDAK 394 (439)
Q Consensus 343 aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL---~aKID~~ 394 (439)
.+..|.. .++-..+++...||+++|+|+.-+-+.|-+|...|-+ .|.+|..
T Consensus 28 ~d~~IL~-~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 28 IDKKIIK-ILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHH-HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHH-HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 3344444 3344679999999999999999999999999999976 4567754
No 323
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=34.18 E-value=28 Score=28.19 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCc
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSK 386 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~r 386 (439)
+..+-++.|...++. ..+++..+|.++|||++.+.+|.-.+-+.|.
T Consensus 33 Ws~~~Kl~VV~~~~~--g~~s~~e~arry~Is~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 33 WVASRKAAVVKAVIH--GLITEREALDRYSLSEEEFALWRSAVAAHGE 78 (95)
T ss_dssp CCHHHHHHHHHHHHT--TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCT
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 444455666666654 5678999999999999999999998866663
No 324
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=34.01 E-value=67 Score=24.75 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHH
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~l 381 (439)
.+..+|...+ ...| . ...++..+|+.||||+.-+-+|+-.+
T Consensus 22 ~ys~e~k~~~----v~~~-~--~g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 22 SLTPRDKIHA----IQRI-H--DGESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp SCCHHHHHHH----HHHH-H--HTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHH----HHHH-H--CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445665443 3333 2 45789999999999999999999654
No 325
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.80 E-value=50 Score=27.29 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=36.7
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
.+..+++..||+.+|+|+.-+-+.|-+|...|-+.-.-|...+
T Consensus 48 ~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 48 KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 3678999999999999999999999999999988766555443
No 326
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=33.62 E-value=43 Score=25.92 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=26.2
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
.+...+.+.+|+.||+|..-+...+.+...
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 367789999999999999999999987654
No 327
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=33.50 E-value=2.7e+02 Score=25.05 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhcccc--chhHHHHHHHHHHHHhhcC
Q 013640 124 GPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNS--ERRLSALWGKMAAEILMQN 180 (439)
Q Consensus 124 t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~--~~k~~~lwg~la~eIl~~~ 180 (439)
..+.+.=.|=.|++++--+||.+|.+.|......|+.+ +.+-.++=..+-+.++++.
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~ 68 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH 68 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC
Confidence 44566667889999999999999999999999999864 4456677777778888775
No 328
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.38 E-value=48 Score=24.45 Aligned_cols=29 Identities=7% Similarity=0.130 Sum_probs=25.8
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhc
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRN 384 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~ 384 (439)
...+.+.+|+.+|+|+.-+..++.+.+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRK 57 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999887653
No 329
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=33.37 E-value=55 Score=26.32 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=36.1
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
+..+++..||+.+|+|+.-+-+.|-+|...|=+.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 678999999999999999999999999999988765555443
No 330
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=33.07 E-value=73 Score=26.66 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=37.6
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEE
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVI 399 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~ 399 (439)
.....++...||+.+|+++.-+=+.|-+|...|=+.-.-|...+...
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~ 93 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGT 93 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CE
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCcee
Confidence 44567999999999999999999999999999988877777665433
No 331
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=32.98 E-value=61 Score=26.65 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=27.9
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEe
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIM 400 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~ 400 (439)
..++...||+.+|+++.-+=+.|-+|...|=+.-.-|...+....
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~ 100 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKN 100 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CC
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhhe
Confidence 789999999999999999999999999999887776666555443
No 332
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=32.86 E-value=78 Score=25.71 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
....+-...|..|+.... ....+...||+.+|+|+.-+-+.|..|...|-+..+-|
T Consensus 14 ~~~aL~~~~r~~IL~~L~--~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 14 LGRALADPTRCRILVALL--DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp HHHHHSSHHHHHHHHHHH--TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred HHHHhCCHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 445555677888888655 35688999999999999999999999999888765533
No 333
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=32.81 E-value=81 Score=24.28 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=32.8
Q ss_pred hhhhhc-cccHHHHHHHcCCCHHH-HHHHHHHHhhcCccc
Q 013640 351 YCRIHQ-RIDMAVLAEKLNLNYEE-AQRWIVNLIRNSKLD 388 (439)
Q Consensus 351 ycriy~-~I~I~~lA~~l~~s~~~-~E~wiv~lI~~~rL~ 388 (439)
++.-+. .++...||+.+|+++.- +=+.|-+|...|=+.
T Consensus 23 ~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 334455 79999999999999999 999999999998776
No 334
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=32.60 E-value=1.2e+02 Score=26.30 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcC
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCT----NSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDD 197 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~----~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~id~ 197 (439)
.+.+++-|..|.+.||.+.|--++-.|..+.. .++-+-.. ..+..-+.......+.+.+++||..++.
T Consensus 42 a~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk~~~--~~~k~~l~k~~~~~vl~~lE~LK~~L~~ 113 (144)
T 2a9u_A 42 ALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQ--DYFHSILGPGNIKKAVEEAERLSESLKL 113 (144)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHHHTH--HHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchhhhh--HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999988877666542 12222111 0111111122344678888888888876
No 335
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=32.39 E-value=2.1e+02 Score=23.74 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhhhccccHHHHHHHc-CCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 341 ENARLFIFETYCRIHQRIDMAVLAEKL-NLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 341 e~aR~~ife~ycriy~~I~I~~lA~~l-~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
..-|+.|+.... +...+...||+.+ |+|+.-+=+-|-+|...|=+.-+.|...+
T Consensus 34 ~~w~l~IL~~L~--~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 34 SRWGVLILVALR--DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp SHHHHHHHHHGG--GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred CCcHHHHHHHHH--cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 345556665543 6789999999999 79999999999999999999877776544
No 336
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.38 E-value=1.9e+02 Score=22.99 Aligned_cols=42 Identities=5% Similarity=-0.018 Sum_probs=36.6
Q ss_pred hccccHHHHHHHc-CCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 355 HQRIDMAVLAEKL-NLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 355 y~~I~I~~lA~~l-~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
...++...||+.+ |+|+.-+-+-|-+|...|=+.-..|...+
T Consensus 33 ~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~ 75 (112)
T 1z7u_A 33 QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELP 75 (112)
T ss_dssp HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSS
T ss_pred hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 3679999999999 99999999999999999988877665443
No 337
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=32.31 E-value=93 Score=25.56 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=31.5
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
..++...||+.+|+++.-+=+.|-+|...|=+.-+-|...+..
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~ 95 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRN 95 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC---------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccch
Confidence 4689999999999999999999999999998876666555443
No 338
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=32.01 E-value=43 Score=25.62 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=22.8
Q ss_pred HhhhhhccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 350 TYCRIHQRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 350 ~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
..++.+.+ ...+|+.||||+.-+=+|+-.
T Consensus 5 ~ai~~~G~--~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 5 ELVRHFGD--VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHSS--HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHCC--HHHHHHHHCCCHHHHHHHHhC
Confidence 33444443 899999999999999999854
No 339
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=31.95 E-value=61 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=34.4
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccC
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKS 395 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~ 395 (439)
.-+..++...||+.+|++..-+-+.|-+|...|=+.-..|...
T Consensus 53 ~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d 95 (155)
T 3cdh_A 53 VDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKD 95 (155)
T ss_dssp SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC----
T ss_pred HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCc
Confidence 3467899999999999999999999999999997765544443
No 340
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=31.87 E-value=1.4e+02 Score=25.88 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccc-----cc------hhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 127 QIEALYQYAKFQFECGNYSGAADYLYQYRALCTN-----SE------RRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 127 ~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~-----~~------~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
..+.+++-|..|.+.||.+.|--++-.+..++.. ++ .....+.+++. +.+...+++||..|
T Consensus 39 ta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~--------~~~~~~lE~LK~~L 110 (146)
T 2xze_A 39 SGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLK--------EIAFPKAEELKAEL 110 (146)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHH--------HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHH--------HHhHHHHHHHHHHH
Confidence 3468899999999999999999988887777652 11 22334445544 23677788888877
Q ss_pred cC
Q 013640 196 DD 197 (439)
Q Consensus 196 d~ 197 (439)
++
T Consensus 111 ~~ 112 (146)
T 2xze_A 111 LK 112 (146)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 341
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=31.77 E-value=39 Score=28.08 Aligned_cols=60 Identities=7% Similarity=0.114 Sum_probs=40.3
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC---EEEeCCCCchhHHHHHH
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG---TVIMEPTHPNVYEQLID 413 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g---~V~~~~~~~~~yqqvi~ 413 (439)
-+..++...||+.+|+++.-+=+.|-+|...|=+.-+-|...+ .|..+..-...++++..
T Consensus 52 ~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 114 (149)
T 4hbl_A 52 EENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFE 114 (149)
T ss_dssp HSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHH
Confidence 3588999999999999999999999999999988766555544 34443333344444443
No 342
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=31.55 E-value=86 Score=28.13 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcccee
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAK 390 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aK 390 (439)
....+....|..|+.... ..+++...||+.+|+|+.-+-+-|-.|...|-+...
T Consensus 13 ~~k~l~d~~~~~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 13 VIKVMLEDTRRKILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHSHHHHHHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345556777777777654 578999999999999999999999999999988654
No 343
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=31.33 E-value=65 Score=32.66 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=36.1
Q ss_pred HHHHHHhcCC-ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 013640 114 LQMLHDRYQI-GPDQIEALYQYAKFQFECGNYSGAADYLYQYRAL 157 (439)
Q Consensus 114 ~~~l~~~~g~-t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~ 157 (439)
++..++-+|- -|++...+.++|..|...|+|++|..++......
T Consensus 367 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 367 IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 4445566774 6888899999999999999999999998876654
No 344
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=31.08 E-value=88 Score=26.03 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc
Q 013640 342 NARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL 387 (439)
Q Consensus 342 ~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL 387 (439)
+-|..|..-+. ...++..+|+.||+|..-+-+|+-++-..|.+
T Consensus 36 e~r~~iv~~~~---~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 36 VVRQRIVELAH---QGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78 (149)
T ss_dssp HHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 34555555552 46889999999999999999999998777754
No 345
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=31.06 E-value=1.2e+02 Score=24.05 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL 387 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL 387 (439)
-+..+.-.|++..-..=+-++-..||+++|++..++++-|-+|=.+|++
T Consensus 16 ~~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 16 REGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred ccchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 4566777888888888899999999999999999999999999777654
No 346
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=30.91 E-value=1.1e+02 Score=27.29 Aligned_cols=63 Identities=11% Similarity=0.007 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccc----------------------hhHHHHHHHHHHHHhhcCHHHHH
Q 013640 128 IEALYQYAKFQFECGNYSGAADYLYQYRALCTNSE----------------------RRLSALWGKMAAEILMQNWDIAL 185 (439)
Q Consensus 128 ~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~----------------------~k~~~lwg~la~eIl~~~w~~a~ 185 (439)
.+.++-+|..+|..|+|..|..++......+.... .-.++-+-.-.|-+-.++|+.|+
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 45789999999999999999999998544432110 00245566677788888999888
Q ss_pred HHHHH
Q 013640 186 EELNQ 190 (439)
Q Consensus 186 ~~l~k 190 (439)
..++.
T Consensus 143 ~~Le~ 147 (167)
T 3ffl_A 143 AILDG 147 (167)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77653
No 347
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=30.86 E-value=3.7e+02 Score=25.94 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=42.1
Q ss_pred HHHHHHHHH--HHhcC--ChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Q 013640 129 EALYQYAKF--QFECG--NYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKV 195 (439)
Q Consensus 129 ~al~~~ak~--~y~~G--dy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke~i 195 (439)
..++.+|.. ..-.| +|.+|..++..+....++ -+....+|. |.+.+++|+.|.+.+.++.+..
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 345555544 44445 899997777775443322 123456666 8999999999999998776554
No 348
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=30.66 E-value=1.2e+02 Score=24.77 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcccee
Q 013640 342 NARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAK 390 (439)
Q Consensus 342 ~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aK 390 (439)
..|..|+....+ ...++..||+.+|+|..-+-+-|-.|...|-+...
T Consensus 46 ~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 346777776653 57899999999999999999999999998877654
No 349
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=30.48 E-value=36 Score=27.28 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 337 DEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 337 ~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
+..++.+...|-+.+. ..++++.||+.+|||+.-+.+.+-.
T Consensus 6 ~~~i~~~~~~i~~~~~---~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 6 QPKLTEAVSLMEANIE---EPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp CHHHHHHHHHHHTCSS---SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhc---CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3455555555554443 4599999999999999887776643
No 350
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=30.25 E-value=66 Score=27.74 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeec
Q 013640 334 PLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKID 392 (439)
Q Consensus 334 ~~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID 392 (439)
.....+-...|..|+.... ....+...||+.||+|..-+-+-|..|...|-+..+-|
T Consensus 50 ~~l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 3445667788999998776 57899999999999999999999999999998876644
No 351
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.18 E-value=55 Score=25.15 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=25.8
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
...+.+.+|+.+|+|+.-+..++.+.+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999998765
No 352
>4fye_A SIDF, inhibitor of growth family, member 3; mixed alpha-beta, phosphatase, phosphoinositides, membrane,; 2.41A {Legionella pneumophila subsp} PDB: 4fyf_A 4fyg_A*
Probab=29.86 E-value=1.6e+02 Score=29.67 Aligned_cols=77 Identities=17% Similarity=0.351 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHhhhcchhccHHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHH
Q 013640 72 VERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYL 151 (439)
Q Consensus 72 ~~k~~ev~~~l~~l~~~~~~~~~~~~~~e~~~~l~~~dk~~n~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L 151 (439)
.+....+-..|++|++.++|++ ++-..+||.. -.+-.||-.|.-...|.++.
T Consensus 562 tehkgqinkalqelkeqispvi-------------------------qnketdpetk---srlqhfynscayltqaqely 613 (761)
T 4fye_A 562 TEHKGQINKALQELKEQISPVI-------------------------QNKETDPETK---SRLQHFYNSCAYLTQAQELY 613 (761)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------------TCTTSCHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHhcChhh-------------------------cCCCCChhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777765 1222355532 33445666665555555543
Q ss_pred HHHHhhcccc---chhHHHHHHHHHHHHhhc
Q 013640 152 YQYRALCTNS---ERRLSALWGKMAAEILMQ 179 (439)
Q Consensus 152 ~~~~~~~~~~---~~k~~~lwg~la~eIl~~ 179 (439)
|. .+-.. .-++.-|...|+||+-.-
T Consensus 614 ye---ntwhhgknnfklqtlmaslsceldya 641 (761)
T 4fye_A 614 YE---NTWHHGKNNFKLQTLMASLSCELDYA 641 (761)
T ss_dssp HT---TCTTSGGGTTHHHHHHHHHHHHTTCE
T ss_pred Hh---hhhhccccchhHHHHHHhhccccccc
Confidence 32 22222 346888899999997654
No 353
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=29.82 E-value=86 Score=27.66 Aligned_cols=47 Identities=19% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhhh-ccccHHHHHHHcCCCHHHHHHHHHHHhhcCc-cc
Q 013640 342 NARLFIFETYCRIH-QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSK-LD 388 (439)
Q Consensus 342 ~aR~~ife~ycriy-~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~r-L~ 388 (439)
..|....-.+++-. +.++.+.||++||+|..-+-+.|..|-..|- +.
T Consensus 20 ~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 34555555566643 4599999999999999999999999877765 53
No 354
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=29.66 E-value=83 Score=25.59 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=35.8
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKS 395 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~ 395 (439)
-+..++...||+.+|+|+.-+-+.|-+|...|=+.-..|..+
T Consensus 51 ~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d 92 (147)
T 1z91_A 51 EHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEED 92 (147)
T ss_dssp HHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSC
T ss_pred HCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCC
Confidence 356899999999999999999999999999998866555433
No 355
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.48 E-value=86 Score=24.39 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
+++.+...|-+.|.. ..++++.||+.+|||+.-+.+.+-.
T Consensus 3 ~~~~i~~~i~~~~~~--~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 3 AKELIQNIIEESYTD--SQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHHHHHHTTC--TTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445555555555432 2689999999999999988777643
No 356
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.03 E-value=1.5e+02 Score=24.32 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=36.7
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
-+..+++..||+.+|+|..-+-+.|-+|...|=+.-+-|...+
T Consensus 55 ~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 55 LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 3568999999999999999999999999999988766555443
No 357
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=28.67 E-value=56 Score=27.19 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=33.9
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
.-+..++...||+.+|++..-+-+.|-+|...|=+.-.-|...+
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 44578999999999999999999999999999987655444433
No 358
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.64 E-value=1.3e+02 Score=24.95 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=35.6
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
-+..++...||+.+|++..-+-+.|-+|...|-+.-.-|...+
T Consensus 63 ~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 63 AKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred HCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 3678999999999999999999999999999988765554433
No 359
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=28.43 E-value=80 Score=24.88 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 339 FLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 339 f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
.++.+...|-+.+- ..++++.||+.+|||+.-+.+.+-.
T Consensus 6 ~i~~~~~~i~~~~~---~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 6 IIQNVLSYITEHFS---EGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHHTT---SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45555556655543 4699999999999999887777643
No 360
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=27.82 E-value=63 Score=24.13 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=27.3
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL 387 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL 387 (439)
--++|+..|+++||+.+++=.-|-+|=.-|-+
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 45799999999999999999999988666644
No 361
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=27.69 E-value=76 Score=26.14 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=33.4
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce--eecccCCE
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA--KIDAKSGT 397 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a--KID~~~g~ 397 (439)
-+..++...||+.+|+|+.-+=+.|-+|...|=+.- ..|...+.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 578999999999999999999999999999997765 23555444
No 362
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=27.26 E-value=51 Score=27.13 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHH
Q 013640 337 DEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIV 379 (439)
Q Consensus 337 ~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv 379 (439)
+..++.+...|-+.+. ..++++.||+.+|||+.-+.+.+-
T Consensus 10 ~~~i~~~~~~i~~~~~---~~~sl~~lA~~~~~S~~~l~r~fk 49 (129)
T 1bl0_A 10 AITIHSILDWIEDNLE---SPLSLEKVSERSGYSKWHLQRMFK 49 (129)
T ss_dssp HHHHHHHHHHHHTTTT---SCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC---CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4566777766666554 459999999999999988776664
No 363
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=27.19 E-value=71 Score=27.85 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=36.1
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPT 403 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~ 403 (439)
+.-.++...||+.+|+|++-+-+.+..|-..|-|. ...|.|++..+
T Consensus 175 ~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 220 (227)
T 3dkw_A 175 VEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDR 220 (227)
T ss_dssp CCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCS
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCH
Confidence 34567889999999999999999999999988663 34566665443
No 364
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=27.11 E-value=87 Score=25.34 Aligned_cols=43 Identities=5% Similarity=0.068 Sum_probs=36.7
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSG 396 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g 396 (439)
.+..++...||+.+|+|+.-+-+.|-+|...|=+.-+-|...+
T Consensus 48 ~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 48 DESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 3567999999999999999999999999999988766654443
No 365
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=27.00 E-value=1.2e+02 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=35.8
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
.-.++...||+.+|+|++-+-+.+..|-.+|-+. ...|.|++..
T Consensus 167 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 210 (220)
T 3dv8_A 167 ELKITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILD 210 (220)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred eecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeC
Confidence 3478999999999999999999999999988663 3466676543
No 366
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=26.85 E-value=1.1e+02 Score=24.95 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=37.9
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEE
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVI 399 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~ 399 (439)
-+.. +...||+.+|+|+.-+=+.|-+|...|=+.-+-|...+...
T Consensus 48 ~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~ 92 (144)
T 3f3x_A 48 EEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIV 92 (144)
T ss_dssp HSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceE
Confidence 3455 99999999999999999999999999988877776665443
No 367
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=26.77 E-value=45 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.1
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 013640 359 DMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 359 ~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
....||..+|+|...+..|-.|
T Consensus 33 er~eLA~~tgLt~~qVkvWFqN 54 (66)
T 3nau_A 33 EVYRLIEVTGLARSEIKKWFSD 54 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHhhHhccc
Confidence 4788999999999999999987
No 368
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.65 E-value=49 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.0
Q ss_pred hcccc-HHHHHHHcCCCHHHHHHHHHH
Q 013640 355 HQRID-MAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 355 y~~I~-I~~lA~~l~~s~~~~E~wiv~ 380 (439)
|.+.. ...||.+||+++..|+.|.-|
T Consensus 25 yp~~~~r~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 25 HPDEKRLEGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp SCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44443 889999999999999999876
No 369
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=26.59 E-value=65 Score=26.90 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHH
Q 013640 336 RDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYE 372 (439)
Q Consensus 336 ~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~ 372 (439)
.+.+++.|+.++.+ +-|..+|++.||++.|||..
T Consensus 4 r~~Il~aa~~l~~~---~G~~~~ti~~Ia~~agvs~~ 37 (194)
T 3bqz_B 4 KDKILGVAKELFIK---NGYNATTTGEIVKLSESSKG 37 (194)
T ss_dssp CHHHHHHHHHHHHH---HTTTTCCHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHH---cCCccCCHHHHHHHhCCCch
Confidence 35678888888777 78999999999999999965
No 370
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=26.47 E-value=81 Score=28.25 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=36.8
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTH 404 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~ 404 (439)
+.-.++-..||+.+|+|++-+-+.+..|...|-|. ...|.|++..++
T Consensus 190 i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d~~ 236 (243)
T 3la7_A 190 IDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITVHKPV 236 (243)
T ss_dssp ECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEECC--
T ss_pred EeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 34568899999999999999999999999988663 346777765443
No 371
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=26.32 E-value=58 Score=24.95 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=20.9
Q ss_pred cccHHHHHHHcCCCHHHHHHHHHHH
Q 013640 357 RIDMAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 357 ~I~I~~lA~~l~~s~~~~E~wiv~l 381 (439)
+.++..+|+.+|++.+++|+-+..+
T Consensus 48 ~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 48 SKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 4778899999999999999877543
No 372
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=26.29 E-value=84 Score=22.57 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.4
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
....+.+.+|+.+|+|+.-+...+.+...
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45669999999999999999999988765
No 373
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=26.23 E-value=1.4e+02 Score=29.66 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=33.4
Q ss_pred hhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 351 YCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 351 ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
++.-+..++++.+++.+|+|..-+.+.|..|...|-|.
T Consensus 305 ~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 305 VIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 33446779999999999999999999999999999885
No 374
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=26.16 E-value=60 Score=22.49 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.3
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHH
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWI 378 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wi 378 (439)
+-.+.++...+|+.+|+|+.-+-+|.
T Consensus 10 r~~~g~s~~~lA~~~gis~~~i~~~e 35 (66)
T 2xi8_A 10 REKKKISQSELAALLEVSRQTINGIE 35 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 44468999999999999988776665
No 375
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=26.11 E-value=98 Score=27.68 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.3
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
.-.++-..||+.+|+|++-+-+.+..|...|-| ....|.|..-
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I----~~~~~~i~i~ 217 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKRENIL----DKKKNKIIVY 217 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSE----EECSSEEEES
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCe----EeCCCEEEEe
Confidence 457899999999999999999999999998865 3355666654
No 376
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=26.00 E-value=47 Score=23.82 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~ 380 (439)
...||..+|+|+..|..|..|
T Consensus 35 r~~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 35 KEEVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 678999999999999999876
No 377
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=25.79 E-value=3.8e+02 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 164 RLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 164 k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
....+...|...+-.+||+.|.+.+.|||=
T Consensus 163 ~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y 192 (207)
T 3bvo_A 163 KQKEFTDNVSSAFEQDDFEEAKEILTKMRY 192 (207)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444556889999888877764
No 378
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=25.72 E-value=1e+02 Score=27.35 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=35.2
Q ss_pred HHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 347 IFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 347 ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
..-.|++ +.+.++..+|++||+|-..+---|=-|=|+|.+.
T Consensus 15 ~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 15 DILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 3445778 9999999999999999999987788888998774
No 379
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.37 E-value=1.4e+02 Score=23.74 Aligned_cols=45 Identities=29% Similarity=0.351 Sum_probs=38.4
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
-...+++.|+++.|++.+++=.-|.=|-|++|+ .++.++|.+...
T Consensus 20 ~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI--~~~~~~~~l~v~ 64 (82)
T 2l02_A 20 ADGISIPELARKVNLSVESTALAVGWLARENKV--VIERKNGLIEIY 64 (82)
T ss_dssp CCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSE--EEEEETTEEEEE
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHhccCce--eEEeeCCEEEEE
Confidence 458999999999999999999888899999999 667778776553
No 380
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=25.32 E-value=51 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.6
Q ss_pred cHHHHHHHcCCCHHHHHHHHHH
Q 013640 359 DMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 359 ~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
....||..+|+++..|..|.-|
T Consensus 31 ~r~~La~~l~l~~~qV~~WFqN 52 (58)
T 3rkq_A 31 ERDQLASVLKLTSTQVKIWFQN 52 (58)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHhhHH
Confidence 3678999999999999999876
No 381
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=25.31 E-value=96 Score=31.17 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=34.8
Q ss_pred HHHHHhcCC-ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhh
Q 013640 115 QMLHDRYQI-GPDQIEALYQYAKFQFECGNYSGAADYLYQYRAL 157 (439)
Q Consensus 115 ~~l~~~~g~-t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~ 157 (439)
+..++-+|- -|++...++++|..|...|+|++|.+++......
T Consensus 357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344556664 6788889999999999999999999998876554
No 382
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.15 E-value=73 Score=23.71 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=24.8
Q ss_pred hhhhcccc-HHHHHHHcCCCHHHHHHHHHHH
Q 013640 352 CRIHQRID-MAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 352 criy~~I~-I~~lA~~l~~s~~~~E~wiv~l 381 (439)
..+|.+.. ...||..+|+++..|..|..|-
T Consensus 31 ~~~yp~~~~r~~La~~~~L~~~qV~~WFqNr 61 (73)
T 1x2n_A 31 GHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 61 (73)
T ss_dssp TSCCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCcCHHHHHHHhHHH
Confidence 46776654 6789999999999999998874
No 383
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=25.15 E-value=1.3e+02 Score=28.96 Aligned_cols=44 Identities=11% Similarity=-0.053 Sum_probs=35.5
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcc
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKL 387 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL 387 (439)
|....-.+++-...++.+.||+.||||+.-+-+-|..|-..|-+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~ 49 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 33444456677788999999999999999999999998776654
No 384
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=25.10 E-value=59 Score=22.99 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~ 380 (439)
...||..+|+|+..|..|.-|
T Consensus 30 r~~La~~l~l~~~qV~~WFqN 50 (58)
T 1ig7_A 30 RAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHhhhhhhH
Confidence 678999999999999999876
No 385
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=25.04 E-value=80 Score=27.26 Aligned_cols=46 Identities=20% Similarity=0.110 Sum_probs=37.5
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
.+...++...||+.+|+|++-+-+.+..|-..|-+. ...|.|++..
T Consensus 159 ~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 204 (216)
T 4ev0_A 159 GPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVRE 204 (216)
T ss_dssp CSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred ccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeC
Confidence 456778999999999999999999999999988663 3566676643
No 386
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=24.84 E-value=52 Score=23.51 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=23.1
Q ss_pred hhhcccc-HHHHHHHcCCCHHHHHHHHHHH
Q 013640 353 RIHQRID-MAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 353 riy~~I~-I~~lA~~l~~s~~~~E~wiv~l 381 (439)
.+|.+.. ...||..+|+|+..|..|..|=
T Consensus 23 ~~yp~~~~r~~La~~~gl~~~qV~~WFqNr 52 (60)
T 1k61_A 23 NPYLDTKGLENLMKNTSLSRIQIKNWVSNR 52 (60)
T ss_dssp SCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455444 7789999999999999998763
No 387
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=24.83 E-value=89 Score=24.53 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.1
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
..++++.||+.+|||+.-+.+.+-.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5799999999999999887766643
No 388
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=24.56 E-value=98 Score=27.39 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=32.0
Q ss_pred hhhhhc-cccHHHHHHHcCCCHHHHHHHHHHHhhcCccc
Q 013640 351 YCRIHQ-RIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLD 388 (439)
Q Consensus 351 ycriy~-~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~ 388 (439)
+++-+. ..++..||+.||+|..-+-+.|..|-+.|-+.
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 344443 58999999999999999999999999998774
No 389
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=24.48 E-value=52 Score=23.57 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~ 380 (439)
...||..+|+|+..|..|.-|
T Consensus 31 r~~La~~l~l~~~qV~~WFqN 51 (60)
T 1jgg_A 31 RCELAAQLNLPESTIKVWFQN 51 (60)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHhhHH
Confidence 678999999999999999876
No 390
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=24.45 E-value=81 Score=23.12 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHhhCChhHHHHhhhcchhccHHHHHHhcCCChhHHHHHHHH
Q 013640 89 AAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQY 134 (439)
Q Consensus 89 ~~~~~~~~~~~e~~~~l~~~dk~~n~~~l~~~~g~t~e~~~al~~~ 134 (439)
++....+++||.|...=.. .-.+||+ .-|+|.+-|+..++.
T Consensus 13 i~~Av~FL~dp~V~~sp~~----~K~~FL~-sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 13 IATAVKFLQNSRVRQSPLA----TRRAFLK-KKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHCTTGGGSCHH----HHHHHHH-HTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCChhhhcCCHH----HHHHHHH-HcCCCHHHHHHHHHc
Confidence 3345789999998664322 2236884 559999999988764
No 391
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=24.37 E-value=85 Score=26.87 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=33.3
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEe
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIM 400 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~ 400 (439)
-.++-..||+.+|+|++-+-+.+..|...|-|. ...|.|+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i 203 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVV 203 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEE
Confidence 468999999999999999999999999988663 33455544
No 392
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.29 E-value=1.5e+02 Score=21.73 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=21.8
Q ss_pred hhhhccccHHHHHHHcCCCHHHHHHHH
Q 013640 352 CRIHQRIDMAVLAEKLNLNYEEAQRWI 378 (439)
Q Consensus 352 criy~~I~I~~lA~~l~~s~~~~E~wi 378 (439)
++--+.++...+|+.+|+|+.-+-+|.
T Consensus 20 ~r~~~gltq~~lA~~~gvs~~~is~~e 46 (80)
T 3kz3_A 20 KKNELGLSYESVADKMGMGQSAVAALF 46 (80)
T ss_dssp HHHHHTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 344678999999999999988776665
No 393
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=24.23 E-value=60 Score=26.74 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
|.+....+ -+...+|+..-|++||+|++++++|.-.+=.
T Consensus 38 rK~~VV~~-v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 38 RKIAVVRG-VIYGLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp HHHHHHHH-HHHTTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34434444 3568899999999999999999999876533
No 394
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.23 E-value=70 Score=22.28 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=25.7
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
....+.+.+|+.||+|+.-+...+.+...
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999988765
No 395
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.22 E-value=24 Score=26.43 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=19.7
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 359 DMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 359 ~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
.+..||+.||++++++-.|++..|+
T Consensus 56 ~~~~ia~~l~v~~~~l~~~l~~~~~ 80 (80)
T 3kz3_A 56 NAALLAKILKVSVEEFSPSIAREIR 80 (80)
T ss_dssp HHHHHHHHHTSCGGGTCHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHhHHHHhhCc
Confidence 3667888899999888888887663
No 396
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=24.14 E-value=64 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=21.0
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHH
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWI 378 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wi 378 (439)
|-.+.++...+|+.+|+|+.-+-+|.
T Consensus 14 r~~~g~s~~~lA~~~gis~~~i~~~e 39 (68)
T 2r1j_L 14 RKKLKIRQAALGKMVGVSNVAISQWE 39 (68)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 34467999999999999998776664
No 397
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=23.86 E-value=68 Score=33.10 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=29.9
Q ss_pred hhccHHHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHH
Q 013640 110 QHYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELN 189 (439)
Q Consensus 110 k~~n~~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~ 189 (439)
|--++..+++.+. +|.. .+....|..+++.|.|+.|..++... +.....--|-+..++++.|.+-..
T Consensus 106 Klg~l~e~e~f~~-~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 106 KTNRLAELEEFIN-GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp ---CHHHHTTTTT-CC-----------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHc-CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 3334444555554 4433 48899999999999999999887643 233333334455667777777666
Q ss_pred HH
Q 013640 190 QL 191 (439)
Q Consensus 190 kl 191 (439)
|+
T Consensus 173 KA 174 (449)
T 1b89_A 173 KA 174 (449)
T ss_dssp HH
T ss_pred Hc
Confidence 66
No 398
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=23.82 E-value=1.9e+02 Score=28.24 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHhcCCChhHHH--HHHHHHHHHHhc-----CChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHH
Q 013640 116 MLHDRYQIGPDQIE--ALYQYAKFQFEC-----GNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEEL 188 (439)
Q Consensus 116 ~l~~~~g~t~e~~~--al~~~ak~~y~~-----Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l 188 (439)
.+++-..++|...+ +..-+|.+|+.. ||.++|.+++.....+.++...-....||..-|. ..++.+.+...+
T Consensus 185 ~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~-~~gd~~~a~~~L 263 (301)
T 3u64_A 185 MLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI-PLNNRAGFDEAL 263 (301)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT-TTTCHHHHHHHH
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-hcCCHHHHHHHH
Confidence 45666667777766 788899999996 9999999999999999886545566666654332 246788888888
Q ss_pred HHHHH
Q 013640 189 NQLKE 193 (439)
Q Consensus 189 ~klke 193 (439)
++.-.
T Consensus 264 ~kAL~ 268 (301)
T 3u64_A 264 DRALA 268 (301)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77744
No 399
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=23.72 E-value=21 Score=22.05 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=9.1
Q ss_pred ccCCCchHHHH
Q 013640 46 NKTNMVDYAMD 56 (439)
Q Consensus 46 k~TnM~dy~~~ 56 (439)
+.|+|.|||..
T Consensus 5 kQTs~TDFYhs 15 (26)
T 2zvv_Y 5 RQTSMTDFYHS 15 (26)
T ss_pred cccchhHHHhh
Confidence 57999999865
No 400
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.67 E-value=3.7e+02 Score=23.70 Aligned_cols=75 Identities=7% Similarity=-0.004 Sum_probs=54.7
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHH---HHHh---hcCHHHHHHHHHHHHHHhc
Q 013640 123 IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMA---AEIL---MQNWDIALEELNQLKEKVD 196 (439)
Q Consensus 123 ~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la---~eIl---~~~w~~a~~~l~klke~id 196 (439)
.+....+.-+.-|..+|+.|+|=.|-+.|..+=..+.+.+..-+.+=|.+. ..+. .+||..|..-+.+....+.
T Consensus 27 ~e~~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 27 WEHETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred ccCCCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444556677888888999999999999999987766554222344445444 3333 4899999999999988887
Q ss_pred C
Q 013640 197 D 197 (439)
Q Consensus 197 ~ 197 (439)
.
T Consensus 107 ~ 107 (161)
T 2ijq_A 107 G 107 (161)
T ss_dssp T
T ss_pred h
Confidence 6
No 401
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.53 E-value=72 Score=22.37 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.3
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHH
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWI 378 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wi 378 (439)
+-...++...+|+.+|+|+.-+-+|.
T Consensus 10 r~~~glsq~~lA~~~gis~~~i~~~e 35 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLE 35 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 44578999999999999988776664
No 402
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.48 E-value=61 Score=22.26 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=21.1
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHH
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIV 379 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv 379 (439)
...+...+|+.||+|+.-+-+|+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 567999999999999999988873
No 403
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=23.37 E-value=81 Score=26.17 Aligned_cols=35 Identities=6% Similarity=0.113 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHH
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYE 372 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~ 372 (439)
-.+.+++.|+.++-+ +-|..+|++.||++.|||..
T Consensus 11 ~r~~Il~aa~~l~~~---~G~~~~ti~~Ia~~agvs~~ 45 (196)
T 3col_A 11 KQVKIQDAVAAIILA---EGPAGVSTTKVAKRVGIAQS 45 (196)
T ss_dssp HHHHHHHHHHHHHHH---HCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHh---cCcccCCHHHHHHHhCCcHH
Confidence 456788888887777 48999999999999999965
No 404
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=23.35 E-value=1.1e+02 Score=22.99 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhhc---cccHHHHHHHc-CCCHHHHHHHHHHH
Q 013640 341 ENARLFIFETYCRIHQ---RIDMAVLAEKL-NLNYEEAQRWIVNL 381 (439)
Q Consensus 341 e~aR~~ife~ycriy~---~I~I~~lA~~l-~~s~~~~E~wiv~l 381 (439)
+++|..|+..+++-.+ .++++.||+.- |.|-.+++..+-..
T Consensus 3 ~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA 47 (83)
T 3aji_B 3 RRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQES 47 (83)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4789999999998664 78999999988 89988877655443
No 405
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=23.27 E-value=89 Score=26.79 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=33.0
Q ss_pred cccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEe
Q 013640 357 RIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIM 400 (439)
Q Consensus 357 ~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~ 400 (439)
.++-..||+.+|+|++-+-+.+..|-..|-|. ...|.|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i 206 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVV 206 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEE
Confidence 58899999999999999999999999988663 34555544
No 406
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=23.24 E-value=5.2e+02 Score=25.04 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=53.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 115 QMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 115 ~~l~~~~g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
..+++-..+.|+..++++.+|..+...|+|++|.+.+.....+-+.. ..+...+=.+-..+++|+.|.+...++-+
T Consensus 153 ~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455577778899999999999999999999998888765432 22222222233346788888888777654
No 407
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=23.12 E-value=2.1e+02 Score=22.43 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhccccHHHHHHHc-CCCHHHHHHHHHHHhhcCccceeecccC
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKL-NLNYEEAQRWIVNLIRNSKLDAKIDAKS 395 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l-~~s~~~~E~wiv~lI~~~rL~aKID~~~ 395 (439)
|..|..... ....+...||+.+ |+|+.-+=+-|-+|...|=+.-+.|...
T Consensus 27 ~~~IL~~L~--~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 27 TLLIIFQIN--RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp HHHHHHHHT--TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred HHHHHHHHH--hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCC
Confidence 344444433 5779999999999 5999999999999999998887766543
No 408
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=23.06 E-value=1.6e+02 Score=23.12 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=42.8
Q ss_pred HHHHHhhhhhccccHHHHHHHcCC-CHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 346 FIFETYCRIHQRIDMAVLAEKLNL-NYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 346 ~ife~ycriy~~I~I~~lA~~l~~-s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
.|+..... -...+++.++++.|+ +.+++=.-|.=|-|++|+ .|+.++|.+...
T Consensus 14 ~VW~~L~~-~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI--~~~~~~~~l~v~ 67 (77)
T 2l01_A 14 QIWEALNG-TEGLTQKQIKKATKLKADKDFFLGLGWLLREDKV--VTSEVEGEIFVK 67 (77)
T ss_dssp HHHHHHTT-SSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCE--EEEEETTEEEEE
T ss_pred HHHHHHhc-CCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCce--EEEeeCCEEEEE
Confidence 34444444 378999999999999 999999888888999999 788888887653
No 409
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.99 E-value=42 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.4
Q ss_pred cccHHHHHHHcCCCHHHHHHHHH
Q 013640 357 RIDMAVLAEKLNLNYEEAQRWIV 379 (439)
Q Consensus 357 ~I~I~~lA~~l~~s~~~~E~wiv 379 (439)
..++..+|+.||+|..-+-+|+-
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 48999999999999998888864
No 410
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=22.92 E-value=58 Score=23.31 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=22.2
Q ss_pred hhcccc-HHHHHHHcCCCHHHHHHHHHHH
Q 013640 354 IHQRID-MAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 354 iy~~I~-I~~lA~~l~~s~~~~E~wiv~l 381 (439)
+|.+.. ...||..+|+++..|..|.-|=
T Consensus 22 ~yp~~~~r~~La~~l~l~~~qV~~WFqNr 50 (60)
T 3a02_A 22 HYPDVFTREELAMKIGLTEARIQVWFQNR 50 (60)
T ss_dssp SSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHCcCHHHHHHHhhhh
Confidence 344433 7789999999999999998763
No 411
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=22.92 E-value=90 Score=27.22 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=33.5
Q ss_pred cccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 357 RIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 357 ~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
.++-..||+.+|+|++-+-+.+..|...|-|. ...|.|++-
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 227 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH----ARGKTVVLY 227 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ECCCEEEEe
Confidence 47899999999999999999999999988663 345666543
No 412
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.85 E-value=2e+02 Score=23.90 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=28.2
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEe
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIM 400 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~ 400 (439)
..++...||+.+|+++.-+=+.|-+|...|=+. +.|...+....
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR~~~ 94 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADARCKR 94 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC------------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCCeeE
Confidence 458999999999999999999999999999773 45655554443
No 413
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=22.51 E-value=2.8e+02 Score=21.72 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCcccee
Q 013640 348 FETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAK 390 (439)
Q Consensus 348 fe~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aK 390 (439)
|.-.|-+...+....||..+|+|+.-+.+.+-.|...|=+.-.
T Consensus 11 ~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3333444334999999999999999999999999999977543
No 414
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.46 E-value=77 Score=22.35 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.3
Q ss_pred hhhccccHHHHHHHcCCCHHHHHHHH
Q 013640 353 RIHQRIDMAVLAEKLNLNYEEAQRWI 378 (439)
Q Consensus 353 riy~~I~I~~lA~~l~~s~~~~E~wi 378 (439)
|-...++...+|+.+|+|+.-+-+|.
T Consensus 12 r~~~glsq~~lA~~~gis~~~i~~~e 37 (71)
T 1zug_A 12 RIALKMTQTELATKAGVKQQSIQLIE 37 (71)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHH
Confidence 44578999999999999988776665
No 415
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=22.38 E-value=60 Score=24.10 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=17.5
Q ss_pred ccHHHHHHHcCCCHHHHHHHH
Q 013640 358 IDMAVLAEKLNLNYEEAQRWI 378 (439)
Q Consensus 358 I~I~~lA~~l~~s~~~~E~wi 378 (439)
+++..+|+..|||..-+-++|
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 579999999999988766655
No 416
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.35 E-value=78 Score=26.81 Aligned_cols=35 Identities=3% Similarity=0.078 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHH
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYE 372 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~ 372 (439)
-.+.+++.|+.++-+ +.|..+|++.||++.|||..
T Consensus 14 ~r~~Il~aa~~lf~~---~G~~~~tv~~Ia~~agvs~~ 48 (195)
T 2iu5_A 14 TQKIIAKAFKDLMQS---NAYHQISVSDIMQTAKIRRQ 48 (195)
T ss_dssp HHHHHHHHHHHHHHH---SCGGGCCHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHh---CCCCeeCHHHHHHHhCCCHH
Confidence 356788888777766 68999999999999999953
No 417
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=22.31 E-value=70 Score=22.62 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~ 380 (439)
...||..+|+++..|..|--|
T Consensus 27 r~~LA~~l~l~~~qV~~WFqN 47 (56)
T 3a03_A 27 RAALAKALRMTDAQVKTWFQN 47 (56)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHhhHhhHH
Confidence 678999999999999999876
No 418
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=22.20 E-value=75 Score=27.82 Aligned_cols=45 Identities=7% Similarity=0.206 Sum_probs=36.2
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+.-.++-..||+.+|+|++-+-+.+..|..+|-|. ...|.|.+..
T Consensus 174 i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d 218 (227)
T 3d0s_A 174 VTHDLTQEEIAQLVGASRETVNKALADFAHRGWIR----LEGKSVLISD 218 (227)
T ss_dssp EECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESC
T ss_pred EcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ecCCEEEEcC
Confidence 44568999999999999999999999999988653 3456666543
No 419
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.11 E-value=95 Score=25.41 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=26.3
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhh
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIR 383 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~ 383 (439)
-+...+.+.+|+.||+|+.-+.+.+.+...
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999987654
No 420
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=22.03 E-value=2e+02 Score=28.53 Aligned_cols=75 Identities=5% Similarity=0.055 Sum_probs=50.0
Q ss_pred HHHHHhcC-CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhccccchhHHHHHHHHHH-HHhhcCHHHHHHHHHHHH
Q 013640 115 QMLHDRYQ-IGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERRLSALWGKMAA-EILMQNWDIALEELNQLK 192 (439)
Q Consensus 115 ~~l~~~~g-~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~~~~~~k~~~lwg~la~-eIl~~~w~~a~~~l~klk 192 (439)
+.+++-.. +.|+.....+.+|.++.+.|+++.|.+.+.......+... ..+|-.++. +.-.++++.|.+-+.++.
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445553 5677788889999999999999999999998887543221 234544432 334556666666555553
No 421
>3nft_A Translocator protein BIPD; virulence, translocation, transport protein; 1.51A {Burkholderia pseudomallei} PDB: 2ixr_A 2j9t_A* 2izp_A
Probab=21.96 E-value=79 Score=30.84 Aligned_cols=111 Identities=17% Similarity=0.307 Sum_probs=66.7
Q ss_pred hHHHHHHHhhhccCCcchHHHHHHHhhhcCChhHHHHHHHHHHHHhcCCcccccccccccccccccHHHHHHHHHHHHHH
Q 013640 270 FKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMKECEEVILNDPFLGKRVEDSNFATVPLRDEFLENARLFIFE 349 (439)
Q Consensus 270 l~~i~~vi~qe~~~Y~Dpit~f~~~lY~~fdF~~aq~~L~~~e~~i~~D~FL~~~~~~~~~~~~~~~~~f~e~aR~~ife 349 (439)
+++|+.+|.+. +.|.|..-+.+ .-|-+| |.++-+.|.... | +++. +++|.|- =..+.| ...+.
T Consensus 123 ~~~L~d~I~ng-kdYlDvYa~IV-k~YTdy-yQdfNe~LSKlS-----d-~IsA--kDGN~IK-FD~~sf-----k~~l~ 185 (303)
T 3nft_A 123 LQGLVDVIGQG-KSDIDAYATIV-EGLTKY-FQSVADVMSKLQ-----D-YISA--KDDKNMK-IDGGKI-----KALIQ 185 (303)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHH-HHHHHH-HHHHHHHHHHGG-----G-GEEE--ETTTEEE-ECHHHH-----HHHHH
T ss_pred HHHHHHHHhcc-HHHHHHHHHHH-HHHHHH-HHHHHHHHHHHH-----h-hccc--cCCCeee-ecHHHH-----HHHHH
Confidence 57888888885 44888866666 446656 444444444432 3 4432 5565554 122344 44566
Q ss_pred HhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCCCCchhHHHHHH
Q 013640 350 TYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEPTHPNVYEQLID 413 (439)
Q Consensus 350 ~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~~~~~~yqqvi~ 413 (439)
.+..-|+.++.+ +.++++.|.-.| .+ .-+| +.+|+|.. +.++|..+++
T Consensus 186 ~l~~kY~~v~~P--------sd~ea~~W~k~L--g~--~f~V-~~sG~I~~---Dl~~i~~m~~ 233 (303)
T 3nft_A 186 QVIDHLPTMQLP--------KGADIARWRKEL--GD--AVSI-SDSGVVTI---NPDKLIKMRD 233 (303)
T ss_dssp HHHHTCCEEECC--------TTCCHHHHHHHH--CT--TEEE-CTTCEEEE---CCHHHHHHHH
T ss_pred HHHHhcCCCCCC--------CHHHHHHHHHHh--CC--Ccee-CCCceEEe---CcHHHHHHHh
Confidence 677788888876 678999999988 22 2344 46887664 4444444443
No 422
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=21.82 E-value=1.4e+02 Score=26.40 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=35.9
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+.-.++-..||+.+|+|++-+-+.+..|...|-|. ...|.|++..
T Consensus 183 ~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~----~~~~~i~I~d 227 (232)
T 1zyb_A 183 KTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIE----LHRKEILIPD 227 (232)
T ss_dssp EEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE----EETTEEEESC
T ss_pred EEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE----ecCCEEEEeC
Confidence 34568999999999999999999999999988663 2356666543
No 423
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=21.79 E-value=1.3e+02 Score=23.13 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=28.5
Q ss_pred HHHHhhCChhHHHHhhhcchhccHHHHHHhcCCChhHHHHHHHHH
Q 013640 91 PIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYA 135 (439)
Q Consensus 91 ~~~~~~~~~e~~~~l~~~dk~~n~~~l~~~~g~t~e~~~al~~~a 135 (439)
....+|+||.|...=.. +-.+||+ .-|+|.+-|+..++.|
T Consensus 20 ~Av~FLqdp~V~~sp~~----~K~~FL~-sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 20 TAVKFLQNSRVRQSPLA----TRRAFLK-KKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHCSTTGGGSCHH----HHHHHHH-HTTCCHHHHHHHHHHH
T ss_pred HHHHHhCChhhhhCCHH----HHHHHHH-HcCCCHHHHHHHHHHc
Confidence 35679999998654322 2236884 5599999999888776
No 424
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.74 E-value=69 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.4
Q ss_pred cHHHHHHHcCCCHHHHHHHHHHH
Q 013640 359 DMAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 359 ~I~~lA~~l~~s~~~~E~wiv~l 381 (439)
....||..+|+++..|..|..|=
T Consensus 36 ~r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2da1_A 36 QIKEMADKSGLPQKVIKHWFRNT 58 (70)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHhhhh
Confidence 47789999999999999999763
No 425
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=21.69 E-value=2.3e+02 Score=26.33 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccce
Q 013640 344 RLFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDA 389 (439)
Q Consensus 344 R~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~a 389 (439)
+..+++... -...+++..||+.+|+|..-+-+.|..|...|-+..
T Consensus 154 ~~~IL~~L~-~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 154 EMKLLNVLY-ETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQ 198 (244)
T ss_dssp HHHHHHHHH-HHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 334444333 357899999999999999999999999999987754
No 426
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=21.56 E-value=4.1e+02 Score=23.25 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=25.1
Q ss_pred cchhHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 013640 161 SERRLSALWGKMAAEILMQNWDIALEELNQLKE 193 (439)
Q Consensus 161 ~~~k~~~lwg~la~eIl~~~w~~a~~~l~klke 193 (439)
...+...+...++-.+-.+||+.|...+.|||=
T Consensus 125 ~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f 157 (174)
T 3hho_A 125 VTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKF 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 345667777777777778999999988877753
No 427
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.49 E-value=1.6e+02 Score=24.30 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHc-----CCCHHHHHHHHHHHhhcCccceeecccCCEE
Q 013640 340 LENARLFIFETYCRIHQRIDMAVLAEKL-----NLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV 398 (439)
Q Consensus 340 ~e~aR~~ife~ycriy~~I~I~~lA~~l-----~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V 398 (439)
+..-|..|++.+.....-+|.+.|.+.+ ++|..-+=+-|-.|...|-+. +++..+|..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~-~~~~~~~~~ 71 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD-TLHTDTGES 71 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE-EEECTTSCE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE-EEEeCCCce
Confidence 5567999999998887889999999999 999999999999999999876 777766644
No 428
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.45 E-value=86 Score=25.86 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHH
Q 013640 336 RDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYE 372 (439)
Q Consensus 336 ~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~ 372 (439)
.+.+++.|..++-+ +-|..+|++.||++.|||..
T Consensus 10 r~~Il~aa~~l~~~---~G~~~~ti~~Ia~~agvs~~ 43 (188)
T 3qkx_A 10 AEQIFSATDRLMAR---EGLNQLSMLKLAKEANVAAG 43 (188)
T ss_dssp HHHHHHHHHHHHHH---SCSTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHh---cCcccCCHHHHHHHhCCCcc
Confidence 45677888777666 68999999999999999965
No 429
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=21.44 E-value=3e+02 Score=33.01 Aligned_cols=22 Identities=32% Similarity=0.215 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHH
Q 013640 130 ALYQYAKFQFECGNYSGAADYL 151 (439)
Q Consensus 130 al~~~ak~~y~~Gdy~~A~~~L 151 (439)
..+++|+.+.+.|+|++|.+.+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 4455555555555555555543
No 430
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=21.35 E-value=51 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.2
Q ss_pred ccHHHHHHHcCCCHHHHHHHHHH
Q 013640 358 IDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 358 I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
++.+.+|+.||||+.-+.+|+.+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67899999999999999988753
No 431
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=21.28 E-value=94 Score=25.71 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHH
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEE 373 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~ 373 (439)
-.+.+++.|..++-+ +-|..+|+..||++.|||..-
T Consensus 10 ~r~~Il~aa~~l~~~---~G~~~~tv~~Ia~~agvs~~t 45 (195)
T 3ppb_A 10 KKQAILETALQLFVS---QGFHGTSTATIAREAGVATGT 45 (195)
T ss_dssp HHHHHHHHHHHHHHH---TCSTTSCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHh---cCcccCCHHHHHHHhCCChhH
Confidence 456788888888776 689999999999999999653
No 432
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.25 E-value=1e+02 Score=26.97 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=35.5
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIME 401 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~ 401 (439)
+.-.++...||+.+|+|++-+-+.+..|-..|-|. ...|.|++.
T Consensus 172 ~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 215 (231)
T 3e97_A 172 EVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLL 215 (231)
T ss_dssp TEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEES
T ss_pred EecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEe
Confidence 45678999999999999999999999998888663 345555554
No 433
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.22 E-value=79 Score=26.17 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCH
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNY 371 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~ 371 (439)
-.+.+++.|..++-+ +-|..+|+..||++.|||.
T Consensus 7 ~r~~Il~aa~~l~~~---~G~~~~t~~~Ia~~agvs~ 40 (191)
T 1sgm_A 7 SREKILHTASRLSQL---QGYHATGLNQIVKESGAPK 40 (191)
T ss_dssp HHHHHHHHHHHHHHH---HCTTTCCHHHHHHHHCCCS
T ss_pred hHHHHHHHHHHHHHH---cCccccCHHHHHHHHCCCc
Confidence 346788888877776 6899999999999999974
No 434
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=21.18 E-value=1.8e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.288 Sum_probs=30.6
Q ss_pred cccHHHHHHHHH-HHHHHHhhhhhccccHHHHHHHcCCCHHHHHHHHHH
Q 013640 333 VPLRDEFLENAR-LFIFETYCRIHQRIDMAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 333 ~~~~~~f~e~aR-~~ife~ycriy~~I~I~~lA~~l~~s~~~~E~wiv~ 380 (439)
.|-........| ..|+..| ...++..||.+.|+|..-+-+.|-+
T Consensus 71 IPk~~~~~~~~Rn~~I~~~f----~G~n~~eLArkYgLSer~I~~Ii~~ 115 (129)
T 1rr7_A 71 IPRGQALDSLIRDLRIWNDF----NGRNVSELTTRYGVTFNTVYKAIRR 115 (129)
T ss_dssp CCCSHHHHHHHHHHHHHHHC----CSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred eeCCchHHHHHHHHHHHHHh----CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 466666665555 4556665 4679999999999997666555543
No 435
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=21.05 E-value=1.9e+02 Score=21.00 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=27.6
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCc
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSK 386 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~r 386 (439)
+...+.+.+|+.+|+|+.-+...+.+...--+
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 57889999999999999999999998776433
No 436
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=21.01 E-value=75 Score=22.76 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~ 380 (439)
...||..+|+++..|..|--|
T Consensus 33 r~~La~~l~l~~~qV~~WFqN 53 (61)
T 2hdd_A 33 RQQLSSELGLNEAQIKIWFKN 53 (61)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhhh
Confidence 678999999999999999876
No 437
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.92 E-value=77 Score=23.43 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~l 381 (439)
...||..+|+++..|..|.-|=
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNR 58 (70)
T 2cra_A 37 RRKISAATSLSERQITIWFQNR 58 (70)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHhhHhhHhH
Confidence 6789999999999999999873
No 438
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=20.92 E-value=1e+02 Score=25.52 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhhccccHHHHHHHcCCCHHH
Q 013640 335 LRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEE 373 (439)
Q Consensus 335 ~~~~f~e~aR~~ife~ycriy~~I~I~~lA~~l~~s~~~ 373 (439)
-.+.+++.|..++-+ +-|..+|++.||++.|||..-
T Consensus 9 ~r~~Il~aa~~l~~~---~G~~~~ti~~Ia~~agvs~~t 44 (194)
T 2g7s_A 9 KADDILQCARTLIIR---GGYNSFSYADISQVVGIRNAS 44 (194)
T ss_dssp HHHHHHHHHHHHHHH---HCGGGCCHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHHHHHH---cCcccCCHHHHHHHhCCCchH
Confidence 345677777777766 688999999999999999653
No 439
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.87 E-value=1.2e+02 Score=27.12 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=41.7
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEE---EeCCCCchhHHHHHHhh
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTV---IMEPTHPNVYEQLIDHT 415 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V---~~~~~~~~~yqqvi~kt 415 (439)
+..++...||+.+|++..-+=+.|-+|...|=+.-.-|...+.. ..+..-...++.+.+..
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 123 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEF 123 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998877766655543 33322234445444433
No 440
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=20.78 E-value=67 Score=23.45 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=22.3
Q ss_pred hhccc-cHHHHHHHcCCCHHHHHHHHHHH
Q 013640 354 IHQRI-DMAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 354 iy~~I-~I~~lA~~l~~s~~~~E~wiv~l 381 (439)
+|.+. ....||..+|+|+..|..|-.|=
T Consensus 26 ~yp~~~~r~~La~~l~l~~~qV~~WFqNr 54 (66)
T 1bw5_A 26 PRPDALMKEQLVEMTGLSPRVIRVWFQNK 54 (66)
T ss_dssp SCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHCcCHHHHHHHhHHH
Confidence 44443 36789999999999999998773
No 441
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=20.69 E-value=1.1e+02 Score=26.66 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=36.2
Q ss_pred hhccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEEeCC
Q 013640 354 IHQRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVIMEP 402 (439)
Q Consensus 354 iy~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~~~~ 402 (439)
+.-.++-..||+.+|+|++-+-+.+..|...|-| ....|.|.+..
T Consensus 177 ~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~i~i~d 221 (232)
T 2gau_A 177 LSIYLSREELATLSNMTVSNAIRTLSTFVSERML----ALDGKRIKIID 221 (232)
T ss_dssp BSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSE----EEETTEEEESC
T ss_pred EEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCE----eeCCCEEEEeC
Confidence 4467899999999999999999999999888865 33456666543
No 442
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.60 E-value=1.2e+02 Score=22.93 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=26.5
Q ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHhhc
Q 013640 355 HQRIDMAVLAEKLNLNYEEAQRWIVNLIRN 384 (439)
Q Consensus 355 y~~I~I~~lA~~l~~s~~~~E~wiv~lI~~ 384 (439)
+...+.+.+|+.||+|..-+...+.+....
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 477899999999999999999999887663
No 443
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=20.51 E-value=1.2e+03 Score=28.11 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred HHHccCCCchHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHhhh-cchhccHHHHHHhc
Q 013640 43 ELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRA-NDQHYNLQMLHDRY 121 (439)
Q Consensus 43 ~llk~TnM~dy~~~~~~~l~~~~~~p~e~~~k~~ev~~~l~~l~~~~~~~~~~~~~~e~~~~l~~-~dk~~n~~~l~~~~ 121 (439)
.++...+|..=+..+|+.... ..+.....+..+..++.+.+ +.+-+.+|+++.++-. --+.-..+.+-+.|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie~i~nldrAiE-~Aervn~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV-------NTSAVQVLIEHIGNLDRAYE-FAERCNEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHHHHhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 344557777888888877541 11122334446666766653 3444577888776643 01112233333344
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHhhc
Q 013640 122 QIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALC 158 (439)
Q Consensus 122 g~t~e~~~al~~~ak~~y~~Gdy~~A~~~L~~~~~~~ 158 (439)
. ..+.-++++..|.++.+.|+|++|.++|...+...
T Consensus 1129 i-KAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1129 I-KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred H-hcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 3 34555678999999999999999999998888765
No 444
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.46 E-value=69 Score=23.66 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVN 380 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~ 380 (439)
...||..+||++..|..|.-|
T Consensus 37 r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2dmu_A 37 REQLARKVHLREEKVEVWFKN 57 (70)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHeehcccc
Confidence 678999999999999999876
No 445
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.26 E-value=70 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=23.1
Q ss_pred hhhcccc-HHHHHHHcCCCHHHHHHHHHHH
Q 013640 353 RIHQRID-MAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 353 riy~~I~-I~~lA~~l~~s~~~~E~wiv~l 381 (439)
.+|.+.. ...||..+|+++..|..|-.|=
T Consensus 28 ~~yp~~~~r~~La~~~~L~~~qV~~WFqNr 57 (64)
T 1du6_A 28 NPYPSEEAKEELAKKCGITVSQVSNWFGNK 57 (64)
T ss_dssp SCCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555443 6789999999999999998773
No 446
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=20.18 E-value=1.4e+02 Score=25.04 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=35.7
Q ss_pred ccccHHHHHHHcCCCHHHHHHHHHHHhhcCccceeecccCCEEE
Q 013640 356 QRIDMAVLAEKLNLNYEEAQRWIVNLIRNSKLDAKIDAKSGTVI 399 (439)
Q Consensus 356 ~~I~I~~lA~~l~~s~~~~E~wiv~lI~~~rL~aKID~~~g~V~ 399 (439)
..+++..||+.+|++..-+=+.|-+|...|=+.-+-|...+...
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~ 104 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVV 104 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCee
Confidence 58999999999999999999999999999999877777666543
No 447
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.01 E-value=82 Score=23.18 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHH
Q 013640 360 MAVLAEKLNLNYEEAQRWIVNL 381 (439)
Q Consensus 360 I~~lA~~l~~s~~~~E~wiv~l 381 (439)
...||..+|+++..|..|.-|=
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2da2_A 37 FEQLSNLLNLPTRVIVVWFQNA 58 (70)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHhHHhhHhh
Confidence 6789999999999999998763
Done!