BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013641
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
pdb|1Q7L|C Chain C, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
Length = 198
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 127/196 (64%), Gaps = 3/196 (1%)
Query: 20 TSSGKSHEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPI 79
TS G EE +T F+QYLR T P P+Y A V+F A+ +GL + +E P +
Sbjct: 2 TSKGPE-EEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVV 60
Query: 80 LLLTWPGSDPSLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAI 139
+LTWPG++P+L SIL NSH D VP + WSH PF AF E G I+ARG+QD KC++I
Sbjct: 61 TVLTWPGTNPTLSSILLNSHTDVVPVFKEHWSHDPFEAFKDSE-GYIYARGAQDMKCVSI 119
Query: 140 QYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQA 199
QY+EA+R L V+ + RT+H ++VPDEE+GG GM FV+ EF L GF +DEG A
Sbjct: 120 QYLEAVRRL-KVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIA 178
Query: 200 STNDDFRVFYADRSPW 215
+ D F VFY++RSPW
Sbjct: 179 NPTDAFTVFYSERSPW 194
>pdb|1Q7L|B Chain B, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
pdb|1Q7L|D Chain D, Zn-binding Domain Of The T347g Mutant Of Human
Aminoacylase- I
Length = 88
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 353 NPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFL 412
NPWW+ F R L +PEI+ + D RY+R +G+P LGFSPM TP+LLHDH+E L
Sbjct: 1 NPWWAAFSRVCKDMNLTL-EPEIMPAAGDNRYIRAVGVPALGFSPMNRTPVLLHDHDERL 59
Query: 413 KDTVFLKGVEVYESVISSLSS 433
+ VFL+GV++Y ++ +L+S
Sbjct: 60 HEAVFLRGVDIYTRLLPALAS 80
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 158/391 (40%), Gaps = 41/391 (10%)
Query: 47 NPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVP-A 105
+PN + + + +G Q +E++P L L W S P I F H D VP
Sbjct: 19 SPNDEGCQQIIAERLEKLGFQ---IEWMPFNDTLNL-WAKHGTSEPVIAFAGHTDVVPTG 74
Query: 106 EPDKWSHPPFSAFHSPETGQIFARGSQDDK-CIAIQYIEAIRNLILVKNFKPIRTVHASY 164
+ ++WS PPFSA G ++ RG+ D K +A + A + N K T+
Sbjct: 75 DENQWSSPPFSA--EIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKG--TIALLI 130
Query: 165 VPDEEIGGFDGMAKFVESNEFRELNVGFVM-DEGQASTNDDFRVFYADRSPWHLIIRAKG 223
DEE DG VE+ R+ + + M E ++ N V R + +G
Sbjct: 131 TSDEEATAKDGTIHVVETLMARDEKITYCMVGEPSSAKNLGDVVKNGRRGSITGNLYIQG 190
Query: 224 APGHGSRMFDNGAMENLMKSVEMITKFRESQFDVVKAGRAANSEVI---SVNLVYLKAGI 280
GH + + + A + K+ + + Q+D +E S+ + + AG
Sbjct: 191 IQGHVA--YPHLAENPIHKAALFLQELTTYQWD-------KGNEFFPPTSLQIANIHAGT 241
Query: 281 PSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDY 340
S N+ P+E F+ R V ++I++++AE N+ Y I +
Sbjct: 242 GSN-----NVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK--HNLKYRIE-----WNL 289
Query: 341 KGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMAN 400
G+P +T A+ G K E T+D R++ +G V+ F P+ +
Sbjct: 290 SGKPFLT---KPGKLLDSITSAIEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNS 346
Query: 401 TPILLHDHNEFLKDTVFLKGVEVYESVISSL 431
T +H NE + K E+Y ++ +L
Sbjct: 347 T---IHKVNECVSVEDLGKCGEIYHKMLVNL 374
>pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|4H2K|B Chain B, Crystal Structure Of The Catalytic Domain Of
Succinyl-Diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 269
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 47 NPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVP-A 105
+PN + + + +G Q +E++P L L W S P I F H D VP
Sbjct: 22 SPNDEGCQQIIAERLEKLGFQ---IEWMPFNDTLNL-WAKHGTSEPVIAFAGHTDVVPTG 77
Query: 106 EPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVK-NFKPIRTVHASY 164
+ ++WS PPFSA G ++ RG+ D K I A + N K T+
Sbjct: 78 DENQWSSPPFSA--EIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKG--TIALLI 133
Query: 165 VPDEEIGGFDGMAKFVESNEFRELNVGFVM 194
DEE DG VE+ R+ + + M
Sbjct: 134 TSDEEATAKDGTIHVVETLMARDEKITYCM 163
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 372 KPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSL 431
K E T+D R++ +G V+ F P+ +T +H NE + K E+Y ++ +L
Sbjct: 210 KAETGGGTSDGRFIALMGAEVVEFGPLNST---IHKVNECVSVEDLGKCGEIYHKMLVNL 266
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 36 KQYLRFNTAHPNPNYTAPVSFLISQ----AQSIGLQ---------FK------TLEFVPN 76
+Q +F H +Y + LIS+ AQ +GL+ FK ++
Sbjct: 32 EQIEKFEKDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYT 91
Query: 77 KPILLLTWPGSDPSLPSILFNSHLDSVPAEPDK-WSHPPFSAFHSPETGQIFARGSQDDK 135
P ++ + S P +++F +H D+VPA+ D+ W+ PF+ S G ++ RG DDK
Sbjct: 92 APFVMAHFKSSRPDAKTLIFYNHYDTVPADGDQVWTEDPFTL--SVRNGFMYGRGVDDDK 149
Query: 136 CIAIQYIEAIRNLI 149
+ A+R +
Sbjct: 150 GHITARLSALRKYM 163
>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Mn Bestatin
pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
Zn Bestatin
Length = 479
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 74 VPNKPILLLTWPGSDPSLPSILFNSHLDSVPAE-PDKWSHPPFSAFHSPETGQIFARGSQ 132
+P PILL GSDP ++ HLD PA D W PF+ G+++ RGS
Sbjct: 79 IPLPPILLGKL-GSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE--REGKLYGRGST 135
Query: 133 DDK 135
DDK
Sbjct: 136 DDK 138
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 42 NTAHPNPNYTAPVSFLISQA----QSIGLQFKTLEFVPNK---------PILLLTWPGSD 88
++ P P + + +++ A Q +G + +++ P + P ++L GSD
Sbjct: 40 DSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSD 99
Query: 89 PSLPSILFNSHLDSVPAE-PDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAI 145
P+ ++ F HLD PA+ D W P+ + G+++ RG+ D+K + +I A+
Sbjct: 100 PTKGTVCFYGHLDVQPADRGDGWLTDPYVL--TEVDGKLYGRGATDNKGPVLAWINAV 155
>pdb|1XJO|A Chain A, Structure Of Aminopeptidase
Length = 284
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 42 NTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPI---LLLTWPGSDPSLPSILFNS 98
N AH P Y A V ++ ++ + G +F L+ WPG DP+ ++ +
Sbjct: 26 NRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDPN-KVLMAGA 84
Query: 99 HLDSV 103
HLDSV
Sbjct: 85 HLDSV 89
>pdb|1CP7|A Chain A, Aminopeptidase From Streptomyces Griseus
pdb|1QQ9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
Methionine
pdb|1F2O|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Leucine
pdb|1F2P|A Chain A, Crystal Structure Of The Streptomyces Griseus
Aminopeptidase Complexed With L-Phenylalanine
pdb|1TF8|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With L-
Tryptophan
pdb|1TF9|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-L- Phenylalanine
pdb|1TKF|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Tryptophan
pdb|1TKH|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Phenylalanine
pdb|1TKJ|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With D-
Methionine
pdb|1XBU|A Chain A, Streptomyces Griseus Aminopeptidase Complexed With
P-Iodo-D- Phenylalanine
Length = 284
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 42 NTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPI---LLLTWPGSDPSLPSILFNS 98
N AH P Y A V ++ ++ + G +F L+ WPG DP+ ++ +
Sbjct: 26 NRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDPN-KVLMAGA 84
Query: 99 HLDSV 103
HLDSV
Sbjct: 85 HLDSV 89
>pdb|1LFW|A Chain A, Crystal Structure Of Pepv
Length = 470
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 98 SHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVK--NFK 155
H+D VPA + W+ PF E G+I+ RGS DDK ++ A ++L+K FK
Sbjct: 86 GHMDVVPA-GEGWTRDPFK-MEIDEEGRIYGRGSADDKGPSLT---AYYGMLLLKEAGFK 140
Query: 156 PIRTVHASYVPDEE 169
P + + +EE
Sbjct: 141 PKKKIDFVLGTNEE 154
>pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
pdb|3CT9|B Chain B, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
Length = 356
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 85 PGSDPSLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEA 144
P D P+IL NSH+D+V + W PF+ E G+++ GS D + ++
Sbjct: 60 PXFDLKKPTILLNSHIDTVKP-VNGWRKDPFTPRE--ENGKLYGLGSNDAGASVVSLLQV 116
Query: 145 IRNLILV-KNFKPIRTVHASYVPDEEIGGFDGM 176
L +N+ I +EE+ G +G+
Sbjct: 117 FLQLCRTSQNYNLIYLASC----EEEVSGKEGI 145
>pdb|2RB7|A Chain A, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
pdb|2RB7|B Chain B, Crystal Structure Of Co-Catalytic Metallopeptidase
(Yp_387682.1) From Desulfovibrio Desulfuricans G20 At
1.60 A Resolution
Length = 364
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 77/386 (19%), Positives = 143/386 (37%), Gaps = 79/386 (20%)
Query: 39 LRFNTAHPNPNYTAPVS-FLISQAQSIGLQFKTLEF--VPNKPILLLTWPGSDPSLPSIL 95
+RF + H P + + F+ G+ + + +P+ +L + +L
Sbjct: 16 IRFPSXHSRPEQISRCAGFIXDWCAQNGIHAERXDHDGIPSVXVL------PEKGRAGLL 69
Query: 96 FNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDK-CIAIQYI---EAIRNLILV 151
+H+D V AE D + E +++ RG+ DDK +A+ + + + L
Sbjct: 70 LXAHIDVVDAEDDLF-------VPRVENDRLYGRGANDDKYAVALGLVXFRDRLNALKAA 122
Query: 152 KNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYAD 211
+ + DEEIGG +G AK + + +D G +V +
Sbjct: 123 GRSQKDXALGLLITGDEEIGGXNGAAKAL---PLIRADYVVALDGGNPQ-----QVITKE 174
Query: 212 RSPWHLIIRAKGAPGHGSRMFDNGAMENLMKS--VEMITKFRESQFDVVKAGRAANSEVI 269
+ + + G HG+R + +L+ + T F E D
Sbjct: 175 KGIIDIKLTCTGKAAHGARPWXGVNAVDLLXEDYTRLKTLFAEENEDHWHR--------- 225
Query: 270 SVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDP----DLIRRRIAEEWAPAIR 325
+VNL ++AG + N P AE F+ R+ DP D IR+ ++
Sbjct: 226 TVNLGRIRAGEST------NKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVS-------- 271
Query: 326 NMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYM 385
G + + P+ D +P+ +R + +G GK +DARY+
Sbjct: 272 ---------GTVSIVRTVPVFLAAD--SPY---TERLLALSGATAGKAH---GASDARYL 314
Query: 386 RQLGIPVL-----GFSPMANTPILLH 406
+ G+ + GF+ + + LH
Sbjct: 315 GENGLTGVVWGAEGFNTLHSRDECLH 340
>pdb|3T68|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea
pdb|3T6M|A Chain A, Crystal Structure Of The Catalytic Domain Of Dape Protein
From V.Cholerea In The Zn Bound Form
Length = 268
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 56 FLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP-DKWSHPP 114
+I + +++G + +++ F W P +F H D VPA P +W PP
Sbjct: 31 LMIERLKALGFEIESMVFEDTTNF----WARRGTQSPLFVFAGHTDVVPAGPLSQWHTPP 86
Query: 115 FSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLI 149
F + G + RG+ D K I A+ I
Sbjct: 87 FEP--TVIDGFLHGRGAADMKGSLACMIVAVERFI 119
>pdb|3JU3|A Chain A, Crystal Structure Of Alpha Chain Of Probable 2-Oxoacid
Ferredoxin Oxidoreductase From Thermoplasma Acidophilum
Length = 118
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 267 EVISVNLVYLKAGIPSPTGFVMNMQPS 293
E IS NL+YLK P PT FV N+ S
Sbjct: 38 EGISANLLYLKXFSPFPTEFVKNVLSS 64
>pdb|3PFE|A Chain A, Crystal Structure Of A M20a Metallo Peptidase (Dape,
Lpg0809) From Legionella Pneumophila Subsp. Pneumophila
Str. Philadelphia 1 At 1.50 A Resolution
Length = 472
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
Query: 54 VSFLISQAQSIGLQFKTLEFVPNK---PILLLTWPGSDPSLPSILFNSHLDSVPAEPDKW 110
V+ + + +S + TLE V K P+L PG ++L HLD P E W
Sbjct: 51 VNHIANWCKSHAPKGXTLEIVRLKNRTPLLFXEIPGQIDD--TVLLYGHLDKQP-EXSGW 107
Query: 111 S---HPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNL 148
S HP + G ++ RG DD A + AIR L
Sbjct: 108 SDDLHPWKPVL---KNGLLYGRGGADDGYSAYASLTAIRAL 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,425,404
Number of Sequences: 62578
Number of extensions: 578561
Number of successful extensions: 1185
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1169
Number of HSP's gapped (non-prelim): 20
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)