Query 013641
Match_columns 439
No_of_seqs 139 out of 1674
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01880 Ac-peptdase-euk N-ac 100.0 5.2E-61 1.1E-65 481.0 43.0 391 27-433 7-399 (400)
2 PRK08588 succinyl-diaminopimel 100.0 4.1E-58 8.8E-63 456.8 41.7 370 29-433 2-377 (377)
3 PRK06915 acetylornithine deace 100.0 5.1E-58 1.1E-62 462.5 39.5 381 26-435 14-421 (422)
4 PRK13013 succinyl-diaminopimel 100.0 2.1E-57 4.6E-62 458.9 42.2 390 26-434 11-424 (427)
5 PRK06837 acetylornithine deace 100.0 3.6E-57 7.9E-62 456.2 39.0 379 24-433 15-423 (427)
6 PRK08596 acetylornithine deace 100.0 5.3E-57 1.1E-61 454.2 39.9 387 26-436 10-420 (421)
7 KOG2275 Aminoacylase ACY1 and 100.0 6.9E-57 1.5E-61 423.9 37.5 407 14-433 10-419 (420)
8 PRK09133 hypothetical protein; 100.0 1.5E-56 3.3E-61 457.3 42.2 383 26-433 34-470 (472)
9 PRK13983 diaminopimelate amino 100.0 1.6E-56 3.5E-61 449.0 39.7 380 27-430 3-399 (400)
10 PRK13009 succinyl-diaminopimel 100.0 9.9E-56 2.2E-60 439.5 41.6 364 30-432 3-374 (375)
11 TIGR01246 dapE_proteo succinyl 100.0 8.3E-56 1.8E-60 439.1 39.3 365 32-431 2-370 (370)
12 TIGR01910 DapE-ArgE acetylorni 100.0 2.5E-56 5.5E-61 443.5 33.5 365 33-423 2-375 (375)
13 PRK08201 hypothetical protein; 100.0 8.5E-55 1.8E-59 442.8 42.0 388 26-432 11-454 (456)
14 PRK07906 hypothetical protein; 100.0 4.1E-55 8.9E-60 441.7 38.6 378 31-431 1-426 (426)
15 PRK07522 acetylornithine deace 100.0 5.4E-55 1.2E-59 435.7 38.5 367 29-432 4-384 (385)
16 TIGR01892 AcOrn-deacetyl acety 100.0 5E-55 1.1E-59 432.8 36.9 358 33-428 1-364 (364)
17 PRK05111 acetylornithine deace 100.0 1.4E-54 2.9E-59 432.5 38.9 366 29-432 5-381 (383)
18 PRK06446 hypothetical protein; 100.0 1.9E-54 4E-59 437.4 40.3 384 29-433 2-435 (436)
19 PRK06133 glutamate carboxypept 100.0 3.8E-54 8.1E-59 431.9 40.7 367 26-433 34-408 (410)
20 PRK08651 succinyl-diaminopimel 100.0 2.6E-54 5.5E-59 432.1 39.1 375 26-434 3-393 (394)
21 PRK13004 peptidase; Reviewed 100.0 5.6E-54 1.2E-58 429.7 39.6 377 26-434 12-398 (399)
22 TIGR03320 ygeY M20/DapE family 100.0 5.9E-54 1.3E-58 429.1 38.8 375 26-432 10-394 (395)
23 PRK08262 hypothetical protein; 100.0 1.5E-53 3.3E-58 436.8 41.6 383 26-433 41-485 (486)
24 TIGR03526 selenium_YgeY putati 100.0 9.9E-54 2.2E-58 427.3 39.0 376 26-433 10-395 (395)
25 PRK07338 hypothetical protein; 100.0 4.1E-54 8.9E-59 431.5 36.1 363 26-433 14-399 (402)
26 PRK07473 carboxypeptidase; Pro 100.0 2E-53 4.3E-58 421.4 38.8 364 24-431 6-375 (376)
27 PRK09104 hypothetical protein; 100.0 4.8E-53 1E-57 430.7 42.5 390 26-432 14-462 (464)
28 PRK07907 hypothetical protein; 100.0 2E-52 4.3E-57 424.4 41.8 386 26-432 15-447 (449)
29 PRK08737 acetylornithine deace 100.0 1.7E-52 3.8E-57 412.4 37.6 356 27-430 4-363 (364)
30 PRK00466 acetyl-lysine deacety 100.0 2.8E-52 6E-57 409.8 38.3 337 28-434 9-345 (346)
31 PRK07079 hypothetical protein; 100.0 1E-51 2.2E-56 421.3 41.2 386 28-434 16-457 (469)
32 PRK08652 acetylornithine deace 100.0 4.6E-52 1E-56 408.9 37.1 344 29-433 2-346 (347)
33 PRK04443 acetyl-lysine deacety 100.0 4E-51 8.6E-56 401.8 38.0 342 28-431 5-348 (348)
34 COG0624 ArgE Acetylornithine d 100.0 1.9E-50 4.1E-55 405.8 39.2 382 26-433 10-408 (409)
35 TIGR01886 dipeptidase dipeptid 100.0 4.1E-50 9E-55 407.8 37.1 369 26-433 10-466 (466)
36 PRK13007 succinyl-diaminopimel 100.0 1.3E-49 2.8E-54 392.2 37.7 342 28-428 6-351 (352)
37 TIGR01900 dapE-gram_pos succin 100.0 1.3E-49 2.7E-54 394.1 34.8 342 34-413 1-373 (373)
38 TIGR01902 dapE-lys-deAc N-acet 100.0 4.5E-49 9.9E-54 385.6 35.7 333 33-433 1-335 (336)
39 PRK07205 hypothetical protein; 100.0 9.2E-49 2E-53 397.0 37.4 369 24-433 6-443 (444)
40 PRK13381 peptidase T; Provisio 100.0 5E-49 1.1E-53 394.6 34.9 362 30-433 2-404 (404)
41 TIGR01883 PepT-like peptidase 100.0 8.1E-49 1.8E-53 387.8 34.8 349 30-428 1-360 (361)
42 PRK06156 hypothetical protein; 100.0 6.2E-48 1.3E-52 396.7 40.8 373 26-435 43-518 (520)
43 PRK07318 dipeptidase PepV; Rev 100.0 2.6E-48 5.7E-53 395.6 35.1 368 26-433 11-466 (466)
44 PLN02280 IAA-amino acid hydrol 100.0 2.7E-46 5.9E-51 377.8 39.2 366 29-433 97-475 (478)
45 PLN02693 IAA-amino acid hydrol 100.0 8.3E-46 1.8E-50 372.1 38.8 363 27-433 45-422 (437)
46 PRK05469 peptidase T; Provisio 100.0 1E-46 2.2E-51 378.4 32.2 364 29-434 2-407 (408)
47 TIGR01893 aa-his-dipept aminoa 100.0 6.2E-46 1.3E-50 379.0 37.9 350 28-431 3-476 (477)
48 PRK08554 peptidase; Reviewed 100.0 7.5E-46 1.6E-50 373.2 37.5 371 30-433 2-438 (438)
49 TIGR01887 dipeptidaselike dipe 100.0 2.1E-45 4.6E-50 370.5 37.8 361 29-428 2-447 (447)
50 PRK15026 aminoacyl-histidine d 100.0 4.3E-45 9.3E-50 370.1 37.4 357 27-432 8-483 (485)
51 TIGR01882 peptidase-T peptidas 100.0 4.1E-46 9E-51 373.5 29.6 358 29-433 3-408 (410)
52 KOG2276 Metalloexopeptidases [ 100.0 2.9E-44 6.3E-49 334.8 32.7 390 24-433 11-472 (473)
53 TIGR01891 amidohydrolases amid 100.0 9.3E-44 2E-48 351.6 31.9 346 32-417 2-360 (363)
54 PRK12892 allantoate amidohydro 100.0 2E-43 4.3E-48 355.3 32.8 350 25-433 6-411 (412)
55 PRK12893 allantoate amidohydro 100.0 1.3E-42 2.9E-47 349.3 35.1 350 27-434 8-411 (412)
56 PRK09290 allantoate amidohydro 100.0 6.7E-43 1.5E-47 351.1 32.6 349 26-433 4-411 (413)
57 PRK12891 allantoate amidohydro 100.0 1.8E-42 3.8E-47 347.9 33.1 351 26-434 7-411 (414)
58 PRK12890 allantoate amidohydro 100.0 4.5E-42 9.8E-47 345.4 34.2 348 27-433 7-412 (414)
59 TIGR01879 hydantase amidase, h 100.0 4.1E-41 8.8E-46 336.8 30.7 346 30-431 2-401 (401)
60 COG1473 AbgB Metal-dependent a 100.0 3.1E-39 6.8E-44 314.6 34.9 368 26-433 9-390 (392)
61 TIGR03176 AllC allantoate amid 100.0 6.6E-40 1.4E-44 327.4 30.4 347 29-433 3-404 (406)
62 PRK13590 putative bifunctional 100.0 4.4E-38 9.4E-43 327.0 33.6 353 24-433 176-588 (591)
63 PRK13799 unknown domain/N-carb 100.0 4.6E-36 9.9E-41 311.5 35.0 356 23-432 175-589 (591)
64 PF01546 Peptidase_M20: Peptid 99.9 4.9E-27 1.1E-31 210.7 15.9 184 95-430 1-189 (189)
65 COG2195 PepD Di- and tripeptid 99.9 4.9E-25 1.1E-29 215.1 22.8 361 27-432 3-412 (414)
66 COG4187 RocB Arginine degradat 99.8 1.6E-19 3.4E-24 171.1 16.4 219 26-248 5-261 (553)
67 PRK10199 alkaline phosphatase 99.8 2.5E-18 5.3E-23 164.2 18.7 123 45-182 49-188 (346)
68 TIGR03106 trio_M42_hydro hydro 99.8 3.2E-17 6.9E-22 158.9 24.0 137 27-172 1-221 (343)
69 PRK09961 exoaminopeptidase; Pr 99.8 1.8E-16 3.9E-21 154.2 22.7 258 32-432 3-334 (344)
70 TIGR03107 glu_aminopep glutamy 99.7 1.6E-15 3.5E-20 147.0 24.3 254 33-432 2-342 (350)
71 COG1363 FrvX Cellulase M and r 99.6 5.5E-14 1.2E-18 134.7 23.3 261 29-432 2-347 (355)
72 PRK09864 putative peptidase; P 99.6 1.3E-13 2.8E-18 133.5 23.5 256 32-432 3-342 (356)
73 PF07687 M20_dimer: Peptidase 99.5 3.1E-14 6.7E-19 116.0 8.8 104 209-322 1-106 (111)
74 KOG2194 Aminopeptidases of the 98.9 7.8E-09 1.7E-13 107.7 10.4 146 27-196 55-225 (834)
75 PF04389 Peptidase_M28: Peptid 98.7 1.5E-08 3.2E-13 89.9 6.2 86 93-196 2-89 (179)
76 PF05343 Peptidase_M42: M42 gl 98.4 6.8E-07 1.5E-11 85.1 8.6 67 122-196 124-190 (292)
77 KOG3946 Glutaminyl cyclase [Po 97.8 0.00039 8.4E-09 63.7 12.9 134 27-182 49-200 (338)
78 COG2234 Iap Predicted aminopep 97.5 0.00038 8.2E-09 70.7 8.2 52 129-184 224-275 (435)
79 KOG2195 Transferrin receptor a 97.3 0.00084 1.8E-08 70.7 8.5 82 76-183 337-421 (702)
80 KOG2526 Predicted aminopeptida 97.1 0.0024 5.3E-08 61.9 9.1 101 76-196 192-305 (555)
81 PF05450 Nicastrin: Nicastrin; 95.8 0.051 1.1E-06 50.0 8.8 71 92-182 1-74 (234)
82 PF05343 Peptidase_M42: M42 gl 94.6 0.033 7.2E-07 53.2 3.6 68 352-423 222-292 (292)
83 COG4882 Predicted aminopeptida 92.4 0.26 5.6E-06 47.2 5.5 73 77-182 178-259 (486)
84 PRK02256 putative aminopeptida 92.4 0.2 4.3E-06 50.9 5.1 75 351-429 380-460 (462)
85 PF00883 Peptidase_M17: Cytoso 91.0 2.4 5.3E-05 40.6 10.5 119 32-170 1-141 (311)
86 PTZ00371 aspartyl aminopeptida 89.9 0.74 1.6E-05 47.0 6.5 82 351-435 373-459 (465)
87 PRK05015 aminopeptidase B; Pro 89.1 8.1 0.00018 38.6 12.6 128 29-171 100-248 (424)
88 PRK02813 putative aminopeptida 87.3 1.1 2.4E-05 45.2 5.6 74 352-429 347-426 (428)
89 PRK02256 putative aminopeptida 87.2 1.1 2.4E-05 45.6 5.6 47 123-176 251-297 (462)
90 cd00433 Peptidase_M17 Cytosol 84.4 22 0.00048 36.4 13.3 126 30-170 155-296 (468)
91 PRK02813 putative aminopeptida 82.7 1.5 3.3E-05 44.2 4.3 46 124-177 226-274 (428)
92 PTZ00412 leucyl aminopeptidase 80.0 35 0.00075 35.5 12.6 126 31-171 214-356 (569)
93 PRK00913 multifunctional amino 78.8 32 0.00069 35.3 12.1 123 31-171 173-311 (483)
94 PTZ00371 aspartyl aminopeptida 77.9 3.8 8.3E-05 41.9 5.3 52 123-177 242-294 (465)
95 COG2195 PepD Di- and tripeptid 68.0 6.3 0.00014 39.5 4.0 89 76-177 45-139 (414)
96 COG2984 ABC-type uncharacteriz 65.4 40 0.00086 32.4 8.5 106 49-172 43-174 (322)
97 KOG2597 Predicted aminopeptida 64.2 93 0.002 32.0 11.3 110 50-172 208-333 (513)
98 PRK14864 putative biofilm stre 62.3 23 0.0005 28.0 5.4 66 4-73 5-85 (104)
99 KOG3566 Glycosylphosphatidylin 60.3 2.1E+02 0.0046 29.9 13.0 119 28-183 69-194 (617)
100 COG0260 PepB Leucyl aminopepti 53.9 1.7E+02 0.0038 30.1 11.4 126 30-171 168-310 (485)
101 PF09940 DUF2172: Domain of un 53.4 88 0.0019 30.9 8.7 76 84-194 124-202 (386)
102 COG1362 LAP4 Aspartyl aminopep 53.3 29 0.00063 34.6 5.6 76 352-430 355-435 (437)
103 PRK09929 hypothetical protein; 47.2 56 0.0012 25.2 5.1 64 10-73 8-74 (91)
104 COG4187 RocB Arginine degradat 44.2 23 0.0005 35.5 3.3 50 385-437 501-551 (553)
105 PRK15026 aminoacyl-histidine d 43.4 71 0.0015 33.0 7.0 42 293-336 356-397 (485)
106 PRK10259 hypothetical protein; 40.2 90 0.0019 23.8 5.3 61 9-73 8-71 (86)
107 PRK10318 hypothetical protein; 38.2 87 0.0019 25.5 5.2 56 7-62 4-64 (121)
108 PF04114 Gaa1: Gaa1-like, GPI 37.7 2.4E+02 0.0052 29.3 9.7 43 135-183 36-78 (504)
109 TIGR03044 PS_II_psb27 photosys 35.9 62 0.0013 26.8 4.1 56 9-64 15-79 (135)
110 PF02127 Peptidase_M18: Aminop 31.7 62 0.0013 32.8 4.2 73 352-427 354-431 (432)
111 COG1464 NlpA ABC-type metal io 24.1 1.4E+02 0.0031 28.0 4.8 28 48-75 38-66 (268)
112 cd06411 PB1_p51 The PB1 domain 23.6 3.2E+02 0.0069 20.4 6.4 39 294-332 4-42 (78)
113 COG1362 LAP4 Aspartyl aminopep 23.5 77 0.0017 31.7 3.1 56 48-103 21-90 (437)
114 PF02127 Peptidase_M18: Aminop 23.3 1.6E+02 0.0034 29.9 5.4 48 123-172 226-274 (432)
115 COG4310 Uncharacterized protei 23.1 6E+02 0.013 24.6 8.6 31 133-166 195-225 (435)
116 PF10829 DUF2554: Protein of u 22.9 60 0.0013 23.5 1.6 26 1-26 1-26 (76)
117 PF10346 Con-6: Conidiation pr 22.8 2E+02 0.0044 18.0 3.7 34 27-65 2-35 (36)
118 PF04389 Peptidase_M28: Peptid 21.7 1.3E+02 0.0028 25.9 4.0 39 375-413 133-171 (179)
No 1
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=5.2e-61 Score=481.01 Aligned_cols=391 Identities=57% Similarity=1.009 Sum_probs=322.9
Q ss_pred CchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCC
Q 013641 27 EEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAE 106 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~ 106 (439)
..++++++|++|++|||++++.++.++++||+++|+++|++++.++..++.+|+++.++|+++.+|+|+|++||||||++
T Consensus 7 ~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~ 86 (400)
T TIGR01880 7 EEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVF 86 (400)
T ss_pred chHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCC
Confidence 46788999999999999985455789999999999999999887765446889999998755434899999999999998
Q ss_pred CCCCCCCCCceeE-eCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccc
Q 013641 107 PDKWSHPPFSAFH-SPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEF 185 (439)
Q Consensus 107 ~~~w~~~Pf~~~~-~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 185 (439)
+..|+++||.+.+ + ||+|||||++|||++++++|.|++.|+ +.+.+++++|.|+|+++||.|+..|++.+++++.+
T Consensus 87 ~~~W~~~Pf~~~~~~--dg~iyGrG~~D~K~~~aa~l~a~~~l~-~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~ 163 (400)
T TIGR01880 87 REHWTHPPFSAFKDE--DGNIYARGAQDMKCVGVQYLEAVRNLK-ASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEF 163 (400)
T ss_pred cccCccCCccceecC--CCeEEEcccccccHHHHHHHHHHHHHH-HcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhc
Confidence 7789999999987 6 999999999999999999999999999 88888899999999999999864599999987666
Q ss_pred cccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccchhHHHHhcc-cc
Q 013641 186 RELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRESQFDVVKAGR-AA 264 (439)
Q Consensus 186 ~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~-~~ 264 (439)
...+.+++++.|..+|++...++++++|..+++|+++|+++|++.|...||+..|+.++..|.++....++...... ..
T Consensus 164 ~~~~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 243 (400)
T TIGR01880 164 KALNLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPDLA 243 (400)
T ss_pred cCCceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccc
Confidence 66678888887765666556899999999999999999999999865559999999999999876432222222110 11
Q ss_pred CCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCC
Q 013641 265 NSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRP 344 (439)
Q Consensus 265 ~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p 344 (439)
....+|++++.++||. ..|+||++|++.+|+|++|.++.+++.++|++.+++...++++++... ...|
T Consensus 244 ~~~~~t~~v~~i~gG~------~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~~~~~~~~~~~~------~~~~ 311 (400)
T TIGR01880 244 IGDVTSVNLTKLKGGV------QSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADAGEGVTYEFSQH------SGKP 311 (400)
T ss_pred ccccceeecceeccCC------cCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhccCCceEEEEeec------CCCC
Confidence 1124799999999987 889999999999999999999999999999999875334455555431 2233
Q ss_pred ccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHH
Q 013641 345 LMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVY 424 (439)
Q Consensus 345 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~ 424 (439)
+..+.+.++++++.+.+++++.+... .+....++||++++...|+|++.|||+......+|++||+++++++.+++++|
T Consensus 312 ~~~~~~~~~~lv~~l~~a~~~~~~~~-~~~~~~g~tDa~~~~~~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~~ 390 (400)
T TIGR01880 312 LVTPHDDSNPWWVAFKDAVKEMGCTF-KPEILPGSTDSRYIRAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIY 390 (400)
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCee-cceeecCcchHHHHHhCCCCeEEECCccCCcccccCCCCceEHHHHHHHHHHH
Confidence 33345567899999999999975432 45567799999999999999999999864334699999999999999999999
Q ss_pred HHHHHHhhc
Q 013641 425 ESVISSLSS 433 (439)
Q Consensus 425 ~~~l~~~~~ 433 (439)
.+++..+..
T Consensus 391 ~~~l~~~~~ 399 (400)
T TIGR01880 391 QTLISALAS 399 (400)
T ss_pred HHHHHHhhc
Confidence 999998863
No 2
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=4.1e-58 Score=456.78 Aligned_cols=370 Identities=20% Similarity=0.277 Sum_probs=309.4
Q ss_pred hhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC-
Q 013641 29 REPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP- 107 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~- 107 (439)
++.+++|++|++|||+| ++|.++++||.++|+++|++++.++..++++|+++++ |.+ .|+|+|++||||||+++
T Consensus 2 ~~~~~~l~~Lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~ 76 (377)
T PRK08588 2 EEKIQILADIVKINSVN--DNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEI-GSG--SPVLALSGHMDVVAAGDV 76 (377)
T ss_pred hHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEe-CCC--CceEEEEeeecccCCCCc
Confidence 67899999999999998 6889999999999999999998776655678999999 433 38999999999999975
Q ss_pred CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccc
Q 013641 108 DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRE 187 (439)
Q Consensus 108 ~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 187 (439)
+.|+++||.+.++ ||+|||||++|||++++++|.|++.|+ +.+..++++|.|+|++|||.|+ .|++++++++.+.+
T Consensus 77 ~~w~~~Pf~~~~~--~g~l~GrG~~D~Kgg~aa~l~a~~~l~-~~~~~~~~~i~l~~~~dEE~g~-~G~~~~~~~~~~~~ 152 (377)
T PRK08588 77 DKWTYDPFELTEK--DGKLYGRGATDMKSGLAALVIAMIELK-EQGQLLNGTIRLLATAGEEVGE-LGAKQLTEKGYADD 152 (377)
T ss_pred ccCcCCCCCeEEE--CCEEEecCcccccchHHHHHHHHHHHH-HcCCCCCCcEEEEEEcccccCc-hhHHHHHhcCccCC
Confidence 6899999999998 999999999999999999999999999 8887888999999999999987 89999999876666
Q ss_pred cceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccccCC
Q 013641 188 LNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANS 266 (439)
Q Consensus 188 ~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 266 (439)
.|.+++. +|+ ...++++++|..+++|+++|+++|++.|+.| |||..++.++..|+++... +.... ...
T Consensus 153 ~d~~i~~-----ep~-~~~i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~----~~~~~-~~~ 221 (377)
T PRK08588 153 LDALIIG-----EPS-GHGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDS----IKKHN-PYL 221 (377)
T ss_pred CCEEEEe-----cCC-CceeEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhh----hcccC-ccC
Confidence 6755543 465 3678899999999999999999999999988 9999999999999875321 11000 011
Q ss_pred CceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCC
Q 013641 267 EVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRP 344 (439)
Q Consensus 267 ~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p 344 (439)
..+|++++.++||. ..|+||++|++++|+|+.|.++.+++.++|++++++. ..+++++++.. ..+|
T Consensus 222 ~~~t~~v~~i~gG~------~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~------~~~~ 289 (377)
T PRK08588 222 GGLTHVVTIINGGE------QVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLSLDIY------SNHR 289 (377)
T ss_pred CCCceeeeEEeCCC------cCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEe------cCCC
Confidence 24789999999987 8999999999999999999999999999999888742 23344555532 2333
Q ss_pred ccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHH--hCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHH
Q 013641 345 LMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQ--LGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVE 422 (439)
Q Consensus 345 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~--~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~ 422 (439)
++. .+.++++++.+++++++..+..+......|++|+++|.. .++|++.|||+... ++|++||+++++++.++++
T Consensus 290 p~~-~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~~~~~ip~i~~Gpg~~~--~~H~~~E~i~~~~l~~~~~ 366 (377)
T PRK08588 290 PVA-SDKDSKLVQLAKDVAKSYVGQDIPLSAIPGATDASSFLKKKPDFPVIIFGPGNNL--TAHQVDEYVEKDMYLKFID 366 (377)
T ss_pred CcC-CCCCCHHHHHHHHHHHHhhCCCCceecCCCcccHHHHhhhcCCCCEEEECCCCCc--cCCCCCceeEHHHHHHHHH
Confidence 432 456789999999999997766434455678999998864 38999999998432 6999999999999999999
Q ss_pred HHHHHHHHhhc
Q 013641 423 VYESVISSLSS 433 (439)
Q Consensus 423 ~~~~~l~~~~~ 433 (439)
+|..++..+++
T Consensus 367 ~~~~~~~~~~~ 377 (377)
T PRK08588 367 IYKEIIIQYLK 377 (377)
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 3
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=5.1e-58 Score=462.51 Aligned_cols=381 Identities=18% Similarity=0.296 Sum_probs=309.5
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEec-----------------CCccEEEEEEcCCC
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFV-----------------PNKPILLLTWPGSD 88 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~-----------------~~~~nvi~~~~g~~ 88 (439)
.+.+++++++++|++|||+| ++|.++++||+++|+++|+++++++.. .+++||+++++|.+
T Consensus 14 ~~~~~~~~~l~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~ 91 (422)
T PRK06915 14 SHEEEAVKLLKRLIQEKSVS--GDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLKGSG 91 (422)
T ss_pred hhHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEcCCC
Confidence 45678999999999999997 789999999999999999998765422 24689999998765
Q ss_pred CCCCcEEEeeecccccCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecC
Q 013641 89 PSLPSILFNSHLDSVPAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPD 167 (439)
Q Consensus 89 ~~~~~vll~aH~Dtvp~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~ 167 (439)
+ .|+|+|+|||||||+++ +.|+++||.+.++ ||+|||||++|||++++++|.|+++|+ +.+.+++++|.|+|+++
T Consensus 92 ~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~--~g~lyGrG~~D~Kgg~aa~l~a~~~l~-~~~~~~~~~v~~~~~~d 167 (422)
T PRK06915 92 G-GKSMILNGHIDVVPEGDVNQWDHHPYSGEVI--GGRIYGRGTTDMKGGNVALLLAMEALI-ESGIELKGDVIFQSVIE 167 (422)
T ss_pred C-CCeEEEEeeccccCCCCcccCcCCCCCceEE--CCEEEecCcccchHHHHHHHHHHHHHH-HcCCCCCCcEEEEEecc
Confidence 4 48999999999999976 6899999999998 999999999999999999999999999 88877889999999999
Q ss_pred cccCcccCHHHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHH
Q 013641 168 EEIGGFDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEM 246 (439)
Q Consensus 168 EE~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~ 246 (439)
||.|+ .|+..++.++ + ..|.+++. +|++ ..++.+++|..+++|+++|+++|++.|+.| |||..+++++..
T Consensus 168 EE~g~-~G~~~~~~~~-~-~~d~~i~~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~~ 238 (422)
T PRK06915 168 EESGG-AGTLAAILRG-Y-KADGAIIP-----EPTN-MKFFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKSMFVIDH 238 (422)
T ss_pred cccCC-cchHHHHhcC-c-CCCEEEEC-----CCCC-ccceeecccEEEEEEEEEeeccccCCCCcCcCHHHHHHHHHHH
Confidence 99987 7988888764 3 35655543 5764 578899999999999999999999999999 999999999999
Q ss_pred HHccccchhHHHHhc-cccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCC
Q 013641 247 ITKFRESQFDVVKAG-RAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIR 325 (439)
Q Consensus 247 l~~~~~~~~~~~~~~-~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~ 325 (439)
|+++........... ........|++++.|+||. ..|+||+.|++.+++|+.|.++.+++.++|++.+++...
T Consensus 239 l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~------~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~~ 312 (422)
T PRK06915 239 LRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGS------WPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAELND 312 (422)
T ss_pred HHHHHHHhccccCCCcccCCCCCceEeEEEeeCCC------CCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 987642100000000 0001113589999999987 889999999999999999999999999999988764321
Q ss_pred ------CceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHh-CCCEEEEccC
Q 013641 326 ------NMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQL-GIPVLGFSPM 398 (439)
Q Consensus 326 ------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~-gip~v~~Gp~ 398 (439)
...++++... ....|. .+..|+++++.++++++++.+..+.....++++|+++|.+. |+|++.|||+
T Consensus 313 ~~~~~~~~~~~v~~~~----~~~~~~--~~~~d~~lv~~l~~a~~~~~G~~~~~~~~~g~tD~~~~~~~~giP~v~fGpg 386 (422)
T PRK06915 313 VDEWFVEHPVEVEWFG----ARWVPG--ELEENHPLMTTLEHNFVEIEGNKPIIEASPWGTDGGLLTQIAGVPTIVFGPG 386 (422)
T ss_pred cChhhhcCCceEEeec----ccCCcc--cCCCCCHHHHHHHHHHHHHhCCCCeeceeeeeccHHHHhccCCCCEEEECCC
Confidence 1123333210 012233 34568899999999999987665444556788999999987 9999999998
Q ss_pred CCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhccc
Q 013641 399 ANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSSFV 435 (439)
Q Consensus 399 ~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~~ 435 (439)
... .+|++||+++++++.+++++|++++.++++..
T Consensus 387 ~~~--~aH~~dE~v~~~~l~~~~~~~~~ll~~~~~~~ 421 (422)
T PRK06915 387 ETK--VAHYPNEYIEVDKMIAAAKIIALTLLDWCEVK 421 (422)
T ss_pred Ccc--ccCCCCceeEHHHHHHHHHHHHHHHHHHhCCC
Confidence 643 79999999999999999999999999998754
No 4
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=2.1e-57 Score=458.92 Aligned_cols=390 Identities=19% Similarity=0.283 Sum_probs=309.3
Q ss_pred CCchhHHHHHHhHhcCcCCCCCC-CCchHHHHHHHHHHhcCCceEEEEecC--------CccEEEEEEcCCCCCCCcEEE
Q 013641 26 HEEREPITRFKQYLRFNTAHPNP-NYTAPVSFLISQAQSIGLQFKTLEFVP--------NKPILLLTWPGSDPSLPSILF 96 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~-~e~~~~~~l~~~l~~~G~~~~~~~~~~--------~~~nvi~~~~g~~~~~~~vll 96 (439)
.+.++++++|++|++|||+++++ +|.++++||+++|+++|++++.++..+ +++|++++++|+. ++++|+|
T Consensus 11 ~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~-~~~~i~l 89 (427)
T PRK13013 11 ARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGAR-DGDCVHF 89 (427)
T ss_pred HhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCC-CCCEEEE
Confidence 45678999999999999997544 457999999999999999988765321 1569999997754 3589999
Q ss_pred eeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCH
Q 013641 97 NSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGM 176 (439)
Q Consensus 97 ~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~ 176 (439)
++|+||||++ +.|+.+||++.++ ||+|||||++|||++++++|.|+++|+ +.+.+++++|.|+|+++||.|+..|.
T Consensus 90 ~gH~DvVp~~-~~W~~~Pf~~~~~--dg~iyGrGa~D~Kg~~aa~l~a~~~l~-~~~~~~~~~v~~~~~~dEE~g~~~g~ 165 (427)
T PRK13013 90 NSHHDVVEVG-HGWTRDPFGGEVK--DGRIYGRGACDMKGGLAASIIAAEAFL-AVYPDFAGSIEISGTADEESGGFGGV 165 (427)
T ss_pred EeccccCCCC-CCCcCCCCCceEE--CCEEEeccccccchHHHHHHHHHHHHH-HhCCCCCccEEEEEEeccccCChhHH
Confidence 9999999997 5799999999999 999999999999999999999999999 87777889999999999999874578
Q ss_pred HHHHhccccc--ccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccc
Q 013641 177 AKFVESNEFR--ELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRES 253 (439)
Q Consensus 177 ~~~~~~~~~~--~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~ 253 (439)
+++++++.+. ..|++++. +|++...++++++|..+++|+++|+++|++.|+.| |||..|+++++.|+++...
T Consensus 166 ~~l~~~~~~~~~~~d~~i~~-----ep~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~ 240 (427)
T PRK13013 166 AYLAEQGRFSPDRVQHVIIP-----EPLNKDRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFP 240 (427)
T ss_pred HHHHhcCCccccCCCEEEEe-----cCCCCCceEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhh
Confidence 8888776554 34655554 46654578899999999999999999999999998 9999999999999764211
Q ss_pred hhHHHHhccc---cCCCceEeeEeEEeecccCCC----CcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc---
Q 013641 254 QFDVVKAGRA---ANSEVISVNLVYLKAGIPSPT----GFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--- 323 (439)
Q Consensus 254 ~~~~~~~~~~---~~~~~~t~~~~~i~gg~~~~~----g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--- 323 (439)
.......... .....++++++.|+||.+..+ +...|+||++|++++|+|++|.++.+++.++|++.+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~~ 320 (427)
T PRK13013 241 LLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKRA 320 (427)
T ss_pred hhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1110000000 001247899999999873100 001299999999999999999999999999999887642
Q ss_pred CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhC-C-CEEEEccCCCC
Q 013641 324 IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLG-I-PVLGFSPMANT 401 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~g-i-p~v~~Gp~~~~ 401 (439)
...+++++... ....|.. .+.++++++.+.+++++..+..+.....++++|++++...| + |++.|||+...
T Consensus 321 ~~~~~~~~~~~-----~~~~p~~--~~~~~~lv~~l~~a~~~~~g~~~~~~~~~g~~D~~~~~~~g~~~~~v~fGPg~~~ 393 (427)
T PRK13013 321 RPGFAYEIRDL-----FEVLPTM--TDRDAPVVRSVAAAIERVLGRQADYVVSPGTYDQKHIDRIGKLKNCIAYGPGILD 393 (427)
T ss_pred CCCceeEEEEc-----ccCCccc--CCCCCHHHHHHHHHHHHhhCCCCceeecCccCCHHHHHhcCCCCCEEEECCCCcc
Confidence 23555655431 1233333 45678999999999998766643445567889999999887 4 68999998643
Q ss_pred CCCCCCCCCccchHhHHHHHHHHHHHHHHhhcc
Q 013641 402 PILLHDHNEFLKDTVFLKGVEVYESVISSLSSF 434 (439)
Q Consensus 402 ~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~ 434 (439)
.+|++|||++++++.+++++|++++..+++.
T Consensus 394 --~aH~~nE~v~i~~l~~~~~~l~~~l~~~~~~ 424 (427)
T PRK13013 394 --LAHQPDEWVGIADMVDSAKVMALVLADLLAG 424 (427)
T ss_pred --ccCCCCceeEHHHHHHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999999999754
No 5
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3.6e-57 Score=456.22 Aligned_cols=379 Identities=17% Similarity=0.224 Sum_probs=310.1
Q ss_pred CCCCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEec-----------------CCccEEEEEEcC
Q 013641 24 KSHEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFV-----------------PNKPILLLTWPG 86 (439)
Q Consensus 24 ~~~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~-----------------~~~~nvi~~~~g 86 (439)
.+.+.++++++|++|++|||+| ++|.++++||+++|+++|++++++... ++++||+++++|
T Consensus 15 i~~~~~~~~~~l~~li~ipS~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~g 92 (427)
T PRK06837 15 VDAGFDAQVAFTQDLVRFPSTR--GAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYRP 92 (427)
T ss_pred HHhhhHHHHHHHHHHhccCCCC--CcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEecC
Confidence 3457889999999999999997 688999999999999999998765421 257999999987
Q ss_pred CCCCCCcEEEeeecccccCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEe
Q 013641 87 SDPSLPSILFNSHLDSVPAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYV 165 (439)
Q Consensus 87 ~~~~~~~vll~aH~Dtvp~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~ 165 (439)
.++++|+|+|+|||||||+++ +.|+++||++.++ ||+|||||++|||++++++|.|+++|+ +.+.+++++|.|+|+
T Consensus 93 ~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~--~g~lyGrG~~D~Kgg~~a~l~a~~~l~-~~~~~~~~~i~~~~~ 169 (427)
T PRK06837 93 AGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIV--DGWMYGRGAADMKAGLAAMLFALDALR-AAGLAPAARVHFQSV 169 (427)
T ss_pred CCCCCCeEEEEeecccCCCCCccccccCCCCcEEE--CCEEEecCcccchHHHHHHHHHHHHHH-HcCCCCCCcEEEEEE
Confidence 654468999999999999986 7899999999999 999999999999999999999999999 888788899999999
Q ss_pred cCcccCcccCHHHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHH
Q 013641 166 PDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSV 244 (439)
Q Consensus 166 ~~EE~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i 244 (439)
++||.++ .|+..++..+. ..|++++. +|++ ..++++.+|..+++|+++|+++|++.|..| ||+..+++++
T Consensus 170 ~dEE~~g-~g~~~~~~~~~--~~d~~iv~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i 240 (427)
T PRK06837 170 IEEESTG-NGALSTLQRGY--RADACLIP-----EPTG-EKLVRAQVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHLI 240 (427)
T ss_pred eccccCC-HhHHHHHhcCc--CCCEEEEc-----CCCC-CccccccceeEEEEEEEEeeccccCCcccCcCHHHHHHHHH
Confidence 9999876 68877776553 25655554 4663 678999999999999999999999999988 9999999999
Q ss_pred HHHHccccchhHHH-H-hccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcc
Q 013641 245 EMITKFRESQFDVV-K-AGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAP 322 (439)
Q Consensus 245 ~~l~~~~~~~~~~~-~-~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~ 322 (439)
+.|.++........ . ..........|++++.|+||. ..|+||+.|++.+++|++|.++.+++.++|++.+++
T Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~------~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~~ 314 (427)
T PRK06837 241 QALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGD------WASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLAA 314 (427)
T ss_pred HHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCC------CCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHHH
Confidence 99987532110000 0 000001123589999999887 889999999999999999999999999999988864
Q ss_pred cCC--------CceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHH-hCCCEE
Q 013641 323 AIR--------NMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQ-LGIPVL 393 (439)
Q Consensus 323 ~~~--------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~-~gip~v 393 (439)
... ..++++.. ....|+ .++.++++++.+.+++++..+..+.+...++++|++++.. .|+|++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~------~~~~p~--~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~g~tDa~~~~~~~gip~v 386 (427)
T PRK06837 315 AARDDRFLSNNPPEVVWSG------FLAEGY--VLEPGSEAEAALARAHAAVFGGPLRSFVTTAYTDTRFYGLYYGIPAL 386 (427)
T ss_pred HHhcChhhhhCCCeEEEEe------cccCCc--CCCCCCHHHHHHHHHHHHHhCCCCeeeEEeeccchHHHhccCCCCEE
Confidence 211 12333321 122333 3577899999999999997765545566789999999985 799999
Q ss_pred EEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 394 GFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 394 ~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
.|||+.. ++|++||+++++++.+++++|++++..+++
T Consensus 387 ~~Gp~~~---~~H~~nE~i~i~~l~~~~~~~~~~l~~~~~ 423 (427)
T PRK06837 387 CYGPSGE---GIHGFDERVDLESVRKVTKTIALFVAEWCG 423 (427)
T ss_pred EECCCCC---ccCCCCceEEHHHHHHHHHHHHHHHHHHhC
Confidence 9999864 599999999999999999999999999874
No 6
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=5.3e-57 Score=454.23 Aligned_cols=387 Identities=18% Similarity=0.231 Sum_probs=311.3
Q ss_pred CCchhHHHHHHhHhcCcCCCCCC-CCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCC-CCCcEEEeeecccc
Q 013641 26 HEEREPITRFKQYLRFNTAHPNP-NYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDP-SLPSILFNSHLDSV 103 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~-~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~-~~~~vll~aH~Dtv 103 (439)
.+.++++++|++|++|||+|++. +|.++++||+++|+++|+++++++..++++||+++++|+++ .+++|+|+||||||
T Consensus 10 ~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll~~H~DtV 89 (421)
T PRK08596 10 LRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDVA 89 (421)
T ss_pred hhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEEecccccc
Confidence 35678999999999999998543 68899999999999999999887765567999999987543 23689999999999
Q ss_pred cCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhc
Q 013641 104 PAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVES 182 (439)
Q Consensus 104 p~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 182 (439)
|+++ +.|+.+||.+.++ ||+|||||++|||++++++|.|+++|+ +.+..++++|.|+|+++||.|+ .|+++++++
T Consensus 90 p~~~~~~W~~~Pf~~~~~--~g~lyGrG~~D~Kgg~a~~l~a~~~l~-~~~~~~~~~v~~~~~~dEE~g~-~G~~~~~~~ 165 (421)
T PRK08596 90 EVSADEAWETNPFEPTIK--DGWLYGRGAADMKGGLAGALFAIQLLH-EAGIELPGDLIFQSVIGEEVGE-AGTLQCCER 165 (421)
T ss_pred CCCCccccccCCCCcEEE--CCEEEeccccccchHHHHHHHHHHHHH-HcCCCCCCcEEEEEEeccccCC-cCHHHHHhc
Confidence 9986 5799999999999 999999999999999999999999999 8888889999999999999987 899999987
Q ss_pred ccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCC----------CCcCCCCCC-cHHHHHHHHHHHHHccc
Q 013641 183 NEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAP----------GHGSRMFDN-GAMENLMKSVEMITKFR 251 (439)
Q Consensus 183 ~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~----------~Hs~~p~~g-nai~~~~~~i~~l~~~~ 251 (439)
+. ..|++++.+ |+. ..+.+.+|...++++++|.. .|++.|..| |||..|+++++.|+++.
T Consensus 166 ~~--~~d~~i~~e-----p~~--~~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~ 236 (421)
T PRK08596 166 GY--DADFAVVVD-----TSD--LHMQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELE 236 (421)
T ss_pred CC--CCCEEEECC-----CCC--CccccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHH
Confidence 53 357677763 543 23578899988888888764 699999888 99999999999998753
Q ss_pred cchhHHHHhccccC-CCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCC-----
Q 013641 252 ESQFDVVKAGRAAN-SEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIR----- 325 (439)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~----- 325 (439)
.. +..... .... ....+++++.|+||. ..|+||++|++++|+|++|+++.+++.++|++.+.+...
T Consensus 237 ~~-~~~~~~-~~~~~~~~~t~~v~~i~gG~------~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~ 308 (421)
T PRK08596 237 RH-WAVMKS-YPGFPPGTNTINPAVIEGGR------HAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVAAADPWL 308 (421)
T ss_pred HH-Hhhccc-CccCCCCCcceeeeeeeCCC------CCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHHhcChhh
Confidence 21 111100 0001 123689999999987 899999999999999999999999999999988864211
Q ss_pred ---CceEEEeec-cccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCC
Q 013641 326 ---NMSYEIIEK-GPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANT 401 (439)
Q Consensus 326 ---~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~ 401 (439)
.+.+++... .........|++ .++.++|+++.+.+++++.++..+.+....++||++++..+|+|++.|||+..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~- 386 (421)
T PRK08596 309 RENPPQFKWGGESMIEDRGEIFPSL-EIDSEHPAVKTLSSAHESVLSKNAILDMSTTVTDGGWFAEFGIPAVIYGPGTL- 386 (421)
T ss_pred hhCCceeEEecccccccccccCCCc-cCCCCchHHHHHHHHHHHHhCCCCeeeEEeeecchhhhhhcCCCEEEECCCcc-
Confidence 122221100 000001123443 35678999999999999987765455556789999999989999999999863
Q ss_pred CCCCCCCCCccchHhHHHHHHHHHHHHHHhhcccC
Q 013641 402 PILLHDHNEFLKDTVFLKGVEVYESVISSLSSFVE 436 (439)
Q Consensus 402 ~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~~~ 436 (439)
..+|++||+++++++.+++++|++++..+++++|
T Consensus 387 -~~~H~~~E~v~i~~~~~~~~~~~~~l~~~~~~~~ 420 (421)
T PRK08596 387 -EEAHSVNEKVEIEQLIEYTKVITAFIYEWCHTKK 420 (421)
T ss_pred -cccCCCCceEEHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3799999999999999999999999999998875
No 7
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-57 Score=423.95 Aligned_cols=407 Identities=49% Similarity=0.846 Sum_probs=356.7
Q ss_pred HHHhcccCCCCCCCchhHHHHHHhHhcCcCCCCCCCCc-hHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCC
Q 013641 14 AILFSFTSSGKSHEEREPITRFKQYLRFNTAHPNPNYT-APVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLP 92 (439)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~i~~l~~lv~ips~s~~~~e~-~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~ 92 (439)
.++.|....+.+......+..++++++||++.++++.. ++++|+....+.+|+.++.++..++.++++.+|.|++|..+
T Consensus 10 ~~l~~~~~~a~~~e~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~ 89 (420)
T KOG2275|consen 10 YVLRSGSVSAGPHEENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELP 89 (420)
T ss_pred HHhhcCCCCCCccccchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCcc
Confidence 45555555556666788999999999999998767777 99999999999999999888877789999999999999899
Q ss_pred cEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc
Q 013641 93 SILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG 172 (439)
Q Consensus 93 ~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~ 172 (439)
+|+|++|+||||+..+.|+++||+.... +||.|||||+.|||+-++++|+|++.|+ ..|++++++|.+.|.+|||.|+
T Consensus 90 silL~SH~DVVP~f~e~W~h~Pfsa~~~-~~g~IyaRGaqD~K~~~va~leAir~L~-~~g~kp~Rti~lsfvpDEEi~G 167 (420)
T KOG2275|consen 90 SILLNSHTDVVPVFREKWTHPPFSAFKD-EDGNIYARGAQDMKCVGVAYLEAIRNLK-ASGFKPKRTIHLSFVPDEEIGG 167 (420)
T ss_pred ceeeeccccccCCCcccCccCCcccccc-CCCcEEeccccchHhHHHHHHHHHHHHH-hcCCCcCceEEEEecCchhccC
Confidence 9999999999999988999999999873 4999999999999999999999999999 9999999999999999999997
Q ss_pred ccCHHHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHcccc
Q 013641 173 FDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRE 252 (439)
Q Consensus 173 ~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~ 252 (439)
..|++.+.+..++++...++++|+|+..+++...+++++||.++++|++.|.++|+|.|....++.++.++++++.++.+
T Consensus 168 ~~Gm~~fa~~~~~~~l~~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv~~~~~fr~ 247 (420)
T KOG2275|consen 168 HIGMKEFAKTEEFKKLNLGFILDEGGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEEFRE 247 (420)
T ss_pred cchHHHHhhhhhhcccceeEEecCCCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHHHhHH
Confidence 78999998856677777899999998777766789999999999999999999999998888999999999999998876
Q ss_pred chhHHHHhc-cccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhc-ccCCCceEE
Q 013641 253 SQFDVVKAG-RAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWA-PAIRNMSYE 330 (439)
Q Consensus 253 ~~~~~~~~~-~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~-~~~~~~~~~ 330 (439)
.+++.+.+. ....+..+|+|++.++||. +.|++|+.+++.+|+|..+..+.+++.+++.+.+. +...+++++
T Consensus 248 ~q~~~l~~~p~~~~~~vtT~Nv~~i~GGv------~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~~eg~t~~ 321 (420)
T KOG2275|consen 248 KQVDLLASGPKLALGDVTTINVGIINGGV------QSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEGVTLE 321 (420)
T ss_pred HHHHHhhcCCceeccceeEEeeeeeeccc------ccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhcCCceEEe
Confidence 666665544 2345577999999999998 99999999999999999999999999999954444 345567777
Q ss_pred EeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCC
Q 013641 331 IIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNE 410 (439)
Q Consensus 331 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE 410 (439)
+.... +..+++.++.+.++|++..+..++++.+++. .|..++|+||.+++++.|+|++.|.|+.......|.-||
T Consensus 322 f~~~~----~~~~~~~t~~~~s~p~w~~~~~a~~~~~~k~-~~~i~~gstdsr~~rn~gvp~~~fsp~~nt~~~~H~hnE 396 (420)
T KOG2275|consen 322 FSQKV----ILDYPPVTPTDDSNPFWTAFAGALKDEGGKG-YPEIGPGSTDSRHIRNEGVPAIGFSPIINTPMLLHDHNE 396 (420)
T ss_pred ccCcc----cCCCCCCCCCCCCChHHHHHHHHHHHhcCcc-ceeecccccccchhhhcCcchhcccccccccceecchhh
Confidence 77531 1044555556778999999999999998886 678899999999999999999999999877788999999
Q ss_pred ccchHhHHHHHHHHHHHHHHhhc
Q 013641 411 FLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 411 ~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
++..+...+++++|..++.+++.
T Consensus 397 ~l~~~~~l~gi~~~~~~i~~~~~ 419 (420)
T KOG2275|consen 397 FLNEKVFLRGIEIYYTIIVNLAN 419 (420)
T ss_pred hhCchhhhhhhhHHHHHHHhhcC
Confidence 99999999999999999888764
No 8
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-56 Score=457.34 Aligned_cols=383 Identities=21% Similarity=0.327 Sum_probs=304.8
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEe---cCCccEEEEEEcCCCCCCCcEEEeeeccc
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEF---VPNKPILLLTWPGSDPSLPSILFNSHLDS 102 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~---~~~~~nvi~~~~g~~~~~~~vll~aH~Dt 102 (439)
.+.++++++|++||+|||+++.++|.++++||.++|+++|++++.++. .++++||+++++|+++ +++|+|+|||||
T Consensus 34 ~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~-~~~lll~~H~Dt 112 (472)
T PRK09133 34 ADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDP-KKPILLLAHMDV 112 (472)
T ss_pred hhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCC-CCcEEEEeeccc
Confidence 578899999999999999986677899999999999999998754332 2357899999987654 489999999999
Q ss_pred ccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcc-cCcccCHHHHHh
Q 013641 103 VPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEE-IGGFDGMAKFVE 181 (439)
Q Consensus 103 vp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE-~g~~~G~~~~~~ 181 (439)
||++++.|+++||+++++ ||+|||||++|||++++++|.|++.|+ +.+..++++|.|+|++||| .|+ .|++.+++
T Consensus 113 Vp~~~~~W~~dPf~~~~~--dg~iyGRGa~D~Kg~~aa~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~~g~-~G~~~l~~ 188 (472)
T PRK09133 113 VEAKREDWTRDPFKLVEE--NGYFYGRGTSDDKADAAIWVATLIRLK-REGFKPKRDIILALTGDEEGTPM-NGVAWLAE 188 (472)
T ss_pred CCCChhcCCCCCCcceEe--CCEEEecCcccchHHHHHHHHHHHHHH-hcCCCCCCCEEEEEECccccCcc-chHHHHHH
Confidence 999877899999999999 999999999999999999999999999 8887889999999999999 665 89999997
Q ss_pred cccc-cccceEEEEecCC------cCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccc-
Q 013641 182 SNEF-RELNVGFVMDEGQ------ASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRES- 253 (439)
Q Consensus 182 ~~~~-~~~~~~~v~~~g~------~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~- 253 (439)
+... -..+++++ +.+. .+|+ ...++.+++|..+++|+++|+++|+|.|...|||..|++++..|+++...
T Consensus 189 ~~~~~~~~~~~i~-e~~~~~~~~~gept-~~~i~~g~kG~~~~~i~v~G~~~Hss~p~~~nAi~~l~~~l~~l~~~~~~~ 266 (472)
T PRK09133 189 NHRDLIDAEFALN-EGGGGTLDEDGKPV-LLTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAIYRLAAALSRLAAYRFPV 266 (472)
T ss_pred HHhhccCeEEEEE-CCCccccCCCCCce-EEEeeeecceeEEEEEEEecCCCCCCCCCCCChHHHHHHHHHHHhhCCCCC
Confidence 6431 12454444 3321 2344 24577999999999999999999999987559999999999999865210
Q ss_pred --------hhHHHH---------------h-----------cc-ccC--CCceEeeEeEEeecccCCCCcccccccCceE
Q 013641 254 --------QFDVVK---------------A-----------GR-AAN--SEVISVNLVYLKAGIPSPTGFVMNMQPSEAE 296 (439)
Q Consensus 254 --------~~~~~~---------------~-----------~~-~~~--~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~ 296 (439)
.++.+. . .. ... ...+|++++.++||. ..|+||++|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~------~~NvVP~~a~ 340 (472)
T PRK09133 267 MLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGH------AENALPQRAT 340 (472)
T ss_pred ccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCC------cCccCCCceE
Confidence 010000 0 00 000 124789999999987 8999999999
Q ss_pred EEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhC-CCCCcccc
Q 013641 297 AGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAG-GKLGKPEI 375 (439)
Q Consensus 297 ~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~~~ 375 (439)
+++|+|++|.++.+++.++|++.+++ ..+++++.. ...+. .+.+.+.++++.+++++++.+ +..+.+..
T Consensus 341 ~~lDiR~~p~~~~e~v~~~I~~~i~~--~~v~v~~~~-------~~~~~-~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~ 410 (472)
T PRK09133 341 ANVNCRIFPGDTIEAVRATLKQVVAD--PAIKITRIG-------DPSPS-PASPLRPDIMKAVEKLTAAMWPGVPVIPSM 410 (472)
T ss_pred EEEEEEeCCchhHHHHHHHHHHHhcC--CCEEEEEcc-------CCCCC-CCCCCCcHHHHHHHHHHHHHCCCCceeccc
Confidence 99999999999999999999998863 344443322 11121 224556899999999999875 44334455
Q ss_pred ccCCccHHHHHHhCCCEEE----EccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 376 LASTTDARYMRQLGIPVLG----FSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 376 ~~~~tD~~~~~~~gip~v~----~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
..++||++++...|+|++. |||+.. ..+|++||+++++++.+++++|.+++..+++
T Consensus 411 ~~ggtDa~~~~~~gip~~~~~~i~gp~~~--~~aH~~dE~v~i~~l~~~~~~l~~~l~~l~~ 470 (472)
T PRK09133 411 STGATDGRYLRAAGIPTYGVSGLFGDPDD--TFAHGLNERIPVASFYEGRDFLYELVKDLAG 470 (472)
T ss_pred cccccchHHHHhcCCCceeecCcccCccc--ccCCCCCCceeHHHHHHHHHHHHHHHHHhhc
Confidence 7789999999988999984 666654 3799999999999999999999999998865
No 9
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=1.6e-56 Score=449.02 Aligned_cols=380 Identities=20% Similarity=0.288 Sum_probs=307.0
Q ss_pred CchhHHHHHHhHhcCcCCCCC---CCCchHHHHHHHHHHhcCCc-eEEEEecC----C--ccEEEEEEcCCCCCCCcEEE
Q 013641 27 EEREPITRFKQYLRFNTAHPN---PNYTAPVSFLISQAQSIGLQ-FKTLEFVP----N--KPILLLTWPGSDPSLPSILF 96 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~---~~e~~~~~~l~~~l~~~G~~-~~~~~~~~----~--~~nvi~~~~g~~~~~~~vll 96 (439)
..++++++|++|++|||+|+. .+|.++++||.++|+++||+ ++.++..+ + ++||++.++|.. ++++|+|
T Consensus 3 ~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~-~~~~lll 81 (400)
T PRK13983 3 LRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGD-GKRTLWI 81 (400)
T ss_pred hHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCC-CCCeEEE
Confidence 457899999999999999853 35889999999999999998 77654321 1 689999997754 3479999
Q ss_pred eeecccccCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccC
Q 013641 97 NSHLDSVPAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDG 175 (439)
Q Consensus 97 ~aH~Dtvp~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G 175 (439)
+|||||||+++ +.|+.+||.+.++ ||+|||||++|||++++++|.|++.|+ +.+.+++++|.|+|+++||.|+..|
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~~--~g~lyGrG~~D~K~g~~a~l~a~~~l~-~~~~~~~~~v~~~~~~dEE~g~~~g 158 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVVK--DGKIYGRGSEDNGQGIVSSLLALKALM-DLGIRPKYNLGLAFVSDEETGSKYG 158 (400)
T ss_pred EeeccccCCCCcccccCCCCcceee--CCEEEecCccCccchHHHHHHHHHHHH-HhCCCCCCcEEEEEEeccccCCccc
Confidence 99999999975 6899999999998 999999999999999999999999999 8887899999999999999887459
Q ss_pred HHHHHhc--ccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHc-cc
Q 013641 176 MAKFVES--NEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITK-FR 251 (439)
Q Consensus 176 ~~~~~~~--~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~-~~ 251 (439)
++++++. +.+.+.|++++.+.+ .|++ ..++++++|..+++|+++|+++|+|.|+.| ||+..+++++..|.+ +.
T Consensus 159 ~~~~~~~~~~~~~~~d~~i~~~~~--~~~~-~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 235 (400)
T PRK13983 159 IQYLLKKHPELFKKDDLILVPDAG--NPDG-SFIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALH 235 (400)
T ss_pred HHHHHhhcccccCCCCEEEEecCC--CCCC-ceeEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999976 445556767776544 4664 468899999999999999999999999988 999999999999976 32
Q ss_pred cchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccC--CCceE
Q 013641 252 ESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAI--RNMSY 329 (439)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~--~~~~~ 329 (439)
. .+...... ......+++++.+.+|. ...|+||++|++++++|++|.++.+++.++|++.+++.. .+.++
T Consensus 236 ~-~~~~~~~~--~~~~~~~~~~~~~~~g~-----~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v 307 (400)
T PRK13983 236 E-KFNAKDPL--FDPPYSTFEPTKKEANV-----DNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKI 307 (400)
T ss_pred h-hhcccccc--cCCCCcccccceeecCC-----cCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCcce
Confidence 1 11110000 00112466777777663 178999999999999999999999999999999887532 23444
Q ss_pred EEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCC
Q 013641 330 EIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHN 409 (439)
Q Consensus 330 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~n 409 (439)
++... ....++. .++.|+++++.+.+++++..+..+.+....+++|++++...|+|++.|||+.. .+|++|
T Consensus 308 ~~~~~-----~~~~~~~-~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~td~~~~~~~gip~v~~Gp~~~---~~H~~n 378 (400)
T PRK13983 308 EVEIV-----QREQAPP-PTPPDSEIVKKLKRAIKEVRGIEPKVGGIGGGTVAAFLRKKGYPAVVWSTLDE---TAHQPN 378 (400)
T ss_pred eEEEe-----eccCCcc-CCCCCcHHHHHHHHHHHHhcCCCceeeeecCcHHHHHHHHcCCCEEEeCCccc---cCCCCC
Confidence 44431 1122332 35678999999999999987765565667789999999888999999999864 699999
Q ss_pred CccchHhHHHHHHHHHHHHHH
Q 013641 410 EFLKDTVFLKGVEVYESVISS 430 (439)
Q Consensus 410 E~i~~~~l~~~~~~~~~~l~~ 430 (439)
|+++++++.+++++|.+++.+
T Consensus 379 E~v~i~~l~~~~~~~~~~~~~ 399 (400)
T PRK13983 379 EYAKISNLIEDAKVFALLLLE 399 (400)
T ss_pred ceeeHHHHHHHHHHHHHHHhc
Confidence 999999999999999998864
No 10
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=9.9e-56 Score=439.48 Aligned_cols=364 Identities=18% Similarity=0.297 Sum_probs=298.8
Q ss_pred hHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC-C
Q 013641 30 EPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP-D 108 (439)
Q Consensus 30 ~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~-~ 108 (439)
+++++|++|++|||+| ++|.++++||.++|+++||+++.++. ++.+|+++++ |. ++|+|+|++|+||||+++ +
T Consensus 3 ~~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~ 76 (375)
T PRK13009 3 DVLELAQDLIRRPSVT--PDDAGCQDLLAERLEALGFTCERMDF-GDVKNLWARR-GT--EGPHLCFAGHTDVVPPGDLE 76 (375)
T ss_pred hHHHHHHHHhCCCCCC--CchhhHHHHHHHHHHHcCCeEEEecc-CCCcEEEEEe-cC--CCCEEEEEeecccCCCCCcc
Confidence 6789999999999998 67889999999999999999887654 3578999988 54 358999999999999976 6
Q ss_pred CCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccc--c
Q 013641 109 KWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEF--R 186 (439)
Q Consensus 109 ~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~ 186 (439)
.|+++||.++++ ||++||||++|||++++++|.|++.|+ +.+.+++++|.|+|+++||.++..|++.+++.... .
T Consensus 77 ~w~~~Pf~~~~~--~g~iyGrG~~D~Kgg~aa~l~a~~~l~-~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~ 153 (375)
T PRK13009 77 AWTSPPFEPTIR--DGMLYGRGAADMKGSLAAFVVAAERFV-AAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGE 153 (375)
T ss_pred cCCCCCCCcEEE--CCEEEecCCccChHHHHHHHHHHHHHH-HhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCc
Confidence 899999999998 999999999999999999999999999 77777889999999999998754699988764211 1
Q ss_pred ccceEEEEecCCcCCCC----cceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhc
Q 013641 187 ELNVGFVMDEGQASTND----DFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAG 261 (439)
Q Consensus 187 ~~~~~~v~~~g~~~p~~----~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~ 261 (439)
..|++++.+ |+. ...++++.+|..+++|+++|+++|++.|+.+ ||+..++.++..|+.+.... ..
T Consensus 154 ~~d~~i~~e-----p~~~~~~~~~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~---~~-- 223 (375)
T PRK13009 154 KIDYCIVGE-----PTSTERLGDVIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDE---GN-- 223 (375)
T ss_pred CCCEEEEcC-----CCcccCCCCeEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccC---CC--
Confidence 256555442 332 1257889999999999999999999999988 99999999999997643110 00
Q ss_pred cccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCC
Q 013641 262 RAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYK 341 (439)
Q Consensus 262 ~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
. .....+++++.|++|.. ..|+||++|++++++|++|.++.+++.++|++.+++. +++++++.. ..
T Consensus 224 -~-~~~~~~~~i~~i~~G~~-----~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~--~~~~~~~~~-----~~ 289 (375)
T PRK13009 224 -E-FFPPTSLQITNIDAGTG-----ATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDKH--GLDYTLEWT-----LS 289 (375)
T ss_pred -c-cCCCceEEEEEEecCCC-----CCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHhc--CCCeEEEEe-----cC
Confidence 0 01235789999998752 6799999999999999999999999999999988743 334444431 12
Q ss_pred CCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHH
Q 013641 342 GRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGV 421 (439)
Q Consensus 342 ~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~ 421 (439)
..|+. .+ ++++++.+.+++++..+..+.+...+++||++++...|+|++.|||+.. .+|++||+++++++.+++
T Consensus 290 ~~p~~--~~-~~~~~~~l~~a~~~~~g~~~~~~~~~g~tda~~~~~~g~p~v~~Gp~~~---~~H~~~E~i~~~~l~~~~ 363 (375)
T PRK13009 290 GEPFL--TP-PGKLVDAVVAAIEAVTGITPELSTSGGTSDARFIADYGAQVVEFGPVNA---TIHKVNECVSVADLEKLT 363 (375)
T ss_pred CCccc--CC-CcHHHHHHHHHHHHHhCCCceeeccCCCccHHHHHHcCCCeEEeccCcc---cCCCCCCcEEHHHHHHHH
Confidence 33443 23 3899999999999887765455566788999999989999999999864 699999999999999999
Q ss_pred HHHHHHHHHhh
Q 013641 422 EVYESVISSLS 432 (439)
Q Consensus 422 ~~~~~~l~~~~ 432 (439)
++|.+++..+.
T Consensus 364 ~~~~~~~~~~~ 374 (375)
T PRK13009 364 RIYERILERLL 374 (375)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 11
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=8.3e-56 Score=439.10 Aligned_cols=365 Identities=21% Similarity=0.333 Sum_probs=295.3
Q ss_pred HHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC-CCC
Q 013641 32 ITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP-DKW 110 (439)
Q Consensus 32 i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~-~~w 110 (439)
+++|++|++|||+| ++|.++++||+++|+++||+++.++.. +.+|+++++ |. ++|+|+|++|+||||+++ +.|
T Consensus 2 ~~~l~~lv~ips~s--~~e~~~~~~i~~~l~~~G~~~~~~~~~-~~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W 75 (370)
T TIGR01246 2 TELAKELISRPSVT--PNDAGCQDIIAERLEKLGFEIEWMHFG-DTKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQW 75 (370)
T ss_pred hHHHHHHhcCCCCC--cchHHHHHHHHHHHHHCCCEEEEEecC-CCceEEEEe-cC--CCcEEEEEccccccCCCCcccc
Confidence 68899999999998 678999999999999999998876543 568999987 43 358999999999999986 789
Q ss_pred CCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccc--ccc
Q 013641 111 SHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEF--REL 188 (439)
Q Consensus 111 ~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~~~ 188 (439)
+.+||++.++ ||++||||++|||++++++|.|++.|. +.+.+++++|+|+|+++||.++..|++.+++.... ...
T Consensus 76 ~~~p~~~~~~--dg~~yGrG~~D~Kgg~a~~l~a~~~l~-~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~ 152 (370)
T TIGR01246 76 SSPPFEPVER--DGKLYGRGAADMKGSLAAFIVAAERFV-KKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELI 152 (370)
T ss_pred ccCCCCcEEE--CCEEEecccccchHHHHHHHHHHHHHH-HhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCC
Confidence 9999999888 999999999999999999999999998 77777889999999999998754699988763211 135
Q ss_pred ceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccccCCC
Q 013641 189 NVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSE 267 (439)
Q Consensus 189 ~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 267 (439)
|++++.+.+...+. ...++++.+|..+++++++|+++|++.|+.+ ||+..|+++++.|.++... . . .....
T Consensus 153 d~~i~~ep~~~~~~-~~~i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~---~---~-~~~~~ 224 (370)
T TIGR01246 153 DYCIVGEPSSVKKL-GDVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWD---E---G-NEFFP 224 (370)
T ss_pred CEEEEcCCCCcccC-CceEEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhc---c---C-CccCC
Confidence 65554421110111 1347889999999999999999999999988 9999999999999764211 0 0 00112
Q ss_pred ceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccc
Q 013641 268 VISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMT 347 (439)
Q Consensus 268 ~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 347 (439)
.++++++.+++|.. ..|+||++|++++|+|++|.++.+++.++|++++++. ++.++++.. ....|..
T Consensus 225 ~~t~~i~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~--~~~~~v~~~-----~~~~p~~- 291 (370)
T TIGR01246 225 PTSLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQH--GLDYDLEWS-----LSGEPFL- 291 (370)
T ss_pred CCceEeeeeecCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHc--CCCEEEEEe-----cCCccee-
Confidence 35899999998852 6799999999999999999999999999999888643 334444431 1233433
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHH
Q 013641 348 LTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESV 427 (439)
Q Consensus 348 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~ 427 (439)
.+ ++++++.+.+++++..+..+.+...++++|++++...|+|++.|||+.. .+|++||+++++++.+++++|.++
T Consensus 292 -~~-~~~~~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~~~~g~p~~~~Gp~~~---~~H~~~E~i~i~~l~~~~~~~~~~ 366 (370)
T TIGR01246 292 -TN-DGKLIDKAREAIEETNGIKPELSTGGGTSDGRFIALMGAEVVEFGPVNA---TIHKVNECVSIEDLEKLSDVYQDL 366 (370)
T ss_pred -CC-CCHHHHHHHHHHHHHhCCCCceecCCCCchHHHHHHcCCCEEEecCCcc---cCCCCCceeEHHHHHHHHHHHHHH
Confidence 33 7899999999999887765455666788999999989999999999864 599999999999999999999999
Q ss_pred HHHh
Q 013641 428 ISSL 431 (439)
Q Consensus 428 l~~~ 431 (439)
+.++
T Consensus 367 l~~~ 370 (370)
T TIGR01246 367 LENL 370 (370)
T ss_pred HHhC
Confidence 9764
No 12
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=2.5e-56 Score=443.47 Aligned_cols=365 Identities=20% Similarity=0.296 Sum_probs=296.7
Q ss_pred HHHHhHhcCcCCCC-CCCCchHHHHHHHHHHhcCCceEEEEecCCcc----EEEEEEcCCCCCCCcEEEeeecccccCCC
Q 013641 33 TRFKQYLRFNTAHP-NPNYTAPVSFLISQAQSIGLQFKTLEFVPNKP----ILLLTWPGSDPSLPSILFNSHLDSVPAEP 107 (439)
Q Consensus 33 ~~l~~lv~ips~s~-~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~----nvi~~~~g~~~~~~~vll~aH~Dtvp~~~ 107 (439)
++|++|++|||+|+ +++|.++++||+++|+++|++++.+....+.. |+++.++|++ .+|+|+|++||||||+++
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ill~~H~DtVp~~~ 80 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNG-NEKSLIFNGHYDVVPAGD 80 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCC-CCCEEEEecccccccCCC
Confidence 68999999999663 47899999999999999999988765432333 4677777754 358999999999999975
Q ss_pred -CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccccc
Q 013641 108 -DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFR 186 (439)
Q Consensus 108 -~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 186 (439)
++|+++||++.++ +|+|||||++|||++++++|.|++.|+ +.+.+++++|.|+|+++||.|+ .|++.+++++.++
T Consensus 81 ~~~w~~~Pf~~~~~--~g~i~grG~~D~k~~~a~~l~a~~~l~-~~~~~~~~~i~~~~~~~EE~g~-~G~~~~~~~~~~~ 156 (375)
T TIGR01910 81 LELWKTDPFKPVEK--DGKLYGRGATDMKGGLVALLYALKAIR-EAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFK 156 (375)
T ss_pred hhhCcCCCCCcEEE--CCEEEecCccccchHHHHHHHHHHHHH-HcCCCCCccEEEEEEcCcccCc-hhHHHHHHcCCCC
Confidence 7899999999998 999999999999999999999999999 8777789999999999999987 8999999887665
Q ss_pred ccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccccC
Q 013641 187 ELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAAN 265 (439)
Q Consensus 187 ~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 265 (439)
+.|++++. +|++...++++.+|..+++|+++|+++|+|.|..+ |||..|++++++|+++.......... ...
T Consensus 157 ~~d~~i~~-----~~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~--~~~ 229 (375)
T TIGR01910 157 DADGVLIP-----EPSGGDNIVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSY--GFI 229 (375)
T ss_pred CCCEEEEC-----CCCCCCceEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc--ccc
Confidence 56766655 35544688999999999999999999999999988 99999999999998763211000000 001
Q ss_pred CCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccC--CCceEEEeeccccccCCCC
Q 013641 266 SEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAI--RNMSYEIIEKGPIRDYKGR 343 (439)
Q Consensus 266 ~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 343 (439)
...++++++.++||. ..|+||++|++++++|+.|.++.+++.++|++++++.. .++++++... ....
T Consensus 230 ~~~~t~~i~~i~gG~------~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~ 298 (375)
T TIGR01910 230 PGPITFNPGVIKGGD------WVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYENEPV-----VKWS 298 (375)
T ss_pred CCCccccceeEECCC------CcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhCCCe-----eeec
Confidence 124789999999987 89999999999999999999999999999999887532 3344444321 1122
Q ss_pred CccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHH
Q 013641 344 PLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEV 423 (439)
Q Consensus 344 p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~ 423 (439)
+++ ..+.++++++.+.+++++..+..+.+....++||++++.+.|+|++.|||+... ++|++||+++++++.+++++
T Consensus 299 ~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~E~v~~~~~~~~~~~ 375 (375)
T TIGR01910 299 GPN-ETPPDSRLVKALEAIIKKVRGIEPEVLVSTGGTDARFLRKAGIPSIVYGPGDLE--TAHQVNEYISIKNLVESTKV 375 (375)
T ss_pred CCc-CCCCCCHHHHHHHHHHHHHhCCCCeEeeeccchhHHHHHHcCCcEEEECCCCcc--ccCCCCceeEHHHHHHHhhC
Confidence 122 356789999999999998766544555677899999999999999999998532 79999999999999998864
No 13
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=8.5e-55 Score=442.81 Aligned_cols=388 Identities=21% Similarity=0.292 Sum_probs=300.7
Q ss_pred CCchhHHHHHHhHhcCcCCCCC----CCCchHHHHHHHHHHhcCCc-eEEEEecCCccEEEEEEcCCCCCCCcEEEeeec
Q 013641 26 HEEREPITRFKQYLRFNTAHPN----PNYTAPVSFLISQAQSIGLQ-FKTLEFVPNKPILLLTWPGSDPSLPSILFNSHL 100 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~----~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~ 100 (439)
.+.++++++|++||+|||+|+. .++.++++||+++|+++|+. ++.+. .++++||++++.|. +++|+|+|+||+
T Consensus 11 ~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~-~~~~~~l~a~~~~~-~~~~~lll~gH~ 88 (456)
T PRK08201 11 ERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIME-TAGHPIVYADWLHA-PGKPTVLIYGHY 88 (456)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEe-cCCCCEEEEEecCC-CCCCEEEEEecc
Confidence 4678999999999999999842 24678999999999999997 44443 33678999998664 346899999999
Q ss_pred ccccCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHH
Q 013641 101 DSVPAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKF 179 (439)
Q Consensus 101 Dtvp~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 179 (439)
||||+++ +.|+++||+++++ ||+|||||++||||+++++|.|+++|+ +.+..++++|.|++++|||.|+ .|+..+
T Consensus 89 DvVp~~~~~~W~~dPf~~~~~--~g~lyGRG~~DmKgglaa~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~-~g~~~~ 164 (456)
T PRK08201 89 DVQPVDPLNLWETPPFEPTIR--DGKLYARGASDDKGQVFMHLKAVEALL-KVEGTLPVNVKFCIEGEEEIGS-PNLDSF 164 (456)
T ss_pred CCcCCCchhcccCCCCceEeE--CCEEEEEecccCcHHHHHHHHHHHHHH-HhcCCCCCCEEEEEEcccccCC-ccHHHH
Confidence 9999986 5799999999999 999999999999999999999999998 7655678899999999999998 799999
Q ss_pred Hhcc--cccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCC--CcCCCC-CC-cHHHHHHHHHHHHHccccc
Q 013641 180 VESN--EFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPG--HGSRMF-DN-GAMENLMKSVEMITKFRES 253 (439)
Q Consensus 180 ~~~~--~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~--Hs~~p~-~g-nai~~~~~~i~~l~~~~~~ 253 (439)
+++. .+. .|++++.+.+...++ .+.++++++|..+++|+++|+++ |||.|. .+ |||..|++++++|+++...
T Consensus 165 l~~~~~~~~-~d~~ii~e~~~~~~~-~~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~ 242 (456)
T PRK08201 165 VEEEKDKLA-ADVVLISDTTLLGPG-KPAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGT 242 (456)
T ss_pred HHhhHHhcc-CCEEEEeCCCcCCCC-CEEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCCCCCC
Confidence 8753 232 466666543322222 35699999999999999999998 998765 55 9999999999999764210
Q ss_pred ----------------hhHHH----------Hhc--cc-cC-----------CCceEeeEeEEeecccCCCCcccccccC
Q 013641 254 ----------------QFDVV----------KAG--RA-AN-----------SEVISVNLVYLKAGIPSPTGFVMNMQPS 293 (439)
Q Consensus 254 ----------------~~~~~----------~~~--~~-~~-----------~~~~t~~~~~i~gg~~~~~g~~~n~iP~ 293 (439)
.+... +.. .. .+ ...+|++++.++||.. ++...|+||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~NvVP~ 320 (456)
T PRK08201 243 VAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQ--GEGTKTVIPA 320 (456)
T ss_pred EecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCC--CCCCceEECc
Confidence 00000 000 00 00 1135899999998862 2335799999
Q ss_pred ceEEEEeeecCCCCCHHHHHHHHHHHhccc-CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCc
Q 013641 294 EAEAGFDARLPPTVDPDLIRRRIAEEWAPA-IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGK 372 (439)
Q Consensus 294 ~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 372 (439)
+|++++|+|++|.++.+++.++|++.+++. ...+++++... ....|+. ++.++++++.+.+++++.++..+.
T Consensus 321 ~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~~~~~-----~~~~~~~--~~~~~~~~~~l~~a~~~~~g~~~~ 393 (456)
T PRK08201 321 EAHAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVTIRRF-----DKGPAFV--APIDHPAIQAAARAYEAVYGTEAA 393 (456)
T ss_pred ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEEC-----CCcCcee--cCCCCHHHHHHHHHHHHHhCCCce
Confidence 999999999999999999999999988742 23445555421 1233433 567899999999999998776422
Q ss_pred cccccCCc---cHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhh
Q 013641 373 PEILASTT---DARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLS 432 (439)
Q Consensus 373 ~~~~~~~t---D~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~ 432 (439)
. ...+++ |+.++...|+|++.|||+.. ..++|++||+++++++.+++++|.+++..+.
T Consensus 394 ~-~~~gg~~~~~~~~~~~~gip~v~~GpG~~-~~~~H~~nE~v~i~~l~~~~~~l~~~~~~~~ 454 (456)
T PRK08201 394 F-TRMGGSIPVVETFSSQLHIPIVLMGFGLP-SENFHAPNEHFHLENFDKGLRTLVEYWHQLA 454 (456)
T ss_pred e-cCCCCcHHHHHHHHHHhCCCEEEecCCCC-CCCCCCCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 2 233444 56777778999999999852 2379999999999999999999999999874
No 14
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-55 Score=441.73 Aligned_cols=378 Identities=26% Similarity=0.393 Sum_probs=296.6
Q ss_pred HHHHHHhHhcCcCCCCC----CCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCC
Q 013641 31 PITRFKQYLRFNTAHPN----PNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAE 106 (439)
Q Consensus 31 ~i~~l~~lv~ips~s~~----~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~ 106 (439)
++++|++||+|||+|+. ++|.++++||.++|+++|++++.++..++.+||+++++|++++.++|+|++|+||||++
T Consensus 1 ~~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~ 80 (426)
T PRK07906 1 VVDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAE 80 (426)
T ss_pred ChHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCC
Confidence 36899999999999832 57899999999999999999988766556789999998765445899999999999998
Q ss_pred CCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcc--c
Q 013641 107 PDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESN--E 184 (439)
Q Consensus 107 ~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~ 184 (439)
++.|+.+||++.++ ||+|||||++|||++++++|.|++.|+ +.+..++++|.|+|+++||.|+..|++.++++. .
T Consensus 81 ~~~W~~~Pf~~~~~--dg~iyGrG~~D~Kg~~a~~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~ 157 (426)
T PRK07906 81 AADWSVHPFSGEIR--DGYVWGRGAVDMKDMDAMMLAVVRHLA-RTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPEL 157 (426)
T ss_pred cccCccCCCCceee--CCEEEecCccccchHHHHHHHHHHHHH-HcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHh
Confidence 77899999999998 999999999999999999999999999 888888999999999999998646999998753 2
Q ss_pred ccccceEEEEecCCc---CCC--CcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccch-----
Q 013641 185 FRELNVGFVMDEGQA---STN--DDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRESQ----- 254 (439)
Q Consensus 185 ~~~~~~~~v~~~g~~---~p~--~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~----- 254 (439)
+..++ +++.+.+.. .|. ....++++++|..+++|+++|+++|++.|...|||..|++++..|+++....
T Consensus 158 ~~~~~-~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~~nAi~~~~~~l~~l~~~~~~~~~~~~ 236 (426)
T PRK07906 158 FEGVT-EAISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRLAEAVARIGRHRWPLVLTPT 236 (426)
T ss_pred ccchh-eEEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccCHH
Confidence 22222 223222211 111 1245889999999999999999999999865599999999999997653210
Q ss_pred ----hHHHHh--cc-----------ccCC---------CceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCC
Q 013641 255 ----FDVVKA--GR-----------AANS---------EVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVD 308 (439)
Q Consensus 255 ----~~~~~~--~~-----------~~~~---------~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~ 308 (439)
++.+.. .. ...+ ..+|++++.|+||. +.|+||++|++++|+|++|.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~------~~NviP~~~~~~~d~R~~p~~~ 310 (426)
T PRK07906 237 VRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGY------KVNVIPGTAEAVVDGRFLPGRE 310 (426)
T ss_pred HHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccC------ccccCCCceEEEEEEeECCCCc
Confidence 000000 00 0000 13689999999987 8899999999999999999886
Q ss_pred HHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCC-CCccccccCCccHHHHHH
Q 013641 309 PDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGK-LGKPEILASTTDARYMRQ 387 (439)
Q Consensus 309 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~~~~~~~tD~~~~~~ 387 (439)
+++.++|++.+. ..+++++.. ...|+. ++.++++++.+.+++++.++. .+.+....|+||++++..
T Consensus 311 -~~i~~~i~~~~~---~~v~~~~~~-------~~~~~~--~~~~~~~v~~l~~a~~~~~~~~~~~~~~~~ggtDa~~~~~ 377 (426)
T PRK07906 311 -EEFLATVDELLG---PDVEREWVH-------RDPALE--TPFDGPLVDAMNAALLAEDPGARVVPYMLSGGTDAKAFSR 377 (426)
T ss_pred -HHHHHHHHHHhC---CCeEEEEec-------CCCCCC--CCCCcHHHHHHHHHHHHHCCCCeEeeeeecccCcHHHHHh
Confidence 778888877663 234444432 233333 456899999999999987632 224445678899999999
Q ss_pred hCCCEEEEccCCCC-----CCCCCCCCCccchHhHHHHHHHHHHHHHHh
Q 013641 388 LGIPVLGFSPMANT-----PILLHDHNEFLKDTVFLKGVEVYESVISSL 431 (439)
Q Consensus 388 ~gip~v~~Gp~~~~-----~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~ 431 (439)
.|+|++.|||+... ..++|++||+++++++.+++++|++++.++
T Consensus 378 ~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~~ 426 (426)
T PRK07906 378 LGIRCYGFAPLRLPPDLDFAALFHGVDERVPVDALRFGVRVLDRFLRTC 426 (426)
T ss_pred cCCceEEEeccccCccccccccCcCCCCceeHHHHHHHHHHHHHHHHhC
Confidence 99999999997421 137999999999999999999999998764
No 15
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=5.4e-55 Score=435.69 Aligned_cols=367 Identities=18% Similarity=0.236 Sum_probs=295.0
Q ss_pred hhHHHHHHhHhcCcCCCCCCCC-chHHHHHHHHHHhcCCceEEEEec-CCccEEEEEEcCCCCCCCcEEEeeecccccCC
Q 013641 29 REPITRFKQYLRFNTAHPNPNY-TAPVSFLISQAQSIGLQFKTLEFV-PNKPILLLTWPGSDPSLPSILFNSHLDSVPAE 106 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~~e-~~~~~~l~~~l~~~G~~~~~~~~~-~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~ 106 (439)
.+++++|++||+|||+| +++ .++++||.++|+++|+++++++.. ++++||++++++. .+|+|+|+|||||||++
T Consensus 4 ~~~~~~l~~lv~i~S~s--~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~ 79 (385)
T PRK07522 4 MSSLDILERLVAFDTVS--RDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVD 79 (385)
T ss_pred hhHHHHHHHHhCCCCcC--CCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCC--CCCeEEEEeecccccCC
Confidence 57899999999999998 454 599999999999999998876533 2468999999653 25899999999999998
Q ss_pred CCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccccc
Q 013641 107 PDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFR 186 (439)
Q Consensus 107 ~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 186 (439)
++.|+.+||++.++ ||++||||++|||++++++|.|++.|+ +.+ ++++|.|+|++|||.|+ .|+++++++....
T Consensus 80 ~~~W~~~pf~~~~~--~g~i~GrG~~D~Kg~~a~~l~a~~~l~-~~~--~~~~i~~~~~~dEE~g~-~G~~~l~~~~~~~ 153 (385)
T PRK07522 80 GQAWTSDPFRLTER--DGRLYGRGTCDMKGFIAAALAAVPELA-AAP--LRRPLHLAFSYDEEVGC-LGVPSMIARLPER 153 (385)
T ss_pred CCCCCCCCCceEEE--CCEEEeccccccchHHHHHHHHHHHHH-hCC--CCCCEEEEEEeccccCC-ccHHHHHHHhhhc
Confidence 77899999999988 999999999999999999999999998 763 67899999999999987 8999999753211
Q ss_pred --ccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccc
Q 013641 187 --ELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRA 263 (439)
Q Consensus 187 --~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 263 (439)
..|++++. +|++ ..++++++|..+++|+++|+++|+|.|..+ ||+..|++++..|+++...... ......
T Consensus 154 ~~~~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-~~~~~~ 226 (385)
T PRK07522 154 GVKPAGCIVG-----EPTS-MRPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAA-PGPFDA 226 (385)
T ss_pred CCCCCEEEEc-----cCCC-CeeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhh-cCCCCc
Confidence 24544432 5764 678999999999999999999999998888 9999999999999875321100 000000
Q ss_pred cC-CCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcc--------cCCCceEEEeec
Q 013641 264 AN-SEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAP--------AIRNMSYEIIEK 334 (439)
Q Consensus 264 ~~-~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~--------~~~~~~~~~~~~ 334 (439)
.. ...++++++.++||. ..|+||++|++++++|+.|.++.+++.++|++.+++ ...+++++++..
T Consensus 227 ~~~~~~~t~~i~~i~gG~------~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~~~~~ 300 (385)
T PRK07522 227 LFDPPYSTLQTGTIQGGT------ALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHPEAAIEFEPL 300 (385)
T ss_pred CCCCCcceeEEeeeecCc------cccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcCCCcEEEEec
Confidence 01 113689999999887 889999999999999999999999999999988865 124455665542
Q ss_pred cccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccch
Q 013641 335 GPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKD 414 (439)
Q Consensus 335 ~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~ 414 (439)
..+|++ ..+.++++++.+++++.+ . ......+++|++++...|+|++.|||+... .+|++||++++
T Consensus 301 ------~~~~~~-~~~~~~~~v~~~~~~~~~----~-~~~~~~~~td~~~~~~~gip~v~~Gpg~~~--~~H~~~E~i~i 366 (385)
T PRK07522 301 ------SAYPGL-DTAEDAAAARLVRALTGD----N-DLRKVAYGTEAGLFQRAGIPTVVCGPGSIE--QAHKPDEFVEL 366 (385)
T ss_pred ------cCCCCC-CCCCCcHHHHHHHHHhCC----C-CcceEeeecchHHhccCCCCEEEECCCChh--hCCCCCccccH
Confidence 234443 245678899988776543 2 122355789999999889999999998543 79999999999
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 013641 415 TVFLKGVEVYESVISSLS 432 (439)
Q Consensus 415 ~~l~~~~~~~~~~l~~~~ 432 (439)
+++.+++++|.+++..++
T Consensus 367 ~~l~~~~~~~~~~~~~~~ 384 (385)
T PRK07522 367 AQLAACEAFLRRLLASLA 384 (385)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998775
No 16
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=5e-55 Score=432.82 Aligned_cols=358 Identities=16% Similarity=0.251 Sum_probs=288.3
Q ss_pred HHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecC--CccEEEEEEcCCCCCCCcEEEeeecccccCCCCCC
Q 013641 33 TRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVP--NKPILLLTWPGSDPSLPSILFNSHLDSVPAEPDKW 110 (439)
Q Consensus 33 ~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~--~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~~~w 110 (439)
++|++|++|||+|+ ..+.++++||.++|+++|++++.++..+ +++||++.+.|+ ++++|+|+|||||||++++.|
T Consensus 1 ~~l~~lv~i~S~s~-~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w 77 (364)
T TIGR01892 1 EILTKLVAFDSTSF-RPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAW 77 (364)
T ss_pred ChHHHhhCcCCcCC-ccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcC
Confidence 46899999999983 2347999999999999999988776543 368999999653 358999999999999987899
Q ss_pred CCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccce
Q 013641 111 SHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNV 190 (439)
Q Consensus 111 ~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 190 (439)
+++||++.++ ||+|||||++|||++++++|.|++.|+ +.+ ++++|.|+|+++||.|+ .|++++++++.+. .|.
T Consensus 78 ~~~Pf~~~~~--~~~i~GrG~~D~Kg~~a~~l~a~~~l~-~~~--~~~~v~~~~~~~EE~g~-~G~~~~~~~~~~~-~d~ 150 (364)
T TIGR01892 78 TRDPFRLTEK--DGRLYGRGTCDMKGFLACALAAAPDLA-AEQ--LKKPLHLALTADEEVGC-TGAPKMIEAGAGR-PRH 150 (364)
T ss_pred CCCCCcceee--CCEEEecCccccchHHHHHHHHHHHHH-hcC--cCCCEEEEEEeccccCC-cCHHHHHHhcCCC-CCE
Confidence 9999999998 999999999999999999999999998 653 67899999999999987 8999999876543 464
Q ss_pred EEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCce
Q 013641 191 GFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVI 269 (439)
Q Consensus 191 ~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (439)
+++. +|++ ..++.+.+|..+++|+++|+++|++.|+.| |||..++.++.+|+++...... ...........+
T Consensus 151 ~i~~-----ep~~-~~~~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-~~~~~~~~~~~~ 223 (364)
T TIGR01892 151 AIIG-----EPTR-LIPVRAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLR-EDLDEGFTPPYT 223 (364)
T ss_pred EEEC-----CCCC-ceeEEeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhcc-CCCCccCCCCCc
Confidence 4442 5764 566778999999999999999999999988 9999999999999865321000 000000001246
Q ss_pred EeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc---CCCceEEEeeccccccCCCCCcc
Q 013641 270 SVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA---IRNMSYEIIEKGPIRDYKGRPLM 346 (439)
Q Consensus 270 t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~ 346 (439)
+++++.++||. ..|+||++|++++|+|++|.++.+++.++|++.++.. .++++++++.. ..+|+.
T Consensus 224 ~~~i~~i~gg~------~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v~~~~~------~~~~~~ 291 (364)
T TIGR01892 224 TLNIGVIQGGK------AVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQIEVV------STDPGV 291 (364)
T ss_pred eEEEeeeecCC------CCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceEEEEEc------cCCCCc
Confidence 89999999887 8999999999999999999999999999999888642 34556665542 233443
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 013641 347 TLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYES 426 (439)
Q Consensus 347 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~ 426 (439)
..+.++++++.+.+++.+ . +...+++||++++...|+|++.|||+... .+|++||+++++++.+++++|+.
T Consensus 292 -~~~~~~~~v~~~~~~~~~----~--~~~~~~~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~E~i~i~~l~~~~~~~~~ 362 (364)
T TIGR01892 292 -NTEPDAELVAFLEELSGN----A--PEVVSYGTEAPQFQELGAEAVVCGPGDIR--QAHQPDEYVEIEDLVRCRAVLAR 362 (364)
T ss_pred -CCCCCCHHHHHHHHHhCC----C--CceecccccHHHHHhCCCcEEEECCCChH--hCCCCCceeeHHHHHHHHHHHHH
Confidence 245678999998765432 2 23456789999999899999999998643 69999999999999999999987
Q ss_pred HH
Q 013641 427 VI 428 (439)
Q Consensus 427 ~l 428 (439)
++
T Consensus 363 ~~ 364 (364)
T TIGR01892 363 LV 364 (364)
T ss_pred hC
Confidence 63
No 17
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1.4e-54 Score=432.47 Aligned_cols=366 Identities=20% Similarity=0.272 Sum_probs=293.6
Q ss_pred hhHHHHHHhHhcCcCCCCCC-----CCchHHHHHHHHHHhcCCceEEEEec--CCccEEEEEEcCCCCCCCcEEEeeecc
Q 013641 29 REPITRFKQYLRFNTAHPNP-----NYTAPVSFLISQAQSIGLQFKTLEFV--PNKPILLLTWPGSDPSLPSILFNSHLD 101 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~-----~e~~~~~~l~~~l~~~G~~~~~~~~~--~~~~nvi~~~~g~~~~~~~vll~aH~D 101 (439)
++++++|++|++|||+|... ++.++++||+++|+++|++++.++.. ++++|+++++ |.+ .++|+|+||||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~-g~~--~~~il~~~H~D 81 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASL-GSG--EGGLLLAGHTD 81 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEe-CCC--CCeEEEEeeec
Confidence 47999999999999998422 13579999999999999998877653 2467999999 543 36899999999
Q ss_pred cccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHh
Q 013641 102 SVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVE 181 (439)
Q Consensus 102 tvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 181 (439)
|||+++..|+.+||++.++ ||+|||||++|||++++++|.|++.|+ +.+ ++++|.|+|+++||.|+ .|++++++
T Consensus 82 vvp~~~~~W~~~Pf~~~~~--~g~i~GrG~~D~Kg~~a~~l~a~~~l~-~~~--~~~~i~~~~~~~EE~g~-~G~~~~~~ 155 (383)
T PRK05111 82 TVPFDEGRWTRDPFTLTEH--DGKLYGLGTADMKGFFAFILEALRDID-LTK--LKKPLYILATADEETSM-AGARAFAE 155 (383)
T ss_pred eecCCCCcCcCCCCccEEE--CCEEEecccccccHHHHHHHHHHHHHh-hcC--CCCCeEEEEEeccccCc-ccHHHHHh
Confidence 9999877899999999988 999999999999999999999999998 654 56899999999999987 89999998
Q ss_pred cccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHh
Q 013641 182 SNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKA 260 (439)
Q Consensus 182 ~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~ 260 (439)
++.++ .|++++. +|+. ..++++++|..+++|+++|+++|++.|+.| |||..+++++..|+.+.........
T Consensus 156 ~~~~~-~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~- 227 (383)
T PRK05111 156 ATAIR-PDCAIIG-----EPTS-LKPVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYH- 227 (383)
T ss_pred cCCCC-CCEEEEc-----CCCC-CceeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 76554 4655442 5764 566789999999999999999999999988 9999999999999765321000000
Q ss_pred ccccC-CCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeecccc
Q 013641 261 GRAAN-SEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPI 337 (439)
Q Consensus 261 ~~~~~-~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~ 337 (439)
...+ ...+|++++.++||. ..|+||++|++++|+|+.|.++.+++.++|++.+++. ..+.++++...
T Consensus 228 -~~~~~~~~~t~~i~~i~gg~------~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~~--- 297 (383)
T PRK05111 228 -NPAFTVPYPTLNLGHIHGGD------APNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRITVAPL--- 297 (383)
T ss_pred -CccCCCCCCceeEeeeecCC------cCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeEEEecc---
Confidence 0000 124789999999987 8999999999999999999999999999999888752 23445555421
Q ss_pred ccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhH
Q 013641 338 RDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVF 417 (439)
Q Consensus 338 ~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l 417 (439)
....|+. ..+.++++++.+.+++ +.. +....+++|++++...|+|++.|||+... ++|++||+++++++
T Consensus 298 --~~~~~~~-~~~~~~~l~~~~~~~~----g~~--~~~~~~~~Da~~~~~~g~p~v~~G~g~~~--~~H~~~E~v~~~~l 366 (383)
T PRK05111 298 --HPPIPGY-ECPADHQLVRVVEKLL----GHK--AEVVNYCTEAPFIQQLGCPTLVLGPGSIE--QAHQPDEYLELSFI 366 (383)
T ss_pred --ccCCCCc-CCCCCCHHHHHHHHHh----CCC--CceeeeeccHHHHHhcCCCEEEECCCchH--hCcCCCCcccHHHH
Confidence 1233433 2456788888887655 222 23346789999999889999999998633 79999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 013641 418 LKGVEVYESVISSLS 432 (439)
Q Consensus 418 ~~~~~~~~~~l~~~~ 432 (439)
.+++++|++++..++
T Consensus 367 ~~~~~i~~~~~~~~~ 381 (383)
T PRK05111 367 KPTRELLRQLIHHFC 381 (383)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998875
No 18
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-54 Score=437.43 Aligned_cols=384 Identities=19% Similarity=0.206 Sum_probs=296.3
Q ss_pred hhHHHHHHhHhcCcCCCCCCC-CchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC
Q 013641 29 REPITRFKQYLRFNTAHPNPN-YTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP 107 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~~-e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~ 107 (439)
++++++|++||+|||+|+.++ +.++++||+++|+++|+.++.++.. +++||++++++ + .+++|+|+||+||||+++
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~-~~~~lia~~~~-~-~~~~vll~gH~DvVp~~~ 78 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTK-GHPVVYGEINV-G-AKKTLLIYNHYDVQPVDP 78 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecC-CCCEEEEEecC-C-CCCEEEEEecccCCCCCc
Confidence 578999999999999984322 2799999999999999999877653 57899999853 3 358999999999999986
Q ss_pred -CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccc-c
Q 013641 108 -DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNE-F 185 (439)
Q Consensus 108 -~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~-~ 185 (439)
+.|+++||++.++ ||+|||||++|||++++++|.|++.|+ +.+ .++++|.|+|++|||.|+ .|+++++++.. .
T Consensus 79 ~~~W~~~Pf~~~~~--dg~lyGRGa~DmKgglaa~l~A~~~l~-~~~-~~~~~i~~~~~~dEE~g~-~g~~~~l~~~~~~ 153 (436)
T PRK06446 79 LSEWKRDPFSATIE--NGRIYARGASDNKGTLMARLFAIKHLI-DKH-KLNVNVKFLYEGEEEIGS-PNLEDFIEKNKNK 153 (436)
T ss_pred cccccCCCCceEEE--CCEEEEEeccCCcHHHHHHHHHHHHHH-HcC-CCCCCEEEEEEcccccCC-HhHHHHHHHHHHH
Confidence 7899999999999 999999999999999999999999997 655 577899999999999998 89999987631 1
Q ss_pred cccceEEEEecCCcCCCCcceEEeeccceEEEEEEEee--CCCCcCCCCCC-cHHHHHHHHHHHHHccccc-----hh--
Q 013641 186 RELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKG--APGHGSRMFDN-GAMENLMKSVEMITKFRES-----QF-- 255 (439)
Q Consensus 186 ~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G--~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~-----~~-- 255 (439)
-+.|+++ +..+...+++.+.++++++|..+++++++| +++|+|.|..+ |||..|++++++|.+.... .+
T Consensus 154 ~~~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~ 232 (436)
T PRK06446 154 LKADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDD 232 (436)
T ss_pred hCCCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcC
Confidence 1246443 332222244445899999999999999999 99999998887 9999999999999764200 00
Q ss_pred ---------HHHH----------h--cc------------ccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeee
Q 013641 256 ---------DVVK----------A--GR------------AANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDAR 302 (439)
Q Consensus 256 ---------~~~~----------~--~~------------~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR 302 (439)
.... . +. ......+|++++.+++|.. ++...|+||++|++++|+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~--~~~~~nvvP~~a~~~~d~R 310 (436)
T PRK06446 233 VRELTEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYT--GKGSKTIVPSRAFAKLDFR 310 (436)
T ss_pred CCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeecccc--CCCCCcEecCceEEEEEEE
Confidence 0000 0 00 0011247899999988742 1126799999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCcccc-ccCCcc
Q 013641 303 LPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEI-LASTTD 381 (439)
Q Consensus 303 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~~~tD 381 (439)
++|.++.+++.++|++++.+....+++++.. ..+|+. ++.++++++.+.+++++.++..+.... ..|++|
T Consensus 311 ~~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~-------~~~p~~--~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d 381 (436)
T PRK06446 311 LVPNQDPYKIFELLKKHLQKVGFNGEIIVHG-------FEYPVR--TSVNSKVVKAMIESAKRVYGTEPVVIPNSAGTQP 381 (436)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCeEEEEcC-------Ccceee--cCCCCHHHHHHHHHHHHHhCCCCceecCCCCcch
Confidence 9999999999999999987533334443332 234443 456799999999999998766423322 335568
Q ss_pred HHHHH-HhCCCEEE--EccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 382 ARYMR-QLGIPVLG--FSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 382 ~~~~~-~~gip~v~--~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
+++|. .+|+|++. ||++.. ..++|++||+++++++.+++++|.+++..++.
T Consensus 382 ~~~~~~~~gip~v~~~~g~g~~-~~~~H~~dE~i~i~~l~~~~~~~~~~~~~~~~ 435 (436)
T PRK06446 382 MGLFVYKLGIRDIVSAIGVGGY-YSNAHAPNENIRIDDYYKAIKHTEEFLKLYST 435 (436)
T ss_pred HHHHHHHhCCCcceeecccCCC-CcCCcCCCCCcCHHHHHHHHHHHHHHHHHhcC
Confidence 77774 47999764 666542 23799999999999999999999999987753
No 19
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=3.8e-54 Score=431.85 Aligned_cols=367 Identities=17% Similarity=0.235 Sum_probs=297.2
Q ss_pred CCchhHHHHHHhHhcCcCCCCC-CCCchHHHHHHHHHHhcCCceEEEEecC-CccEEEEEEcCCCCCCCcEEEeeecccc
Q 013641 26 HEEREPITRFKQYLRFNTAHPN-PNYTAPVSFLISQAQSIGLQFKTLEFVP-NKPILLLTWPGSDPSLPSILFNSHLDSV 103 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~-~~~nvi~~~~g~~~~~~~vll~aH~Dtv 103 (439)
++.++++++|++|++|||+|+. .++.++++||+++|+++|+++++++..+ ..+||+++++|+ +.|+|+|+||||||
T Consensus 34 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~--~~~~ill~~H~D~V 111 (410)
T PRK06133 34 QEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGT--GKRRIMLIAHMDTV 111 (410)
T ss_pred HhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCC--CCceEEEEeecCcc
Confidence 4668999999999999999843 2245899999999999999988776432 357999999765 34899999999999
Q ss_pred cCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcc
Q 013641 104 PAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESN 183 (439)
Q Consensus 104 p~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 183 (439)
|+++ .|+.+||. ++ ||+|||||++|||++++++|.|++.|+ +.+.+++++|.|+|+++||.|+ .|++.++++.
T Consensus 112 p~~~-~w~~~Pf~--~~--~~~iyGrG~~D~kgg~a~~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~-~G~~~~~~~~ 184 (410)
T PRK06133 112 YLPG-MLAKQPFR--ID--GDRAYGPGIADDKGGVAVILHALKILQ-QLGFKDYGTLTVLFNPDEETGS-PGSRELIAEL 184 (410)
T ss_pred CCCC-ccCCCCEE--EE--CCEEECCccccchHHHHHHHHHHHHHH-HcCCCCCCCEEEEEECCcccCC-ccHHHHHHHH
Confidence 9964 59999996 66 999999999999999999999999999 8887778999999999999987 8999999764
Q ss_pred cccccceEEEEecCCcCCCCc-ceEEeeccceEEEEEEEeeCCCCcC-CCCCC-cHHHHHHHHHHHHHccccchhHHHHh
Q 013641 184 EFRELNVGFVMDEGQASTNDD-FRVFYADRSPWHLIIRAKGAPGHGS-RMFDN-GAMENLMKSVEMITKFRESQFDVVKA 260 (439)
Q Consensus 184 ~~~~~~~~~v~~~g~~~p~~~-~~i~~~~~G~~~~~v~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~ 260 (439)
.. +.|.+++.+ |+.. ..++++.+|..+++|+++|+++|+| .|+.| |||..+++++..|+++...
T Consensus 185 ~~-~~d~~i~~e-----p~~~~~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~~------- 251 (410)
T PRK06133 185 AA-QHDVVFSCE-----PGRAKDALTLATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGDP------- 251 (410)
T ss_pred hc-cCCEEEEeC-----CCCCCCCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccCC-------
Confidence 32 457666663 4432 3688899999999999999999986 69888 9999999999999875321
Q ss_pred ccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc-CCCceEEEeecccccc
Q 013641 261 GRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA-IRNMSYEIIEKGPIRD 339 (439)
Q Consensus 261 ~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~ 339 (439)
....+++++.++||. ..|+||++|++++++|+.|.++.+++.++|++.+++. ..+++++++..
T Consensus 252 -----~~~~t~~~~~i~gG~------~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~----- 315 (410)
T PRK06133 252 -----AKGTTLNWTVAKAGT------NRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKNKLVPDTEVTLRFE----- 315 (410)
T ss_pred -----CCCeEEEeeEEECCC------CCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhccCCCCeEEEEEec-----
Confidence 022578999999987 8999999999999999999999999999999998752 34555555532
Q ss_pred CCCCCccccCCCCChHHHHHHHHHHHhCCCCCcc--ccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhH
Q 013641 340 YKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKP--EILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVF 417 (439)
Q Consensus 340 ~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~--~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l 417 (439)
..+|++.....+.++++.+.+++++.+... .+ ....+++|++++...|+|++++|++... .++|++||+++++++
T Consensus 316 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~g~tDa~~~~~~gip~v~~g~G~~~-~~aH~~nE~i~i~~~ 392 (410)
T PRK06133 316 -RGRPPLEANAASRALAEHAQGIYGELGRRL-EPIDMGTGGGTDAAFAAGSGKAAVLEGFGLVG-FGAHSNDEYIELNSI 392 (410)
T ss_pred -cccCCcccCcchHHHHHHHHHHHHHcCCCc-cccccCCCCCchHHHHHhcCCCceEecccCCC-CCCCCCCcEEEcccH
Confidence 234443222233468888888887754332 22 4567899999999999999985544322 369999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 013641 418 LKGVEVYESVISSLSS 433 (439)
Q Consensus 418 ~~~~~~~~~~l~~~~~ 433 (439)
..++++|++++.++++
T Consensus 393 ~~~~~~~~~~~~~~~~ 408 (410)
T PRK06133 393 VPRLYLLTRMIMELSR 408 (410)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999999875
No 20
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=2.6e-54 Score=432.08 Aligned_cols=375 Identities=22% Similarity=0.281 Sum_probs=303.0
Q ss_pred CCchhHHHHHHhHhcCcCCCCC-CCCchHHHHHHHHHHhcCCceEEEEecCC--------ccEEEEEEcCCCCCCCcEEE
Q 013641 26 HEEREPITRFKQYLRFNTAHPN-PNYTAPVSFLISQAQSIGLQFKTLEFVPN--------KPILLLTWPGSDPSLPSILF 96 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~~--------~~nvi~~~~g~~~~~~~vll 96 (439)
...++++++|++|++|||+|++ .++.++++||+++|+++|++++.+....+ ++||++.. +.+ .|+|+|
T Consensus 3 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ill 79 (394)
T PRK08651 3 AMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARR-GSG--NPHLHF 79 (394)
T ss_pred hhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEe-CCC--CceEEE
Confidence 3568999999999999999843 45679999999999999999887654322 35678866 433 389999
Q ss_pred eeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCH
Q 013641 97 NSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGM 176 (439)
Q Consensus 97 ~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~ 176 (439)
+|||||||+++..|+.+||.+.++ ||++||||++|||++++++|.|++.|+ +.+ +++|.|+|+++||.|+ .|+
T Consensus 80 ~~HlDtvp~~~~~~~~~Pf~~~~~--~~~~~grG~~D~k~~~~~~l~a~~~l~-~~~---~~~v~~~~~~~EE~g~-~G~ 152 (394)
T PRK08651 80 NGHYDVVPPGEGWSVNVPFEPKVK--DGKVYGRGASDMKGGIAALLAAFERLD-PAG---DGNIELAIVPDEETGG-TGT 152 (394)
T ss_pred EeeeeeecCCCCccccCCCCcEEE--CCEEEecCccccchHHHHHHHHHHHHH-hcC---CCCEEEEEecCccccc-hhH
Confidence 999999999854469999999998 999999999999999999999999998 765 6899999999999987 899
Q ss_pred HHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchh
Q 013641 177 AKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQF 255 (439)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~ 255 (439)
+++++++.++ .|.+++. +|++...++++.+|..+++|+++|+++|++.|+.| |||..|++++++|.++....
T Consensus 153 ~~~~~~~~~~-~d~~i~~-----~~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~- 225 (394)
T PRK08651 153 GYLVEEGKVT-PDYVIVG-----EPSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTI- 225 (394)
T ss_pred HHHHhccCCC-CCEEEEe-----cCCCCCceEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhh-
Confidence 9999876553 5655655 35543378899999999999999999999999888 99999999999997653211
Q ss_pred HHHHhc-c-ccCCCceEeeEeE--EeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceE
Q 013641 256 DVVKAG-R-AANSEVISVNLVY--LKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSY 329 (439)
Q Consensus 256 ~~~~~~-~-~~~~~~~t~~~~~--i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~ 329 (439)
.... . ......++++++. ++||. +.|+||++|++++++|+.|.++.+++.++|++.+++. ..++++
T Consensus 226 --~~~~~~~~~~~~~~~~~ig~~~i~gG~------~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~ 297 (394)
T PRK08651 226 --KSKYEYDDERGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEV 297 (394)
T ss_pred --hccccccccccCCCceeecceeeeCCC------CCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCe
Confidence 1000 0 0011235677777 88876 8999999999999999999999999999999888752 234445
Q ss_pred EEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCC
Q 013641 330 EIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHN 409 (439)
Q Consensus 330 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~n 409 (439)
++... ...|+. ..+.++++++.+.+++++..+..+.+....+++|+++|...|+|++.|||+... .+|++|
T Consensus 298 ~i~~~------~~~~~~-~~~~~~~l~~~~~~a~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~ 368 (394)
T PRK08651 298 EFEIT------PFSEAF-VTDPDSELVKALREAIREVLGVEPKKTISLGGTDARFFGAKGIPTVVYGPGELE--LAHAPD 368 (394)
T ss_pred eEEEe------cccCCc-cCCCCCHHHHHHHHHHHHHhCCCCceeeecCcccHHHHhhCCCcEEEECCCChH--hcCCCC
Confidence 55432 223333 245678999999999999766544555677899999999999999999998643 799999
Q ss_pred CccchHhHHHHHHHHHHHHHHhhcc
Q 013641 410 EFLKDTVFLKGVEVYESVISSLSSF 434 (439)
Q Consensus 410 E~i~~~~l~~~~~~~~~~l~~~~~~ 434 (439)
|+++++++.+++++|.+++..+++.
T Consensus 369 E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 369 EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999998653
No 21
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=5.6e-54 Score=429.72 Aligned_cols=377 Identities=16% Similarity=0.188 Sum_probs=302.1
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA 105 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~ 105 (439)
.+.++++++|++|++|||+| ++|.+++++|.++|+++||++..++ ..+|+++.+.| + .|+|+|++|+||||+
T Consensus 12 ~~~~~~~~~l~~lv~ips~s--~~e~~~a~~l~~~l~~~G~~~~~~~---~~~n~~a~~~~-~--~~~i~~~~H~DtVp~ 83 (399)
T PRK13004 12 KYKADMTRFLRDLIRIPSES--GDEKRVVKRIKEEMEKVGFDKVEID---PMGNVLGYIGH-G--KKLIAFDAHIDTVGI 83 (399)
T ss_pred HHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCcEEEEc---CCCeEEEEECC-C--CcEEEEEeccCccCC
Confidence 46688999999999999997 7899999999999999999865442 46799999854 2 389999999999999
Q ss_pred CC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccc
Q 013641 106 EP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNE 184 (439)
Q Consensus 106 ~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 184 (439)
++ +.|..+||.+.++ ||+|||||++|||++++++|.|++.|+ +.+.+++++|.++|+++||.++..|.+.++++..
T Consensus 84 ~~~~~w~~~P~~~~~~--~g~lyGrG~~D~Kg~~aa~l~a~~~l~-~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~~ 160 (399)
T PRK13004 84 GDIKNWDFDPFEGEED--DGRIYGRGTSDQKGGMASMVYAAKIIK-DLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEEDK 160 (399)
T ss_pred CChhhcccCCCccEEE--CCEEEeCCccccchHHHHHHHHHHHHH-hcCCCCCCeEEEEEEcccccCcchhHHHHHHhcC
Confidence 75 6899999999998 999999999999999999999999999 8887889999999999999643267888887644
Q ss_pred ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccc
Q 013641 185 FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRA 263 (439)
Q Consensus 185 ~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 263 (439)
++ .|++++. +|+ ...++++++|..+++|+++|+++|++.|+.| |||..|++++..|+.+.... . . .
T Consensus 161 ~~-~d~~i~~-----e~~-~~~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~-~--~---~ 227 (399)
T PRK13004 161 IK-PDFVVIT-----EPT-DLNIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNL-K--E---D 227 (399)
T ss_pred CC-CCEEEEc-----cCC-CCceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhcccc-c--c---C
Confidence 43 5766665 455 3678999999999999999999999999988 99999999999998764321 0 0 0
Q ss_pred cCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeec-cccc----
Q 013641 264 ANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEK-GPIR---- 338 (439)
Q Consensus 264 ~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~-~~~~---- 338 (439)
......+++++.+++|.+ +.|+||++|++++|+|++|.++.+++.++|++..+....+.++++... .+.+
T Consensus 228 ~~~~~~~~~v~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~ 302 (399)
T PRK13004 228 PFLGKGTLTVSDIFSTSP-----SRCAVPDSCAISIDRRLTVGETWESVLAEIRALPAVKKANAKVSMYNYDRPSYTGLV 302 (399)
T ss_pred CcCCCceEEEeeeecCCC-----CCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHhhccccceEEEecccCCCccccc
Confidence 011125788888886632 899999999999999999999999999999888542223334433211 0000
Q ss_pred -c-CCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHH-HHhCCCEEEEccCCCCCCCCCCCCCccchH
Q 013641 339 -D-YKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYM-RQLGIPVLGFSPMANTPILLHDHNEFLKDT 415 (439)
Q Consensus 339 -~-~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~-~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~ 415 (439)
. ...+|++ .++.++++++.+.+++++..+..+.+...++++|++.+ +.+|+|++.|||+... .+|++||+++++
T Consensus 303 ~~~~~~~p~~-~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~~~td~~~~~~~~Gip~v~~Gpg~~~--~aH~~nE~i~i~ 379 (399)
T PRK13004 303 YPTECYFPTW-LYPEDHEFVKAAVEAYKGLFGKAPEVDKWTFSTNGVSIAGRAGIPTIGFGPGKEP--LAHAPNEYTWKE 379 (399)
T ss_pred cccccccccc-ccCCCCHHHHHHHHHHHHHhCCCCeecccccccCCeEEehhcCCCEEEECCCccc--ccCCCCceeEHH
Confidence 0 0123443 35678999999999999987654344456678887655 5689999999998642 699999999999
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 013641 416 VFLKGVEVYESVISSLSSF 434 (439)
Q Consensus 416 ~l~~~~~~~~~~l~~~~~~ 434 (439)
++.+++++|+.++..+++.
T Consensus 380 ~l~~~~~~~~~~~~~~~~~ 398 (399)
T PRK13004 380 QLVKAAAMYAAIPKSLLKK 398 (399)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999853
No 22
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=5.9e-54 Score=429.11 Aligned_cols=375 Identities=14% Similarity=0.135 Sum_probs=297.6
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA 105 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~ 105 (439)
+..+++++++++|++|||++ ++|.++++||.++|+++|+++.... ..+|+++.+ |.+ .++|+|++||||||+
T Consensus 10 ~~~~~~~~~~~~lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~---~~~n~~~~~-g~~--~~~l~l~~H~DtVp~ 81 (395)
T TIGR03320 10 KYRGDMIRFLRDLVAIPSES--GDEKRVAERIKEEMEKLGFDKVEID---PMGNVLGYI-GHG--PKLIAMDAHIDTVGI 81 (395)
T ss_pred HHHHHHHHHHHHHHcCCCCC--CchHHHHHHHHHHHHHhCCcEEEEC---CCCCEEEEe-CCC--CcEEEEEecccccCC
Confidence 35688999999999999997 7889999999999999999743332 457899988 532 478999999999999
Q ss_pred CC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccc
Q 013641 106 EP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNE 184 (439)
Q Consensus 106 ~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 184 (439)
++ +.|+++||.+.++ ||+|||||++|||++++++|.|+++|+ +.+..++++|.|+++++||.++..+.+.++++..
T Consensus 82 ~~~~~w~~~Pf~~~~~--~g~lyGrG~~D~Kg~~aa~l~A~~~l~-~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03320 82 GDSKQWQFDPYEGYED--EEIIYGRGASDQEGGIASMVYAGKIIK-DLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDG 158 (395)
T ss_pred CCccccccCCCceEEE--CCEEEecCccCccchHHHHHHHHHHHH-HcCCCCCceEEEEecccccccCchHHHHHHHhcC
Confidence 76 6899999999998 999999999999999999999999999 8887778899999999999754245566776544
Q ss_pred ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccc
Q 013641 185 FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRA 263 (439)
Q Consensus 185 ~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 263 (439)
+. .|++++. +|+ ...++++.+|..+++|+++|+++|++.|+.| |||..++.++..|+++.... .. .
T Consensus 159 ~~-~d~~iv~-----ep~-~~~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~----~~--~ 225 (395)
T TIGR03320 159 IK-PEFVVIT-----EPT-DMNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL----VE--D 225 (395)
T ss_pred CC-CCEEEEc-----CCC-ccceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhh----cC--C
Confidence 43 5766654 476 3678999999999999999999999999988 99999999999998753210 00 0
Q ss_pred cCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeecc-ccc----
Q 013641 264 ANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKG-PIR---- 338 (439)
Q Consensus 264 ~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~---- 338 (439)
......+++++.+.+|.+ +.|+||++|++++|+|+.|.++.+++.++|++.+......+++++.... |..
T Consensus 226 ~~~~~~t~~v~~i~~g~~-----~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (395)
T TIGR03320 226 PFLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAKVEMYNYDRPSYTGLV 300 (395)
T ss_pred cccCcCceeeeeeecCCC-----CcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhhcCCCceEeeeccCcccccccc
Confidence 011125788999987642 7899999999999999999999999999999887532223444433210 000
Q ss_pred -c-CCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccH-HHHHHhCCCEEEEccCCCCCCCCCCCCCccchH
Q 013641 339 -D-YKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDA-RYMRQLGIPVLGFSPMANTPILLHDHNEFLKDT 415 (439)
Q Consensus 339 -~-~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~-~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~ 415 (439)
. ....|++ .++.++|+++.+.+++++.++..+.....++++|+ +++...|+|++.|||+... ++|++|||++++
T Consensus 301 ~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~--~aH~~nE~v~i~ 377 (395)
T TIGR03320 301 YPTECYFPTW-VLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDED--QAHAPNEKTWKE 377 (395)
T ss_pred cccccccCcc-ccCCCCHHHHHHHHHHHHHhCCCCceeecceecccceehhhcCCCEEEECCCchh--hccCCCcEEEHH
Confidence 0 0123333 25678999999999999987765344445677887 5777789999999998643 799999999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q 013641 416 VFLKGVEVYESVISSLS 432 (439)
Q Consensus 416 ~l~~~~~~~~~~l~~~~ 432 (439)
++.+++++|++++.+++
T Consensus 378 ~l~~~~~~~~~~~~~~~ 394 (395)
T TIGR03320 378 DLVRAAAMYAAIPTVYL 394 (395)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999886
No 23
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-53 Score=436.81 Aligned_cols=383 Identities=23% Similarity=0.352 Sum_probs=296.0
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCC-------chHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEee
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNY-------TAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNS 98 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e-------~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~a 98 (439)
.+.++++++|++|++|||+|+.++. .++++||+++|+.+|+.++..... ..|+++.++|.+++.++|+|+|
T Consensus 41 ~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~--~~~vv~~~~g~~~~~~~ill~g 118 (486)
T PRK08262 41 VDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVG--GHSLLYTWKGSDPSLKPIVLMA 118 (486)
T ss_pred CCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEEC--CccEEEEEECCCCCCCeEEEEC
Confidence 5789999999999999999853222 248889999999999988776653 3678888877655448999999
Q ss_pred ecccccCCC---CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccC
Q 013641 99 HLDSVPAEP---DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDG 175 (439)
Q Consensus 99 H~Dtvp~~~---~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G 175 (439)
|+||||+++ ..|+++||+++++ ||+|||||++||||+++++|.|++.|+ +.+.+++++|.|+|+++||.|+ .|
T Consensus 119 H~DvVp~~~~~~~~W~~~Pf~~~~~--dg~lyGRG~~D~Kg~~aa~L~A~~~l~-~~~~~l~~~I~llf~~dEE~g~-~G 194 (486)
T PRK08262 119 HQDVVPVAPGTEGDWTHPPFSGVIA--DGYVWGRGALDDKGSLVAILEAAEALL-AQGFQPRRTIYLAFGHDEEVGG-LG 194 (486)
T ss_pred cccccCCCCCCcccCccCCCceEee--CCEEEecCccccchhHHHHHHHHHHHH-HcCCCCCCeEEEEEecccccCC-cC
Confidence 999999974 4799999999998 999999999999999999999999999 8887889999999999999998 79
Q ss_pred HHHHHhcccccccceEEEEecCC----------cCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHH
Q 013641 176 MAKFVESNEFRELNVGFVMDEGQ----------ASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVE 245 (439)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~g~----------~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~ 245 (439)
++++++.......+..++++.+. ..|+ ..+.++++|..+++|+++|+++|++.|...|||..|+++|.
T Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~--~~i~~~~kG~~~~~i~v~G~~~Hss~p~~~nai~~l~~~l~ 272 (486)
T PRK08262 195 ARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPV--ALIGVAEKGYATLELTARATGGHSSMPPRQTAIGRLARALT 272 (486)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceE--EeeEEeeeeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 99888642111123334443221 1232 35778899999999999999999998765799999999999
Q ss_pred HHHcccc---------chhHHHHhc---------------------------cccCCCceEeeEeEEeecccCCCCcccc
Q 013641 246 MITKFRE---------SQFDVVKAG---------------------------RAANSEVISVNLVYLKAGIPSPTGFVMN 289 (439)
Q Consensus 246 ~l~~~~~---------~~~~~~~~~---------------------------~~~~~~~~t~~~~~i~gg~~~~~g~~~n 289 (439)
.|+++.. ..++.+... .......+|++++.|+||. ..|
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~------~~N 346 (486)
T PRK08262 273 RLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSP------KDN 346 (486)
T ss_pred HHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCC------ccc
Confidence 9987421 011111000 0000124789999999986 889
Q ss_pred cccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCC
Q 013641 290 MQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGK 369 (439)
Q Consensus 290 ~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~ 369 (439)
+||++|++++|+|++|.++.+++.++|++.+++. ++++++... ...|+. .++.++++++.+.+++++.++.
T Consensus 347 vIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~--~~~v~~~~~------~~~~~~-~~~~~~~lv~~l~~a~~~~~g~ 417 (486)
T PRK08262 347 VLPQRATATVNFRILPGDSVESVLAHVRRAVADD--RVEIEVLGG------NSEPSP-VSSTDSAAYKLLAATIREVFPD 417 (486)
T ss_pred cCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccC--ceEEEEecC------CCCCCC-CCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999988743 445544421 123332 2456789999999999998864
Q ss_pred -CCccccccCCccHHHHHHhC-----CCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 370 -LGKPEILASTTDARYMRQLG-----IPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 370 -~~~~~~~~~~tD~~~~~~~g-----ip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
...+....++||+++|.... +|.+.|||+.. ..+|++||+++++++.+++++|.+++..+++
T Consensus 418 ~~~~~~~~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~--~~~Ht~dE~i~i~~l~~~~~i~~~~l~~~~~ 485 (486)
T PRK08262 418 VVVAPYLVVGATDSRHYSGISDNVYRFSPLRLSPEDL--ARFHGTNERISVANYARMIRFYYRLIENAAG 485 (486)
T ss_pred CccccceecccccHHHHHHhcCCeEEECCccCCcccc--cCCCCCCCceeHHHHHHHHHHHHHHHHHhhc
Confidence 22334467899999998653 34445566543 3699999999999999999999999998875
No 24
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=9.9e-54 Score=427.34 Aligned_cols=376 Identities=15% Similarity=0.143 Sum_probs=298.4
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA 105 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~ 105 (439)
+..+++++++++|++|||++ ++|.++++||.++|+++|+++.... ..+|+++.+ |.+ .++|+|++|+||||+
T Consensus 10 ~~~~~~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~g~~~~~~~---~~~~v~~~~-g~~--~~~l~l~~H~DtVp~ 81 (395)
T TIGR03526 10 KYRGDMIRFLRDLVAIPSES--GDEGRVALRIKQEMEKLGFDKVEID---PMGNVLGYI-GHG--PKLIAMDAHIDTVGI 81 (395)
T ss_pred HHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCceEEEc---CCCcEEEEe-CCC--CCEEEEEeeccccCC
Confidence 34578999999999999997 6889999999999999999753332 357899988 543 478999999999999
Q ss_pred CC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccc
Q 013641 106 EP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNE 184 (439)
Q Consensus 106 ~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 184 (439)
++ +.|+++||.+.++ ||++||||++|||++++++|.|++.|+ +.+..+++++.|+++++||.++..|.+.++++..
T Consensus 82 ~~~~~W~~~Pf~~~~~--~g~lyGrG~~D~Kg~~aa~l~a~~~l~-~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03526 82 GDMDQWQFDPYEGYED--EEIIYGRGASDQEGGIASMVYAGKIIK-DLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDK 158 (395)
T ss_pred CCcccccCCCCceEEE--CCEEEecCccccchhHHHHHHHHHHHH-HcCCCCCceEEEEEecccccCCcHhHHHHHhccC
Confidence 76 6899999999998 999999999999999999999999999 8887778899999999999532257777777654
Q ss_pred ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccc
Q 013641 185 FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRA 263 (439)
Q Consensus 185 ~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 263 (439)
++ .|++++. +|+. ..++++++|..+++|+++|+++|++.|+.| |||..|++++..|+++.... ..+
T Consensus 159 ~~-~d~~i~~-----ep~~-~~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~---~~~--- 225 (395)
T TIGR03526 159 IK-PEFVVIT-----EPTD-MNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL---VED--- 225 (395)
T ss_pred CC-CCEEEec-----CCCC-ceEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhh---cCC---
Confidence 43 5655554 5763 678999999999999999999999999988 99999999999998753210 000
Q ss_pred cCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeecc-ccc----
Q 013641 264 ANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKG-PIR---- 338 (439)
Q Consensus 264 ~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~---- 338 (439)
......+++++.+++|.+ ..|+||++|++++++|++|.++.+++.++|++.++.....+++++.... +.+
T Consensus 226 ~~~~~~~~~v~~i~~g~~-----~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (395)
T TIGR03526 226 PFLGKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAEVEMYEYDRPSYTGLV 300 (395)
T ss_pred cccCccceeeeeeecCCC-----CCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHhcCCcceEEEeccccccccccc
Confidence 011125889999987642 7899999999999999999999999999999887632223344432210 000
Q ss_pred --cCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccH-HHHHHhCCCEEEEccCCCCCCCCCCCCCccchH
Q 013641 339 --DYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDA-RYMRQLGIPVLGFSPMANTPILLHDHNEFLKDT 415 (439)
Q Consensus 339 --~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~-~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~ 415 (439)
.....|++ .++.++++++.+.+++++.++..+.....++++|+ +++...|+|++.|||+.. ..+|++||+++++
T Consensus 301 ~~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~--~~aH~~dE~i~i~ 377 (395)
T TIGR03526 301 YPTECYFPTW-VLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDE--DQAHAPNEKTWKE 377 (395)
T ss_pred cccccccCcc-ccCCCCHHHHHHHHHHHHHhCCCCceeeeeeecccceehhhcCCCEEEECCcch--hhccCCCceEEHH
Confidence 00123333 25678999999999999988765344445677787 566778999999999863 3799999999999
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 013641 416 VFLKGVEVYESVISSLSS 433 (439)
Q Consensus 416 ~l~~~~~~~~~~l~~~~~ 433 (439)
++.+++++|++++..+++
T Consensus 378 ~l~~~~~~~~~~~~~~~~ 395 (395)
T TIGR03526 378 DLVKAAAMYAAIPTVYLQ 395 (395)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998763
No 25
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-54 Score=431.54 Aligned_cols=363 Identities=15% Similarity=0.219 Sum_probs=295.8
Q ss_pred CCchhHHHHHHhHhcCcCCCCC-CCCchHHHHHHHHHHhcCCceEEEEecC--------------CccEEEEEEcCCCCC
Q 013641 26 HEEREPITRFKQYLRFNTAHPN-PNYTAPVSFLISQAQSIGLQFKTLEFVP--------------NKPILLLTWPGSDPS 90 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~--------------~~~nvi~~~~g~~~~ 90 (439)
.+.++++++|++|++|||+|.+ .++.++++||+++|+++|+.++.++..+ ..+||++++++..
T Consensus 14 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~~-- 91 (402)
T PRK07338 14 DRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPEA-- 91 (402)
T ss_pred hhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCCC--
Confidence 4678999999999999999732 1256899999999999999988664321 2269999996532
Q ss_pred CCcEEEeeecccccCCCCCCCCCCCcee--EeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCc
Q 013641 91 LPSILFNSHLDSVPAEPDKWSHPPFSAF--HSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDE 168 (439)
Q Consensus 91 ~~~vll~aH~Dtvp~~~~~w~~~Pf~~~--~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~E 168 (439)
+++|+|+|||||||+++ +||++. ++ ||+|||||++|||++++++|.|+++|+ +.+.+++++|.|+|++||
T Consensus 92 ~~~lll~gH~DvVp~~~-----~Pf~~~~~~~--~g~lyGrG~~DmKgg~aa~l~a~~~l~-~~~~~~~~~i~~~~~~dE 163 (402)
T PRK07338 92 PRQVLLTGHMDTVFPAD-----HPFQTLSWLD--DGTLNGPGVADMKGGIVVMLAALLAFE-RSPLADKLGYDVLINPDE 163 (402)
T ss_pred CccEEEEeecCccCCCC-----CcccCCeEee--CCEEECCcHHhhhHHHHHHHHHHHHHH-hcCCCCCCCEEEEEECCc
Confidence 36899999999999963 799876 66 999999999999999999999999999 888777889999999999
Q ss_pred ccCcccCHHHHHhcccccccceEEEEecCCcCCCC-cceEEeeccceEEEEEEEeeCCCCcCC-CCCC-cHHHHHHHHHH
Q 013641 169 EIGGFDGMAKFVESNEFRELNVGFVMDEGQASTND-DFRVFYADRSPWHLIIRAKGAPGHGSR-MFDN-GAMENLMKSVE 245 (439)
Q Consensus 169 E~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~-~~~i~~~~~G~~~~~v~v~G~~~Hs~~-p~~g-nai~~~~~~i~ 245 (439)
|.|+ .|++.++++... ..+++++++ |+. ...+..+.+|..+++|+++|+++|++. |..| |||..|+++++
T Consensus 164 E~g~-~g~~~~~~~~~~-~~~~~i~~e-----p~~~~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~ 236 (402)
T PRK07338 164 EIGS-PASAPLLAELAR-GKHAALTYE-----PALPDGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELAL 236 (402)
T ss_pred ccCC-hhhHHHHHHHhc-cCcEEEEec-----CCCCCCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHHHHHH
Confidence 9997 899999986532 356667763 432 246788899999999999999999996 7878 99999999999
Q ss_pred HHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--
Q 013641 246 MITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA-- 323 (439)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~-- 323 (439)
.|+++... ....|++++.++||. ..|+||++|++++++|+.|.++.+++.++|++.+++.
T Consensus 237 ~l~~l~~~------------~~~~t~~vg~i~gG~------~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~~ 298 (402)
T PRK07338 237 ALHALNGQ------------RDGVTVNVAKIDGGG------PLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVNQ 298 (402)
T ss_pred HHHhhhcc------------CCCcEEEEEEEecCC------CCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhcccc
Confidence 99875321 023689999999987 8999999999999999999999999999999988753
Q ss_pred CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEE-EEccCCCCC
Q 013641 324 IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVL-GFSPMANTP 402 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v-~~Gp~~~~~ 402 (439)
..++++++... ..+|++.....+.++++.++++.++.+... .....++++|++++...|+|++ .|||+..
T Consensus 299 ~~~~~~~~~~~------~~~~p~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~tDa~~~~~~giP~v~~~Gpg~~-- 369 (402)
T PRK07338 299 RHGVSLHLHGG------FGRPPKPIDAAQQRLFEAVQACGAALGLTI-DWKDSGGVCDGNNLAAAGLPVVDTLGVRGG-- 369 (402)
T ss_pred CCCeEEEEEcc------ccCCCCCCCcchHHHHHHHHHHHHHcCCCc-ccccCCccchHHHHhhcCCCeEeccCCCCC--
Confidence 34556655431 233443212234479999999888764432 4455678999999988899999 7999854
Q ss_pred CCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 403 ILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 403 ~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
.+|++|||++++++.+++++|+.++..++.
T Consensus 370 -~~H~~~E~v~i~~l~~~~~~~~~~l~~~~~ 399 (402)
T PRK07338 370 -NIHSEDEFVILDSLVERAQLSALILMRLAQ 399 (402)
T ss_pred -CCCCccceEehhhHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999998864
No 26
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=2e-53 Score=421.42 Aligned_cols=364 Identities=14% Similarity=0.205 Sum_probs=292.0
Q ss_pred CCCCchhHHHHHHhHhcCcCCCCCC-CCchHHHHHHHHHHhcCCceEEEEecCC-ccEEEEEEcCCCCCCCcEEEeeecc
Q 013641 24 KSHEEREPITRFKQYLRFNTAHPNP-NYTAPVSFLISQAQSIGLQFKTLEFVPN-KPILLLTWPGSDPSLPSILFNSHLD 101 (439)
Q Consensus 24 ~~~~~~~~i~~l~~lv~ips~s~~~-~e~~~~~~l~~~l~~~G~~~~~~~~~~~-~~nvi~~~~g~~~~~~~vll~aH~D 101 (439)
-+.+.++++++|++|++|||++... +..++++|+.++|+++|++++.++..++ .+||++++++.++++|+|+|+||||
T Consensus 6 ~~~~~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~D 85 (376)
T PRK07473 6 LPFDSEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMD 85 (376)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCC
Confidence 3567899999999999999998321 1247788999999999999987754333 2589999865433468999999999
Q ss_pred cccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHh
Q 013641 102 SVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVE 181 (439)
Q Consensus 102 tvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~ 181 (439)
|||+.+ .|..+||. ++ ||+|||||++|||++++++|.|+++|+ +.+..++.+|.|+|++|||.|+ .|++.+++
T Consensus 86 tV~~~~-~~~~~p~~--~~--~g~lyGrG~~D~Kgglaa~l~A~~~l~-~~~~~~~~~v~~~~~~dEE~g~-~g~~~~~~ 158 (376)
T PRK07473 86 TVHPVG-TLEKLPWR--RE--GNKCYGPGILDMKGGNYLALEAIRQLA-RAGITTPLPITVLFTPDEEVGT-PSTRDLIE 158 (376)
T ss_pred CCCCCC-CccCCCeE--EE--CCEEEcCchhhchHHHHHHHHHHHHHH-HcCCCCCCCEEEEEeCCcccCC-ccHHHHHH
Confidence 998753 69889995 66 999999999999999999999999999 8887777899999999999997 89999998
Q ss_pred cccccccceEEEEecCCcCCCC-cceEEeeccceEEEEEEEeeCCCCcC-CCCCC-cHHHHHHHHHHHHHccccchhHHH
Q 013641 182 SNEFRELNVGFVMDEGQASTND-DFRVFYADRSPWHLIIRAKGAPGHGS-RMFDN-GAMENLMKSVEMITKFRESQFDVV 258 (439)
Q Consensus 182 ~~~~~~~~~~~v~~~g~~~p~~-~~~i~~~~~G~~~~~v~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~ 258 (439)
++.. ..|++++. +|+. ...++.+++|..+++|+++|+++|++ .|..| |||..|++++.+|+++..
T Consensus 159 ~~~~-~~d~~iv~-----ep~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------ 226 (376)
T PRK07473 159 AEAA-RNKYVLVP-----EPGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------ 226 (376)
T ss_pred Hhhc-cCCEEEEe-----CCCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------
Confidence 6533 35777776 4553 24789999999999999999999987 58888 999999999999987532
Q ss_pred HhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccc
Q 013641 259 KAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIR 338 (439)
Q Consensus 259 ~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (439)
...+++++.|+||. ..|+||++|++.++.|....+..+++.+++.+.+. ...++++++...
T Consensus 227 --------~~~~~~vg~i~gg~------~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~---- 287 (376)
T PRK07473 227 --------EDCTFSVGIVHGGQ------WVNCVATTCTGEALSMAKRQADLDRGVARMLALSG-TEDDVTFTVTRG---- 287 (376)
T ss_pred --------CCceEeEeeEEcCC------CCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC-cCCCeEEEEEcc----
Confidence 12578999999987 89999999999999998888888888888776655 224455555421
Q ss_pred cCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEE-EccCCCCCCCCCCCCCccchHhH
Q 013641 339 DYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLG-FSPMANTPILLHDHNEFLKDTVF 417 (439)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~-~Gp~~~~~~~~H~~nE~i~~~~l 417 (439)
...|+......+.++++.++++.+..+... .....+++||++++...|+|++. |||++. ++|++|||++++++
T Consensus 288 --~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~tDa~~~~~~giP~v~g~Gpg~~---~~H~~dE~v~i~~l 361 (376)
T PRK07473 288 --VTRPVWEPDAGTMALYEKARAIAGQLGLSL-PHGSAGGGSDGNFTGAMGIPTLDGLGVRGA---DYHTLNEHIEVDSL 361 (376)
T ss_pred --ccCCCCCCChhHHHHHHHHHHHHHHcCCCC-ccccCccccHhhhHHhcCCCEEEeccCCCC---CCCCCCceEecccH
Confidence 233443222223468888888876655443 44456789999999988999995 999864 58999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 013641 418 LKGVEVYESVISSL 431 (439)
Q Consensus 418 ~~~~~~~~~~l~~~ 431 (439)
.+++++|++++..+
T Consensus 362 ~~~~~vl~~~l~~~ 375 (376)
T PRK07473 362 AERGRLMAGLLATL 375 (376)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 27
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=4.8e-53 Score=430.69 Aligned_cols=390 Identities=20% Similarity=0.244 Sum_probs=302.3
Q ss_pred CCchhHHHHHHhHhcCcCCCCCC----CCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecc
Q 013641 26 HEEREPITRFKQYLRFNTAHPNP----NYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLD 101 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~D 101 (439)
.+.++++++|++|++|||+|+.. ++.++++||+++|+++|++++.++.. +++||+++++|+++++|+|+|+||+|
T Consensus 14 ~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~-~~~~l~a~~~g~~~~~~~lll~gH~D 92 (464)
T PRK09104 14 ANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTP-GHPMVVAHHEGPTGDAPHVLFYGHYD 92 (464)
T ss_pred HhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCEEEEEecCCCCCCCEEEEEeccc
Confidence 46789999999999999998422 24688999999999999998876543 57899999987544569999999999
Q ss_pred cccCCC-CCCCCCCCceeEeCCCC-----EEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccC
Q 013641 102 SVPAEP-DKWSHPPFSAFHSPETG-----QIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDG 175 (439)
Q Consensus 102 tvp~~~-~~w~~~Pf~~~~~~~dg-----~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G 175 (439)
|||+++ +.|+++||+++++ |+ +|||||++||||+++++|.|+++|+ +.+..++++|.|+|+++||.|+ .|
T Consensus 93 vVp~~~~~~W~~~Pf~~~~~--~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~-~g 168 (464)
T PRK09104 93 VQPVDPLDLWESPPFEPRIK--ETPDGRKVIVARGASDDKGQLMTFVEACRAWK-AVTGSLPVRVTILFEGEEESGS-PS 168 (464)
T ss_pred CCCCCCcccCCCCCCcceEe--cCcCCcceEEEecccCCcHHHHHHHHHHHHHH-HhcCCCCCcEEEEEECccccCC-cc
Confidence 999986 6799999999998 65 5999999999999999999999999 7665678899999999999998 78
Q ss_pred HHHHHhcccc-cccceEEEEecCCcCCCCcceEEeeccceEEEEEEEee--CCCCcCC-CCCC-cHHHHHHHHHHHHHcc
Q 013641 176 MAKFVESNEF-RELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKG--APGHGSR-MFDN-GAMENLMKSVEMITKF 250 (439)
Q Consensus 176 ~~~~~~~~~~-~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G--~~~Hs~~-p~~g-nai~~~~~~i~~l~~~ 250 (439)
+++++++... ...|++++.+.+...+. .+.++++++|..+++++++| +++|+|. |..+ |||..|++++.+|.+.
T Consensus 169 ~~~~l~~~~~~~~~d~~iv~E~~~~~~~-~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~ 247 (464)
T PRK09104 169 LVPFLEANAEELKADVALVCDTGMWDRE-TPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAGLHDE 247 (464)
T ss_pred HHHHHHhhHHhcCCCEEEEeCCCCCCCC-CeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHhccCC
Confidence 9888875321 13577777765433232 36799999999999999999 6899997 5667 9999999999999763
Q ss_pred ccc-------------------hhHH--------HHh-ccc------------cCCCceEeeEeEEeecccCCCCccccc
Q 013641 251 RES-------------------QFDV--------VKA-GRA------------ANSEVISVNLVYLKAGIPSPTGFVMNM 290 (439)
Q Consensus 251 ~~~-------------------~~~~--------~~~-~~~------------~~~~~~t~~~~~i~gg~~~~~g~~~n~ 290 (439)
... .++. ... +.. .....+|++++.++||.. ++...|+
T Consensus 248 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~nv 325 (464)
T PRK09104 248 TGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYT--GEGFKTV 325 (464)
T ss_pred CCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCC--CCCCccE
Confidence 210 0000 000 000 000136899999998862 1125799
Q ss_pred ccCceEEEEeeecCCCCCHHHHHHHHHHHhccc-CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCC
Q 013641 291 QPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA-IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGK 369 (439)
Q Consensus 291 iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~ 369 (439)
||++|++++|+|++|.++.+++.++|++.+... ....++++... ...|+. .++.++++++.+.+++++.++.
T Consensus 326 vP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~~~~~v~~~~~------~~~~~~-~~~~~~~~v~~l~~~~~~~~~~ 398 (464)
T PRK09104 326 IPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLPADCSVEFHDH------GGSPAI-ALPYDSPALAAAKAALSDEWGK 398 (464)
T ss_pred ecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEec------CCCCce-ECCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999988642 23445555431 233333 2567899999999999998776
Q ss_pred CCccccccCCc--cHHH-HHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhh
Q 013641 370 LGKPEILASTT--DARY-MRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLS 432 (439)
Q Consensus 370 ~~~~~~~~~~t--D~~~-~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~ 432 (439)
.+.... .+++ |++. .+..|+|++.|||+... .++|++||+++++++.+++++|.+++..++
T Consensus 399 ~~~~~~-~~g~~~~~~~~~~~~gip~v~~g~G~~~-~~aH~~nE~i~i~~l~~~~~~~~~ll~~~~ 462 (464)
T PRK09104 399 PAVLIG-SGGSIPIVGDFKRILGMDSLLVGFGLDD-DRIHSPNEKYDLESFHKGIRSWARILAALA 462 (464)
T ss_pred CceecC-CCCcHHHHHHHHHHhCCCEEEecCCCCC-CCCcCCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 433222 3444 3454 44579999999997432 379999999999999999999999998876
No 28
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=2e-52 Score=424.44 Aligned_cols=386 Identities=16% Similarity=0.217 Sum_probs=296.1
Q ss_pred CCchhHHHHHHhHhcCcCCCCC----CCCchHHHHHHHHHHhcCC-ceEEEEecCCccEEEEEEcCCCCCCCcEEEeeec
Q 013641 26 HEEREPITRFKQYLRFNTAHPN----PNYTAPVSFLISQAQSIGL-QFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHL 100 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~----~~e~~~~~~l~~~l~~~G~-~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~ 100 (439)
.+.++++++|++||+|||+|+. .++.++++||.++|+++|+ +++.++ .++++||+++++|+. ++++|+|+||+
T Consensus 15 ~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~nl~a~~~~~~-~~~~lll~gH~ 92 (449)
T PRK07907 15 ELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS-ADGAPAVIGTRPAPP-GAPTVLLYAHH 92 (449)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe-cCCCCEEEEEecCCC-CCCEEEEEccc
Confidence 4678999999999999999853 2367899999999999998 677665 346799999997643 46899999999
Q ss_pred ccccCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHH
Q 013641 101 DSVPAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKF 179 (439)
Q Consensus 101 Dtvp~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 179 (439)
||||+++ ..|+++||+++++ ||+|||||++|||++++++|.|+++|. .+++++|.|+++++||.|+ .|++++
T Consensus 93 DvVp~~~~~~W~~~Pf~~~~~--~g~lyGrG~~D~Kg~~aa~l~a~~~l~----~~~~~~i~~~~~~dEE~g~-~g~~~~ 165 (449)
T PRK07907 93 DVQPPGDPDAWDSPPFELTER--DGRLYGRGAADDKGGIAMHLAALRALG----GDLPVGVTVFVEGEEEMGS-PSLERL 165 (449)
T ss_pred CCCCCCCccccCCCCceeEEE--CCEEEECCccCCcHHHHHHHHHHHHhc----cCCCCcEEEEEEcCcccCC-ccHHHH
Confidence 9999976 6899999999999 999999999999999999999999883 2456899999999999998 899999
Q ss_pred Hhccc-ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEe--eCCCCcCCC-CCC-cHHHHHHHHHHHHHccccc-
Q 013641 180 VESNE-FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAK--GAPGHGSRM-FDN-GAMENLMKSVEMITKFRES- 253 (439)
Q Consensus 180 ~~~~~-~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~--G~~~Hs~~p-~~g-nai~~~~~~i~~l~~~~~~- 253 (439)
+++.. ..+.|++++.+.+... .+.+.++++++|..+++++++ |+++|+|.| ..+ |||..|++++.+|.+....
T Consensus 166 l~~~~~~~~~d~~iv~E~~~~~-~~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~~ 244 (449)
T PRK07907 166 LAEHPDLLAADVIVIADSGNWS-VGVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGNV 244 (449)
T ss_pred HHhchHhhcCCEEEEecCCcCC-CCCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCCE
Confidence 98642 1235767777643321 113468999999999999998 889999985 445 9999999999999764210
Q ss_pred ---------hh-----H--HHHh--cc-------------ccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeee
Q 013641 254 ---------QF-----D--VVKA--GR-------------AANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDAR 302 (439)
Q Consensus 254 ---------~~-----~--~~~~--~~-------------~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR 302 (439)
.+ + .... +. ......+|++++.|+++. +|.+.|+||++|++++|+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~---~g~~~nvIP~~a~~~~diR 321 (449)
T PRK07907 245 AVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPP---VAGASNALPPSARARLSLR 321 (449)
T ss_pred eCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCC---CCCCCCEecCceEEEEEEE
Confidence 00 0 0000 00 000124688999998753 2338899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhcccCC-CceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCcc
Q 013641 303 LPPTVDPDLIRRRIAEEWAPAIR-NMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTD 381 (439)
Q Consensus 303 ~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD 381 (439)
++|.++.+++.+.|++.+++... +.+++++.. ....|+. ++.++++++.+.+++++.++..+.....+++++
T Consensus 322 ~~p~~~~e~v~~~l~~~l~~~~~~~~~~~~~~~-----~~~~p~~--~~~~~~~~~~l~~a~~~~~g~~~~~~~~~g~~~ 394 (449)
T PRK07907 322 VAPGQDAAEAQDALVAHLEAHAPWGAHVTVERG-----DAGQPFA--ADASGPAYDAARAAMREAWGKDPVDMGMGGSIP 394 (449)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEC-----CCcCcee--CCCCCHHHHHHHHHHHHHhCCCceecCCCCcHH
Confidence 99999999999999988875322 445555431 1334444 456799999999999998776533333334433
Q ss_pred -HHHHH-Hh-CCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhh
Q 013641 382 -ARYMR-QL-GIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLS 432 (439)
Q Consensus 382 -~~~~~-~~-gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~ 432 (439)
.+.+. .. ++|++.|||+... .++|++||+++++++.+++++|++++..+.
T Consensus 395 ~~~~~~~~~~~~~~v~~Gpg~~~-~~aH~~nE~i~i~~l~~~~~~~~~~l~~~~ 447 (449)
T PRK07907 395 FIAELQEAFPQAEILVTGVEDPK-TRAHSPNESVHLGELERAAVAEALLLARLA 447 (449)
T ss_pred HHHHHHHhcCCCcEEEeccCCCC-CCCcCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 23343 33 5899999998631 269999999999999999999999999874
No 29
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1.7e-52 Score=412.40 Aligned_cols=356 Identities=21% Similarity=0.235 Sum_probs=275.1
Q ss_pred CchhHHHHHHhHhcCcCCCCC--CCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeeccccc
Q 013641 27 EEREPITRFKQYLRFNTAHPN--PNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVP 104 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp 104 (439)
..++++++|++|++|||.+++ .+|.++++||+++|+ |+.++.++...+++|+++.. | +|+|+|+||+||||
T Consensus 4 ~~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g----~~~lll~gH~DtVp 76 (364)
T PRK08737 4 LLESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G----TPKYLFNVHLDTVP 76 (364)
T ss_pred cHHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C----CCeEEEEeeeCCCC
Confidence 456789999999999999743 347899999999997 99888776544678999863 4 27899999999999
Q ss_pred CCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccc
Q 013641 105 AEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNE 184 (439)
Q Consensus 105 ~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 184 (439)
+++ .|+.+||.+.++ ||+|||||++|||+++|++|.|++. +.++|.|+|++|||.|+..|++.+++.+.
T Consensus 77 ~~~-~w~~~Pf~~~~~--~g~lyGrGa~DmKg~~aa~l~a~~~--------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~ 145 (364)
T PRK08737 77 DSP-HWSADPHVMRRT--DDRVIGLGVCDIKGAAAALLAAANA--------GDGDAAFLFSSDEEANDPRCVAAFLARGI 145 (364)
T ss_pred CCC-CCCCCCCceEEE--CCEEEEECcccchHHHHHHHHHHHc--------cCCCEEEEEEcccccCchhhHHHHHHhCC
Confidence 975 799999999998 9999999999999999999999763 23689999999999986469889988653
Q ss_pred ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCC-CCC-cHHHHHHHHHHHHHccccchhHHHHhcc
Q 013641 185 FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRM-FDN-GAMENLMKSVEMITKFRESQFDVVKAGR 262 (439)
Q Consensus 185 ~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p-~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~ 262 (439)
+.+++++. +|+. ..++++++|..+++|+++|+++|+|.| +.| |||..|++++.++.++.... ..+..
T Consensus 146 --~~~~~iv~-----Ept~-~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~---~~~~~ 214 (364)
T PRK08737 146 --PYEAVLVA-----EPTM-SEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESL---AHARF 214 (364)
T ss_pred --CCCEEEEc-----CCCC-ceeEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhh---hhhcc
Confidence 35655543 6874 678999999999999999999999998 477 99999999998875432111 10000
Q ss_pred ccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCC
Q 013641 263 AANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKG 342 (439)
Q Consensus 263 ~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (439)
.. ....+++++.++||. +.|+||++|++++|+|+.|.++.+++.++|++.++. ..+++++.... ..
T Consensus 215 ~~-~~~~t~~vg~i~GG~------~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~~--~~~~~~~~~~~-----~~ 280 (364)
T PRK08737 215 GG-LTGLRFNIGRVEGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAEP--AAATFEETFRG-----PS 280 (364)
T ss_pred CC-CCCCceEEeeEecCC------CCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHHH--cCCceEEEecc-----CC
Confidence 00 123589999999987 899999999999999999999999999999877753 22333333210 12
Q ss_pred CCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHH
Q 013641 343 RPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVE 422 (439)
Q Consensus 343 ~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~ 422 (439)
.|+.. .+ .+++++.+.+...+..+.. ......++||++++...|+|++.|||+... ++|++||++++++|.++++
T Consensus 281 ~~~~~-~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~tDa~~~~~~Gip~v~~GpG~~~--~aHt~dE~i~i~~l~~~~~ 355 (364)
T PRK08737 281 LPSGD-IA-RAEERRLAARDVADALDLP-IGNAVDFWTEASLFSAAGYTALVYGPGDIA--QAHTADEFVTLDQLQRYAE 355 (364)
T ss_pred CCCcc-cC-cchHHHHHHHHHHhhhcCC-CCceeccccCHHHHHHcCCCEEEECCCChh--hccCCCcceeHHHHHHHHH
Confidence 22221 22 2366665544444333332 222346789999999899999999998643 7999999999999999999
Q ss_pred HHHHHHHH
Q 013641 423 VYESVISS 430 (439)
Q Consensus 423 ~~~~~l~~ 430 (439)
+|.+++.+
T Consensus 356 ~~~~~~~~ 363 (364)
T PRK08737 356 SVHRIIND 363 (364)
T ss_pred HHHHHhcC
Confidence 99998753
No 30
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=2.8e-52 Score=409.83 Aligned_cols=337 Identities=21% Similarity=0.244 Sum_probs=279.2
Q ss_pred chhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC
Q 013641 28 EREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP 107 (439)
Q Consensus 28 ~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~ 107 (439)
.++++++|++|++|||++ ++|.++++||+++|+++|++++.++ .+|++. .| .++|+|+||+||||.
T Consensus 9 ~~~~~~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~~~----~~~~~~--~g----~~~lll~gH~DtVp~-- 74 (346)
T PRK00466 9 KQKAKELLLDLLSIYTPS--GNETNATKFFEKISNELNLKLEILP----DSNSFI--LG----EGDILLASHVDTVPG-- 74 (346)
T ss_pred HHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEEec----CCCcEe--cC----CCeEEEEeccccCCC--
Confidence 368899999999999986 7889999999999999999888764 345553 23 267999999999984
Q ss_pred CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccc
Q 013641 108 DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRE 187 (439)
Q Consensus 108 ~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 187 (439)
+|.+.++ ||+|||||++|||++++++|.|+++|+ +.+ .++.|+|++|||.|+ .|++++++++ . .
T Consensus 75 ------~~~~~~~--~g~iyGrG~~DmKgg~aa~l~a~~~l~-~~~----~~i~~~~~~dEE~g~-~G~~~l~~~~-~-~ 138 (346)
T PRK00466 75 ------YIEPKIE--GEVIYGRGAVDAKGPLISMIIAAWLLN-EKG----IKVMVSGLADEESTS-IGAKELVSKG-F-N 138 (346)
T ss_pred ------CCCceee--CCEEEecCccccchHHHHHHHHHHHHH-HcC----CCEEEEEEcCcccCC-ccHHHHHhcC-C-C
Confidence 2556677 999999999999999999999999998 765 368999999999987 8999999875 3 3
Q ss_pred cceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccchhHHHHhccccCCC
Q 013641 188 LNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRESQFDVVKAGRAANSE 267 (439)
Q Consensus 188 ~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 267 (439)
.|.+++. +|++...++++++|..+++|+++|+++|+|.|.. |||..|++++.+|.++.... .
T Consensus 139 ~d~~i~~-----ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~~-nAi~~~~~~l~~l~~~~~~~------------~ 200 (346)
T PRK00466 139 FKHIIVG-----EPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAKS-NLIVDISKKIIEVYKQPENY------------D 200 (346)
T ss_pred CCEEEEc-----CCCCCCceEEEeeEEEEEEEEEEeeccccCCCCc-CHHHHHHHHHHHHHhccccC------------C
Confidence 5655554 5775457999999999999999999999998754 99999999999987642210 1
Q ss_pred ceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccc
Q 013641 268 VISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMT 347 (439)
Q Consensus 268 ~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 347 (439)
..+++++.++||. ..|+||++|++++|+|++|.++.+++.++|++.+.+ ++++... ..|+.
T Consensus 201 ~~t~~~~~i~gG~------~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~----~~~~~~~--------~~~~~- 261 (346)
T PRK00466 201 KPSIVPTIIRAGE------SYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQE----CGLKIVD--------ETPPV- 261 (346)
T ss_pred CCcceeeEEecCC------cCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHhh----CcEeecc--------CCCCc-
Confidence 2578999999987 899999999999999999999999999999988863 3333322 23333
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHH
Q 013641 348 LTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESV 427 (439)
Q Consensus 348 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~ 427 (439)
.++.++++++.+.+++++.+. .+.+...+++||++++...++|++.|||+... .+|++|||++++++.+++++|.++
T Consensus 262 ~~~~~~~lv~~l~~a~~~~g~-~~~~~~~~g~tD~~~~~~~~~~~v~fGpg~~~--~aH~~nE~i~i~~l~~~~~~~~~~ 338 (346)
T PRK00466 262 KVSINNPVVKALMRALLKQNI-KPRLVRKAGTSDMNILQKITTSIATYGPGNSM--LEHTNQEKITLDEIYIAVKTYMLA 338 (346)
T ss_pred ccCCCCHHHHHHHHHHHHhCC-CceEEecCCcCcHHHHHHhCCCEEEECCCCcc--cccCCCceeeHHHHHHHHHHHHHH
Confidence 245679999999999998644 33555567899999999888899999998643 799999999999999999999999
Q ss_pred HHHhhcc
Q 013641 428 ISSLSSF 434 (439)
Q Consensus 428 l~~~~~~ 434 (439)
+..++..
T Consensus 339 i~~l~~~ 345 (346)
T PRK00466 339 IEELWQK 345 (346)
T ss_pred HHHHHhc
Confidence 9988753
No 31
>PRK07079 hypothetical protein; Provisional
Probab=100.00 E-value=1e-51 Score=421.28 Aligned_cols=386 Identities=17% Similarity=0.227 Sum_probs=293.2
Q ss_pred chhHHHHHHhHhcCcCCCCC-CCCchHHHHHH----HHHHhcCCceEEEEec--CCccEEEEEEcCCCCCCCcEEEeeec
Q 013641 28 EREPITRFKQYLRFNTAHPN-PNYTAPVSFLI----SQAQSIGLQFKTLEFV--PNKPILLLTWPGSDPSLPSILFNSHL 100 (439)
Q Consensus 28 ~~~~i~~l~~lv~ips~s~~-~~e~~~~~~l~----~~l~~~G~~~~~~~~~--~~~~nvi~~~~g~~~~~~~vll~aH~ 100 (439)
.++++++|++||+|||+|+. .++.++++||+ ++|+++|++++.++.. ++++||++++.|.. ++|+|+|+||+
T Consensus 16 ~~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~-~~~~lll~gH~ 94 (469)
T PRK07079 16 SGAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIEDD-ALPTVLIYGHG 94 (469)
T ss_pred cHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCCC-CCCEEEEEccc
Confidence 35899999999999999853 24557777765 5899999999876543 35789999986533 35899999999
Q ss_pred ccccCCCCCCC--CCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhc-CCCCCeeEEEEEecCcccCcccCHH
Q 013641 101 DSVPAEPDKWS--HPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVK-NFKPIRTVHASYVPDEEIGGFDGMA 177 (439)
Q Consensus 101 Dtvp~~~~~w~--~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~-~~~~~~~i~~~~~~~EE~g~~~G~~ 177 (439)
||||++++.|+ ++||.++++ ||+|||||++||||+++++|.|+++|. +. +.++.++|.|++++|||.|+ .|++
T Consensus 95 DvVp~~~~~W~~~~~Pf~~~~~--dg~lyGRGa~DmKgg~aa~l~A~~~l~-~~~~~~~~~~i~~~~~~dEE~g~-~G~~ 170 (469)
T PRK07079 95 DVVRGYDEQWREGLSPWTLTEE--GDRWYGRGTADNKGQHTINLAALEQVL-AARGGRLGFNVKLLIEMGEEIGS-PGLA 170 (469)
T ss_pred CCCCCChHHhcccCCCCccccc--CCEEEEEeccCCcHHHHHHHHHHHHHH-HhcCCCCCCCEEEEEECccccCC-ccHH
Confidence 99998767899 499999998 999999999999999999999999987 53 46788999999999999998 8999
Q ss_pred HHHhccc--ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeC--CCCcCCCCCC---cHHHHHHHHHHHHHcc
Q 013641 178 KFVESNE--FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGA--PGHGSRMFDN---GAMENLMKSVEMITKF 250 (439)
Q Consensus 178 ~~~~~~~--~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~--~~Hs~~p~~g---nai~~~~~~i~~l~~~ 250 (439)
.++++.. +. .|++++.+.+...++ .+.++++++|..+++|+++|+ +.||+. +.| ||+..++.+|..+.+.
T Consensus 171 ~l~~~~~~~~~-~d~~iv~e~~~~~~~-~~~i~~g~kG~~~~~v~v~G~~~~~hs~~-~~g~~~nai~~l~~ai~~l~~~ 247 (469)
T PRK07079 171 EVCRQHREALA-ADVLIASDGPRLSAE-RPTLFLGSRGAVNFRLRVNLRDGAHHSGN-WGGLLRNPGTVLAHAIASLVDA 247 (469)
T ss_pred HHHHHhHHhcC-CCEEEEeCCCccCCC-CeEEEEecceEEEEEEEEeeCCCCCCCCc-cccccCCHHHHHHHHHHHhCCC
Confidence 9998642 33 576666543322233 367999999999999999998 446664 433 9999999999998653
Q ss_pred ccch-------------h-HHHHh---cc-------------c------cCCCceEeeEeEEeecccCCCCcccccccCc
Q 013641 251 RESQ-------------F-DVVKA---GR-------------A------ANSEVISVNLVYLKAGIPSPTGFVMNMQPSE 294 (439)
Q Consensus 251 ~~~~-------------~-~~~~~---~~-------------~------~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~ 294 (439)
.... . ..+.. .. . ..-..+|++++.|+||.. ....|+||++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~---~~~~NvVP~~ 324 (469)
T PRK07079 248 RGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNP---DAPVNAIPGS 324 (469)
T ss_pred CCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCC---CCcceEecCc
Confidence 1100 0 00000 00 0 000135899999999852 1158999999
Q ss_pred eEEEEeeecCCCCCHHHHHHHHHHHhcccC-CCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCcc
Q 013641 295 AEAGFDARLPPTVDPDLIRRRIAEEWAPAI-RNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKP 373 (439)
Q Consensus 295 ~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 373 (439)
|++++|+|++|.++.+++.++|++++++.. ..+++++.. ...|.. ++.++++++.+.+++++.++..+..
T Consensus 325 a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~~~~-------~~~p~~--~~~~~~~v~~l~~a~~~~~g~~~~~ 395 (469)
T PRK07079 325 ARAVCQLRFVVGTDWENLAPHLRAHLDAHGFPMVEVTVER-------GSPATR--LDPDDPWVRWALASIARTTGKKPAL 395 (469)
T ss_pred eEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC-------CCCcee--cCCCCHHHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999987532 234444332 233333 5678999999999999987664232
Q ss_pred cc-ccCCccHHHHHH-hCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhcc
Q 013641 374 EI-LASTTDARYMRQ-LGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSSF 434 (439)
Q Consensus 374 ~~-~~~~tD~~~~~~-~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~ 434 (439)
.. ..+++|+++|.. .|+|++.||++.. ...+|++||+++++++.+++++|.+++..+++.
T Consensus 396 ~~~~~g~~d~~~~~~~~giP~v~~g~~~~-~~~~H~~dE~v~l~~l~~~~~~~~~~~~~~~~~ 457 (469)
T PRK07079 396 LPNLGGSLPNDVFADILGLPTLWVPHSYP-ACSQHAPNEHLLASVAREGLQIMAGLFWDLGEQ 457 (469)
T ss_pred ecCCCcchhHHHHHHHhCCCEEEecCCCC-CccCcCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 22 345568887764 7999998765432 235899999999999999999999999999764
No 32
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=4.6e-52 Score=408.92 Aligned_cols=344 Identities=19% Similarity=0.225 Sum_probs=283.4
Q ss_pred hhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCCC
Q 013641 29 REPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEPD 108 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~~ 108 (439)
+++++++++|++|||+| ++|.++++||.++|+++|++++.+... +.+|+++ + ++|+|+|+|||||||...
T Consensus 2 ~~~~~~~~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~~~~-~~~~~~~---~---~~~~i~l~~H~D~vp~~~- 71 (347)
T PRK08652 2 ERAKELLKQLVKIPSPS--GQEDEIALHIMEFLESLGYDVHIESDG-EVINIVV---N---SKAELFVEVHYDTVPVRA- 71 (347)
T ss_pred hhHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCEEEEEecC-ceeEEEc---C---CCCEEEEEccccccCCCC-
Confidence 67899999999999997 788999999999999999998876532 3567776 3 248999999999999853
Q ss_pred CCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccccccc
Q 013641 109 KWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFREL 188 (439)
Q Consensus 109 ~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 188 (439)
+| .++ ||++||||++|||++++++|.|++.|. +.. .+++|.|+|++|||.|+ .|++.++++. + .
T Consensus 72 ----~~---~~~--~g~iyGrG~~D~Kg~~a~~l~a~~~l~-~~~--~~~~v~~~~~~dEE~g~-~G~~~~~~~~--~-~ 135 (347)
T PRK08652 72 ----EF---FVD--GVYVYGTGACDAKGGVAAILLALEELG-KEF--EDLNVGIAFVSDEEEGG-RGSALFAERY--R-P 135 (347)
T ss_pred ----CC---EEE--CCEEEeccchhhhHHHHHHHHHHHHHh-hcc--cCCCEEEEEecCcccCC-hhHHHHHHhc--C-C
Confidence 23 356 999999999999999999999999998 653 45799999999999987 7999999753 2 3
Q ss_pred ceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccccCCC
Q 013641 189 NVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSE 267 (439)
Q Consensus 189 ~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 267 (439)
|++++. +|+. ..++++++|..+++|+++|+++|++.|+.+ |||..|++++..|+++.... ... .
T Consensus 136 d~~i~~-----ep~~-~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~----~~~---~-- 200 (347)
T PRK08652 136 KMAIVL-----EPTD-LKVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKAL----GKY---F-- 200 (347)
T ss_pred CEEEEe-----cCCC-CceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhh----hcc---c--
Confidence 667766 4653 578999999999999999999999999988 99999999999998753211 000 1
Q ss_pred ceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccc
Q 013641 268 VISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMT 347 (439)
Q Consensus 268 ~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 347 (439)
.++++++.++||. ..|+||++|++++|+|++|.++.+++.++|++.+++ ..+++++.. ...|+
T Consensus 201 ~~~~~~~~i~gg~------~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~--~~v~~~~~~-------~~~~~-- 263 (347)
T PRK08652 201 DPHIGIQEIIGGS------PEYSIPALCRLRLDARIPPEVEVEDVLDEIDPILDE--YTVKYEYTE-------IWDGF-- 263 (347)
T ss_pred CCCCcceeeecCC------CCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHh--cCceEEEec-------cCCcc--
Confidence 1346677788876 889999999999999999999999999999988863 345555442 22332
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHH
Q 013641 348 LTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESV 427 (439)
Q Consensus 348 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~ 427 (439)
.++.|+++++.+.+++++. +..+.+....++||++++.+.|+|++.|||+... .+|++|||++++++.+++++|.++
T Consensus 264 ~~~~~~~lv~~l~~a~~~~-g~~~~~~~~~g~tDa~~~~~~gip~v~~Gpg~~~--~~H~~nE~i~i~~l~~~~~~l~~~ 340 (347)
T PRK08652 264 ELDEDEEIVQLLEKAMKEV-GLEPEFTVMRSWTDAINFRYNGTKTVVWGPGELD--LCHTKFERIDVREVEKAKEFLKAL 340 (347)
T ss_pred cCCCCCHHHHHHHHHHHHh-CCCCCcCcCCccchhHHHHHCCCCEEEECCCchh--hcCCCCceeeHHHHHHHHHHHHHH
Confidence 2466899999999999998 4444556677899999998899999999998643 799999999999999999999999
Q ss_pred HHHhhc
Q 013641 428 ISSLSS 433 (439)
Q Consensus 428 l~~~~~ 433 (439)
+..+..
T Consensus 341 ~~~~~~ 346 (347)
T PRK08652 341 NEILLE 346 (347)
T ss_pred HHHHhc
Confidence 988753
No 33
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=4e-51 Score=401.80 Aligned_cols=342 Identities=19% Similarity=0.209 Sum_probs=276.1
Q ss_pred chhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC
Q 013641 28 EREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP 107 (439)
Q Consensus 28 ~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~ 107 (439)
.++++++|++|++|||++ ++|.++++|+.++|+++|++++.+ ..+|+++++ |.. +|+|+|+||+||||..
T Consensus 5 ~~~~~~~l~~Lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~----~~~n~i~~~-~~~--~~~l~~~~H~DtVp~~- 74 (348)
T PRK04443 5 ALEARELLKGLVEIPSPS--GEEAAAAEFLVEFMESHGREAWVD----EAGNARGPA-GDG--PPLVLLLGHIDTVPGD- 74 (348)
T ss_pred hHHHHHHHHHHHcCCCCC--CChHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEc-CCC--CCEEEEEeeccccCCC-
Confidence 478999999999999997 689999999999999999988765 356899998 432 4899999999999963
Q ss_pred CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccc
Q 013641 108 DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRE 187 (439)
Q Consensus 108 ~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 187 (439)
.|| .++ ||+|||||++|||++++++|.|+++|. .+++++|.|++++|||.|+ .|...++.+. + .
T Consensus 75 -----~p~--~~~--~g~iyGrG~~D~Kg~~aa~l~A~~~l~----~~~~~~i~~~~~~dEE~g~-~~~~~~l~~~-~-~ 138 (348)
T PRK04443 75 -----IPV--RVE--DGVLWGRGSVDAKGPLAAFAAAAARLE----ALVRARVSFVGAVEEEAPS-SGGARLVADR-E-R 138 (348)
T ss_pred -----CCc--Eee--CCeEEeecccccccHHHHHHHHHHHhc----ccCCCCEEEEEEcccccCC-hhHHHHHHhc-c-C
Confidence 366 366 999999999999999999999999983 2578899999999999997 5666666554 3 3
Q ss_pred cceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccccCC
Q 013641 188 LNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANS 266 (439)
Q Consensus 188 ~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 266 (439)
.|++++. +|++...++++++|..+++++++|+++|||.| + |||..|+++++.|.++... .... ....
T Consensus 139 ~d~~iv~-----Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~----~~~~-~~~~ 206 (348)
T PRK04443 139 PDAVIIG-----EPSGWDGITLGYKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEA----NDGR-ERVF 206 (348)
T ss_pred CCEEEEe-----CCCCccceeeecccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhc----Cccc-cccc
Confidence 5766665 56653468999999999999999999999987 6 9999999999999875320 0000 0011
Q ss_pred CceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCcc
Q 013641 267 EVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLM 346 (439)
Q Consensus 267 ~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 346 (439)
..++++++.++ . ..|+||++|++++|+|++|.++.+++.++|++.+. .+++++.. ...|+.
T Consensus 207 ~~~~~~i~~i~--~------~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~----~~~~~~~~-------~~~~~~ 267 (348)
T PRK04443 207 DQVTPKLVDFD--S------SSDGLTVEAEMTVGLRLPPGLSPEEAREILDALLP----TGTVTFTG-------AVPAYM 267 (348)
T ss_pred cccceeeeEEe--c------CCCCCCceEEEEEEEccCCCCCHHHHHHHHHHhCC----CcEEEEec-------CCCcee
Confidence 23577888877 2 56899999999999999999999999999988874 23444432 233433
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHH-hCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHH
Q 013641 347 TLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQ-LGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYE 425 (439)
Q Consensus 347 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~-~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~ 425 (439)
++.++++++.+.+++++.++.. ......+++|++++.+ .|+|++.|||+... ++|++||+++++++.+++++|+
T Consensus 268 --~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~tD~~~~~~~~gip~v~~Gpg~~~--~~H~~dE~i~i~~l~~~~~~~~ 342 (348)
T PRK04443 268 --VSKRTPLARAFRVAIREAGGTP-RLKRKTGTSDMNVVAPAWGCPMVAYGPGDSD--LDHTPDEHLPLAEYLRAIAVLT 342 (348)
T ss_pred --cCCCCHHHHHHHHHHHHhcCCc-ceeccccCCcHHHHhhhcCCCEEEECCCCcc--ccCCCcccccHHHHHHHHHHHH
Confidence 4668999999999999987653 4445678999999976 59999999998643 6899999999999999999999
Q ss_pred HHHHHh
Q 013641 426 SVISSL 431 (439)
Q Consensus 426 ~~l~~~ 431 (439)
+++..+
T Consensus 343 ~~~~~l 348 (348)
T PRK04443 343 DVLERL 348 (348)
T ss_pred HHHhhC
Confidence 998754
No 34
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-50 Score=405.79 Aligned_cols=382 Identities=24% Similarity=0.342 Sum_probs=300.7
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCC--ccEEEEEEcCCCCCCCcEEEeeecccc
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPN--KPILLLTWPGSDPSLPSILFNSHLDSV 103 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~--~~nvi~~~~g~~~~~~~vll~aH~Dtv 103 (439)
...++++++|++|++|||+| ...+.++++|++++|+++|+.++.+..... .+|+++++.+..+ .|+|+|+||+|||
T Consensus 10 ~~~~~~~~~l~~lv~~~s~s-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~l~l~~H~DvV 87 (409)
T COG0624 10 DLLDDILELLKELVRIPSVS-AGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDG-GPTLLLGGHLDVV 87 (409)
T ss_pred HhhHHHHHHHHHHhcCCCCC-cccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCC-CCeEEEecccccc
Confidence 45677889999999999997 578999999999999999999988766432 5699999976543 3899999999999
Q ss_pred cCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhc
Q 013641 104 PAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVES 182 (439)
Q Consensus 104 p~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 182 (439)
|+++ ..|+.+||+++++ ||+|||||++||||++++++.|++.+. +.+..++++|.+++++|||+|+ .|+..++.+
T Consensus 88 P~g~~~~W~~~Pf~~~~~--dg~lyGRG~~D~KG~~~a~l~A~~~l~-~~~~~~~~~v~~~~~~dEE~g~-~~~~~~~~~ 163 (409)
T COG0624 88 PAGGGEDWTTDPFEPTIK--DGKLYGRGAADMKGGLAAALYALSALK-AAGGELPGDVRLLFTADEESGG-AGGKAYLEE 163 (409)
T ss_pred CCCCcccCccCCCccEEE--CCEEEecCccccchHHHHHHHHHHHHH-HhCCCCCeEEEEEEEeccccCC-cchHHHHHh
Confidence 9997 7899999999999 899999999999999999999999999 8777889999999999999998 888888876
Q ss_pred ccc---cccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCC--CCCC-c----HHHHHHHHHHHHHcccc
Q 013641 183 NEF---RELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSR--MFDN-G----AMENLMKSVEMITKFRE 252 (439)
Q Consensus 183 ~~~---~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~--p~~g-n----ai~~~~~~i~~l~~~~~ 252 (439)
... ...|+.++.+... .......++++.+|..+++|+++|+++|+|. |..+ | ++..+.+++..+.++..
T Consensus 164 ~~~~~~~~~d~~i~~E~~~-~~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~ 242 (409)
T COG0624 164 GEEALGIRPDYEIVGEPTL-ESEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAG 242 (409)
T ss_pred cchhhccCCCEEEeCCCCC-cccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhccccc
Confidence 531 2357666664311 1123467777999999999999999999998 7777 9 45555555555544322
Q ss_pred chhHHHHhccccCCCceEeeEeEEeeccc--CCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccC--CCce
Q 013641 253 SQFDVVKAGRAANSEVISVNLVYLKAGIP--SPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAI--RNMS 328 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~~~t~~~~~i~gg~~--~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~--~~~~ 328 (439)
..+.. ..+++++.+.++.. ..+|...|+||++|++++|+|+.|.++.+++.++|++.++... ..++
T Consensus 243 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~ 312 (409)
T COG0624 243 EGFDG----------PLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVE 312 (409)
T ss_pred ccccC----------CccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCce
Confidence 21110 24556665655542 1233367999999999999999999999999999988887532 3555
Q ss_pred EEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCC
Q 013641 329 YEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDH 408 (439)
Q Consensus 329 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~ 408 (439)
+++... ....|. .++.++++++.+.+++++..+..+.....++++|+.|++..++|++.|||+... .+|++
T Consensus 313 ~~~~~~-----~~~~~~--~~~~~~~~v~~l~~~~~~~~g~~~~~~~~G~~~da~~~~~~~~~~~~fgp~~~~--~~H~~ 383 (409)
T COG0624 313 YEIEPG-----LGEPPL--PVPGDSPLVAALAEAAEELLGLPPEVSTGGGTHDARFFARLGIPAVIFGPGDIG--LAHQP 383 (409)
T ss_pred EEeccc-----cCCccc--cCCCchHHHHHHHHHHHHhhCCCceecCCCCcchHHHHHhcCCeeEEECCCCcc--cccCC
Confidence 555531 012232 256678999999999999766542333334568999999999999999999843 79999
Q ss_pred CCccchHhHHHHHHHHHHHHHHhhc
Q 013641 409 NEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 409 nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
|||++++++.+++++|+++++.++.
T Consensus 384 ~E~v~i~~l~~~~~~~~~~l~~l~~ 408 (409)
T COG0624 384 NEYVELEDLVKGAKVLARLLYELAE 408 (409)
T ss_pred CceeeHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999875
No 35
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=4.1e-50 Score=407.76 Aligned_cols=369 Identities=18% Similarity=0.254 Sum_probs=280.0
Q ss_pred CCchhHHHHHHhHhcCcCCCCC----------CCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEE
Q 013641 26 HEEREPITRFKQYLRFNTAHPN----------PNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSIL 95 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~----------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vl 95 (439)
.++++++++|++||+|||++.. .++.++++|+.++|+++||+++.++ |+++.+.+.. +.++|+
T Consensus 10 ~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~------~~~~~~~~~~-~~~~l~ 82 (466)
T TIGR01886 10 ARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD------NYAGHVEYGA-GDERLG 82 (466)
T ss_pred HhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec------CCceeEEecC-CCCEEE
Confidence 4678999999999999999732 2456789999999999999988653 2223222212 348999
Q ss_pred EeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccC
Q 013641 96 FNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDG 175 (439)
Q Consensus 96 l~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G 175 (439)
|++|+||||++ +.|+++||.++++ ||+|||||++||||+++++|.|+++|+ +.+.+++++|.|+|.++||+|+ .|
T Consensus 83 ~~gH~DvVp~~-~~W~~~Pf~~~~~--dg~lyGRG~~D~Kg~~~a~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~-~g 157 (466)
T TIGR01886 83 IIGHMDVVPAG-EGWTRDPFEPEID--EGRIYARGASDDKGPSLAAYYAMKILK-ELGLPPSKKIRFVVGTNEETGW-VD 157 (466)
T ss_pred EEeecccCCCC-CCCcCCCCCeEEE--CCEEEecCccccchHHHHHHHHHHHHH-HhCCCCCCCEEEEEECccccCc-cc
Confidence 99999999998 4799999999999 999999999999999999999999999 8888899999999999999997 89
Q ss_pred HHHHHhcccccccceEEEEecCC----cCCCCcce---------------------------------EE----------
Q 013641 176 MAKFVESNEFRELNVGFVMDEGQ----ASTNDDFR---------------------------------VF---------- 208 (439)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~g~----~~p~~~~~---------------------------------i~---------- 208 (439)
+++++++... .|++++.|.+. .+++. .. .+
T Consensus 158 ~~~~~~~~~~--~d~~~~~d~~~~~~~ge~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~ 234 (466)
T TIGR01886 158 MDYYFKHEET--PDFGFSPDAEFPIINGEKGN-FTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKA 234 (466)
T ss_pred HHHHHhcCcC--CCEEEECCCCceeEEEecce-EEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHH
Confidence 9999986542 35443322110 01111 00 11
Q ss_pred -----eeccceE---------EEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHcccc--chhHHHHh---------c-
Q 013641 209 -----YADRSPW---------HLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRE--SQFDVVKA---------G- 261 (439)
Q Consensus 209 -----~~~~G~~---------~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~--~~~~~~~~---------~- 261 (439)
.+++|.. +++|+++|+++|++.|+.| |||..|++++..+..-.. ..++.+.. .
T Consensus 235 ~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (466)
T TIGR01886 235 AYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKL 314 (466)
T ss_pred HHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccC
Confidence 1244433 6889999999999999999 999999999887311000 00010100 0
Q ss_pred ----cccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeecccc
Q 013641 262 ----RAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPI 337 (439)
Q Consensus 262 ----~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (439)
.......+|+|++.|++|. . | ++|++.+|+|++|.++.+++.++|++.+.. .+++++..
T Consensus 315 ~~~~~~~~~g~~S~nvgvI~gG~------~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~---~~~v~~~~---- 377 (466)
T TIGR01886 315 GIAFHDELMGDLAMNAGMFDFDH------A-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGG---IVDVTYNG---- 377 (466)
T ss_pred CCcccccCcCceEEEeEEEEEec------C-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhc---ccEEEEec----
Confidence 0011134789999999985 3 3 799999999999999999999999988863 23444321
Q ss_pred ccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhH
Q 013641 338 RDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVF 417 (439)
Q Consensus 338 ~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l 417 (439)
....|.+ ++.++++++.+.+++++..+..+.+...+++||+++|.. ++|...|||+... ++|++|||++++++
T Consensus 378 --~~~~P~~--~~~ds~lv~~l~~a~~~v~G~~~~~~~~~ggTDa~~~~~-~i~~gv~gPG~~~--~aH~~dE~V~i~el 450 (466)
T TIGR01886 378 --HFEEPHY--VPGSDPLVQTLLKVYEKHTGKKGHEVIIGGGTYGRLLER-GVAYGAMFEGGPD--VMHQANEFMMLDDL 450 (466)
T ss_pred --ccCCCcc--cCCCCHHHHHHHHHHHHHhCCCCceeeecCccHHHhccc-ccccccccCCCCC--CccCCCcceEHHHH
Confidence 1234544 455789999999999998776545556789999999984 7888889998643 79999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 013641 418 LKGVEVYESVISSLSS 433 (439)
Q Consensus 418 ~~~~~~~~~~l~~~~~ 433 (439)
.+++++|.+++..+++
T Consensus 451 ~~a~~iy~~~i~~l~~ 466 (466)
T TIGR01886 451 ILAAAIYAEAIYELAK 466 (466)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998863
No 36
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.3e-49 Score=392.22 Aligned_cols=342 Identities=13% Similarity=0.180 Sum_probs=274.7
Q ss_pred chhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhc-CCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCC
Q 013641 28 EREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSI-GLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAE 106 (439)
Q Consensus 28 ~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~-G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~ 106 (439)
.+++++++++|++|||+| ++|.++++||.++|+++ |+++... ..|+++++.+ +. +++|+|+|||||||+.
T Consensus 6 ~~~~~~~l~~li~ips~s--~~e~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~-~~-~~~i~l~~H~Dtvp~~ 76 (352)
T PRK13007 6 AADLAELTAALVDIPSVS--GDEKALADAVEAALRALPHLEVIRH-----GNSVVARTDL-GR-PSRVVLAGHLDTVPVA 76 (352)
T ss_pred HHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHHHhCcCceEEec-----CCeEEEEccC-CC-CCeEEEEccccccCCC
Confidence 468999999999999997 68899999999999996 8876542 4689999843 32 3689999999999987
Q ss_pred CCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcc-cCHHHHHhcc-c
Q 013641 107 PDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGF-DGMAKFVESN-E 184 (439)
Q Consensus 107 ~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~-~ 184 (439)
+ ||.+.++ ||+|||||++|||+++|++|.|++.|. +++++|.|+|+++||.|+. .|++.+++.. .
T Consensus 77 ~------~~~~~~~--~g~i~GrG~~D~Kg~~a~~l~a~~~l~-----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~ 143 (352)
T PRK13007 77 D------NLPSRRE--GDRLYGCGASDMKSGLAVMLHLAATLA-----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPE 143 (352)
T ss_pred C------CCCccee--CCEEEccCcccccHHHHHHHHHHHHhh-----ccCCCeEEEEEecccccCCcccHHHHHHhccc
Confidence 4 4556677 999999999999999999999999996 3678999999999998642 4888888653 2
Q ss_pred ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccc
Q 013641 185 FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRA 263 (439)
Q Consensus 185 ~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 263 (439)
+...|++++. +|++ ..++++.+|..+++|+++|+++|+|.|+.+ ||+..++++++.|+++...... . .
T Consensus 144 ~~~~d~~i~~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-~----~ 212 (352)
T PRK13007 144 WLAGDFAILL-----EPTD-GVIEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVV-V----D 212 (352)
T ss_pred ccCCCEEEEe-----cCCC-CceEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccc-c----C
Confidence 2346766666 4653 578999999999999999999999999888 9999999999999875421100 0 0
Q ss_pred cCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCC
Q 013641 264 ANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGR 343 (439)
Q Consensus 264 ~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (439)
......+++++.++||. ..|+||++|++++|+|++|.++.+++.++|++.+.... ++++.. ...
T Consensus 213 ~~~~~~~~~~~~i~gG~------~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~---~~~~~~-------~~~ 276 (352)
T PRK13007 213 GLTYREGLNAVRISGGV------AGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFDGFA---EVEVTD-------LAP 276 (352)
T ss_pred CCCccceeEeEeEecCC------cCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhcccc---EEEeec-------ccC
Confidence 01112578999999886 89999999999999999999999999999998886322 444432 223
Q ss_pred CccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHH
Q 013641 344 PLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEV 423 (439)
Q Consensus 344 p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~ 423 (439)
|+. ...++++++.+.+++. .. +....++||++++...|+|++.|||+... ++|++||+++++++.+++++
T Consensus 277 ~~~--~~~~~~~~~~~~~~~g----~~--~~~~~g~td~~~~~~~Gip~v~~Gpg~~~--~~H~~~E~v~i~~l~~~~~~ 346 (352)
T PRK13007 277 GAR--PGLDHPAAAALVAAVG----GE--VRAKYGWTDVARFSALGIPAVNFGPGDPA--LAHQRDEHVPVAQITACARI 346 (352)
T ss_pred CCC--CCCCCHHHHHHHHHhC----CC--CccccccchHHHHHhCCCCEEEeCCCchh--hccCCCCceEHHHHHHHHHH
Confidence 332 3567899999988742 21 23356889999999899999999998643 79999999999999999999
Q ss_pred HHHHH
Q 013641 424 YESVI 428 (439)
Q Consensus 424 ~~~~l 428 (439)
|+.++
T Consensus 347 ~~~~~ 351 (352)
T PRK13007 347 LRRWL 351 (352)
T ss_pred HHHHh
Confidence 99886
No 37
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=1.3e-49 Score=394.07 Aligned_cols=342 Identities=15% Similarity=0.178 Sum_probs=263.9
Q ss_pred HHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCc-eEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC---CC
Q 013641 34 RFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQ-FKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP---DK 109 (439)
Q Consensus 34 ~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~---~~ 109 (439)
+|++|++|||+| ++|.++++||.++|+++|+. ++.... .+||++++.+ + .+++|+|+|||||||+++ ..
T Consensus 1 ll~~Lv~ipS~s--~~e~~~~~~i~~~l~~~g~~~~~~~~~---~~nvva~~~~-~-~~~~l~l~gH~DtVp~~~~~~~~ 73 (373)
T TIGR01900 1 LLQQIMDIFSPS--DHEGPIADEIEAALNNLELEGLEVFRF---GDNVLARTDF-G-KASRVILAGHIDTVPIADNFPPK 73 (373)
T ss_pred ChHHHhCCCCCC--chHHHHHHHHHHHHhhccccCceEEEE---CCEEEEecCC-C-CCCeEEEeCccccccCCCCChhh
Confidence 478999999997 78999999999999999754 322221 3499999843 3 247899999999999974 46
Q ss_pred CCCCCC--------ceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHh--cCCCCCeeEEEEEecCcccCc-ccCHHH
Q 013641 110 WSHPPF--------SAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILV--KNFKPIRTVHASYVPDEEIGG-FDGMAK 178 (439)
Q Consensus 110 w~~~Pf--------~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~--~~~~~~~~i~~~~~~~EE~g~-~~G~~~ 178 (439)
|+.+|| .+.++ ||+|||||++|||++++++|.|+++|+ + .+..++++|.|+|+++||.|+ ..|++.
T Consensus 74 W~~~p~~~~~~~~~~~~~~--~g~lyGRGa~DmKgg~aa~l~a~~~l~-~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~ 150 (373)
T TIGR01900 74 WLEPGDSLIREEIAHAHPE--DGILWGCGATDMKAGDAVMLHLAATLD-GRAPETELKHDLTLIAYDCEEVAAEKNGLGH 150 (373)
T ss_pred hccCccccccccccccccc--CCEEEecCchhhhHHHHHHHHHHHHHh-hhccccCCCCCEEEEEEecccccCCCCCHHH
Confidence 988765 46677 999999999999999999999999995 4 344678999999999999863 259999
Q ss_pred HHhccc-ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhH
Q 013641 179 FVESNE-FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFD 256 (439)
Q Consensus 179 ~~~~~~-~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~ 256 (439)
++++.. +...|++++. +|++ ..++++++|..+++|+++|+++|++.|+.| |||..|+.++..|+++......
T Consensus 151 ~~~~~~~~~~~d~~iv~-----Ept~-~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~ 224 (373)
T TIGR01900 151 IRDAHPDWLAADFAIIG-----EPTG-GGIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVN 224 (373)
T ss_pred HHHhCcccccCCEEEEE-----CCCC-CcccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 987642 2235655554 5774 679999999999999999999999999988 9999999999999875421100
Q ss_pred HHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcc-----------c-C
Q 013641 257 VVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAP-----------A-I 324 (439)
Q Consensus 257 ~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~-----------~-~ 324 (439)
........+++++.|+||. ..|+||++|++++++|+.|.++.+++.++|+++++. . .
T Consensus 225 -----~~~~~~~~t~~v~~I~GG~------~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~~~~~~~~~~~~~~~~~~~ 293 (373)
T TIGR01900 225 -----IDGLDYREGLNATFCEGGK------ANNVIPDEARMHLNFRFAPDKDLAEAKALMMGADAGAELGNGEHVAEGGE 293 (373)
T ss_pred -----ccCCcccceEEEEEEeCCC------CCcccCCeEEEEEEEecCCCcCHHHHHHHHHhhhhhhhhhHHHHHHhhcc
Confidence 0011123689999999987 899999999999999999999999999999644221 0 0
Q ss_pred -CC-ceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCC
Q 013641 325 -RN-MSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTP 402 (439)
Q Consensus 325 -~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~ 402 (439)
.. ..++++.. ...++. .+..++++++.+.+++++.++..+ ....++||++++...|+|++.|||+...
T Consensus 294 ~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~g~tD~~~~~~~gip~v~~Gpg~~~- 363 (373)
T TIGR01900 294 FDGQDGIEIAME------DEAGGA-LPGLGAPLAQDLIDAVGEEKGRDP--LAKFGWTDVARFSALGIPALNFGAGDPL- 363 (373)
T ss_pred ccccccceEEEc------ccCCCC-CCCCCCHHHHHHHHHHHhccCCCc--ccccCCccHHHHHhcCCCEEEeCCCChh-
Confidence 00 12233221 112222 134578999999999999876642 3367889999998889999999998743
Q ss_pred CCCCCCCCccc
Q 013641 403 ILLHDHNEFLK 413 (439)
Q Consensus 403 ~~~H~~nE~i~ 413 (439)
++|++|||++
T Consensus 364 -~aH~~dE~v~ 373 (373)
T TIGR01900 364 -FAHKHDEQCP 373 (373)
T ss_pred -hccCCCCCCC
Confidence 7999999985
No 38
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=100.00 E-value=4.5e-49 Score=385.61 Aligned_cols=333 Identities=23% Similarity=0.301 Sum_probs=269.0
Q ss_pred HHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCCCCCCC
Q 013641 33 TRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEPDKWSH 112 (439)
Q Consensus 33 ~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~~~w~~ 112 (439)
++|++|++|||+| ++|.++++||+++|+++|+++... ..+|+++.. +. ++|+|+|+|||||||.
T Consensus 1 ~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~~----~~~~~~~~~-~~--~~~~i~~~~H~D~vp~------- 64 (336)
T TIGR01902 1 ELLKDLLEIYSPS--GKEANAAKFLEEISKDLGLKLIID----DAGNFILGK-GD--GHKKILLAGHVDTVPG------- 64 (336)
T ss_pred ChHHHHhcCCCCC--cchHHHHHHHHHHHHHcCCEEEEC----CCCcEEEEe-CC--CCceEEEEccccccCC-------
Confidence 3689999999997 688999999999999999988422 456888876 33 3589999999999985
Q ss_pred CCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccceEE
Q 013641 113 PPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGF 192 (439)
Q Consensus 113 ~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~ 192 (439)
+|...++ ||++||||++|||++++++|.|++.|+ +. .++|.|++++|||.|+ .|++.++++.. .++++
T Consensus 65 -~~~~~~~--~g~i~GrG~~D~Kg~~aa~l~a~~~l~-~~----~~~i~~~~~~dEE~g~-~G~~~~~~~~~---~~~~i 132 (336)
T TIGR01902 65 -YIPVKIE--GGLLYGRGAVDAKGPLIAMIFATWLLN-EK----GIKVIVSGLVDEESSS-KGAREVIDKNY---PFYVI 132 (336)
T ss_pred -CcccEEe--CCEEEEecccCCCcHHHHHHHHHHHHH-hC----CCcEEEEEEeCcccCC-ccHHHHHhhcC---CCEEE
Confidence 2455677 999999999999999999999999998 54 3589999999999987 89999998643 23445
Q ss_pred EEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHc-cccchhHHHHhccccCCCceEe
Q 013641 193 VMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITK-FRESQFDVVKAGRAANSEVISV 271 (439)
Q Consensus 193 v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~-~~~~~~~~~~~~~~~~~~~~t~ 271 (439)
+. +|++...++++++|..+++++++|+++|++.|. ||+..|..+++.|.+ +... ++ . ...++
T Consensus 133 i~-----ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~--~ai~~~~~~~~~l~~~~~~~-~~--------~-~~~~~ 195 (336)
T TIGR01902 133 VG-----EPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG--NAAELLIDYSKKIIEVYKQP-EN--------Y-DKPSI 195 (336)
T ss_pred Ee-----cCCCCcceeeeeeeEEEEEEEEEecCcccCCCh--hHHHHHHHHHHHHHHHhccc-cC--------C-CCCcc
Confidence 44 576545789999999999999999999999765 689999999998863 2210 00 0 12467
Q ss_pred eEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCC
Q 013641 272 NLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDD 351 (439)
Q Consensus 272 ~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 351 (439)
+++.++||. ..|+||++|++++|+|+.|.++.+++.++|++. ..+++++.. ...|+. ++.
T Consensus 196 ~~~~i~gg~------~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~~-----~~~~~~~~~-------~~~p~~--~~~ 255 (336)
T TIGR01902 196 VPTIIRFGE------SYNDTPAKLELHFDLRYPPNNKPEEAIKEITDK-----FPICLEIVD-------ETPPYK--VSR 255 (336)
T ss_pred eeEEEEccC------CCcCCCceEEEEEEEeeCCCCCHHHHHHHHHhc-----cCceEEEEe-------ccCcee--cCC
Confidence 888888886 899999999999999999999999998888751 233443332 234443 456
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHh-CCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHH
Q 013641 352 SNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQL-GIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISS 430 (439)
Q Consensus 352 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~-gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~ 430 (439)
++++++.+.+++++.+..+ .+....|++|++++... |+|++.|||+... .+|++||+++++++.+++++|.+++..
T Consensus 256 ~~~lv~~~~~a~~~~~~~~-~~~~~~g~tD~~~~~~~~g~p~v~~Gpg~~~--~aH~~nE~v~i~~l~~~~~~~~~~l~~ 332 (336)
T TIGR01902 256 NNPLVRAFVRAIRKQGMKP-RLKKKTGTSDMNILAPIWTVPMVAYGPGDST--LDHTPQEKISLAEYLIGIKTLMLAIEE 332 (336)
T ss_pred CCHHHHHHHHHHHHcCCCe-EEeeccccCccceeccccCCCeEEECCCCcc--cCCCCcceeEHHHHHHHHHHHHHHHHH
Confidence 7899999999999876432 44456788999999875 9999999998743 689999999999999999999999998
Q ss_pred hhc
Q 013641 431 LSS 433 (439)
Q Consensus 431 ~~~ 433 (439)
+++
T Consensus 333 l~~ 335 (336)
T TIGR01902 333 LWQ 335 (336)
T ss_pred Hhc
Confidence 864
No 39
>PRK07205 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-49 Score=397.02 Aligned_cols=369 Identities=18% Similarity=0.233 Sum_probs=266.1
Q ss_pred CCCCchhHHHHHHhHhcCcCCCCCCC--------CchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEE
Q 013641 24 KSHEEREPITRFKQYLRFNTAHPNPN--------YTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSIL 95 (439)
Q Consensus 24 ~~~~~~~~i~~l~~lv~ips~s~~~~--------e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vl 95 (439)
++++.++++++|++||+|||+|+... ..++++|+.++|+++|++++++. ...++++++ |+ ++++|+
T Consensus 6 ~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~-g~--~~~~ll 79 (444)
T PRK07205 6 TEKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDP---KGYYGYAEI-GQ--GEELLA 79 (444)
T ss_pred HHHhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcC---CCeEEEEEe-cC--CCcEEE
Confidence 45678999999999999999984321 15688899999999999987653 224667776 54 348999
Q ss_pred EeeecccccCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCccc
Q 013641 96 FNSHLDSVPAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFD 174 (439)
Q Consensus 96 l~aH~Dtvp~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~ 174 (439)
|+||+||||+++ +.|+++||++.++ ||+|||||++||||+++++|.|+++|+ +.+.+++++|.|+|++|||+|+ .
T Consensus 80 l~gH~DvVp~~~~~~W~~~Pf~~~v~--dg~lyGRGa~DmKgglaa~l~Al~~l~-~~~~~~~~~i~l~~~~dEE~g~-~ 155 (444)
T PRK07205 80 ILCHLDVVPEGDLSDWQTPPFEAVEK--DGCLFGRGTQDDKGPSMAALYAVKALL-DAGVQFNKRIRFIFGTDEETLW-R 155 (444)
T ss_pred EEEeeccCCCCCcccCCCCCCceEEE--CCEEEECCcccCcHHHHHHHHHHHHHH-HcCCCCCCcEEEEEECCcccCc-c
Confidence 999999999975 6899999999999 999999999999999999999999999 8888889999999999999998 8
Q ss_pred CHHHHHhcccccc----cc--eEEEEec-CC------cCCCCcceEEee-------------------------ccce--
Q 013641 175 GMAKFVESNEFRE----LN--VGFVMDE-GQ------ASTNDDFRVFYA-------------------------DRSP-- 214 (439)
Q Consensus 175 G~~~~~~~~~~~~----~~--~~~v~~~-g~------~~p~~~~~i~~~-------------------------~~G~-- 214 (439)
|++++++...... .+ ..+++.+ |. .+|++...+..+ .+|.
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~ 235 (444)
T PRK07205 156 CMNRYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEY 235 (444)
T ss_pred cHHHHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceE
Confidence 9999987421100 01 1111111 00 012211000010 1221
Q ss_pred --EEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhcc--------------ccCCCceEeeEeEEe
Q 013641 215 --WHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGR--------------AANSEVISVNLVYLK 277 (439)
Q Consensus 215 --~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~--------------~~~~~~~t~~~~~i~ 277 (439)
.+.+|+++|+++|++.|+.| |||..+++++..|+++.. .+.+.... ......+|+|++
T Consensus 236 ~~~~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg--- 310 (444)
T PRK07205 236 VVKENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPA--LDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIA--- 310 (444)
T ss_pred eecCcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHH--HHHHHHhcCCCCccccCCccccCCCcCCceEEeE---
Confidence 23389999999999999988 999999999988864311 11010000 000112344442
Q ss_pred ecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHH
Q 013641 278 AGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWS 357 (439)
Q Consensus 278 gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 357 (439)
..|+||++|++++|+|++|.++.+++.++|++.+++ .+++++... ...|+. ++.++++++
T Consensus 311 ---------~~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~--~~v~~~~~~-------~~~p~~--~~~~~~lv~ 370 (444)
T PRK07205 311 ---------GLTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQE--YGLTYEEFD-------YLAPLY--VPLDSELVS 370 (444)
T ss_pred ---------EEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHH--cCcEEEEec-------CCCcee--eCCCcHHHH
Confidence 347899999999999999999999999999988763 334433221 233333 456789999
Q ss_pred HHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEc---cCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 358 VFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFS---PMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 358 ~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~G---p~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
.+.+++++.++..+.+...++++|+.+ ..|++.|| |+.. .++|++||+++++++.+++++|.+++..+++
T Consensus 371 ~l~~~~~~~~g~~~~~~~~gg~~~~~~----~~~~i~~G~~~Pg~~--~~aH~~nE~v~i~~l~~~~~~l~~~l~~l~~ 443 (444)
T PRK07205 371 TLMSVYQEKTGDDSPAQSSGGATFART----MPNCVAFGALFPGAP--QTEHQANEHIVLEDLYRAMDIYAEAIYRLTT 443 (444)
T ss_pred HHHHHHHHHhCCCCceEEeccHHHHHh----CCCcEEECCccCCCC--CCCcCcccCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999987665423333445555443 35788999 6543 3799999999999999999999999998864
No 40
>PRK13381 peptidase T; Provisional
Probab=100.00 E-value=5e-49 Score=394.60 Aligned_cols=362 Identities=18% Similarity=0.196 Sum_probs=278.8
Q ss_pred hHHHHHHhHhcCcCCCCC--------CCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecc
Q 013641 30 EPITRFKQYLRFNTAHPN--------PNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLD 101 (439)
Q Consensus 30 ~~i~~l~~lv~ips~s~~--------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~D 101 (439)
++++.|.+|++|||+|.. .++.++++||+++|+++|++...++ +.+|||++++|++++.|+|+|+||+|
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~---~~~nvi~~~~g~~~~~~~lll~~H~D 78 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVID---EHAIVTAKLPGNTPGAPRIGFIAHLD 78 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEc---CCeEEEEEEecCCCCCCeEEEEEEec
Confidence 478899999999999842 3578999999999999999655443 67899999987665458999999999
Q ss_pred cccCCCC--------CCCCCCCceeEe----------------CCCCEEEecCc----ccchhHHHHHHHHHHHHHHhcC
Q 013641 102 SVPAEPD--------KWSHPPFSAFHS----------------PETGQIFARGS----QDDKCIAIQYIEAIRNLILVKN 153 (439)
Q Consensus 102 tvp~~~~--------~w~~~Pf~~~~~----------------~~dg~i~GrG~----~D~k~~~aa~l~a~~~l~~~~~ 153 (439)
|||+++. .|..+||.+..+ .+|+++||||+ +|||+++|++|.|++.|. +.+
T Consensus 79 ~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~-~~~ 157 (404)
T PRK13381 79 TVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLT-ENE 157 (404)
T ss_pred CCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHH-hcC
Confidence 9999753 144444433221 12778999999 999999999999999998 765
Q ss_pred CCCCeeEEEEEecCcccCcccCHHHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCC-CC
Q 013641 154 FKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSR-MF 232 (439)
Q Consensus 154 ~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~-p~ 232 (439)
.++++|.|+|+++||.|+ .|++.++.+. +. .|++++++.+ +|+ .+.++.+|..+++|+++|+++|++. |.
T Consensus 158 -~~~g~i~~~~~~dEE~g~-~G~~~~~~~~-~~-~d~~~~~~~~--~~~---~i~~~~~G~~~~~v~v~Gk~aHa~~~p~ 228 (404)
T PRK13381 158 -VEHGDIVVAFVPDEEIGL-RGAKALDLAR-FP-VDFAYTIDCC--ELG---EVVYENFNAASAEITITGVTAHPMSAKG 228 (404)
T ss_pred -CCCCCEEEEEEccccccc-ccHHHHHHhc-CC-CCEEEEecCC--Ccc---eEEEecCcceEEEEEEEeEecCCCCCcc
Confidence 467899999999999987 8999998653 33 5777777654 343 5778899999999999999999875 77
Q ss_pred CC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHH
Q 013641 233 DN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDL 311 (439)
Q Consensus 233 ~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~ 311 (439)
.+ |||..|++++.+|+++.... .. .....+++++.+++ | |++|++++|+|+.|.++.++
T Consensus 229 ~g~NAI~~a~~~i~~l~~~~~~~---~~-----~~~~~~i~v~~i~g----------~--p~~~~~~~diR~~~~~~~e~ 288 (404)
T PRK13381 229 VLVNPILMANDFISHFPRQETPE---HT-----EGREGYIWVNDLQG----------N--VNKAKLKLIIRDFDLDGFEA 288 (404)
T ss_pred cCcCHHHHHHHHHHhCCccCCCC---CC-----CCcccEEEEEeEEe----------C--cceEEEEEEEecCCHHHHHH
Confidence 77 99999999999997753211 00 00113455655543 2 89999999999999999999
Q ss_pred HHHHHHHHhccc--CCC-ceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHh
Q 013641 312 IRRRIAEEWAPA--IRN-MSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQL 388 (439)
Q Consensus 312 i~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~ 388 (439)
+.++|++.+++. ... .++++.... ....++. .+..++++++.+.+++++.+.. +......++||+++|...
T Consensus 289 i~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~lv~~l~~a~~~~g~~-~~~~~~~g~tDa~~~~~~ 362 (404)
T PRK13381 289 RKQFIEEVVAKINAKYPTARVSLTLTD----QYSNISN-SIKDDRRAVDLAFDAMKELGIE-PKVIPMRGGTDGAALSAK 362 (404)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEEe----CCchhhc-ccccCHHHHHHHHHHHHHcCCC-eeeccCCccchHHHHhcC
Confidence 999998887652 222 344443210 0111221 2456789999999999875433 233456789999999888
Q ss_pred CCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 389 GIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 389 gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
|+|++.|||+.. .+|++||+++++++.+++++|..++..+++
T Consensus 363 giP~v~~GpG~~---~aH~~dE~v~i~~l~~~~~v~~~~~~~~~~ 404 (404)
T PRK13381 363 GLPTPNLFTGAH---NFHSRFEFLPVSSFVKSYEVTITICLLAAK 404 (404)
T ss_pred CCCeEEECcccc---CCcCcceeEEHHHHHHHHHHHHHHHHHhcC
Confidence 999999999974 599999999999999999999999988764
No 41
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=8.1e-49 Score=387.84 Aligned_cols=349 Identities=19% Similarity=0.227 Sum_probs=282.5
Q ss_pred hHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecC---CccEEEEEEcCCCCCCCcEEEeeecccccCC
Q 013641 30 EPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVP---NKPILLLTWPGSDPSLPSILFNSHLDSVPAE 106 (439)
Q Consensus 30 ~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~---~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~ 106 (439)
+++++|++|++|||++ ++|.++++||+++|+++|++++.++..+ +++|+++.++|+. ++|+|+|.||+||||++
T Consensus 1 ~~~~~~~~l~~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~i~l~~H~D~V~~~ 77 (361)
T TIGR01883 1 RLKKYFLELIQIDSES--GKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTV-KFDTIFFCGHMDTVPPG 77 (361)
T ss_pred ChHHHHHHHeecCCCC--CcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCC-CCCcEEEEeeccccCCC
Confidence 4688999999999997 7899999999999999999988765332 3689999998764 34899999999999986
Q ss_pred CCCCCCCCCceeEeCCCCEEEecCc----ccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhc
Q 013641 107 PDKWSHPPFSAFHSPETGQIFARGS----QDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVES 182 (439)
Q Consensus 107 ~~~w~~~Pf~~~~~~~dg~i~GrG~----~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 182 (439)
+ ||.+.++ +|++||||+ +|||++++++|.+++.|+ +.+ .++++|.|+|++|||.|+ .|++.+.+.
T Consensus 78 ~------~~~~~~~--~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~-~~~-~~~~~v~~~~~~~EE~g~-~G~~~~~~~ 146 (361)
T TIGR01883 78 A------GPEPVVE--DGIFTSLGGTILGADDKAGVAAMLEAMDVLS-TEE-TPHGTIEFIFTVKEELGL-IGMRLFDES 146 (361)
T ss_pred C------CCCceec--CCeEecCCCeEeeccccHHHHHHHHHHHHHH-hcC-CCCCCEEEEEEcccccCc-hhHhHhChh
Confidence 3 3455566 999999999 999999999999999998 766 467899999999999987 899988764
Q ss_pred ccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcC-CCCCC-cHHHHHHHHHHHHHccccchhHHHHh
Q 013641 183 NEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGS-RMFDN-GAMENLMKSVEMITKFRESQFDVVKA 260 (439)
Q Consensus 183 ~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~ 260 (439)
. . ..+++++++.+ .....++++.+|..+++++++|+++|++ .|+.| ||+..+++++.+|.....
T Consensus 147 ~-~-~~~~~~~~~~~----~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~~-------- 212 (361)
T TIGR01883 147 K-I-TAAYGYCLDAP----GEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGRI-------- 212 (361)
T ss_pred h-c-CcceeEEEeCC----CCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccCC--------
Confidence 3 2 24667777532 1124688899999999999999999986 69988 999999999998864211
Q ss_pred ccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccc
Q 013641 261 GRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIR 338 (439)
Q Consensus 261 ~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~ 338 (439)
....+++++.++||. ..|+||++|++.+++|+.|..+.+++.++|++.++.. ..+.++++...
T Consensus 213 -----~~~~~~~i~~i~gG~------~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~---- 277 (361)
T TIGR01883 213 -----DEETTANIGSFSGGV------NTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATLEEETR---- 277 (361)
T ss_pred -----CCccccccceeecCC------ccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEE----
Confidence 112568888999987 8999999999999999999999888888888777642 33444444431
Q ss_pred cCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHH
Q 013641 339 DYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFL 418 (439)
Q Consensus 339 ~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~ 418 (439)
...|++ .++.|+++++.+.+++++.+.. +......|+||++++...|+|++.|||+.. .+|++||+++++++.
T Consensus 278 --~~~~~~-~~~~~~~lv~~l~~a~~~~g~~-~~~~~~~g~tD~~~~~~~giP~v~~G~g~~---~~Hs~~E~v~i~~~~ 350 (361)
T TIGR01883 278 --LIYEGF-KIHPQHPLMNIFKKAAKKIGLK-TSEIFSGGGSDANVLNEKGVPTVNLSAGYV---HAHTEKETISIEQLV 350 (361)
T ss_pred --eccccc-cCCCCCHHHHHHHHHHHHcCCC-cEEEecCcccHHHHHhhCCCceEEECCCcc---cCcCcceeEEHHHHH
Confidence 122332 2456789999999999885433 244456789999999988999999999973 799999999999999
Q ss_pred HHHHHHHHHH
Q 013641 419 KGVEVYESVI 428 (439)
Q Consensus 419 ~~~~~~~~~l 428 (439)
+++++|..++
T Consensus 351 ~~~~~~~~~~ 360 (361)
T TIGR01883 351 KLAELVIALA 360 (361)
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 42
>PRK06156 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-48 Score=396.67 Aligned_cols=373 Identities=18% Similarity=0.291 Sum_probs=278.6
Q ss_pred CCchhHHHHHHhHhcCcCCCCC---CCC----chHHHHHHHHHHhcCCceEEEEecCCccEEE-EEEcCCCCCCCcEEEe
Q 013641 26 HEEREPITRFKQYLRFNTAHPN---PNY----TAPVSFLISQAQSIGLQFKTLEFVPNKPILL-LTWPGSDPSLPSILFN 97 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~---~~e----~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi-~~~~g~~~~~~~vll~ 97 (439)
++.++++++|++||+|||+++. ++| .+.++||.++|+++|++++.. ..+++ ++++|. +.++|+|+
T Consensus 43 ~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~-----~~~v~~~~~~g~--~~~~l~l~ 115 (520)
T PRK06156 43 KYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV-----DNRVLEIGLGGS--GSDKVGIL 115 (520)
T ss_pred hhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec-----CCeEEEEEecCC--CCCeEEEE
Confidence 4678999999999999999842 123 356799999999999987532 22344 677664 34899999
Q ss_pred eecccccCCCCCCCC-----CCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc
Q 013641 98 SHLDSVPAEPDKWSH-----PPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG 172 (439)
Q Consensus 98 aH~Dtvp~~~~~w~~-----~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~ 172 (439)
|||||||++..+|++ +||.+.++ ||+|||||++|||++++++|.|++.|. +.+.+++++|.|+|++|||.|+
T Consensus 116 gH~DvVp~~~~~W~~~~~~~~Pf~~~~~--~g~lyGRG~~D~Kgg~a~~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~ 192 (520)
T PRK06156 116 THADVVPANPELWVLDGTRLDPFKVTLV--GDRLYGRGTEDDKGAIVTALYAMKAIK-DSGLPLARRIELLVYTTEETDG 192 (520)
T ss_pred EecCccCCCCccCccCCccCCCCceEEE--CCEEEEcCcccchHHHHHHHHHHHHHH-HcCCCCCceEEEEEecccccCc
Confidence 999999998778999 99999998 999999999999999999999999999 8888888999999999999998
Q ss_pred ccCHHHHHhcccccccceEEEEecCC----cCCCC---------------cce---------------------------
Q 013641 173 FDGMAKFVESNEFRELNVGFVMDEGQ----ASTND---------------DFR--------------------------- 206 (439)
Q Consensus 173 ~~G~~~~~~~~~~~~~~~~~v~~~g~----~~p~~---------------~~~--------------------------- 206 (439)
.|+++++++... .++.+++|... .+|+. ...
T Consensus 193 -~G~~~~~~~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~ 269 (520)
T PRK06156 193 -DPLKYYLERYTP--PDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPA 269 (520)
T ss_pred -hhHHHHHHhcCC--CCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHH
Confidence 899999976432 24444333210 01110 000
Q ss_pred ------------EEeeccceE---------EEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHcccc-chh----HHHH
Q 013641 207 ------------VFYADRSPW---------HLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRE-SQF----DVVK 259 (439)
Q Consensus 207 ------------i~~~~~G~~---------~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~-~~~----~~~~ 259 (439)
+..+++|.. +++|+++|+++|++.|+.| |||..+++++..|+++.. ... +.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~ 349 (520)
T PRK06156 270 ALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYIN 349 (520)
T ss_pred HHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 011222443 7999999999999999988 999999999999976221 100 0010
Q ss_pred h--c------------cccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--
Q 013641 260 A--G------------RAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA-- 323 (439)
Q Consensus 260 ~--~------------~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~-- 323 (439)
. + ........+++++.+++|. +.|++++|+|++|.++.+++.++|++.+.+.
T Consensus 350 ~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~gg~------------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~ 417 (520)
T PRK06156 350 DLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVGQDD------------KGTEVTVNLRRPVGKTPELLKGEIADALAAWQA 417 (520)
T ss_pred HhhCCCCccCcCCccccCCCccCcEEeeeEEEEeC------------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 0 0000122456676666652 5799999999999999999999999887642
Q ss_pred CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCC-C
Q 013641 324 IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANT-P 402 (439)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~-~ 402 (439)
..++++++... ...|.. .+.++++++.+.+++++..+..+.+...+++||++++. +++.|||+... .
T Consensus 418 ~~gv~ve~~~~------~~~p~~--~~~d~~lv~~l~~a~~~~~G~~~~~~~~~ggTDa~~~~----~~v~fGP~~~g~~ 485 (520)
T PRK06156 418 KHQVALDIDYY------WGEPMV--RDPKGPWLKTLLDVFGHFTGLDAKPVAIAGSTNAKLFP----NAVSFGPAMPGVK 485 (520)
T ss_pred hcCceEEEeec------CCCcee--eCCCCHHHHHHHHHHHHHhCCCCceeeecChhhhhhCC----ccEEEcCCCCCCC
Confidence 34555555431 223332 45678999999999999877655666678999998884 58899996321 1
Q ss_pred CCCCCCCCccchHhHHHHHHHHHHHHHHhhccc
Q 013641 403 ILLHDHNEFLKDTVFLKGVEVYESVISSLSSFV 435 (439)
Q Consensus 403 ~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~~ 435 (439)
..+|++||+++++++.+++++|.+++..+++..
T Consensus 486 ~~aHt~dE~V~ie~l~~~~~i~~~~l~~l~~~~ 518 (520)
T PRK06156 486 YTGHTENEFKTVEQFMLDLQMYTEMLIRIGNLP 518 (520)
T ss_pred CCCcCcccCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 258999999999999999999999999998754
No 43
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=2.6e-48 Score=395.59 Aligned_cols=368 Identities=19% Similarity=0.268 Sum_probs=273.5
Q ss_pred CCchhHHHHHHhHhcCcCCCCC----------CCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEE
Q 013641 26 HEEREPITRFKQYLRFNTAHPN----------PNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSIL 95 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~----------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vl 95 (439)
.+.++++++|++|++|||+++. .++.++++|++++|+++|++++.++ |+++...... +.++|+
T Consensus 11 ~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~------n~~~~~~~~~-~~~~l~ 83 (466)
T PRK07318 11 KRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD------NYAGHIEYGE-GEEVLG 83 (466)
T ss_pred HhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec------CccceEEECC-CCCEEE
Confidence 4668899999999999999843 1356899999999999999988653 4555543212 347999
Q ss_pred EeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccC
Q 013641 96 FNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDG 175 (439)
Q Consensus 96 l~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G 175 (439)
|+||+||||++ ++|+++||.+.++ ||+|||||++||||++++++.|++.|+ +.+.+++++|.|+|++|||.|+ .|
T Consensus 84 l~gH~DvVp~~-~~W~~~Pf~~~~~--dg~lyGRG~~DmKgg~aa~l~Al~~l~-~~g~~~~~~i~l~~~~DEE~g~-~G 158 (466)
T PRK07318 84 ILGHLDVVPAG-DGWDTDPYEPVIK--DGKIYARGTSDDKGPTMAAYYALKIIK-ELGLPLSKKVRFIVGTDEESGW-KC 158 (466)
T ss_pred EEEecCCCCCC-CCCCCCCcceEEE--CCEEEEcccccCcHHHHHHHHHHHHHH-HcCCCCCccEEEEEEcccccCc-hh
Confidence 99999999997 4799999999999 999999999999999999999999999 8888888999999999999998 89
Q ss_pred HHHHHhcccccccceEEEEec---------------------------------CCcCCCCc-c----------------
Q 013641 176 MAKFVESNEFRELNVGFVMDE---------------------------------GQASTNDD-F---------------- 205 (439)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~---------------------------------g~~~p~~~-~---------------- 205 (439)
++++++..... ++.++.+. |+ .+++. +
T Consensus 159 ~~~l~~~~~~~--~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~p~~~~~~~~~~~~~~~~ 235 (466)
T PRK07318 159 MDYYFEHEEAP--DFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSG-LRENMVPDSAEAVITGDDLDDLI 235 (466)
T ss_pred HHHHHHhCCCC--CEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcC-ccceecCcccEEEEecCCHHHHH
Confidence 99999864211 11111110 00 01100 0
Q ss_pred ------eEEeeccceE-----EEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccc--hhHHHHh-----------
Q 013641 206 ------RVFYADRSPW-----HLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRES--QFDVVKA----------- 260 (439)
Q Consensus 206 ------~i~~~~~G~~-----~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~--~~~~~~~----------- 260 (439)
.+..+++|.. +++|+++|+++|++.|+.| |||..|++++..|...... .++.+..
T Consensus 236 ~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (466)
T PRK07318 236 AAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKL 315 (466)
T ss_pred HHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccC
Confidence 0112466654 6999999999999999999 9999999999998642110 1111110
Q ss_pred ---ccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeecccc
Q 013641 261 ---GRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPI 337 (439)
Q Consensus 261 ---~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (439)
.........|++++.+++|. .. .|++.+|+|+.|.++.+++.++|++.++. .++++++..
T Consensus 316 ~~~~~~~~~g~~t~nvg~i~gg~------~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~--~~~~~~~~~---- 378 (466)
T PRK07318 316 GIAYEDDVMGDLTMNVGVFSFDE------EK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGV--TGVELSEHE---- 378 (466)
T ss_pred CCcccCCCccCeEEEeeEEEEec------Cc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHh--cCeEEEEcc----
Confidence 00001124688999999874 21 79999999999999999999999888763 334433321
Q ss_pred ccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhH
Q 013641 338 RDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVF 417 (439)
Q Consensus 338 ~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l 417 (439)
...|.. .+.++++++.+.+++++..+..+.+...+++||++++.. ++|...++|+.. .++|++||+++++++
T Consensus 379 ---~~~p~~--~~~d~~lv~~l~~a~~~~~g~~~~~~~~~ggtDa~~~~~-~i~~Gp~~pg~~--~~aH~~dE~v~i~~l 450 (466)
T PRK07318 379 ---HQKPHY--VPKDDPLVKTLLKVYEKQTGLKGEEQVIGGGTYARLLKR-GVAFGAMFPGSE--DTMHQANEYIEIDDL 450 (466)
T ss_pred ---CCCcee--eCCCCHHHHHHHHHHHHHhCCCCCeeEEcchHhHhhCCC-eEEeCCCCCCCC--CCCcCCCcceeHHHH
Confidence 233433 356799999999999987665545556778999999974 554333334433 269999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 013641 418 LKGVEVYESVISSLSS 433 (439)
Q Consensus 418 ~~~~~~~~~~l~~~~~ 433 (439)
.+++++|.+++..+++
T Consensus 451 ~~~~~v~~~~l~~~~~ 466 (466)
T PRK07318 451 IKAAAIYAEAIYELAK 466 (466)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998864
No 44
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=2.7e-46 Score=377.81 Aligned_cols=366 Identities=13% Similarity=0.127 Sum_probs=280.0
Q ss_pred hhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCC-
Q 013641 29 REPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEP- 107 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~- 107 (439)
+.+.++.+.++++|+++ ++|.++++||+++|+++|+++++.. ...|+++++ |.+. +|+|+|+||||+||+++
T Consensus 97 ~~l~~l~r~lh~~PEls--~~E~~t~~~i~~~L~~~G~~~~~~~---~~~~vva~~-g~~~-~~~I~l~gh~DaVP~~e~ 169 (478)
T PLN02280 97 AWLKSVRRKIHENPELA--FEEYKTSELVRSELDRMGIMYRYPL---AKTGIRAWI-GTGG-PPFVAVRADMDALPIQEA 169 (478)
T ss_pred HHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHHHCCCeEEecC---CCCEEEEEE-CCCC-CCEEEEEEecCCCcccCC
Confidence 44455555566677765 7899999999999999999987643 467999998 5443 38999999999999975
Q ss_pred CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccc
Q 013641 108 DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRE 187 (439)
Q Consensus 108 ~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 187 (439)
.+|.++| ++ ||++||||+ | +++|++|.|++.|+ +.+.+++++|.|+|++|||.| .|++++++++.+++
T Consensus 170 ~~w~~~p----~~--~G~~h~cGh-d--~~~A~~l~a~~~L~-~~~~~~~g~V~~if~pdEE~g--~Ga~~li~~g~~~~ 237 (478)
T PLN02280 170 VEWEHKS----KV--AGKMHACGH-D--AHVAMLLGAAKILK-SREHLLKGTVVLLFQPAEEAG--NGAKRMIGDGALDD 237 (478)
T ss_pred CCCCCCC----CC--CCeEEeCCC-c--HHHHHHHHHHHHHH-hccccCCceEEEEeccccccc--chHHHHHHCCCCcC
Confidence 5799888 44 999999994 5 79999999999998 777778999999999999986 49999999987776
Q ss_pred cceEEEEecCCcCCCCc--ceEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhcccc
Q 013641 188 LNVGFVMDEGQASTNDD--FRVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAA 264 (439)
Q Consensus 188 ~~~~~v~~~g~~~p~~~--~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~ 264 (439)
.|..++++.+..+|++. .......+|..+++|+++|+++|++.|+.| |||..|++++..|+++.... . .
T Consensus 238 ~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~---~-----~ 309 (478)
T PLN02280 238 VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSRE---A-----N 309 (478)
T ss_pred CCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcc---c-----C
Confidence 77777665443234321 011223459999999999999999999999 99999999999998753110 0 0
Q ss_pred CCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcc--cCCCceEEEeeccccccCCC
Q 013641 265 NSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAP--AIRNMSYEIIEKGPIRDYKG 342 (439)
Q Consensus 265 ~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~ 342 (439)
.....+++++.++||. +.|+||++|++.+++|+.+.++.+++.++|++.++. ...+++++++... ..
T Consensus 310 ~~~~~tvnvg~I~GG~------~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~~~~-----~~ 378 (478)
T PLN02280 310 PLDSQVVSVTTMDGGN------NLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSATVDFFE-----KQ 378 (478)
T ss_pred CCCCcEEEEEEEEccC------CCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEec-----cc
Confidence 1123688999999987 999999999999999999999999999999988764 2345555554210 11
Q ss_pred CCccccCCCCChHHHHHHHHHHHhCCCCC--ccccccCCccHHHHHHhCCCEEEE--ccCCC---CCCCCCCCCCccchH
Q 013641 343 RPLMTLTDDSNPWWSVFKRAVTSAGGKLG--KPEILASTTDARYMRQLGIPVLGF--SPMAN---TPILLHDHNEFLKDT 415 (439)
Q Consensus 343 ~p~~~~~~~~~~~~~~l~~a~~~~~~~~~--~~~~~~~~tD~~~~~~~gip~v~~--Gp~~~---~~~~~H~~nE~i~~~ 415 (439)
.+.+.++.++.++++.+.++..+..+... ......+++|+++|.+. +|++.| |+++. ....+|+++|+++++
T Consensus 379 ~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g~tD~~~~~~~-vP~i~~glG~~~~~~G~~~~~Htp~e~id~~ 457 (478)
T PLN02280 379 NTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMGAEDFSFYSQV-VPAAFYYIGIRNETLGSTHTGHSPYFMIDED 457 (478)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCeeechHHHHHhh-CCEEEEEEeecCCCCCCCCCCCCCCCcCCHH
Confidence 11112245577899999999877655321 11234688999999874 999866 44321 112689999999999
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 013641 416 VFLKGVEVYESVISSLSS 433 (439)
Q Consensus 416 ~l~~~~~~~~~~l~~~~~ 433 (439)
+|..++++|+.++..+..
T Consensus 458 ~L~~~~~~~~~~~~~~l~ 475 (478)
T PLN02280 458 VLPIGAAVHAAIAERYLI 475 (478)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 45
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=8.3e-46 Score=372.10 Aligned_cols=363 Identities=15% Similarity=0.119 Sum_probs=280.6
Q ss_pred CchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCC
Q 013641 27 EEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAE 106 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~ 106 (439)
..+++++++++|+++|++| ++|.++++||+++|+++|++++... +.+||++++ |+++ +|+|+|+|||||||+.
T Consensus 45 ~~~~~~~~r~~lh~~PE~s--~~E~~ta~~i~~~L~~~G~~~~~~~---~~~~via~~-g~~~-g~~i~l~~h~DaVp~~ 117 (437)
T PLN02693 45 VFDWMVRIRRKIHENPELG--YEEFETSKLIRSELDLIGIKYRYPV---AITGIIGYI-GTGE-PPFVALRADMDALPIQ 117 (437)
T ss_pred hHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHHCCCeeEecC---CCcEEEEEE-CCCC-CCEEEEEeecCCCcCC
Confidence 3467899999999999998 8999999999999999999976421 468999998 4333 4899999999999997
Q ss_pred C-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccc
Q 013641 107 P-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEF 185 (439)
Q Consensus 107 ~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 185 (439)
+ .+|.++||. +|++|||| +|+++|++|.|++.|+ +.+.+++++|.|+|++|||. + .|++.+++++.+
T Consensus 118 e~~~~~~~p~~------~G~~hacG---hkg~~A~~l~Aa~~L~-~~~~~~~g~V~~if~pdEE~-~-~Ga~~~i~~g~~ 185 (437)
T PLN02693 118 EAVEWEHKSKI------PGKMHACG---HDGHVAMLLGAAKILQ-EHRHHLQGTVVLIFQPAEEG-L-SGAKKMREEGAL 185 (437)
T ss_pred CCCCCCCCCCC------CCCEECCc---chHHHHHHHHHHHHHH-hCcccCCceEEEEEEEcccc-h-hhHHHHHHCCCC
Confidence 6 579999973 89999886 4899999999999999 87666789999999999994 3 599999998876
Q ss_pred cccceEEEEecCCcCCCCc-ceEEe----eccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHH
Q 013641 186 RELNVGFVMDEGQASTNDD-FRVFY----ADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVK 259 (439)
Q Consensus 186 ~~~~~~~v~~~g~~~p~~~-~~i~~----~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~ 259 (439)
++.+..+.... .|+.. ..+.. ..+|..+++|+++|+++|++.|+.| |||..+++++.+|+++.... .
T Consensus 186 ~~~~~iig~h~---~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~---~- 258 (437)
T PLN02693 186 KNVEAIFGIHL---SPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRE---T- 258 (437)
T ss_pred CCCCEEEEEec---CCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhccc---C-
Confidence 65554443322 23211 11221 1468889999999999999999999 99999999999998763211 0
Q ss_pred hccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeecccc
Q 013641 260 AGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPI 337 (439)
Q Consensus 260 ~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~ 337 (439)
. .....+++++.++||. +.|+||++|++++++|+.+. .+.+.++|+++++.. .+++.++++..
T Consensus 259 ~----~~~~~ti~vg~i~GG~------~~NvVPd~a~~~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~e~~~~--- 323 (437)
T PLN02693 259 D----PLDSKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNASVNLT--- 323 (437)
T ss_pred C----CCCCcEEEEEEEEcCC------CCceECCeEEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEEEEEe---
Confidence 0 0123689999999987 99999999999999999986 468889998887642 34555555431
Q ss_pred ccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCc--cccccCCccHHHHHHhCCCEE--EEccCCCC--CCCCCCCCCc
Q 013641 338 RDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGK--PEILASTTDARYMRQLGIPVL--GFSPMANT--PILLHDHNEF 411 (439)
Q Consensus 338 ~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~--~~~~~~~tD~~~~~~~gip~v--~~Gp~~~~--~~~~H~~nE~ 411 (439)
...+|++.++.+|.++++.+.+++++..+.... .....+++|++|+.+ .+|.+ .+|++... ....|+|+++
T Consensus 324 --~~~~~~~~~~~nd~~l~~~~~~~~~~~~G~~~~~~~~~~~gseDf~~~~~-~vP~~~~~lG~~~~~~~~~~~H~~~f~ 400 (437)
T PLN02693 324 --PNGREPMPPTVNNMDLYKQFKKVVRDLLGQEAFVEAAPEMGSEDFSYFAE-TIPGHFSLLGMQDETNGYASSHSPLYR 400 (437)
T ss_pred --ecCccCCCCccCCHHHHHHHHHHHHHhcCCcceeecCCCceechHHHHHH-HhhhhEEEEecCCCCCCCCCCCCCCcC
Confidence 012334344566778999999999997665311 223458999999987 68887 66766311 1258999999
Q ss_pred cchHhHHHHHHHHHHHHHHhhc
Q 013641 412 LKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 412 i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
++.+.|..++++|+.++.++.+
T Consensus 401 ~de~~l~~~~~~~~~~~~~~l~ 422 (437)
T PLN02693 401 INEDVLPYGAAIHATMAVQYLK 422 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888754
No 46
>PRK05469 peptidase T; Provisional
Probab=100.00 E-value=1e-46 Score=378.40 Aligned_cols=364 Identities=18% Similarity=0.183 Sum_probs=276.9
Q ss_pred hhHHHHHHhHhcCcCCCCC--------CCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCC-CCCCcEEEeee
Q 013641 29 REPITRFKQYLRFNTAHPN--------PNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSD-PSLPSILFNSH 99 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~--------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~-~~~~~vll~aH 99 (439)
+++++.|++|++|||+|.. .++.++++||+++|+++|+++..++ ..+||++.++|+. ++.|+|+|+||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~---~~~~v~~~~~g~~~~~~~~i~l~~H 78 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLD---ENGYVMATLPANVDKDVPTIGFIAH 78 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEC---CCeEEEEEecCCCCCCCCeEEEEEe
Confidence 5789999999999999843 3478999999999999999733332 4678999998753 24599999999
Q ss_pred cccccCCC----------------------CCCCCCCCceeEeC--CCCEEEecCc----ccchhHHHHHHHHHHHHHHh
Q 013641 100 LDSVPAEP----------------------DKWSHPPFSAFHSP--ETGQIFARGS----QDDKCIAIQYIEAIRNLILV 151 (439)
Q Consensus 100 ~Dtvp~~~----------------------~~w~~~Pf~~~~~~--~dg~i~GrG~----~D~k~~~aa~l~a~~~l~~~ 151 (439)
|||||+.+ +.|.++||.+.... .+|.+||||+ +|||++++++|.|++.|+ +
T Consensus 79 ~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~-~ 157 (408)
T PRK05469 79 MDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLI-A 157 (408)
T ss_pred ccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHH-h
Confidence 99999854 22444444433330 2478999998 999999999999999999 7
Q ss_pred cCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCC-
Q 013641 152 KNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSR- 230 (439)
Q Consensus 152 ~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~- 230 (439)
.+..++++|.|+|+++||.| .|++.++.+. + ..++.++++. .|.+ .+.++.+|..+++|+++|+++|++.
T Consensus 158 ~~~~~~g~v~~~f~~dEE~g--~Ga~~~~~~~-~-~~~~~~~~~~---~~~g--~~~~~~~g~~~~~i~v~Gk~~Ha~~~ 228 (408)
T PRK05469 158 HPEIKHGDIRVAFTPDEEIG--RGADKFDVEK-F-GADFAYTVDG---GPLG--ELEYENFNAASAKITIHGVNVHPGTA 228 (408)
T ss_pred CCCCCCCCEEEEEecccccC--CCHHHhhhhh-c-CCcEEEEecC---CCcc--eEEeccCceeEEEEEEeeecCCCCCC
Confidence 76567899999999999987 5998887443 2 2456676753 2432 4677789999999999999999875
Q ss_pred CCCC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCH
Q 013641 231 MFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDP 309 (439)
Q Consensus 231 p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~ 309 (439)
|+.| |||..++++++.|+++.... . ......+++++.++| .|++|++++++|+.+.++.
T Consensus 229 p~~g~nAi~~~~~~i~~l~~~~~~~---~-----~~~~~~~i~~g~i~g------------gp~~~~i~~diR~~~~e~~ 288 (408)
T PRK05469 229 KGKMVNALLLAADFHAMLPADETPE---T-----TEGYEGFYHLTSIKG------------TVEEAELSYIIRDFDREGF 288 (408)
T ss_pred cccccCHHHHHHHHHHhCCCCCCCC---C-----CCCceEEEEEEEEEE------------ccceEEEEEEEecCCHHHH
Confidence 7888 99999999999887653211 0 000112455555554 3799999999999999999
Q ss_pred HHHHHHHHHHhccc--CC-CceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHH
Q 013641 310 DLIRRRIAEEWAPA--IR-NMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMR 386 (439)
Q Consensus 310 ~~i~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~ 386 (439)
+++.++|++.++.. .. +.+++++.. ..+.++...+.+++++++.+++++++.+... ......+++|++++.
T Consensus 289 e~i~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lv~~~~~a~~~~g~~~-~~~~~~ggtD~~~~~ 362 (408)
T PRK05469 289 EARKALMQEIAKKVNAKYGEGRVELEIK-----DQYYNMREKIEPHPHIVDLAKQAMEDLGIEP-IIKPIRGGTDGSQLS 362 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEe-----ehhhhhhhhhcCCHHHHHHHHHHHHHcCCCc-EEecCCCcccHHHHh
Confidence 99999999888752 12 344555431 0122221235677899999999999864332 334467899999998
Q ss_pred HhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhcc
Q 013641 387 QLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSSF 434 (439)
Q Consensus 387 ~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~ 434 (439)
..|+|++.|||+.. .+|++||+++++++..++++|.+++..++..
T Consensus 363 ~~giP~v~~gpG~~---~~H~~~E~v~i~~l~~~~~~~~~~~~~~~~~ 407 (408)
T PRK05469 363 FMGLPCPNIFTGGH---NFHGKFEFVSLESMEKAVEVIVEIAELTAER 407 (408)
T ss_pred hCCCceEEECcCcc---cCcCcceeeEHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999864 5999999999999999999999999888753
No 47
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=100.00 E-value=6.2e-46 Score=379.04 Aligned_cols=350 Identities=17% Similarity=0.208 Sum_probs=263.5
Q ss_pred chhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCC--CCCCcEEEeeecccccC
Q 013641 28 EREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSD--PSLPSILFNSHLDSVPA 105 (439)
Q Consensus 28 ~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~--~~~~~vll~aH~Dtvp~ 105 (439)
.++++++|++|++|||+| ++|.++++||+++|+++|++++++ ..+|++++++|+. ++.|+|+|.|||||||+
T Consensus 3 ~~~~~~~l~~l~~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~----~~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~ 76 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPS--KNEKEVSNFIVNWAKKLGLEVKQD----EVGNVLIRKPATPGYENHPPIVLQGHMDMVCE 76 (477)
T ss_pred HHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHHHcCCeEEEe----CCCeEEEEEcCCCCCCCCCeEEEEeeccccCC
Confidence 468899999999999986 789999999999999999998876 3579999997642 23589999999999999
Q ss_pred CC----CCCCCCCCceeEeCCCCEEEecCcc---cchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHH
Q 013641 106 EP----DKWSHPPFSAFHSPETGQIFARGSQ---DDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAK 178 (439)
Q Consensus 106 ~~----~~w~~~Pf~~~~~~~dg~i~GrG~~---D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 178 (439)
++ ..|+.+||.+.++ ||+|||||++ |||++++++|.+++. .+. .+++|.++|++|||.|+ .|++.
T Consensus 77 ~~~~~~~~w~~~p~~~~~~--~~~i~GrG~~lg~D~k~gva~~l~~~~~----~~~-~~~~i~~~~~~dEE~g~-~Gs~~ 148 (477)
T TIGR01893 77 KNEDSLHDFEKDPIELIID--GDWLKARGTTLGADNGIGVAMGLAILED----NNL-KHPPLELLFTVDEETGM-DGALG 148 (477)
T ss_pred CCCCCCCCCCCCCeEEEEe--CCEEEECCccccccccHHHHHHHHHHhc----CCC-CCCCEEEEEEeccccCc-hhhhh
Confidence 75 3799999999998 9999999995 999999999988654 232 45799999999999986 79998
Q ss_pred HHhcccccccceEEEEecCCc------CCCCc-ce----EEee--ccceEEEEEEEee-CCCCcCC-CCCC--cHHHHHH
Q 013641 179 FVESNEFRELNVGFVMDEGQA------STNDD-FR----VFYA--DRSPWHLIIRAKG-APGHGSR-MFDN--GAMENLM 241 (439)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~g~~------~p~~~-~~----i~~~--~~G~~~~~v~v~G-~~~Hs~~-p~~g--nai~~~~ 241 (439)
+..+. +. .++.++.|.... .|.+. .. +.+. .+|..+++|+++| +++|+|. |..+ ||+..|+
T Consensus 149 l~~~~-~~-~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa 226 (477)
T TIGR01893 149 LDENW-LS-GKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMA 226 (477)
T ss_pred cChhh-cC-CcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHH
Confidence 87542 22 344455442100 11110 01 1111 4788999999999 9999986 7655 9999999
Q ss_pred HHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCC---------------
Q 013641 242 KSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPT--------------- 306 (439)
Q Consensus 242 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~--------------- 306 (439)
++|..|.+.. .++++.+.||. +.|+||++|++++++|..+.
T Consensus 227 ~~i~~l~~~~------------------~~~v~~~~gg~------~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~ 282 (477)
T TIGR01893 227 RVLNELKENL------------------NFRLSDIKGGS------KRNAIPREAKALIAIDENDVKLLENLVKNFQSKFK 282 (477)
T ss_pred HHHHhhhhcC------------------CeEEEEEeCCC------cccccCCceEEEEEEChhHHHHHHHHHHHHHHHHH
Confidence 9999997642 14456666665 77777777777777665444
Q ss_pred --------------------------------------------------------------------------------
Q 013641 307 -------------------------------------------------------------------------------- 306 (439)
Q Consensus 307 -------------------------------------------------------------------------------- 306 (439)
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~t~n~g~i~~~~~~~~~~i~~R~~~ 362 (477)
T TIGR01893 283 SEYSELEPNITIEVSKRENSVKVFSENTTDKLINALNGLPNGVQSVSDEEPGLVESSLNLGVVKTKENKVIFTFLIRSSV 362 (477)
T ss_pred HHhcccCCCeEEEEEECCCcccccCHHHHHHHHHHHHHCCccceeeccCCCCeEEeeeeEEEEEEcCCEEEEEEEeCCCC
Confidence
Q ss_pred -CCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHH
Q 013641 307 -VDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYM 385 (439)
Q Consensus 307 -~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~ 385 (439)
++.+++.++|++.++ ..++++++. ....|+. ++.|+|+++.+.+++++.++..+.+...+|++|+++|
T Consensus 363 ~~~~~~i~~~i~~~~~--~~~~~v~~~-------~~~~p~~--~~~d~plv~~l~~a~~~~~g~~~~~~~~~Ggtd~~~~ 431 (477)
T TIGR01893 363 ESDKDYVTEKIESIAK--LAGARVEVS-------AGYPSWQ--PDPQSNLLDTARKVYSEMFGEDPEVKVIHAGLECGII 431 (477)
T ss_pred chhHHHHHHHHHHHhh--hcCeEEEEe-------cCCCccc--CCCCCHHHHHHHHHHHHHHCCCCeEEEeecCccHHHH
Confidence 444444444444433 122333332 1234443 5678999999999999998776455667789999988
Q ss_pred HHh--CCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHh
Q 013641 386 RQL--GIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSL 431 (439)
Q Consensus 386 ~~~--gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~ 431 (439)
... ++|++.|||+.. ++|+|||+++++++.++++++++++..+
T Consensus 432 ~~~~~~i~~v~~Gp~~~---~~H~~nE~i~i~~l~~~~~~~~~ll~~~ 476 (477)
T TIGR01893 432 SSKIPDIDMISIGPNIY---DPHSPNERVSISSVEKVWDFLVKVLERL 476 (477)
T ss_pred HhhCCCceEEEeCCCCC---CCCCCCceeeHHHHHHHHHHHHHHHHhc
Confidence 875 789999999753 6999999999999999999999998654
No 48
>PRK08554 peptidase; Reviewed
Probab=100.00 E-value=7.5e-46 Score=373.17 Aligned_cols=371 Identities=19% Similarity=0.229 Sum_probs=266.8
Q ss_pred hHHHHHHhHhcCcCCCCCC----CCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC
Q 013641 30 EPITRFKQYLRFNTAHPNP----NYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA 105 (439)
Q Consensus 30 ~~i~~l~~lv~ips~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~ 105 (439)
+++++|++|++|||++... .+.++++|++++|+++|++++.++.. +.+|+++.+ |. +.++|+|+||+||||+
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-~~~~l~~~~-~~--~~~~l~l~gH~DtVp~ 77 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKD-GYYAVYGEI-GE--GKPKLLFMAHFDVVPV 77 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecC-CceEEEEEe-CC--CCCEEEEEeccccCCC
Confidence 5789999999999987322 26799999999999999998877543 457999998 43 2478999999999999
Q ss_pred CCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcc--
Q 013641 106 EPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESN-- 183 (439)
Q Consensus 106 ~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~-- 183 (439)
+++.|+.+||.+.++ ||++||||++|||++++++|.|++.|+ +.+ ++++|.|+|++|||.|+ .+...+++..
T Consensus 78 ~~~~w~~~Pf~~~~~--~g~lyGrG~~DmKgg~aa~l~A~~~l~-~~~--~~~~i~l~~~~dEE~g~-~~~~~~~~~~~~ 151 (438)
T PRK08554 78 NPEEWNTEPFKLTVK--GDKAYGRGSADDKGNVASVMLALKELS-KEP--LNGKVIFAFTGDEEIGG-AMAMHIAEKLRE 151 (438)
T ss_pred CccccccCCceeEEE--CCEEEECCcccchHHHHHHHHHHHHHH-hcC--CCCCEEEEEEcccccCc-cccHHHHHHHHh
Confidence 866799999999999 999999999999999999999999998 643 67899999999999987 4444665532
Q ss_pred cccccceEEEEecCCcCCCCcceEE-eeccceEEEEEE--------------------EeeC-CCCcCCCCCC---cHHH
Q 013641 184 EFRELNVGFVMDEGQASTNDDFRVF-YADRSPWHLIIR--------------------AKGA-PGHGSRMFDN---GAME 238 (439)
Q Consensus 184 ~~~~~~~~~v~~~g~~~p~~~~~i~-~~~~G~~~~~v~--------------------v~G~-~~Hs~~p~~g---nai~ 238 (439)
.....+++++. +|+. ..++ .+.+|. .++++ +.|. .+|++.+..+ +++.
T Consensus 152 ~~~~~~~~iv~-----Ept~-~~~~~~~~kg~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~ 224 (438)
T PRK08554 152 EGKLPKYMINA-----DGIG-MKPIIRRRKGF-GVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLI 224 (438)
T ss_pred cCCCCCEEEEe-----CCCC-CcchhhcCCce-EEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHH
Confidence 11235666666 4553 2323 333343 34444 4444 4999987665 5688
Q ss_pred HHHHHHHHHHccccchhHHHHhccc-c--CCCceEeeEeEEeecccC---C--------------------------CCc
Q 013641 239 NLMKSVEMITKFRESQFDVVKAGRA-A--NSEVISVNLVYLKAGIPS---P--------------------------TGF 286 (439)
Q Consensus 239 ~~~~~i~~l~~~~~~~~~~~~~~~~-~--~~~~~t~~~~~i~gg~~~---~--------------------------~g~ 286 (439)
.+++++.++..+.... .-+.. . .....++++....+|.-. . -..
T Consensus 225 ~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (438)
T PRK08554 225 AASHFLRESNVLAVSL----EGKFLKGNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSI 300 (438)
T ss_pred HHHHHHhhcCceEEEE----eeeeeecCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceee
Confidence 8887777665321000 00000 0 000112222111111100 0 001
Q ss_pred ccccc---cCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHH
Q 013641 287 VMNMQ---PSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAV 363 (439)
Q Consensus 287 ~~n~i---P~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~ 363 (439)
..|++ |++|++++|+|+.| .+.+++.++|++.++...++++++++.. ....|.. ++.++++++.+++++
T Consensus 301 ~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~lv~~~~~~~ 372 (438)
T PRK08554 301 TPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEVEIRTN-----EKAGYLF--TPPDEEIVKVALRVL 372 (438)
T ss_pred ccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceEEEEec-----cCCCCcC--CCCChHHHHHHHHHH
Confidence 44555 89999999999988 6889999999988864345566666532 1122332 456899999999999
Q ss_pred HHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 364 TSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 364 ~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
++.+ ..+.+...+|+||++++...|+|++.|||++. ++|++|||++++++.+++++|.+++..+++
T Consensus 373 ~~~g-~~~~~~~~~GgtDa~~~~~~Gip~v~~Gp~~~---~~H~~~E~v~i~~l~~~~~i~~~~i~~l~~ 438 (438)
T PRK08554 373 KELG-EDAEPVEGPGASDSRYFTPYGVKAIDFGPKGG---NIHGPNEYVEIDSLKKMPEVYKRIALRLLG 438 (438)
T ss_pred HHhC-CCcEEEecCCchHHHHHHhcCCCceEECCCCC---CCCCCcceEEHHHHHHHHHHHHHHHHHHhC
Confidence 8855 43466677899999999989999999999864 699999999999999999999999988753
No 49
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=100.00 E-value=2.1e-45 Score=370.50 Aligned_cols=361 Identities=20% Similarity=0.296 Sum_probs=264.8
Q ss_pred hhHHHHHHhHhcCcCCCCC--C--------CCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEee
Q 013641 29 REPITRFKQYLRFNTAHPN--P--------NYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNS 98 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~--~--------~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~a 98 (439)
++++++|++|++|||++.. + ++.++++|+.++|+++|++++.+. ....++.+ +. +.++|+|+|
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~----~~~~~~~~-~~--~~~~l~l~g 74 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVD----NYAGYAEY-GQ--GEEYLGILG 74 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEec----CceEEEEe-CC--CCCeEEEEe
Confidence 5789999999999999721 1 246899999999999999987542 11122333 22 347999999
Q ss_pred ecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHH
Q 013641 99 HLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAK 178 (439)
Q Consensus 99 H~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 178 (439)
|+||||+++ .|+++||+++++ ||+|||||++||||++++++.|++.|+ +.+.+++++|.|+|++|||.|+ .|++.
T Consensus 75 H~D~Vp~~~-~W~~~Pf~~~~~--~g~lyGRGa~D~KG~laa~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~-~g~~~ 149 (447)
T TIGR01887 75 HLDVVPAGD-GWTSPPFEAEIK--DGRIYGRGTLDDKGPTIAALYAMKILK-ELGLKLKKKIRFIFGTDEETGW-ACIDY 149 (447)
T ss_pred ecCCCCCCC-CCcCCCCceEEE--CCEEEECCcccCcHHHHHHHHHHHHHH-HcCCCCCCcEEEEEECCcccCc-HhHHH
Confidence 999999975 799999999999 999999999999999999999999999 8888889999999999999997 89999
Q ss_pred HHhccccc------ccceEEEEec-C----------------------CcCCCCcc----eEEeecc-------------
Q 013641 179 FVESNEFR------ELNVGFVMDE-G----------------------QASTNDDF----RVFYADR------------- 212 (439)
Q Consensus 179 ~~~~~~~~------~~~~~~v~~~-g----------------------~~~p~~~~----~i~~~~~------------- 212 (439)
++++.... +.++.+++.+ | ..+|++.. ..+++.+
T Consensus 150 ~l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~ 229 (447)
T TIGR01887 150 YFEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFF 229 (447)
T ss_pred HHHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHh
Confidence 98753211 1111122211 0 01243211 1355555
Q ss_pred ------ceE-----EEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHH--ccccchhHHHHh-------cc----cc---
Q 013641 213 ------SPW-----HLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMIT--KFRESQFDVVKA-------GR----AA--- 264 (439)
Q Consensus 213 ------G~~-----~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~--~~~~~~~~~~~~-------~~----~~--- 264 (439)
|.. +++|+++|+++|++.|+.| |||..|++++..+. +.....++.+.. +. ..
T Consensus 230 ~~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 309 (447)
T TIGR01887 230 IAKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDD 309 (447)
T ss_pred hhcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCC
Confidence 666 7999999999999999999 99999999999986 221111111111 00 00
Q ss_pred CCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCC
Q 013641 265 NSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRP 344 (439)
Q Consensus 265 ~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p 344 (439)
....+|+|++.|++| .|+.|++++|+|++|.++.+++.+++.+.+. .. .+.... ....|
T Consensus 310 ~~~~~t~nvg~I~~g-----------~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~~----~~-~~~~~~-----~~~~p 368 (447)
T TIGR01887 310 VSGDLTMNVGVIDYE-----------NAEAGLIGLNVRYPVGNDPDTMLKNELAKES----GI-VEVTEN-----GYLKP 368 (447)
T ss_pred CcCCcEEEEEEEEEe-----------CCcEEEEEEEEecCCCCCHHHHHHHHHHHhh----Cc-EEEEEc-----cCCCC
Confidence 012368889889876 3789999999999999999988888765443 11 122211 12334
Q ss_pred ccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHhCCCEEEEccCC-CCCCCCCCCCCccchHhHHHHHHH
Q 013641 345 LMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMA-NTPILLHDHNEFLKDTVFLKGVEV 423 (439)
Q Consensus 345 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~-~~~~~~H~~nE~i~~~~l~~~~~~ 423 (439)
.+ .+.++++++.+.+++++.++..+.+....++||++++. +++.|||.. +...++|++||+++++++..++++
T Consensus 369 ~~--~~~~~~lv~~l~~~~~~~~g~~~~~~~~~ggtda~~~~----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~~~i 442 (447)
T TIGR01887 369 LY--VPKDDPLVQTLMKVYEKQTGDEGTPVAIGGGTYARLME----NGVAFGALFPGEEDTMHQANEYIMIDDLLLATAI 442 (447)
T ss_pred eE--ECCCCHHHHHHHHHHHHHhCCCCCeeEecchhhhhhCC----CcEEeCCCCCCCCCCccCCCcceeHHHHHHHHHH
Confidence 44 35678999999999999877654556677889988764 367899752 223469999999999999999999
Q ss_pred HHHHH
Q 013641 424 YESVI 428 (439)
Q Consensus 424 ~~~~l 428 (439)
|.+++
T Consensus 443 ~~~~~ 447 (447)
T TIGR01887 443 YAEAI 447 (447)
T ss_pred HHHhC
Confidence 98764
No 50
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=100.00 E-value=4.3e-45 Score=370.14 Aligned_cols=357 Identities=13% Similarity=0.162 Sum_probs=281.2
Q ss_pred CchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCC--CCCCcEEEeeeccccc
Q 013641 27 EEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSD--PSLPSILFNSHLDSVP 104 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~--~~~~~vll~aH~Dtvp 104 (439)
+.++++++|++|++|||+| ++|.++++||.++++++|++++.+ ..+|+++.++++. .+.|+|+|.|||||||
T Consensus 8 ~~~~~~~~l~~Lv~ips~S--~~e~~~~~~l~~~~~~~G~~~~~d----~~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~ 81 (485)
T PRK15026 8 SPQPLWDIFAKICSIPHPS--YHEEQLAEYIVGWAKEKGFHVERD----QVGNILIRKPATAGMENRKPVVLQAHLDMVP 81 (485)
T ss_pred CHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHhCCCEEEEE----ecCeEEEEEcCCCCCCCCCEEEEEeeecccC
Confidence 4678999999999999997 788899999999999999998876 3579999886431 2358999999999999
Q ss_pred CCC----CCCCCCCCceeEeCCCCEEEecCc---ccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHH
Q 013641 105 AEP----DKWSHPPFSAFHSPETGQIFARGS---QDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMA 177 (439)
Q Consensus 105 ~~~----~~w~~~Pf~~~~~~~dg~i~GrG~---~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 177 (439)
+++ .+|+.+||.+.++ ||++||||+ +|||++++++|.++ + +.+.. +++|.++|++|||.|+ .|++
T Consensus 82 ~~~~~~~~~w~~~P~~~~i~--~~~l~g~Gt~lgaD~k~gva~~l~~l---~-~~~~~-~~~i~~l~t~dEE~G~-~ga~ 153 (485)
T PRK15026 82 QKNNDTVHDFTKDPIQPYID--GEWVKARGTTLGADNGIGMASALAVL---A-DENVV-HGPLEVLLTMTEEAGM-DGAF 153 (485)
T ss_pred CCCCCccccCCCCCceEEEc--CCEEEeCCccccCccHHHHHHHHHHH---H-hCCCC-CCCEEEEEEcccccCc-HhHH
Confidence 975 2699999999888 999999999 59999999988776 4 44543 7899999999999997 8999
Q ss_pred HHHhcccccccceEEEEecCCcCCCCcceEEeec------------------cceEEEEEEEee-CCCCcCC-CCCC--c
Q 013641 178 KFVESNEFRELNVGFVMDEGQASTNDDFRVFYAD------------------RSPWHLIIRAKG-APGHGSR-MFDN--G 235 (439)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~------------------~G~~~~~v~v~G-~~~Hs~~-p~~g--n 235 (439)
.+.. ..+ ..++++++|. .....++.++ +|...++|+++| +++|||. |..| |
T Consensus 154 ~l~~-~~~-~~~~~i~~e~-----~~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~n 226 (485)
T PRK15026 154 GLQS-NWL-QADILINTDS-----EEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGN 226 (485)
T ss_pred Hhhh-ccC-CcCEEEEeCC-----CCCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCcc
Confidence 8865 322 4677888853 3234555555 466789999999 9999994 7766 9
Q ss_pred HHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHH
Q 013641 236 AMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRR 315 (439)
Q Consensus 236 ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~ 315 (439)
||..|++++..+.+ .+++++..++||+ +.|+||++|++.+++|....+..+.+.+.
T Consensus 227 Ai~~la~~l~~~~~------------------~~~~~v~~i~GG~------~~NaIp~~a~a~i~~~~~~~~~~~~~~~~ 282 (485)
T PRK15026 227 ANKLLVRFLAGHAE------------------ELDLRLIDFNGGT------LRNAIPREAFATIAVAADKVDALKSLVNT 282 (485)
T ss_pred HHHHHHHHHHHhHh------------------hCCeEEEEEeCCC------ccCCCCCCcEEEEEEChhHHHHHHHHHHH
Confidence 99999999998541 1568999999998 99999999999999998766666665555
Q ss_pred HHHHhcc----cCCCceEEEeecc--------------------------------------------------------
Q 013641 316 IAEEWAP----AIRNMSYEIIEKG-------------------------------------------------------- 335 (439)
Q Consensus 316 i~~~~~~----~~~~~~~~~~~~~-------------------------------------------------------- 335 (439)
+++.+.+ ..+++.++++...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gv~~~s~~~~g~v~~S~Nlg~v~~~~~~~~i~~ 362 (485)
T PRK15026 283 YQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHC 362 (485)
T ss_pred HHHHHHHHhcccCCCeEEEEEEccccccccCHHHHHHHHHHHHHCCcccEEeccCCCCeEEeeeEEEEEEEeCCEEEEEE
Confidence 5443331 1222333222111
Q ss_pred ----ccc----------------------cCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHHHh-
Q 013641 336 ----PIR----------------------DYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMRQL- 388 (439)
Q Consensus 336 ----~~~----------------------~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~~~- 388 (439)
++. ....+|++ ..++|+|+++.+.++++++++..+.+....+++|+++|.+.
T Consensus 363 ~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~~~~p~w-~~~~ds~lv~~l~~~y~e~~G~~~~~~~ihaglEcG~~~~~~ 441 (485)
T PRK15026 363 LIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGW-QPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPY 441 (485)
T ss_pred EecCCCchHHHHHHHHHHHHHHHcCcEEEEeCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEEehHHHHHhhC
Confidence 000 01234554 35678999999999999999887666778899999988854
Q ss_pred -CCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhh
Q 013641 389 -GIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLS 432 (439)
Q Consensus 389 -gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~ 432 (439)
++|++.|||... .+|+|||+++++++.+..+++..+|..+.
T Consensus 442 p~i~~VsfGP~~~---~~HspdE~v~I~s~~~~~~~l~~~l~~~~ 483 (485)
T PRK15026 442 PEMDMVSIGPTIT---GPHSPDEQVHIESVGHYWTLLTELLKEIP 483 (485)
T ss_pred CCCCEEEECCCCC---CCCCCCcEEEhHHHHHHHHHHHHHHHhhh
Confidence 899999999975 59999999999999998899888888873
No 51
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=100.00 E-value=4.1e-46 Score=373.48 Aligned_cols=358 Identities=18% Similarity=0.212 Sum_probs=274.2
Q ss_pred hhHHHHHHhHhcCcCCCC--------CCCCchHHHHHHHHHHhcCCc-eEEEEecCCccEEEEEEcCCCCC-CCcEEEee
Q 013641 29 REPITRFKQYLRFNTAHP--------NPNYTAPVSFLISQAQSIGLQ-FKTLEFVPNKPILLLTWPGSDPS-LPSILFNS 98 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~--------~~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nvi~~~~g~~~~-~~~vll~a 98 (439)
+++++.+.+|++|+|.|. +..+++.+++|+++|+++|++ ++.++ +.+||++.++|+.+. .|+|+|.|
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~---~~gnv~~~~~~~~~~~~~~i~~~a 79 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDE---KNGYVIATIPSNTDKDVPTIGFLA 79 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcC---CceEEEEEecCCCCCCCCEEEEEE
Confidence 688999999999999983 114558999999999999997 66652 378999999886431 38999999
Q ss_pred ecccccCCC-C-------------------------CCCCCCCce-----eEeCCCCEEEecCcccchhHHHHHHHHHHH
Q 013641 99 HLDSVPAEP-D-------------------------KWSHPPFSA-----FHSPETGQIFARGSQDDKCIAIQYIEAIRN 147 (439)
Q Consensus 99 H~Dtvp~~~-~-------------------------~w~~~Pf~~-----~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~ 147 (439)
|||||+... . .|.++||+. .+..+++.+|| +|||+++|++|.|++.
T Consensus 80 HmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G---~D~KgglAa~l~A~~~ 156 (410)
T TIGR01882 80 HVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLG---ADDKAGIAEIMTAADY 156 (410)
T ss_pred ecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeec---ccCHHHHHHHHHHHHH
Confidence 999998522 1 688899985 33223679999 7999999999999999
Q ss_pred HHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCC
Q 013641 148 LILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGH 227 (439)
Q Consensus 148 l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~H 227 (439)
|+ +.+..++++|.|+|+++||.|. |++.+..++ + ..+++++++ + +|++ .+.+..+|..+++|+++|+++|
T Consensus 157 L~-e~~~~~~g~I~~~ft~dEE~g~--Ga~~l~~~~-~-~~~~~~~i~-g--ep~g--~i~~~~~g~~~~~I~v~Gk~aH 226 (410)
T TIGR01882 157 LI-NHPEIKHGTIRVAFTPDEEIGR--GAHKFDVKD-F-NADFAYTVD-G--GPLG--ELEYETFSAAAAKITIQGNNVH 226 (410)
T ss_pred HH-hCCCCCCCCEEEEEECcccCCc--Ccchhhhhh-c-CccEEEEeC-C--CCCC--eEEEccccceEEEEEEEEEecC
Confidence 99 7533458899999999999864 888876543 2 356677776 3 4664 4666678999999999999999
Q ss_pred cCCC-CCC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCC
Q 013641 228 GSRM-FDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPP 305 (439)
Q Consensus 228 s~~p-~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~ 305 (439)
++.+ ..+ |||..+.+++..+....... .++-+.+.+++| ..|.+|++|++++++|+.+
T Consensus 227 a~~~~~~g~nAi~~a~~~~~~l~~~~~~~-------------~t~~~~g~i~~g-------~i~giPd~a~l~~diR~~~ 286 (410)
T TIGR01882 227 PGTAKGKMINAAQIAIDLHNLLPEDDRPE-------------YTEGREGFFHLL-------SIDGTVEEAKLHYIIRDFE 286 (410)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCcCCCc-------------cccceeEEEEEE-------eEEEecCEEEEEEEEecCC
Confidence 9986 456 99999988877665421100 011112345555 5567999999999999999
Q ss_pred CCCHHHHHHHHHHHhccc--CCC---ceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCc
Q 013641 306 TVDPDLIRRRIAEEWAPA--IRN---MSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTT 380 (439)
Q Consensus 306 ~~~~~~i~~~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~t 380 (439)
.++.+++.++|++.++.. ..+ +++++.. .+.++....++++++++.+.+++++.+... ......|+|
T Consensus 287 ~e~~e~i~~~i~~i~~~~~~~~g~~~v~~~~~~-------~~~~~~~~~~~~~~lv~~~~~a~~~~G~~~-~~~~~~ggt 358 (410)
T TIGR01882 287 KENFQERKELMKRIVEKMNNEYGQDRIKLDMND-------QYYNMAEKIEKVMEIVDIAKQAMENLGIEP-KISPIRGGT 358 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEEEEe-------eecChhhccCCCHHHHHHHHHHHHHhCCCC-cccccceec
Confidence 999999999999888752 222 3444332 122211235678899999999999865443 444567899
Q ss_pred cHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 381 DARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 381 D~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
|+++|...|+|++.|||+.. ++|++|||++++++.+++++|.+++..+++
T Consensus 359 Da~~~~~~Gip~~~~G~G~~---~aHt~dE~v~i~~l~~~~~~~~~li~~~~~ 408 (410)
T TIGR01882 359 DGSQLSYMGLPTPNIFAGGE---NMHGRFEYISVDNMVKAVDVIVEIAKLNEE 408 (410)
T ss_pred hHHHHHhCCCCCCeEcCCcc---cCcCCceEEEHHHHHHHHHHHHHHHHHHhh
Confidence 99999989999999999863 699999999999999999999999987764
No 52
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-44 Score=334.77 Aligned_cols=390 Identities=21% Similarity=0.337 Sum_probs=305.2
Q ss_pred CCCCchhHHHHHHhHhcCcCCCCCC----CCchHHHHHHHHHHhcCCceEEEEec----------CCccEEEEEEcCCCC
Q 013641 24 KSHEEREPITRFKQYLRFNTAHPNP----NYTAPVSFLISQAQSIGLQFKTLEFV----------PNKPILLLTWPGSDP 89 (439)
Q Consensus 24 ~~~~~~~~i~~l~~lv~ips~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~----------~~~~nvi~~~~g~~~ 89 (439)
.+.+.+++++.|+++|+|+|+|..+ ...++++|+++.++++|-.++..+.. +..|-|++++ |++|
T Consensus 11 id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~~-Gsdp 89 (473)
T KOG2276|consen 11 IDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGVL-GSDP 89 (473)
T ss_pred hhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhcc-cCCC
Confidence 4568899999999999999998543 35789999999999999777765532 1234556666 8899
Q ss_pred CCCcEEEeeecccccCC-CCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCc
Q 013641 90 SLPSILFNSHLDSVPAE-PDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDE 168 (439)
Q Consensus 90 ~~~~vll~aH~Dtvp~~-~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~E 168 (439)
++++|++|+|||++|+. +++|..+||+++++ ||++||||++|+||++++++.|+++++ +.|+.++.||+|+|.+.|
T Consensus 90 ~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~--~GkL~GRG~TDdkGPv~~wi~av~a~~-~~g~~lpvnv~f~~EgmE 166 (473)
T KOG2276|consen 90 SKKTVLVYGHLDVQPANLEDGWNTDPFTLTED--DGKLFGRGATDDKGPVLSWIHAVKALQ-QLGIDLPVNVVFVFEGME 166 (473)
T ss_pred CcceEEEEeeeeeeecCCCCCCcCCCeEEEEE--CCEEeccCcCCCCccchHHHHHHHHHH-HhCccccceEEEEEEech
Confidence 99999999999999998 58999999999999 999999999999999999999999999 999999999999999999
Q ss_pred ccCcccCHHHHHhcc---cccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEee--CCCCcCCCCCC---cHHHHH
Q 013641 169 EIGGFDGMAKFVESN---EFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKG--APGHGSRMFDN---GAMENL 240 (439)
Q Consensus 169 E~g~~~G~~~~~~~~---~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G--~~~Hs~~p~~g---nai~~~ 240 (439)
|+|+ -|...+++.. .+..+|+.|+- ...|--+..+++++|.+|...|.++|.| +..|||. ++| -|+..|
T Consensus 167 EsgS-~~L~~l~~~~kD~~~~~vD~vciS-dnyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGv-fGG~~hE~m~dL 243 (473)
T KOG2276|consen 167 ESGS-EGLDELIEKEKDKFFKDVDFVCIS-DNYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGV-FGGVVHEAMNDL 243 (473)
T ss_pred hccC-ccHHHHHHHHhhhhhccCCEEEee-CceeccCCCcccccccccceeEEEEEeeccccccccc-ccchhHHHHHHH
Confidence 9998 8888888643 45678855544 3455556678999999999999999999 5689986 444 678888
Q ss_pred HHHHHHHHccccc-----hhH--------------HHH-------h--c---ccc---------CCCceEeeEeEEeecc
Q 013641 241 MKSVEMITKFRES-----QFD--------------VVK-------A--G---RAA---------NSEVISVNLVYLKAGI 280 (439)
Q Consensus 241 ~~~i~~l~~~~~~-----~~~--------------~~~-------~--~---~~~---------~~~~~t~~~~~i~gg~ 280 (439)
..++..|.+.... .++ .+. . + ... ....+++.+++|.|..
T Consensus 244 ~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihgIeGaF 323 (473)
T KOG2276|consen 244 VLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHGIEGAF 323 (473)
T ss_pred HHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceeccccee
Confidence 8888877643211 111 110 0 0 000 1235788899998766
Q ss_pred cCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcc----c--CCCceEEEeeccccccCCCCCccccCCCCCh
Q 013641 281 PSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAP----A--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNP 354 (439)
Q Consensus 281 ~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~----~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 354 (439)
..+ ++..+||.++.-+|.+|++|.++.+.+.+.+.+++.+ . ...+++++. +.+.||. .+++++
T Consensus 324 s~p--G~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~N~l~~~~~-------~~~~~Wv--~d~~~~ 392 (473)
T KOG2276|consen 324 SGP--GAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKLKVSMG-------HAGAPWV--SDPDDP 392 (473)
T ss_pred eCC--CceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEeec-------CCCCcee--cCCCch
Confidence 433 3788999999999999999999999999888877764 1 234455544 4677776 467899
Q ss_pred HHHHHHHHHHHhCCCCCccccccCCcc--HHHHHH-hCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHh
Q 013641 355 WWSVFKRAVTSAGGKLGKPEILASTTD--ARYMRQ-LGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSL 431 (439)
Q Consensus 355 ~~~~l~~a~~~~~~~~~~~~~~~~~tD--~~~~~~-~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~ 431 (439)
.+.+++++++.+++..|. ....|||- ...|+. .|.+++...-|. ..+++|+.||.+++.++..+.+++++++.++
T Consensus 393 ~y~a~krA~~~v~gvePd-~~ReGgSIPvt~tfQ~~~~~~V~llP~G~-~dD~aHsqNEkl~i~N~~~G~k~l~ay~~el 470 (473)
T KOG2276|consen 393 HYLALKRAIETVYGVEPD-FTREGGSIPVTLTFQDITGKSVLLLPYGA-SDDGAHSQNEKLNITNYVEGTKVLAAYISEL 470 (473)
T ss_pred hHHHHHHHHHHhhCCCCC-ccccCCccceehHHHHHhCCCeEEecccc-cccchhhhcccccHHHHhhhHHHHHHHHHHH
Confidence 999999999999988633 33335554 345555 488888654442 2358999999999999999999999999988
Q ss_pred hc
Q 013641 432 SS 433 (439)
Q Consensus 432 ~~ 433 (439)
++
T Consensus 471 ~~ 472 (473)
T KOG2276|consen 471 AQ 472 (473)
T ss_pred hc
Confidence 64
No 53
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=9.3e-44 Score=351.62 Aligned_cols=346 Identities=17% Similarity=0.186 Sum_probs=267.0
Q ss_pred HHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccCCCCCCC
Q 013641 32 ITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPAEPDKWS 111 (439)
Q Consensus 32 i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~~~w~ 111 (439)
.+++++|++|||+| ++|.++++||.++|+++|+++++.. ++..||++++++..+ +|+|+|+|||||||+++ |.
T Consensus 2 ~~~~~~L~~ips~s--~~E~~~a~~l~~~l~~~g~~~~~~~--~~~~~vva~~~~~~~-~~~i~l~gH~DtVp~~~--~~ 74 (363)
T TIGR01891 2 TDIRRHLHEHPELS--FEEFKTSSLIAEALESLGIEVRRGV--GGATGVVATIGGGKP-GPVVALRADMDALPIQE--QT 74 (363)
T ss_pred hHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCceEecC--CCCcEEEEEEeCCCC-CCEEEEEeccCCCCccc--cc
Confidence 57899999999998 7899999999999999999987632 256899999976433 48999999999999864 66
Q ss_pred CCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccceE
Q 013641 112 HPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVG 191 (439)
Q Consensus 112 ~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~ 191 (439)
.+||.+. + ||++||||+ | ++++++|.|++.|+ +.+..++++|.|+|++|||.+ .|++.+++++.+++.|.+
T Consensus 75 ~~pf~~~-~--~g~l~g~G~-~--~~~a~~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~d~~ 145 (363)
T TIGR01891 75 DLPYKST-N--PGVMHACGH-D--LHTAILLGTAKLLK-KLADLLEGTVRLIFQPAEEGG--GGATKMIEDGVLDDVDAI 145 (363)
T ss_pred CCCcccC-C--CCceecCcC-H--HHHHHHHHHHHHHH-hchhhCCceEEEEEeecCcCc--chHHHHHHCCCCCCcCEE
Confidence 7999875 5 899999997 4 78899999999998 766667899999999999985 599999987766667777
Q ss_pred EEEecCCcCCCCcc--eEEeeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCc
Q 013641 192 FVMDEGQASTNDDF--RVFYADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEV 268 (439)
Q Consensus 192 ~v~~~g~~~p~~~~--~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 268 (439)
++++.....+.+.. ....+.+|..+++++++|+++|++.|+.+ ||+..|++++++|+++.....+ ....
T Consensus 146 i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~--------~~~~ 217 (363)
T TIGR01891 146 LGLHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVD--------PSRP 217 (363)
T ss_pred EEECCCCCCCCeEEEECCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCC--------CCCC
Confidence 77643211222111 12235578889999999999999989888 9999999999999865321100 0123
Q ss_pred eEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCcc
Q 013641 269 ISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLM 346 (439)
Q Consensus 269 ~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~ 346 (439)
.+++++.++||. ..|+||++|++++|+|+.|.++.+++.++|++.++.. ..+++++++.. ..+|+.
T Consensus 218 ~~~~i~~i~gG~------~~nvvP~~~~~~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~~------~~~p~~ 285 (363)
T TIGR01891 218 AVVTVGIIEAGG------APNVIPDKASMSGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVELNYD------RGLPAV 285 (363)
T ss_pred cEEEEEEEEcCC------CCcEECCeeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe------cCCCCc
Confidence 689999999887 8999999999999999999999999999999888642 23566666642 234443
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCC---CccccccCCccHHHHHHhCCCEE-EEccCCCCC----CCCCCCCCccchHhH
Q 013641 347 TLTDDSNPWWSVFKRAVTSAGGKL---GKPEILASTTDARYMRQLGIPVL-GFSPMANTP----ILLHDHNEFLKDTVF 417 (439)
Q Consensus 347 ~~~~~~~~~~~~l~~a~~~~~~~~---~~~~~~~~~tD~~~~~~~gip~v-~~Gp~~~~~----~~~H~~nE~i~~~~l 417 (439)
..++++++.+++++++..+.. ..+....|++|++++.+. +|++ .|.|....+ ...|+++...+.+-|
T Consensus 286 ---~~~~~l~~~l~~a~~~~~g~~~~~~~~~~~~gg~Da~~~~~~-~P~~~~f~~~~~~~~~~~~~~h~~~~~~~~~~~ 360 (363)
T TIGR01891 286 ---TNDPALTQILKEVARHVVGPENVAEDPEVTMGSEDFAYYSQK-VPGAFFFLGIGNEGTGLSHPLHHPRFDIDEEAL 360 (363)
T ss_pred ---cCCHHHHHHHHHHHHHhcCccceeccCCCCccccCHHHHHHh-CCeeEEEEecCCCCCCCCCCCCCCCCcCChHHh
Confidence 346799999999999976532 123457799999999975 8886 566765322 367887766665544
No 54
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=2e-43 Score=355.32 Aligned_cols=350 Identities=17% Similarity=0.147 Sum_probs=270.1
Q ss_pred CCCchhHHHHHHhHhcCcC-------CCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEe
Q 013641 25 SHEEREPITRFKQYLRFNT-------AHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFN 97 (439)
Q Consensus 25 ~~~~~~~i~~l~~lv~ips-------~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~ 97 (439)
+.+.++++++|++|++|+| +|.+++|.++++||.++|+++|++++++ +.+|++++++|.+++ |+|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~----~~~nl~a~~~g~~~~-~~l~l~ 80 (412)
T PRK12892 6 RIDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID----GIGNVFGRLPGPGPG-PALLVG 80 (412)
T ss_pred cccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEecCCCCC-CeEEEE
Confidence 3456789999999999998 4445678999999999999999998865 567999999886554 899999
Q ss_pred eecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC----cc
Q 013641 98 SHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG----GF 173 (439)
Q Consensus 98 aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g----~~ 173 (439)
||+||||+++ | + |+|+|++++|.|++.|+ +.+.+++++|.|++++|||.+ +.
T Consensus 81 gH~DtVp~~g--~---------------~------dg~~Gvaa~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~~~~~~~~ 136 (412)
T PRK12892 81 SHLDSQNLGG--R---------------Y------DGALGVVAGLEAARALN-EHGIATRHPLDVVAWCDEEGSRFTPGF 136 (412)
T ss_pred ccccCCCCCC--c---------------c------cchHHHHHHHHHHHHHH-HcCCCCCCCeEEEEecCcccccccCcc
Confidence 9999999742 3 2 55689999999999999 888889999999999999984 44
Q ss_pred cCHHHHHhccccc-----------------------ccceEEE-------------EecCC-cCCCC-cceEEeeccceE
Q 013641 174 DGMAKFVESNEFR-----------------------ELNVGFV-------------MDEGQ-ASTND-DFRVFYADRSPW 215 (439)
Q Consensus 174 ~G~~~~~~~~~~~-----------------------~~~~~~v-------------~~~g~-~~p~~-~~~i~~~~~G~~ 215 (439)
.|+++++++.... ..|.+++ ++.|. .+|++ ...++++++|..
T Consensus 137 ~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~ 216 (412)
T PRK12892 137 LGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIW 216 (412)
T ss_pred ccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEeccce
Confidence 7999888531000 0011111 11110 01111 146899999999
Q ss_pred EEEEEEeeCCCCcCC-CC-CC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeec-ccCCCCcccccc
Q 013641 216 HLIIRAKGAPGHGSR-MF-DN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAG-IPSPTGFVMNMQ 291 (439)
Q Consensus 216 ~~~v~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg-~~~~~g~~~n~i 291 (439)
+++|+++|+++|++. |. .+ |||..+++++++|+++... . . ...+++++.+++| . ..|+|
T Consensus 217 ~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~----~------~-~~~~~~vg~i~gg~~------~~NvI 279 (412)
T PRK12892 217 QYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPR----V------C-GPAVVTVGRVALDPG------SPSII 279 (412)
T ss_pred EEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh----c------C-CCcEEEEEEEEecCC------CCeEE
Confidence 999999999999876 64 56 9999999999999864211 0 0 1268899999976 4 89999
Q ss_pred cCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCC
Q 013641 292 PSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGK 369 (439)
Q Consensus 292 P~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~ 369 (439)
|++|++++|+|++|.++.+++.++|++.++.. ..++++++... ..+|+. ..|+++++.+.+++++. +.
T Consensus 280 P~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~~~------~~~~~~---~~d~~lv~~~~~a~~~~-g~ 349 (412)
T PRK12892 280 PGRVEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVDRI------AEYAPA---PCDAALVDALRAAAEAA-GG 349 (412)
T ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE------ecCCCc---CCCHHHHHHHHHHHHHc-CC
Confidence 99999999999999999999999999888742 34556665532 233333 34679999999999984 43
Q ss_pred CCccccccCCccHHHHHHhCCCE-EEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 370 LGKPEILASTTDARYMRQLGIPV-LGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 370 ~~~~~~~~~~tD~~~~~~~gip~-v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
.+.+....+++|+++|.+. +|+ +.|||+... .+|++||+++++++.+++++|+.++..+++
T Consensus 350 ~~~~~~~~g~tDa~~~~~~-ip~~~~~gp~~~~--~~H~~~E~v~i~~l~~~~~il~~~l~~~~~ 411 (412)
T PRK12892 350 PYLEMPSGAGHDAQNMARI-APSAMLFVPSKGG--ISHNPAEDTSPADLAQGARVLADTLRRLAR 411 (412)
T ss_pred CccccCcchHHHHHHHHhH-CCEEEEEeccCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3234556789999999877 775 579998643 699999999999999999999999988764
No 55
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.3e-42 Score=349.26 Aligned_cols=350 Identities=15% Similarity=0.164 Sum_probs=268.8
Q ss_pred CchhHHHHHHhHhcCcCCCC--------CCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEee
Q 013641 27 EEREPITRFKQYLRFNTAHP--------NPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNS 98 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~--------~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~a 98 (439)
+.++++++|++|++|+|.++ +++|.++++||+++|+++|++++++ ..+|++++++|.++..|+|+|.|
T Consensus 8 ~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~----~~~n~~a~~~g~~~~~~~l~l~~ 83 (412)
T PRK12893 8 NGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD----AIGNLFGRRAGTDPDAPPVLIGS 83 (412)
T ss_pred CHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEeCCCCCCCCEEEEEe
Confidence 46789999999999998642 2347899999999999999998764 45699999987543358999999
Q ss_pred ecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC----ccc
Q 013641 99 HLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG----GFD 174 (439)
Q Consensus 99 H~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g----~~~ 174 (439)
|+||||.++ ..|+|++++++|.|++.|+ +.+..++++|.|+|++|||.| +..
T Consensus 84 H~DtVp~~g-----------------------~~dgk~gvaa~l~a~~~l~-~~~~~~~~~v~~~~~~dEE~g~~~~~~~ 139 (412)
T PRK12893 84 HLDTQPTGG-----------------------RFDGALGVLAALEVVRTLN-DAGIRTRRPIEVVSWTNEEGARFAPAML 139 (412)
T ss_pred cccCCCCCC-----------------------cccchhhHHHHHHHHHHHH-HcCCCCCCCeEEEEEccccccccccccc
Confidence 999999742 1366899999999999999 888788999999999999986 226
Q ss_pred CHHHHHhcccc-------c------------------------ccceEEEEe--cCCc---CCCCcceEEeeccceEEEE
Q 013641 175 GMAKFVESNEF-------R------------------------ELNVGFVMD--EGQA---STNDDFRVFYADRSPWHLI 218 (439)
Q Consensus 175 G~~~~~~~~~~-------~------------------------~~~~~~v~~--~g~~---~p~~~~~i~~~~~G~~~~~ 218 (439)
|++.+.+.... . +.+..+-+. .|.. .+. ...++++++|..+++
T Consensus 140 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~kG~~~~~ 218 (412)
T PRK12893 140 GSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGL-PIGVVTGIQGIRWLE 218 (412)
T ss_pred cHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCC-cEEEEeeecccEEEE
Confidence 88877743210 0 011111111 0100 111 357899999999999
Q ss_pred EEEeeCCCCcCC-CC-CC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeec-ccCCCCcccccccCc
Q 013641 219 IRAKGAPGHGSR-MF-DN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAG-IPSPTGFVMNMQPSE 294 (439)
Q Consensus 219 v~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg-~~~~~g~~~n~iP~~ 294 (439)
|+++|+++|++. |+ .| |||..|++++++|+++... . ....+++++.+++| . ..|+||++
T Consensus 219 i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~----~-------~~~~~~~vg~i~ggg~------~~NvVP~~ 281 (412)
T PRK12893 219 VTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA----L-------APDGVATVGRLRVEPN------SRNVIPGK 281 (412)
T ss_pred EEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh----c-------CCCceEEEEEEEeeCC------CceEECCe
Confidence 999999999986 74 67 9999999999999875321 0 11357889999874 4 89999999
Q ss_pred eEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCc
Q 013641 295 AEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGK 372 (439)
Q Consensus 295 ~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 372 (439)
|++++|+|++|.++.+++.++|++.+++. ..++++++... ..+|+. ..++++++.+.+++++.+... .
T Consensus 282 a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~~~------~~~~~~---~~d~~l~~~l~~~~~~~g~~~-~ 351 (412)
T PRK12893 282 VVFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVETV------WDFPPV---PFDPALVALVEAAAEALGLSH-M 351 (412)
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE------ecCCCc---CCCHHHHHHHHHHHHHcCCCc-c
Confidence 99999999999999999999999888752 24556665531 123332 346789999999998764332 3
Q ss_pred cccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhcc
Q 013641 373 PEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSSF 434 (439)
Q Consensus 373 ~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~ 434 (439)
+....++||+++|...+.+++.|||+... .+|++||++++++|.+++++|++++..+++.
T Consensus 352 ~~~~~g~tD~~~~~~~~p~~v~~gp~~~~--~~Hs~dE~v~i~~l~~~~~i~~~ll~~~~~~ 411 (412)
T PRK12893 352 RMVSGAGHDAMFLARVAPAAMIFVPCRGG--ISHNEAEDTEPADLAAGANVLLHAVLELAGR 411 (412)
T ss_pred ccCCccHHHHHHHHhhCCEEEEEeecCCC--CCCCccccCCHHHHHHHHHHHHHHHHHhhcc
Confidence 44566889999998765446889998543 6899999999999999999999999988754
No 56
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=6.7e-43 Score=351.11 Aligned_cols=349 Identities=17% Similarity=0.195 Sum_probs=267.5
Q ss_pred CCchhHHHHHHhHhcC-cCC-------CCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEe
Q 013641 26 HEEREPITRFKQYLRF-NTA-------HPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFN 97 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~i-ps~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~ 97 (439)
.+.+.+++.+++|++| +.. |.+++|.++++||+++|+++|+++++. ..+||+++++|..+..|+|+|.
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~----~~~nl~a~~~g~~~~~~~l~l~ 79 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD----AVGNLFGRLEGRDPDAPAVLTG 79 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEecCCCCCCCEEEEe
Confidence 4568899999999999 422 223568999999999999999998864 4679999997643234899999
Q ss_pred eecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC----cc
Q 013641 98 SHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG----GF 173 (439)
Q Consensus 98 aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g----~~ 173 (439)
||+||||+++ ..|+|+++|+++.|+++|+ +.+.+++++|.|++++|||.| +.
T Consensus 80 gH~DtVp~~g-----------------------~~d~k~g~aa~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~g~~g~~~ 135 (413)
T PRK09290 80 SHLDTVPNGG-----------------------RFDGPLGVLAGLEAVRTLN-ERGIRPRRPIEVVAFTNEEGSRFGPAM 135 (413)
T ss_pred cCccCCCCCC-----------------------CcCCHHHHHHHHHHHHHHH-HcCCCCCCCeEEEEEcCCccccccCcc
Confidence 9999999742 2388999999999999999 888888899999999999984 23
Q ss_pred cCHHHHHhcc-----------------------cccccceEEEE---------------ecC-CcCCCC-cceEEeeccc
Q 013641 174 DGMAKFVESN-----------------------EFRELNVGFVM---------------DEG-QASTND-DFRVFYADRS 213 (439)
Q Consensus 174 ~G~~~~~~~~-----------------------~~~~~~~~~v~---------------~~g-~~~p~~-~~~i~~~~~G 213 (439)
.|++.+++.. .++ .|++++. +.| ..+|+. ...++++++|
T Consensus 136 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG 214 (413)
T PRK09290 136 LGSRVFTGALTPEDALALRDADGVSFAEALAAIGYD-GDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVG 214 (413)
T ss_pred ccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCC-hhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEeeeec
Confidence 6888776431 011 2221110 000 002222 2468999999
Q ss_pred eEEEEEEEeeCCCCcC-CC-CCC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeec-ccCCCCcccc
Q 013641 214 PWHLIIRAKGAPGHGS-RM-FDN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAG-IPSPTGFVMN 289 (439)
Q Consensus 214 ~~~~~v~v~G~~~Hs~-~p-~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg-~~~~~g~~~n 289 (439)
..+++|+++|+++|++ .| ..| |||..+++++++|+++... . ....+++++.+.+| . +.|
T Consensus 215 ~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~----~-------~~~~~~~~g~i~~g~~------~~N 277 (413)
T PRK09290 215 QRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAA----H-------GPDLVATVGRLEVKPN------SVN 277 (413)
T ss_pred cEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHh----c-------CCCeEEEEEEEEEcCC------CCe
Confidence 9999999999999988 58 467 9999999999999765311 0 01257888999865 3 889
Q ss_pred cccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhC
Q 013641 290 MQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAG 367 (439)
Q Consensus 290 ~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~ 367 (439)
+||++|++++|+|+.|.++.+++.++|++.+++. ..++++++... ..+|+. ..++++++.+.+++++.+
T Consensus 278 vIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~~------~~~~~~---~~d~~lv~~l~~a~~~~g 348 (413)
T PRK09290 278 VIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIELI------SRRPPV---PFDPGLVAALEEAAERLG 348 (413)
T ss_pred EECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE------ecCCCc---cCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999888742 23555555532 234443 346899999999998864
Q ss_pred CCCCccccccCCccHHHHHHhCCCE-EEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 368 GKLGKPEILASTTDARYMRQLGIPV-LGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 368 ~~~~~~~~~~~~tD~~~~~~~gip~-v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
..+.+....+++|+++|.. ++|+ +.|||+... .+|++||+++++++.+++++|++++..+++
T Consensus 349 -~~~~~~~~~g~tDa~~~~~-~iP~~~~~gp~~~~--~~H~~dE~v~i~~l~~~~~v~~~~l~~l~~ 411 (413)
T PRK09290 349 -LSYRRLPSGAGHDAQILAA-VVPTAMIFVPSVGG--ISHNPAEFTSPEDCAAGANVLLHALLELAE 411 (413)
T ss_pred -CCccccCCccchHHHHHhc-cCCEEEEEeccCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 3323445678999999964 7998 568887543 689999999999999999999999998875
No 57
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=1.8e-42 Score=347.87 Aligned_cols=351 Identities=15% Similarity=0.172 Sum_probs=268.6
Q ss_pred CCchhHHHHHHhHhcCcC-C-------CCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEe
Q 013641 26 HEEREPITRFKQYLRFNT-A-------HPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFN 97 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips-~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~ 97 (439)
.+.+++++.+.+|-+|.+ + +.+++|.++++||+++|+++|++++.+ ..+||+++++|.++++|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~----~~gNl~a~~~g~~~~~~~l~~~ 82 (414)
T PRK12891 7 VDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD----AMGNLFARRAGRDPDAAPVMTG 82 (414)
T ss_pred cCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC----CCCCEEEEecCCCCCCCeEEEE
Confidence 444589999999999842 2 124568999999999999999998876 4679999998865446899999
Q ss_pred eecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc----c
Q 013641 98 SHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG----F 173 (439)
Q Consensus 98 aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~----~ 173 (439)
|||||||++ |..|||+|++++|.|++.|+ +.+.+++++|.|++++|||.|+ .
T Consensus 83 ~H~DtVp~g-----------------------g~~D~k~Gv~a~l~a~~~l~-~~~~~~~~~i~v~~~~dEE~~~f~~~~ 138 (414)
T PRK12891 83 SHADSQPTG-----------------------GRYDGIYGVLGGLEVVRALN-DAGIETERPVDVVIWTNEEGSRFAPSM 138 (414)
T ss_pred ecccCCCCC-----------------------ccccchhhHHHHHHHHHHHH-HcCCCCCCCeEEEEecccccCcCCccc
Confidence 999999975 23499999999999999999 9999999999999999999863 1
Q ss_pred cCHHHH------------------------Hhccccc-------ccceEEEE--ecCCc-CCCC-cceEEeeccceEEEE
Q 013641 174 DGMAKF------------------------VESNEFR-------ELNVGFVM--DEGQA-STND-DFRVFYADRSPWHLI 218 (439)
Q Consensus 174 ~G~~~~------------------------~~~~~~~-------~~~~~~v~--~~g~~-~p~~-~~~i~~~~~G~~~~~ 218 (439)
.|++.+ .+.+... +.+..+.+ +.|.. ++++ ...++.+++|..+++
T Consensus 139 ~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~ 218 (414)
T PRK12891 139 VGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYE 218 (414)
T ss_pred ccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEE
Confidence 366533 2222110 01112222 11100 1111 247999999999999
Q ss_pred EEEeeCCCCcC-CCC-CC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeec-ccCCCCcccccccCc
Q 013641 219 IRAKGAPGHGS-RMF-DN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAG-IPSPTGFVMNMQPSE 294 (439)
Q Consensus 219 v~v~G~~~Hs~-~p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg-~~~~~g~~~n~iP~~ 294 (439)
|+++|+++|++ .|. .+ |||..++++++.|+++... . ....+++++.|+|| . +.|+||++
T Consensus 219 v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~----~-------~~~~t~~vg~I~gG~~------~~NvVP~~ 281 (414)
T PRK12891 219 VTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRR----D-------APDARATVGMIDARPN------SRNTVPGE 281 (414)
T ss_pred EEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh----c-------CCCeEEEEEEEEeeCC------CcceECCe
Confidence 99999999998 475 46 9999999999999875221 0 02368999999986 4 88999999
Q ss_pred eEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCc
Q 013641 295 AEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGK 372 (439)
Q Consensus 295 ~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~ 372 (439)
|++++|+|+.|.++.+++.++|++.++.. ..++++++... ...|+. ..++++++.+.++++..+... .
T Consensus 282 ~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~d~~lv~~l~~a~~~~G~~~-~ 351 (414)
T PRK12891 282 CFFTVEFRHPDDAVLDRLDAALRAELARIADETGLRADIEQI------FGYAPA---PFAPGCIDAVRDAARALGLSH-M 351 (414)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEE------ecCCCc---CCCHHHHHHHHHHHHHcCCCc-e
Confidence 99999999999999999999999888642 34566665542 233333 346799999999997754332 3
Q ss_pred cccccCCccHHHHHHhCCCE-EEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhcc
Q 013641 373 PEILASTTDARYMRQLGIPV-LGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSSF 434 (439)
Q Consensus 373 ~~~~~~~tD~~~~~~~gip~-v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~~ 434 (439)
+....+++|++++.. ++|+ +.|||+... .+|++||++++++|..++++|+.++..+++.
T Consensus 352 ~~~~~ggtDa~~~~~-giPt~~~~gp~~~~--~aH~~dE~v~i~~l~~~~~il~~~l~~~~~~ 411 (414)
T PRK12891 352 DIVSGAGHDACFAAR-GAPTGMIFVPCVDG--LSHNEAEAITPEWFAAGADVLLRAVLQSAQE 411 (414)
T ss_pred ecCCcchHHHHHHHh-hCCEEEEEEcCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 345678999888754 8998 678998653 6899999999999999999999999998754
No 58
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=100.00 E-value=4.5e-42 Score=345.36 Aligned_cols=348 Identities=16% Similarity=0.179 Sum_probs=267.4
Q ss_pred CchhHHHHHHhHhcCcCC-------CCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeee
Q 013641 27 EEREPITRFKQYLRFNTA-------HPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSH 99 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH 99 (439)
+.+++++.+.+|.+||.. |.+++|.++++||+++|+++|++++++ ..+||+++++|..+++|+|+|+||
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~----~~~nlia~~~g~~~~~~~l~~~~H 82 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD----AAGNLFGRLPGRDPDLPPLMTGSH 82 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc----CCCcEEEEeCCCCCCCCEEEEeCc
Confidence 457899999999998822 223679999999999999999999875 467999999875444589999999
Q ss_pred cccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc----ccC
Q 013641 100 LDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG----FDG 175 (439)
Q Consensus 100 ~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~----~~G 175 (439)
|||||++ |..|||++++++|.|++.|+ +.+..++++|.|++++|||.|+ ..|
T Consensus 83 ~DtVp~~-----------------------g~~D~~~g~aa~l~a~~~l~-~~~~~~~~~i~~~~~~dEE~~~~~~~~~G 138 (414)
T PRK12890 83 LDTVPNG-----------------------GRYDGILGVLAGLEVVAALR-EAGIRPPHPLEVIAFTNEEGVRFGPSMIG 138 (414)
T ss_pred ccCCCCC-----------------------CCcCCHHHHHHHHHHHHHHH-HcCCCCCCCeEEEEEecccccccCCcccc
Confidence 9999974 34599999999999999999 8887889999999999999742 257
Q ss_pred HHHHHhccc-----------------------ccccceEEE--E-------------ecCCc---CCCCcceEEeeccce
Q 013641 176 MAKFVESNE-----------------------FRELNVGFV--M-------------DEGQA---STNDDFRVFYADRSP 214 (439)
Q Consensus 176 ~~~~~~~~~-----------------------~~~~~~~~v--~-------------~~g~~---~p~~~~~i~~~~~G~ 214 (439)
++++..... + ..+...+ . ..|.. .++ ...++.+++|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~-~~~i~~~~kG~ 216 (414)
T PRK12890 139 SRALAGTLDVEAVLATRDDDGTTLAEALRRIGG-DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGL-PIGVVTAIQGI 216 (414)
T ss_pred HHHHHcccChHHHHhccCCCCCCHHHHHHHcCC-ChhhccccccCCCCccEEEEEeeCcCHHHHhCCC-ceEEEEeecCc
Confidence 766643211 0 0111111 0 00000 112 25688999999
Q ss_pred EEEEEEEeeCCCCcCC-CC-CC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeec-ccCCCCccccc
Q 013641 215 WHLIIRAKGAPGHGSR-MF-DN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAG-IPSPTGFVMNM 290 (439)
Q Consensus 215 ~~~~v~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg-~~~~~g~~~n~ 290 (439)
.+++|+++|+++|++. |+ .+ |||..+++++.+|+++... .. ...+++++.+++| . +.|+
T Consensus 217 ~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~----~~-------~~~~~~~g~i~~gg~------~~Nv 279 (414)
T PRK12890 217 RRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARA----LL-------HDLVATVGRLDVEPN------AINV 279 (414)
T ss_pred EEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHh----cC-------CCeEEEEEEEEECCC------CceE
Confidence 9999999999999985 84 55 9999999999999875311 00 2257889999874 4 8999
Q ss_pred ccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCC
Q 013641 291 QPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGG 368 (439)
Q Consensus 291 iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~ 368 (439)
||++|++++|+|+.|.++.+++.++|++.+++. ..++++++... ..+|+. ..++++++.+.+++++.+
T Consensus 280 IP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~l~~~l~~~~~~~g- 349 (414)
T PRK12890 280 VPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELERL------SRSEPV---PCDPALVDAVEAAAARLG- 349 (414)
T ss_pred ECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe------ecCCCc---CCCHHHHHHHHHHHHHcC-
Confidence 999999999999999999999999998887642 23555665531 233333 346799999999998864
Q ss_pred CCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 369 KLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 369 ~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
..+......++||+++|.+.+.+++.|||+... .+|++||+++++++.+++++|++++..+++
T Consensus 350 ~~~~~~~~~g~tDa~~~~~~gp~~~~~gp~~~~--~aHs~dE~v~i~~l~~~~~i~~~ll~~l~~ 412 (414)
T PRK12890 350 YPSRRMPSGAGHDAAAIARIGPSAMIFVPCRGG--ISHNPEEAMDPEDLAAGARVLLDAVLRLDR 412 (414)
T ss_pred CCceecCCcccHHHHHHHhhCCEEEEEecCCCC--CCCCcCccCCHHHHHHHHHHHHHHHHHHhh
Confidence 332334466899999999888666688998643 699999999999999999999999998865
No 59
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=100.00 E-value=4.1e-41 Score=336.77 Aligned_cols=346 Identities=14% Similarity=0.136 Sum_probs=261.5
Q ss_pred hHHHHHHhHhcCcC-C-------CCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecc
Q 013641 30 EPITRFKQYLRFNT-A-------HPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLD 101 (439)
Q Consensus 30 ~~i~~l~~lv~ips-~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~D 101 (439)
++++.+..+-+|-+ + +.+++|.++++||+++|+++|++++.+ ..+||+++++|+.++.|+|+|+||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~----~~~nl~a~~~g~~~~~~~l~~~~H~D 77 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFD----EVGNLIGRKEGTEPPLEVVLSGSHID 77 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEe----cCCcEEEEecCCCCCCCEEEEecccc
Confidence 45666777766622 1 224678999999999999999999876 45799999988654458999999999
Q ss_pred cccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC----cccCHH
Q 013641 102 SVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG----GFDGMA 177 (439)
Q Consensus 102 tvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g----~~~G~~ 177 (439)
|||.++ + .|++.|++++|.+++.|+ +.+.+++++|.|+++.|||.+ +..|++
T Consensus 78 tV~~gg-----------------~------~dg~~gvaa~l~a~~~l~-~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~ 133 (401)
T TIGR01879 78 TVVNGG-----------------N------FDGQLGVLAGIEVVDALK-EAYVVPLHPIEVVAFTEEEGSRFPYGMWGSR 133 (401)
T ss_pred cCCCCC-----------------c------cCCHHHHHHHHHHHHHHH-HcCCCCCCCeEEEEEeCCcCcCcccccccHH
Confidence 999742 1 255679999999999999 989899999999999999973 337888
Q ss_pred HHHhcccccc--------------------cceEEE---------------EecCCc-C-CCCcceEEeeccceEEEEEE
Q 013641 178 KFVESNEFRE--------------------LNVGFV---------------MDEGQA-S-TNDDFRVFYADRSPWHLIIR 220 (439)
Q Consensus 178 ~~~~~~~~~~--------------------~~~~~v---------------~~~g~~-~-p~~~~~i~~~~~G~~~~~v~ 220 (439)
.+........ .+..++ +..|.. + ......++.+++|..+++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~ 213 (401)
T TIGR01879 134 NMVGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPRGDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVT 213 (401)
T ss_pred HHhcccchhHHHhCcCCCCCCHHHHHHHcCCCcccccccccccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEE
Confidence 8864220000 011110 001100 0 00125789999999999999
Q ss_pred EeeCCCCcCC-CC-CC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEE
Q 013641 221 AKGAPGHGSR-MF-DN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEA 297 (439)
Q Consensus 221 v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~ 297 (439)
++|+++|++. |. .+ |||..+++++.+|+++.... ....+.+++.+++|. .+.|+||++|++
T Consensus 214 v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-----------~~~~~~~vg~i~~g~-----~~~NvVP~~a~~ 277 (401)
T TIGR01879 214 LNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-----------GDPTVGTVGKVEARP-----NGVNVIPGKVTF 277 (401)
T ss_pred EEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEEEecC-----CceEEECCEEEE
Confidence 9999999986 53 46 99999999999998753210 011467889998752 178999999999
Q ss_pred EEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCcccc
Q 013641 298 GFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEI 375 (439)
Q Consensus 298 ~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ 375 (439)
.+|+|+.|.++.+++.++|++.+++. ..+++++++.. ...|+. ..|+++++.+.+++++.+... ....
T Consensus 278 ~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~d~~lv~~l~~a~~~~g~~~-~~~~ 347 (401)
T TIGR01879 278 TLDLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIERW------MDEEPV---PCSEELVAALTELCERLGYNA-RVMV 347 (401)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEEEe------ecCCCc---CCCHHHHHHHHHHHHHcCCCc-cccc
Confidence 99999999999999999999888642 34555665532 223332 457899999999999865443 3444
Q ss_pred ccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHh
Q 013641 376 LASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSL 431 (439)
Q Consensus 376 ~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~ 431 (439)
..++||+++|...++|++.|||+... .+|++||+++++++.+++++|++++.++
T Consensus 348 ~~ggtDa~~~~~~~~~~v~fgPg~~~--~aH~~dE~v~~e~l~~~~~vl~~~i~~l 401 (401)
T TIGR01879 348 SGAGHDAQILAPIVPIGMIFIPSING--ISHNPAEWSNITDCAEGAKVLYLMVYQL 401 (401)
T ss_pred cchHHHHHHHHhhCCEEEEEecCCCC--CcCCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 67899999999888999999999753 6899999999999999999999998764
No 60
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=314.64 Aligned_cols=368 Identities=18% Similarity=0.210 Sum_probs=292.8
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA 105 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~ 105 (439)
...++++++.++|+++|+.+ ++|.++++|++++|+++|+++.... ....++++.++|..+ +|+|.|+++||.+|.
T Consensus 9 ~~~~~l~~~rr~lH~~PEL~--f~E~~Ta~~i~~~L~~~g~~~~~~~--~~~TGvva~~~~g~~-g~tIalRAD~DALPi 83 (392)
T COG1473 9 ELKDELIEWRRDLHEHPELG--FEEYRTAAYIAEKLEELGFEVVEVG--GGKTGVVATLKGGKP-GPTIALRADMDALPI 83 (392)
T ss_pred hhhHHHHHHHHHHhhCCccc--hhHHHHHHHHHHHHHHcCCeeEecc--CCceEEEEEEcCCCC-CCEEEEEeecccCcc
Confidence 46789999999999999997 8999999999999999999933322 135789999987654 469999999999999
Q ss_pred CCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccc
Q 013641 106 EPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEF 185 (439)
Q Consensus 106 ~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 185 (439)
.++ +..||.+.. +|.+|+||+ | ++.+++|.+++.|+ +...+++++|.|+|+|+||.++ |++.+++++.+
T Consensus 84 ~E~--t~~~~~S~~---~G~mHACGH-D--~Hta~lLgaA~~L~-~~~~~~~Gtv~~ifQPAEE~~~--Ga~~mi~~G~~ 152 (392)
T COG1473 84 QEE--TGLPFASKN---PGVMHACGH-D--GHTAILLGAALALA-EHKDNLPGTVRLIFQPAEEGGG--GAKAMIEDGVF 152 (392)
T ss_pred ccc--cCCCcccCC---CCCcccCCc-h--HHHHHHHHHHHHHH-hhhhhCCcEEEEEecccccccc--cHHHHHhcCCc
Confidence 752 336888865 899999999 8 99999999999999 7756799999999999999986 89999999988
Q ss_pred cc-cceEEEEecCCcCCCCcceEEee--ccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchhHHHHhc
Q 013641 186 RE-LNVGFVMDEGQASTNDDFRVFYA--DRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQFDVVKAG 261 (439)
Q Consensus 186 ~~-~~~~~v~~~g~~~p~~~~~i~~~--~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~~~~~~~ 261 (439)
++ +|+++-++.....|.+...+..| ..+...++++|+|+++|++.|+.+ ||+.+++.++..|+.+.....+++
T Consensus 153 ~~~vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~--- 229 (392)
T COG1473 153 DDFVDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPL--- 229 (392)
T ss_pred cccccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCc---
Confidence 88 88777665432114444444444 346778999999999999999999 999999999999987643221111
Q ss_pred cccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcc--cCCCceEEEeecccccc
Q 013641 262 RAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAP--AIRNMSYEIIEKGPIRD 339 (439)
Q Consensus 262 ~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~ 339 (439)
....++++.+++|. +.|+||+++++.+++|+...+..+.+.++|+++++. ...++++++...
T Consensus 230 -----~~~vv~vg~~~aG~------a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~~~----- 293 (392)
T COG1473 230 -----DSAVVTVGKIEAGT------AANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEIDYE----- 293 (392)
T ss_pred -----cCeEEEEEEecCCC------cCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEec-----
Confidence 12578899999997 889999999999999999999999999999988875 356777777763
Q ss_pred CCCCCccccCCCCChHHHHHHHHHHHhCCCC---Cccc-cccCCccHHHHHHhCCCEEEE--ccCCCCC--CCCCCCCCc
Q 013641 340 YKGRPLMTLTDDSNPWWSVFKRAVTSAGGKL---GKPE-ILASTTDARYMRQLGIPVLGF--SPMANTP--ILLHDHNEF 411 (439)
Q Consensus 340 ~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~~-~~~~~tD~~~~~~~gip~v~~--Gp~~~~~--~~~H~~nE~ 411 (439)
..+|+ +.+|..+.+.+++++++..+.. .... ...+++|+++|.+. +|...| |.+.... ...|+|...
T Consensus 294 -~~~p~---~~Nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsEDf~~~~~~-~Pg~~~~lG~~~~~~~~~~~H~p~~~ 368 (392)
T COG1473 294 -RGYPP---VVNDPALTDLLAEAAEEVGGEEVVVVELPPSMAGSEDFGYYLEK-VPGAFFFLGTGSADGGTYPLHHPKFD 368 (392)
T ss_pred -CCCCC---ccCCHHHHHHHHHHHHHhccccceecccCCCCCccchHHHHHHh-CCeeEEEeecCcCCCCcccccCCcCC
Confidence 33444 3567889999999999988632 1222 23489999999875 676643 4333221 238999999
Q ss_pred cchHhHHHHHHHHHHHHHHhhc
Q 013641 412 LKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 412 i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
++.+.+..+++++..+...+..
T Consensus 369 ~de~~l~~g~~~~~~~~~~~~~ 390 (392)
T COG1473 369 FDEAALATGVKLLAALALLYLA 390 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998887754
No 61
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=100.00 E-value=6.6e-40 Score=327.40 Aligned_cols=347 Identities=14% Similarity=0.160 Sum_probs=266.6
Q ss_pred hhHHHHHHhHhcCc-CCC-------CCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeec
Q 013641 29 REPITRFKQYLRFN-TAH-------PNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHL 100 (439)
Q Consensus 29 ~~~i~~l~~lv~ip-s~s-------~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~ 100 (439)
.++.+.|.+|-+|- +.. .++.+.++++|+++||+++|++++.+ ..+|||++++|..++.|+|++.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D----~~gN~~~~~~g~~~~~~~i~~gsHl 78 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFD----DVGNLYGRLVGTEFPEETILTGSHI 78 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEecCCCCCCCeEEEeccc
Confidence 46777788888873 221 24568999999999999999998877 4689999999987777999999999
Q ss_pred ccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC----cccCH
Q 013641 101 DSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG----GFDGM 176 (439)
Q Consensus 101 Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 176 (439)
||||.+ |..|++.|+++.|++++.|+ +.+.+++++|.++++.+||.+ ++.|.
T Consensus 79 Dtv~~g-----------------------G~~dg~~Gv~~~le~~~~l~-~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs 134 (406)
T TIGR03176 79 DTVVNG-----------------------GNLDGQFGALAAWLAVDYLK-EKYGAPLRTVEVLSMAEEEGSRFPYVFWGS 134 (406)
T ss_pred cCCCCC-----------------------CccCchhhHHHHHHHHHHHH-HcCCCCCCCeEEEEeccccCccCCcccccH
Confidence 999986 34488999999999999999 988899999999999999976 12677
Q ss_pred HHHHhcc----c--c--------------------------cccceE--EEEecCCcC--CCCcceEEeeccceEEEEEE
Q 013641 177 AKFVESN----E--F--------------------------RELNVG--FVMDEGQAS--TNDDFRVFYADRSPWHLIIR 220 (439)
Q Consensus 177 ~~~~~~~----~--~--------------------------~~~~~~--~v~~~g~~~--p~~~~~i~~~~~G~~~~~v~ 220 (439)
+.+.-.- . . .+++.. +-++.|..- ......++++.+|..+++|+
T Consensus 135 ~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~ 214 (406)
T TIGR03176 135 KNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVN 214 (406)
T ss_pred HHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEE
Confidence 7665210 0 0 011111 122223211 11236788999999999999
Q ss_pred EeeCCCCcCCCC-C-C-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEee-cccCCCCcccccccCceE
Q 013641 221 AKGAPGHGSRMF-D-N-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKA-GIPSPTGFVMNMQPSEAE 296 (439)
Q Consensus 221 v~G~~~Hs~~p~-~-g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~g-g~~~~~g~~~n~iP~~~~ 296 (439)
|+|+++|+|.|. . + ||+..+++++..|.++... . ....+++++.+++ |. +.|+||++|+
T Consensus 215 v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~----~-------~~~~~~tvG~I~~gg~------~~NvIP~~a~ 277 (406)
T TIGR03176 215 LKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE----I-------GDPLVLTFGKVEPVPN------TVNVVPGETT 277 (406)
T ss_pred EEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh----c-------CCCcEEEEEEEEEcCC------ceEEECCeEE
Confidence 999999999754 3 3 9999999999999764211 0 1225788999985 44 8999999999
Q ss_pred EEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccc
Q 013641 297 AGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPE 374 (439)
Q Consensus 297 ~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~ 374 (439)
+++|+|+.+.++.+++.++|++.+++. ..++++++... ....| +..|+++++.+.+++++.++.. ...
T Consensus 278 ~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~~-----~~~~p----~~~d~~lv~~l~~a~~~~~~~~-~~~ 347 (406)
T TIGR03176 278 FTIDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDLW-----MDEAP----VPMNKEIVAIIEQLAKAEKLNY-RLM 347 (406)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE-----ecCCC----CCCCHHHHHHHHHHHHHcCCCc-eec
Confidence 999999999999999988888877652 34566666531 12222 2346799999999999877653 444
Q ss_pred cccCCccHHHHHHhCCCE-EEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 375 ILASTTDARYMRQLGIPV-LGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 375 ~~~~~tD~~~~~~~gip~-v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
...+++|+++|.+. +|+ +.|||+... ..|+|+|+++++++..++++|+.++..+++
T Consensus 348 ~sggg~Da~~~~~~-vP~~~ifgp~~~g--~~H~p~E~v~~e~l~~g~~vl~~~l~~l~~ 404 (406)
T TIGR03176 348 HSGAGHDAQIFAPR-VPTAMIFVPSIGG--ISHNPAERTNIEDLVEGVKTLADMLYELAY 404 (406)
T ss_pred CcccHHHHHHHHHH-CCEEEEEEeCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 56689999999985 787 579998643 689999999999999999999999999876
No 62
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=100.00 E-value=4.4e-38 Score=326.98 Aligned_cols=353 Identities=14% Similarity=0.134 Sum_probs=265.9
Q ss_pred CCCCchhHHHHHHhHhcCcCCCC-----------CCCCchHHHHHHHHHHhcCC-ceEEEEecCCccEEEEEEcCCCCCC
Q 013641 24 KSHEEREPITRFKQYLRFNTAHP-----------NPNYTAPVSFLISQAQSIGL-QFKTLEFVPNKPILLLTWPGSDPSL 91 (439)
Q Consensus 24 ~~~~~~~~i~~l~~lv~ips~s~-----------~~~e~~~~~~l~~~l~~~G~-~~~~~~~~~~~~nvi~~~~g~~~~~ 91 (439)
.+.-.+++.+.+.+|-+|+.... +..+.++++|+.+||+++|+ +++.+ ..+||+++++|.+++.
T Consensus 176 ~~~~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D----~~GNl~~~~~g~~~~~ 251 (591)
T PRK13590 176 EPVLGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHID----AVGNVVGRYKGSTPQA 251 (591)
T ss_pred CchHHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeEC----CCCCEEEEecCCCCCC
Confidence 44567888999999999865321 23467999999999999999 77765 4689999999876666
Q ss_pred CcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC
Q 013641 92 PSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG 171 (439)
Q Consensus 92 ~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g 171 (439)
|+|++.+||||||.+ |..|+++|++++|++++.|+ +.+.+++++|.|+++++||.+
T Consensus 252 ~~v~~gsHlDTV~~g-----------------------G~~DG~~Gv~a~lea~~~l~-~~~~~~~~~i~vv~~~~EEg~ 307 (591)
T PRK13590 252 KRLLTGSHYDTVRNG-----------------------GKYDGRLGIFVPMACVRELH-RQGRRLPFGLEVVGFAEEEGQ 307 (591)
T ss_pred CeEEEecccccCCCC-----------------------CCcccHHHHHHHHHHHHHHH-HcCCCCCCCeEEEEecCCccc
Confidence 899999999999764 33588999999999999999 999888899999999999973
Q ss_pred ----cccCHHHH--------Hhc----cc----------c------------cccceEEE--EecCCc--CCCCcceEEe
Q 013641 172 ----GFDGMAKF--------VES----NE----------F------------RELNVGFV--MDEGQA--STNDDFRVFY 209 (439)
Q Consensus 172 ----~~~G~~~~--------~~~----~~----------~------------~~~~~~~v--~~~g~~--~p~~~~~i~~ 209 (439)
+..|.+.+ ++. +. + ..+...+= ++.|.. .......+++
T Consensus 308 rF~~~~~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV~ 387 (591)
T PRK13590 308 RYKATFLGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIVT 387 (591)
T ss_pred cCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEEe
Confidence 22566642 220 10 0 00111111 222210 0011357999
Q ss_pred eccceEEEEEEEeeCCCCcCC-CCC-C-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEee-cccCCCC
Q 013641 210 ADRSPWHLIIRAKGAPGHGSR-MFD-N-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKA-GIPSPTG 285 (439)
Q Consensus 210 ~~~G~~~~~v~v~G~~~Hs~~-p~~-g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~g-g~~~~~g 285 (439)
+.+|..+++|+|+|+++|+|. |.. + ||+..+++++..++++... ...++++++.+.+ |.
T Consensus 388 ~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~------------~~~~v~tVG~i~~~Gg----- 450 (591)
T PRK13590 388 SINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ------------DGDSVGTVGMLEVPGG----- 450 (591)
T ss_pred eeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc------------CCCcEEEEEEEEECCC-----
Confidence 999999999999999999997 543 4 9999999999999764210 0113567777764 32
Q ss_pred cccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHH
Q 013641 286 FVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAV 363 (439)
Q Consensus 286 ~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~ 363 (439)
+.|+||++|++++|+|+.+.++.+.+.++|++.+++. ..+++++++.. ...|+ +..|.++++.+.+++
T Consensus 451 -~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~~------~~~~~---~~~d~~lv~~~~~aa 520 (591)
T PRK13590 451 -SINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEET------MRAAA---APSAPAWQQRWEAAV 520 (591)
T ss_pred -CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEe------ecCCC---cCCCHHHHHHHHHHH
Confidence 8999999999999999999999999988888777652 35566666642 12222 345778999999999
Q ss_pred HHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhhc
Q 013641 364 TSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLSS 433 (439)
Q Consensus 364 ~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~~ 433 (439)
++.+... .....++++|+++|...+.++++|||+... ..+|+++|+++++++.+++++|..++..++.
T Consensus 521 ~~~G~~~-~~~~sggg~Da~~~a~~~p~~mifgpg~~~-g~sH~p~E~v~~edL~~g~~vl~~ll~~l~~ 588 (591)
T PRK13590 521 AALGLPL-FRMPSGAGHDAMKLHEIMPQAMLFVRGENA-GISHNPLESSTADDMQLAVQAFQHLLDQLAA 588 (591)
T ss_pred HHcCCCc-ccCCcchhHHHHHHHHHCCEEEEEEeeCCC-CCCCCCccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 8865433 334567899999999887778899998521 2689999999999999999999999988763
No 63
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=100.00 E-value=4.6e-36 Score=311.54 Aligned_cols=356 Identities=12% Similarity=0.092 Sum_probs=266.3
Q ss_pred CCCCCchhHHHHHHhHhcCcCCC-----------CCCCCchHHHHHHHHHHhcCCc-eEEEEecCCccEEEEEEcCCCCC
Q 013641 23 GKSHEEREPITRFKQYLRFNTAH-----------PNPNYTAPVSFLISQAQSIGLQ-FKTLEFVPNKPILLLTWPGSDPS 90 (439)
Q Consensus 23 ~~~~~~~~~i~~l~~lv~ips~s-----------~~~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nvi~~~~g~~~~ 90 (439)
.++.-.+++.+.+.+|-+|+.++ .+..+.++++|+.+||+++|++ ++++ ..+||+++++|.+++
T Consensus 175 ~~~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D----~~gNv~~~~~g~~~~ 250 (591)
T PRK13799 175 YTPAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEID----AVGNVVGRYKAADDD 250 (591)
T ss_pred CChhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeEC----CCCCEEEEcCCCCCC
Confidence 45667889999999999997321 1234679999999999999998 8877 468999999987666
Q ss_pred CCcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCccc
Q 013641 91 LPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEI 170 (439)
Q Consensus 91 ~~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~ 170 (439)
.|+|++.+|+||||. +|++ |+-.|++++|++++.|+ +.+.+++++|.|+.+.+||.
T Consensus 251 ~p~v~~gSHlDTV~~-----------------gG~~------DG~~Gv~a~l~~~~~l~-~~~~~~~~~i~vi~~~~EEg 306 (591)
T PRK13799 251 AKTLITGSHYDTVRN-----------------GGKY------DGREGIFLAIACVKELH-EQGERLPFHFEVIAFAEEEG 306 (591)
T ss_pred CCeEEEeccccccCC-----------------CCcc------ccHHHHHHHHHHHHHHH-HcCCCCCCCeEEEEecCCCc
Confidence 799999999999976 3444 44499999999999999 99999999999999999997
Q ss_pred C----cccCHHHHH--------h----ccc-----cc-----------------ccceEE--EEecCCc--CCCCcceEE
Q 013641 171 G----GFDGMAKFV--------E----SNE-----FR-----------------ELNVGF--VMDEGQA--STNDDFRVF 208 (439)
Q Consensus 171 g----~~~G~~~~~--------~----~~~-----~~-----------------~~~~~~--v~~~g~~--~p~~~~~i~ 208 (439)
. ++.|.+.+. + ++. +. +++..+ -++.|.. .-....+++
T Consensus 307 ~rF~~~~~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV 386 (591)
T PRK13799 307 QRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIV 386 (591)
T ss_pred cCCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEE
Confidence 2 236777765 1 111 00 011111 1121100 000135799
Q ss_pred eeccceEEEEEEEeeCCCCcCC-CC-CC-cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCC
Q 013641 209 YADRSPWHLIIRAKGAPGHGSR-MF-DN-GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTG 285 (439)
Q Consensus 209 ~~~~G~~~~~v~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g 285 (439)
++.+|..+++|+|+|+++|+|. |. .+ ||+..+++++..++++... . .....+++++.++++. |
T Consensus 387 ~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~-------~---~~~~~v~tVG~I~~~~----g 452 (591)
T PRK13799 387 TSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ-------D---QHASLVATMGQLNVPS----G 452 (591)
T ss_pred eeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh-------c---CCCCcEEEEEEEEecC----C
Confidence 9999999999999999999997 53 35 9999999999999774211 0 0112467788887542 2
Q ss_pred cccccccCceEEEEeeecCCCCCHHHHHHHHHHHhccc--CCCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHH
Q 013641 286 FVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPA--IRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAV 363 (439)
Q Consensus 286 ~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~ 363 (439)
+.|+||++|++++|+|+.+.++.+.+.++|++.+++. ..+++++++.. ...|+ +..|.++++.+.+++
T Consensus 453 -a~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~~------~~~~~---~~~d~~lv~~~~~a~ 522 (591)
T PRK13799 453 -STNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAELA------MKAAA---APCAPELMKQLEAAT 522 (591)
T ss_pred -CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEE------ecCCC---cCCCHHHHHHHHHHH
Confidence 7899999999999999999999999888877766542 34455555542 12222 345678999999998
Q ss_pred HHhCCCCCccccccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhh
Q 013641 364 TSAGGKLGKPEILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLS 432 (439)
Q Consensus 364 ~~~~~~~~~~~~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~ 432 (439)
++.+... ....+++++|+++|.+.++|++.|+|++.. ..+|+|+|+++++++..++++|.+++..+.
T Consensus 523 ~~~G~~~-~~~~sgag~Da~~~a~~~p~amif~~~g~~-g~sHsp~E~v~~edL~~g~~vl~~~l~~l~ 589 (591)
T PRK13799 523 DAAGVPL-FELASGAGHDAMKIAEIMDQAMLFTRCGNA-GISHNPLESMTADDMELSADAFLDFLNNFA 589 (591)
T ss_pred HHcCCCc-eecCcchHHHHHHHHhhCCEEEEEEecCCC-CCCCCccccCCHHHHHHHHHHHHHHHHHHh
Confidence 8755432 334467899999999988888999886421 258999999999999999999999998875
No 64
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.95 E-value=4.9e-27 Score=210.69 Aligned_cols=184 Identities=26% Similarity=0.470 Sum_probs=147.7
Q ss_pred EEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCccc
Q 013641 95 LFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFD 174 (439)
Q Consensus 95 ll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~ 174 (439)
+|++||||||. .+.|+++||++..+ +|++||||+.|+|+++++++.|++.|+ +.+.+++++|.|+|+++||.|+..
T Consensus 1 ll~~H~Dtv~~-~~~w~~~pf~~~~~--~~~~~grG~~D~k~~~~~~l~a~~~l~-~~~~~~~~~i~~~~~~~EE~g~~~ 76 (189)
T PF01546_consen 1 LLYAHMDTVPG-PEGWKHDPFELSIE--DGRLYGRGADDMKGGIAAMLAALKALK-ESGDDLPGNIIFLFTPDEEIGSIG 76 (189)
T ss_dssp EEEEES-BCST-GGGSSSSTTSEEEE--TTEEESTTTTTTHHHHHHHHHHHHHHH-HTTTTCSSEEEEEEESTCCGTSTT
T ss_pred CccccccccCC-cCcCCCCCcccEEE--CCEEEcCCcCCCcccHHHHHHHHHHHH-hccccccccccccccccccCCCcc
Confidence 68999999994 67999999999999 999999999999999999999999999 888899999999999999999833
Q ss_pred CHHHHHhccc--ccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHcccc
Q 013641 175 GMAKFVESNE--FRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRE 252 (439)
Q Consensus 175 G~~~~~~~~~--~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~ 252 (439)
|++.+++++. ....++.++. +|+......
T Consensus 77 g~~~l~~~~~~~~~~~~~~~~~-----e~~~~~~~~-------------------------------------------- 107 (189)
T PF01546_consen 77 GAKHLLEEGAFFGLHPDYVIIG-----EPTGKGGVG-------------------------------------------- 107 (189)
T ss_dssp HHHHHHHHCEEEEEEESEEEEC-----ECETTSEEE--------------------------------------------
T ss_pred hhhhhhhhcccccccccccccc-----ccccccccc--------------------------------------------
Confidence 9999998741 1112222221 122100000
Q ss_pred chhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEe
Q 013641 253 SQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEII 332 (439)
Q Consensus 253 ~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 332 (439)
T Consensus 108 -------------------------------------------------------------------------------- 107 (189)
T PF01546_consen 108 -------------------------------------------------------------------------------- 107 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCCccHHHHH---HhCCCEEEEccCCCCCCCCCCCC
Q 013641 333 EKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDARYMR---QLGIPVLGFSPMANTPILLHDHN 409 (439)
Q Consensus 333 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~~~~---~~gip~v~~Gp~~~~~~~~H~~n 409 (439)
. ..+.++++.+.+++++.++....+....+++|++++. ..++|++.|||+.. ++|++|
T Consensus 108 ~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tD~~~~~~~~~~~~~~i~~G~~~~---~~H~~~ 168 (189)
T PF01546_consen 108 S----------------DNDPPLVQALQAAAQEVGGEPPEPVASGGGTDAGFLAEVKGLGIPAIGFGPGGS---NAHTPD 168 (189)
T ss_dssp H----------------CTCHHHHHHHHHHHHHTTSSEEEEEEESSSSTHHHHHCHHHTTEEEEEEESCEE---STTSTT
T ss_pred c----------------cccHHHHHHHHHHHHHHhhccccccceeccccchhhhhhhccccceeeeCCCCC---CCCCCC
Confidence 1 2345699999999999887333667788999999998 56999999999973 799999
Q ss_pred CccchHhHHHHHHHHHHHHHH
Q 013641 410 EFLKDTVFLKGVEVYESVISS 430 (439)
Q Consensus 410 E~i~~~~l~~~~~~~~~~l~~ 430 (439)
|+++++++.+++++|+++|.+
T Consensus 169 E~i~~~~l~~~~~~~~~~l~n 189 (189)
T PF01546_consen 169 EYIDIEDLVKGAKIYAALLEN 189 (189)
T ss_dssp -EEEHHHHHHHHHHHHHHHHT
T ss_pred cEecHHHHHHHHHHHHHHHhC
Confidence 999999999999999999874
No 65
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.94 E-value=4.9e-25 Score=215.06 Aligned_cols=361 Identities=18% Similarity=0.164 Sum_probs=269.1
Q ss_pred CchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceE-EEEec-------CCccEEEEEEcCCCCCCCcEEEee
Q 013641 27 EEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFK-TLEFV-------PNKPILLLTWPGSDPSLPSILFNS 98 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~-~~~~~-------~~~~nvi~~~~g~~~~~~~vll~a 98 (439)
..+++++.+.++++||+.| ..+++.+.++.+|++.+|+.++ +.... .+..-+.++++++.+--|++.|.+
T Consensus 3 ~~~~l~~~F~~~~kI~~~S--~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~s 80 (414)
T COG2195 3 KMERLLDRFLELVKIPTQS--KHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFIS 80 (414)
T ss_pred chHHHHHHHHHHeeCCCCC--CCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccc
Confidence 4678999999999999998 7899999999999999999883 22111 122236677887655458899999
Q ss_pred ecccccCCC-----CCC------------------C---CCCCceeEeCCCCEEEecCc----ccchhHHHHHHHHHHHH
Q 013641 99 HLDSVPAEP-----DKW------------------S---HPPFSAFHSPETGQIFARGS----QDDKCIAIQYIEAIRNL 148 (439)
Q Consensus 99 H~Dtvp~~~-----~~w------------------~---~~Pf~~~~~~~dg~i~GrG~----~D~k~~~aa~l~a~~~l 148 (439)
|+||+|..- ..| . +.|...... .+..+.-.|+ +|+|+|++.++.++..+
T Consensus 81 h~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t-~~~ei~~dGa~LLgaD~kAGia~i~~al~~~ 159 (414)
T COG2195 81 HHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLT-GDEEITTDGATLLGADDKAGIAEIMTALSVL 159 (414)
T ss_pred cccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeee-cceEEeccCccccCCcchhHHHHHHHHHHHH
Confidence 999996411 123 1 233322211 1244555565 49999999999999999
Q ss_pred HHhcC-CCCCeeEEEEEecCcccCcccCHHHHHhcccccccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCC
Q 013641 149 ILVKN-FKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGH 227 (439)
Q Consensus 149 ~~~~~-~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~H 227 (439)
+ +.. .-++++|.+.|+++||.|+ .|...+.-. ++. +++++.+|.| + ...+.+...+...+++++.|+..|
T Consensus 160 ~-~~~~~i~h~~i~~g~s~~Ee~g~-rg~~~~~~a-~f~-a~~ay~iDGg---~--~g~i~~ea~~~~~~~~~~~g~~~h 230 (414)
T COG2195 160 R-EKHPEIPHGGIRGGFSPDEEIGG-RGAANKDVA-RFL-ADFAYTLDGG---P--VGEIPREAFNAAAVRATIVGPNVH 230 (414)
T ss_pred h-hcCccccccCeEEEecchHHhhh-hhhhhccHH-hhh-cceeEecCCC---c--cCeeeeeccchheeeeeeeccCcC
Confidence 8 552 3468999999999999998 888877654 443 6888999843 2 357888999999999999999999
Q ss_pred cCCCCCC--cHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecccCCCCcccccccCceEEEEeeecCC
Q 013641 228 GSRMFDN--GAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPP 305 (439)
Q Consensus 228 s~~p~~g--nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~ 305 (439)
.+..... |++..+.+++..+.....+ ..++...+..+.+. ..|.|.+++.....+|...
T Consensus 231 ~~~a~~~~i~a~~~a~e~~~~~~~~~~~-------------e~t~~~~Gv~~~~~------~~~~V~~~s~~~~~iR~~d 291 (414)
T COG2195 231 PGSAKGKMINALLLAAEFILELPLEEVP-------------ELTEGPEGVYHLGD------STNSVEETSLNLAIIRDFD 291 (414)
T ss_pred ccchHHHHhhHHHhhhhhhhcCCccccc-------------ccccccceEEeccc------cccchhhhhhhhhhhhhcc
Confidence 9975433 8888777777766432111 12344455666665 8888999999999999999
Q ss_pred CCCHHHHHHHHHHHhcc----cC--CCceEEEeeccccccCCCCCccccCCCCChHHHHHHHHHHHhCCCCCccccccCC
Q 013641 306 TVDPDLIRRRIAEEWAP----AI--RNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFKRAVTSAGGKLGKPEILAST 379 (439)
Q Consensus 306 ~~~~~~i~~~i~~~~~~----~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~ 379 (439)
....+.....+++++.+ .. ..+++++. ..||.+ .+..++++++.+++++++++.+ |....+.||
T Consensus 292 ~~~~~s~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~Yp~~-~~~~~~~iv~~a~~a~~~l~~~-p~v~~i~gG 361 (414)
T COG2195 292 NLLFRARKDSMKDVVEEMAASLGKLAGAELEVK--------DSYPGW-KIKPDSPLVDLAKKAYKELGIK-PKVKPIHGG 361 (414)
T ss_pred hhHHHHhHHHHHHHHHHHHHHhhhccceEEEEe--------ccccCc-CCCCCchHHHHHHHHHHHhCCC-ceEEEeecc
Confidence 87777776666666653 12 44455444 345543 4677889999999999999988 477778899
Q ss_pred ccHHHHHHhCCCEE--EEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhh
Q 013641 380 TDARYMRQLGIPVL--GFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLS 432 (439)
Q Consensus 380 tD~~~~~~~gip~v--~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~ 432 (439)
+|++.+...|+|+. ..|| .. ++|+++|+++++++.+..+++..++..+.
T Consensus 362 td~~~is~~g~p~~~i~~Gp-~~---n~Hs~~E~v~I~s~ek~~~~l~~l~~~~~ 412 (414)
T COG2195 362 TDGGVLSFKGLPTPNISTGP-GE---NPHSPDEFVSIESMEKAVQVLVELLKLAA 412 (414)
T ss_pred cchhhhhccCCCCceEeccc-cc---CCCCccceeehHHHHHHHHHHHHHHHHhh
Confidence 99999998887776 4456 44 69999999999999999999999987764
No 66
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.83 E-value=1.6e-19 Score=171.12 Aligned_cols=219 Identities=15% Similarity=0.141 Sum_probs=167.1
Q ss_pred CCchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCC-ce-----EEEEe--cC-CccEEEEEEcCCCCCCCcEEE
Q 013641 26 HEEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGL-QF-----KTLEF--VP-NKPILLLTWPGSDPSLPSILF 96 (439)
Q Consensus 26 ~~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~-~~-----~~~~~--~~-~~~nvi~~~~g~~~~~~~vll 96 (439)
...+++.++...||+.||++++.+|...+++|...|+++.. +- ..+.. .+ ++.||+|-.+|. .++++|++
T Consensus 5 is~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~-~~k~tvvl 83 (553)
T COG4187 5 ISSERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGG-TSKRTVVL 83 (553)
T ss_pred hhHHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecC-CCCceEEE
Confidence 34789999999999999999899999999999999998753 21 11111 11 688999999984 35799999
Q ss_pred eeecccccCCC-CCCCCCCCce-----------eE--e------CCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCC
Q 013641 97 NSHLDSVPAEP-DKWSHPPFSA-----------FH--S------PETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKP 156 (439)
Q Consensus 97 ~aH~Dtvp~~~-~~w~~~Pf~~-----------~~--~------~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~ 156 (439)
-||+|||...+ .....-.|.+ .. + +.++|++|||+.|||+|+|+.|..++.+. +.+ ..
T Consensus 84 ~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa-~~~-~~ 161 (553)
T COG4187 84 HGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFA-ART-DR 161 (553)
T ss_pred eeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHh-hCC-CC
Confidence 99999999976 2223333333 00 0 25799999999999999999999999998 764 68
Q ss_pred CeeEEEEEecCcccCcccCHHHHHhcc-ccc---ccceEEEEecCCcCCC---C-cceEEeeccceEEEEEEEeeCCCCc
Q 013641 157 IRTVHASYVPDEEIGGFDGMAKFVESN-EFR---ELNVGFVMDEGQASTN---D-DFRVFYADRSPWHLIIRAKGAPGHG 228 (439)
Q Consensus 157 ~~~i~~~~~~~EE~g~~~G~~~~~~~~-~~~---~~~~~~v~~~g~~~p~---~-~~~i~~~~~G~~~~~v~v~G~~~Hs 228 (439)
.|||.|+..+|||..+ .|++..+... .++ .+++..+++.....|. + .-.+++|..|..--.+-+.|...|+
T Consensus 162 ~GNlLf~a~pdEE~~s-~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHv 240 (553)
T COG4187 162 QGNLLFMAVPDEEVES-RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHV 240 (553)
T ss_pred CCcEEEEeccchhhhc-ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeecccc
Confidence 8999999999999987 8988777531 111 2344444443222221 1 1357888889888888999999999
Q ss_pred CCCCCC-cHHHHHHHHHHHHH
Q 013641 229 SRMFDN-GAMENLMKSVEMIT 248 (439)
Q Consensus 229 ~~p~~g-nai~~~~~~i~~l~ 248 (439)
|.|..| ||-..+++++.+|+
T Consensus 241 G~~f~Gvnan~maSei~~~le 261 (553)
T COG4187 241 GYPFEGVNANFMASEITRRLE 261 (553)
T ss_pred CCcccCCCHHHHHHHHHHHhh
Confidence 999999 99999999999886
No 67
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.80 E-value=2.5e-18 Score=164.16 Aligned_cols=123 Identities=17% Similarity=0.189 Sum_probs=98.5
Q ss_pred CCCCCCchHHHHHHHHHHhcCCceEEEEec--------C--------CccEEEEEEcCCCCCCCcEEEeeecccccCCC-
Q 013641 45 HPNPNYTAPVSFLISQAQSIGLQFKTLEFV--------P--------NKPILLLTWPGSDPSLPSILFNSHLDSVPAEP- 107 (439)
Q Consensus 45 s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~--------~--------~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~- 107 (439)
.++++|.++++||+++|+++|++++.+.+. . ...|||+.++|+. .++|+|.||||||++..
T Consensus 49 ~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~ 126 (346)
T PRK10199 49 TGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSD 126 (346)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC--CCeEEEEEEcCcCCCCCC
Confidence 345789999999999999999998754321 1 1357999998854 47899999999997542
Q ss_pred CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhc
Q 013641 108 DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVES 182 (439)
Q Consensus 108 ~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 182 (439)
..| ++. .+-++++|+.|||+|++++|++++.|+ +.+ ++.+|.|+++++||.|. .|+++++++
T Consensus 127 ~~~---~~~------~~g~~~~GA~DnasGvA~lLe~ar~l~-~~~--~~~~I~fv~~~~EE~Gl-~GS~~~~~~ 188 (346)
T PRK10199 127 ADV---DAN------LGGLTLQGMDDNAAGLGVMLELAERLK-NVP--TEYGIRFVATSGEEEGK-LGAENLLKR 188 (346)
T ss_pred Ccc---ccC------CCCcccCCccccHHHHHHHHHHHHHHh-hCC--CCCcEEEEEECCcccCc-HHHHHHHHh
Confidence 112 221 233889999999999999999999998 654 67899999999999997 999999986
No 68
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.79 E-value=3.2e-17 Score=158.95 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=108.7
Q ss_pred CchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC-
Q 013641 27 EEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA- 105 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~- 105 (439)
+.+.++++|++|+++||+| +.|.+++++++++|+++|++++.+ +.+|+++.++|.. +.++|+|.||||+|..
T Consensus 1 ~~~~~~~lLk~Lv~~~s~S--G~E~~V~~~l~~~l~~~g~ev~~D----~~Gnlia~~~g~~-~~~~v~l~aHmDevG~~ 73 (343)
T TIGR03106 1 DTDYLTETLLALLAIPSPT--GFTDAVVRYVAERLEDLGIEYELT----RRGAIRATLPGRE-ATPARAVVTHLDTLGAM 73 (343)
T ss_pred ChHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEEC----CCeEEEEEECCCC-CCCeEEEEEeeccccce
Confidence 3567899999999999997 789999999999999999988764 6889999987743 3479999999999922
Q ss_pred ---------------CC----------------CC------C--C-------------CCCCc---eeE-----------
Q 013641 106 ---------------EP----------------DK------W--S-------------HPPFS---AFH----------- 119 (439)
Q Consensus 106 ---------------~~----------------~~------w--~-------------~~Pf~---~~~----------- 119 (439)
+. ++ + . .++++ ..+
T Consensus 74 V~~I~~~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~ 153 (343)
T TIGR03106 74 VRELKDNGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLV 153 (343)
T ss_pred eeEECCCCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHH
Confidence 10 00 0 0 01121 000
Q ss_pred ----e-------------CCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc
Q 013641 120 ----S-------------PETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG 172 (439)
Q Consensus 120 ----~-------------~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~ 172 (439)
+ ..++++|||+ .|||+++++++.+++.|+ +.+.+++.+|+++|+++||.|.
T Consensus 154 ~lGV~~Gd~v~~~~~~~~~~~~~i~gr~-~D~K~G~a~~l~~~~~l~-~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 154 RLGISVGDFVAFDPQPEFLANGFIVSRH-LDDKAGVAALLAALKAIV-EHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred HcCCCCCCEEEECCccEEecCCEEEEEe-cccHHhHHHHHHHHHHHH-hcCCCCCceEEEEEECCcccCc
Confidence 0 1478999998 799999999999999999 8777788999999999999995
No 69
>PRK09961 exoaminopeptidase; Provisional
Probab=99.75 E-value=1.8e-16 Score=154.24 Aligned_cols=258 Identities=14% Similarity=0.129 Sum_probs=177.5
Q ss_pred HHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC-----C
Q 013641 32 ITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA-----E 106 (439)
Q Consensus 32 i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~-----~ 106 (439)
+++|++|+++||+| +.|.+++++++++|+++|+.++.+ +.+|+++.+.|. ++++|+|.||||+|+. .
T Consensus 3 ~~~L~~L~~~~s~s--G~E~~v~~~i~~~l~~~~~~v~~D----~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~ 74 (344)
T PRK09961 3 LSLLKALSEADAIA--SSEQEVRQILLEEADRLQKEVRFD----GLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSIS 74 (344)
T ss_pred HHHHHHHHhCCCCC--CChHHHHHHHHHHHHhhCCEEEEC----CCCCEEEEEcCC--CCCEEEEEeccceeceEEEEEC
Confidence 46799999999997 799999999999999999987754 688999988663 3479999999999943 0
Q ss_pred C---------CCCCC----------------------------CCCc-eeEe----------------------------
Q 013641 107 P---------DKWSH----------------------------PPFS-AFHS---------------------------- 120 (439)
Q Consensus 107 ~---------~~w~~----------------------------~Pf~-~~~~---------------------------- 120 (439)
+ .+|.. +++. ..++
T Consensus 75 ~~G~l~~~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~ 154 (344)
T PRK09961 75 REGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQV 154 (344)
T ss_pred CCceEEEEeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEE
Confidence 0 02211 1111 1111
Q ss_pred CCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccceEEEEecCCcC
Q 013641 121 PETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDEGQAS 200 (439)
Q Consensus 121 ~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~v~~~g~~~ 200 (439)
..++.+.|+. .|++.++++++++++.|+ +. +++.+|+++|+..||.|. .|++.... .++ .|+++++|... .
T Consensus 155 ~~~~~i~gka-lDnR~g~~~lle~l~~l~-~~--~~~~~v~~~~tvqEEvG~-rGa~~aa~--~i~-pd~~I~vDv~~-~ 225 (344)
T PRK09961 155 LPHQRVMGKA-FDDRLGCYLLVTLLRELH-DA--ELPAEVWLVASSSEEVGL-RGGQTATR--AVS-PDVAIVLDTAC-W 225 (344)
T ss_pred ecCCEEEEee-chhhHhHHHHHHHHHHhh-hc--CCCceEEEEEEcccccch-HHHHHHHh--ccC-CCEEEEEeccC-C
Confidence 0346777875 599999999999999998 54 467899999999999997 88876653 233 46677776321 0
Q ss_pred CCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccchhHHHHhccccCCCceEeeEeEEeecc
Q 013641 201 TNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRESQFDVVKAGRAANSEVISVNLVYLKAGI 280 (439)
Q Consensus 201 p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gg~ 280 (439)
|+ .|... ..+...+
T Consensus 226 ~d---------------------------~~~~~-----------------------------------~~~~~~l---- 239 (344)
T PRK09961 226 AK---------------------------NFDYG-----------------------------------AANHRQI---- 239 (344)
T ss_pred CC---------------------------CCCCC-----------------------------------CCccccc----
Confidence 00 00000 0000001
Q ss_pred cCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCCCCChHHHHHH
Q 013641 281 PSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTDDSNPWWSVFK 360 (439)
Q Consensus 281 ~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 360 (439)
..+..+.+.. .. + ..|.++.+.+.
T Consensus 240 -------------------------------------------g~Gp~i~~~D--------~~-~----i~~~~l~~~l~ 263 (344)
T PRK09961 240 -------------------------------------------GNGPMLVLSD--------KS-L----IAPPKLTAWIE 263 (344)
T ss_pred -------------------------------------------CCCceEEEcc--------CC-c----CCCHHHHHHHH
Confidence 1222222111 10 1 12567888888
Q ss_pred HHHHHhCCCCCccc-cccCCccHHHHHH--hCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHHHHHhh
Q 013641 361 RAVTSAGGKLGKPE-ILASTTDARYMRQ--LGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESVISSLS 432 (439)
Q Consensus 361 ~a~~~~~~~~~~~~-~~~~~tD~~~~~~--~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~l~~~~ 432 (439)
+++++.+... ... ...++||++.+.. .|+|++.+||+.. ..|+++|+++++++..+++++..++..+.
T Consensus 264 ~~A~~~~Ip~-Q~~~~~ggGTDa~~~~~~~~Giptv~ig~p~r---y~Hs~~E~v~~~D~~~~~~Ll~~~i~~l~ 334 (344)
T PRK09961 264 TVAAEIGIPL-QADMFSNGGTDGGAVHLTGTGVPTVVMGPATR---HGHCAASIADCRDILQMIQLLSALIQRLT 334 (344)
T ss_pred HHHHHcCCCc-EEEecCCCcchHHHHHHhCCCCCEEEechhhh---cccChhheEEHHHHHHHHHHHHHHHHHcC
Confidence 8888877443 332 2346799997654 6999999999854 79999999999999999999999997663
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.72 E-value=1.6e-15 Score=147.00 Aligned_cols=254 Identities=15% Similarity=0.179 Sum_probs=176.4
Q ss_pred HHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC-------
Q 013641 33 TRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA------- 105 (439)
Q Consensus 33 ~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~------- 105 (439)
++|++|+++|++| +.|.+++++++++|++++.+++.+ +.+|+++.++|.+.+.++|+|.||||+|+-
T Consensus 2 ~~L~~L~~~~gpS--G~E~~v~~~i~~~l~~~~~~v~~D----~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~ 75 (350)
T TIGR03107 2 NKIKEVTELQGTS--GFEHPIRDYLRQDITPLVDQVETD----GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKP 75 (350)
T ss_pred hHHHHHHhCCCCC--CCcHHHHHHHHHHHHhhCCEEEEC----CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECC
Confidence 5699999999997 899999999999999999887766 578999998764123479999999999911
Q ss_pred ---------CCCCCC-------------CC--CCcee-------------------------Ee----------------
Q 013641 106 ---------EPDKWS-------------HP--PFSAF-------------------------HS---------------- 120 (439)
Q Consensus 106 ---------~~~~w~-------------~~--Pf~~~-------------------------~~---------------- 120 (439)
+ +|. .+ ++.+. ++
T Consensus 76 ~G~l~~~~vG--G~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~v 153 (350)
T TIGR03107 76 DGTFRVVELG--GWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRP 153 (350)
T ss_pred CceEEEEeCC--CccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCC
Confidence 1 110 00 00000 00
Q ss_pred ------------C-CCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccc
Q 013641 121 ------------P-ETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRE 187 (439)
Q Consensus 121 ------------~-~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 187 (439)
. .++++.|+. .|++.|+++++++++.|+ +. +++.+++++|++.||.|. +|++.... .++
T Consensus 154 Gd~v~~~~~~~~~~~~~~i~~ka-lDdR~g~a~l~e~l~~l~-~~--~~~~~l~~~~tvqEEvG~-rGA~~aa~--~i~- 225 (350)
T TIGR03107 154 GDVIVPQTETILTANGKNVISKA-WDNRYGVLMILELLESLK-DQ--ELPNTLIAGANVQEEVGL-RGAHVSTT--KFN- 225 (350)
T ss_pred CCEEEECCCeEEEcCCCEEEEec-cccHHHHHHHHHHHHHhh-hc--CCCceEEEEEEChhhcCc-hhhhhHHh--hCC-
Confidence 0 134577776 499999999999999998 55 477899999999999997 89885543 343
Q ss_pred cceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccchhHHHHhccccCCC
Q 013641 188 LNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRESQFDVVKAGRAANSE 267 (439)
Q Consensus 188 ~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 267 (439)
.|+++++|.... +...
T Consensus 226 pD~aI~vDv~~~-----------------------------~d~~----------------------------------- 241 (350)
T TIGR03107 226 PDIFFAVDCSPA-----------------------------GDIY----------------------------------- 241 (350)
T ss_pred CCEEEEEecCCc-----------------------------CCCC-----------------------------------
Confidence 477888864210 0000
Q ss_pred ceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccc
Q 013641 268 VISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMT 347 (439)
Q Consensus 268 ~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 347 (439)
+. +. + . -..+..+.+.. .. .
T Consensus 242 -----------~~-----------~~----------------------~--~---lg~Gp~i~~~D--------~~-~-- 261 (350)
T TIGR03107 242 -----------GD-----------QG----------------------G--K---LGEGTLLRFFD--------PG-H-- 261 (350)
T ss_pred -----------CC-----------Cc----------------------c--c---cCCCceEEEec--------CC-C--
Confidence 00 00 0 0 01222222111 11 1
Q ss_pred cCCCCChHHHHHHHHHHHhCCCCCccccccCCccHH--HHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHH
Q 013641 348 LTDDSNPWWSVFKRAVTSAGGKLGKPEILASTTDAR--YMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYE 425 (439)
Q Consensus 348 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~tD~~--~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~ 425 (439)
..+..+.+.+.++.++.+... ......++||++ .+...|+|++.+|.+.. ..|++.|.++++|+..+++++.
T Consensus 262 --i~~~~l~~~l~~~A~~~~I~~-Q~~~~~gGtDa~~~~~~~~Gvpt~~i~ip~R---y~Hs~~e~i~~~D~~~~~~Ll~ 335 (350)
T TIGR03107 262 --IMLPRMKDFLLTTAEEAGIKY-QYYVAKGGTDAGAAHLKNSGVPSTTIGVCAR---YIHSHQTLYSIDDFLAAQAFLQ 335 (350)
T ss_pred --CCCHHHHHHHHHHHHHcCCCc-EEecCCCCchHHHHHHhCCCCcEEEEccCcc---cccChhheeeHHHHHHHHHHHH
Confidence 124578888888888877654 444445799998 45557999999886654 6999999999999999999999
Q ss_pred HHHHHhh
Q 013641 426 SVISSLS 432 (439)
Q Consensus 426 ~~l~~~~ 432 (439)
.++..+.
T Consensus 336 ~~i~~l~ 342 (350)
T TIGR03107 336 AIVKKLD 342 (350)
T ss_pred HHHHhcC
Confidence 9998764
No 71
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.64 E-value=5.5e-14 Score=134.71 Aligned_cols=261 Identities=14% Similarity=0.160 Sum_probs=176.0
Q ss_pred hhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC---
Q 013641 29 REPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA--- 105 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~--- 105 (439)
+++.++|++|+++|++| +.|.++.++++++|++++.+++.+ +.+|||+.++|.+ +.+.|++.||||.+-.
T Consensus 2 ~~~~~~LkeL~~~~gps--G~E~eVr~~~~~el~~~~~ev~~D----~lGnlia~~~g~~-g~~~imi~AHmDEiG~mV~ 74 (355)
T COG1363 2 EELLELLKELLEAPGPS--GYEEEVRDVLKEELEPLGDEVEVD----RLGNLIAKKGGKN-GPPKVMIAAHMDEIGFMVK 74 (355)
T ss_pred hHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHHHhCCceEEc----CCCcEEEEecCCC-CCccEEEEeecceeeeeEE
Confidence 56889999999999997 889999999999999999998876 6789999998832 3366999999999911
Q ss_pred --CC---------CCCCCC---------------CCcee-------------------------Ee--------------
Q 013641 106 --EP---------DKWSHP---------------PFSAF-------------------------HS-------------- 120 (439)
Q Consensus 106 --~~---------~~w~~~---------------Pf~~~-------------------------~~-------------- 120 (439)
.+ .+|... ++.++ ++
T Consensus 75 ~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI 154 (355)
T COG1363 75 EIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGI 154 (355)
T ss_pred EECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCC
Confidence 00 011100 00000 00
Q ss_pred --------------CCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccccc
Q 013641 121 --------------PETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFR 186 (439)
Q Consensus 121 --------------~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 186 (439)
..++++-+|. -|||.+++++|++++.|+ +.+++.+++++|++.||.|. .|++.... .++
T Consensus 155 ~vGd~v~~~~~~~~l~~~~i~ska-lDdR~gva~lle~lk~l~---~~~~~~~vy~v~tvqEEVGl-rGA~~~a~--~i~ 227 (355)
T COG1363 155 RVGDFVVFDPRFRELANGRVVSKA-LDDRAGVAALLELLKELK---GIELPADVYFVASVQEEVGL-RGAKTSAF--RIK 227 (355)
T ss_pred CCCCEEEEcCceEEecCCcEEeee-ccchHhHHHHHHHHHHhc---cCCCCceEEEEEecchhhcc-chhhcccc--ccC
Confidence 0235666664 499999999999999995 55788999999999999997 88875553 233
Q ss_pred ccceEEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccchhHHHHhccccCC
Q 013641 187 ELNVGFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRESQFDVVKAGRAANS 266 (439)
Q Consensus 187 ~~~~~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 266 (439)
.|+++.+|.. +.++ .+|.. ..+
T Consensus 228 -pd~aiavd~~---~~~d------~~~~~---------~~~--------------------------------------- 249 (355)
T COG1363 228 -PDIAIAVDVT---PAGD------TPGVP---------KGD--------------------------------------- 249 (355)
T ss_pred -CCEEEEEecc---cccC------CCCCc---------ccc---------------------------------------
Confidence 4666666532 1110 00000 000
Q ss_pred CceEeeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCcc
Q 013641 267 EVISVNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLM 346 (439)
Q Consensus 267 ~~~t~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 346 (439)
+.+ ..+..+.+.. .+. .
T Consensus 250 -------~~l-----------------------------------------------g~Gp~i~~~D-------~~~-~- 266 (355)
T COG1363 250 -------VKL-----------------------------------------------GKGPVIRVKD-------ASG-I- 266 (355)
T ss_pred -------ccc-----------------------------------------------CCCCEEEEEc-------CCC-C-
Confidence 000 1111121221 011 1
Q ss_pred ccCCCCChHHHHHHHHHHHhCCCCCcccccc-CCccHHHHHH--hCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHH
Q 013641 347 TLTDDSNPWWSVFKRAVTSAGGKLGKPEILA-STTDARYMRQ--LGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEV 423 (439)
Q Consensus 347 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~-~~tD~~~~~~--~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~ 423 (439)
.+..+.+.|.++.++.+... .....+ ++||++.+.. .|+|+..+|++.. ..|+|.|.++++++..+.++
T Consensus 267 ----~~~~l~~~L~~~A~~~~Ip~-Q~~v~~~ggTDA~a~~~~g~gvpta~Igip~r---y~Hs~~e~~~~~D~~~~~~L 338 (355)
T COG1363 267 ----YHPKLRKFLLELAEKNNIPY-QVDVSPGGGTDAGAAHLTGGGVPTALIGIPTR---YIHSPVEVAHLDDLEATVKL 338 (355)
T ss_pred ----CCHHHHHHHHHHHHHcCCCe-EEEecCCCCccHHHHHHcCCCCceEEEecccc---cccCcceeecHHHHHHHHHH
Confidence 13456667777777666543 333333 7999886654 4799999998865 69999999999999999999
Q ss_pred HHHHHHHhh
Q 013641 424 YESVISSLS 432 (439)
Q Consensus 424 ~~~~l~~~~ 432 (439)
+..++..+.
T Consensus 339 l~~~i~~~~ 347 (355)
T COG1363 339 LVAYLESLD 347 (355)
T ss_pred HHHHHHhcc
Confidence 999998864
No 72
>PRK09864 putative peptidase; Provisional
Probab=99.62 E-value=1.3e-13 Score=133.45 Aligned_cols=256 Identities=14% Similarity=0.140 Sum_probs=173.2
Q ss_pred HHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecCCccEEEEEEcCCCCCCCcEEEeeecccccC-----C
Q 013641 32 ITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVPNKPILLLTWPGSDPSLPSILFNSHLDSVPA-----E 106 (439)
Q Consensus 32 i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~-----~ 106 (439)
+++|++|+++|++| +.|.+++++++++|+.++.+++.+ ..+|+|+.. |. ++++|+|.||||.|+- .
T Consensus 3 ~~~L~~L~~~~g~S--G~E~~v~~~l~~~l~~~~dev~~D----~~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~ 73 (356)
T PRK09864 3 IELLQQLCEASAVS--GDEQEVRDILINTLEPCVNEITFD----GLGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHID 73 (356)
T ss_pred HHHHHHHHcCCCCC--CchHHHHHHHHHHHHHhCCEEEEC----CCCCEEEEe-CC--CCcEEEEEecccccCEEEEEEC
Confidence 46799999999997 899999999999999999987766 578999986 53 2379999999999921 0
Q ss_pred C---------CCCCC--------------C-CCceeE------------------------e------------------
Q 013641 107 P---------DKWSH--------------P-PFSAFH------------------------S------------------ 120 (439)
Q Consensus 107 ~---------~~w~~--------------~-Pf~~~~------------------------~------------------ 120 (439)
+ .+|.. . ++.+.+ +
T Consensus 74 ~~G~l~~~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD 153 (356)
T PRK09864 74 ESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGD 153 (356)
T ss_pred CCCeEEEEeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCC
Confidence 0 01110 0 111111 0
Q ss_pred ----------CCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccce
Q 013641 121 ----------PETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNV 190 (439)
Q Consensus 121 ----------~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~ 190 (439)
..++++.|+.- |++.|+++++++++.|+ + ++.+++++|++.||.|. +|++.... .++ .|+
T Consensus 154 ~v~~~~~~~~l~~~~i~~kal-DnR~g~~~lle~l~~l~-~----~~~~vy~v~TvQEEvGl-rGA~~aa~--~i~-PDi 223 (356)
T PRK09864 154 FISPEANFACWGEDKVVGKAL-DNRIGCAMMAELLQTVN-N----PEITLYGVGSVEEEVGL-RGAQTSAE--HIK-PDV 223 (356)
T ss_pred EEEECCCcEEEcCCEEEEEeC-ccHHHHHHHHHHHHHhh-c----CCCeEEEEEEcchhcch-HHHHHHHh--cCC-CCE
Confidence 02356777754 99999999999999998 4 67899999999999997 89876554 233 477
Q ss_pred EEEEecCCcCCCCcceEEeeccceEEEEEEEeeCCCCcCCCCCCcHHHHHHHHHHHHHccccchhHHHHhccccCCCceE
Q 013641 191 GFVMDEGQASTNDDFRVFYADRSPWHLIIRAKGAPGHGSRMFDNGAMENLMKSVEMITKFRESQFDVVKAGRAANSEVIS 270 (439)
Q Consensus 191 ~~v~~~g~~~p~~~~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~t 270 (439)
++++|.+.. ++ .|... ..
T Consensus 224 aIavDvt~~---~d-------------------------~p~~~----------------------------------~~ 241 (356)
T PRK09864 224 VIVLDTAVA---GD-------------------------VPGID----------------------------------NI 241 (356)
T ss_pred EEEEecccC---CC-------------------------CCCCc----------------------------------cc
Confidence 888874310 00 00000 00
Q ss_pred eeEeEEeecccCCCCcccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccccccCCCCCccccCC
Q 013641 271 VNLVYLKAGIPSPTGFVMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGPIRDYKGRPLMTLTD 350 (439)
Q Consensus 271 ~~~~~i~gg~~~~~g~~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 350 (439)
-....+-.|. .+.+.. .. . .
T Consensus 242 ~~~~~lG~Gp-----------------------------------------------~i~~~D--------~~-~----i 261 (356)
T PRK09864 242 KYPLKLGQGP-----------------------------------------------GLMLFD--------KR-Y----F 261 (356)
T ss_pred ccccccCCCC-----------------------------------------------eEEEcc--------CC-c----c
Confidence 0001111121 111111 00 1 1
Q ss_pred CCChHHHHHHHHHHHhCCCCCcccc-ccCCccHHHHHH--hCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHHH
Q 013641 351 DSNPWWSVFKRAVTSAGGKLGKPEI-LASTTDARYMRQ--LGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYESV 427 (439)
Q Consensus 351 ~~~~~~~~l~~a~~~~~~~~~~~~~-~~~~tD~~~~~~--~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~~ 427 (439)
.+..+.+.+.++.++.+... .... ..++||+..+.. .|+|++.++.... +.|+|.|-++++|+..+++++..+
T Consensus 262 ~~~~l~~~l~~~A~~~~Ip~-Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~R---Y~Hs~~e~~~~~D~e~~~~Ll~~~ 337 (356)
T PRK09864 262 PNQKLVAALKSCAAHNDLPL-QFSTMKTGATDGGRYNVMGGGRPVVALCLPTR---YLHANSGMISKADYDALLTLIRDF 337 (356)
T ss_pred CCHHHHHHHHHHHHHcCCCc-eEEEcCCCCchHHHHHHhCCCCcEEEEeeccC---cCCCcceEeEHHHHHHHHHHHHHH
Confidence 24568888888888876554 3333 337999987764 4899998874433 699999999999999999999999
Q ss_pred HHHhh
Q 013641 428 ISSLS 432 (439)
Q Consensus 428 l~~~~ 432 (439)
+.++.
T Consensus 338 ~~~l~ 342 (356)
T PRK09864 338 LTTLT 342 (356)
T ss_pred HHhcc
Confidence 97764
No 73
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.53 E-value=3.1e-14 Score=116.05 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=88.4
Q ss_pred eeccceEEEEEEEeeCCCCcCCCCCC-cHHHHHHHHHHHHHccccchh-HHHHhccccCCCceEeeEeEEeecccCCCCc
Q 013641 209 YADRSPWHLIIRAKGAPGHGSRMFDN-GAMENLMKSVEMITKFRESQF-DVVKAGRAANSEVISVNLVYLKAGIPSPTGF 286 (439)
Q Consensus 209 ~~~~G~~~~~v~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~t~~~~~i~gg~~~~~g~ 286 (439)
++++|..+++++++|+++|+|.|..+ ||+..|++++..|.++..... ... ......++++++.+++|.
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~----~~~~~~~~~~~~~i~gG~------ 70 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPE----EFFPGPPTLNIGSIEGGT------ 70 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHH----HCTCTSEEEEEEEEEEES------
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccc----cccccccceeEeecccCC------
Confidence 57899999999999999999999988 999999999999987643210 000 112245899999999998
Q ss_pred ccccccCceEEEEeeecCCCCCHHHHHHHHHHHhcc
Q 013641 287 VMNMQPSEAEAGFDARLPPTVDPDLIRRRIAEEWAP 322 (439)
Q Consensus 287 ~~n~iP~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~ 322 (439)
..|+||++|++++++|+.|.++.+++.++|++.+++
T Consensus 71 ~~n~ip~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 71 APNVIPDEATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp STTEESSEEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred cCCEECCEEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988864
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.88 E-value=7.8e-09 Score=107.68 Aligned_cols=146 Identities=19% Similarity=0.264 Sum_probs=112.0
Q ss_pred CchhHHHHHHhHhcC-cCCCCC-CCCchHHHHHHHHHHhcCCceEE----EEe-----------------cCCccEEEEE
Q 013641 27 EEREPITRFKQYLRF-NTAHPN-PNYTAPVSFLISQAQSIGLQFKT----LEF-----------------VPNKPILLLT 83 (439)
Q Consensus 27 ~~~~~i~~l~~lv~i-ps~s~~-~~e~~~~~~l~~~l~~~G~~~~~----~~~-----------------~~~~~nvi~~ 83 (439)
..++.++.++++.++ |.+..+ .+|..+.+|+.+++.+..-..+. .+. ..+..||+..
T Consensus 55 ~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVk 134 (834)
T KOG2194|consen 55 SEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVK 134 (834)
T ss_pred HHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEe
Confidence 567889999999999 665433 35779999999998886433222 111 0145789998
Q ss_pred EcCCCC-CCCcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEE
Q 013641 84 WPGSDP-SLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHA 162 (439)
Q Consensus 84 ~~g~~~-~~~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~ 162 (439)
+.+... ++..||+++|+|+||.++ |+.||..++|++|+++|.+. +....++.+|+|
T Consensus 135 i~~k~~~~~~~lLlnaHfDSvpt~~----------------------gAtDDg~~va~mLe~lRv~s-~~~~~l~~~vVF 191 (834)
T KOG2194|consen 135 ISPKNGNDKNALLLNAHFDSVPTGP----------------------GATDDGSGVASMLEALRVLS-KSDKLLTHSVVF 191 (834)
T ss_pred cCCCCCCccceeeeeccccccCCCC----------------------CCCcchhHHHHHHHHHHHhh-cCCCcccccEEE
Confidence 865432 345899999999999875 88899999999999999999 877778999999
Q ss_pred EEecCcccCcccCHHHHHhccccc-ccceEEEEec
Q 013641 163 SYVPDEEIGGFDGMAKFVESNEFR-ELNVGFVMDE 196 (439)
Q Consensus 163 ~~~~~EE~g~~~G~~~~~~~~~~~-~~~~~~v~~~ 196 (439)
+|..+||.+. .|+..++.+..+. .++..+.++.
T Consensus 192 LfNgaEE~~L-~gsH~FItQH~w~~~~ka~INLea 225 (834)
T KOG2194|consen 192 LFNGAEESGL-LGSHAFITQHPWSKNIKAVINLEA 225 (834)
T ss_pred EecCcccchh-hhcccceecChhhhhhheEEeccc
Confidence 9999999997 8999999876554 3565566653
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.74 E-value=1.5e-08 Score=89.94 Aligned_cols=86 Identities=27% Similarity=0.378 Sum_probs=64.9
Q ss_pred cEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc
Q 013641 93 SILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG 172 (439)
Q Consensus 93 ~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~ 172 (439)
.|++.||+|+++... ++ -++.|+.|+.+|++++|++++.|+ +.+.+++++|+|+|..+||.|.
T Consensus 2 ~ivi~aH~Ds~~~~~---------------~~-~~~~GA~DnasGva~lLelAr~l~-~~~~~~~~~i~fv~~~~EE~gl 64 (179)
T PF04389_consen 2 YIVIGAHYDSVGGDA---------------DG-SWSPGANDNASGVAALLELARVLK-ELKPQPKRTIRFVFFDGEEQGL 64 (179)
T ss_dssp EEEEEEE--BESCCC----------------T-CSSS-TTTTHHHHHHHHHHHHHHH-HSTHSSSEEEEEEEESSGGGTS
T ss_pred EEEEEeecCCCCCcC---------------CC-cccCCcccchHHHHHHHHHHHHHH-HhhcccCccEEEEEecccccCc
Confidence 589999999998211 11 344599999999999999999999 8777788999999999999997
Q ss_pred ccCHHHHHhcc--cccccceEEEEec
Q 013641 173 FDGMAKFVESN--EFRELNVGFVMDE 196 (439)
Q Consensus 173 ~~G~~~~~~~~--~~~~~~~~~v~~~ 196 (439)
.|++++++.. ...++...+.+|.
T Consensus 65 -~GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 65 -LGSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp -HHHHHHHHHHHCHHHHEEEEEEECS
T ss_pred -cchHHHHHhhhcccccceeEEeccc
Confidence 8999999732 2334455666654
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.44 E-value=6.8e-07 Score=85.12 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=53.7
Q ss_pred CCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcccccccceEEEEec
Q 013641 122 ETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNEFRELNVGFVMDE 196 (439)
Q Consensus 122 ~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~~~~~v~~~ 196 (439)
.++++.|+.- |++.|+++++++++.|+ +. .+..+++++|++.||.|. .|++....+ ++ .|+++++|.
T Consensus 124 ~~~~i~gkal-DdR~g~~~lle~l~~l~-~~--~~~~~v~~v~tvqEEvG~-rGA~~aa~~--i~-PD~ai~vD~ 190 (292)
T PF05343_consen 124 GNGRIVGKAL-DDRAGCAVLLELLRELK-EK--ELDVDVYFVFTVQEEVGL-RGAKTAAFR--IK-PDIAIAVDV 190 (292)
T ss_dssp TTTEEEETTH-HHHHHHHHHHHHHHHHT-TS--S-SSEEEEEEESSCTTTS-HHHHHHHHH--H--CSEEEEEEE
T ss_pred CCCEEEEEeC-CchhHHHHHHHHHHHHh-hc--CCCceEEEEEEeeeeecC-cceeecccc--cC-CCEEEEEee
Confidence 3567899976 99999999999999999 65 356999999999999997 898876653 32 477888864
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00039 Score=63.66 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=96.6
Q ss_pred CchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecC-------CccEEEEEEcCCCCCCCcEEEeee
Q 013641 27 EEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVP-------NKPILLLTWPGSDPSLPSILFNSH 99 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~-------~~~nvi~~~~g~~~~~~~vll~aH 99 (439)
+..++.+.|.-+ .+|.+-++.+..++.+||.+.+..+|+.++.+.+.+ .-.||++++..+. ...+.+.+|
T Consensus 49 ~~~~~~~~L~p~-lv~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A--~r~lVlach 125 (338)
T KOG3946|consen 49 DWNRLWENLLPI-LVPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNA--SRYLVLACH 125 (338)
T ss_pred CHHHHHHhhhhh-hccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCc--chheeeecc
Confidence 455566665444 344444457889999999999999999988765542 2468999996553 478889999
Q ss_pred cccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCC----CCCeeEEEEEecCccc-----
Q 013641 100 LDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNF----KPIRTVHASYVPDEEI----- 170 (439)
Q Consensus 100 ~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~----~~~~~i~~~~~~~EE~----- 170 (439)
||+--..+ | ... |+.|.-.++|+++..+++|. +.-. ..+-.+.++|..+||.
T Consensus 126 ydsk~~p~--~-------~~v---------gatdsAvpcamll~laq~l~-~~~~~~~~~s~lsL~LvFFDGEEAf~eW~ 186 (338)
T KOG3946|consen 126 YDSKIFPG--G-------MFV---------GATDSAVPCAMLLNLAQALD-KILCSKVSASQLSLQLVFFDGEEAFEEWG 186 (338)
T ss_pred cccccCCC--c-------ceE---------eeccccccHHHHHHHHHHHH-HHHhcccCcCceeEEEEEeccHHHHhhcC
Confidence 99864421 1 122 88898899999999999887 4321 2346899999999983
Q ss_pred --CcccCHHHHHhc
Q 013641 171 --GGFDGMAKFVES 182 (439)
Q Consensus 171 --g~~~G~~~~~~~ 182 (439)
.+..|++++.++
T Consensus 187 p~DSlYGsRhLA~~ 200 (338)
T KOG3946|consen 187 PEDSLYGSRHLAAK 200 (338)
T ss_pred CccccchHHHHHHH
Confidence 344788888763
No 78
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=97.45 E-value=0.00038 Score=70.73 Aligned_cols=52 Identities=27% Similarity=0.252 Sum_probs=46.7
Q ss_pred cCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhccc
Q 013641 129 RGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESNE 184 (439)
Q Consensus 129 rG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 184 (439)
.|+.|+..|++++|++++.|+ .. +++.+|.|++...||.|. .|..+++.+..
T Consensus 224 ~GA~DNasGva~llEiAr~l~-~~--~p~~~v~f~~~~aEE~Gl-~GS~~~~~~~~ 275 (435)
T COG2234 224 PGADDNASGVAALLELARVLK-GN--PPKRTVRFVAFGAEESGL-LGSEAYVKRLS 275 (435)
T ss_pred CCcccccHHHHHHHHHHHHHh-cC--CCCceEEEEEecchhhcc-cccHHHHhcCC
Confidence 388999999999999999999 54 488999999999999997 99999998654
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=97.29 E-value=0.00084 Score=70.74 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=65.8
Q ss_pred CccEEEEEEcCCCCCCCcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHH---HHHHhc
Q 013641 76 NKPILLLTWPGSDPSLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIR---NLILVK 152 (439)
Q Consensus 76 ~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~---~l~~~~ 152 (439)
...||++.++|+....+-|++.+|-|.... |+.|..+|.+.++...+ .++ +.
T Consensus 337 ki~NIig~I~Gs~epD~~ViigahrDSw~~------------------------Ga~dp~sGta~Ll~i~~~~~~~~-k~ 391 (702)
T KOG2195|consen 337 KIQNIIGKIEGSEEPDRYVIIGAHRDSWTF------------------------GAIDPNSGTALLLEIARALSKLK-KR 391 (702)
T ss_pred eeeeEEEEEecCcCCCeEEEEecccccccc------------------------CCcCCCccHHHHHHHHHHHHHHH-Hc
Confidence 357999999996544589999999998633 56677788776765555 455 67
Q ss_pred CCCCCeeEEEEEecCcccCcccCHHHHHhcc
Q 013641 153 NFKPIRTVHASYVPDEEIGGFDGMAKFVESN 183 (439)
Q Consensus 153 ~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 183 (439)
|++|.++|+|+.+.+||-|. .|+..+++..
T Consensus 392 gwrP~RtI~F~sWdAeEfGl-iGStE~~E~~ 421 (702)
T KOG2195|consen 392 GWRPRRTILFASWDAEEFGL-LGSTEWAEEY 421 (702)
T ss_pred CCCccceEEEEEccchhccc-cccHHHHHHH
Confidence 89999999999999999997 8999999864
No 80
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0024 Score=61.86 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=72.6
Q ss_pred CccEEEEEEc-C-----CCCCCCcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHH
Q 013641 76 NKPILLLTWP-G-----SDPSLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLI 149 (439)
Q Consensus 76 ~~~nvi~~~~-g-----~~~~~~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~ 149 (439)
..+||.+++. | ++...|+|++.+||||..+.+ |-. -|+-.+++|++++|+.++.+.
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap--~ls----------------vgADSNGSGvvaLLelarlfS 253 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP--GLS----------------VGADSNGSGVVALLELARLFS 253 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCC--CCC----------------CCCCCCCccHHHHHHHHHHHH
Confidence 3578999987 3 233569999999999998764 211 156566788999999999887
Q ss_pred HhcC----CCCCeeEEEEEecCcccCcccCHHHHHhc--cccc-ccceEEEEec
Q 013641 150 LVKN----FKPIRTVHASYVPDEEIGGFDGMAKFVES--NEFR-ELNVGFVMDE 196 (439)
Q Consensus 150 ~~~~----~~~~~~i~~~~~~~EE~g~~~G~~~~~~~--~~~~-~~~~~~v~~~ 196 (439)
+.- -..+.++.|+.+.+--.-- .|.++|++- ..+. .+|+++|+|.
T Consensus 254 -kly~ypsTrakYnLlF~lt~aG~lNy-qGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 254 -KLYDYPSTRAKYNLLFILTAAGKLNY-QGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred -HHhcCcccccceeEEEEEccCccccc-cchhhhhhcchHHHHhcccEEEEhhh
Confidence 642 1347899999998654433 799999973 2333 5788888863
No 81
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=95.82 E-value=0.051 Score=50.00 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=57.1
Q ss_pred CcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhc---CCCCCeeEEEEEecCc
Q 013641 92 PSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVK---NFKPIRTVHASYVPDE 168 (439)
Q Consensus 92 ~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~---~~~~~~~i~~~~~~~E 168 (439)
|.|++.+.||+...-+ +. +.|+.+.-.|++++|.++++|. +. .-.++++|.|.|..+|
T Consensus 1 ~iIlv~armDs~s~F~----------------~~--s~GA~s~~sglvaLLaaA~aL~-~~~~~~~~~~knV~F~~F~GE 61 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH----------------DL--SPGADSSVSGLVALLAAAEALS-KLLPDSSNLNKNVLFAFFNGE 61 (234)
T ss_pred CEEEEEecccchhccc----------------CC--CCCcccchHHHHHHHHHHHHHH-HhhhccccccCcEEEEEecCc
Confidence 5789999999986643 11 3477778899999999999998 65 1257899999999999
Q ss_pred ccCcccCHHHHHhc
Q 013641 169 EIGGFDGMAKFVES 182 (439)
Q Consensus 169 E~g~~~G~~~~~~~ 182 (439)
-.|. .|.+.++.+
T Consensus 62 s~dY-iGS~R~vyD 74 (234)
T PF05450_consen 62 SFDY-IGSSRFVYD 74 (234)
T ss_pred cccc-cchHHHHHH
Confidence 9886 888888854
No 82
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=94.58 E-value=0.033 Score=53.21 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHhCCCCCcc-ccccCCccHHHHHHh--CCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHH
Q 013641 352 SNPWWSVFKRAVTSAGGKLGKP-EILASTTDARYMRQL--GIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEV 423 (439)
Q Consensus 352 ~~~~~~~l~~a~~~~~~~~~~~-~~~~~~tD~~~~~~~--gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~ 423 (439)
+..+.+.+.++.++..... .. ....++||+..+... |+|++.++.... +.|+|.|.++++|+..++++
T Consensus 222 ~~~l~~~l~~~A~~~~Ip~-Q~~~~~~ggTDa~~~~~~~~Gi~t~~i~iP~r---y~Hs~~e~~~~~Di~~~~~L 292 (292)
T PF05343_consen 222 NPKLVDKLREIAEENGIPY-QREVFSGGGTDAGAIQLSGGGIPTAVISIPCR---YMHSPVEVIDLDDIEATIDL 292 (292)
T ss_dssp HHHHHHHHHHHHHHTT--E-EEEEESSSSSTHHHHHTSTTSSEEEEEEEEEB---STTSTTEEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCe-EEEecCCcccHHHHHHHcCCCCCEEEEecccc---cCCCcceEEEHHHHHHHhhC
Confidence 4689999999999887554 33 445689999988764 899998875543 69999999999999988764
No 83
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=92.40 E-value=0.26 Score=47.24 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=52.1
Q ss_pred ccEEEEEEcCCCCCCCcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCC
Q 013641 77 KPILLLTWPGSDPSLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKP 156 (439)
Q Consensus 77 ~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~ 156 (439)
..|+|+.-.|. ..++++.+|+|.-.. |..|+-.|+++++.++..|. ..+
T Consensus 178 ~y~~Ia~~~~e---n~vv~i~AH~DHW~~------------------------G~tDN~lg~~~AV~~~~~lr-~~~--- 226 (486)
T COG4882 178 DYNVIAVDGGE---NGVVLIGAHLDHWYT------------------------GFTDNILGVAQAVETAGRLR-GRG--- 226 (486)
T ss_pred EEEEEEecCCC---CCceEEeechhhhhh------------------------cccchhhhHHHHHHHHHHHh-hcC---
Confidence 35666654332 368999999998654 44588899999999999998 554
Q ss_pred CeeEEEEEecCcccCccc---------CHHHHHhc
Q 013641 157 IRTVHASYVPDEEIGGFD---------GMAKFVES 182 (439)
Q Consensus 157 ~~~i~~~~~~~EE~g~~~---------G~~~~~~~ 182 (439)
..+.++..++||.|+ + |.+.++++
T Consensus 227 -~~~~lv~FtAEE~g~-p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 227 -LAAGLVVFTAEEHGM-PGMASFYWAAGSRGLLKE 259 (486)
T ss_pred -cceeEEEEeccccCC-CCCcceeecccchHHHhh
Confidence 356677777899876 4 55666654
No 84
>PRK02256 putative aminopeptidase 1; Provisional
Probab=92.39 E-value=0.2 Score=50.90 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCccc-c-----ccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHH
Q 013641 351 DSNPWWSVFKRAVTSAGGKLGKPE-I-----LASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVY 424 (439)
Q Consensus 351 ~~~~~~~~l~~a~~~~~~~~~~~~-~-----~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~ 424 (439)
.|..+...+.+++++.+... ... . ..|+||+..+.+.|+|++-+|.... ..|++.|-+...|+..+++++
T Consensus 380 ~~~~~~~~i~~iA~~~~Ip~-Q~~~~~r~d~~~GgTig~~~s~~Gi~tvdiGiP~l---~MHS~rE~~~~~D~~~~~~ll 455 (462)
T PRK02256 380 ANAEFVAEVRNLFNKNNVVW-QTAELGKVDQGGGGTIAKFLANYGMEVIDCGVALL---SMHSPFEIASKADIYETYKAY 455 (462)
T ss_pred CCHHHHHHHHHHHHHcCCCE-EEEEeecCCCCCcChHHHHHcCCCCcEEEechhhh---ccccHHHHhhHHHHHHHHHHH
Confidence 36678889999998876543 221 2 2578998888878999999997655 599999999999999999999
Q ss_pred HHHHH
Q 013641 425 ESVIS 429 (439)
Q Consensus 425 ~~~l~ 429 (439)
..++.
T Consensus 456 ~~f~~ 460 (462)
T PRK02256 456 KAFLE 460 (462)
T ss_pred HHHHh
Confidence 88764
No 85
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=91.01 E-value=2.4 Score=40.58 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=71.3
Q ss_pred HHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEec-----------------CCcc-EEEEEEcCCC-CCCC
Q 013641 32 ITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFV-----------------PNKP-ILLLTWPGSD-PSLP 92 (439)
Q Consensus 32 i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~-----------------~~~~-nvi~~~~g~~-~~~~ 92 (439)
+.+-++|++.|.-- -.-...++++++.++++|++++..+.. ...| -|+.+|.|.. ...+
T Consensus 1 vn~aRdL~n~P~n~--~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~ 78 (311)
T PF00883_consen 1 VNLARDLVNTPPNI--LTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKK 78 (311)
T ss_dssp HHHHHHHHHS-TTT--SSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSE
T ss_pred ChHHHhhhCCChhh--cCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCc
Confidence 35678899888853 344688999999999999988876532 0112 3455565544 2345
Q ss_pred cEEEeee---cccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcc
Q 013641 93 SILFNSH---LDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEE 169 (439)
Q Consensus 93 ~vll~aH---~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE 169 (439)
+|.|.|= +|+=-.. -.|- +.+. +--.|++|.|+.+.+++++. +.+ ++.+|+.++...|-
T Consensus 79 ~i~LVGKGiTFDtGG~~-----lKp~--------~~M~--~Mk~DM~GAAaV~ga~~aia-~lk--~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 79 PIALVGKGITFDTGGLS-----LKPS--------GGME--GMKYDMGGAAAVLGAMRAIA-KLK--LPVNVVAVLPLAEN 140 (311)
T ss_dssp EEEEEEEEEEEEE-TTS-----SSCS--------TTGG--GGGGGGHHHHHHHHHHHHHH-HCT---SSEEEEEEEEEEE
T ss_pred cEEEEcceEEEecCCcc-----CCCC--------cchh--hcccCcchHHHHHHHHHHHH-HcC--CCceEEEEEEcccc
Confidence 5555543 3332111 0000 0000 11244788899999999999 775 56899999988876
Q ss_pred c
Q 013641 170 I 170 (439)
Q Consensus 170 ~ 170 (439)
.
T Consensus 141 ~ 141 (311)
T PF00883_consen 141 M 141 (311)
T ss_dssp -
T ss_pred c
Confidence 4
No 86
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=89.94 E-value=0.74 Score=46.99 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHhCCCC---CccccccCCccHH-HHH-HhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHH
Q 013641 351 DSNPWWSVFKRAVTSAGGKL---GKPEILASTTDAR-YMR-QLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYE 425 (439)
Q Consensus 351 ~~~~~~~~l~~a~~~~~~~~---~~~~~~~~~tD~~-~~~-~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~ 425 (439)
.|..+...+++++++.+... ......++|+|.+ +.. +.|+|++-+|.... ..|++.|-+...|+...++++.
T Consensus 373 td~~~~a~i~~la~~~~Ip~Q~~~~~~d~~~GsTig~i~~s~~Gi~tvDiGiP~l---~MHS~rE~~~~~D~~~~~~l~~ 449 (465)
T PTZ00371 373 TNGVTASLLKAIAKKANIPIQEFVVKNDSPCGSTIGPILSSNLGIRTVDIGIPQL---AMHSIREMCGVVDIYYLVKLIK 449 (465)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHhCCCCcEEEechhhc---ccccHHHHccHHHHHHHHHHHH
Confidence 35788999999998876432 0111233466654 444 47999999997765 5999999999999999999999
Q ss_pred HHHHHhhccc
Q 013641 426 SVISSLSSFV 435 (439)
Q Consensus 426 ~~l~~~~~~~ 435 (439)
.++..+....
T Consensus 450 af~~~~~~~~ 459 (465)
T PTZ00371 450 AFFTNYSKVD 459 (465)
T ss_pred HHHHhhhhhc
Confidence 9987665443
No 87
>PRK05015 aminopeptidase B; Provisional
Probab=89.10 E-value=8.1 Score=38.57 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=73.6
Q ss_pred hhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhc---CCceEEEEec----CCccEEEEEEcCCCCCCCcEEEeeecc
Q 013641 29 REPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSI---GLQFKTLEFV----PNKPILLLTWPGSDPSLPSILFNSHLD 101 (439)
Q Consensus 29 ~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~---G~~~~~~~~~----~~~~nvi~~~~g~~~~~~~vll~aH~D 101 (439)
-+.+.+.++|++.|.-- -.-...++...++++++ ++++++.+.. .+.+.+++.=+|+. .|+.++.-+|.
T Consensus 100 ~~~~~~aRdLvn~P~n~--ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~--~pP~lv~L~Y~ 175 (424)
T PRK05015 100 LKIIDWVRDTINAPAEE--LGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSE--RPPVLLALDYN 175 (424)
T ss_pred HHHHHHHHHHhcCCccc--CCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCC--CCCEEEEEEec
Confidence 34467778888888753 22245666666677766 5777766532 24455666655654 35555544443
Q ss_pred cccCCCCCCCCCCCc-eeEeCCCCEEEecCc-------------ccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecC
Q 013641 102 SVPAEPDKWSHPPFS-AFHSPETGQIFARGS-------------QDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPD 167 (439)
Q Consensus 102 tvp~~~~~w~~~Pf~-~~~~~~dg~i~GrG~-------------~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~ 167 (439)
|.++.. .|.. .-+- -|.-|=-|- .| ++|.|+.+.+++++. +.+ ++.+|.++++..
T Consensus 176 --~~g~~~---~~v~~aLVG--KGITFDSGG~sLKps~~M~~MK~D-MgGAAaV~ga~~~a~-~~~--l~~nV~~il~~a 244 (424)
T PRK05015 176 --PTGDPD---APVYACLVG--KGITFDSGGYSIKPSAGMDSMKSD-MGGAATVTGALALAI-TRG--LNKRVKLFLCCA 244 (424)
T ss_pred --CCCCCC---CCeeEEEec--CceEecCCCccCCCCcCHHHhhcc-hhHHHHHHHHHHHHH-hcC--CCceEEEEEEec
Confidence 333211 1221 1111 222222221 23 467788899998887 664 678999999998
Q ss_pred cccC
Q 013641 168 EEIG 171 (439)
Q Consensus 168 EE~g 171 (439)
|-.-
T Consensus 245 ENmi 248 (424)
T PRK05015 245 ENLI 248 (424)
T ss_pred ccCC
Confidence 8653
No 88
>PRK02813 putative aminopeptidase 2; Provisional
Probab=87.34 E-value=1.1 Score=45.25 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHhCCCCCccc----cccCCccHH-HHH-HhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHH
Q 013641 352 SNPWWSVFKRAVTSAGGKLGKPE----ILASTTDAR-YMR-QLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYE 425 (439)
Q Consensus 352 ~~~~~~~l~~a~~~~~~~~~~~~----~~~~~tD~~-~~~-~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~ 425 (439)
|......+++++++.+... ... ..++|+|.+ +.. +.|+|++-+|.... ..|++.|-+...|+...++++.
T Consensus 347 ~~~~~a~~~~ia~~~~Ip~-Q~~v~~~d~~gGstig~i~~s~~Gi~tvdiGiP~l---~MHS~~E~~~~~D~~~~~~l~~ 422 (428)
T PRK02813 347 DAESAAVFKLLCEKAGVPY-QEFVNRSDMPCGSTIGPITAARLGIRTVDVGAPML---AMHSARELAGVKDHAYLIKALT 422 (428)
T ss_pred CHHHHHHHHHHHHHcCCCE-EEEEecCCCCCccHHHHHHHhCCCCcEEEeChhhc---ccccHHHHccHHHHHHHHHHHH
Confidence 5678889999998876442 211 123677765 444 47999999997655 5999999999999999999998
Q ss_pred HHHH
Q 013641 426 SVIS 429 (439)
Q Consensus 426 ~~l~ 429 (439)
.++.
T Consensus 423 ~f~~ 426 (428)
T PRK02813 423 AFFS 426 (428)
T ss_pred HHhc
Confidence 7764
No 89
>PRK02256 putative aminopeptidase 1; Provisional
Probab=87.18 E-value=1.1 Score=45.57 Aligned_cols=47 Identities=36% Similarity=0.446 Sum_probs=37.1
Q ss_pred CCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCH
Q 013641 123 TGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGM 176 (439)
Q Consensus 123 dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~ 176 (439)
++.|.|.+- |++.++.+++.|++.+. .+...++++++..||.|+ .|+
T Consensus 251 ~efI~s~rL-DNr~~~~~~leal~~~~-----~~~~~~~~~~~dqEEVGs-~ga 297 (462)
T PRK02256 251 RSLIGAYGQ-DDRVCAYTSLEALLELE-----NPEKTAVVLLVDKEEIGS-EGN 297 (462)
T ss_pred cceeecccc-ccHHHHHHHHHHHHhcc-----cCCCeEEEEEEcccccCC-cch
Confidence 456766665 99999999999998654 355789999999999996 444
No 90
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=84.36 E-value=22 Score=36.43 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=75.2
Q ss_pred hHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEec----CCccEEEEEEcCCCCCCCcEEEeeecccccC
Q 013641 30 EPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFV----PNKPILLLTWPGSDPSLPSILFNSHLDSVPA 105 (439)
Q Consensus 30 ~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~ 105 (439)
+-+.+-++|++.|.-- -.-...++++++.++++|+++++.+.. .+.+.+++.=+|+.. .|.++.. +|---+.
T Consensus 155 ~~~~~aRdL~n~P~n~--~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~p~lv~l-~Y~g~~~ 230 (468)
T cd00433 155 EGVNLARDLVNTPAND--LTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEE-PPRLIVL-EYKGKGA 230 (468)
T ss_pred HHHHHHHHhhcCCccc--CCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCC-CCEEEEE-EECCCCC
Confidence 3456677777777743 233578888999999999999887632 244556665556542 2444433 3322111
Q ss_pred CCCCCCCCCCceeEeCCCCEEEecCc---------c---cchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCccc
Q 013641 106 EPDKWSHPPFSAFHSPETGQIFARGS---------Q---DDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEI 170 (439)
Q Consensus 106 ~~~~w~~~Pf~~~~~~~dg~i~GrG~---------~---D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~ 170 (439)
. ..|... +- -|.-|=-|- . -|++|.|+.+.+++++. +.+ ++.+|+.++...|-.
T Consensus 231 ~-----~~~i~L-VG--KGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia-~l~--~~vnV~~i~~~~EN~ 296 (468)
T cd00433 231 S-----KKPIAL-VG--KGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIA-ELK--LPVNVVGVLPLAENM 296 (468)
T ss_pred C-----CCcEEE-Ec--CceEecCCCccccCccChhhccccchhHHHHHHHHHHHH-HcC--CCceEEEEEEeeecC
Confidence 1 112221 11 222222221 1 22588899999999999 765 678999999988864
No 91
>PRK02813 putative aminopeptidase 2; Provisional
Probab=82.74 E-value=1.5 Score=44.20 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=36.7
Q ss_pred CEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCccc---CHH
Q 013641 124 GQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFD---GMA 177 (439)
Q Consensus 124 g~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~---G~~ 177 (439)
+.|.|.+ -|++.++.+++.|+..+. . ...++++++..||.|+ . |++
T Consensus 226 e~i~s~~-lDnr~~~~~~l~al~~~~-~-----~~~~~~~~~d~EEVGs-~~~~GA~ 274 (428)
T PRK02813 226 EFISSGR-LDNLSSCHAGLEALLAAA-S-----DATNVLAAFDHEEVGS-ATKQGAD 274 (428)
T ss_pred CEEEEec-chhHHHHHHHHHHHHhcC-C-----CCeEEEEEEecCccCC-CCCcccC
Confidence 4555555 499999999999998765 3 5789999999999997 5 665
No 92
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=80.02 E-value=35 Score=35.45 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=74.4
Q ss_pred HHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceE-EEEec----CCccEEEEEEcCCCCCCCcEEEeeecccccC
Q 013641 31 PITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFK-TLEFV----PNKPILLLTWPGSDPSLPSILFNSHLDSVPA 105 (439)
Q Consensus 31 ~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~-~~~~~----~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~ 105 (439)
.+.+-++|++.|.-- -.-...++...+.++++|++++ +.+.. .+.+.+++.=+|+. .|+.++.-+|.- .
T Consensus 214 ~vn~ARdLvn~P~N~--ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~--~pPrli~L~Y~g--~ 287 (569)
T PTZ00412 214 CVNEARNLGNLREDE--GVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSR--HEPYLVVFEYIG--N 287 (569)
T ss_pred HHHHHHHhccCChhh--cCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCC--CCCEEEEEEeCC--C
Confidence 355677888887753 1224677777777778899886 44321 24556666666654 345555445432 1
Q ss_pred CCCCCCCCCCceeEeCCCCEEEecCc---------c---cchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC
Q 013641 106 EPDKWSHPPFSAFHSPETGQIFARGS---------Q---DDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG 171 (439)
Q Consensus 106 ~~~~w~~~Pf~~~~~~~dg~i~GrG~---------~---D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g 171 (439)
.+. ..|...+ - -|.-|=-|- . .|++|.|+.+.+++++. +.+ ++.+|+.++...|-.-
T Consensus 288 ~~~---~~~iaLV-G--KGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA-~Lk--lpvnVv~iiplaENm~ 356 (569)
T PTZ00412 288 PRS---SAATALV-G--KGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIA-KLQ--LPVNVVAAVGLAENAI 356 (569)
T ss_pred CCC---CCcEEEE-c--CceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHH-HcC--CCeEEEEEEEhhhcCC
Confidence 110 1232221 1 233332222 1 22478899999999998 765 6689999999888643
No 93
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=78.80 E-value=32 Score=35.35 Aligned_cols=123 Identities=16% Similarity=0.097 Sum_probs=74.3
Q ss_pred HHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEec----CCccEEEEEEcCCCCCCCcEEEeeecccccCC
Q 013641 31 PITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFV----PNKPILLLTWPGSDPSLPSILFNSHLDSVPAE 106 (439)
Q Consensus 31 ~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~ 106 (439)
.+.+-++|++.|.-- -.-...++++.+.++++|+++++.+.. .+.+.+++.=+|+. .|+.++.-+|-- ..
T Consensus 173 ~~~~aRdL~n~P~n~--~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~--~~prli~l~Y~g--~~ 246 (483)
T PRK00913 173 GVNLARDLVNEPPNI--LTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSA--NPPRLIVLEYKG--GK 246 (483)
T ss_pred HHHHHHHhhCCChhh--cCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCC--CCCeEEEEEECC--CC
Confidence 356667777777743 233577888888889999999876532 24556666656654 344444333321 10
Q ss_pred CCCCCCCCCceeEeCCCCEEEecCc------------ccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC
Q 013641 107 PDKWSHPPFSAFHSPETGQIFARGS------------QDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG 171 (439)
Q Consensus 107 ~~~w~~~Pf~~~~~~~dg~i~GrG~------------~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g 171 (439)
.|... +- -|.-|=-|- --|++|.|+.+.+++++. +.+ ++.+|+.+....|-.-
T Consensus 247 ------~~i~L-VG--KGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia-~lk--l~vnV~~v~~l~ENm~ 311 (483)
T PRK00913 247 ------KPIAL-VG--KGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALA-ELK--LPVNVVGVVAACENMP 311 (483)
T ss_pred ------CeEEE-Ec--CceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHH-HcC--CCceEEEEEEeeccCC
Confidence 12111 11 122221111 123588899999999999 765 6789999999888653
No 94
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=77.88 E-value=3.8 Score=41.87 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=34.2
Q ss_pred CCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEE-ecCcccCcccCHH
Q 013641 123 TGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASY-VPDEEIGGFDGMA 177 (439)
Q Consensus 123 dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~-~~~EE~g~~~G~~ 177 (439)
++.|.|.+- |++.++.++|.|++.+. ....+....+.+++ +..||.|+ .|..
T Consensus 242 ~e~i~s~rl-Dnr~~~~~~l~al~~~~-~~~~~~~~~~~v~~~~d~EEVGs-~ga~ 294 (465)
T PTZ00371 242 EEFISSPRL-DNLGSSFCAFKALTEAV-ESLGENSSNIRMVCLFDHEEVGS-SSSQ 294 (465)
T ss_pred CCeEEEecc-hhHHHHHHHHHHHHhcc-ccccCCCCceEEEEEECCcCCCC-Ccch
Confidence 345656554 99999999999998876 32001233454444 88999997 5543
No 95
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=67.98 E-value=6.3 Score=39.51 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=58.3
Q ss_pred CccEEEEEEcCCCC-CCCcEEEeeecccccCCC----CCCCCCCCceeEeCCCCEEE-ecCcccchhHHHHHHHHHHHHH
Q 013641 76 NKPILLLTWPGSDP-SLPSILFNSHLDSVPAEP----DKWSHPPFSAFHSPETGQIF-ARGSQDDKCIAIQYIEAIRNLI 149 (439)
Q Consensus 76 ~~~nvi~~~~g~~~-~~~~vll~aH~Dtvp~~~----~~w~~~Pf~~~~~~~dg~i~-GrG~~D~k~~~aa~l~a~~~l~ 149 (439)
..+|+....+.... +...+.|.||+|.||.-. -+-..||-...++ +.++- .+|+ |+ .+++..+.. |.
T Consensus 45 E~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~--~~~l~~~~Ga-d~-i~~~~~~a~---L~ 117 (414)
T COG2195 45 ELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVN--PQILKATLGA-DN-IGLAIGLAV---LS 117 (414)
T ss_pred hhccccccccccCCCCeeeEEeeccccccccccccccccccccccccccC--CceeeeccCc-ch-hhhhhHHhh---cC
Confidence 44566665544321 246778999999999632 2344567777777 77888 6776 54 555554443 33
Q ss_pred HhcCCCCCeeEEEEEecCcccCcccCHH
Q 013641 150 LVKNFKPIRTVHASYVPDEEIGGFDGMA 177 (439)
Q Consensus 150 ~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 177 (439)
+...++...++++||.++ .|+.
T Consensus 118 -----~~~~P~~~~~t~~~ei~~-dGa~ 139 (414)
T COG2195 118 -----PEHFPLEVLLTGDEEITT-DGAT 139 (414)
T ss_pred -----cccCCceeeeecceEEec-cCcc
Confidence 135689999999999986 6765
No 96
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=65.39 E-value=40 Score=32.42 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=65.9
Q ss_pred CCchHHHHHHHHHHhcCC-ceEEEEec----------------CCccEEEEEEcCC--------CCCCCcEEEeeecccc
Q 013641 49 NYTAPVSFLISQAQSIGL-QFKTLEFV----------------PNKPILLLTWPGS--------DPSLPSILFNSHLDSV 103 (439)
Q Consensus 49 ~e~~~~~~l~~~l~~~G~-~~~~~~~~----------------~~~~nvi~~~~g~--------~~~~~~vll~aH~Dtv 103 (439)
...++.+-+.+.|++.|. .++..... ...+-|+....+. ..+ .+|+|-|=.|-+
T Consensus 43 aLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq~~~s~~~~-iPVV~aavtd~v 121 (322)
T COG2984 43 ALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQALVSATKT-IPVVFAAVTDPV 121 (322)
T ss_pred hHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHHHHHHhcCC-CCEEEEccCchh
Confidence 446788889999999998 33322211 1234455544220 111 456666666655
Q ss_pred cCCC-CCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc
Q 013641 104 PAEP-DKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG 172 (439)
Q Consensus 104 p~~~-~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~ 172 (439)
...- ..|..+ ++.++ |.+| ...+.-.+.+++.+. +--.+|.+++.++|+...
T Consensus 122 ~a~Lv~~~~~p---------g~NvT--GvsD-~~~v~q~i~lik~~~-----Pnak~Igv~Y~p~E~ns~ 174 (322)
T COG2984 122 GAKLVKSLEQP---------GGNVT--GVSD-LLPVAQQIELIKALL-----PNAKSIGVLYNPGEANSV 174 (322)
T ss_pred hccCCccccCC---------CCcee--ecCC-cchHHHHHHHHHHhC-----CCCeeEEEEeCCCCcccH
Confidence 4432 334322 56666 5556 668999999999887 456799999999998764
No 97
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=64.23 E-value=93 Score=31.98 Aligned_cols=110 Identities=17% Similarity=0.050 Sum_probs=66.7
Q ss_pred CchHHHHHHHHHHhcCCceEEEEec----CCccEEEEEEcCCCCCCCcEEEeeecccccCCCCCCCCCCCceeEeCCCCE
Q 013641 50 YTAPVSFLISQAQSIGLQFKTLEFV----PNKPILLLTWPGSDPSLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQ 125 (439)
Q Consensus 50 e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~ 125 (439)
-..++++..+++...|..++.+... -+-+.+.+.=+++. ..|.++...|..+-+... |+-..- .|.
T Consensus 208 p~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~-~pP~ll~lsY~g~~~~~~------~i~lvG---KGv 277 (513)
T KOG2597|consen 208 PTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASC-EPPRLLELSYKGTSGADK------TILLVG---KGV 277 (513)
T ss_pred HHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccC-CCCEEEEEEEcCCCCCcc------eEEEEe---cce
Confidence 3578899999999999777655321 12333444444543 235556666655543321 222111 233
Q ss_pred EEecCcc------------cchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCc
Q 013641 126 IFARGSQ------------DDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGG 172 (439)
Q Consensus 126 i~GrG~~------------D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~ 172 (439)
-|--|-. -+++|.|+++.+++++. +.+ ++.++.++++-.|-.-+
T Consensus 278 tfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~-~l~--~~in~~~v~plcENm~s 333 (513)
T KOG2597|consen 278 TFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAA-QLS--LPINVHAVLPLCENMPS 333 (513)
T ss_pred EEecCccccccCCChhhhhhhccccHHHHHHHHHHH-hcC--CCCceEEEEeeeccCCC
Confidence 3333321 22577899999999998 776 44899999998887644
No 98
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=62.34 E-value=23 Score=28.05 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhcccCCC-------------CCCCchhHHHHHHhHhcCcCCC--CCCCCchHHHHHHHHHHhcCCce
Q 013641 4 GRHMLLMLAAAILFSFTSSG-------------KSHEEREPITRFKQYLRFNTAH--PNPNYTAPVSFLISQAQSIGLQF 68 (439)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~l~~lv~ips~s--~~~~e~~~~~~l~~~l~~~G~~~ 68 (439)
.|++++++++++|.+|.+.+ .+.+.++. ..|-.+-++| ..+....+.+-|.+..++.|-+.
T Consensus 5 mk~~~~l~~~l~LS~~s~~~~~p~~~p~~~~~A~eI~~~qa----~~lq~iGtVSvs~~gsp~d~~~~La~KAda~GA~y 80 (104)
T PRK14864 5 MRRFASLLLTLLLSACSALQGTPQPAPPPADHAQEIRRAQT----QGLQKMGTVSALVRGSPDDAEREIQAKANAAGADY 80 (104)
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCCCCccccceecCHHHh----hCCceeeEEEEecCCCHHHHHHHHHHHHHHcCCCE
Confidence 45566666666666663322 22333333 3343443433 22456788888999999999988
Q ss_pred EEEEe
Q 013641 69 KTLEF 73 (439)
Q Consensus 69 ~~~~~ 73 (439)
.++..
T Consensus 81 YrIi~ 85 (104)
T PRK14864 81 YVIVM 85 (104)
T ss_pred EEEEE
Confidence 76643
No 99
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.25 E-value=2.1e+02 Score=29.91 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=73.1
Q ss_pred chhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcCCceEEEEecC------CccEEEEEEcCCC-CCCCcEEEeeec
Q 013641 28 EREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIGLQFKTLEFVP------NKPILLLTWPGSD-PSLPSILFNSHL 100 (439)
Q Consensus 28 ~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~------~~~nvi~~~~g~~-~~~~~vll~aH~ 100 (439)
.....++++++.++.-.. .. ....++...+++.|.+++.+.... ...||++.+++.. .+.-.++|
T Consensus 69 ~~~~~~~~~~~~~~r~~~--s~--~~~~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl---- 140 (617)
T KOG3566|consen 69 VSDASKLLKDIKNFRKHE--SQ--VPNAWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVL---- 140 (617)
T ss_pred hhhhHHHHHHHHHHHHhh--cc--cchhHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEE----
Confidence 344555566655555422 22 344558888999999988775421 1468888876432 23345555
Q ss_pred ccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHH
Q 013641 101 DSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFV 180 (439)
Q Consensus 101 Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 180 (439)
+||-+.. + |. | ..+++-++..++-++ +.. -..++|+++|+-++ ..|.++++
T Consensus 141 -~vP~~~~--------------~------~~-~-~~~v~l~lsla~~f~-r~~-yWsKDII~v~~d~~----~~g~~AwL 191 (617)
T KOG3566|consen 141 -VVPYGRS--------------S------GS-N-SASVALLLSLADYFS-RWV-YWSKDIIFVFTDGP----ALGLDAWL 191 (617)
T ss_pred -EEecccC--------------C------Cc-c-hhHHHHHHHHHHHhc-CCe-eecccEEEEEeCCc----cccHHHHH
Confidence 4554421 1 22 2 366666666667666 544 47899999999763 36888999
Q ss_pred hcc
Q 013641 181 ESN 183 (439)
Q Consensus 181 ~~~ 183 (439)
+.+
T Consensus 192 eaY 194 (617)
T KOG3566|consen 192 EAY 194 (617)
T ss_pred HHh
Confidence 864
No 100
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=53.91 E-value=1.7e+02 Score=30.08 Aligned_cols=126 Identities=14% Similarity=0.092 Sum_probs=69.2
Q ss_pred hHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcC-CceEEEEec----CCccEEEEEEcCCCCCCCcEEEeeeccccc
Q 013641 30 EPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIG-LQFKTLEFV----PNKPILLLTWPGSDPSLPSILFNSHLDSVP 104 (439)
Q Consensus 30 ~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G-~~~~~~~~~----~~~~nvi~~~~g~~~~~~~vll~aH~Dtvp 104 (439)
+.+.+-++|++.|.--- .=.+.++. ++.|++.+ +++++.+.. .+.+.+++.=+|+. ..|.++.. +=-+
T Consensus 168 ~~v~~aRdLvN~P~n~l--~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~-~~Prlivl---~y~g 240 (485)
T COG0260 168 EGVNLARDLVNTPANIL--TPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSA-RPPRLIVL---EYNG 240 (485)
T ss_pred HHHHHHHHHhhCCcccC--CHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCC-CCCeEEEE---EcCC
Confidence 34778889999998532 22455565 66666665 777765432 24555666655653 23444422 1111
Q ss_pred CCCCCCCCCCCceeEeCCCCEEEecCc---------ccc---hhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccC
Q 013641 105 AEPDKWSHPPFSAFHSPETGQIFARGS---------QDD---KCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIG 171 (439)
Q Consensus 105 ~~~~~w~~~Pf~~~~~~~dg~i~GrG~---------~D~---k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g 171 (439)
... ...|..+ +- -|.-|=-|- .+| .||.|+.+.++.++. +.+ ++.+|+.+....|-.-
T Consensus 241 ~~~---~~~~iaL-VG--KGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a-~l~--l~vnv~~vl~~~ENm~ 310 (485)
T COG0260 241 KGK---AKKPIAL-VG--KGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALA-ELK--LPVNVVGVLPAVENMP 310 (485)
T ss_pred CCC---CCceEEE-Ec--CceeecCCCcccCCccchhhhhcccchHHHHHHHHHHHH-HcC--CCceEEEEEeeeccCC
Confidence 110 0011110 00 112221111 122 477889999999998 765 6789999988888643
No 101
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=53.37 E-value=88 Score=30.86 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=45.3
Q ss_pred EcCCCCCCCcEEEeeecccccCCCCCCCCCCCceeEeCCCCEEEecCcccchhHHHHHHHHHHHHHHhcCCCCCeeEEEE
Q 013641 84 WPGSDPSLPSILFNSHLDSVPAEPDKWSHPPFSAFHSPETGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKPIRTVHAS 163 (439)
Q Consensus 84 ~~g~~~~~~~vll~aH~Dtvp~~~~~w~~~Pf~~~~~~~dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~ 163 (439)
++|. ....|+|.+|+..-.- +.|+-+|++.++..++.|+ +.. ...+..|+
T Consensus 124 ipG~--s~~EillsthiCHPsm-------------------------ANdnLSG~~v~~~La~~L~-~~~--~rytYRfl 173 (386)
T PF09940_consen 124 IPGE--SDEEILLSTHICHPSM-------------------------ANDNLSGPAVLTFLAKWLK-QLP--NRYTYRFL 173 (386)
T ss_dssp E--S--SS-EEEEEEE----S--------------------------TTTTHHHHHHHHHHHHHHT-TS----SSEEEEE
T ss_pred ecCC--CCCeEEEEEeccCccc-------------------------ccccccHHHHHHHHHHHHh-cCC--cCceEEEE
Confidence 3564 3589999999987433 2377899999999999999 554 44899999
Q ss_pred EecCcccCcccCHHHHHhcc--cccc-cceEEEE
Q 013641 164 YVPDEEIGGFDGMAKFVESN--EFRE-LNVGFVM 194 (439)
Q Consensus 164 ~~~~EE~g~~~G~~~~~~~~--~~~~-~~~~~v~ 194 (439)
|.| |+ .|+-.++.++ .+++ +...+++
T Consensus 174 f~P--eT---IGsI~yLskn~~~l~~~v~~G~vL 202 (386)
T PF09940_consen 174 FVP--ET---IGSITYLSKNLDELKKNVKAGLVL 202 (386)
T ss_dssp EE---TT---HHHHHHHHH-GGGGGG-EEEEEE-
T ss_pred Ecc--cc---HHHHHHHHHCHHHHhhheeeeEEE
Confidence 998 33 4555566543 3444 5556665
No 102
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=53.33 E-value=29 Score=34.57 Aligned_cols=76 Identities=11% Similarity=0.174 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHhCCCC----CccccccCCccHH-HHHHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 013641 352 SNPWWSVFKRAVTSAGGKL----GKPEILASTTDAR-YMRQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYES 426 (439)
Q Consensus 352 ~~~~~~~l~~a~~~~~~~~----~~~~~~~~~tD~~-~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~ 426 (439)
|...+..+++++++.+... ..-...+|+|-+. +..+.|++++=+|+... ..|++.|-....|+....+.|..
T Consensus 355 d~~~~a~~~~l~~~~~Vp~Q~f~~~~d~~~Gstigpi~aa~tGi~tIDiG~~~L---sMHS~rE~~g~~D~~~~~~~~~a 431 (437)
T COG1362 355 DSEGIALLRKLAQKAGVPWQVFVLRNDVPCGSTIGPILAARTGIRTIDIGPALL---SMHSIRELSGSADLYEAYKALSA 431 (437)
T ss_pred CchHHHHHHHHHHHcCCceEEEEecccCCCCcccchhHHhhcCCceeecchhhh---hhccHHHHcchhHHHHHHHHHHH
Confidence 6788889999998876432 1112334666665 44668999998898776 49999999999999999999988
Q ss_pred HHHH
Q 013641 427 VISS 430 (439)
Q Consensus 427 ~l~~ 430 (439)
++.+
T Consensus 432 Ff~~ 435 (437)
T COG1362 432 FFEN 435 (437)
T ss_pred HHhc
Confidence 8764
No 103
>PRK09929 hypothetical protein; Provisional
Probab=47.16 E-value=56 Score=25.17 Aligned_cols=64 Identities=17% Similarity=0.069 Sum_probs=34.6
Q ss_pred HHHHHHHhcccCCC-CCCCchhHHHHHHhHhcCcCCC--CCCCCchHHHHHHHHHHhcCCceEEEEe
Q 013641 10 MLAAAILFSFTSSG-KSHEEREPITRFKQYLRFNTAH--PNPNYTAPVSFLISQAQSIGLQFKTLEF 73 (439)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~i~~l~~lv~ips~s--~~~~e~~~~~~l~~~l~~~G~~~~~~~~ 73 (439)
+++++.++|+.+.+ .+.+.++.-..-..|-++-++| .......+.+-|.+..++.|-...++..
T Consensus 8 ~~~al~~lS~~A~AA~~i~~~qa~~~~~~l~kiGtVSvs~~~s~~d~~~~La~KAd~~GA~yY~Ii~ 74 (91)
T PRK09929 8 LLGALAFAVTNVYAAELMTKAEFEKVESQYEKIGTISTSNEMSTADAKEDLIKKADEKGADVLVLTS 74 (91)
T ss_pred HHHHHHHhchhhhhhhhhCHHHhhhhhcccceeEEEEEcCCCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 33444455554433 3344444322122333444433 2234566788899999999998776643
No 104
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=44.15 E-value=23 Score=35.46 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHHhCCCEEEEccCCCCCCCCCCCCCccchH-hHHHHHHHHHHHHHHhhcccCC
Q 013641 385 MRQLGIPVLGFSPMANTPILLHDHNEFLKDT-VFLKGVEVYESVISSLSSFVEP 437 (439)
Q Consensus 385 ~~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~-~l~~~~~~~~~~l~~~~~~~~~ 437 (439)
.+.+.+|++.+||.+.+ .|.+-|++... ++...=+++..++..+.+.+.+
T Consensus 501 i~~L~iP~iN~Gp~GkD---~HkwtERvy~PYsF~VLP~Lvs~t~~~fL~~~r~ 551 (553)
T COG4187 501 IQALNIPTINLGPWGKD---FHKWTERVYKPYSFEVLPELVSETTEAFLGDDRH 551 (553)
T ss_pred cccccCceeecccccCc---HHHHHHHhcCCcchhhhHHHHHHHHHHHhhhccc
Confidence 34578999999999885 99999998877 3444445666666666665543
No 105
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=43.42 E-value=71 Score=32.96 Aligned_cols=42 Identities=12% Similarity=-0.025 Sum_probs=32.8
Q ss_pred CceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEeeccc
Q 013641 293 SEAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEIIEKGP 336 (439)
Q Consensus 293 ~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 336 (439)
+.|++.+++|+++..+.+++.++++...+ ..+.++++....|
T Consensus 356 ~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~--~~g~~~~~~~~~p 397 (485)
T PRK15026 356 NNVEIHCLIRSLIDSGKDYVVSMLDSLGK--LAGAKTEAKGAYP 397 (485)
T ss_pred CEEEEEEEecCCCchHHHHHHHHHHHHHH--HcCcEEEEeCCCC
Confidence 67999999999999999999999987754 3355666554433
No 106
>PRK10259 hypothetical protein; Provisional
Probab=40.20 E-value=90 Score=23.81 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=33.4
Q ss_pred HHHHHHHHhcccCCC-CCCCchhHHHHHHhHhcCcCCC--CCCCCchHHHHHHHHHHhcCCceEEEEe
Q 013641 9 LMLAAAILFSFTSSG-KSHEEREPITRFKQYLRFNTAH--PNPNYTAPVSFLISQAQSIGLQFKTLEF 73 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~lv~ips~s--~~~~e~~~~~~l~~~l~~~G~~~~~~~~ 73 (439)
+..+++.+.||.+.+ .+.+.++. ..|-.+-++| ....-..+.+-|.+..++.|-+..++..
T Consensus 8 ~aa~~ls~~Sf~a~AA~~i~~~q~----~~l~kiG~VSvsg~~s~~d~~~~La~KAd~~GA~~YrIi~ 71 (86)
T PRK10259 8 VAAMALSTLSFGVFAAEPVTASQA----QNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITS 71 (86)
T ss_pred HHHHHHHHhhhhhcchhhhChHHh----cCCCcceEEEEecCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 333444444554433 33444443 3334444443 2123467777889999999998766543
No 107
>PRK10318 hypothetical protein; Provisional
Probab=38.17 E-value=87 Score=25.49 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcccCCCCCCCchhHHHHHHhHhcCcCCCC--CCCC---chHHHHHHHHHH
Q 013641 7 MLLMLAAAILFSFTSSGKSHEEREPITRFKQYLRFNTAHP--NPNY---TAPVSFLISQAQ 62 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~lv~ips~s~--~~~e---~~~~~~l~~~l~ 62 (439)
+.+++++++..+..++.+....++.++.|..+++-..... ++.+ .++++.|+..++
T Consensus 4 ~~~l~~lL~~~~~~~~~~~~~~~~ei~~L~~~~~~s~c~FiRNG~~h~~~eA~~HLr~K~~ 64 (121)
T PRK10318 4 LCLLITLLFTLPAYAKLTAHEEARINAMLEGLAQKKDCTFVRNGDEHTCKEAVSHLRLKLG 64 (121)
T ss_pred HHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHhcCCCEEEECCCcCCHHHHHHHHHHHHH
Confidence 3344455555555666666777888999999987555431 3333 577888888877
No 108
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=37.68 E-value=2.4e+02 Score=29.31 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCcccCcccCHHHHHhcc
Q 013641 135 KCIAIQYIEAIRNLILVKNFKPIRTVHASYVPDEEIGGFDGMAKFVESN 183 (439)
Q Consensus 135 k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 183 (439)
..+++.+|..++.++ +... +.++|+|+++.+|. .|++++++++
T Consensus 36 ~~~v~l~lal~~~~~-~~~~-wsKDii~l~~~~~~----~g~~awl~~Y 78 (504)
T PF04114_consen 36 AGGVALALALARYFR-RQSY-WSKDIIFLFTDDEL----AGMQAWLEAY 78 (504)
T ss_pred hhhHHHHHHHHHHhh-hchh-hhccEEEEecCCcc----hHHHHHHHHH
Confidence 688999999999999 7765 68999999986542 5888999864
No 109
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=35.89 E-value=62 Score=26.85 Aligned_cols=56 Identities=9% Similarity=0.176 Sum_probs=33.6
Q ss_pred HHHHHHHHhcccCCCCC-------CCchhHHHHHHhHhcCcCCCCCC--CCchHHHHHHHHHHhc
Q 013641 9 LMLAAAILFSFTSSGKS-------HEEREPITRFKQYLRFNTAHPNP--NYTAPVSFLISQAQSI 64 (439)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-------~~~~~~i~~l~~lv~ips~s~~~--~e~~~~~~l~~~l~~~ 64 (439)
++.+.+++.+|...+.. ++.-.+++.++..+..|.-+++. .+.++.+.+.+|+.++
T Consensus 15 ~L~~~l~l~~c~~~~~~~Ltg~Y~~DT~~Vi~tlr~~i~lpkd~p~~~~a~~~ar~~indyvsrY 79 (135)
T TIGR03044 15 VLGLCLLLTACSGAAKTRLTGDYVEDTLAVIQTLREAIDLPDDDPNKSEAQAEARQLINDYISRY 79 (135)
T ss_pred HHHHHHHHhcccCCCcccccchHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 33344555566533322 45667788888888888775322 2445666677776664
No 110
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=31.72 E-value=62 Score=32.82 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHHhCCCC----CccccccCCccHHHH-HHhCCCEEEEccCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 013641 352 SNPWWSVFKRAVTSAGGKL----GKPEILASTTDARYM-RQLGIPVLGFSPMANTPILLHDHNEFLKDTVFLKGVEVYES 426 (439)
Q Consensus 352 ~~~~~~~l~~a~~~~~~~~----~~~~~~~~~tD~~~~-~~~gip~v~~Gp~~~~~~~~H~~nE~i~~~~l~~~~~~~~~ 426 (439)
|..-...+++.+++..... .+-....|+|-++.+ .++|+++|=+|.... ..|++.|-....|+....++|..
T Consensus 354 d~~~~a~~~~i~~~~~ip~Q~f~~r~d~~~GsTiGpi~sa~~gi~tvDiG~P~L---sMHS~rE~~g~~D~~~~~~~~~a 430 (432)
T PF02127_consen 354 DAASAAVFREICEKAGIPWQEFVNRSDDPGGSTIGPILSARLGIRTVDIGIPQL---SMHSIRETAGKKDIYYLYKAFKA 430 (432)
T ss_dssp -HHHHHHHHHHHHHHH--EEEEESSSTSSS--HHHHHHHHCCTSEEEEEE-EEE---STTSSSEEEEHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCCCCCccHHHHHHHhcCCCEEEechhhh---hcccHHHHhccccHHHHHHHHHH
Confidence 4566677777777665321 122334567777766 567999998887665 49999999999999999998876
Q ss_pred H
Q 013641 427 V 427 (439)
Q Consensus 427 ~ 427 (439)
+
T Consensus 431 F 431 (432)
T PF02127_consen 431 F 431 (432)
T ss_dssp H
T ss_pred h
Confidence 5
No 111
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=24.10 E-value=1.4e+02 Score=27.99 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCCchHHH-HHHHHHHhcCCceEEEEecC
Q 013641 48 PNYTAPVS-FLISQAQSIGLQFKTLEFVP 75 (439)
Q Consensus 48 ~~e~~~~~-~l~~~l~~~G~~~~~~~~~~ 75 (439)
..+.+..+ +.+..+++.|++.+..++.+
T Consensus 38 ~p~a~ile~~~k~~~~k~Gi~l~i~~FtD 66 (268)
T COG1464 38 GPHAEILEVVVKPALKKKGLDLKIVEFTD 66 (268)
T ss_pred CchHHHHHHHHHHHHHhcCceEEEEEecC
Confidence 34456666 78888899999999887753
No 112
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=23.62 E-value=3.2e+02 Score=20.43 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=30.7
Q ss_pred ceEEEEeeecCCCCCHHHHHHHHHHHhcccCCCceEEEe
Q 013641 294 EAEAGFDARLPPTVDPDLIRRRIAEEWAPAIRNMSYEII 332 (439)
Q Consensus 294 ~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 332 (439)
+|++++-+|..++.+..++.+.|.+.+.......+.++.
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 588999999999999999999999888743334444444
No 113
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=23.52 E-value=77 Score=31.73 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=36.2
Q ss_pred CCCchHHHHHHHHHHhcCCceEE----EE--------ecCCccEEEEEEcCCCC--CCCcEEEeeecccc
Q 013641 48 PNYTAPVSFLISQAQSIGLQFKT----LE--------FVPNKPILLLTWPGSDP--SLPSILFNSHLDSV 103 (439)
Q Consensus 48 ~~e~~~~~~l~~~l~~~G~~~~~----~~--------~~~~~~nvi~~~~g~~~--~~~~vll~aH~Dtv 103 (439)
+-+..+..++++.|.+.||.--. +. .+-+..+|+|.+-|.++ ..+--++.+|.|.-
T Consensus 21 pTpyh~v~~i~~~L~~~Gf~~l~e~~~w~~~~ggkyf~~r~gssliAf~ig~~~~~~~gf~IigaHtDSP 90 (437)
T COG1362 21 PTPYHVVANIAERLLKAGFRELEEKDAWKDKPGGKYFVTRNGSSLIAFIIGKKWKLESGFRIIGAHTDSP 90 (437)
T ss_pred CChHHHHHHHHHHHHHcCchhhhhhhcccccCCCeEEEEcCCceEEEEEecCCCCCCCCeEEEEeecCCC
Confidence 44578888899999999986321 11 11123478887777653 33455778899876
No 114
>PF02127 Peptidase_M18: Aminopeptidase I zinc metalloprotease (M18); InterPro: IPR001948 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M18, (clan MH). The proteins have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal aminoacid, usually neutral or hydrophobic, from a polypeptide []. The type example is aminopeptidase I from Saccharomyces cerevisiae (Baker's yeast), the sequence of which has been deduced, and the mature protein shown to consist of 469 amino acids []. A 45-residue presequence contains both positively- and negatively-charged and hydrophobic residues, which could be arranged in an N-terminal amphiphilic alpha-helix []. The presequence differs from signal sequences that direct proteins across bacterial plasma membranes and endoplasmic reticulum or into mitochondria. It is unclear how this unique presequence targets aminopeptidase I to yeast vacuoles, and how this sorting utilises classical protein secretory pathways [].; GO: 0004177 aminopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1Y7E_A 2GLJ_R 4DYO_A 2IJZ_B 3VAT_A 3VAR_A 2GLF_B.
Probab=23.28 E-value=1.6e+02 Score=29.93 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=30.6
Q ss_pred CCEEEecCcccchhHHHHHHHHHHHHHHhcCCCC-CeeEEEEEecCcccCc
Q 013641 123 TGQIFARGSQDDKCIAIQYIEAIRNLILVKNFKP-IRTVHASYVPDEEIGG 172 (439)
Q Consensus 123 dg~i~GrG~~D~k~~~aa~l~a~~~l~~~~~~~~-~~~i~~~~~~~EE~g~ 172 (439)
+..|.+.+- |+..++-+.|.|+.... +....+ ...-++++.--||+|+
T Consensus 226 ~efI~s~rl-Dnl~s~~a~l~Al~~~~-~~~~~~~~~~~v~~~fD~EEiGS 274 (432)
T PF02127_consen 226 EEFISSPRL-DNLASCYAALEALIDSS-NDSLEPEDGTNVVVLFDNEEIGS 274 (432)
T ss_dssp TSEEEETTH-HHHHHHHHHHHHHHHHT-SSCCCCSSSEEEEEEESSGGGTS
T ss_pred hhhhhccCc-CcHHHHHHHHHHHHhhh-cccccccCceEEEEEEcccccCC
Confidence 455666554 88888888888876654 321222 3555566666799885
No 115
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=23.09 E-value=6e+02 Score=24.57 Aligned_cols=31 Identities=13% Similarity=0.014 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCeeEEEEEec
Q 013641 133 DDKCIAIQYIEAIRNLILVKNFKPIRTVHASYVP 166 (439)
Q Consensus 133 D~k~~~aa~l~a~~~l~~~~~~~~~~~i~~~~~~ 166 (439)
|+-+|+|.+...+++|+ .. +...+-.|+|.|
T Consensus 195 dn~SG~all~~lak~l~-~~--ktrysYRfvf~P 225 (435)
T COG4310 195 DNLSGLALLTFLAKALK-SL--KTRYSYRFVFAP 225 (435)
T ss_pred CccchHHHHHHHHHHHH-hc--cceeeEEEEecc
Confidence 66788998888889998 44 356788888888
No 116
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=22.88 E-value=60 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=16.7
Q ss_pred CcchhhHHHHHHHHHHhcccCCCCCC
Q 013641 1 MAAGRHMLLMLAAAILFSFTSSGKSH 26 (439)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (439)
|+++-.+.++++..+++++..+....
T Consensus 1 M~~k~lS~~lL~caLFSGqllA~~~G 26 (76)
T PF10829_consen 1 MFKKGLSALLLICALFSGQLLAGHQG 26 (76)
T ss_pred ChHHHHHHHHHHHHHhcchHHhccCC
Confidence 66655565666666777777665553
No 117
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=22.82 E-value=2e+02 Score=17.98 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=24.1
Q ss_pred CchhHHHHHHhHhcCcCCCCCCCCchHHHHHHHHHHhcC
Q 013641 27 EEREPITRFKQYLRFNTAHPNPNYTAPVSFLISQAQSIG 65 (439)
Q Consensus 27 ~~~~~i~~l~~lv~ips~s~~~~e~~~~~~l~~~l~~~G 65 (439)
+..+++.=++.-+..|.+| .++.+.-++.|+++|
T Consensus 2 ~~~~V~~G~KAal~NPnvS-----eeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 2 DPNNVAGGYKAALHNPNVS-----EEAKQHAREKLEEMG 35 (36)
T ss_pred cHHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHHHcc
Confidence 3456677788888999997 455666667777664
No 118
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=21.67 E-value=1.3e+02 Score=25.89 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=24.7
Q ss_pred cccCCccHHHHHHhCCCEEEEccCCCCCCCCCCCCCccc
Q 013641 375 ILASTTDARYMRQLGIPVLGFSPMANTPILLHDHNEFLK 413 (439)
Q Consensus 375 ~~~~~tD~~~~~~~gip~v~~Gp~~~~~~~~H~~nE~i~ 413 (439)
.....+|...|...|+|++.+..........|++.-.++
T Consensus 133 ~~~~~sD~~~F~~~gip~~~~~~~~~~~~~~Ht~~Dt~~ 171 (179)
T PF04389_consen 133 PTFGGSDHYPFSKAGIPAVTLSSTDGYNPYYHTPEDTPD 171 (179)
T ss_dssp SSTTSSTCHHHHTTT-EEEEEEESSSSGTTTTSTT-SGG
T ss_pred CCCCCCCcHhhhcCCEeEEEEEecCCCCCCCCCcccChh
Confidence 344678987777889999966554412247888874433
Done!