BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013643
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G V LL++ D NA D DG T LH A + + LL + A+P D DG
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LHYA + +K+LL D N +D+DG TPLH A + +IVKLLL KGAD
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
+ DG TPLDL G + ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----IVKLLEK 157
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 61/121 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V LL D NA D DG T LH A + + LL + A+P
Sbjct: 40 PLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 99
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D DG T LHYA + +K+LL D N D+DG TPL LA + +IVKLL +G
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Query: 400 A 400
Sbjct: 160 G 160
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + + +K LL D N D+DG TPLH A + +IVKLLL KGAD K+ DG
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 410 LTPLDLCLYSGRDTRTFGMIKLL 432
TPL +G ++KLL
Sbjct: 71 RTPLHYAAENGHKE----IVKLL 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G V LL++ D+NA D DG T LH A + V LL + A+P D DG
Sbjct: 12 AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A + +K+LL D N +D+DG TPLHLA + ++VKLLL +GAD
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
+ DG TPLDL G + ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----VVKLLEK 157
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 60/121 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V LL D NA D DG T LH A + V LL + A+P
Sbjct: 40 PLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 99
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D DG T LH A + +K+LL D N D+DG TPL LA + ++VKLL +G
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Query: 400 A 400
Sbjct: 160 G 160
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + + +K LL D+N D+DG TPLHLA + ++VKLLL +GAD K+ DG
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 410 LTPLDLCLYSGR 421
TPL L +G
Sbjct: 71 KTPLHLAAENGH 82
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G V L+++ D+NA D DG T LH A + V L+ + A+ D DG
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH+A + +K+L+ D+N +D+DG TPLH A + ++VKLL+ KGAD
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
+ DG TPLDL G + ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----VVKLLEK 157
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 62/121 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V L+ D+NA D DG T LH A + V L+ + A+
Sbjct: 40 PLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 99
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D DG T LH+A + +K+L+ D+N D+DG TPL LA + ++VKLL +G
Sbjct: 100 DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Query: 400 A 400
Sbjct: 160 G 160
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + + +K L+ D+N D+DG TPLH A + ++VKLL+ KGAD K+ DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 410 LTPLDLCLYSGR 421
TPL +G
Sbjct: 71 RTPLHHAAENGH 82
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G V L+++ D+NA D DG T LH A + + L+ + A+ D DG
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LHYA + +K+L+ D+N +D+DG TPLH A + +IVKLL+ KGAD
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
+ DG TPLDL G + ++KLL++
Sbjct: 132 SDSDGRTPLDLAREHGNEE----IVKLLEK 157
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 61/121 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V L+ D+NA D DG T LH A + + L+ + A+
Sbjct: 40 PLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D DG T LHYA + +K+L+ D+N D+DG TPL LA + +IVKLL +G
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Query: 400 A 400
Sbjct: 160 G 160
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + + +K L+ D+N D+DG TPLH A + +IVKLL+ KGAD K+ DG
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 410 LTPLDLCLYSG 420
TPL G
Sbjct: 71 RTPLHYAAKEG 81
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 73/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
D AT +H A + I ILL Y N+QD +G TPLHLA R + KLL+
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 398 KGADKTLKNRDGLTPLDL 415
+GA ++N++ TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 317 AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
A GK + + +L + + D+D T LH+A + ++ LL V +N +D+ G
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 377 WTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
W+PLH+A A R +IVK LL KGA N++G TPL
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 110
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
D D T LH A A T+IV+ LL G K+ G +PL + +GRD
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 86
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 73/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
D AT +H A + I ILL Y N+QD +G TPLHLA R + KLL+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 398 KGADKTLKNRDGLTPLDL 415
+GA ++N++ TPL +
Sbjct: 195 QGASIYIENKEEKTPLQV 212
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 317 AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
A GK + + +L + + D+D T LH+A + ++ LL V +N +D+ G
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 377 WTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
W+PLH+A A R +IVK LL KGA N++G TPL
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL 111
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
D D T LH A A T+IV+ LL G K+ G +PL + +GRD
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 87
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
D AT +H A + + ILL Y N+QD +G TPLHLA R + K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 398 KGADKTLKNRDGLTPLDL 415
+GA ++N++ TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%)
Query: 317 AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
A GK + +L + + D+D T LH+A + ++ LL V +N +D+ G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 377 WTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
W+PLH+A A R +IVK LL+KGA N++G TPL
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPL 110
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
D D T LH A A T+IV+ LL G K+ G +PL + +GRD
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 86
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
D AT +H A + + ILL Y N+QD +G TPLHLA R + K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 398 KGADKTLKNRDGLTPLDL 415
+GA ++N++ TPL +
Sbjct: 194 QGASIYIENKEEKTPLQV 211
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 317 AIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376
A GK + +L + + D+D T LH+A + ++ LL V +N +D+ G
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 377 WTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
W+PLH+A A +IVK LL+KGA N++G TPL
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL 110
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
D D T LH A A T+IV+ LL G K+ G +PL + +G D
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD 86
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+ D+DG
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A + +++LL D+N +D DG+TPLHLA + +IV++LL GAD
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G TP DL + G +
Sbjct: 130 QDKFGKTPFDLAIREGHE 147
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 60/118 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D+DG T LH A + +++LL D+N QD G TP LA++ DI ++L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N +D DG+TPLHLA + +IV++LL GAD K++DG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 69 YTPLHLAAREGH 80
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+ D+DG
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 69
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A + +++LL D+N +D DG+TPLHLA + +IV++LL GAD
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G TP DL + +G +
Sbjct: 130 QDKFGKTPFDLAIDNGNE 147
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 59/118 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D+DG T LH A + +++LL D+N QD G TP LA+ DI ++L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N +D DG+TPLHLA + +IV++LL GAD K++DG
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 69 YTPLHLAAREGH 80
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
AA+G+ V L+ + D+NA D +GLT LH A + + LL+ A+ D G
Sbjct: 14 AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGI 73
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL + D+N D GWTPLHLA + + +IV++LL GAD
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 405 KNRDGLTPLDLCLYSGRD 422
++ GLT D+ + G++
Sbjct: 134 QDALGLTAFDISINQGQE 151
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH AA+G+ V+ LLK+ D+NA D G+T LH A + LL+ A+
Sbjct: 42 PLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D G T LH A + +++LL + D+N QD G T +++ + D+ ++L
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
W PLH A SG+ V+ LLKH D+NA D GLTA +I
Sbjct: 106 WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISI 146
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 383 AVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
A A + D V++L+ GAD + +GLTPL L +G+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQ 51
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 71/151 (47%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
A T K + PLH A G+ + LL+ + NA K+GLT LH A+ + LL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 331 RESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD 390
+P +G T LH A + + LL Y N + G TPLHLA Q +
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 391 IVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
+V LLL K A+ L N+ GLTPL L G
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 61/137 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V LL + N +K GLT LH V + L++
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
G T LH A + +K LL + D+N + G++PLH A Q TDIV LLL G
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 400 ADKTLKNRDGLTPLDLC 416
A + DG TPL +
Sbjct: 368 ASPNEVSSDGTTPLAIA 384
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 3/158 (1%)
Query: 267 LPHLATATSKKW---LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQ 323
LP + S W PLH A + +LL++ NA G+T LH A
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 324 AVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA 383
+ LL + AN + ++ G T LH Q P +L+ + V ++ G+TPLH+A
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318
Query: 384 VQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
+VK LL AD K + G +PL G
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI-IGKKQAVTNYLLRESANPFV 338
PLH A +G LL++ +NA KD T LH A IG V LL +ANP +
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV-KLLLENNANPNL 108
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
G T LH A + + LL G+TPLH+A + + + +LLL +
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 399 GADKTLKNRDGLTPLDLCLY 418
A ++GLTPL + ++
Sbjct: 169 DAHPNAAGKNGLTPLHVAVH 188
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 61/142 (42%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH + G V LL+ N + T LH A V YLL+ A
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
+D T LH A + + +K+LL N + NL G TPLH+A + + V LL K
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136
Query: 400 ADKTLKNRDGLTPLDLCLYSGR 421
A + + G TPL + G+
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGK 158
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%)
Query: 311 LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDIN 370
LT LH A + LL+ A+P V + T LH A + + K LL +N
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK 430
+ D TPLH A + T++VKLLL A+ L G TPL + G +++
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH +A G D L+KH V ++A + G T LH A + +LL+ A+
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ---ARRTDIVKLL 395
+ G + LH A Q + + +LL N +DG TPL +A + TD++K++
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%)
Query: 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES 333
T + PLH + G V LL+H D+NA K G + LH+A + LL+
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 334 ANPFVVDEDGATLLHYA 350
A+P V DG T L A
Sbjct: 368 ASPNEVSSDGTTPLAIA 384
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 75/136 (55%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+ D+DG
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A + +++LL D+N +D DG+TPLHLA + +IV++LL GAD
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 405 KNRDGLTPLDLCLYSG 420
+++ G T D+ + +G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 48 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D+DG T LH A + +++LL D+N QD G T +++ D+ ++L
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N +D DG+TPLHLA + +IV++LL GAD K++DG
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 81 YTPLHLAAREGH 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 73/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D DG T LH A + LL+ A+ D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A T +++LL + D+N DNDG TPLHLA + +IV++LL GAD
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
+ PLH A++G V+ LLK+ D+NA D G+T LH A + LL+ A+
Sbjct: 48 YTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D DG T LH A + +++LL + D+N QD G T +++ D+ ++L
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N DNDG+TPLHLA +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 410 LTPLDLCLYSGR 421
+TPL L +G
Sbjct: 81 ITPLHLAAATGH 92
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 64/121 (52%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V LL+ D+NA DK+G T LH A V LL A+
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D++G T LH A + +K+LL D+N +D +G TPLHLA + ++VKLLL G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 400 A 400
A
Sbjct: 125 A 125
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 60/112 (53%)
Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
+G T LH A V LL A+ D++G T LH A + +K+LL D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
+N +D +G TPLHLA + ++VKLLL GAD K+++G TPL L +G
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NAVD GLT LH A + + LL+ A+ D G
Sbjct: 22 ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A T +++LL Y D+N D G TPLHLA +IV++LL GAD
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 55/114 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A SG V+ LLKH D++A D G T LH A + + LL+ A+
Sbjct: 50 PLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF 109
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
D G+T LH A +++LL Y D+N QD G T +++ D+ K
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N DN G TPLHLA + +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 410 LTPLDLCLYSGR 421
TPL L +G
Sbjct: 81 FTPLHLAAMTGH 92
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
L +H LAA GE ++ ++ IN D++G T L A + AV +LL+ A+P +
Sbjct: 21 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 80
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
+ + + L A + +K+LL VD+N D +G TPL AV VK+LL
Sbjct: 81 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
Query: 399 GADKTLKNRDGLTPLDLCLYSG 420
GAD T++ G +DL + G
Sbjct: 141 GADPTIETDSGYNSMDLAVALG 162
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 1/162 (0%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
L +H LAA GE ++ ++ IN D++G T L A + AV +LL+ A+P +
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
+ + + L A + +K+LL VD+N D +G TPL AV VK+LL
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
Query: 399 GADKTLKNRDGLTPLDLCLYSG-RDTRTFGMIKLLKQLPTSK 439
GAD T++ G +DL + G R + LLK L K
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
L +H LAA GE ++ ++ IN D++G T L A + AV +LL+ A+P +
Sbjct: 3 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 62
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
+ + + L A + +K+LL VD+N D +G TPL AV VK+LL
Sbjct: 63 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
Query: 399 GADKTLKNRDGLTPLDLCLYSG 420
GAD T++ G +DL + G
Sbjct: 123 GADPTIETDSGYNSMDLAVALG 144
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 70/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G T LH A + LL+ A+ D DG
Sbjct: 22 ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL Y D+N QD G TPLHLA +IV++LL GAD
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N D+ G TPLHLA +IV++LL GAD ++ DG
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 410 LTPLDLCLYSGR 421
TPL L +G
Sbjct: 81 WTPLHLAADNGH 92
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
+ W PLH A +G V+ LLK+ D+NA D GLT LH A + LL+ A
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKIL 362
+ D+ G T ++ + +IL
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G+T LH + + LL+ +A+ D+ G
Sbjct: 22 ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL Y D+N D G+TPLHLA + +IV++LL GAD
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 271 ATATSKKWL---PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTN 327
A + W PLH + +G ++ LLK+ D+NA DK G T LH A +
Sbjct: 38 ADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVE 97
Query: 328 YLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR 387
LL+ A+ +D G T LH A + +++LL Y D+N QD G T +++
Sbjct: 98 VLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 388 RTDIVKLL 395
D+ ++L
Sbjct: 158 NEDLAEIL 165
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N D G TPLHL V +I+++LL AD ++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 410 LTPLDLCLYSGR 421
TPL L Y G
Sbjct: 81 WTPLHLAAYRGH 92
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G T LH A I + LL+ A+ D+ G
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL D+N D G+TPLHLA A +IV++LL GAD
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLKH D+NA DK G T LH A + + LL+ A+
Sbjct: 50 PLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D G T LH A +++LL Y D+N QD G T +++ D+ ++L
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N +D+ G TPLHLA +IV++LL GAD ++ G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 81 DTPLHLAALYGH 92
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 6/159 (3%)
Query: 263 LNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK 322
+N K+ H K PLH+ A +G L++ +I+ +D T L +A
Sbjct: 2 MNFKMEH-----QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH 56
Query: 323 QAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLH 381
YL++ A D +G+T LH A + ++ LL +D+N QD+ GWTP+
Sbjct: 57 LEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 382 LAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
A + + D+VKLLL KG+D +++ + L +SG
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG 155
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH A G + V LL + +D+N D G T + A K + LL + ++ +
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR 140
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D + LH+A + +ILL D++ + G +PLH+A + R D V L L +
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438
+D TLKN++G TPL + +++ + +++ K L S
Sbjct: 201 SDVTLKNKEGETPLQC---ASLNSQVWSALQMSKALQDS 236
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D GLT LH A + LL+ A+ +D G+
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL + D+N D G TPLHLA +IV++LL GAD
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLKH D+NA+D G T LH A + + LL+ A+ V
Sbjct: 50 PLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D G T LH A +++LL + D+N QD G T +++ D+ ++L
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N D G TPLHLA +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 81 STPLHLAALIGH 92
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G T LH A + LL+ A+ D G
Sbjct: 22 ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGY 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL D+N D+DG TPLHLA + +IV++LL GAD
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A SG V+ LLKH D++A D G T LH A + LL+ A+ +
Sbjct: 50 PLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D DG T LH A + +++LL + D+N QD G T +++ D+ ++L
Sbjct: 110 DSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N DN G TPLHLA + +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 410 LTPLDLCLYSGR 421
TPL L Y G
Sbjct: 81 YTPLHLAAYWGH 92
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
+ PLH A G V+ LLK+ D+NA+D DG+T LH A + LL+ A+
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Query: 338 VVDEDGATLLHYAVQTASSPAIKIL 362
D+ G T ++ + +IL
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D GLT LH A + LL+ A+ +D G+
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL + D+N D G TPLHLA +IV++LL GAD
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLKH D+NA+D G T LH A + + LL+ A+ V
Sbjct: 50 PLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D G T LH A +++LL + D+N QD G T +++ D+ ++L
Sbjct: 110 DTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N D G TPLHLA +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 81 STPLHLAALIGH 92
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D NA D G T LH A + LLR A+ VD +G
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL Y D+N +D G TPL+LA +IV++LL GAD
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + G +
Sbjct: 130 QDKFGKTAFDISIDIGNE 147
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D N D+ G TPLH+A +IV++LL GAD + +G
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 69 TTPLHLAASLGH 80
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
L AA G+ V LL V +A+++ G TAL + G A+ LL++ A+P V
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGASPNVQ 64
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D G + +H A +T +K+L+ + D+N+ D G P+HLAVQ T +V L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---A 121
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
A+ L RD GLTPL+L L G
Sbjct: 122 AESDLHRRDARGLTPLELALQRG 144
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 34/116 (29%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
P+H A +G + L++H D+N D G +H A+ AV ++L ES
Sbjct: 71 PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES------ 124
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D++ +D G TPL LA+Q D+V +L
Sbjct: 125 ----------------------------DLHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
L AA G+ V LL V +A+++ G TAL + G A+ LL++ A+P V
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGASPNVQ 70
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D G + +H A +T +K+L+ + D+N+ D G P+HLAVQ T +V L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL---A 127
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
A+ L RD GLTPL+L L G
Sbjct: 128 AESDLHRRDARGLTPLELALQRG 150
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 34/116 (29%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
P+H A +G + L++H D+N D G +H A+ AV ++L ES
Sbjct: 77 PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES------ 130
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D++ +D G TPL LA+Q D+V +L
Sbjct: 131 ----------------------------DLHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G T LH A + LL+ A+ D GA
Sbjct: 22 ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL + D+N +D +G+TPLHLA +IV++LL GAD
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N D G TPLHLA + +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 410 LTPLDLCLYSGR 421
TPL L +G
Sbjct: 81 ATPLHLAADNGH 92
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V+ LLKH D+NA D +G T LH A + LL+ A+
Sbjct: 83 PLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQ 142
Query: 340 DEDGATLLHYAVQTASSPAIKIL 362
D+ G T ++ + +IL
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G T LH A + LL+ A+ D G
Sbjct: 22 ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A +++LL D+N D++G+TPLHLA +IV++LL GAD
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH A G V+ LLK+ D+NA D G+T LH A V LL+ A+
Sbjct: 48 WTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D +G T LH A +++LL + D+N QD G T +++ D+ ++L
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N D+ GWTPLHLA +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 410 LTPLDLCLYSGR 421
+TPL L G
Sbjct: 81 VTPLHLAADRGH 92
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G T LH A + LL+ A+ +D G+
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A + +++LL Y D+N D G TPLHLA +IV++LL GAD
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 57/116 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLK+ D+NA+D G T LH A + LL+ A+
Sbjct: 50 PLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D G+T LH A T +++LL Y D+N QD G T +++ D+ ++L
Sbjct: 110 DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N +D G TPLHLA + +IV++LL GAD + G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 410 LTPLDLCLYSGR 421
TPL L G
Sbjct: 81 STPLHLAAKRGH 92
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
V L+ + D+NA D G T LH A + LL+ A+ D G+T LH A
Sbjct: 30 VRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAH 89
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
+++LL D+N +D++G TPLHLA +IV++LL GAD +++ G T
Sbjct: 90 FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 413 LDLCLYSGRD 422
D+ + +G +
Sbjct: 150 FDISINNGNE 159
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH A G V+ LLK+ D+NA D G T LH A + LL+ A+
Sbjct: 48 WTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D++G T LH A +++LL Y D+N QD G T +++ D+ ++L
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N D GWTPLHLA +IV++LL GAD + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 410 LTPLDLCLYSGR 421
TPL L + G
Sbjct: 81 STPLHLAAHFGH 92
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D G T LH A + LL+ A+ D G
Sbjct: 22 ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404
T LH A + +++LL D+N D+ G+TPLHLA + +IV++LL GAD
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 405 KNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 142 QDKFGKTAFDISIDNGNE 159
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH A G V+ LLK+ D+NA D G+T LH A + LL+ A+
Sbjct: 48 WTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
D G T LH A + +++LL D+N QD G T +++ D+ ++L
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N +D GWTPLHLA +IV++LL GAD K+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 410 LTPLDLCLYSGR 421
+TPL L G
Sbjct: 81 VTPLHLAARRGH 92
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
S + PLH A G V+ LLK+ D+NA DK G TA +I
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
V L+ + D+NA D G T LH A + LL+ A+ VD G T L A
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
+++LL D+N D +G TPLHLA +IV++LL GAD +++ G T
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 413 LDLCLYSGRD 422
D+ + +G +
Sbjct: 150 FDISIDNGNE 159
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
+ W PLH A +G V+ LLK+ D+NAVD G+T L A + + LL+ A
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
+ D +G T LH A +++LL D+N QD G T +++ D+ ++
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 395 L 395
L
Sbjct: 165 L 165
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409
A + ++IL+ D+N +D GWTPLHLA +IV++LL GAD + G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 410 LTPLDLCLYSGR 421
+TPL L G
Sbjct: 81 MTPLRLAALFGH 92
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 6/162 (3%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH G V L+K+ D + +D +G + +H A ++ YL+ + + ++
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 340 DEDGAT-LLHYAVQTASSPAIKILLLYNVDINLQDN-DGWTPLHLAVQARRTDIVKLLLI 397
D++G T L+ A +T S ++LL +NV +NL D T LH AV A T ++ LLL
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 398 KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTSK 439
GA+ +N G + LDL + + MI L++ +K
Sbjct: 199 AGANVDAQNIKGESALDLA----KQRKNVWMINHLQEARQAK 236
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATL----LHYAV 351
L++ D+ DK+ +T LH A I + + Y + + A +VD+ G L LH+A
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA---IVDQLGGDLNSTPLHWAT 84
Query: 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLT 411
+ + L+ Y D +L D +G + +HLA Q T IV L+ KG D + +++G+T
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144
Query: 412 PLDLCLY 418
PL Y
Sbjct: 145 PLMWAAY 151
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 1/143 (0%)
Query: 279 LPLHSLAASGEF-YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
L +H LAA GE + L K + +N D+ G T L A + +LL A+P
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
++ ++ + L A + + +LL +VDIN+ D +G TPL AV+ V+ LL
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 398 KGADKTLKNRDGLTPLDLCLYSG 420
+GAD T + G TP+DL + G
Sbjct: 124 RGADLTTEADSGYTPMDLAVALG 146
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 1/143 (0%)
Query: 279 LPLHSLAASGEF-YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
L +H LAA GE + L K + +N D+ G T L A + +LL A+P
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
++ ++ + L A + + +LL +VDIN+ D +G TPL AV V+ LL
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLA 123
Query: 398 KGADKTLKNRDGLTPLDLCLYSG 420
+GAD T + G TP+DL + G
Sbjct: 124 RGADLTTEADSGYTPMDLAVALG 146
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 303 INAVDKDGL--TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
+N D +G T LH A + +V YLL+ A+ D+ G LH A +
Sbjct: 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
+L+ + +N+ D +TPLH A + +I KLLL GAD T KNRDG TPLDL
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
+PLH+ + G + + L+KH +N D T LH+A K + LL+ A+P
Sbjct: 77 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136
Query: 339 VDEDGAT 345
+ DG T
Sbjct: 137 KNRDGNT 143
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
K+ PLH AA G++ LL+H D ++DG T L
Sbjct: 108 KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 66.2 bits (160), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 54/94 (57%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ +DEDG T LH A Q +++LL Y D+N +DN G TPLHLA
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
+IV++LL GAD +++ G T D+ + +G +
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLK+ D+NA D G+T LH A I + LL+ A+
Sbjct: 50 PLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
Query: 340 DEDGATLLHYAVQTASSPAIKIL 362
D+ G T ++ + +IL
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 303 INAVDKDGL--TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
+N D +G T LH A + +V YLL+ A+ D+ G LH A +
Sbjct: 35 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
+L+ + +N+ D +TPLH A + +I KLLL GAD T KNRDG TPLDL
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
+PLH+ + G + + L+KH +N D T LH+A K + LL+ A+P
Sbjct: 79 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 138
Query: 339 VDEDGAT 345
+ DG T
Sbjct: 139 KNRDGNT 145
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
K+ PLH AA G++ LL+H D ++DG T L
Sbjct: 110 KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 303 INAVDKDGL--TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
+N D +G T LH A + +V YLL+ A+ D+ G LH A +
Sbjct: 37 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
+L+ + +N+ D +TPLH A + +I KLLL GAD T KNRDG TPLDL
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
+PLH+ + G + + L+KH +N D T LH+A K + LL+ A+P
Sbjct: 81 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 140
Query: 339 VDEDGAT 345
+ DG T
Sbjct: 141 KNRDGNT 147
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
K+ PLH AA G++ LL+H D ++DG T L
Sbjct: 112 KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G + LLKH + A + D LH A V LL +A P
Sbjct: 89 PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D G T L YA + +LL + IN +N G T LH AV + +V+LLL+ G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438
A + N+ T +D + + +++LL+ +P+
Sbjct: 209 ASVQVLNKRQRTAVDCAEQNSK------IMELLQVVPSC 241
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 49/111 (44%)
Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
+N +DG + LH A + + + LL+ AN + D A LH A Q +K L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
L N N +D G TPL A ++V LLL GA N G T L
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGM 428
+N+ DG +PLH+A R D++ LLL GA+ +N D PL L G F +
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH----FQV 134
Query: 429 IKLL 432
+K L
Sbjct: 135 VKCL 138
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 267 LPHLATATSK---KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQ 323
L H A A ++ + +PLH G F V LL N N D G T L A G
Sbjct: 106 LKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165
Query: 324 AVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA 383
+ LL+ A+ + G T LH AV +++LLL+ + + + T + A
Sbjct: 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Query: 384 VQARRTDIVKLLLI 397
Q + I++LL +
Sbjct: 226 EQ--NSKIMELLQV 237
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
+DG T LH A + + +K LL D+N + DG TPLHLA + +IVKLLL KGA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 401 DKTLKNRDGLTPLDLCLYSG 420
D +++DG TP L +G
Sbjct: 67 DVNARSKDGNTPEHLAKKNG 86
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 48/94 (51%)
Query: 308 KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV 367
KDG T LH A LL + A+ +DG T LH A + + +K+LL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
D+N + DG TP HLA + +IVKLL KGAD
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
+G T LH A + +K+LL D+N +D +G TPLHLA + ++VKLLL GAD
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 402 KTLKNRDGLTPLDLCLYSG 420
K+++G TPL L +G
Sbjct: 61 VNAKDKNGRTPLHLAARNG 79
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 48/92 (52%)
Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
+G T LH A V LL A+ D++G T LH A + +K+LL D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
+N +D +G TPLHLA + ++VKLLL GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V LL+ D+NA DK+G T LH A V LL A+
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 340 DEDGATLLHYAVQTASSPAIKILL 363
D++G T LH A + +K+LL
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
PLH A +G V LL+ D+NA DK+G T LH A V LL A
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
L AA G+ V LL V +A+++ G TAL + G AV LL++ A+P V
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQ 72
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D G + +H A +T +K+L+ + D+N D+ G P+HLA++ + +V L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---A 129
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
+ L +RD GLTPL+L G
Sbjct: 130 PESDLHHRDASGLTPLELARQRG 152
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 320 GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI-LLLYNVDINLQDNDGWT 378
G Q V L RE +P ++ G T L V SPA+ + LL N+QD G +
Sbjct: 21 GDVQEVRRLLHRELVHPDALNRFGKTALQ--VMMFGSPAVALELLKQGASPNVQDASGTS 78
Query: 379 PLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDT 423
P+H A + D +K+L+ GAD + G P+ L + G +
Sbjct: 79 PVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSS 123
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
A+ TS P+H A +G + L++H D+NA+D G +H AI +V ++L
Sbjct: 74 ASGTS----PVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 331 RESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
ES + D G T L A Q + + IL
Sbjct: 130 PES-DLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 281 LHSLAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
L AA G+ V LL V +A+++ G TAL + G AV LL++ A+P V
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQ 70
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D G + +H A +T +K+L+ + D+N D+ G P+HLA++ + +V L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL---A 127
Query: 400 ADKTLKNRD--GLTPLDLCLYSG 420
+ L +RD GLTPL+L G
Sbjct: 128 PESDLHHRDASGLTPLELARQRG 150
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 320 GKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI-LLLYNVDINLQDNDGWT 378
G Q V L RE +P ++ G T L V SPA+ + LL N+QD G +
Sbjct: 19 GDVQEVRRLLHRELVHPDALNRFGKTALQ--VMMFGSPAVALELLKQGASPNVQDASGTS 76
Query: 379 PLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDT 423
P+H A + D +K+L+ GAD + G P+ L + G +
Sbjct: 77 PVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSS 121
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
A+ TS P+H A +G + L++H D+NA+D G +H AI +V ++L
Sbjct: 72 ASGTS----PVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 331 RESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
ES + D G T L A Q + + IL
Sbjct: 128 PES-DLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 346 LLHYAVQTASSPAIKILLLYNVDINLQDNDG-WTPLHLAVQARRTDIVKLLLIKGADKTL 404
LL AVQ ++ LL ++N Q+ +G WTPLH AVQ R DIV+LLL GAD L
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433
+ ++G TP L +G +KLLK
Sbjct: 88 RKKNGATPFILAAIAGS-------VKLLK 109
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV---VDE 341
A +G + L D+N D G TA +A + K +L + AN + E
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 159
Query: 342 D-------GATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPL-HLAVQARRTD-- 390
D GAT L A + +KILL D+N DN G L H + + +D
Sbjct: 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 219
Query: 391 -IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMI-KLLKQ 434
I LLL GAD ++ G TPL L + + + G++ +LL+Q
Sbjct: 220 AITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQ 261
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 300 NVDINAVDKDGLTALHKAIIGKK----QAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
D+NA D G AL A++ +A+T+ LL A+ V E G T L AV+
Sbjct: 192 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251
Query: 356 SPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
++ LL +++IN D+DG T L LAV+ + I +LL +GA
Sbjct: 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 292 FVDALLKHNVDINAVDKDG-LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA 350
V LL+ ++N +++G T LH A+ ++ + LLR A+P + ++GAT A
Sbjct: 40 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
Query: 351 VQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR 407
S +K+ L D+N D G+T A + +K L +GA+ L+ +
Sbjct: 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 346 LLHYAVQTASSPAIKILLLYNVDINLQDNDG-WTPLHLAVQARRTDIVKLLLIKGADKTL 404
LL AVQ ++ LL ++N Q+ +G WTPLH AVQ R DIV+LLL GAD L
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 405 KNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433
+ ++G TP L +G +KLLK
Sbjct: 68 RKKNGATPFLLAAIAGS-------VKLLK 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 300 NVDINAVDKDGLTALHKAIIGKK----QAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
D+NA D G AL A++ +A+T+ LL A+ V E G T L AV+
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 356 SPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
++ LL +++IN D+DG T L LAV+ + I +LL +GA
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV---VDE 341
A +G + L D+N D G TA +A + K +L + AN + E
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Query: 342 D-------GATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPL-HLAVQARRTD-- 390
D GAT L A + +KILL D+N DN G L H + + +D
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199
Query: 391 -IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMI-KLLKQ 434
I LLL GAD ++ G TPL L + + + G++ +LL+Q
Sbjct: 200 AITHLLLDHGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQ 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 292 FVDALLKHNVDINAVDKDG-LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA 350
V LL+ ++N +++G T LH A+ ++ + LLR A+P + ++GAT A
Sbjct: 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
Query: 351 VQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR 407
S +K+ L D+N D G+T A + +K L +GA+ L+ +
Sbjct: 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 27/168 (16%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKA----------------- 317
++ W+PLH+ A+ G + L+ + AV+ +G T L A
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 318 --IIGKKQAVTNYLLRES--------ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV 367
I ++ +LR++ N + G T LH A + +K+L+
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
D+N++D DGWTPLH A + + ++L+ D N+ G T D+
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 33/133 (24%)
Query: 283 SLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED 342
+ +SG+ V LL+ DIN + DGLTALH+A I + +L+ AN
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN------- 98
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
IN DN+GW PLH A DI + L+ +GA
Sbjct: 99 --------------------------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132
Query: 403 TLKNRDGLTPLDL 415
N +G TPLD+
Sbjct: 133 GAVNSEGDTPLDI 145
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
+DGA L A + + + LL DIN + DG T LH A D+VK L+ GA
Sbjct: 39 DDGAVFL-AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 401 DKTLKNRDGLTPLDLCLYSG 420
+ + +G PL G
Sbjct: 98 NINQPDNEGWIPLHAAASCG 117
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH AA G + L++ D+N D DG T LH A K+ L+ + V
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261
Query: 340 DEDGATLLHYA 350
++ G T A
Sbjct: 262 NKVGQTAFDVA 272
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 228 LDDVSEFFNSGNY-DPPDKKSDG-----PRRKLFTKEEKVLLNKKLPHLATATSKKWLPL 281
L D ++ NSG+ D KS G K +T+ K+L+ + + W PL
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPL 236
Query: 282 HSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
H+ A G+ L+++ D+ AV+K G TA
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%)
Query: 308 KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV 367
K G TALH A V L++ + + D DG T LH A A +IL+
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 368 DINLQDNDGWTPLHLA 383
D+ + G T +A
Sbjct: 257 DMEAVNKVGQTAFDVA 272
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
L S AA G+ + +LL++NV++NA + G TAL +G + LLR ANP + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
G ++H A + ++ LL + D+N++DN+G PLHLA + +V+ L+ A
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
+N G T DL GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
++ E +P + +++G T LH AV + +K L+ + V++N D+DGWTPLH A
Sbjct: 56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Query: 389 TDIVKLLLIKGA 400
+ K L+ GA
Sbjct: 116 VQVCKFLVESGA 127
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 270 LATATSKKWLPLHSLAAS---GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVT 326
+A K+ PL L S GEF V ++ D + + +G+TALH A+ +
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV 86
Query: 327 NYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363
+L++ N D DG T LH A + K L+
Sbjct: 87 KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH+ +G V L++ V++NA D DG T LH A V +L+ A F +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 363 LLYNVDI-NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
++Y VD +L +++G T LH AV A T+IVK L+ G + + DG TPL
Sbjct: 56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
++ E +P + +++G T LH AV + +K L+ + V++N D+DGWTPLH A
Sbjct: 56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
Query: 389 TDIVKLLLIKGA 400
+ K L+ GA
Sbjct: 116 VQVCKFLVESGA 127
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 279 LPLHSLAAS---GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
LPL L S GEF V ++ D + + +G+TALH A+ + +L++ N
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILL 363
D DG T LH A + K L+
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH+ +G V L++ V++NA D DG T LH A V +L+ A F +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 363 LLYNVD-INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
++Y VD +L +++G T LH AV A T+IVK L+ G + + DG TPL
Sbjct: 56 IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W P H + G V +L + D+N + G+T LH A+ K V+ +L+ A+
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
+ D+ LH A S I++L L +N QD GWTPL A+ D L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 395 LLIK-GADKTLKNRDGLTPLDLCL 417
L+ K GA+ L + G D+ L
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDIN-AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
PLH EF+ V LL + D+DG LH ++ + +T++LL + N +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 339 ---VDEDGATLLHYAVQTASSPAIKILLLYNV----DINLQDNDGWTPLHLAVQARRTDI 391
D+ G T H A + +K LY+ D+N N G T LHLAV + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKS--LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 392 VKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438
+ L+ GA +K++ P L+ + +I+LL L S
Sbjct: 123 SQFLIENGASVRIKDKFNQIP----LHRAASVGSLKLIELLCGLGKS 165
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ D G T LH A +++LL + D+N DNDG TPLHLA
Sbjct: 33 LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
+IV++LL GAD +++ G T D+ + +G +
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D+ G T LH A + LL+ A+ D DG+
Sbjct: 22 ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
T LH A +++LL + D+N QD G T +++ D+ ++L
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%)
Query: 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
K PLH A V+ LLKH D+NA D DG T LH A + + LL+ A+
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKIL 362
D+ G T ++ + +IL
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W P H + G V +L + D+N + G+T LH A+ K V+ +L+ A+
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
+ D+ LH A S I++L L +N QD GWTPL A+ D L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 395 LLIK-GADKTLKNRDGLTPLDLCL 417
L+ K GA+ L + G D+ L
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDIN-AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
PLH EF+ V LL + D+DG LH ++ + +T++LL + N +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 339 ---VDEDGATLLHYAVQTASSPAIKILLLYNV----DINLQDNDGWTPLHLAVQARRTDI 391
D+ G T H A + +K LY+ D+N N G T LHLAV + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKS--LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 392 VKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438
+ L+ GA +K++ P L+ + +I+LL L S
Sbjct: 123 SQFLIENGASVRIKDKFNQIP----LHRAASVGSLKLIELLCGLGKS 165
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W P H + G V +L + D+N + G+T LH A+ K V+ +L+ A+
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
+ D+ LH A S I++L L +N QD GWTPL A+ D L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 395 LLIK-GADKTLKNRDGLTPLDLCL 417
L+ K GA+ L + G D+ L
Sbjct: 193 LVEKYGAEYDLVDNKGAKAEDVAL 216
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDIN-AVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
PLH EF+ V LL + D+DG LH ++ + +T++LL + N +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 339 ---VDEDGATLLHYAVQTASSPAIKILLLYNV----DINLQDNDGWTPLHLAVQARRTDI 391
D+ G T H A + +K LY+ D+N N G T LHLAV + ++
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKS--LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 392 VKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438
+ L+ GA +K++ P L+ + +I+LL L S
Sbjct: 123 SQFLIENGASVRIKDKFNQIP----LHRAASVGSLKLIELLCGLGKS 165
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
L S AA G+ + +LL++NV++NA + G TAL +G + LLR ANP + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
G ++H A + ++ LL + D+N++DN+G PLHLA + +V+ L+ A
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
+N G T DL GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
L S AA G+ + +LL++NV++NA + G TAL +G + LLR ANP + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
G ++H A + ++ LL + D+N++DN+G PLHLA + +V+ L+ A
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
+N G T DL GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
L S AA G+ + +LL++NV++NA + G TAL +G + LLR ANP + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
G ++H A + ++ LL + D+N++DN+G PLHLA + +V+ L+ A
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
+N G T DL GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH G V LLKH +N V D T L A + N LL+ A+
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP 153
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
+ D A+ +H A + + L+ Y +I+ + + TPL+LA + ++ VK LL G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 400 AD 401
AD
Sbjct: 214 AD 215
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W P+H A G + L+ +N + D ++ LH+A +G + LL+ A
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
V D T L A + S + +LL + + ++D +P+H A + + V L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 178
Query: 398 KGADKTLKNRDGLTPLDL 415
G + K TPL L
Sbjct: 179 YGGNIDHKISHLGTPLYL 196
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 39/74 (52%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
E G LHYA ++ LLL DIN D TPL AV VKLLL KGA
Sbjct: 33 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 401 DKTLKNRDGLTPLD 414
DKT+K DGLT L+
Sbjct: 93 DKTVKGPDGLTALE 106
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G+ ++ LL DINA DK +T L A+ + LL + A+ V
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 97
Query: 340 DEDGATLLHYAVQTASSPAIKILL 363
DG T A++ + AIK LL
Sbjct: 98 GPDGLT----ALEATDNQAIKALL 117
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 349 YAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRD 408
+A++ +K + D+N G PLH A + +I++ LL+KGAD ++
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 409 GLTPLDLCLYSGR 421
+TPL +Y G
Sbjct: 68 HITPLLSAVYEGH 80
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYA 350
+D+ +D+ A + DGLTALH A+ + Q LL A+ VD + G + L +A
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 351 VQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL 410
V+ S +++LL + ++N Q G + LH A +V+ L+ GAD +LKN
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 217
Query: 411 TPL 413
TPL
Sbjct: 218 TPL 220
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY----NV 367
T LH A+I +V L+ A+P +D G T H A + S ++ LL +
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD-KTLKNRDGLTPLDLCLYSGRDTRTF 426
D+ ++ DG T LH+AV + V+LLL +GAD + + G +P L + +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP----LIHAVENNSL 163
Query: 427 GMIKLLKQ 434
M++LL Q
Sbjct: 164 SMVQLLLQ 171
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 340 DEDGATLLHYAVQTASSPAIKILL-LY---NVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
DEDG T LH AV + PA+ L+ L+ ++++ +N TPLHLAV +V+LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 396 LIKGADKTLKNRDGLTPLDL--------CLYSGRDTRTFGMIKL 431
+ GA +R G T L CL + D+ G + L
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 293 VDALLKHNVDINAVD-KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351
V LL+ DI+AVD K G + L A+ ++ LL+ AN G++ LH A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393
P ++ L+ D +L++ TPL +A R DI++
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%)
Query: 300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAI 359
NV+ +A D T LH A + + LL+ A+ D+ G LH A
Sbjct: 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107
Query: 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
++LL + +N D +TPLH A R ++ LLL GAD TL N G + +D+
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 312 TALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
TALH A+ K++ V LLR+ AN ++D T LH A + A + +++L +
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
+N D+ G T LH A A +LLL G+D ++ + G T +
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A ++ L KH +NA+D G TALH+A + LL ++P ++
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
Query: 340 DEDGATLLHYAVQTASSPAIKIL 362
G T A Q + +IL
Sbjct: 310 SLQGFT----AAQMGNEAVQQIL 328
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
LL+ ++N +KD +T LH A V L + A +D G T LH A
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQA 386
++LL Y D ++ G+T + +A
Sbjct: 293 LQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL------------------HKAI 318
++ PLH A+ LL H D V+ G +A+ H +
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183
Query: 319 IGKKQA----VTNYLLRESANPFVVDEDGATLLHYAVQT---ASSPAIKILLLYNVDINL 371
++A V L E N F + T LH AV + ++LL ++N
Sbjct: 184 QAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE 242
Query: 372 QDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
++ D TPLH+A + D++++L GA + G T L +G
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ +D+ G T LH A + +++LL + D+N D+ G TPLHLA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
+IV++LL GAD +++ G T D+ + +G +
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
V L+ + D+NA+D G+T LH A + LL+ A+ D G T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+++LL Y D+N QD G T +++ D+ ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G LL A + ++IL+ D+N D+ G TPLHLA + +IV++LL GAD
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 403 TLKNRDGLTPLDLCLYSG 420
+ G TPL L G
Sbjct: 74 NASDSWGRTPLHLAATVG 91
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH G V LLKH +N V D T L A + N LL+ A+
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQP 97
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
+ D A+ +H A + + L+ Y +I+ + + TPL+LA + ++ VK LL G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 400 AD 401
AD
Sbjct: 158 AD 159
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W P+H A G + L+ +N + D ++ LH+A +G + LL+ A
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397
V D T L A + S + +LL + + ++D +P+H A + + V L+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIA 122
Query: 398 KGADKTLKNRDGLTPLDL 415
G + K TPL L
Sbjct: 123 YGGNIDHKISHLGTPLYL 140
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA-NPFVVDEDGATLLHYAVQTA 354
LL D N+ D G T LH A+ V LLR A N DG T L A + A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
++ L+ + DIN DN G T LH A T+ V +LL+ A++ ++ TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 415 LCLYSG 420
L G
Sbjct: 190 LAAREG 195
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 280 PLHSLAASGEFYFVDALLKHNV-DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
PLH+ A+ LL++ ++NA DG T L A + + L+ A+
Sbjct: 87 PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 146
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
D G T LH+A ++ A+ ILL+++ + + QD+ TPL LA + + K LL
Sbjct: 147 ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 206
Query: 399 GADKTLKNRDGLTPLDLC 416
A++ + + P D+
Sbjct: 207 FANREITDHMDRLPRDVA 224
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 323 QAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHL 382
Q +++ L + + +D+ G T LH A + A + A K LL D N QDN G TPLH
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 383 AVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLC 416
AV A + ++LL + + + DG TPL L
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILA 125
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 46/104 (44%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351
V+ L+ + DINA D G TALH A N LL AN D+ T L A
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Query: 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+ S A K LL + + D+ P +A + DIV+LL
Sbjct: 193 REGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 50/105 (47%)
Query: 310 GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI 369
G T LH A I YLL+ ++P V D G T LH A +++LL + +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
N +PLH A + DIVKLLL GA + N GL P+D
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 38/74 (51%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
E G LHYA ++ LLL DIN D TPL AV VKLLL KGA
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 401 DKTLKNRDGLTPLD 414
DKT+K DGLT +
Sbjct: 98 DKTVKGPDGLTAFE 111
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G+ ++ LL DINA DK +T L A+ + LL + A+ V
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102
Query: 340 DEDGATLLHYAVQTASSPAIKILL 363
DG T A + + AIK LL
Sbjct: 103 GPDGLT----AFEATDNQAIKALL 122
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 349 YAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRD 408
+A++ +K + D+N G PLH A + +I++ LL+KGAD ++
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 409 GLTPLDLCLYSGR 421
+TPL +Y G
Sbjct: 73 HITPLLSAVYEGH 85
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ +D+ G T LH A + +++LL + D+N +D G TPLHLA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
+IV++LL GAD +++ G T D+ + +G +
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
V L+ + D+NA+D G+T LH A + LL+ A+ D G T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+++LL Y D+N QD G T +++ D+ ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G LL A + ++IL+ D+N D+ G TPLHLA + +IV++LL GAD
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 403 TLKNRDGLTPLDLCLYSG 420
++ G TPL L G
Sbjct: 74 NARDIWGRTPLHLAATVG 91
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
L S AA G+ + +LL++NV++NA + G TAL +G + LLR ANP + D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
G ++H A + ++ LL D+N++DN+G PLHLA + +V+ L+ A
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
Query: 401 DKT-LKNRDGLTPLDLCLYSGRD 422
+N G T DL GR+
Sbjct: 128 SNVGHRNHKGDTACDLARLYGRN 150
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ +D+ G T LH A + +++LL + D+N D G TPLHLA
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
+IV++LL GAD +++ G T D+ + +G +
Sbjct: 93 LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
V L+ + D+NA+D G+T LH A + LL+ A+ D G T LH A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+++LL Y D+N QD G T +++ D+ ++L
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G LL A + ++IL+ D+N D+ G TPLHLA + +IV++LL GAD
Sbjct: 15 GKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 403 TLKNRDGLTPLDLCLYSG 420
+ G TPL L G
Sbjct: 74 NASDIWGRTPLHLAATVG 91
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 55.1 bits (131), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 54/111 (48%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA DK GLT LH A + + LL+ A+ +D G
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
T LH +++LL + D+N QD G T +++ D+ ++L
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ D+ G T LH A +++LL D+N D G TPLHL
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
+IV++LL GAD +++ G T D+ + +G +
Sbjct: 93 LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A + V+ LLK+ D+NA+D G T LH + + LL+ A+
Sbjct: 50 PLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Query: 340 DEDGATLLHYAVQTASSPAIKIL 362
D+ G T ++ + +IL
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 301 VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV--------------DEDGATL 346
+D+N DG T L A T E P V+ D GAT
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATA 60
Query: 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLK 405
LH A + S A K LL + D N+QDN G TPLH AV A + ++L+ + D +
Sbjct: 61 LHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 406 NRDGLTPLDLC 416
DG TPL L
Sbjct: 121 MHDGTTPLILA 131
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 61/142 (42%), Gaps = 1/142 (0%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH AA LL+ + D N D G T LH A+ Q V L+R A
Sbjct: 60 ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 340 D-EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
DG T L A + A ++ L+ + D+N D+ G + LH A D +LL
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179
Query: 399 GADKTLKNRDGLTPLDLCLYSG 420
GA+K ++N TPL L G
Sbjct: 180 GANKDMQNNREETPLFLAAREG 201
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
L+ + D+NAVD G +ALH A LL+ AN + + T L A + S
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
K+LL + + ++ D+ P +A + DIV+LL
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 280 PLHS-LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYL---LRESAN 335
PLH+ ++A + F + D++A DG T L I+ + AV L + A+
Sbjct: 93 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHAD 149
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
VD+ G + LH+A + A +LL + ++Q+N TPL LA + + K+L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 396 LIKGADKTLKNRDGLTPLDLC 416
L A++ + + P D+
Sbjct: 210 LDHFANRDITDHMDRLPRDIA 230
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 25/140 (17%)
Query: 281 LHSLAASGEF----YFVDALLKHNVDINAVDKDGLTALHKAII----GKKQAVTNYLLRE 332
LH AA+ +F Y +++ K DI +D++G TAL I+ G+ Q + LL E
Sbjct: 203 LHQAAANRDFGXXVYXLNST-KLKGDIEELDRNGXTAL--XIVAHNEGRDQVASAKLLVE 259
Query: 333 SANPFVVDEDGA-----------TLLHYAVQTASSPAIKILL-LYNVDINLQDNDGWTPL 380
VD DGA T LHYA Q ++ P +K L+ + + QD DG TP+
Sbjct: 260 KG--AKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPI 317
Query: 381 HLAVQARRTDIVKLLLIKGA 400
LA Q R ++V L+ +GA
Sbjct: 318 XLAAQEGRIEVVXYLIQQGA 337
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 314 LHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTASSPAIKILLLY------- 365
LH G A+T + RES N ++D T+LH+ +S+ + L+++
Sbjct: 98 LHTEAAGS-YAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 154
Query: 366 -NVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR 424
D+N D D TPL LAV ARR +V L GAD T+ N+ + L+ R
Sbjct: 155 AGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERS----ALHQAAANR 210
Query: 425 TFG 427
FG
Sbjct: 211 DFG 213
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 278 WLPLHSLAASGEFYFVDA---LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
W+ +S A E V + D+NA D D T L A++ +++ + YL + A
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGA 190
Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNV----DINLQDNDGWTPLHLAVQARRTD 390
+P + ++ + LH A + L + DI D +G T L + D
Sbjct: 191 DPTIYNKSERSALHQAAANRDF-GXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRD 249
Query: 391 IV---KLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
V KLL+ KGA DG D Y GR
Sbjct: 250 QVASAKLLVEKGAKVDY---DGAARKDSEKYKGR 280
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 301 VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV--------------DEDGATL 346
+D+N DG T L A T E P V+ D G T
Sbjct: 2 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 61
Query: 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLK 405
LH A + + S A K LL + D N+QDN G TPLH AV A + ++L+ + D +
Sbjct: 62 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
Query: 406 NRDGLTPLDLC 416
DG TPL L
Sbjct: 122 MHDGTTPLILA 132
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
LL+ + D N D G T LH A+ Q V L+R A DG T L A + A
Sbjct: 77 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 136
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
++ L+ + D+N D+ G + LH A D +LL GA+K ++N TPL
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 415 LCLYSG 420
L G
Sbjct: 197 LAAREG 202
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351
++ L+ + D+NAVD G +ALH A LL+ AN + + T L A
Sbjct: 140 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 199
Query: 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+ S K+LL + + ++ D+ P +A + DIV+LL
Sbjct: 200 REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 280 PLHS-LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYL---LRESAN 335
PLH+ ++A + F + D++A DG T L I+ + AV L + A+
Sbjct: 94 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHAD 150
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
VD+ G + LH+A + A +LL + ++Q+N TPL LA + + K+L
Sbjct: 151 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 210
Query: 396 LIKGADKTLKNRDGLTPLDLC 416
L A++ + + P D+
Sbjct: 211 LDHFANRDITDHMDRLPRDIA 231
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 56/131 (42%), Gaps = 15/131 (11%)
Query: 301 VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV--------------DEDGATL 346
+D+N DG T L A T E P V+ D G T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLK 405
LH A + + S A K LL + D N+QDN G TPLH AV A + ++L+ + D +
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Query: 406 NRDGLTPLDLC 416
DG TPL L
Sbjct: 121 MHDGTTPLILA 131
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
LL+ + D N D G T LH A+ Q V L+R A DG T L A + A
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
++ L+ + D+N D+ G + LH A D +LL GA+K ++N TPL
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 415 LCLYSG 420
L G
Sbjct: 196 LAAREG 201
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
L+ + D+NAVD G +ALH A LL+ AN + + T L A + S
Sbjct: 143 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202
Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
K+LL + + ++ D+ P +A + DIV+LL
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 280 PLHS-LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYL---LRESAN 335
PLH+ ++A + F + D++A DG T L I+ + AV L + A+
Sbjct: 93 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHAD 149
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
VD+ G + LH+A + A +LL + ++Q+N TPL LA + + K+L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209
Query: 396 LIKGADKTLKNRDGLTPLDLC 416
L A++ + + P D+
Sbjct: 210 LDHFANRDITDHMDRLPRDIA 230
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV- 338
PLH + + +ALL D D G T LH A A L + P +
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 107
Query: 339 -----VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARRTDIV 392
+ +G T LH A +++L+ D+N Q+ +G T LHLAV + D+V
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 393 KLLLIKGADKTLKNRDGLTPLDLCLY--SGRDTRTFGMIKL--LKQLPTSK 439
LLL GAD G +P L S R + G + L L+ LP S+
Sbjct: 168 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVD-----INLQDNDGWTPLHLAVQARRTDIVKLL 395
EDG + LH A+ A+ + ++ V +N Q+N TPLHLAV + +I + L
Sbjct: 6 EDGDSFLHLAI-IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 396 LIKGADKTLKNRDGLTPLDLCLYSG 420
L G D L++ G TPL L G
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQG 89
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%)
Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361
D+N D G + LH A + AV L+ A V++ T LH A ++
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
LL Y DIN + G PLH A + + + L+ GA ++ N+ G P+D
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 143
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D+ G + LH+A + S +++L++ IN+ + TPLHLA DIV+ LL
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95
Query: 400 ADKTLKNRDGLTPLDLCLYSGRD 422
AD N G PL + G+D
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQD 118
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
D+N D+ G++PLH A + R+ +V++L+++GA + NR TPL L G
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH G V+ L+ IN +++ T LH A + + LL+ A+ V
Sbjct: 42 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 340 DEDGATLLHYAV 351
+E G LHYA
Sbjct: 102 NEHGNVPLHYAC 113
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
PLH A+ G V LL++ DINAV++ G LH A + V L+ A
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI- 397
D G T LH A + + S A K LL + D N+QDN G TPLH AV A + ++L+
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 398 KGADKTLKNRDGLTPLDLC 416
+ D + DG TPL L
Sbjct: 81 RATDLDARMHDGTTPLILA 99
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
LL+ + D N D G T LH A+ Q V L+R A DG T L A + A
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
++ L+ + D+N D+ G + LH A D +LL GA+K ++N TPL
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 415 LCLYSG 420
L G
Sbjct: 164 LAAREG 169
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
L+ + D+NAVD G +ALH A LL+ AN + + T L A + S
Sbjct: 111 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170
Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
K+LL + + ++ D+ P +A + DIV+LL
Sbjct: 171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 280 PLHS-LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYL---LRESAN 335
PLH+ ++A + F + D++A DG T L I+ + AV L + A+
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---ILAARLAVEGMLEDLINSHAD 117
Query: 336 PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
VD+ G + LH+A + A +LL + ++Q+N TPL LA + + K+L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Query: 396 LIKGADKTLKNRDGLTPLDLC 416
L A++ + + P D+
Sbjct: 178 LDHFANRDITDHMDRLPRDIA 198
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPL 413
N D G T LHLA + R+D K LL AD +++ G TPL
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G LL A + ++IL+ D+N +D DG+TPLHLA + +IV++LL GAD
Sbjct: 3 GKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 62 NAQDKFGKTAFDISIDNGNE 81
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ D+DG T LH A + +++LL D+N QD G T +++
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 80
Query: 389 TDIVKLL 395
D+ ++L
Sbjct: 81 EDLAEIL 87
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ PLH A G V+ LLK D+NA DK G TA +I
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 76
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+ D+ G
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 345 TLLHYAVQTASSPAIKIL 362
T ++ + +IL
Sbjct: 70 TAFDISIDNGNEDLAEIL 87
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G T LH A +++LL D+N N G TPLHLA A +IV++LL GAD
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 107 NAQDKFGKTAFDISIDNGNE 126
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G LL A + ++IL D+N D G TPLHLA +IV++LL GAD
Sbjct: 15 GKKLLE-AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 403 TLKNRDGLTPLDLCLYS 419
G TPL L ++
Sbjct: 74 NATGNTGRTPLHLAAWA 90
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 50/111 (45%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L + D+NA D G T LH A + + LL+ A+ G
Sbjct: 22 ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
T LH A +++LL + D+N QD G T +++ D+ ++L
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 36/83 (43%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLK+ D+NA G T LH A + LL+ A+
Sbjct: 50 PLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 340 DEDGATLLHYAVQTASSPAIKIL 362
D+ G T ++ + +IL
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%)
Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361
D+N D G + LH A + AV L+ A V++ T LH A ++
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
LL Y DIN + G PLH A + + + L+ GA ++ N+ G P+D
Sbjct: 86 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 138
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D+ G + LH+A + S +++L++ IN+ + TPLHLA DIV+ LL
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 400 ADKTLKNRDGLTPLDLCLYSGRD 422
AD N G PL + G+D
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQD 113
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
D+N D+ G++PLH A + R+ +V++L+++GA + NR TPL L G
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 78
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH G V+ L+ IN +++ T LH A + + LL+ A+ V
Sbjct: 37 PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 340 DEDGATLLHYAV 351
+E G LHYA
Sbjct: 97 NEHGNVPLHYAC 108
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
PLH A+ G V LL++ DINAV++ G LH A + V L+ A
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD 373
L A+ G+ + V ++E +P +E+G T LH A+ A+ + L+ ++N D
Sbjct: 26 LDAALTGELEVVQQ-AVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 374 NDGWTPLHLAVQARRTDIVKLLLIKGA---DKTLKNRDGLTPLDLC 416
+ GWTPLH A T I L+ GA TL DG T + C
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS--DGATAFEKC 128
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
LH+ + VD L+ ++N+ D G T LH A + L++ A F
Sbjct: 58 LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117
Query: 341 -EDGAT 345
DGAT
Sbjct: 118 LSDGAT 123
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 325 VTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAV 384
+++++ + ++ D G T LH A + + S A K LL + D +QDN G TPLH AV
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 385 QARRTDIVKLLLI-KGADKTLKNRDGLTPLDLC 416
A + ++LL + D + DG TPL L
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILA 96
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTA 354
LL+ + D D G T LH A+ Q V LLR A DG T L A + A
Sbjct: 41 LLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLD 414
++ L+ + D+N D+ G + LH A D +LL GA+K ++N TPL
Sbjct: 101 LEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLF 160
Query: 415 LCLYSG 420
L G
Sbjct: 161 LAAREG 166
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355
L+ + D+NAVD G +ALH A LL+ AN + + T L A + S
Sbjct: 108 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGS 167
Query: 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
K+LL + + ++ D+ P +A + DIV+LL
Sbjct: 168 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 280 PLHS-LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
PLH+ ++A + F L D++A DG T L A + + L+ A+
Sbjct: 58 PLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA 117
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
VD+ G + LH+A + A +LL + ++Q+N TPL LA + + K+LL
Sbjct: 118 VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
Query: 399 GADKTLKNRDGLTPLDLC 416
A++ + + P D+
Sbjct: 178 FANRDITDHMDRLPRDIA 195
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV- 338
PLH + + +ALL D D G T LH A A L + P +
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH 104
Query: 339 -----VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARRTDIV 392
+ +G T LH A +++L+ D+N Q+ +G T LHLAV + D+V
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 164
Query: 393 KLLLIKGADKTLKNRDGLTPLDL 415
LLL GAD G +P L
Sbjct: 165 SLLLKCGADVNRVTYQGYSPYQL 187
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 339 VDEDGATLLHYAVQTASSPAIKILLLYNVD-----INLQDNDGWTPLHLAVQARRTDIVK 393
+ EDG + LH A+ A+ + ++ V +N Q+N TPLHLAV + +I +
Sbjct: 1 LTEDGDSFLHLAI-IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 59
Query: 394 LLLIKGADKTLKNRDGLTPLDLCLYSG 420
LL G D L++ G TPL L G
Sbjct: 60 ALLGAGCDPELRDFRGNTPLHLACEQG 86
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINL-QDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
DG T LH AV + +++L D+N + G TPLHLAV+A+ +++LLL GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 401 DKTLKNRDGLTPL 413
D T + G TPL
Sbjct: 217 DPTARMYGGRTPL 229
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD---EDGATLLHYAVQTASSPAIKIL 362
V +DG TALH A+I + + ++LL SA +D + G T LH A + ++ L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
+ + + G T LHLA + R +LL
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED--GATLLHYAVQTASSPAIK 360
+ A + DG T LH A+I K A LLR++ E G T LH AV+ ++ ++
Sbjct: 151 LEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
+LL D + G TPL A+ + +LL GA + D L+P
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL-------RES 333
LH A GE V+ L + ++ G TALH A + LL R++
Sbjct: 49 LHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108
Query: 334 ANPFVVDEDGAT--LLHYAVQTASSPAIKILLL-----YNVDINLQDNDGWTPLHLAVQA 386
++ ++ T H S P + + + + ++ DG TPLH+AV
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168
Query: 387 RRTDIVKLLLIKGAD-KTLKNRDGLTPLDLCL 417
+ ++V+LL GAD + G TPL L +
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINL-QDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
DG T LH AV + +++L D+N + G TPLHLAV+A+ +++LLL GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 401 DKTLKNRDGLTPL 413
D T + G TPL
Sbjct: 217 DPTARMYGGRTPL 229
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD---EDGATLLHYAVQTASSPAIKIL 362
V +DG TALH A+I + + ++LL SA +D + G T LH A + ++ L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396
+ + + G T LHLA + R +LL
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 303 INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED--GATLLHYAVQTASSPAIK 360
+ A + DG T LH A+I K A LLR++ E G T LH AV+ ++ ++
Sbjct: 151 LEAENYDGHTPLHVAVI-HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 361 ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412
+LL D + G TPL A+ + +LL GA + D L+P
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL-------RES 333
LH A GE V+ L + ++ G TALH A + LL R++
Sbjct: 49 LHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108
Query: 334 ANPFVVDEDGAT--LLHYAVQTASSPAIKILLL-----YNVDINLQDNDGWTPLHLAVQA 386
++ ++ T H S P + + + + ++ DG TPLH+AV
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168
Query: 387 RRTDIVKLLLIKGAD-KTLKNRDGLTPLDLCL 417
+ ++V+LL GAD + G TPL L +
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 53/111 (47%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGA 344
A +G+ V L+ + D+NA D+ GLT L+ A + LL+ A+ VD G
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGF 81
Query: 345 TLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
T LH A ++LL + D+N QD G T +++ D+ ++L
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ DE G T L+ A +++LL D+N D G+TPLHLA
Sbjct: 33 LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
+I ++LL GAD +++ G T D+ + +G +
Sbjct: 93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PL+ A G V+ LLK+ D+NAVD G T LH A + LL+ A+
Sbjct: 50 PLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 340 DEDGATLLHYAVQTASSPAIKIL 362
D+ G T ++ + +IL
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEIL 132
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL-IKGAD 401
G T L AV +K LL D+N+QD+DG T L A + +I LLL + D
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 402 KTLKNRDGLTPLDLCLYSGR 421
+L +RDG T L + L +G+
Sbjct: 243 ISLTDRDGSTALMVALDAGQ 262
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 302 DINA-VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360
+INA + G TAL A+ + V LL A+ V D+DG+T L A +
Sbjct: 174 NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Query: 361 ILLLY-NVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+LL + DI+L D DG T L +A+ A +++I +L
Sbjct: 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 40/118 (33%)
Query: 338 VVDEDGATLLHYAVQTASSPAIKILLLYNV-DINLQDNDGWTP----------------- 379
+ D +G T LHY+V A+ P ++ LL V ++ Q+ G++P
Sbjct: 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 380 ---------------------LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
L LAV R D+VK LL AD +++ DG T L +C
Sbjct: 166 VLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL-MC 222
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI-IGKKQAVTNYL 329
A A+ L + G V ALL D+N D DG TAL A G K+ L
Sbjct: 177 AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Query: 330 LRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
S + + D DG+T L A+ S +L
Sbjct: 237 AVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLK-NRDGLTPLDL 415
+N+ D++G T LH +V +V+ LL G K K NR G +P+ L
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML 151
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PL G +D L+++ + D +G TAL A+ + + LL + +N
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D G T L +++ S LL + ++N ++ +G TPL +A + R++IVK LL G
Sbjct: 98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 400 ADKTLKNRDGLTP 412
AD + ++ GLT
Sbjct: 158 ADISARDLTGLTA 170
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351
+ LL ++N D G T L +II ++ +LL AN + +G T L A
Sbjct: 83 IAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS 142
Query: 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+ S +K LL DI+ +D G T A R +++K+
Sbjct: 143 KYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G LL A + ++IL+ D+ +D +G TPLHLA + ++VKLLL GAD
Sbjct: 25 GKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 84 XAQDKFGKTAFDISIDNGNE 103
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ D++G+T LH A + +K+LL D+ QD G T +++
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 389 TDIVKLL 395
D+ ++L
Sbjct: 103 EDLAEIL 109
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 269 HLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNY 328
H+ + KK L A +G+ V L+ + D+ A DK+G T LH A V
Sbjct: 19 HMGSDLGKKLL---EAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
LL A+ D+ G T ++ + +IL
Sbjct: 76 LLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 343 GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
G LL A + ++IL+ D+ +D +G TPLHLA + ++VKLLL GAD
Sbjct: 7 GKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 403 TLKNRDGLTPLDLCLYSGRD 422
+++ G T D+ + +G +
Sbjct: 66 NAQDKFGKTAFDISIDNGNE 85
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
L+ A+ D++G+T LH A + +K+LL D+N QD G T +++
Sbjct: 25 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGN 84
Query: 389 TDIVKLL 395
D+ ++L
Sbjct: 85 EDLAEIL 91
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 269 HLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNY 328
H+ + KK L A +G+ V L+ + D+ A DK+G T LH A V
Sbjct: 1 HMGSDLGKKLL---EAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 57
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362
LL A+ D+ G T ++ + +IL
Sbjct: 58 LLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 32/127 (25%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G ++ L + V +N +DK G TAL+ A G + + L +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQP------ 129
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
N+++N Q+ G T LH A DIV+LLL KG
Sbjct: 130 --------------------------NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Query: 400 ADKTLKN 406
A L+N
Sbjct: 164 ARTDLRN 170
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 297 LKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
L H D+N V+ +D T L +A +LL+ AN D G LH+A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+ + L D+ +D++G PL +A++ DIV LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
+D AT L A S A + LL ++N D+ G PLH A T + L L +GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 401 DKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433
D ++ +G PL + + +T ++ LL+
Sbjct: 293 DLGARDSEGRDPLTIAM----ETANADIVTLLR 321
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PL A+ + LL++ ++N D G LH A I + L+ A+
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 340 DEDGATLLHYAVQTASSPAIKILLL 364
D +G L A++TA++ + +L L
Sbjct: 298 DSEGRDPLTIAMETANADIVTLLRL 322
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 297 LKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
L H D+N V+ +D T L +A +LL+ AN D G LH+A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+ + L D+ +D++G PL +A++ DIV LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
+D AT L A S A + LL ++N D+ G PLH A T + L L +GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 401 DKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433
D ++ +G PL + + +T ++ LL+
Sbjct: 293 DLGARDSEGRDPLTIAM----ETANADIVTLLR 321
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PL A+ + LL++ ++N D G LH A I + L+ A+
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 340 DEDGATLLHYAVQTASSPAIKILLL 364
D +G L A++TA++ + +L L
Sbjct: 298 DSEGRDPLTIAMETANADIVTLLRL 322
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 297 LKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354
L H D+N V+ +D T L +A +LL+ AN D G LH+A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
+ + L D+ +D++G PL +A++ DIV LL
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 341 EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400
+D AT L A S A + LL ++N D+ G PLH A T + L L +GA
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 401 DKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433
D ++ +G PL + + +T ++ LL+
Sbjct: 293 DLGARDSEGRDPLTIAM----ETANADIVTLLR 321
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PL A+ + LL++ ++N D G LH A I + L+ A+
Sbjct: 238 PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
Query: 340 DEDGATLLHYAVQTASSPAIKILLL 364
D +G L A++TA++ + +L L
Sbjct: 298 DSEGRDPLTIAMETANADIVTLLRL 322
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINL 371
TA KA +QA++ L E + VDE+G T L + S +++L D++
Sbjct: 51 TAARKA---DEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 372 QD-NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
+D G T LH+A R ++V+ L+ GAD +++ GLT L+L
Sbjct: 106 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 312 TALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINL 371
TA KA +QA++ L E + VDE+G T L + S +++L D++
Sbjct: 50 TAARKA---DEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 372 QD-NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416
+D G T LH+A R ++V+ L+ GAD +++ GLT L+L
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 278 WL---PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
WL PLH A G F + LL+ V +A K T LH A + LL+ A
Sbjct: 32 WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91
Query: 335 NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKL 394
+ D T LH+A + +++L+ Y D++ Q T +++ D+ ++
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151
Query: 395 L 395
L
Sbjct: 152 L 152
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%)
Query: 310 GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI 369
G + LH A + T LLR + + T LH A + +++LL + D+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422
N +D T LH A + ++V+LL+ GAD +++ T D+ + +G +
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 329 LLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388
+L + PF D G + LH A Q ++LL V + + TPLH+A
Sbjct: 20 ILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79
Query: 389 TDIVKLLLIKGADKTLKNRDGLTPL 413
+IV++LL GAD K+ +T L
Sbjct: 80 ANIVEVLLKHGADVNAKDMLKMTAL 104
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 368 DINLQDNDGWTPLHLAVQARR-----TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420
DI+ Q++ G+T L AV R DIVKLL+ GAD+++K+ G T +D G
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 344 ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT 403
LL A Q + +IL ++ D +G TPL++AV +I K L+ +GAD
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 404 LKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
L+N +P LY+G RT + +LK
Sbjct: 67 LQNSISDSP---YLYAGAQGRTEILAYMLKH 94
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 49/103 (47%)
Query: 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQ 352
++ L+ + D+NAVD G +ALH A LL+ AN + + T L A +
Sbjct: 31 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAR 90
Query: 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL 395
S K+LL + + ++ D+ P +A + DIV+LL
Sbjct: 91 EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 35.0 bits (79), Expect = 0.083, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 54/114 (47%)
Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361
D++A DG T L A + + L+ A+ VD+ G + LH+A + A +
Sbjct: 7 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 66
Query: 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL 415
LL + ++Q+N TPL LA + + K+LL A++ + + P D+
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 342 DGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
DG T L A + A ++ L+ + D+N D+ G + LH A D +LL GA+
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 402 KTLKNRDGLTPLDLCLYSG 420
K ++N TPL L G
Sbjct: 74 KDMQNNKEETPLFLAAREG 92
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 312 TALHKAIIGKKQA---VTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368
TALH A+ + + ++L++ S N G+T LHY T ++ +K+LL
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 369 INLQDNDGWTPLHLAVQARRTDIVKLL 395
I + + G TPL +A + + +LL
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELL 257
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 345 TLLHYAVQTASSPAIKI---LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
T LH AV++ ++ I L+ + +++ Q G T LH + +KLLL A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 402 KTLKNRDGLTPLDL 415
+ N G TPLD+
Sbjct: 231 IEIANESGETPLDI 244
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 63/194 (32%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI-------IGKKQAVTNYLLRE 332
PLH L + V L+KH + D G + L KA+ G +A+ +YL
Sbjct: 134 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY-- 191
Query: 333 SANPFVVDEDGA--TLLHYAV----QTASSPAIKILL----------------------- 363
P ++ ED T+LH+ + T S A K L
Sbjct: 192 ---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248
Query: 364 --------------LYNVDI--------NLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401
L N+D+ N QD++G T L++A + IV LL GAD
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308
Query: 402 KTLKNRDGLTPLDL 415
+ N+ GL P+D
Sbjct: 309 PFIANKSGLRPVDF 322
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 27/137 (19%)
Query: 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHY---------------AVQT 353
+G TALH A+I + + LL A+ V ++ HY A
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGAS--VSARATGSVFHYRPHNLIYYGEHPLSFAACV 131
Query: 354 ASSPAIKILLLYNVDINLQDNDGWTPLH-LAVQARRTDIVK----LLLIKGAD--KTLK- 405
S +++L+ + DI QD+ G T LH L +Q +T + LL G D K+L+
Sbjct: 132 GSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191
Query: 406 --NRDGLTPLDLCLYSG 420
N GLTP L G
Sbjct: 192 VPNNQGLTPFKLAGVEG 208
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 373 DNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDL-CLYSGRDTRTF 426
D++ +H+A + +TD V+ L+ G T++NR G T L L C + DT +
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIK 398
++ G + LH+A+ + +D+N +DN+ PL+L+V+A + K LL K
Sbjct: 208 NKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXVLLTKELLQK 266
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 340 DEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399
D++ +H A + + ++ L+ V +Q+ G T LHLA + D K L G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 400 ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434
+L + G P+ L + + + +++ K+
Sbjct: 77 EVHSLWH--GQKPIHLAVXANKTDLVVALVEGAKE 109
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 191 SEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGP 250
SE D FQD + ++ C Q+ KN YGR + FF N +
Sbjct: 228 SEPYSDTNFQDMTSHLTNHCIQKEHSKN-----YGRYEEGNEMFFEEFNQYLVTSLNINL 282
Query: 251 RRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLK 298
+ + K ++ L L A S K+LP HS G + VD LK
Sbjct: 283 ENSILC-QIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLK 329
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 333 SANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392
S + F D G + +YA+ + + LL NL +N+ PLH A T IV
Sbjct: 21 SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIV 78
Query: 393 KLLLIKGADKTLKNRDGLTPLDLCLYSGR 421
K+LL G D + + G T L + SG
Sbjct: 79 KILLFSGLDDSQFDDKGNTALYYAVDSGN 107
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 314 LHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD 373
LH+A + + LL + D+ G T L+YAV + + +K+ + N +
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYG 125
Query: 374 NDGW-TPLHLAVQARRTDIVKLLL 396
GW T + AV IV L
Sbjct: 126 KTGWKTSFYHAVXLNDVSIVSYFL 149
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 346 LLHYAVQTA---SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
+LH AV+ A S P + ++ ++ + DG T LH A + D +KLLL A
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 252
Query: 403 TLKNRDGLTPLDL 415
N G T LD+
Sbjct: 253 GTVNEAGETALDI 265
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA 350
VD ++++ ++A DG TALH A + + LL+ A V+E G T L A
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 346 LLHYAVQTA---SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402
+LH AV+ A S P + ++ ++ + DG T LH A + D +KLLL A
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 403 TLKNRDGLTPLDL 415
N G T LD+
Sbjct: 234 GTVNEAGETALDI 246
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA 350
VD ++++ ++A DG TALH A + + LL+ A V+E G T L A
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 376 GWTPLHLAVQARRTDIVKLLLIKGAD----------KTLKNRDGLTPLDLCLYSGRDTRT 425
G T LH+A++ R +V LL+ GAD K K R G +L L T
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 426 FGMIKLLKQ 434
++K L Q
Sbjct: 161 LAIVKFLLQ 169
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 35/160 (21%)
Query: 297 LKHNVDINAVDK--DGLTALHKAIIGKKQAVTNYLLRESAN-------PFVVDEDGATLL 347
LK V+ + D G TALH AI + + L+ A+ F G
Sbjct: 86 LKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGF 145
Query: 348 HYA------VQTASSPAIKILLLYN----VDINLQDNDGWTPLHLAVQARR--------- 388
++ + AI LL N DI+ +D+ G T LH V+
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205
Query: 389 TDIVKLLLIKGAD-------KTLKNRDGLTPLDLCLYSGR 421
T +LI GA + + NR GLTPL L SG+
Sbjct: 206 TSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245
>pdb|2BR3|A Chain A, Cmci-D160 Mg
pdb|2BR3|B Chain B, Cmci-D160 Mg
pdb|2BR3|C Chain C, Cmci-D160 Mg
pdb|2BR3|D Chain D, Cmci-D160 Mg
pdb|2BR3|E Chain E, Cmci-D160 Mg
pdb|2BR3|F Chain F, Cmci-D160 Mg
pdb|2BR4|A Chain A, Cmci-D160 Mg-Sam
pdb|2BR4|B Chain B, Cmci-D160 Mg-Sam
pdb|2BR4|C Chain C, Cmci-D160 Mg-Sam
pdb|2BR4|D Chain D, Cmci-D160 Mg-Sam
pdb|2BR4|E Chain E, Cmci-D160 Mg-Sam
pdb|2BR4|F Chain F, Cmci-D160 Mg-Sam
Length = 236
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 173 NPPLVLDKPSTFPTDAKESEEDRDCGFQDF 202
+PP++ D+P +P D + +E RD G+ DF
Sbjct: 25 HPPVLTDRPRDWPLD-RWAEAPRDLGYSDF 53
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 99 GKQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDL 158
G + + +EA N PD + E L + +K+ +Q + +++KQ L
Sbjct: 157 GFEALPHLEAGNNCPDYCFYLAETLMVIDHQKKSTRIQASLFTASDREKQ--------RL 208
Query: 159 KEYLAYKEAKLSQLNPPL 176
LAY +L+Q PPL
Sbjct: 209 NARLAYLSQQLTQPAPPL 226
>pdb|2BM8|A Chain A, Cmci-N160 Apo-Structure
pdb|2BM8|B Chain B, Cmci-N160 Apo-Structure
pdb|2BM8|C Chain C, Cmci-N160 Apo-Structure
pdb|2BM8|D Chain D, Cmci-N160 Apo-Structure
pdb|2BM8|E Chain E, Cmci-N160 Apo-Structure
pdb|2BM8|F Chain F, Cmci-N160 Apo-Structure
pdb|2BM8|G Chain G, Cmci-N160 Apo-Structure
pdb|2BM8|H Chain H, Cmci-N160 Apo-Structure
pdb|2BM8|I Chain I, Cmci-N160 Apo-Structure
pdb|2BM8|J Chain J, Cmci-N160 Apo-Structure
pdb|2BM8|K Chain K, Cmci-N160 Apo-Structure
pdb|2BM8|L Chain L, Cmci-N160 Apo-Structure
pdb|2BM9|A Chain A, Cmci-N160 In Complex With Sam
pdb|2BM9|B Chain B, Cmci-N160 In Complex With Sam
pdb|2BM9|C Chain C, Cmci-N160 In Complex With Sam
pdb|2BM9|D Chain D, Cmci-N160 In Complex With Sam
pdb|2BM9|E Chain E, Cmci-N160 In Complex With Sam
pdb|2BM9|F Chain F, Cmci-N160 In Complex With Sam
pdb|2BR5|A Chain A, Cmci-N160 Sah
pdb|2BR5|B Chain B, Cmci-N160 Sah
pdb|2BR5|C Chain C, Cmci-N160 Sah
pdb|2BR5|D Chain D, Cmci-N160 Sah
pdb|2BR5|E Chain E, Cmci-N160 Sah
pdb|2BR5|F Chain F, Cmci-N160 Sah
Length = 236
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 173 NPPLVLDKPSTFPTDAKESEEDRDCGFQDF 202
+PP++ D+P +P D + +E RD G+ DF
Sbjct: 25 HPPVLTDRPRDWPLD-RWAEAPRDLGYSDF 53
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 27/114 (23%)
Query: 310 GLTALHKAIIGKKQAVTNYLL------RESANP------FVVDE--DGATLLHYAVQTAS 355
G T L KA++ + V ++ ++S NP DE G + LH A++ S
Sbjct: 56 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 115
Query: 356 SPAIKILLLYNVDINLQDND-------------GWTPLHLAVQARRTDIVKLLL 396
+K+L+ D++L+ G PL LA ++ D+V LL
Sbjct: 116 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 169
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 369 INLQDND----GWTPLHLAVQARRTDIVKLLLIKGADKTLK 405
+N Q D G + LH+A++ R VKLL+ GAD L+
Sbjct: 92 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR 132
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 369 INLQDND----GWTPLHLAVQARRTDIVKLLLIKGADKTLK 405
+N Q D G + LH+A++ R VKLL+ GAD L+
Sbjct: 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR 119
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 27/114 (23%)
Query: 310 GLTALHKAIIGKKQAVTNYLL------RESANP------FVVDE--DGATLLHYAVQTAS 355
G T L KA++ + V ++ ++S NP DE G + LH A++ S
Sbjct: 43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102
Query: 356 SPAIKILLLYNVDINLQDND-------------GWTPLHLAVQARRTDIVKLLL 396
+K+L+ D++L+ G PL LA ++ D+V LL
Sbjct: 103 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156
>pdb|1CBY|A Chain A, Delta-endotoxin
Length = 259
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 267 LPHLATATSKKWLPLHSLAASGEFYFVDALLK-HNVDINAVDKDGLTALHKAIIGKKQAV 325
+L T + W+ HSL+A Y+ + L N D AV A ++ +KQ V
Sbjct: 143 FTNLDTQIDEAWIFWHSLSAHNTSYYYNILFSIQNEDTGAVMAVLPLAFEVSVDVEKQKV 202
Query: 326 TNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI 369
+ +++SA + V TL+ A+ ++++P + I + N ++
Sbjct: 203 LFFTIKDSAR-YEVKMKALTLVQ-ALHSSNAPIVDIFNVNNYNL 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,597,833
Number of Sequences: 62578
Number of extensions: 519491
Number of successful extensions: 1481
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 429
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)