Query 013643
Match_columns 439
No_of_seqs 359 out of 3459
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b7b_A Euchromatic histone-lys 100.0 6.9E-39 2.4E-43 300.1 25.7 224 210-434 5-235 (237)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 1.9E-39 6.6E-44 308.5 21.5 223 211-437 5-247 (253)
3 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-37 4.7E-42 297.2 29.5 221 213-438 36-278 (285)
4 4b93_B Ankyrin repeat domain-c 100.0 1.3E-39 4.5E-44 314.0 15.2 220 212-435 7-241 (269)
5 1k1a_A B-cell lymphoma 3-encod 100.0 8.3E-39 2.8E-43 299.7 19.8 223 211-438 4-241 (241)
6 2xai_A ASB-9, ankyrin repeat a 100.0 4.4E-38 1.5E-42 300.6 22.5 214 215-437 2-221 (261)
7 3d9h_A CDNA FLJ77766, highly s 100.0 3E-37 1E-41 299.3 23.3 217 210-435 53-275 (285)
8 1oy3_D Transcription factor in 100.0 1.4E-37 4.8E-42 297.8 20.7 211 211-422 4-271 (282)
9 3aji_A 26S proteasome non-ATPa 100.0 1.5E-37 5.3E-42 289.7 20.4 217 215-436 5-228 (231)
10 1n11_A Ankyrin; clathrin, BAND 100.0 1.5E-36 5.1E-41 310.4 28.7 225 205-434 168-398 (437)
11 1n11_A Ankyrin; clathrin, BAND 100.0 2.7E-36 9.2E-41 308.5 28.0 232 202-438 132-369 (437)
12 3ljn_A Hypothetical protein; a 100.0 1.4E-37 4.9E-42 310.6 17.8 219 211-436 15-267 (364)
13 2fo1_E LIN-12 protein; beta-ba 100.0 2.5E-37 8.7E-42 311.2 19.5 220 214-438 123-371 (373)
14 2dzn_A Probable 26S proteasome 100.0 8.6E-37 2.9E-41 283.8 20.6 212 216-435 2-227 (228)
15 3utm_A Tankyrase-1; tankyrase, 100.0 5.4E-36 1.8E-40 295.1 27.4 217 211-436 53-332 (351)
16 2f8y_A Notch homolog 1, transl 100.0 1.1E-36 3.9E-41 282.3 20.7 203 204-438 12-216 (223)
17 1wdy_A 2-5A-dependent ribonucl 100.0 6.7E-36 2.3E-40 285.5 26.3 216 215-434 4-240 (285)
18 3eu9_A Huntingtin-interacting 100.0 3.4E-36 1.2E-40 280.7 23.6 223 211-438 4-235 (240)
19 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-35 3.6E-40 293.0 24.5 219 215-438 23-305 (351)
20 4g8k_A 2-5A-dependent ribonucl 100.0 5.5E-35 1.9E-39 288.8 28.5 219 214-437 57-297 (337)
21 1s70_B 130 kDa myosin-binding 100.0 4.7E-36 1.6E-40 290.5 13.6 209 212-421 36-277 (299)
22 2rfa_A Transient receptor pote 100.0 1.5E-34 5.1E-39 269.9 23.2 190 215-436 2-220 (232)
23 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-34 4.2E-39 280.8 22.9 219 212-437 11-246 (285)
24 3hra_A Ankyrin repeat family p 100.0 9E-34 3.1E-38 258.6 25.0 191 214-436 3-201 (201)
25 4gpm_A Engineered protein OR26 100.0 3.8E-34 1.3E-38 257.0 21.4 156 279-438 6-161 (169)
26 1oy3_D Transcription factor in 100.0 2.5E-34 8.5E-39 275.2 20.4 191 243-438 3-250 (282)
27 3kea_A K1L; tropism, ANK repea 100.0 7.1E-35 2.4E-39 282.6 15.3 221 199-435 15-243 (285)
28 2xai_A ASB-9, ankyrin repeat a 100.0 2.5E-34 8.6E-39 274.6 18.9 216 203-423 23-252 (261)
29 2f8y_A Notch homolog 1, transl 100.0 2E-33 6.7E-38 260.5 24.1 175 201-403 43-218 (223)
30 4gpm_A Engineered protein OR26 100.0 1.3E-33 4.4E-38 253.6 20.9 159 218-404 6-164 (169)
31 1ikn_D Protein (I-kappa-B-alph 100.0 5.3E-35 1.8E-39 274.2 12.1 198 212-437 4-208 (236)
32 3ljn_A Hypothetical protein; a 100.0 7.9E-35 2.7E-39 290.7 13.8 217 203-422 40-302 (364)
33 2fo1_E LIN-12 protein; beta-ba 100.0 4.6E-34 1.6E-38 287.3 17.8 220 211-437 89-337 (373)
34 3b7b_A Euchromatic histone-lys 100.0 6.8E-33 2.3E-37 259.2 24.1 193 240-437 2-201 (237)
35 2etb_A Transient receptor pote 100.0 2.1E-34 7.3E-39 273.4 13.5 193 216-436 2-244 (256)
36 3aji_A 26S proteasome non-ATPa 100.0 4.1E-33 1.4E-37 259.8 20.0 191 211-402 35-231 (231)
37 1yyh_A HN1;, notch 1, ankyrin 100.0 9.5E-33 3.3E-37 262.2 21.7 187 212-399 53-246 (253)
38 4g8k_A 2-5A-dependent ribonucl 100.0 1.9E-32 6.4E-37 270.7 24.4 219 213-435 22-261 (337)
39 3kea_A K1L; tropism, ANK repea 100.0 1.5E-33 5E-38 273.4 15.5 203 225-437 9-219 (285)
40 1k1a_A B-cell lymphoma 3-encod 100.0 2.1E-32 7.3E-37 256.0 22.6 189 244-437 4-207 (241)
41 2pnn_A Transient receptor pote 100.0 2.7E-33 9.1E-38 268.6 13.2 200 210-437 7-257 (273)
42 3jxi_A Vanilloid receptor-rela 100.0 8.5E-33 2.9E-37 262.7 15.2 195 214-436 3-248 (260)
43 2dzn_A Probable 26S proteasome 100.0 8E-32 2.7E-36 250.2 20.6 183 250-436 2-198 (228)
44 2rfm_A Putative ankyrin repeat 100.0 5E-32 1.7E-36 246.1 17.9 163 270-436 28-190 (192)
45 1sw6_A Regulatory protein SWI6 100.0 2.5E-33 8.5E-38 277.2 10.0 211 205-420 41-327 (327)
46 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.9E-31 6.3E-36 237.8 20.5 159 274-436 11-169 (169)
47 3eu9_A Huntingtin-interacting 100.0 6.1E-31 2.1E-35 245.0 22.5 204 201-404 27-238 (240)
48 3v31_A Ankyrin repeat family A 100.0 3.8E-31 1.3E-35 234.7 19.0 155 276-434 2-156 (167)
49 1s70_B 130 kDa myosin-binding 100.0 4E-31 1.4E-35 255.8 20.8 212 222-437 4-256 (299)
50 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.6E-31 1.6E-35 232.5 17.8 158 276-438 4-162 (162)
51 4b93_B Ankyrin repeat domain-c 100.0 3.3E-32 1.1E-36 262.2 11.0 192 211-403 47-246 (269)
52 1awc_B Protein (GA binding pro 100.0 1.1E-30 3.9E-35 228.7 18.6 151 278-433 3-153 (153)
53 2rfa_A Transient receptor pote 100.0 2E-30 6.9E-35 241.9 20.2 162 276-437 2-182 (232)
54 4hbd_A KN motif and ankyrin re 100.0 6.2E-31 2.1E-35 253.8 17.1 165 270-438 104-275 (276)
55 3v30_A DNA-binding protein rfx 100.0 1.1E-30 3.7E-35 232.9 16.6 138 275-412 34-171 (172)
56 3v30_A DNA-binding protein rfx 100.0 2.4E-30 8.1E-35 230.7 18.5 155 277-435 2-157 (172)
57 3twr_A Tankyrase-2; ankyrin re 100.0 2.2E-30 7.5E-35 229.3 15.2 160 273-437 4-164 (165)
58 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.9E-30 2E-34 225.4 17.8 157 216-401 5-162 (162)
59 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-30 4.1E-35 244.5 14.1 184 210-421 39-231 (236)
60 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.6E-29 5.3E-34 225.3 19.5 160 212-399 10-169 (169)
61 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.1E-29 3.9E-34 222.4 18.4 153 277-435 2-155 (156)
62 3f6q_A Integrin-linked protein 100.0 5.1E-30 1.7E-34 230.4 15.5 159 275-437 3-162 (179)
63 3v31_A Ankyrin repeat family A 100.0 1.3E-29 4.4E-34 224.8 17.8 161 215-403 2-162 (167)
64 2rfm_A Putative ankyrin repeat 100.0 1.2E-29 4.1E-34 230.4 17.9 161 211-399 30-190 (192)
65 3hra_A Ankyrin repeat family p 100.0 8.2E-29 2.8E-33 225.6 22.2 163 209-399 32-201 (201)
66 2pnn_A Transient receptor pote 100.0 5.1E-30 1.7E-34 245.7 14.8 186 212-414 50-272 (273)
67 3f6q_A Integrin-linked protein 100.0 3.5E-29 1.2E-33 224.9 17.4 167 215-409 4-171 (179)
68 2etb_A Transient receptor pote 100.0 1.3E-29 4.4E-34 240.4 14.1 175 212-403 39-248 (256)
69 1sw6_A Regulatory protein SWI6 100.0 1.8E-30 6.2E-35 256.6 7.8 207 227-438 30-308 (327)
70 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.9E-30 9.8E-35 243.5 7.2 179 214-421 3-193 (239)
71 1awc_B Protein (GA binding pro 100.0 3.5E-28 1.2E-32 212.8 18.9 150 217-395 3-152 (153)
72 3jxi_A Vanilloid receptor-rela 100.0 2.1E-29 7.3E-34 239.2 11.8 173 214-403 44-252 (260)
73 3twr_A Tankyrase-2; ankyrin re 100.0 1.1E-28 3.7E-33 218.4 14.6 160 213-400 5-164 (165)
74 4hbd_A KN motif and ankyrin re 100.0 5.6E-29 1.9E-33 240.1 12.0 161 211-399 106-273 (276)
75 1bi7_B P16INK4A, MTS1, multipl 100.0 8.7E-29 3E-33 217.7 11.2 147 270-417 5-152 (156)
76 2vge_A RELA-associated inhibit 100.0 5.8E-30 2E-34 240.6 3.2 149 274-422 18-201 (229)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.1E-27 3.8E-32 209.6 17.5 153 216-398 2-155 (156)
78 1d9s_A Cyclin-dependent kinase 100.0 2.8E-28 9.6E-33 209.5 13.2 134 267-401 2-136 (136)
79 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.8E-28 6E-33 231.3 11.8 156 275-435 3-161 (239)
80 1d9s_A Cyclin-dependent kinase 99.9 2.7E-27 9.4E-32 203.3 12.3 133 300-437 2-135 (136)
81 3t8k_A Uncharacterized protein 99.9 1.1E-27 3.8E-32 218.1 9.4 155 277-433 6-178 (186)
82 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.2E-26 1.4E-30 191.2 16.5 126 276-401 1-126 (126)
83 2jab_A H10-2-G3; HER2, darpin, 99.9 6.2E-26 2.1E-30 194.8 15.7 124 276-399 13-136 (136)
84 2jab_A H10-2-G3; HER2, darpin, 99.9 1.5E-25 5.1E-30 192.4 15.2 126 307-436 11-136 (136)
85 3t8k_A Uncharacterized protein 99.9 6.1E-27 2.1E-31 213.2 6.2 163 216-407 6-185 (186)
86 3c5r_A BARD-1, BRCA1-associate 99.9 2.1E-26 7.3E-31 197.6 8.5 131 300-435 1-131 (137)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.5E-25 2.2E-29 183.9 15.9 125 309-437 1-125 (126)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 2.9E-25 1E-29 195.1 12.2 130 304-438 6-136 (156)
89 3c5r_A BARD-1, BRCA1-associate 99.9 9.1E-26 3.1E-30 193.6 8.8 133 267-400 1-133 (137)
90 2b0o_E UPLC1; arfgap, structur 99.9 2.5E-24 8.5E-29 210.6 18.2 140 277-422 151-299 (301)
91 2aja_A Ankyrin repeat family p 99.9 5.2E-27 1.8E-31 236.5 -2.3 204 216-436 92-342 (376)
92 3deo_A Signal recognition part 99.9 1.3E-24 4.5E-29 196.1 12.7 140 274-435 41-181 (183)
93 3ehr_A Osteoclast-stimulating 99.9 5E-25 1.7E-29 204.6 8.9 136 274-409 70-206 (222)
94 3ui2_A Signal recognition part 99.9 2.4E-24 8.2E-29 203.9 12.9 138 275-434 43-181 (244)
95 2vge_A RELA-associated inhibit 99.9 3.3E-24 1.1E-28 201.2 12.4 139 293-435 1-145 (229)
96 3aaa_C Myotrophin, protein V-1 99.9 1.1E-23 3.8E-28 177.3 14.2 110 307-416 4-113 (123)
97 3aaa_C Myotrophin, protein V-1 99.9 6.2E-24 2.1E-28 178.8 11.2 117 274-390 4-120 (123)
98 3ehr_A Osteoclast-stimulating 99.9 4.2E-24 1.4E-28 198.3 8.2 128 306-437 69-197 (222)
99 3deo_A Signal recognition part 99.9 5.5E-25 1.9E-29 198.6 1.7 117 307-424 41-158 (183)
100 1dcq_A PYK2-associated protein 99.9 2E-22 6.7E-27 194.8 17.7 190 212-402 62-264 (278)
101 3lvq_E ARF-GAP with SH3 domain 99.9 8.3E-23 2.8E-27 213.2 15.9 131 278-408 133-272 (497)
102 3ui2_A Signal recognition part 99.9 6.3E-23 2.1E-27 194.1 11.8 142 214-401 43-185 (244)
103 2aja_A Ankyrin repeat family p 99.9 7.5E-25 2.6E-29 220.8 -2.1 146 278-435 93-247 (376)
104 3jue_A Arfgap with coiled-coil 99.9 1.9E-22 6.4E-27 202.6 14.6 147 275-421 197-349 (368)
105 1dcq_A PYK2-associated protein 99.9 4.5E-21 1.5E-25 185.3 22.5 179 256-438 40-263 (278)
106 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-22 6E-27 197.5 11.4 146 216-389 151-299 (301)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.3E-21 4.3E-26 156.6 12.8 92 310-401 2-93 (93)
108 2l6b_A NR1C; ankyrin, consensu 99.9 7.2E-22 2.5E-26 164.0 7.4 108 306-413 5-112 (115)
109 3jue_A Arfgap with coiled-coil 99.9 4.7E-21 1.6E-25 192.4 14.8 125 307-435 196-323 (368)
110 3lvq_E ARF-GAP with SH3 domain 99.8 6.1E-21 2.1E-25 199.0 14.9 124 311-438 133-265 (497)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.1E-20 3.7E-25 151.1 12.6 93 276-368 1-93 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.8 4.9E-21 1.7E-25 158.9 8.5 109 272-380 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 1.9E-18 6.6E-23 142.7 9.7 90 339-432 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 3.9E-18 1.3E-22 140.8 11.1 90 306-395 20-109 (110)
115 2d6f_A Glutamyl-tRNA(Gln) amid 98.4 9E-09 3.1E-13 104.0 -3.8 72 99-181 326-406 (435)
116 2him_A L-asparaginase 1; hydro 98.4 8.5E-09 2.9E-13 102.1 -4.3 72 99-181 254-336 (358)
117 1zq1_A Glutamyl-tRNA(Gln) amid 98.4 8.3E-09 2.8E-13 104.4 -4.5 72 99-181 329-409 (438)
118 1wls_A L-asparaginase; structu 98.4 9.6E-09 3.3E-13 100.7 -4.1 72 99-181 224-306 (328)
119 4pga_A Glutaminase-asparaginas 98.3 2.1E-08 7E-13 98.5 -4.9 70 99-181 246-324 (337)
120 1nns_A L-asparaginase II; amid 98.2 3E-08 1E-12 97.2 -4.6 70 99-181 236-313 (326)
121 1wsa_A Asparaginase, asparagin 98.2 3.7E-08 1.2E-12 96.7 -4.9 70 99-181 240-317 (330)
122 3nxk_A Cytoplasmic L-asparagin 98.2 9.9E-08 3.4E-12 93.5 -3.1 68 99-181 246-321 (334)
123 1agx_A Glutaminase-asparaginas 98.1 1.1E-07 3.6E-12 93.4 -4.0 70 99-181 240-318 (331)
124 2wlt_A L-asparaginase; hydrola 98.0 1.1E-07 3.9E-12 93.2 -5.6 69 99-181 243-319 (332)
125 1o7j_A L-asparaginase; atomic 97.6 2.1E-06 7.2E-11 84.0 -4.7 65 99-181 242-314 (327)
126 4g26_A Pentatricopeptide repea 60.2 9.8 0.00033 38.7 5.5 147 280-435 32-204 (501)
127 4g26_A Pentatricopeptide repea 26.1 81 0.0028 31.8 5.7 100 291-396 91-198 (501)
128 2kyg_C Protein CBFA2T1; protei 25.6 52 0.0018 20.4 2.5 21 107-127 7-28 (38)
129 3zrh_A Ubiquitin thioesterase 24.0 1.6E+02 0.0054 29.0 6.9 50 282-331 27-90 (454)
No 1
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.9e-39 Score=300.06 Aligned_cols=224 Identities=25% Similarity=0.302 Sum_probs=215.9
Q ss_pred CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643 210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS 283 (439)
Q Consensus 210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~ 283 (439)
...+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|++.+++++..+..|.||||+
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccC-CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence 4566789999999999999999999999999999998 89999999 7889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Q 013643 284 LAASGEFYFVDALLKHN-VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKIL 362 (439)
Q Consensus 284 Aa~~g~~eivk~LL~~g-adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~L 362 (439)
|+..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999999999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434 (439)
Q Consensus 363 l~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~ 434 (439)
+++|++++..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+...+.++++.|.+
T Consensus 164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999888888888865
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.9e-39 Score=308.46 Aligned_cols=223 Identities=19% Similarity=0.194 Sum_probs=180.4
Q ss_pred CCCCCCCcHHHHHHhcC-------------cHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcc
Q 013643 211 TQRVPPKNPKWAVYGRG-------------LDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLA 271 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g-------------~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~ 271 (439)
..+..|+||||.|+..| +.+++++|++.|++++......|.|||| ..+++++|++.|++++
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 84 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 45667999999999977 8999999999999997664389999999 7889999999999999
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHH
Q 013643 272 TATSKKWLPLHSLAASGEFYFVDALLKHNV-DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYA 350 (439)
Q Consensus 272 ~~d~~g~tpLh~Aa~~g~~eivk~LL~~ga-din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A 350 (439)
..+..|+||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 164 (253)
T 1yyh_A 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164 (253)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 999999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643 351 VQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK 430 (439)
Q Consensus 351 ~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik 430 (439)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+. +|++
T Consensus 165 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~----~i~~ 240 (253)
T 1yyh_A 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH----DIVR 240 (253)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCH----HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred HHhcCCC
Q 013643 431 LLKQLPT 437 (439)
Q Consensus 431 ~L~~~~~ 437 (439)
+|.+...
T Consensus 241 ~l~~~~~ 247 (253)
T 1yyh_A 241 LLDLEHH 247 (253)
T ss_dssp HHHC---
T ss_pred HHHHHhh
Confidence 9987543
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-37 Score=297.22 Aligned_cols=221 Identities=23% Similarity=0.220 Sum_probs=212.0
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHH
Q 013643 213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAA 286 (439)
Q Consensus 213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~ 286 (439)
+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|++.+++++..+..|+||||+|+.
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 114 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHH
Confidence 5678999999999999999999999999999998 89999999 7889999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCccc----------CCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCC
Q 013643 287 SGEFYFVDALLKHNVDINAV----------DKDGLTALHKAIIGKKQAVTNYLLRE-SANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 287 ~g~~eivk~LL~~gadin~~----------d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
.|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+|+..++
T Consensus 115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~ 194 (285)
T 1wdy_A 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 194 (285)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc
Confidence 99999999999999999877 77899999999999999999999997 99999999999999999999999
Q ss_pred ----HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643 356 ----SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK 430 (439)
Q Consensus 356 ----~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik 430 (439)
.+++++|+++|++++.++..|+||||+|+..|+.+++++|++ +|++++.+|..|.|||++|+..|+. ++++
T Consensus 195 ~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~----~i~~ 270 (285)
T 1wdy_A 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAE 270 (285)
T ss_dssp TTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH----HHHH
T ss_pred cchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcH----HHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999995 9999
Q ss_pred HHhcCCCC
Q 013643 431 LLKQLPTS 438 (439)
Q Consensus 431 ~L~~~~~~ 438 (439)
+|++.+.+
T Consensus 271 ~Ll~~Ga~ 278 (285)
T 1wdy_A 271 LLCKRGAS 278 (285)
T ss_dssp HHHHHSSC
T ss_pred HHHHcCCC
Confidence 99987653
No 4
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=313.97 Aligned_cols=220 Identities=21% Similarity=0.237 Sum_probs=181.8
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCC--------CCCCCCCCCCcCC-------hHHHHHHHhhcCCCcccCCCC
Q 013643 212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDP--------PDKKSDGPRRKLF-------TKEEKVLLNKKLPHLATATSK 276 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~--------n~~~~~~g~t~L~-------~~~~~~lL~~~~~d~~~~d~~ 276 (439)
.+..+.++|+.|+..|+.++|++|++.|++. +..+ ..|.|||+ ...+..+|+..|++++..|..
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~-~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAAD-PEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTTCCCTT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccC-ccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 3455678999999999999999999998763 4444 67889988 234678889999999999999
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Q 013643 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASS 356 (439)
Q Consensus 277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~ 356 (439)
|+||||+||..|+.+++++|++.|++++..+..|.||+++|+..++.+++++|++.|++++.+|..|.||||+|+..|+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 357 PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 357 ~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
++|++|+++|+++|.++..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+++|+ +.+++++|.+.
T Consensus 166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~---i~~lL~~l~~~ 241 (269)
T 4b93_B 166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK---IMELLQVVPSC 241 (269)
T ss_dssp GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH---HHHHTTC----
T ss_pred HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc---HHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987765 24555555443
No 5
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.3e-39 Score=299.65 Aligned_cols=223 Identities=23% Similarity=0.191 Sum_probs=206.1
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHh----CCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchH
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNS----GNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLP 280 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~----~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tp 280 (439)
..+..|.||||.|+..|+.+++++|++ .|++++..+ ..|.|||+ +.+++++|++.|++++..+..|+||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc-ccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 356689999999999999999999997 899999998 89999999 7899999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCC----CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHcCC
Q 013643 281 LHSLAASGEFYFVDALLKHNV----DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQTAS 355 (439)
Q Consensus 281 Lh~Aa~~g~~eivk~LL~~ga----din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~~g~ 355 (439)
||+|+..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 888999999999999999999999999999999999988 789999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+. +|++.|.+.
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~i~~~l~~~ 238 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI----DILRGKATR 238 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH----HHHTC----
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH----HHHhhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 999999887
Q ss_pred CCC
Q 013643 436 PTS 438 (439)
Q Consensus 436 ~~~ 438 (439)
+.|
T Consensus 239 ~aS 241 (241)
T 1k1a_A 239 PAS 241 (241)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=300.63 Aligned_cols=214 Identities=20% Similarity=0.187 Sum_probs=200.9
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643 215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASG 288 (439)
Q Consensus 215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g 288 (439)
.|+||||.|+..|+.+++++|++.|++++..+ ..|.|||| +.+++++|++.|++++..+..|+||||+|+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 58999999999999999999999999999999 89999999 778999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Q 013643 289 EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD 368 (439)
Q Consensus 289 ~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad 368 (439)
+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 81 ~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 159 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159 (261)
T ss_dssp CHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 99999999999999985 45699999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 369 in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
++. +..|+||||+|+..|+.+++++|+++|+|++.+|..|+|||++|+..++ ++++|++...
T Consensus 160 ~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~------~~~~ll~~~~ 221 (261)
T 2xai_A 160 VNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP------LAQLFLEREG 221 (261)
T ss_dssp TTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTCT------HHHHHHHC-C
T ss_pred CCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcccccc------HHHHHHhccC
Confidence 996 8899999999999999999999999999999999999999999996654 7777777543
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-37 Score=299.26 Aligned_cols=217 Identities=21% Similarity=0.187 Sum_probs=205.9
Q ss_pred CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643 210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS 283 (439)
Q Consensus 210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~ 283 (439)
...+..|+||||.|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|++.+++++..+..|+||||+
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 4677889999999999999999999999999999998 89999999 7889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643 284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363 (439)
Q Consensus 284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll 363 (439)
|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++|++|+
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 210 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL 210 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999865 45999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 364 LYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 364 ~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
+.|++++. +..|+||||+|+..|+.+++++|+++|+|++.+|..|+|||++|+. +. +++++|++.
T Consensus 211 ~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~----~~~~~Ll~~ 275 (285)
T 3d9h_A 211 ESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ES----PLAQLFLER 275 (285)
T ss_dssp HTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TS----HHHHHHHHH
T ss_pred HCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--cc----HHHHHHHHh
Confidence 99999995 8899999999999999999999999999999999999999999993 33 788888875
No 8
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.4e-37 Score=297.80 Aligned_cols=211 Identities=19% Similarity=0.148 Sum_probs=185.1
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCC---CCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHH
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYD---PPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPL 281 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~---~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpL 281 (439)
..+..|+||||.|+..|+.+++++|++.|++ ++..+ ..|+|||| +.+++++|++.|++++..+..|+|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 4567899999999999999999999999998 77888 89999999 78899999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCC-----------------------------------------------CcccCCCCChHH
Q 013643 282 HSLAASGEFYFVDALLKHNVD-----------------------------------------------INAVDKDGLTAL 314 (439)
Q Consensus 282 h~Aa~~g~~eivk~LL~~gad-----------------------------------------------in~~d~~g~t~L 314 (439)
|+|+..|+.+++++|+++|++ ++..+..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 999999999999999998765 667788999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHH
Q 013643 315 HKAIIGKKQAVTNYLLRESANPFVVDED-GATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVK 393 (439)
Q Consensus 315 ~~Aa~~g~~~iv~~LL~~ga~v~~~d~~-g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~ 393 (439)
|+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus 163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 9999999999999999999999998854 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643 394 LLLIKGADKTLKNRDGLTPLDLCLYSGRD 422 (439)
Q Consensus 394 ~LL~~Gadi~~~d~~G~TpL~~A~~~g~~ 422 (439)
+|+++||+++.+|..|.|||++|......
T Consensus 243 ~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 243 LLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HHHHTTCCCCCCC----------------
T ss_pred HHHHcCCCcCcCCCcccccccccCCcccc
Confidence 99999999999999999999999987764
No 9
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.5e-37 Score=289.74 Aligned_cols=217 Identities=27% Similarity=0.312 Sum_probs=205.6
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhCCCC-CCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643 215 PPKNPKWAVYGRGLDDVSEFFNSGNYD-PPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS 287 (439)
Q Consensus 215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~ 287 (439)
.+.++|+.|+..|+.+++++|++.+.. ++..+ ..|.|||+ +.+++++|++.+++++..+..|+||||+|+..
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCC-CCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 467899999999999999999987654 55666 89999999 78899999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q 013643 288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNV 367 (439)
Q Consensus 288 g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~ga 367 (439)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643 368 DINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 368 din~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~ 436 (439)
+++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..++. +++++|++.+
T Consensus 164 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~lL~~~~ 228 (231)
T 3aji_A 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGL----ILKRLAEGEE 228 (231)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHH----HHHHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHH----HHHHHHcccc
Confidence 9999999999999999999999999999999999999999999999999988885 8999988754
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-36 Score=310.38 Aligned_cols=225 Identities=25% Similarity=0.246 Sum_probs=184.1
Q ss_pred cCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCc
Q 013643 205 SSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKW 278 (439)
Q Consensus 205 ~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~ 278 (439)
.+......+..|.|||+.|+..|+.+++++|++.|++++..+ ..|.|||+ ..++.++|++.+++++..+..|.
T Consensus 168 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 246 (437)
T 1n11_A 168 RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246 (437)
T ss_dssp TTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 333334555677888888888888888888888888887777 77888887 66778888888888888888888
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA 358 (439)
Q Consensus 279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i 358 (439)
||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus 247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 326 (437)
T 1n11_A 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 326 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643 359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434 (439)
Q Consensus 359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~ 434 (439)
|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|...|+. +++++|..
T Consensus 327 v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~----~~~~~l~~ 398 (437)
T 1n11_A 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI----SVTDVLKV 398 (437)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCH----HHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcH----HHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888888888884 66666654
No 11
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-36 Score=308.47 Aligned_cols=232 Identities=23% Similarity=0.276 Sum_probs=219.4
Q ss_pred HhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCC
Q 013643 202 FVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATS 275 (439)
Q Consensus 202 ~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~ 275 (439)
++.........+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|+..+.+++..+.
T Consensus 132 Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 210 (437)
T 1n11_A 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG-KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210 (437)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCT
T ss_pred HHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence 344444445566789999999999999999999999999999998 89999999 77999999999999999999
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
.|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 290 (437)
T 1n11_A 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
.+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+. +++++|++.
T Consensus 291 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~ 366 (437)
T 1n11_A 291 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT----DIVTLLLKN 366 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHT
T ss_pred HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH----HHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 999999987
Q ss_pred CCC
Q 013643 436 PTS 438 (439)
Q Consensus 436 ~~~ 438 (439)
+.+
T Consensus 367 ga~ 369 (437)
T 1n11_A 367 GAS 369 (437)
T ss_dssp TCC
T ss_pred cCC
Confidence 653
No 12
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.4e-37 Score=310.60 Aligned_cols=219 Identities=16% Similarity=0.119 Sum_probs=206.8
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL 284 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A 284 (439)
..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|++.+++++. ..|+||||+|
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A 91 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLA 91 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHH
Confidence 456678999999999999999999999999999999 89999999 78999999999996654 5789999999
Q ss_pred HHcCCHHHHHHHHhC----CCCCcc-----------------cCCCCChHHHHHHHcC--CHHHHHHHHHCCCCCCccCC
Q 013643 285 AASGEFYFVDALLKH----NVDINA-----------------VDKDGLTALHKAIIGK--KQAVTNYLLRESANPFVVDE 341 (439)
Q Consensus 285 a~~g~~eivk~LL~~----gadin~-----------------~d~~g~t~L~~Aa~~g--~~~iv~~LL~~ga~v~~~d~ 341 (439)
+..|+.+++++|+++ |++++. .+..|.||||+|+..| +.++|++|+++|++++.+|.
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~ 171 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence 999999999999999 888877 8889999999999999 99999999999999999999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCC-----CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643 342 DGATLLHYAVQTASSPAIKILLLYNVD-----INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416 (439)
Q Consensus 342 ~g~TpLh~A~~~g~~~iV~~Ll~~gad-----in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A 416 (439)
.|.||||+|+..|+.++|++|+++|++ ++..|..|+||||+|+..|+.++|++|+++|+|++.+|..|.|||++|
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcchHHHHHHHHhcCC
Q 013643 417 LYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 417 ~~~g~~~~~~eiik~L~~~~ 436 (439)
+..|+. +++++|++.+
T Consensus 252 ~~~g~~----~~v~~Ll~~~ 267 (364)
T 3ljn_A 252 VRAAMV----LLTKELLQKT 267 (364)
T ss_dssp HHTCCH----HHHHHHHHHS
T ss_pred HHhChH----HHHHHHHHcC
Confidence 999995 9999998764
No 13
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-37 Score=311.16 Aligned_cols=220 Identities=22% Similarity=0.249 Sum_probs=207.9
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHH--------hCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCch
Q 013643 214 VPPKNPKWAVYGRGLDDVSEFFN--------SGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWL 279 (439)
Q Consensus 214 ~~g~t~l~~A~~~g~~eiv~~Ll--------~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~t 279 (439)
..|+||||+|+..|+.+++++|+ +.|+++|..+ ..|.|||| +.+++++|++.|++++..+..|+|
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t 201 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence 57999999999999998888776 8999999999 89999999 788999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCC---CCCcccCCCCChHHHHHHHcC---CHHHHHHHHHCCCCCCc--------cCCCCCC
Q 013643 280 PLHSLAASGEFYFVDALLKHN---VDINAVDKDGLTALHKAIIGK---KQAVTNYLLRESANPFV--------VDEDGAT 345 (439)
Q Consensus 280 pLh~Aa~~g~~eivk~LL~~g---adin~~d~~g~t~L~~Aa~~g---~~~iv~~LL~~ga~v~~--------~d~~g~T 345 (439)
|||+|+..|+.+++++|++++ ++++..+..|.||||+|+..+ +.+++++|+++|++++. .+..|.|
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t 281 (373)
T 2fo1_E 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence 999999999999999999998 899999999999999999998 89999999999999886 5678999
Q ss_pred HHHHHHHcCCHHHHHHHHhCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcch
Q 013643 346 LLHYAVQTASSPAIKILLLYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR 424 (439)
Q Consensus 346 pLh~A~~~g~~~iV~~Ll~~g-adin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~ 424 (439)
|||+|+..|+.++|++|++.| ++++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|.|||++|+..|+.
T Consensus 282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~-- 359 (373)
T 2fo1_E 282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH-- 359 (373)
T ss_dssp THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH--
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCH--
Confidence 999999999999999999875 99999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHHHHHhcCCCC
Q 013643 425 TFGMIKLLKQLPTS 438 (439)
Q Consensus 425 ~~eiik~L~~~~~~ 438 (439)
+|+++|+++...
T Consensus 360 --~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 360 --NIVDIFDRCRPE 371 (373)
T ss_dssp --HHHHHHHTTC--
T ss_pred --HHHHHHHhcCcc
Confidence 999999998765
No 14
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.6e-37 Score=283.82 Aligned_cols=212 Identities=24% Similarity=0.297 Sum_probs=198.4
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhCCCCCCC-CCCCCCCCcCC------hHHHHHHHhhcC--CCccc-CCCCCchHHHHHH
Q 013643 216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPD-KKSDGPRRKLF------TKEEKVLLNKKL--PHLAT-ATSKKWLPLHSLA 285 (439)
Q Consensus 216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~-~~~~~g~t~L~------~~~~~~lL~~~~--~d~~~-~d~~g~tpLh~Aa 285 (439)
|.||||.|+..|+.+++++|++.|.++.. .+ ..|.|||+ +.+++++|++.+ .+++. .+..|+||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 68999999999999999999999988776 55 89999999 788999999999 66666 7889999999999
Q ss_pred HcCCHHHHHHHHhCC--CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643 286 ASGEFYFVDALLKHN--VDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363 (439)
Q Consensus 286 ~~g~~eivk~LL~~g--adin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll 363 (439)
..|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 364 LYN-VDINLQDNDGWTPLHLAVQARRTDIVKLLL-IKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 364 ~~g-adin~~d~~G~TpLh~A~~~g~~eiv~~LL-~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
+.| ++++.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|.|||++|+.. +++++|+++
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~-------~~~~~l~~~ 227 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE-------QVKKFFLNN 227 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST-------THHHHHHTT
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH-------HHHHHHHhc
Confidence 999 999999999999999999999999999999 89999999999999999999643 467888764
No 15
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.4e-36 Score=295.08 Aligned_cols=217 Identities=25% Similarity=0.269 Sum_probs=202.0
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL 284 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A 284 (439)
..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.|||| +.+++++|++.+++++..+..|+||||+|
T Consensus 53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A 131 (351)
T 3utm_A 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD-KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA 131 (351)
T ss_dssp CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 455678999999999999999999999999999999 89999999 78999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCcccC------------------------------------------------------CCC
Q 013643 285 AASGEFYFVDALLKHNVDINAVD------------------------------------------------------KDG 310 (439)
Q Consensus 285 a~~g~~eivk~LL~~gadin~~d------------------------------------------------------~~g 310 (439)
+..|+.+++++|+++|++++..+ ..|
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 211 (351)
T 3utm_A 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence 99999999999999999987644 456
Q ss_pred ChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC
Q 013643 311 LTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQAR 387 (439)
Q Consensus 311 ~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g 387 (439)
.||||+|+.. +..+++++|+++|++++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus 212 ~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291 (351)
T ss_dssp CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 7999999998 5589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643 388 RTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 388 ~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~ 436 (439)
+.++|++|+++|+|++.+|..|.||+++| + .+++++|.+..
T Consensus 292 ~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~----~~~~~~l~~~~ 332 (351)
T 3utm_A 292 HLQTCRLLLSYGSDPSIISLQGFTAAQMG----N----EAVQQILSEST 332 (351)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHS----C----HHHHHHHHHC-
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCChhhhh----h----HHHHHHHHhcc
Confidence 99999999999999999999999999998 3 37888887654
No 16
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.1e-36 Score=282.34 Aligned_cols=203 Identities=20% Similarity=0.224 Sum_probs=185.7
Q ss_pred hcCCCCCCC-CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHH
Q 013643 204 NSSSSTCTQ-RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLH 282 (439)
Q Consensus 204 ~~~~~~~~~-~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh 282 (439)
..+...... +..|.||||.|+..|+.+++++|++.|++++..+ ..|+||||
T Consensus 12 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~L~ 63 (223)
T 2f8y_A 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----------------------------NMGRTPLH 63 (223)
T ss_dssp ETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHH
T ss_pred HcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------------------CCCCCHHH
Confidence 344443332 5778899999999999999999998887776544 56779999
Q ss_pred HHHHcCCHHHHHHHHhCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Q 013643 283 SLAASGEFYFVDALLKHNV-DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKI 361 (439)
Q Consensus 283 ~Aa~~g~~eivk~LL~~ga-din~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~ 361 (439)
+|+..|+.+++++|+++++ +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus 64 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 143 (223)
T 2f8y_A 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 143 (223)
T ss_dssp HHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 9999999999999999987 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 362 Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. +|+++|++++..
T Consensus 144 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~~~g~~ 216 (223)
T 2f8y_A 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH----DIVRLLDEYNLV 216 (223)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCS
T ss_pred HHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch----HHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999995 999999998754
No 17
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.7e-36 Score=285.49 Aligned_cols=216 Identities=24% Similarity=0.255 Sum_probs=207.5
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643 215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASG 288 (439)
Q Consensus 215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g 288 (439)
.|.|+|+.|+..|+.+++++|++.|++++......|.|||+ ..+++++|++.+++++..+..|.||||+|+..|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 46799999999999999999999999999884488999999 789999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc----------CCCCCCHHHHHHHcCCHHH
Q 013643 289 EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV----------DEDGATLLHYAVQTASSPA 358 (439)
Q Consensus 289 ~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~----------d~~g~TpLh~A~~~g~~~i 358 (439)
+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.++
T Consensus 84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 163 (285)
T 1wdy_A 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163 (285)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999877 7789999999999999999
Q ss_pred HHHHHhC-CCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643 359 IKILLLY-NVDINLQDNDGWTPLHLAVQARR----TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433 (439)
Q Consensus 359 V~~Ll~~-gadin~~d~~G~TpLh~A~~~g~----~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~ 433 (439)
+++|++. |++++..+..|+||||+|+..++ .+++++|+++|++++.+|..|.||||+|+..|+. +++++|+
T Consensus 164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll 239 (285)
T 1wdy_A 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL----GLVQRLL 239 (285)
T ss_dssp HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH----HHHHHHH
T ss_pred HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH----HHHHHHH
Confidence 9999998 99999999999999999999999 9999999999999999999999999999999995 9999999
Q ss_pred c
Q 013643 434 Q 434 (439)
Q Consensus 434 ~ 434 (439)
+
T Consensus 240 ~ 240 (285)
T 1wdy_A 240 E 240 (285)
T ss_dssp H
T ss_pred h
Confidence 8
No 18
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=280.66 Aligned_cols=223 Identities=23% Similarity=0.250 Sum_probs=208.7
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCC-CCchHHHH
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATS-KKWLPLHS 283 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~-~g~tpLh~ 283 (439)
..+..+.++|+.|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|++.+.+++.... .|+||||+
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD-KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCC-CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 345567899999999999999999999999999998 89999999 78999999999999886654 49999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC-HHHHHHH
Q 013643 284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS-SPAIKIL 362 (439)
Q Consensus 284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~-~~iV~~L 362 (439)
|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++ .+++++|
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L 162 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997776 8999999
Q ss_pred HhCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 363 LLYNVDINLQDN-DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 363 l~~gadin~~d~-~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
++.|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. +++++|++....
T Consensus 163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~v~~L~~~~~~ 235 (240)
T 3eu9_A 163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV----WMINHLQEARQA 235 (240)
T ss_dssp HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCH----HHHHHHHHHC--
T ss_pred HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHhhhc
Confidence 999999999987 999999999999999999999999999999999999999999999995 999999987654
No 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=293.01 Aligned_cols=219 Identities=23% Similarity=0.286 Sum_probs=205.1
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643 215 PPKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS 287 (439)
Q Consensus 215 ~g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~ 287 (439)
.+.++|+.|+..|+.++++.|+.. +++++..+ ..|.|||| +.+++++|++.|++++..+..|+||||+|+..
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSS-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC
Confidence 456899999999999988888775 89999998 89999999 88999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC---------------------------
Q 013643 288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD--------------------------- 340 (439)
Q Consensus 288 g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d--------------------------- 340 (439)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 102 g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~ 181 (351)
T 3utm_A 102 GHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence 99999999999999999999999999999999999999999999999987644
Q ss_pred ---------------------------CCCCCHHHHHHHc---CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHH
Q 013643 341 ---------------------------EDGATLLHYAVQT---ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD 390 (439)
Q Consensus 341 ---------------------------~~g~TpLh~A~~~---g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~e 390 (439)
..|.||||+|+.. +..+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 261 (351)
T 3utm_A 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261 (351)
T ss_dssp HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH
Confidence 4577999999999 5589999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 391 IVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 391 iv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
++++|+++|+|++.+|..|+||||+|+..|+. +++++|++.+.+
T Consensus 262 ~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~gad 305 (351)
T 3utm_A 262 VMEVLHKHGAKMNALDSLGQTALHRAALAGHL----QTCRLLLSYGSD 305 (351)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHcCCC
Confidence 99999999999999999999999999999995 999999997653
No 20
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.5e-35 Score=288.83 Aligned_cols=219 Identities=22% Similarity=0.208 Sum_probs=156.4
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643 214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS 287 (439)
Q Consensus 214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~ 287 (439)
..|+||||+|+..|+.+++++|+++|++++..+ ..+.++++ .......+...+.+++..+..|+||||+|+..
T Consensus 57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~ 135 (337)
T 4g8k_A 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 135 (337)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhc-cCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHc
Confidence 358999999999999999999999999998877 67777766 44555666667777777777777777777777
Q ss_pred CCHHHHHHHHhCCCCCccc----------CCCCChHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCC-
Q 013643 288 GEFYFVDALLKHNVDINAV----------DKDGLTALHKAIIGKKQAVTNYLLR-ESANPFVVDEDGATLLHYAVQTAS- 355 (439)
Q Consensus 288 g~~eivk~LL~~gadin~~----------d~~g~t~L~~Aa~~g~~~iv~~LL~-~ga~v~~~d~~g~TpLh~A~~~g~- 355 (439)
|+.+++++|+++|++++.. +..|.||||+|+..|+.++|++|++ .|++++.++..|.|+|+.++..+.
T Consensus 136 ~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~ 215 (337)
T 4g8k_A 136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 215 (337)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence 7777777777777766543 3346677777777777777777774 477777777777777766655433
Q ss_pred ---HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHH
Q 013643 356 ---SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL 431 (439)
Q Consensus 356 ---~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~ 431 (439)
..++++|+++|+++|.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+. +|+++
T Consensus 216 ~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~----~iv~~ 291 (337)
T 4g8k_A 216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK----KIAEL 291 (337)
T ss_dssp TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCH----HHHHH
T ss_pred ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCH----HHHHH
Confidence 346666677777777777777777777777777777777665 3667777777777777777777764 66666
Q ss_pred HhcCCC
Q 013643 432 LKQLPT 437 (439)
Q Consensus 432 L~~~~~ 437 (439)
|++.+.
T Consensus 292 Ll~~GA 297 (337)
T 4g8k_A 292 LCKRGA 297 (337)
T ss_dssp HHTTSC
T ss_pred HHHCCC
Confidence 666543
No 21
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.7e-36 Score=290.51 Aligned_cols=209 Identities=20% Similarity=0.259 Sum_probs=193.8
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHH
Q 013643 212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLA 285 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa 285 (439)
....+.|+|+.|+..|+.+++++|++.|++++..+ ..|.|||| +.+++++|++.|++++..+..|+||||+|+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 34467799999999999999999999999999998 89999999 788999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCC--------------------------c
Q 013643 286 ASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLR-ESANPF--------------------------V 338 (439)
Q Consensus 286 ~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~-~ga~v~--------------------------~ 338 (439)
..|+.+++++|+++|++++..+..|.||||+|+..++.+++++++. .+.+++ .
T Consensus 115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 194 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194 (299)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence 9999999999999999999999999999999999999999987775 344432 3
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 013643 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY 418 (439)
Q Consensus 339 ~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~ 418 (439)
.+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+.
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCC
Q 013643 419 SGR 421 (439)
Q Consensus 419 ~g~ 421 (439)
...
T Consensus 275 ~~~ 277 (299)
T 1s70_B 275 DIL 277 (299)
T ss_dssp GGG
T ss_pred HHH
Confidence 443
No 22
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=269.92 Aligned_cols=190 Identities=22% Similarity=0.198 Sum_probs=175.8
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643 215 PPKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV 293 (439)
Q Consensus 215 ~g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv 293 (439)
.|.||||.|+..|+.+++++|++. |++++..+ ..|+||||+|+..|+.+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~----------------------------~~g~t~L~~A~~~g~~~~v 53 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRG----------------------------AMGETALHIAALYDNLEAA 53 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCC----------------------------TTSCCHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCC----------------------------CCCCCHHHHHHHcCCHHHH
Confidence 478999999999999999999987 77776554 5678999999999999999
Q ss_pred HHHHhCCCCC-----cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-------------CCCCHHHHHHHcCC
Q 013643 294 DALLKHNVDI-----NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-------------DGATLLHYAVQTAS 355 (439)
Q Consensus 294 k~LL~~gadi-----n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~-------------~g~TpLh~A~~~g~ 355 (439)
++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+
T Consensus 54 ~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 133 (232)
T 2rfa_A 54 MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133 (232)
T ss_dssp HHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC
T ss_pred HHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCC
Confidence 9999999887 66778999999999999999999999999999998765 79999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC------CCCCCCCCCHHHHHHHcCCcchH
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV----KLLLIKGADK------TLKNRDGLTPLDLCLYSGRDTRT 425 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv----~~LL~~Gadi------~~~d~~G~TpL~~A~~~g~~~~~ 425 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++ ++|+++|+++ +.+|..|.|||++|+..|+.
T Consensus 134 ~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~--- 210 (232)
T 2rfa_A 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI--- 210 (232)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCH---
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCH---
Confidence 9999999999999999999999999999999999988 9999999998 58999999999999999995
Q ss_pred HHHHHHHhcCC
Q 013643 426 FGMIKLLKQLP 436 (439)
Q Consensus 426 ~eiik~L~~~~ 436 (439)
+++++|++.+
T Consensus 211 -~~v~~Ll~~g 220 (232)
T 2rfa_A 211 -VMFQHLMQKR 220 (232)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHhcC
Confidence 9999998753
No 23
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=280.82 Aligned_cols=219 Identities=21% Similarity=0.172 Sum_probs=179.3
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhCC-----------CCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCC
Q 013643 212 QRVPPKNPKWAVYGRGLDDVSEFFNSGN-----------YDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATAT 274 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~g-----------a~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d 274 (439)
-...|.|++|.|+..|+.+.+..++..+ ...+..+ ..|+|||| ..+++++|++.+++++..+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDA-VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSS-CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCC-ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 3456889999999999966555544332 2244555 89999999 7889999999999999999
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354 (439)
Q Consensus 275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g 354 (439)
..|+||||+||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRG 168 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHT
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999854 45999999999999
Q ss_pred CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434 (439)
Q Consensus 355 ~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~ 434 (439)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+. +++++|++
T Consensus 169 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~----~~v~~Ll~ 243 (285)
T 3d9h_A 169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE----ELACLLMD 243 (285)
T ss_dssp CHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH----HHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH----HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995 88999999999999995 99999998
Q ss_pred CCC
Q 013643 435 LPT 437 (439)
Q Consensus 435 ~~~ 437 (439)
.+.
T Consensus 244 ~ga 246 (285)
T 3d9h_A 244 FGA 246 (285)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 24
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=9e-34 Score=258.56 Aligned_cols=191 Identities=22% Similarity=0.251 Sum_probs=178.2
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHH
Q 013643 214 VPPKNPKWAVYGRGLDDVSEFFNSGNY-DPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYF 292 (439)
Q Consensus 214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~ei 292 (439)
..+.|+|+.|+..|+.++++.|+..+. +++. .+..|+||||+|+..|+.++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----------------------------~~~~g~t~L~~A~~~~~~~~ 54 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDE----------------------------VDTEGNTPLNIAVHNNDIEI 54 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTC----------------------------CCTTSCCHHHHHHHHTCHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCC----------------------------CCCCCCCHHHHHHHcCCHHH
Confidence 457899999999999999999998654 4444 34568899999999999999
Q ss_pred HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCc
Q 013643 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL-RESANPFVVDEDGATLLHYAVQTASSPAIKILLLYN-VDIN 370 (439)
Q Consensus 293 vk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL-~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~g-adin 370 (439)
+++|+++|++++..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++
T Consensus 55 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 134 (201)
T 3hra_A 55 AKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134 (201)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC
Confidence 99999999999999999999999999999999999999 567899999999999999999999999999999999 9999
Q ss_pred cCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643 371 LQDNDGWTPLHLAVQARR-----TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 371 ~~d~~G~TpLh~A~~~g~-----~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~ 436 (439)
.++..|+||||+|+..++ .+++++|+++|+|++.+|..|.|||++|+..|+. +++++|++++
T Consensus 135 ~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~G 201 (201)
T 3hra_A 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT----EISKILAQYN 201 (201)
T ss_dssp CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH----hHHHHHHhcC
Confidence 999999999999999998 9999999999999999999999999999999995 9999999864
No 25
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.8e-34 Score=257.00 Aligned_cols=156 Identities=36% Similarity=0.510 Sum_probs=150.4
Q ss_pred hHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA 358 (439)
Q Consensus 279 tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i 358 (439)
++|+.||..|+.++|++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
|++|+++|+++|.+|..|+||||+|++.|+.++|++|+++|+|++.+|..|+|||++|+..|+. +|+++|++.+.+
T Consensus 86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~----~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE----EVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHTC---
T ss_pred HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH----HHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999995 999999998753
No 26
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.5e-34 Score=275.16 Aligned_cols=191 Identities=27% Similarity=0.278 Sum_probs=179.4
Q ss_pred CCCCCCCCCCcCC------hHHHHHHHhhcCCC---cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChH
Q 013643 243 PDKKSDGPRRKLF------TKEEKVLLNKKLPH---LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA 313 (439)
Q Consensus 243 n~~~~~~g~t~L~------~~~~~~lL~~~~~d---~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~ 313 (439)
+..+ ..|+|||| ..+++++|++.+++ ++..+..|+||||+||..|+.+++++|+++|++++..+..|+||
T Consensus 3 ~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 3 GYVT-EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCC-TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CccC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4556 89999999 78899999998888 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------CCccCCCCCCH
Q 013643 314 LHKAIIGKKQAVTNYLLRESAN-----------------------------------------------PFVVDEDGATL 346 (439)
Q Consensus 314 L~~Aa~~g~~~iv~~LL~~ga~-----------------------------------------------v~~~d~~g~Tp 346 (439)
||+|+..|+.+++++|+++|++ ++.++..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 9999999999999999998765 67788899999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchH
Q 013643 347 LHYAVQTASSPAIKILLLYNVDINLQDND-GWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRT 425 (439)
Q Consensus 347 Lh~A~~~g~~~iV~~Ll~~gadin~~d~~-G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~ 425 (439)
||+|+..|+.++|++|+++|++++..+.. |+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~--- 238 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP--- 238 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc---
Confidence 99999999999999999999999999854 99999999999999999999999999999999999999999999995
Q ss_pred HHHHHHHhcCCCC
Q 013643 426 FGMIKLLKQLPTS 438 (439)
Q Consensus 426 ~eiik~L~~~~~~ 438 (439)
+|+++|++++.+
T Consensus 239 -~~v~~Ll~~ga~ 250 (282)
T 1oy3_D 239 -ILARLLRAHGAP 250 (282)
T ss_dssp -HHHHHHHHTTCC
T ss_pred -HHHHHHHHcCCC
Confidence 999999987653
No 27
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.1e-35 Score=282.65 Aligned_cols=221 Identities=14% Similarity=0.128 Sum_probs=198.8
Q ss_pred hHHHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCccc
Q 013643 199 FQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLAT 272 (439)
Q Consensus 199 ~~~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~ 272 (439)
+.+++.+. .....+..|.||||+|+..|+.+++++|++.|++++.. .|.|||| +.+++++|++.|++++.
T Consensus 15 v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~ 90 (285)
T 3kea_A 15 LKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQ 90 (285)
T ss_dssp HHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTC
T ss_pred HHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 44555554 34567788999999999999999999999999999876 4899999 77899999999999999
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC-ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643 273 ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDG-LTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351 (439)
Q Consensus 273 ~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g-~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~ 351 (439)
.+..|+||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+++... ..|.||||+|+
T Consensus 91 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~ 169 (285)
T 3kea_A 91 FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI 169 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH
Confidence 99999999999999999999999999999999999999 79999999999999999999999877322 28999999999
Q ss_pred HcCCHHHHHHHHhCCCCCccCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHH
Q 013643 352 QTASSPAIKILLLYNVDINLQDNDGWTP-LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIK 430 (439)
Q Consensus 352 ~~g~~~iV~~Ll~~gadin~~d~~G~Tp-Lh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik 430 (439)
..|+.++|++|+++|++++.++..|+|| ||+|+..|+.+++++|+++|+|++.+|. .|+..|+. ++++
T Consensus 170 ~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~----~iv~ 238 (285)
T 3kea_A 170 KNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDA----EIAK 238 (285)
T ss_dssp HTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCH----HHHH
T ss_pred HcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCH----HHHH
Confidence 9999999999999999999999999998 9999999999999999999999999884 55678885 8999
Q ss_pred HHhcC
Q 013643 431 LLKQL 435 (439)
Q Consensus 431 ~L~~~ 435 (439)
+|++.
T Consensus 239 ~Ll~~ 243 (285)
T 3kea_A 239 MIIEK 243 (285)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99874
No 28
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=274.56 Aligned_cols=216 Identities=16% Similarity=0.118 Sum_probs=197.4
Q ss_pred hhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCC
Q 013643 203 VNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSK 276 (439)
Q Consensus 203 l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~ 276 (439)
+..+......+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|++.+++++. +..
T Consensus 23 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~ 100 (261)
T 2xai_A 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESD 100 (261)
T ss_dssp HHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCT
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCC
Confidence 34444455666789999999999999999999999999999999 89999999 78899999999999985 456
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Q 013643 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASS 356 (439)
Q Consensus 277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~ 356 (439)
|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.
T Consensus 101 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~ 179 (261)
T 2xai_A 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASE 179 (261)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCH
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999995 88999999999999999
Q ss_pred HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--------CCCCCCCCCHHHHHHHcCCcc
Q 013643 357 PAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK--------TLKNRDGLTPLDLCLYSGRDT 423 (439)
Q Consensus 357 ~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi--------~~~d~~G~TpL~~A~~~g~~~ 423 (439)
+++++|+++|+|++.+|..|+||||+|+..+ +++++|+++++.. +.+|..|.||+|.|.......
T Consensus 180 ~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 180 ELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred HHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcH
Confidence 9999999999999999999999999999655 5999999988754 468999999999999988873
No 29
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2e-33 Score=260.47 Aligned_cols=175 Identities=22% Similarity=0.201 Sum_probs=160.3
Q ss_pred HHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCch
Q 013643 201 DFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNY-DPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWL 279 (439)
Q Consensus 201 ~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~t 279 (439)
.++..+......+..|.||||.|+..|+.+++++|++.+. +++. .+..|+|
T Consensus 43 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------------~~~~g~t 94 (223)
T 2f8y_A 43 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA----------------------------RMHDGTT 94 (223)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTC----------------------------CCTTCCC
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----------------------------CCCCCCc
Confidence 3344555556677889999999999999999999999875 4443 3456789
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH
Q 013643 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAI 359 (439)
Q Consensus 280 pLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV 359 (439)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus 95 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 174 (223)
T 2f8y_A 95 PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 174 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643 360 KILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT 403 (439)
Q Consensus 360 ~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~ 403 (439)
++|+++|++++.++..|+|||++|+..|+.+++++|+++|+...
T Consensus 175 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999998754
No 30
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.3e-33 Score=253.56 Aligned_cols=159 Identities=30% Similarity=0.372 Sum_probs=147.5
Q ss_pred cHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHH
Q 013643 218 NPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALL 297 (439)
Q Consensus 218 t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL 297 (439)
+.|+.|+..|+.++|++|++.|+++|..+ ..|+||||+|+..++.+++++|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d----------------------------~~g~t~l~~a~~~~~~~~~~~ll 57 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASD----------------------------SDGRTPLHHAAENGHKEVVKLLI 57 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------------------------CCCCCHHHHHHHcCCHHHHHHHH
Confidence 46899999999999999999998888665 45778999999999999999999
Q ss_pred hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCC
Q 013643 298 KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW 377 (439)
Q Consensus 298 ~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~ 377 (439)
++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+
T Consensus 58 ~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~ 137 (169)
T 4gpm_A 58 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR 137 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred hcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013643 378 TPLHLAVQARRTDIVKLLLIKGADKTL 404 (439)
Q Consensus 378 TpLh~A~~~g~~eiv~~LL~~Gadi~~ 404 (439)
||||+|++.|+.+++++|+++|||++-
T Consensus 138 TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 138 TPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHTC------
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 999999999999999999999999864
No 31
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5.3e-35 Score=274.22 Aligned_cols=198 Identities=24% Similarity=0.202 Sum_probs=165.5
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHH
Q 013643 212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFY 291 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~e 291 (439)
.+..|.||||.|+..|+.+++++|++.+... +.+++..+..|+||||+|+..|+.+
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------------~~~~~~~~~~g~t~L~~A~~~~~~~ 59 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGD------------------------LAFLNFQNNLQQTPLHLAVITNQPE 59 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----------------------------CCCCCCCCTTCCCHHHHHHHTTCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhcc------------------------HHHhhccCCCCCCHHHHHHHcCCHH
Confidence 4567899999999999999999998776421 2345556677888999999999999
Q ss_pred HHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHhC
Q 013643 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN------PFVVDEDGATLLHYAVQTASSPAIKILLLY 365 (439)
Q Consensus 292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~------v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~ 365 (439)
++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.++|++|+++
T Consensus 60 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 139 (236)
T 1ikn_D 60 IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 139 (236)
T ss_dssp HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 99999999999988888899999999999999999999988875 456677889999999999999999999999
Q ss_pred CCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 366 NVDINLQDN-DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 366 gadin~~d~-~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
|++++.++. .|+||||+|+..|+.++|++|+++|+|++.+|..|.|||++|+..|+. +++++|++.+.
T Consensus 140 g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~~~~~Ll~~ga 208 (236)
T 1ikn_D 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST----RIQQQLGQLTL 208 (236)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH----HHHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCch----HHHHHHHHcch
Confidence 999998887 899999999999999999999999999999999999999999998885 88888888765
No 32
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.9e-35 Score=290.75 Aligned_cols=217 Identities=17% Similarity=0.118 Sum_probs=198.4
Q ss_pred hhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhc----CCCccc
Q 013643 203 VNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKK----LPHLAT 272 (439)
Q Consensus 203 l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~----~~d~~~ 272 (439)
+..+......+..|.||||+|+..|+.+++++|++.|++++. ..|.|||+ +.+++++|++. +.+++.
T Consensus 40 l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 40 IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 334444456677899999999999999999999999996654 47899999 78899999988 888877
Q ss_pred -----------------CCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Q 013643 273 -----------------ATSKKWLPLHSLAASG--EFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES 333 (439)
Q Consensus 273 -----------------~d~~g~tpLh~Aa~~g--~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g 333 (439)
.+..|+||||+|+..| +.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 117 LLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 8889999999999999 999999999999999999999999999999999999999999999
Q ss_pred CC-----CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----
Q 013643 334 AN-----PFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL---- 404 (439)
Q Consensus 334 a~-----v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~---- 404 (439)
++ ++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.
T Consensus 197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 276 (364)
T 3ljn_A 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP 276 (364)
T ss_dssp SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCT
T ss_pred cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCc
Confidence 98 999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred --------CCCCCCCHHHHHHHcCCc
Q 013643 405 --------KNRDGLTPLDLCLYSGRD 422 (439)
Q Consensus 405 --------~d~~G~TpL~~A~~~g~~ 422 (439)
.+..|+||+++|+..|+.
T Consensus 277 ~~~~~~~~~~~~~~~~l~~aa~~~~~ 302 (364)
T 3ljn_A 277 YHNGTTVLPDRVVWLDFVPAAADPSK 302 (364)
T ss_dssp TBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred ccCcccccccccccccchhhhhccCH
Confidence 566789999999999976
No 33
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-34 Score=287.34 Aligned_cols=220 Identities=20% Similarity=0.200 Sum_probs=196.2
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------h--------HHHHHHHhhcCCCcccCCCC
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------T--------KEEKVLLNKKLPHLATATSK 276 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~--------~~~~~lL~~~~~d~~~~d~~ 276 (439)
..+..|.|+||.|+.++. +++++|+. .+++..+...|+|||| . ....+.|++.|++++..|..
T Consensus 89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~ 165 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165 (373)
T ss_dssp -----CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTT
T ss_pred CCCCCCccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Confidence 345678999999999776 78888865 5677776568999999 1 22344556899999999999
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC---CCCCccCCCCCCHHHHHHHc
Q 013643 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES---ANPFVVDEDGATLLHYAVQT 353 (439)
Q Consensus 277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g---a~v~~~d~~g~TpLh~A~~~ 353 (439)
|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++++ ++++..+..|.||||+|+..
T Consensus 166 g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~ 245 (373)
T 2fo1_E 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245 (373)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHS
T ss_pred CCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998 89999999999999999999
Q ss_pred C---CHHHHHHHHhCCCCCcc--------CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCC
Q 013643 354 A---SSPAIKILLLYNVDINL--------QDNDGWTPLHLAVQARRTDIVKLLLIKG-ADKTLKNRDGLTPLDLCLYSGR 421 (439)
Q Consensus 354 g---~~~iV~~Ll~~gadin~--------~d~~G~TpLh~A~~~g~~eiv~~LL~~G-adi~~~d~~G~TpL~~A~~~g~ 421 (439)
+ +.+++++|+++|++++. .+..|+||||+|+..|+.++|++|+++| ++++.+|..|.||||+|+..|+
T Consensus 246 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~ 325 (373)
T 2fo1_E 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 325 (373)
T ss_dssp CSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC
Confidence 8 89999999999999986 5779999999999999999999999876 9999999999999999999999
Q ss_pred cchHHHHHHHHhcCCC
Q 013643 422 DTRTFGMIKLLKQLPT 437 (439)
Q Consensus 422 ~~~~~eiik~L~~~~~ 437 (439)
. +++++|++.+.
T Consensus 326 ~----~iv~~Ll~~ga 337 (373)
T 2fo1_E 326 I----EVVMYLIQQGA 337 (373)
T ss_dssp H----HHHHHHHHTTC
T ss_pred H----HHHHHHHHcCC
Confidence 5 99999998764
No 34
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.8e-33 Score=259.24 Aligned_cols=193 Identities=24% Similarity=0.277 Sum_probs=185.1
Q ss_pred CCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChH
Q 013643 240 YDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA 313 (439)
Q Consensus 240 a~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~ 313 (439)
.+++..+ ..|.|||+ ..+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 2 MNFKMEH-QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC 80 (237)
T ss_dssp CCCCCSS-CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred CCccccc-CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence 4567777 89999999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 013643 314 LHKAIIGKKQAVTNYLLRES-ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIV 392 (439)
Q Consensus 314 L~~Aa~~g~~~iv~~LL~~g-a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv 392 (439)
||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 99999999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 393 KLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 393 ~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
++|+++|++++.+|..|.||||+|+..|+. +++++|++.+.
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga 201 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRY----DCVVLFLSRDS 201 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTC
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCH----hHHHHHHHcCC
Confidence 999999999999999999999999999995 99999998764
No 35
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.1e-34 Score=273.42 Aligned_cols=193 Identities=23% Similarity=0.240 Sum_probs=173.2
Q ss_pred CCcHHHHHHhcCcHH----HHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHc---C
Q 013643 216 PKNPKWAVYGRGLDD----VSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAAS---G 288 (439)
Q Consensus 216 g~t~l~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~---g 288 (439)
|+||||.|+..|+.+ ++++|++.|++++... ...+..|+||||+|+.. |
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~------------------------~~~d~~g~t~L~~A~~~~~~g 57 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA------------------------YTEGSTGKTCLMKAVLNLQDG 57 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG------------------------GSBTTTTBCHHHHHHHTCBTT
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCccccc------------------------ccCCCCCCCHHHHHHHccccc
Confidence 789999999999997 5667777777766511 01356788999999999 9
Q ss_pred CHHHHHHHHhCCCCCccc-----------CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-------------CC
Q 013643 289 EFYFVDALLKHNVDINAV-----------DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED-------------GA 344 (439)
Q Consensus 289 ~~eivk~LL~~gadin~~-----------d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~-------------g~ 344 (439)
+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|+++|++++.++.. |.
T Consensus 58 ~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~ 137 (256)
T 2etb_A 58 VNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE 137 (256)
T ss_dssp BCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCS
T ss_pred hHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCC
Confidence 999999999999887643 367999999999999999999999999999999886 99
Q ss_pred CHHHHHHHcCCHHHHHHHHh---CCCCCccCCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------CCC
Q 013643 345 TLLHYAVQTASSPAIKILLL---YNVDINLQDNDGWTPLHLAVQ--ARRTD-------IVKLLLIKGADK-------TLK 405 (439)
Q Consensus 345 TpLh~A~~~g~~~iV~~Ll~---~gadin~~d~~G~TpLh~A~~--~g~~e-------iv~~LL~~Gadi-------~~~ 405 (439)
||||+|+..|+.++|++|++ +|++++.+|..|+||||+|+. .++.+ ++++|+++|+|+ +.+
T Consensus 138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~ 217 (256)
T 2etb_A 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS 217 (256)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC
T ss_pred CHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc
Confidence 99999999999999999999 999999999999999999999 78888 999999999999 899
Q ss_pred CCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643 406 NRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 406 d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~ 436 (439)
|..|.||||+|+..|+. +++++|++++
T Consensus 218 d~~g~tpL~~A~~~g~~----~~v~~Ll~~g 244 (256)
T 2etb_A 218 NHQGLTPLKLAAKEGKI----EIFRHILQRE 244 (256)
T ss_dssp CTTSCCHHHHHHHTTCH----HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCCH----HHHHHHHhCC
Confidence 99999999999999995 9999998753
No 36
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.1e-33 Score=259.76 Aligned_cols=191 Identities=21% Similarity=0.200 Sum_probs=184.5
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHH
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSL 284 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~A 284 (439)
..+..|.||||.|+..|+.+++++|++.|++++..+ ..|.|||+ +.+++++|++.+++++..+..|+||||+|
T Consensus 35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 113 (231)
T 3aji_A 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 456679999999999999999999999999999998 89999999 77899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL 364 (439)
Q Consensus 285 a~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~ 364 (439)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 013643 365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402 (439)
Q Consensus 365 ~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi 402 (439)
+|++++.+|..|+||||+|+..++.+++++|+++|+++
T Consensus 194 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 194 QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 99999999999999999999999999999999998864
No 37
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.5e-33 Score=262.21 Aligned_cols=187 Identities=21% Similarity=0.178 Sum_probs=179.2
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCC-CcccCCCCCchHHHHH
Q 013643 212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLP-HLATATSKKWLPLHSL 284 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~-d~~~~d~~g~tpLh~A 284 (439)
.+..|+||||+|+..|+.+++++|++.|++++..+ ..|.|||+ ..+++++|++.+. +++..+..|+||||+|
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence 36789999999999999999999999999999998 89999999 6788999999887 8999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL 364 (439)
Q Consensus 285 a~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~ 364 (439)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 211 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643 365 YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399 (439)
Q Consensus 365 ~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G 399 (439)
+|++++.+|..|+|||++|++.|+.+|+++|....
T Consensus 212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999653
No 38
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.9e-32 Score=270.65 Aligned_cols=219 Identities=24% Similarity=0.256 Sum_probs=203.0
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHH
Q 013643 213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAA 286 (439)
Q Consensus 213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~ 286 (439)
...|.|+|+.|+..|+.++|++|++.|+++|..+...|+|||| +.+++++|+++|++++..+..+.++++.++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 3457899999999999999999999999999887567999999 7899999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCcc----------CCCCCCHHHHHHHcCCH
Q 013643 287 SGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV----------DEDGATLLHYAVQTASS 356 (439)
Q Consensus 287 ~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~----------d~~g~TpLh~A~~~g~~ 356 (439)
.+...++..+++.+++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999988754 44689999999999999
Q ss_pred HHHHHHHh-CCCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHH
Q 013643 357 PAIKILLL-YNVDINLQDNDGWTPLHLAVQARR----TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL 431 (439)
Q Consensus 357 ~iV~~Ll~-~gadin~~d~~G~TpLh~A~~~g~----~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~ 431 (439)
++|++|++ .|++++.++..|+|++++++..+. ..++++|+++|+|++.+|..|+||||+|+..|+. +++++
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~----~~v~~ 257 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL----GLVQR 257 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH----HHHHH
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhh----HHHHH
Confidence 99999995 699999999999999998887654 4689999999999999999999999999999995 88888
Q ss_pred HhcC
Q 013643 432 LKQL 435 (439)
Q Consensus 432 L~~~ 435 (439)
|++.
T Consensus 258 Ll~~ 261 (337)
T 4g8k_A 258 LLEQ 261 (337)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 8864
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.5e-33 Score=273.36 Aligned_cols=203 Identities=16% Similarity=0.111 Sum_probs=188.2
Q ss_pred hcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHHHh
Q 013643 225 GRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLK 298 (439)
Q Consensus 225 ~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~ 298 (439)
..+..+++++|.+. +++..+ ..|.|||| +.+++++|++.|++++.. +|+||||+|+..|+.+++++|++
T Consensus 9 ~~~~~~v~~lL~~~--~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 9 TWKSKQLKSFLSSK--DTFKAD-VHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp GCCHHHHHHHHHST--TTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHH
T ss_pred hcCHHHHHHHHHhC--CCCccC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHH
Confidence 34567888888876 577888 89999999 789999999999999887 48999999999999999999999
Q ss_pred CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCC
Q 013643 299 HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDG-ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGW 377 (439)
Q Consensus 299 ~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g-~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~ 377 (439)
+|++++..+..|+||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..|+
T Consensus 84 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~ 162 (285)
T 3kea_A 84 SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILL 162 (285)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHH
T ss_pred CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCc
Confidence 999999999999999999999999999999999999999999999 79999999999999999999999887433 2899
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 378 TPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP-LDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 378 TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~Tp-L~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
||||+|+..|+.+++++|+++|+|++.+|..|+|| ||+|+..|+. +++++|++.+.
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~ga 219 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDI 219 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCB
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCC
Confidence 99999999999999999999999999999999998 9999999995 99999998765
No 40
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.1e-32 Score=255.97 Aligned_cols=189 Identities=24% Similarity=0.244 Sum_probs=176.6
Q ss_pred CCCCCCCCCcCC------hHHHHHHHhh----cCCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChH
Q 013643 244 DKKSDGPRRKLF------TKEEKVLLNK----KLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA 313 (439)
Q Consensus 244 ~~~~~~g~t~L~------~~~~~~lL~~----~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~ 313 (439)
..+ ..|.|||| +.++++.|++ .+.+++..+..|+||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 4 ~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RAD-EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA 82 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccC-CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 455 78999999 6666766665 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHCCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHcCC
Q 013643 314 LHKAIIGKKQAVTNYLLRESA----NPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQARR 388 (439)
Q Consensus 314 L~~Aa~~g~~~iv~~LL~~ga----~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d-~~G~TpLh~A~~~g~ 388 (439)
||+|+..|+.+++++|++.++ +++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+..|+
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence 999999999999999999987 888899999999999999999999999999999999998 889999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 389 ~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
.+++++|+++|+|++.+|..|.||||+|+..|+. +++++|++.+.
T Consensus 163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga 207 (241)
T 1k1a_A 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLL----PLVRTLVRSGA 207 (241)
T ss_dssp HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCH----HHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH----HHHHHHHhcCC
Confidence 9999999999999999999999999999999995 99999998764
No 41
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.7e-33 Score=268.60 Aligned_cols=200 Identities=25% Similarity=0.234 Sum_probs=173.8
Q ss_pred CCCCCCCCcHHHHHHhcCcHHHHHHHHhC----CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHH
Q 013643 210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSG----NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLA 285 (439)
Q Consensus 210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~----ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa 285 (439)
...+..|.|+||.|+..|+.++++.|++. +++++... ...+..|+||||+||
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~------------------------~~~~~~g~tpL~~A~ 62 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE------------------------FKDPETGKTCLLKAM 62 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG------------------------GSCTTTCCCHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc------------------------cccCcCCCCHHHHHH
Confidence 35667899999999999999998888864 44333211 024678999999999
Q ss_pred Hc---CCHHHHHHHHhCCCCC-------cc----cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC----------
Q 013643 286 AS---GEFYFVDALLKHNVDI-------NA----VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE---------- 341 (439)
Q Consensus 286 ~~---g~~eivk~LL~~gadi-------n~----~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~---------- 341 (439)
.. |+.+++++|+++|+++ +. .|..|.||||+|+..|+.++|++|+++|++++.++.
T Consensus 63 ~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~ 142 (273)
T 2pnn_A 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGR 142 (273)
T ss_dssp HSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSS
T ss_pred HHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccc
Confidence 87 9999999999998653 22 566899999999999999999999999999999987
Q ss_pred ----CCCCHHHHHHHcCCHHHHHHHHh---CCCCCccCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCC--
Q 013643 342 ----DGATLLHYAVQTASSPAIKILLL---YNVDINLQDNDGWTPLHLAVQARR---------TDIVKLLLIKGADKT-- 403 (439)
Q Consensus 342 ----~g~TpLh~A~~~g~~~iV~~Ll~---~gadin~~d~~G~TpLh~A~~~g~---------~eiv~~LL~~Gadi~-- 403 (439)
.|.||||+|+..|+.++|++|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|++++
T Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~ 222 (273)
T 2pnn_A 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222 (273)
T ss_dssp CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence 79999999999999999999999 999999999999999999999998 899999999999997
Q ss_pred -----CCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 404 -----LKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 404 -----~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
.+|..|+||||+|+..|+. +++++|++.+.
T Consensus 223 ~~~~~~~d~~g~TpL~~A~~~g~~----~iv~~Ll~~ga 257 (273)
T 2pnn_A 223 LKLEEITNRKGLTPLALAASSGKI----GVLAYILQREI 257 (273)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHT
T ss_pred cccccccCCCCCCHHHHHHHhChH----HHHHHHHHCCC
Confidence 4899999999999999995 99999988654
No 42
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=8.5e-33 Score=262.71 Aligned_cols=195 Identities=26% Similarity=0.252 Sum_probs=172.1
Q ss_pred CCCCcHHHHHHhcCcHHH----HHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHH---H
Q 013643 214 VPPKNPKWAVYGRGLDDV----SEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLA---A 286 (439)
Q Consensus 214 ~~g~t~l~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa---~ 286 (439)
..++++|+.|+..|+.++ +++|++.|++++..+ ...+..|+||||+|+ .
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~------------------------~~~~~~g~t~L~~A~~~~~ 58 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE------------------------FREPSTGKTCLPKALLNLS 58 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG------------------------GSCTTTCCCHHHHHHTSCB
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh------------------------hhccCCCCcHHHHHHHHhh
Confidence 457899999999999995 555555777776543 113467899999999 6
Q ss_pred cCCHHHHHHHHhCCCC-----------CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC--------------C
Q 013643 287 SGEFYFVDALLKHNVD-----------INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD--------------E 341 (439)
Q Consensus 287 ~g~~eivk~LL~~gad-----------in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d--------------~ 341 (439)
.|+.+++++|++.|++ ++..|..|+||||+||..|+.++|++|+++|++++.++ .
T Consensus 59 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 138 (260)
T 3jxi_A 59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFY 138 (260)
T ss_dssp TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCC
T ss_pred cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccccc
Confidence 7999999999998754 34455589999999999999999999999999999998 6
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHh---CCCCCccCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------
Q 013643 342 DGATLLHYAVQTASSPAIKILLL---YNVDINLQDNDGWTPLHLAVQARR---------TDIVKLLLIKGADK------- 402 (439)
Q Consensus 342 ~g~TpLh~A~~~g~~~iV~~Ll~---~gadin~~d~~G~TpLh~A~~~g~---------~eiv~~LL~~Gadi------- 402 (439)
.|.||||+|+..|+.++|++|++ +|++++.+|..|+||||+|+..|+ .+++++|+++|+++
T Consensus 139 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~ 218 (260)
T 3jxi_A 139 FGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218 (260)
T ss_dssp SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchh
Confidence 89999999999999999999999 999999999999999999999888 79999999999999
Q ss_pred CCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643 403 TLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 403 ~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~ 436 (439)
+.+|..|+||||+|+..|+. +++++|++.+
T Consensus 219 ~~~d~~g~tpL~~A~~~g~~----~~v~~Ll~~g 248 (260)
T 3jxi_A 219 ALLNNDGLSPLMMAAKTGKI----GIFQHIIRRE 248 (260)
T ss_dssp GCCCTTSCCHHHHHHHTTCH----HHHHHHHHHH
T ss_pred hcccCCCCCHHHHHHHcCCH----HHHHHHHHhC
Confidence 67999999999999999995 9999998753
No 43
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8e-32 Score=250.22 Aligned_cols=183 Identities=22% Similarity=0.239 Sum_probs=169.7
Q ss_pred CCCcCC------hHHHHHHHhhcCCCccc-CCCCCchHHHHHHHcCCHHHHHHHHhCC--CCCcc-cCCCCChHHHHHHH
Q 013643 250 PRRKLF------TKEEKVLLNKKLPHLAT-ATSKKWLPLHSLAASGEFYFVDALLKHN--VDINA-VDKDGLTALHKAII 319 (439)
Q Consensus 250 g~t~L~------~~~~~~lL~~~~~d~~~-~d~~g~tpLh~Aa~~g~~eivk~LL~~g--adin~-~d~~g~t~L~~Aa~ 319 (439)
|.|||+ ..++++.|++.+.+... .+..|+||||+|+..|+.+++++|+++| ++++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 678888 67788888888877654 8899999999999999999999999999 55655 77899999999999
Q ss_pred cCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 013643 320 GKKQAVTNYLLRES--ANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI 397 (439)
Q Consensus 320 ~g~~~iv~~LL~~g--a~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~ 397 (439)
.|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh-cCC
Q 013643 398 KG-ADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK-QLP 436 (439)
Q Consensus 398 ~G-adi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~-~~~ 436 (439)
+| ++++.+|..|.||||+|+..|+. +++++|+ +.+
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~~g 198 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHG----DAAVLLVEKYG 198 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHC
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCH----HHHHHHHHhcC
Confidence 99 99999999999999999999995 9999998 544
No 44
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.98 E-value=5e-32 Score=246.13 Aligned_cols=163 Identities=27% Similarity=0.292 Sum_probs=157.4
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHH
Q 013643 270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHY 349 (439)
Q Consensus 270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~ 349 (439)
++..|..|+||||+||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHH
Q 013643 350 AVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMI 429 (439)
Q Consensus 350 A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eii 429 (439)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. +++
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~v 183 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ----EVI 183 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH----HHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH----HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 999
Q ss_pred HHHhcCC
Q 013643 430 KLLKQLP 436 (439)
Q Consensus 430 k~L~~~~ 436 (439)
++|++..
T Consensus 184 ~~Ll~~~ 190 (192)
T 2rfm_A 184 KIFTEVR 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998753
No 45
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=2.5e-33 Score=277.17 Aligned_cols=211 Identities=24% Similarity=0.200 Sum_probs=168.3
Q ss_pred cCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCC-------------CCCCCc---CC------hHHHHHH
Q 013643 205 SSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKS-------------DGPRRK---LF------TKEEKVL 262 (439)
Q Consensus 205 ~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~-------------~~g~t~---L~------~~~~~~l 262 (439)
.+......+..|.++++ |+.+++++|++.|++++.... ..+.+. ++ ..++.++
T Consensus 41 ~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 115 (327)
T 1sw6_A 41 SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 115 (327)
T ss_dssp SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHH
T ss_pred CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHH
Confidence 33334445556777765 788999999999988765210 011121 12 5567788
Q ss_pred HhhcCCCccc-CCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC---HHHHHHHHHCC-CCCC
Q 013643 263 LNKKLPHLAT-ATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK---QAVTNYLLRES-ANPF 337 (439)
Q Consensus 263 L~~~~~d~~~-~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~---~~iv~~LL~~g-a~v~ 337 (439)
|...+++++. .+..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+ .++++.|++.+ ++++
T Consensus 116 l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~ 195 (327)
T 1sw6_A 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195 (327)
T ss_dssp CTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence 8889999999 89999999999999999999999999999999999999999999999988 67778888775 6788
Q ss_pred ccCCCCCCHHHHHHH----cCCHHHHHHHHhCCC---------------------------------------------C
Q 013643 338 VVDEDGATLLHYAVQ----TASSPAIKILLLYNV---------------------------------------------D 368 (439)
Q Consensus 338 ~~d~~g~TpLh~A~~----~g~~~iV~~Ll~~ga---------------------------------------------d 368 (439)
.++..|.||||+|+. .|+.+++++|++.++ +
T Consensus 196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~ 275 (327)
T 1sw6_A 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275 (327)
T ss_dssp EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhC
Confidence 899999999999998 899999999987632 5
Q ss_pred CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 013643 369 INLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420 (439)
Q Consensus 369 in~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g 420 (439)
+|.+|..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|+..|
T Consensus 276 ~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 7888889999999999999999999999999999999999999999998765
No 46
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.98 E-value=1.9e-31 Score=237.80 Aligned_cols=159 Identities=31% Similarity=0.419 Sum_probs=152.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT 353 (439)
Q Consensus 274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~ 353 (439)
...+.++|+.||..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433 (439)
Q Consensus 354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~ 433 (439)
|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+. +|+++|+
T Consensus 91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~~~~L~ 166 (169)
T 2y1l_E 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE----DLAEILQ 166 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH----HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999995 9999999
Q ss_pred cCC
Q 013643 434 QLP 436 (439)
Q Consensus 434 ~~~ 436 (439)
+++
T Consensus 167 ~~G 169 (169)
T 2y1l_E 167 KLN 169 (169)
T ss_dssp TC-
T ss_pred HcC
Confidence 864
No 47
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=6.1e-31 Score=244.98 Aligned_cols=204 Identities=19% Similarity=0.142 Sum_probs=185.2
Q ss_pred HHhhcCCCCCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCC
Q 013643 201 DFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATAT 274 (439)
Q Consensus 201 ~~l~~~~~~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d 274 (439)
.++..+......+..|.|||+.|+..|+.+++++|++.|++++......|.|||+ ..+++++|++.+++++..+
T Consensus 27 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 106 (240)
T 3eu9_A 27 ELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID 106 (240)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 3444454555667789999999999999999999999999999777566999999 7889999999999999999
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC-HHHHHHHHHCCCCCCccCC-CCCCHHHHHHH
Q 013643 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKK-QAVTNYLLRESANPFVVDE-DGATLLHYAVQ 352 (439)
Q Consensus 275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~-~~iv~~LL~~ga~v~~~d~-~g~TpLh~A~~ 352 (439)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+.
T Consensus 107 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~ 186 (240)
T 3eu9_A 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186 (240)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999997666 8999999999999999887 89999999999
Q ss_pred cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 013643 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTL 404 (439)
Q Consensus 353 ~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~ 404 (439)
.|+.+++++|+++|++++.++..|+|||++|++.|+.+++++|+++|++...
T Consensus 187 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp HTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 9999999999999999999999999999999999999999999999987654
No 48
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3.8e-31 Score=234.72 Aligned_cols=155 Identities=30% Similarity=0.464 Sum_probs=150.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
.|.||||.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~ 434 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+. +++++|++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~~~~L~~ 156 (167)
T 3v31_A 82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR----SVQQVIES 156 (167)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 77777765
No 49
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=4e-31 Score=255.84 Aligned_cols=212 Identities=22% Similarity=0.256 Sum_probs=184.1
Q ss_pred HHHhcCcHHHHHHHHhCCCCCCCCC--------CCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHHHHHc
Q 013643 222 AVYGRGLDDVSEFFNSGNYDPPDKK--------SDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHSLAAS 287 (439)
Q Consensus 222 ~A~~~g~~eiv~~Ll~~ga~~n~~~--------~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~ 287 (439)
.++..+..+.++.++....++.... ...|.|+|+ +.+++++|++.|++++..+..|+||||+||..
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3455556666666666555544321 023445666 77889999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-C
Q 013643 288 GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY-N 366 (439)
Q Consensus 288 g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~-g 366 (439)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+.. |
T Consensus 84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~ 163 (299)
T 1s70_B 84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877753 5
Q ss_pred CCCc--------------------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 013643 367 VDIN--------------------------LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSG 420 (439)
Q Consensus 367 adin--------------------------~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g 420 (439)
++++ ..+..|.||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~ 243 (299)
T 1s70_B 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred CCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcC
Confidence 5443 35678999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhcCCC
Q 013643 421 RDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 421 ~~~~~~eiik~L~~~~~ 437 (439)
+. +++++|++.+.
T Consensus 244 ~~----~~v~~Ll~~ga 256 (299)
T 1s70_B 244 KE----EACRILVENLC 256 (299)
T ss_dssp CH----HHHHHHHHTTC
T ss_pred CH----HHHHHHHHcCC
Confidence 95 99999998764
No 50
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=4.6e-31 Score=232.50 Aligned_cols=158 Identities=30% Similarity=0.415 Sum_probs=150.8
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
...||||.|+..|+.+++++|+++|++++..+..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 35689999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhc
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD-KTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQ 434 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad-i~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~ 434 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.|||++|+..|+. +++++|++
T Consensus 83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~ 158 (162)
T 1ihb_A 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN----EVVSLMQA 158 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCH----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 699999999999999999995 99999999
Q ss_pred CCCC
Q 013643 435 LPTS 438 (439)
Q Consensus 435 ~~~~ 438 (439)
.+.+
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 8753
No 51
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.3e-32 Score=262.19 Aligned_cols=192 Identities=19% Similarity=0.176 Sum_probs=149.9
Q ss_pred CCCCCCCcHHHHHHhcCcH-HHHHHHHhCCCCCCCCCCCCCCCcCC------hHHHHHHHhhcCCCcccCCCCCchHHHH
Q 013643 211 TQRVPPKNPKWAVYGRGLD-DVSEFFNSGNYDPPDKKSDGPRRKLF------TKEEKVLLNKKLPHLATATSKKWLPLHS 283 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~-eiv~~Ll~~ga~~n~~~~~~g~t~L~------~~~~~~lL~~~~~d~~~~d~~g~tpLh~ 283 (439)
..+..+.|||+.|+..+.. .++++|++.|+++|..+ ..|+|||| +.+++++|+..+++++..+..|.||+|+
T Consensus 47 ~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~ 125 (269)
T 4b93_B 47 AADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS-QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHL 125 (269)
T ss_dssp ----------------------------CCCCTTCCC-TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred ccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccc
Confidence 4456688999988876654 58999999999999999 89999999 6788999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Q 013643 284 LAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILL 363 (439)
Q Consensus 284 Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll 363 (439)
|+..++.+++++|+++|++++.+|..|+||||+||..|+.++|++|+++|++++.++..|.||||+|+..|+.++|++|+
T Consensus 126 a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll 205 (269)
T 4b93_B 126 ACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205 (269)
T ss_dssp HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred ccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCccCCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCC
Q 013643 364 LYNVDINLQDNDGWTPLHLAVQARR-TDIVKLLLIKGADKT 403 (439)
Q Consensus 364 ~~gadin~~d~~G~TpLh~A~~~g~-~eiv~~LL~~Gadi~ 403 (439)
++|+|++.+|..|+||||+|+++++ .+++++|...+++++
T Consensus 206 ~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 206 LHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD 246 (269)
T ss_dssp HTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred HCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence 9999999999999999999998876 456666666665543
No 52
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.1e-30 Score=228.69 Aligned_cols=151 Identities=25% Similarity=0.278 Sum_probs=146.0
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Q 013643 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSP 357 (439)
Q Consensus 278 ~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~ 357 (439)
.++|+.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 81 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence 589999999999999999999999887 5888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643 358 AIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433 (439)
Q Consensus 358 iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~ 433 (439)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. +++++|+
T Consensus 82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~ 153 (153)
T 1awc_B 82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE----DLAEILQ 153 (153)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH----HHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999995 8999874
No 53
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2e-30 Score=241.88 Aligned_cols=162 Identities=24% Similarity=0.247 Sum_probs=153.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC-----CccCCCCCCHHHH
Q 013643 276 KKWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP-----FVVDEDGATLLHY 349 (439)
Q Consensus 276 ~g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v-----~~~d~~g~TpLh~ 349 (439)
.|+||||+||..|+.+++++|++. |++++..|..|+||||+|+..|+.+++++|+++|+++ +.++..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 478999999999999999999998 9999999999999999999999999999999999886 6677899999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCccCCC-------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643 350 AVQTASSPAIKILLLYNVDINLQDN-------------DGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416 (439)
Q Consensus 350 A~~~g~~~iV~~Ll~~gadin~~d~-------------~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A 416 (439)
|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999998866 799999999999999999999999999999999999999999
Q ss_pred HHcCCcchHHHHHHHHhcCCC
Q 013643 417 LYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 417 ~~~g~~~~~~eiik~L~~~~~ 437 (439)
+..|+.+.+.+++++|++.+.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 999998777778899998765
No 54
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=253.84 Aligned_cols=165 Identities=26% Similarity=0.334 Sum_probs=156.9
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhCCC-CCcccCCCCChHHHHHH-----HcCCHHHHHHHHHCCCCCCccCCCC
Q 013643 270 LATATSKKWLPLHSLAASGEFYFVDALLKHNV-DINAVDKDGLTALHKAI-----IGKKQAVTNYLLRESANPFVVDEDG 343 (439)
Q Consensus 270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~ga-din~~d~~g~t~L~~Aa-----~~g~~~iv~~LL~~ga~v~~~d~~g 343 (439)
++..|..|+||||+||..|+.+++++|++.|+ +++..+..|.||||+|+ ..++.+++++|++.|..++..+..|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g 183 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG 183 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence 55677889999999999999999999999998 99999999999999999 6688999999999999999999999
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643 344 ATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLI-KGADKTLKNRDGLTPLDLCLYSGRD 422 (439)
Q Consensus 344 ~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~~g~~ 422 (439)
.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.++|++|++ +|+|++.+|..|.|||++|+..|+.
T Consensus 184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~ 263 (276)
T 4hbd_A 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS 263 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999995
Q ss_pred chHHHHHHHHhcCCCC
Q 013643 423 TRTFGMIKLLKQLPTS 438 (439)
Q Consensus 423 ~~~~eiik~L~~~~~~ 438 (439)
+++++|++...-
T Consensus 264 ----~iv~~Ll~~~~i 275 (276)
T 4hbd_A 264 ----EIASMLYSRMNI 275 (276)
T ss_dssp ----HHHHHHHHHCCC
T ss_pred ----HHHHHHHhccCC
Confidence 999999886543
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.1e-30 Score=232.90 Aligned_cols=138 Identities=25% Similarity=0.294 Sum_probs=77.8
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354 (439)
Q Consensus 275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g 354 (439)
..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 113 (172)
T 3v30_A 34 ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113 (172)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 34555555666666666666666556555555555556666666666666666666555555555555566666666666
Q ss_pred CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 013643 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTP 412 (439)
Q Consensus 355 ~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~Tp 412 (439)
+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus 114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 6666666665566655555556666666666666666666665555555555555544
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.4e-30 Score=230.68 Aligned_cols=155 Identities=30% Similarity=0.421 Sum_probs=147.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 277 KWLPLHSLAASGEFYFVDALLKHNVD-INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 277 g~tpLh~Aa~~g~~eivk~LL~~gad-in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
+.+|||.||..|+.+++++|++.+.+ ++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 35899999999999999999999987 88889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. +++++|+++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~~~~L~~~ 157 (172)
T 3v30_A 82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR----KVQQVIENH 157 (172)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcH----HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 888888764
No 57
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=2.2e-30 Score=229.32 Aligned_cols=160 Identities=32% Similarity=0.375 Sum_probs=149.0
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHh-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643 273 ATSKKWLPLHSLAASGEFYFVDALLK-HNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351 (439)
Q Consensus 273 ~d~~g~tpLh~Aa~~g~~eivk~LL~-~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~ 351 (439)
.+..+.++||.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 35667899999999999999999998 46678888889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHH
Q 013643 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKL 431 (439)
Q Consensus 352 ~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~ 431 (439)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+. |+. +|+++
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~----~i~~~ 158 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDT----DIQDL 158 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCH----HHHHH
T ss_pred HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CCh----HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 774 99999
Q ss_pred HhcCCC
Q 013643 432 LKQLPT 437 (439)
Q Consensus 432 L~~~~~ 437 (439)
|++.+.
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 998763
No 58
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=5.9e-30 Score=225.38 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=147.4
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHH
Q 013643 216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDA 295 (439)
Q Consensus 216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~ 295 (439)
..|+|+.|+..|+.+++++|++.|++++..+ ..|+||||+|+. |+.+++++
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------------------~~g~t~L~~A~~-~~~~~v~~ 55 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQN----------------------------GFGRTALQVMKL-GNPEIARR 55 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC----------------------------TTSCCHHHHCCS-SCHHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccC----------------------------ccCccHHHHHHc-CcHHHHHH
Confidence 4589999999999999999999888776554 467799999999 99999999
Q ss_pred HHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CccCCC
Q 013643 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVD-INLQDN 374 (439)
Q Consensus 296 LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gad-in~~d~ 374 (439)
|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+.
T Consensus 56 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 135 (162)
T 1ihb_A 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135 (162)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 699999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643 375 DGWTPLHLAVQARRTDIVKLLLIKGAD 401 (439)
Q Consensus 375 ~G~TpLh~A~~~g~~eiv~~LL~~Gad 401 (439)
.|+||||+|+..|+.+++++|+++|||
T Consensus 136 ~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 136 KGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999986
No 59
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.2e-30 Score=244.49 Aligned_cols=184 Identities=21% Similarity=0.214 Sum_probs=165.7
Q ss_pred CCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCC
Q 013643 210 CTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGE 289 (439)
Q Consensus 210 ~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~ 289 (439)
...+..|.||||.|+..|+.+++++|++.|++++..+ ..|+||||+|+..|+
T Consensus 39 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~L~~A~~~~~ 90 (236)
T 1ikn_D 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD----------------------------FRGNTPLHLACEQGC 90 (236)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCC----------------------------TTCCCHHHHHHHHTC
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC----------------------------CCCCCHHHHHHHcCC
Confidence 3455679999999999999999999999998877654 457799999999999
Q ss_pred HHHHHHHHhCCCC------CcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHHHHHHH
Q 013643 290 FYFVDALLKHNVD------INAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDE-DGATLLHYAVQTASSPAIKIL 362 (439)
Q Consensus 290 ~eivk~LL~~gad------in~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~-~g~TpLh~A~~~g~~~iV~~L 362 (439)
.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.++|++|
T Consensus 91 ~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 170 (236)
T 1ikn_D 91 LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170 (236)
T ss_dssp HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999976 467788899999999999999999999999999999997 999999999999999999999
Q ss_pred HhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCC
Q 013643 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT--LKNRDGLTPLDLCLYSGR 421 (439)
Q Consensus 363 l~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~--~~d~~G~TpL~~A~~~g~ 421 (439)
+++|++++.+|..|+||||+|+..|+.+++++|+++|++.. ..+..|.||++.+.....
T Consensus 171 l~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~ 231 (236)
T 1ikn_D 171 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE 231 (236)
T ss_dssp HTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-----
T ss_pred HHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccccc
Confidence 99999999999999999999999999999999999999876 788899999877665543
No 60
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.6e-29 Score=225.30 Aligned_cols=160 Identities=26% Similarity=0.366 Sum_probs=149.2
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHH
Q 013643 212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFY 291 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~e 291 (439)
....+.++++.|+..|+.+++++|++.|++++..+ ..|+||||+|+..|+.+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~L~~A~~~~~~~ 61 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAED----------------------------ASGWTPLHLAAFNGHLE 61 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCC----------------------------CCCCCHHHHHHHcCCHH
Confidence 33456789999999999999999999998887654 45779999999999999
Q ss_pred HHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 013643 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINL 371 (439)
Q Consensus 292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~ 371 (439)
++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.
T Consensus 62 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 141 (169)
T 2y1l_E 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643 372 QDNDGWTPLHLAVQARRTDIVKLLLIKG 399 (439)
Q Consensus 372 ~d~~G~TpLh~A~~~g~~eiv~~LL~~G 399 (439)
+|..|+||||+|+..|+.+++++|+++|
T Consensus 142 ~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 142 QDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 9999999999999999999999999876
No 61
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=1.1e-29 Score=222.35 Aligned_cols=153 Identities=32% Similarity=0.443 Sum_probs=147.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 277 KWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 277 g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
+.|+||.||..|+.+++++|++. +.+++..+..|.||||+ |..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 45899999999999999999998 45899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.|||++|+..|+. +++++|+++
T Consensus 81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~----~~v~~Ll~~ 155 (156)
T 1bd8_A 81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQ----DLVDILQGH 155 (156)
T ss_dssp HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCH----HHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 99999999999999999999995 999999874
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=5.1e-30 Score=230.41 Aligned_cols=159 Identities=24% Similarity=0.289 Sum_probs=148.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643 275 SKKWLPLHSLAASGEFYFVDALLKH-NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT 353 (439)
Q Consensus 275 ~~g~tpLh~Aa~~g~~eivk~LL~~-gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~ 353 (439)
..+.++||.||..|+.+++++|++. +.+++..+..|+||||+||..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 3467899999999999999999998 678999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433 (439)
Q Consensus 354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~ 433 (439)
|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++. +++++|+
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~~~~~L~ 158 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE----LLRERAE 158 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH----HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998885 9999999
Q ss_pred cCCC
Q 013643 434 QLPT 437 (439)
Q Consensus 434 ~~~~ 437 (439)
+.+.
T Consensus 159 ~~g~ 162 (179)
T 3f6q_A 159 KMGQ 162 (179)
T ss_dssp HTTC
T ss_pred Hhhc
Confidence 8764
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.3e-29 Score=224.79 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=152.1
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHH
Q 013643 215 PPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVD 294 (439)
Q Consensus 215 ~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk 294 (439)
.|.||||.|+..|+.+++++|++.|++++..+ ..|+||||+|+..|+.++++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~----------------------------~~g~t~L~~A~~~~~~~~v~ 53 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTD----------------------------EEGFTPLMWAAAHGQIAVVE 53 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC----------------------------TTSCCHHHHHHHTTCHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCC----------------------------CCCCCHHHHHHHCCCHHHHH
Confidence 47899999999999999999999887766554 46779999999999999999
Q ss_pred HHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCC
Q 013643 295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN 374 (439)
Q Consensus 295 ~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~ 374 (439)
+|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus 54 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 133 (167)
T 3v31_A 54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133 (167)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643 375 DGWTPLHLAVQARRTDIVKLLLIKGADKT 403 (439)
Q Consensus 375 ~G~TpLh~A~~~g~~eiv~~LL~~Gadi~ 403 (439)
.|+||||+|+..|+.+++++|+++++++.
T Consensus 134 ~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 134 SGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877643
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.2e-29 Score=230.36 Aligned_cols=161 Identities=21% Similarity=0.182 Sum_probs=152.4
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF 290 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~ 290 (439)
..+..|+||||.|+..|+.+++++|++.|++++..+ ..|+||||+|+..|+.
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~----------------------------~~g~t~L~~A~~~~~~ 81 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD----------------------------IEGSTALIWAVKNNRL 81 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC----------------------------TTSCCHHHHHHHTTCH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccccc----------------------------ccCccHHHHHHHcCCH
Confidence 356679999999999999999999999887776554 4578999999999999
Q ss_pred HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Q 013643 291 YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDIN 370 (439)
Q Consensus 291 eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin 370 (439)
+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 82 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 161 (192)
T 2rfm_A 82 GIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161 (192)
T ss_dssp HHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643 371 LQDNDGWTPLHLAVQARRTDIVKLLLIKG 399 (439)
Q Consensus 371 ~~d~~G~TpLh~A~~~g~~eiv~~LL~~G 399 (439)
.+|..|+||||+|+..|+.+++++|+++|
T Consensus 162 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 162 ARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999999999999999999999999875
No 65
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=8.2e-29 Score=225.61 Aligned_cols=163 Identities=20% Similarity=0.147 Sum_probs=152.5
Q ss_pred CCCCCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643 209 TCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG 288 (439)
Q Consensus 209 ~~~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g 288 (439)
....+..|.||||.|+..|+.+++++|++.|++++..+ ..|+||||+|+..|
T Consensus 32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------------------~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN----------------------------SISDSPYLYAGAQG 83 (201)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------------------------TTSCCHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------------------------CCCCCHHHHHHHcC
Confidence 34556789999999999999999999999998887654 45678999999999
Q ss_pred CHHHHHHHH-hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCC-----HHHHHH
Q 013643 289 EFYFVDALL-KHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES-ANPFVVDEDGATLLHYAVQTAS-----SPAIKI 361 (439)
Q Consensus 289 ~~eivk~LL-~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~g-a~v~~~d~~g~TpLh~A~~~g~-----~~iV~~ 361 (439)
+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++ .+++++
T Consensus 84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~ 163 (201)
T 3hra_A 84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163 (201)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence 999999999 667899999999999999999999999999999999 9999999999999999999998 999999
Q ss_pred HHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643 362 LLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399 (439)
Q Consensus 362 Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G 399 (439)
|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999999999999999999999999999999999887
No 66
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=5.1e-30 Score=245.69 Aligned_cols=186 Identities=18% Similarity=0.230 Sum_probs=154.0
Q ss_pred CCCCCCcHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643 212 QRVPPKNPKWAVYGR---GLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG 288 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~---g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g 288 (439)
.+..|+||||+|+.. |+.+++++|++.|++++... .++. ......+..|+||||+|+..|
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~---------------~~i~--~~~~~~d~~g~tpL~~A~~~g 112 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK---------------QFVN--ASYTDSYYKGQTALHIAIERR 112 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH---------------HHHT--CCCCSTTTTTCCHHHHHHHTT
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh---------------HHhh--cccccccCCCCCHHHHHHHcC
Confidence 466899999999986 99999999999997764321 1111 223335678999999999999
Q ss_pred CHHHHHHHHhCCCCCcccCC--------------CCChHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHH
Q 013643 289 EFYFVDALLKHNVDINAVDK--------------DGLTALHKAIIGKKQAVTNYLLR---ESANPFVVDEDGATLLHYAV 351 (439)
Q Consensus 289 ~~eivk~LL~~gadin~~d~--------------~g~t~L~~Aa~~g~~~iv~~LL~---~ga~v~~~d~~g~TpLh~A~ 351 (439)
+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+
T Consensus 113 ~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~ 192 (273)
T 2pnn_A 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192 (273)
T ss_dssp CHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHH
Confidence 99999999999999999987 79999999999999999999999 99999999999999999999
Q ss_pred HcCC---------HHHHHHHHhCCCCCc-------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHH
Q 013643 352 QTAS---------SPAIKILLLYNVDIN-------LQDNDGWTPLHLAVQARRTDIVKLLLIKGA-DKTLKNRDGLTPLD 414 (439)
Q Consensus 352 ~~g~---------~~iV~~Ll~~gadin-------~~d~~G~TpLh~A~~~g~~eiv~~LL~~Ga-di~~~d~~G~TpL~ 414 (439)
..|+ .+++++|+++|++++ .+|..|+||||+|+..|+.++|++|+++|| |+......+.+|-+
T Consensus 193 ~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 9998 899999999999997 489999999999999999999999999999 88888777766643
No 67
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3.5e-29 Score=224.91 Aligned_cols=167 Identities=18% Similarity=0.179 Sum_probs=154.1
Q ss_pred CCCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643 215 PPKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV 293 (439)
Q Consensus 215 ~g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv 293 (439)
.+.++|+.|+..|+.+++++|++. +.+++. .+..|+||||+||..|+.+++
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~----------------------------~~~~g~t~L~~A~~~~~~~~v 55 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQ----------------------------GDDHGFSPLHWACREGRSAVV 55 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTC----------------------------CCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccc----------------------------cCCCCCCHHHHHHHcCcHHHH
Confidence 467899999999999999999987 444443 456788999999999999999
Q ss_pred HHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC
Q 013643 294 DALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD 373 (439)
Q Consensus 294 k~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d 373 (439)
++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 56 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 135 (179)
T 3f6q_A 56 EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135 (179)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 013643 374 NDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409 (439)
Q Consensus 374 ~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G 409 (439)
..|+|||++|+..++.+++++|+++|++++..+..+
T Consensus 136 ~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp TTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 999999999999999999999999999999877554
No 68
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=1.3e-29 Score=240.42 Aligned_cols=175 Identities=21% Similarity=0.209 Sum_probs=157.6
Q ss_pred CCCCCCcHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcC
Q 013643 212 QRVPPKNPKWAVYGR---GLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASG 288 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~---g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g 288 (439)
.+..|+||||+|+.. |+.+++++|++.|++++... . + + .......+..|+||||+|+..|
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~-~-----~---------~--~~~~~~~d~~g~t~L~~A~~~g 101 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPK-P-----L---------V--NAQCTDEFYQGHSALHIAIEKR 101 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSS-C-----G---------G--GCCCCSTTTTTCCHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchh-h-----h---------c--ccccccccccCCCHHHHHHHcC
Confidence 577899999999999 99999999999998887554 0 0 0 0122334567999999999999
Q ss_pred CHHHHHHHHhCCCCCcccCCC-------------CChHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHH
Q 013643 289 EFYFVDALLKHNVDINAVDKD-------------GLTALHKAIIGKKQAVTNYLLR---ESANPFVVDEDGATLLHYAVQ 352 (439)
Q Consensus 289 ~~eivk~LL~~gadin~~d~~-------------g~t~L~~Aa~~g~~~iv~~LL~---~ga~v~~~d~~g~TpLh~A~~ 352 (439)
+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+.
T Consensus 102 ~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181 (256)
T ss_dssp CHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence 999999999999999998876 9999999999999999999999 999999999999999999999
Q ss_pred --cCCHH-------HHHHHHhCCCCC-------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643 353 --TASSP-------AIKILLLYNVDI-------NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT 403 (439)
Q Consensus 353 --~g~~~-------iV~~Ll~~gadi-------n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~ 403 (439)
.++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 182 ~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 78888 999999999999 9999999999999999999999999999987643
No 69
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=1.8e-30 Score=256.59 Aligned_cols=207 Identities=20% Similarity=0.116 Sum_probs=177.8
Q ss_pred CcHHHHHHHHhCCCCCCCCCCCCCCCcCC-hHHHHHHHhhcCCCcccC-----------------CCCCchHHHHHHHcC
Q 013643 227 GLDDVSEFFNSGNYDPPDKKSDGPRRKLF-TKEEKVLLNKKLPHLATA-----------------TSKKWLPLHSLAASG 288 (439)
Q Consensus 227 g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~-~~~~~~lL~~~~~d~~~~-----------------d~~g~tpLh~Aa~~g 288 (439)
...+++++|++.|++++..+ ..|.++++ +.+++++|+++|++++.. .......+|.|+..+
T Consensus 30 ~~~dlv~~ll~~ga~i~~~~-~~g~~~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~ 108 (327)
T 1sw6_A 30 FTHDLTSDFLSSPLKIMKAL-PSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSL 108 (327)
T ss_dssp CCTTCCCSTTTSSCCCEECB-CCCCCCCHHHHHHHHHHHHHHHC-------------------------------CHHHH
T ss_pred hcCchHHHHhhCCcccccCC-CCCCcccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhh
Confidence 34578999999999999999 89999998 889999999999876651 111122357788888
Q ss_pred CHHHHHHHHhCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC---HHHHHHHHh
Q 013643 289 EFYFVDALLKHNVDINA-VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS---SPAIKILLL 364 (439)
Q Consensus 289 ~~eivk~LL~~gadin~-~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~---~~iV~~Ll~ 364 (439)
..+++++|++.|+++|. .|..|+||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+ .++++.|++
T Consensus 109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~ 188 (327)
T 1sw6_A 109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188 (327)
T ss_dssp HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHH
Confidence 88999999999999999 89999999999999999999999999999999999999999999999998 688888888
Q ss_pred CC-CCCccCCCCCCcHHHHHHH----cCCHHHHHHHHHcCC---------------------------------------
Q 013643 365 YN-VDINLQDNDGWTPLHLAVQ----ARRTDIVKLLLIKGA--------------------------------------- 400 (439)
Q Consensus 365 ~g-adin~~d~~G~TpLh~A~~----~g~~eiv~~LL~~Ga--------------------------------------- 400 (439)
.+ ++++.+|..|+||||+|+. .|+.+++++|++.++
T Consensus 189 ~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~ 268 (327)
T 1sw6_A 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268 (327)
T ss_dssp HHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred hhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence 86 7899999999999999999 899999999998743
Q ss_pred ------CCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 401 ------DKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 401 ------di~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
+++.+|..|+||||+|+..|+. +++++|++.+.+
T Consensus 269 ~~Ll~~~~n~~d~~G~TpLh~A~~~g~~----~~v~~Ll~~Gad 308 (327)
T 1sw6_A 269 KWIIANMLNAQDSNGDTCLNIAARLGNI----SIVDALLDYGAD 308 (327)
T ss_dssp HHHHHHTTTCCCTTSCCHHHHHHHHCCH----HHHHHHHHTTCC
T ss_pred HHHHHhCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHHcCCC
Confidence 6888899999999999999995 999999987653
No 70
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=2.9e-30 Score=243.52 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=137.3
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643 214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV 293 (439)
Q Consensus 214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv 293 (439)
..|.|||+.|+..++.++++.|+++|++++.. ..|.||||.|+..|+.+++
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-----------------------------~~~~t~L~~A~~~g~~~~v 53 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-----------------------------PLPLALLLDSSLEGEFDLV 53 (239)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHHHTCHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-----------------------------chhhHHHHHHHHcCCHHHH
Confidence 45889999999999999999999999887632 2467999999999999999
Q ss_pred HHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC
Q 013643 294 DALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD 373 (439)
Q Consensus 294 k~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d 373 (439)
++|+++|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..+
T Consensus 54 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 133 (239)
T 1ycs_B 54 QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133 (239)
T ss_dssp HHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-cHHHHH--HHcCCHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHHHcCC
Q 013643 374 NDGW-TPLHLA--VQARRTDIVKLLLIKGADKTLK---------NRDGLTPLDLCLYSGR 421 (439)
Q Consensus 374 ~~G~-TpLh~A--~~~g~~eiv~~LL~~Gadi~~~---------d~~G~TpL~~A~~~g~ 421 (439)
..|. ||||+| +..|+.+++++|+++|++++.. +..+.+++++|...|.
T Consensus 134 ~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 134 YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp SSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred CCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 8877 999999 7889999999999999998876 5668899998888886
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=3.5e-28 Score=212.79 Aligned_cols=150 Identities=22% Similarity=0.257 Sum_probs=142.9
Q ss_pred CcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHHHH
Q 013643 217 KNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDAL 296 (439)
Q Consensus 217 ~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk~L 296 (439)
.++|+.|+..|+.+++++|++.|++++. +..|+||||+|+..|+.+++++|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------------------~~~g~t~L~~A~~~~~~~~v~~L 53 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFTT-----------------------------DWLGTSPLHLAAQYGHFSTTEVL 53 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCCC-----------------------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCCc-----------------------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence 4789999999999999999999876642 34578999999999999999999
Q ss_pred HhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCC
Q 013643 297 LKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDG 376 (439)
Q Consensus 297 L~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G 376 (439)
+++|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus 54 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 133 (153)
T 1awc_B 54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 133 (153)
T ss_dssp HTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred HHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCCHHHHHHH
Q 013643 377 WTPLHLAVQARRTDIVKLL 395 (439)
Q Consensus 377 ~TpLh~A~~~g~~eiv~~L 395 (439)
+||||+|+..|+.+++++|
T Consensus 134 ~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 134 KTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHh
Confidence 9999999999999999997
No 72
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.1e-29 Score=239.20 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=155.5
Q ss_pred CCCCcHHHHHH---hcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH
Q 013643 214 VPPKNPKWAVY---GRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF 290 (439)
Q Consensus 214 ~~g~t~l~~A~---~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~ 290 (439)
..|+||||.|+ ..|+.+++++|++.|++++... .+ ...+++..+..|+||||+||..|+.
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~--------------~~---~~~~~~~~d~~g~t~L~~A~~~g~~ 106 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR--------------EF---INSPFRDVYYRGQTALHIAIERRCK 106 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH--------------HH---HTCCBCCSSEESBCHHHHHHHTTCH
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH--------------hh---hcccccccccCCCCHHHHHHHcCCH
Confidence 56999999999 7799999999999987765432 11 1244555667899999999999999
Q ss_pred HHHHHHHhCCCCCcccC--------------CCCChHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHc
Q 013643 291 YFVDALLKHNVDINAVD--------------KDGLTALHKAIIGKKQAVTNYLLR---ESANPFVVDEDGATLLHYAVQT 353 (439)
Q Consensus 291 eivk~LL~~gadin~~d--------------~~g~t~L~~Aa~~g~~~iv~~LL~---~ga~v~~~d~~g~TpLh~A~~~ 353 (439)
+++++|+++|++++..+ ..|.||||+|+..|+.++|++|++ +|++++.+|..|.||||+|+..
T Consensus 107 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~ 186 (260)
T 3jxi_A 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186 (260)
T ss_dssp HHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHh
Confidence 99999999999999998 689999999999999999999999 9999999999999999999998
Q ss_pred CC---------HHHHHHHHhCCCCC-------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 013643 354 AS---------SPAIKILLLYNVDI-------NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKT 403 (439)
Q Consensus 354 g~---------~~iV~~Ll~~gadi-------n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~ 403 (439)
|+ .+++++|+++|+++ +.+|..|+||||+|+..|+.++|++|+++|++..
T Consensus 187 ~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 88 79999999999998 7799999999999999999999999999987654
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.1e-28 Score=218.38 Aligned_cols=160 Identities=27% Similarity=0.250 Sum_probs=145.1
Q ss_pred CCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHH
Q 013643 213 RVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYF 292 (439)
Q Consensus 213 ~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~ei 292 (439)
+..+.++|+.|+..|+.+++++|++.+. .+++..+..|+||||+|+..|+.++
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~---------------------------~~~~~~~~~g~t~L~~A~~~~~~~~ 57 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQS---------------------------VNCRDIEGRQSTPLHFAAGYNRVSV 57 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTT---------------------------TTCCCTTTTCCCHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCC---------------------------CCccccccCCCCHHHHHHHcChHHH
Confidence 3456799999999999999999997531 1122345678899999999999999
Q ss_pred HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC
Q 013643 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ 372 (439)
Q Consensus 293 vk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~ 372 (439)
+++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 58 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 137 (165)
T 3twr_A 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK 137 (165)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 013643 373 DNDGWTPLHLAVQARRTDIVKLLLIKGA 400 (439)
Q Consensus 373 d~~G~TpLh~A~~~g~~eiv~~LL~~Ga 400 (439)
|..|+||||+|+. |+.+++++|+++||
T Consensus 138 ~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 138 NRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 9999999999877 99999999999886
No 74
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=5.6e-29 Score=240.12 Aligned_cols=161 Identities=22% Similarity=0.201 Sum_probs=143.1
Q ss_pred CCCCCCCcHHHHHHhcCcHHHHHHHHhCCC-CCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHH----
Q 013643 211 TQRVPPKNPKWAVYGRGLDDVSEFFNSGNY-DPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLA---- 285 (439)
Q Consensus 211 ~~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga-~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa---- 285 (439)
..+..|+||||+|+..|+.+++++|++.|+ +++ ..+..|+||||+|+
T Consensus 106 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~----------------------------~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 106 IADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD----------------------------KQNRAGYSPIMLTALATL 157 (276)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTT----------------------------CCCTTSCCHHHHGGGCCC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCC----------------------------CCCCCCCCHHHHHHHHHh
Confidence 345566777777777777777777776665 444 44567889999999
Q ss_pred -HcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh
Q 013643 286 -ASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLL 364 (439)
Q Consensus 286 -~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~ 364 (439)
..++.+++++|++.|.+++..+..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|++
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence 6689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643 365 -YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399 (439)
Q Consensus 365 -~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G 399 (439)
.|++++.+|..|+||||+|+..|+.+++++|++++
T Consensus 238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 89999999999999999999999999999999874
No 75
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=8.7e-29 Score=217.70 Aligned_cols=147 Identities=20% Similarity=0.177 Sum_probs=121.7
Q ss_pred cccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC-HHH
Q 013643 270 LATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGAT-LLH 348 (439)
Q Consensus 270 ~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~T-pLh 348 (439)
.+..+..|.||||+||..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.++..|.| |||
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 3455778899999999999999999999999999999999999999985 99999999999999999999999999 999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 013643 349 YAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCL 417 (439)
Q Consensus 349 ~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~ 417 (439)
+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||.+.+.
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987543
No 76
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.8e-30 Score=240.59 Aligned_cols=149 Identities=22% Similarity=0.232 Sum_probs=126.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT 353 (439)
Q Consensus 274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~ 353 (439)
+..+.||||+||..|+.+++++|+++|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 34566788888888888889988888888888888888999999888888889888888888888888888999998888
Q ss_pred CCHHHHHHHHhCCCCCccCC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCCC---------------------------
Q 013643 354 ASSPAIKILLLYNVDINLQD-NDGWTPLHLA--VQARRTDIVKLLLIKGADKT--------------------------- 403 (439)
Q Consensus 354 g~~~iV~~Ll~~gadin~~d-~~G~TpLh~A--~~~g~~eiv~~LL~~Gadi~--------------------------- 403 (439)
|+.++|++|+++|++++..+ ..|+||||+| +..|+.+++++|+++|++++
T Consensus 98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga 177 (229)
T 2vge_A 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGE 177 (229)
T ss_dssp TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTC
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccc
Confidence 88888898888888888886 5888999888 88888888888888766543
Q ss_pred -----CCCCCCCCHHHHHHHcCCc
Q 013643 404 -----LKNRDGLTPLDLCLYSGRD 422 (439)
Q Consensus 404 -----~~d~~G~TpL~~A~~~g~~ 422 (439)
.+|..|+||||+|+..|+.
T Consensus 178 ~~~~~~~d~~G~TpL~~A~~~g~~ 201 (229)
T 2vge_A 178 SVTVLRRDGPEETDWWWAALHGQE 201 (229)
T ss_dssp EEEEEESSCTTCSSEEEEEETTEE
T ss_pred cccccccCCCcccHHHHHHHcCCc
Confidence 3566788999999998886
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=1.1e-27 Score=209.64 Aligned_cols=153 Identities=24% Similarity=0.222 Sum_probs=142.8
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHHH
Q 013643 216 PKNPKWAVYGRGLDDVSEFFNSG-NYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVD 294 (439)
Q Consensus 216 g~t~l~~A~~~g~~eiv~~Ll~~-ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eivk 294 (439)
+.|+|+.|+..|+.+++++|++. +.+++. .+..|+||||+ |..|+.++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----------------------------~~~~g~t~L~~-~~~~~~~~v~ 52 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA----------------------------LNRFGKTALQV-MMFGSTAIAL 52 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC----------------------------CCTTSCCHHHH-SCTTCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccc----------------------------cCCCCCcHHHH-HHcCCHHHHH
Confidence 45899999999999999999987 224443 34568899999 9999999999
Q ss_pred HHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCC
Q 013643 295 ALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDN 374 (439)
Q Consensus 295 ~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~ 374 (439)
+|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. ++++.+|.
T Consensus 53 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~ 131 (156)
T 1bd8_A 53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA 131 (156)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred HHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc
Q 013643 375 DGWTPLHLAVQARRTDIVKLLLIK 398 (439)
Q Consensus 375 ~G~TpLh~A~~~g~~eiv~~LL~~ 398 (439)
.|+||||+|+..|+.+++++|+++
T Consensus 132 ~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 132 RGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999974
No 78
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=2.8e-28 Score=209.48 Aligned_cols=134 Identities=22% Similarity=0.255 Sum_probs=118.5
Q ss_pred CCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCC
Q 013643 267 LPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDED-GAT 345 (439)
Q Consensus 267 ~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~-g~T 345 (439)
+++++..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+. |+.+++++|+++|++++.++.. |.|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 46777788888899999999999999999999998888888888999999988 8999999999988888888888 889
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643 346 LLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401 (439)
Q Consensus 346 pLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad 401 (439)
|||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999988999888888899999999998999999999888886
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.8e-28 Score=231.26 Aligned_cols=156 Identities=22% Similarity=0.327 Sum_probs=116.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Q 013643 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTA 354 (439)
Q Consensus 275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g 354 (439)
..|.||||.|+..|+.++++.|+++|++++.. ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 45889999999999999999999999999864 77899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HHcCCcchHHHHHHH
Q 013643 355 SSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGL-TPLDLC--LYSGRDTRTFGMIKL 431 (439)
Q Consensus 355 ~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~-TpL~~A--~~~g~~~~~~eiik~ 431 (439)
+.++|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|+|++.++..|. |||++| +..|+. +++++
T Consensus 82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~----~~~~~ 157 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT----QCSQF 157 (239)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC----CHHHH
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccH----HHHHH
Confidence 99999999999999999999999999999999999999999999999999998877 999999 788887 77888
Q ss_pred HhcC
Q 013643 432 LKQL 435 (439)
Q Consensus 432 L~~~ 435 (439)
|++.
T Consensus 158 Ll~~ 161 (239)
T 1ycs_B 158 LYGV 161 (239)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7763
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=2.7e-27 Score=203.25 Aligned_cols=133 Identities=20% Similarity=0.226 Sum_probs=128.2
Q ss_pred CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCC-CCc
Q 013643 300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDND-GWT 378 (439)
Q Consensus 300 gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~-G~T 378 (439)
+++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++.++.. |+|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 57889999999999999999999999999999999999999999999999999 9999999999999999999999 999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 379 PLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 379 pLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
|||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+. +++++|++.+.
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----~~~~~Ll~~Ga 135 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR----DIARYLHAATG 135 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCH----HHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH----HHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999995 99999988654
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=1.1e-27 Score=218.11 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=137.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVD-KDGLTALHKAIIGKKQ----AVTNYLLRESANPFVVDEDGATLLHYAV 351 (439)
Q Consensus 277 g~tpLh~Aa~~g~~eivk~LL~~gadin~~d-~~g~t~L~~Aa~~g~~----~iv~~LL~~ga~v~~~d~~g~TpLh~A~ 351 (439)
++++|+.||..|+++.++.++..+.+ ..+ ..|+||||+|+..|+. +++++|+++|++++.++..|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 45789999999999999999987754 444 6799999999999975 5999999999999999999999999999
Q ss_pred HcCC------HHHHHHHHhCCCCCccCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHH
Q 013643 352 QTAS------SPAIKILLLYNVDINLQDNDGW-TPLHLAVQAR-----RTDIVKLLLI-KGADKTLKNRDGLTPLDLCLY 418 (439)
Q Consensus 352 ~~g~------~~iV~~Ll~~gadin~~d~~G~-TpLh~A~~~g-----~~eiv~~LL~-~Gadi~~~d~~G~TpL~~A~~ 418 (439)
..|+ .+++++|+++|+++|.+|..|+ ||||+|+..+ +.+++++|++ +|+|++.+|..|.||||+|+.
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~ 163 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence 9987 6889999999999999999999 9999999844 4679999999 999999999999999999999
Q ss_pred cCCcchHHHHHHHHh
Q 013643 419 SGRDTRTFGMIKLLK 433 (439)
Q Consensus 419 ~g~~~~~~eiik~L~ 433 (439)
.|+...+..+.+|++
T Consensus 164 ~~~~~~v~~L~~~~~ 178 (186)
T 3t8k_A 164 CQKPIALKMMEDYIK 178 (186)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 999744444444443
No 82
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=4.2e-26 Score=191.20 Aligned_cols=126 Identities=38% Similarity=0.518 Sum_probs=112.6
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
+|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47789999999999999999999998888888888999999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGAD 401 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gad 401 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999888888899999999999999999999988886
No 83
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=6.2e-26 Score=194.76 Aligned_cols=124 Identities=27% Similarity=0.281 Sum_probs=82.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
.+.||||+||..|+.+++++|+++|++++..|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 92 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 013643 356 SPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG 399 (439)
Q Consensus 356 ~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G 399 (439)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 93 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 66666666666666666666666666666666666666666654
No 84
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.5e-25 Score=192.39 Aligned_cols=126 Identities=28% Similarity=0.372 Sum_probs=120.3
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc
Q 013643 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA 386 (439)
Q Consensus 307 d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~ 386 (439)
...+.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 387 g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~ 436 (439)
|+.+++++|+++|++++.+|..|.|||++|+..|+. +++++|++++
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~----~~~~~Ll~~G 136 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE----DLAEILQKLN 136 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHC-
T ss_pred CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH----HHHHHHHHcC
Confidence 999999999999999999999999999999999995 9999998864
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=6.1e-27 Score=213.22 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=142.3
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCH----H
Q 013643 216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEF----Y 291 (439)
Q Consensus 216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~----e 291 (439)
+.++++.|+..|+.+.++.++..+.+ ..+ +..|+||||+|+..|+. +
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~---------------------------~~~g~T~Lh~A~~~~~~~~~~~ 56 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKE---------------------------SVLKSNILYDVLRNNNDEARYK 56 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHH---------------------------HHHTTTHHHHHTTCSCHHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--ccc---------------------------ccCCCCHHHHHHHcCCcchHHH
Confidence 34678999999999998888876522 111 24588999999999975 5
Q ss_pred HHHHHHhCCCCCcccCCCCChHHHHHHHcCC------HHHHHHHHHCCCCCCccCCCCC-CHHHHHHHcC-----CHHHH
Q 013643 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKK------QAVTNYLLRESANPFVVDEDGA-TLLHYAVQTA-----SSPAI 359 (439)
Q Consensus 292 ivk~LL~~gadin~~d~~g~t~L~~Aa~~g~------~~iv~~LL~~ga~v~~~d~~g~-TpLh~A~~~g-----~~~iV 359 (439)
++++|+++|+++|.++..|+||||+|+..++ .+++++|+++|++++.+|..|. ||||+|+..+ +.+++
T Consensus 57 iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv 136 (186)
T 3t8k_A 57 ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY 136 (186)
T ss_dssp HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH
Confidence 9999999999999999999999999999887 6889999999999999999999 9999999954 45799
Q ss_pred HHHHh-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 013643 360 KILLL-YNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNR 407 (439)
Q Consensus 360 ~~Ll~-~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~ 407 (439)
++|++ +|++++.+|..|+||||+|++.|+.++|++|+++..+.+.++.
T Consensus 137 ~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 137 KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp HHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence 99999 9999999999999999999999999999999988766666553
No 86
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=2.1e-26 Score=197.56 Aligned_cols=131 Identities=31% Similarity=0.365 Sum_probs=85.1
Q ss_pred CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcH
Q 013643 300 NVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTP 379 (439)
Q Consensus 300 gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~Tp 379 (439)
|+|+ .+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4455 456666666666666666666666666666666666667777777777777777777777777777666667777
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 380 LHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 380 Lh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+.. +++++|.+.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~~l~~l~~~ 131 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK----SLLLLPEKN 131 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHH----HHHSCC---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHH----HHHhhcccc
Confidence 7777777777777777777777777777777777766655543 555555543
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=6.5e-25 Score=183.92 Aligned_cols=125 Identities=37% Similarity=0.523 Sum_probs=121.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC
Q 013643 309 DGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARR 388 (439)
Q Consensus 309 ~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~ 388 (439)
+|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 389 TDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 389 ~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
.+++++|+++|++++.+|..|.|||++|+..|+. +++++|++.+.
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~Ga 125 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL----EVVKLLLEAGA 125 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH----HHHHHHHHcCC
Confidence 9999999999999999999999999999999995 99999998765
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.9e-25 Score=195.07 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=120.5
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCc-HHHH
Q 013643 304 NAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWT-PLHL 382 (439)
Q Consensus 304 n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~T-pLh~ 382 (439)
+..+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|+| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 345678999999999999999999999999999999999999999985 99999999999999999999999999 9999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 383 AVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 383 A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+. +++++|++.+.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----~~v~~Ll~~ga~ 136 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR----DVARYLRAAAGG 136 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH----HHHHHHSSCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH----HHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999995 999999987653
No 89
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=9.1e-26 Score=193.61 Aligned_cols=133 Identities=22% Similarity=0.201 Sum_probs=121.7
Q ss_pred CCCcccCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH
Q 013643 267 LPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATL 346 (439)
Q Consensus 267 ~~d~~~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~Tp 346 (439)
|+|+ ..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 4556 678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 013643 347 LHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGA 400 (439)
Q Consensus 347 Lh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Ga 400 (439)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..+++++|.+.+.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999998886654
No 90
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=210.59 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=127.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHhCCCCCcc------cCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHH
Q 013643 277 KWLPLHSLAASGEFYFVDALLKHNVDINA------VDKDGLTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLL 347 (439)
Q Consensus 277 g~tpLh~Aa~~g~~eivk~LL~~gadin~------~d~~g~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpL 347 (439)
..++|+.|+..|+++.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 45789999999999999999999999998 688999999999997 899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCc
Q 013643 348 HYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRD 422 (439)
Q Consensus 348 h~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~ 422 (439)
|+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999987 588999999999984
No 91
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=5.2e-27 Score=236.54 Aligned_cols=204 Identities=13% Similarity=0.038 Sum_probs=118.8
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhCCCCCC---CCCCCCCCCcCC------hHHHHHHHhhcCCCc---ccCCCCCchHHHH
Q 013643 216 PKNPKWAVYGRGLDDVSEFFNSGNYDPP---DKKSDGPRRKLF------TKEEKVLLNKKLPHL---ATATSKKWLPLHS 283 (439)
Q Consensus 216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n---~~~~~~g~t~L~------~~~~~~lL~~~~~d~---~~~d~~g~tpLh~ 283 (439)
+.||||.|+..|+.+++++|++.|+... ..+ ..|.|||+ +.+++++|+++|+++ +..+.. +||||+
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~-~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C-HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 4599999999999999999999987322 122 33445665 556666666666541 111112 566666
Q ss_pred HHHcCCHHHHHHHHhCCCCCcc--cCCCCChHHHHHH-HcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH
Q 013643 284 LAASGEFYFVDALLKHNVDINA--VDKDGLTALHKAI-IGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIK 360 (439)
Q Consensus 284 Aa~~g~~eivk~LL~~gadin~--~d~~g~t~L~~Aa-~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~ 360 (439)
||..|+.++|++|+++|++++. .+..|.||||+|+ ..|+.++|++|+++|+ .|.||||+|+.+|+.++++
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHH
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHH
Confidence 6666666666666666666554 5555666666666 6666666666666543 1556666666666666666
Q ss_pred HHHhCCCCCccCCCCCCcHHHHHHHcC---------------------------CHHHHHHHHHcCC-----CCCCCCCC
Q 013643 361 ILLLYNVDINLQDNDGWTPLHLAVQAR---------------------------RTDIVKLLLIKGA-----DKTLKNRD 408 (439)
Q Consensus 361 ~Ll~~gadin~~d~~G~TpLh~A~~~g---------------------------~~eiv~~LL~~Ga-----di~~~d~~ 408 (439)
+|+++|++++..+. ++++|+..| ..+.+++|++.++ +.......
T Consensus 243 lL~~~ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~ 318 (376)
T 2aja_A 243 FIARHVNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 318 (376)
T ss_dssp HHHHHHHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC
T ss_pred HHHhcCcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCC
Confidence 66666555443321 111121111 2334444443210 01112234
Q ss_pred CCCHHHHHHHcCCcchHHHHHHHHhcCC
Q 013643 409 GLTPLDLCLYSGRDTRTFGMIKLLKQLP 436 (439)
Q Consensus 409 G~TpL~~A~~~g~~~~~~eiik~L~~~~ 436 (439)
+.|||++|+..|+. +++++|++.+
T Consensus 319 ~~~~L~~A~~~g~~----e~v~lLl~~~ 342 (376)
T 2aja_A 319 ANELLRLALRLGNQ----GACALLLSIP 342 (376)
T ss_dssp CCHHHHHHHHHTCT----THHHHHTTSH
T ss_pred ccHHHHHHHHcCcH----HHHHHHHcCh
Confidence 66899999999996 8999998764
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=1.3e-24 Score=196.10 Aligned_cols=140 Identities=25% Similarity=0.275 Sum_probs=130.3
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHH
Q 013643 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQ 352 (439)
Q Consensus 274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~ 352 (439)
+..|+||||+|+..|+.+++++|++ |++++..|..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 3467899999999999999999999 99999999999999999999999999999999999999988 899999999999
Q ss_pred cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHH
Q 013643 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLL 432 (439)
Q Consensus 353 ~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L 432 (439)
.|+.+++++|+++|++++.+|..|+||||+|++.++. ..+.++|++|+..|+. +++++|
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~----~i~~~L 178 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLE----KVINVL 178 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHH----HHHHHH
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHH----HHHHHH
Confidence 9999999999999999999999999999999875422 3578999999999995 999999
Q ss_pred hcC
Q 013643 433 KQL 435 (439)
Q Consensus 433 ~~~ 435 (439)
.+.
T Consensus 179 ~~~ 181 (183)
T 3deo_A 179 EGQ 181 (183)
T ss_dssp HTC
T ss_pred HHh
Confidence 875
No 93
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=5e-25 Score=204.56 Aligned_cols=136 Identities=24% Similarity=0.283 Sum_probs=116.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHH
Q 013643 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE-SANPFVVDEDGATLLHYAVQ 352 (439)
Q Consensus 274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~-ga~v~~~d~~g~TpLh~A~~ 352 (439)
+..|.||||+||..|+.+++++|++.|++++.+|..|+||||+||..|+.++|++|+++ |++++.+|..|.||||+|+.
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 013643 353 TASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDG 409 (439)
Q Consensus 353 ~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G 409 (439)
.|+.++|++|+++|++++.+|..|+||||+|+..|+.++++.|+++|++.+..+..|
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999999999999999999999999999999999999999999999988877654
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=2.4e-24 Score=203.87 Aligned_cols=138 Identities=25% Similarity=0.278 Sum_probs=128.5
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHHHHHHHc
Q 013643 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD-EDGATLLHYAVQT 353 (439)
Q Consensus 275 ~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d-~~g~TpLh~A~~~ 353 (439)
..|.||||+||..|+.+++++|++ |+++|..|..|+||||+||..|+.++|++|+++|++++.++ ..|.||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 457899999999999999999999 99999999999999999999999999999999999999988 7899999999999
Q ss_pred CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHh
Q 013643 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLK 433 (439)
Q Consensus 354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~ 433 (439)
|+.++|++|+++|++++.+|..|+||||+|+..++ ...+.|||++|+..|+. +++++|.
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~----~iv~~L~ 180 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLE----KVINVLE 180 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChH----HHHHHHH
Confidence 99999999999999999999999999999986332 25689999999999996 7888887
Q ss_pred c
Q 013643 434 Q 434 (439)
Q Consensus 434 ~ 434 (439)
+
T Consensus 181 ~ 181 (244)
T 3ui2_A 181 G 181 (244)
T ss_dssp H
T ss_pred H
Confidence 6
No 95
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=201.21 Aligned_cols=139 Identities=25% Similarity=0.378 Sum_probs=121.7
Q ss_pred HHHHHhCCCCCcccC---CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Q 013643 293 VDALLKHNVDINAVD---KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDI 369 (439)
Q Consensus 293 vk~LL~~gadin~~d---~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadi 369 (439)
++.|+++|++++..+ ..+.|+||+||..|+.++|++|++.|++++.+|..|.||||+|+..|+.++|++|+++|+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 467889999877554 45668899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHH--HHcCCcchHHHHHHHHhcC
Q 013643 370 NLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKN-RDGLTPLDLC--LYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 370 n~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d-~~G~TpL~~A--~~~g~~~~~~eiik~L~~~ 435 (439)
+.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|.|||++| +..|+. +++++|++.
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~----~~v~~Ll~~ 145 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA----DCATYLADV 145 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH----HHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH----HHHHHHHHc
Confidence 9999999999999999999999999999999999986 6999999999 888885 899999874
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=1.1e-23 Score=177.31 Aligned_cols=110 Identities=32% Similarity=0.343 Sum_probs=91.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc
Q 013643 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQA 386 (439)
Q Consensus 307 d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~ 386 (439)
+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 34567888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 013643 387 RRTDIVKLLLIKGADKTLKNRDGLTPLDLC 416 (439)
Q Consensus 387 g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A 416 (439)
|+.+++++|+++|++++.+|..|.|||++|
T Consensus 84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 888888888888888888888888888888
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=6.2e-24 Score=178.84 Aligned_cols=117 Identities=21% Similarity=0.169 Sum_probs=108.6
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Q 013643 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQT 353 (439)
Q Consensus 274 d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~ 353 (439)
+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~ 83 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE 83 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHH
Q 013643 354 ASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTD 390 (439)
Q Consensus 354 g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~e 390 (439)
|+.+++++|+++|++++.+|..|+||||+|...+..+
T Consensus 84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 9999999999999999999999999999995443333
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=4.2e-24 Score=198.30 Aligned_cols=128 Identities=24% Similarity=0.272 Sum_probs=116.5
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCccCCCCCCcHHHHHH
Q 013643 306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLY-NVDINLQDNDGWTPLHLAV 384 (439)
Q Consensus 306 ~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~-gadin~~d~~G~TpLh~A~ 384 (439)
.+..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.++|++|++. |++++.+|..|+||||+|+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCC
Q 013643 385 QARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPT 437 (439)
Q Consensus 385 ~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~ 437 (439)
..|+.++|++|+++|++++.+|..|.|||++|+..|+. ++++.|.+...
T Consensus 149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~----~~l~~l~~~~~ 197 (222)
T 3ehr_A 149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA----SLLKKKQGTDA 197 (222)
T ss_dssp HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHH----HHHC-------
T ss_pred HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHH----HHHHHHhccch
Confidence 99999999999999999999999999999999988874 88888877654
No 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=5.5e-25 Score=198.64 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=111.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCC-CCCCcHHHHHHH
Q 013643 307 DKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQD-NDGWTPLHLAVQ 385 (439)
Q Consensus 307 d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d-~~G~TpLh~A~~ 385 (439)
+..|.||||+||..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 4578899999999999999999999 99999999999999999999999999999999999999998 899999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcch
Q 013643 386 ARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTR 424 (439)
Q Consensus 386 ~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~ 424 (439)
.|+.+++++|+++|++++.+|..|.|||++|+..++...
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~ 158 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCC
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcc
Confidence 999999999999999999999999999999999876543
No 100
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=2e-22 Score=194.82 Aligned_cols=190 Identities=19% Similarity=0.234 Sum_probs=145.1
Q ss_pred CCCCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcC-ChHH--HHHHHhhcCC-CcccCCCCCchHHHHHHHc
Q 013643 212 QRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKL-FTKE--EKVLLNKKLP-HLATATSKKWLPLHSLAAS 287 (439)
Q Consensus 212 ~~~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L-~~~~--~~~lL~~~~~-d~~~~d~~g~tpLh~Aa~~ 287 (439)
.+.-+.+.++.+...|+..+.+++...-....... ....... ...+ ..+++..... ..........++|+.|+..
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~k-P~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVK-PNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCS-CCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCC-CCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 44456678899999999888877765432221101 0000111 1111 1112222211 1111222335789999999
Q ss_pred CCHHHHHHHHhCCCCCc------ccCCCCChHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH
Q 013643 288 GEFYFVDALLKHNVDIN------AVDKDGLTALHKAIIG---KKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPA 358 (439)
Q Consensus 288 g~~eivk~LL~~gadin------~~d~~g~t~L~~Aa~~---g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i 358 (439)
|+.+.++.+++.|++++ ..+..|+||||+|+.. |+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~ 220 (278)
T 1dcq_A 141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220 (278)
T ss_dssp TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999954 4478899999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 013643 359 IKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADK 402 (439)
Q Consensus 359 V~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi 402 (439)
|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 221 v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999864
No 101
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=8.3e-23 Score=213.18 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=119.7
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCCccc------CCCCChHHHHHHH---cCCHHHHHHHHHCCCCCCccCCCCCCHHH
Q 013643 278 WLPLHSLAASGEFYFVDALLKHNVDINAV------DKDGLTALHKAII---GKKQAVTNYLLRESANPFVVDEDGATLLH 348 (439)
Q Consensus 278 ~tpLh~Aa~~g~~eivk~LL~~gadin~~------d~~g~t~L~~Aa~---~g~~~iv~~LL~~ga~v~~~d~~g~TpLh 348 (439)
.+.||.|+..|+.++++.|+++|+++|.. +..|.||||+||. .|+.++|++|+++|+++|.+|..|.||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 47899999999999999999999999987 8899999999976 89999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 013643 349 YAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRD 408 (439)
Q Consensus 349 ~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~ 408 (439)
+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|||++.....
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcce
Confidence 999999999999999999999999999999999999999999999999999999875333
No 102
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=6.3e-23 Score=194.10 Aligned_cols=142 Identities=20% Similarity=0.196 Sum_probs=128.2
Q ss_pred CCCCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHcCCHHHH
Q 013643 214 VPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFV 293 (439)
Q Consensus 214 ~~g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~g~~eiv 293 (439)
..|.||||.|+..|+.+++++|++ |++++..+ ..|+||||+||..|+.+++
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d----------------------------~~g~t~L~~A~~~g~~~~v 93 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVD----------------------------ENGRTALLFVAGLGSDKCV 93 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC----------------------------TTSCBHHHHHHHHTCHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC----------------------------CCCCCHHHHHHHCCCHHHH
Confidence 357899999999999999999998 87776554 5678999999999999999
Q ss_pred HHHHhCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC
Q 013643 294 DALLKHNVDINAVD-KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ 372 (439)
Q Consensus 294 k~LL~~gadin~~d-~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~ 372 (439)
++|+++|++++..+ ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus 94 ~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~----------------- 156 (244)
T 3ui2_A 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK----------------- 156 (244)
T ss_dssp HHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------
T ss_pred HHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------
Confidence 99999999999998 789999999999999999999999999999999999999999986322
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 013643 373 DNDGWTPLHLAVQARRTDIVKLLLIKGAD 401 (439)
Q Consensus 373 d~~G~TpLh~A~~~g~~eiv~~LL~~Gad 401 (439)
...+.||||+|+..|+.+++++|++++.+
T Consensus 157 ~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 157 TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 25789999999999999999999986443
No 103
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.88 E-value=7.5e-25 Score=220.77 Aligned_cols=146 Identities=11% Similarity=0.015 Sum_probs=116.5
Q ss_pred chHHHHHHHcCCHHHHHHHHhCCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCCHHHHHH
Q 013643 278 WLPLHSLAASGEFYFVDALLKHNVDI---NAVDKDGLTALHKAIIGKKQAVTNYLLRESANP---FVVDEDGATLLHYAV 351 (439)
Q Consensus 278 ~tpLh~Aa~~g~~eivk~LL~~gadi---n~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v---~~~d~~g~TpLh~A~ 351 (439)
.||||+||..|+.++|++|+++|+.. +..+..|.||||+||..|+.++|++|+++|+++ +..+.+ .||||+|+
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa 171 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA 171 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence 48999999999999999999988732 233445778999999999999999999998752 222223 88999999
Q ss_pred HcCCHHHHHHHHhCCCCCcc--CCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHH
Q 013643 352 QTASSPAIKILLLYNVDINL--QDNDGWTPLHLAV-QARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGM 428 (439)
Q Consensus 352 ~~g~~~iV~~Ll~~gadin~--~d~~G~TpLh~A~-~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~ei 428 (439)
..|+.++|++|+++|++++. .|..|+||||+|+ ..|+.++|++|+++|++ |.|||++|+..|+. ++
T Consensus 172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~----ev 240 (376)
T 2aja_A 172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEK----YV 240 (376)
T ss_dssp HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTT----TH
T ss_pred HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCH----HH
Confidence 99999999999999998877 7888899999999 99999999999987753 78899999999986 78
Q ss_pred HHHHhcC
Q 013643 429 IKLLKQL 435 (439)
Q Consensus 429 ik~L~~~ 435 (439)
+++|++.
T Consensus 241 v~lL~~~ 247 (376)
T 2aja_A 241 NPFIARH 247 (376)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888764
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=1.9e-22 Score=202.61 Aligned_cols=147 Identities=24% Similarity=0.268 Sum_probs=120.7
Q ss_pred CCCchHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643 275 SKKWLPLHSLAAS-GEFYFVDALLKHNVDINAVD--KDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351 (439)
Q Consensus 275 ~~g~tpLh~Aa~~-g~~eivk~LL~~gadin~~d--~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~ 351 (439)
..+.|+||.|+.. |+++++++|+++|+++|..+ ..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT 276 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 3456899999999 99999999999999999988 88999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHcCC
Q 013643 352 QTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKG---ADKTLKNRDGLTPLDLCLYSGR 421 (439)
Q Consensus 352 ~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~G---adi~~~d~~G~TpL~~A~~~g~ 421 (439)
..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++|+.+| ++....+..+.|+++++.....
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~ 349 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL 349 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999876 3444566778899888776654
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=4.5e-21 Score=185.26 Aligned_cols=179 Identities=20% Similarity=0.137 Sum_probs=145.4
Q ss_pred hHHHHHHHhhcCCCccc-----CCCCCchHHHHHHHcCCHHHHHHHHhCCCC-----Cccc-------------------
Q 013643 256 TKEEKVLLNKKLPHLAT-----ATSKKWLPLHSLAASGEFYFVDALLKHNVD-----INAV------------------- 306 (439)
Q Consensus 256 ~~~~~~lL~~~~~d~~~-----~d~~g~tpLh~Aa~~g~~eivk~LL~~gad-----in~~------------------- 306 (439)
+.+...+....|..+.. .|..+.+.++.+...|+..+.+++...-.. ++..
T Consensus 40 c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f 119 (278)
T 1dcq_A 40 CIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY 119 (278)
T ss_dssp CHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 45555555555655543 466777889999999987766655432111 1100
Q ss_pred -------CCCCChHHHHHHHcCCHHHHHHHHHCCCCCC------ccCCCCCCHHHHHHHc---CCHHHHHHHHhCCCCCc
Q 013643 307 -------DKDGLTALHKAIIGKKQAVTNYLLRESANPF------VVDEDGATLLHYAVQT---ASSPAIKILLLYNVDIN 370 (439)
Q Consensus 307 -------d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~------~~d~~g~TpLh~A~~~---g~~~iV~~Ll~~gadin 370 (439)
.....++|+.|+..|+.+.+..+++.|++++ ..+..|.||||+|+.. |+.+++++|+++|+++|
T Consensus 120 ~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in 199 (278)
T 1dcq_A 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 199 (278)
T ss_dssp SCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT
T ss_pred ccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc
Confidence 0012368999999999999999999999954 4478999999999999 89999999999999999
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 371 LQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 371 ~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
.+|..|+||||+|+..|+.++|++|+++|||++.+|..|.||||+|+..|+. +++++|++.+..
T Consensus 200 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE----HCEELLTQALSG 263 (278)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCH----HHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999995 899999886543
No 106
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=197.46 Aligned_cols=146 Identities=20% Similarity=0.110 Sum_probs=125.3
Q ss_pred CCcHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcCChHHHHHHHhhcCCCcccCCCCCchHHHHHHHc---CCHHH
Q 013643 216 PKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAAS---GEFYF 292 (439)
Q Consensus 216 g~t~l~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~g~t~L~~~~~~~lL~~~~~d~~~~d~~g~tpLh~Aa~~---g~~ei 292 (439)
..++|+.|+..|+.++++.|++.|++++... . ....+..|+||||+|+.. |+.++
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~-~---------------------~~~~~~~g~t~Lh~A~~~~~~~~~~i 208 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPL-P---------------------GPDAQAPEELVLHLAVKVANQASLPL 208 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCE-E---------------------CSSSCSCEECHHHHHHHTCCTTTHHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccC-C---------------------CcccCCCCccHHHHHHHhcccCcHHH
Confidence 3467999999999999999999999987642 0 001356789999999997 89999
Q ss_pred HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccC
Q 013643 293 VDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQ 372 (439)
Q Consensus 293 vk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~ 372 (439)
+++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 209 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---- 284 (301)
T 2b0o_E 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---- 284 (301)
T ss_dssp HHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCcHHHHHHHcCCH
Q 013643 373 DNDGWTPLHLAVQARRT 389 (439)
Q Consensus 373 d~~G~TpLh~A~~~g~~ 389 (439)
.|.||||+|+..|+.
T Consensus 285 --~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 --TFAFPLHVDYSWVIS 299 (301)
T ss_dssp --TTSSCCC--------
T ss_pred --CCCChhHHHHhcCCc
Confidence 588999999998864
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.3e-21 Score=156.60 Aligned_cols=92 Identities=38% Similarity=0.512 Sum_probs=69.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH
Q 013643 310 GLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRT 389 (439)
Q Consensus 310 g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~ 389 (439)
|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCC
Q 013643 390 DIVKLLLIKGAD 401 (439)
Q Consensus 390 eiv~~LL~~Gad 401 (439)
+++++|+++||+
T Consensus 82 ~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 82 EVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 777777777764
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=7.2e-22 Score=163.96 Aligned_cols=108 Identities=34% Similarity=0.417 Sum_probs=77.7
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHH
Q 013643 306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ 385 (439)
Q Consensus 306 ~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~ 385 (439)
+|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 013643 386 ARRTDIVKLLLIKGADKTLKNRDGLTPL 413 (439)
Q Consensus 386 ~g~~eiv~~LL~~Gadi~~~d~~G~TpL 413 (439)
.|+.+++++|+++|+|++.++..|.||-
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 7777777777777777777777776663
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=4.7e-21 Score=192.44 Aligned_cols=125 Identities=26% Similarity=0.291 Sum_probs=118.3
Q ss_pred CCCCChHHHHHHHc-CCHHHHHHHHHCCCCCCccC--CCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHH
Q 013643 307 DKDGLTALHKAIIG-KKQAVTNYLLRESANPFVVD--EDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLA 383 (439)
Q Consensus 307 d~~g~t~L~~Aa~~-g~~~iv~~LL~~ga~v~~~d--~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A 383 (439)
...+.|+||.|+.. |+.+++++|+++|++++..+ ..|.||||+|+..|+.++|++|+++|+++|..|..|+||||+|
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 34567899999999 99999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcC
Q 013643 384 VQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 384 ~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~ 435 (439)
+..|+.++|++|+++|+|++.+|..|.||||+|+..|+. +|+++|++.
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~----~iv~lLl~~ 323 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA----DIVTLLRLA 323 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHH
T ss_pred HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCH----HHHHHHHHc
Confidence 999999999999999999999999999999999999996 888888753
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=6.1e-21 Score=199.02 Aligned_cols=124 Identities=24% Similarity=0.225 Sum_probs=117.8
Q ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCcc------CCCCCCHHHHHHH---cCCHHHHHHHHhCCCCCccCCCCCCcHHH
Q 013643 311 LTALHKAIIGKKQAVTNYLLRESANPFVV------DEDGATLLHYAVQ---TASSPAIKILLLYNVDINLQDNDGWTPLH 381 (439)
Q Consensus 311 ~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~------d~~g~TpLh~A~~---~g~~~iV~~Ll~~gadin~~d~~G~TpLh 381 (439)
.+.||.|+..|+.++|+.|+++|++++.. +..|.||||+||. .|+.++|++|+++|+++|.+|..|+||||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh 212 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH 212 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence 47899999999999999999999999977 8899999999977 89999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchHHHHHHHHhcCCCC
Q 013643 382 LAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLYSGRDTRTFGMIKLLKQLPTS 438 (439)
Q Consensus 382 ~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~~g~~~~~~eiik~L~~~~~~ 438 (439)
+|+..|+.++|++|+++|||++.+|..|.||||+|+..|+. +++++|++.+.+
T Consensus 213 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~----~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 213 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK----ECEELLEQAQAG 265 (497)
T ss_dssp HHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCH----HHHHHHHHTCC-
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH----HHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999995 999999987653
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.1e-20 Score=151.09 Aligned_cols=93 Identities=33% Similarity=0.411 Sum_probs=89.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Q 013643 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTAS 355 (439)
Q Consensus 276 ~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~ 355 (439)
+|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 013643 356 SPAIKILLLYNVD 368 (439)
Q Consensus 356 ~~iV~~Ll~~gad 368 (439)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999975
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=4.9e-21 Score=158.89 Aligned_cols=109 Identities=28% Similarity=0.293 Sum_probs=103.2
Q ss_pred cCCCCCchHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Q 013643 272 TATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAV 351 (439)
Q Consensus 272 ~~d~~g~tpLh~Aa~~g~~eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~ 351 (439)
..|..|+||||+||..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhCCCCCccCCCCCCcHH
Q 013643 352 QTASSPAIKILLLYNVDINLQDNDGWTPL 380 (439)
Q Consensus 352 ~~g~~~iV~~Ll~~gadin~~d~~G~TpL 380 (439)
..|+.+++++|+++|+++|.++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=1.9e-18 Score=142.67 Aligned_cols=90 Identities=30% Similarity=0.492 Sum_probs=54.1
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 013643 339 VDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLLIKGADKTLKNRDGLTPLDLCLY 418 (439)
Q Consensus 339 ~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL~~Gadi~~~d~~G~TpL~~A~~ 418 (439)
.+.+|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+.
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 99 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCcchHHHHHHHH
Q 013643 419 SGRDTRTFGMIKLL 432 (439)
Q Consensus 419 ~g~~~~~~eiik~L 432 (439)
.|+. +++++|
T Consensus 100 ~~~~----~~~~~L 109 (110)
T 2zgd_A 100 NGNE----DLAEIL 109 (110)
T ss_dssp HTCH----HHHHHH
T ss_pred cCCH----HHHHHh
Confidence 6663 555554
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=3.9e-18 Score=140.80 Aligned_cols=90 Identities=23% Similarity=0.324 Sum_probs=61.0
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCccCCCCCCcHHHHHHH
Q 013643 306 VDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEDGATLLHYAVQTASSPAIKILLLYNVDINLQDNDGWTPLHLAVQ 385 (439)
Q Consensus 306 ~d~~g~t~L~~Aa~~g~~~iv~~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~iV~~Ll~~gadin~~d~~G~TpLh~A~~ 385 (439)
.+.+|.|+||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 99 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence 45566666666666666666666666666666666667777777777777777777777777777666677777777777
Q ss_pred cCCHHHHHHH
Q 013643 386 ARRTDIVKLL 395 (439)
Q Consensus 386 ~g~~eiv~~L 395 (439)
.|+.+++++|
T Consensus 100 ~~~~~~~~~L 109 (110)
T 2zgd_A 100 NGNEDLAEIL 109 (110)
T ss_dssp HTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 7777776665
No 115
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=98.41 E-value=9e-09 Score=104.01 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL 169 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l 169 (439)
.+|+|+++||+||+|..|.+.+++ |++|||..|.|. ..|++|..+.+ .|+|+++||++ |+|.
T Consensus 326 ~~GiVleg~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sqc~~G~V~~~~Y~~g~~l~~--~GvI~~~dltp-------ekAr 396 (435)
T 2d6f_A 326 YRGIVIEGTGLGHCPDTLIPVIGEAHDMGVPVAMTSQCLNGRVNMNVYSTGRRLLQ--AGVIPCDDMLP-------EVAY 396 (435)
T ss_dssp CSEEEEEEBTTTBCCGGGHHHHHHHHHTTCCEEEEETTCBSCCCTTSSHHHHHHHH--TTCEECTTCCH-------HHHH
T ss_pred CCEEEEecCCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCCccCcccchhhhHHhh--CCEEECCCCCH-------HHHH
Confidence 599999999999999988887766 899999999987 66999999999 99999999999 9999
Q ss_pred hccCCCcccCCC
Q 013643 170 SQLNPPLVLDKP 181 (439)
Q Consensus 170 ~~l~p~~~l~~~ 181 (439)
.+|+ ++|++.
T Consensus 397 ikLm--~~L~~~ 406 (435)
T 2d6f_A 397 VKMC--WVLGQT 406 (435)
T ss_dssp HHHH--HHTTTC
T ss_pred HHHH--HHHhCC
Confidence 9999 999874
No 116
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=98.40 E-value=8.5e-09 Score=102.15 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=60.5
Q ss_pred CCcccccccccCCCch--hHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHh
Q 013643 99 GKQNVVQVEAENLVPD--KWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEA 167 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~--~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~ 167 (439)
.+|+|+++||+||+|. .|.+.+++ |++|||..|.|. ..|++|..+.+ .|+|+++|||+ |+
T Consensus 254 ~~GiVle~~G~Gn~p~~~~~~~~l~~a~~~Gi~VV~~Src~~G~v~~~~Y~~g~~l~~--~GvI~~~dlt~-------ek 324 (358)
T 2him_A 254 VKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSGKVNMGGYATGNALAH--AGVIGGADMTV-------EA 324 (358)
T ss_dssp CSEEEEEEBTTTBCCCCHHHHHHHHHHHHTTCEEEEEESSSBCCCCCC-----CHHHH--TTCEECTTCCH-------HH
T ss_pred CCEEEEecCCCCCCCCcHHHHHHHHHHHHCCCEEEEEcCCCCCCCCccchhhhhHHhh--CCEEECCCCCH-------HH
Confidence 5999999999999994 67776665 899999999987 77999999999 99999999999 99
Q ss_pred hhhccCCCcccCCC
Q 013643 168 KLSQLNPPLVLDKP 181 (439)
Q Consensus 168 ~l~~l~p~~~l~~~ 181 (439)
+..+|+ ++|.+.
T Consensus 325 Ar~kL~--~~L~~~ 336 (358)
T 2him_A 325 TLTKLH--YLLSQE 336 (358)
T ss_dssp HHHHHH--HHHHSS
T ss_pred HHHHHH--HHHhCC
Confidence 999999 999874
No 117
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=98.40 E-value=8.3e-09 Score=104.37 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=66.2
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL 169 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l 169 (439)
.+|+|+++||+||+|..|.+.+++ |++|||..|.|. ..|++|..+.+ .|+|+++||++ |+|.
T Consensus 329 ~~GiVleg~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sqc~~G~V~~~~Y~~g~~l~~--~GvI~~~dltp-------ekAr 399 (438)
T 1zq1_A 329 YKGIVIEGTGLGHTPNDIIPSIERAVEEGVAVCMTSQCIYGRVNLNVYSTGRKLLK--AGVIPCEDMLP-------ETAY 399 (438)
T ss_dssp CSEEEEEEBTTTBCCGGGHHHHHHHHHTTCEEEEEESSSBSCCCCSSSHHHHHHHH--TTCEECTTCCH-------HHHH
T ss_pred CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCccCcccchhhhHHhh--CCEEECCCCCH-------HHHH
Confidence 599999999999999988887776 899999999987 66999999999 99999999999 9999
Q ss_pred hccCCCcccCCC
Q 013643 170 SQLNPPLVLDKP 181 (439)
Q Consensus 170 ~~l~p~~~l~~~ 181 (439)
.+|+ ++|++.
T Consensus 400 ikLm--~~L~~~ 409 (438)
T 1zq1_A 400 VKLM--WVLGHT 409 (438)
T ss_dssp HHHH--HHHTTC
T ss_pred HHHH--HHHhCC
Confidence 9999 999874
No 118
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=98.39 E-value=9.6e-09 Score=100.72 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=66.0
Q ss_pred CCcccccccccCCCc---hhHHHHHHH-------HhHhHHHHHHHH-HHHHhchhhhhhccCccCCCCCChHHHHHHHHh
Q 013643 99 GKQNVVQVEAENLVP---DKWKQVQEE-------LNLTKKEKRQIA-LQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEA 167 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p---~~~~~~~~~-------~~~t~~~~~~v~-~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~ 167 (439)
.+|+|+++||+||+| ..|.+.+++ |++|||..|.|. ..|++|..+.+ .|+|+++|||+ |+
T Consensus 224 ~~GiVle~~G~Gn~p~~~~~~~~~l~~a~~~i~VV~~Sqc~~G~v~~~~Y~~g~~l~~--~Gvi~~~dlt~-------ek 294 (328)
T 1wls_A 224 YKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALE--AGVIPAGDMTK-------EA 294 (328)
T ss_dssp CSEEEEEESSSCCCCCSSSSHHHHHHHHTTTSCEEEEESSSBSCCCTTTBHHHHHHHH--TTCEECTTCCH-------HH
T ss_pred CCEEEEeeeCCCCCCCCcHHHHHHHHHHhcCCeEEEecCCCCCccCCccchhhhHHhh--CCEEECCCCCH-------HH
Confidence 599999999999999 778887766 899999999987 67999999999 99999999999 99
Q ss_pred hhhccCCCcccCCC
Q 013643 168 KLSQLNPPLVLDKP 181 (439)
Q Consensus 168 ~l~~l~p~~~l~~~ 181 (439)
+..+|+ ++|.+.
T Consensus 295 Ar~kL~--~~L~~~ 306 (328)
T 1wls_A 295 TITKLM--WILGHT 306 (328)
T ss_dssp HHHHHH--HHTTTC
T ss_pred HHHHHH--HHHcCC
Confidence 999999 999875
No 119
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=98.28 E-value=2.1e-08 Score=98.53 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=62.6
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHH-HHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKK-EKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL 169 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~-~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l 169 (439)
.+|+|+++||+||+|..|.+.+++ |++||| ..|.|...|+.+ +.+ .|+|+++||++ |++.
T Consensus 246 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sr~~~~G~v~~~y~~~--~~~--~Gvi~~~dlt~-------ekAr 314 (337)
T 4pga_A 246 AKALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQP--DDK--NDWVVAHDLNP-------EKAR 314 (337)
T ss_dssp CSEEEEEEBTTTBCCTTTHHHHHHHHHTTCEEEEEESCCSBCCCCTTTSSC--HHH--HTCEECTTCCH-------HHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEeccCCCCCccCcccccc--ccc--CCEEECCCCCH-------HHHH
Confidence 599999999999999988887777 899999 999988778776 445 89999999999 9999
Q ss_pred hccCCCcccCCC
Q 013643 170 SQLNPPLVLDKP 181 (439)
Q Consensus 170 ~~l~p~~~l~~~ 181 (439)
.+|+ ++|++.
T Consensus 315 ikL~--~~L~~~ 324 (337)
T 4pga_A 315 ILAM--VAMTKT 324 (337)
T ss_dssp HHHH--HHTTTC
T ss_pred HHHH--HHHhCC
Confidence 9999 999875
No 120
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=98.24 E-value=3e-08 Score=97.15 Aligned_cols=70 Identities=10% Similarity=0.019 Sum_probs=62.5
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS 170 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~ 170 (439)
.+|+|+++||+||+|.+|.+.+++ |++|||..|.|... .|..+.+ .|+|+++||++ |++..
T Consensus 236 ~~GiVl~~~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sr~~~G~v~~~--~g~~l~~--~Gvi~~~dlt~-------ekAr~ 304 (326)
T 1nns_A 236 YDGIVSAGVGNGNLYKSVFDTLATAAKTGTAVVRSSRVPTGATTQD--AEVDDAK--YGFVASGTLNP-------QKARV 304 (326)
T ss_dssp CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCBCSS--SSSCHHH--HTEEECBTCCH-------HHHHH
T ss_pred CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCcCCC--hhhHHhc--CCEEECCCCCH-------HHHHH
Confidence 599999999999999988887776 89999999988643 7778888 99999999999 99999
Q ss_pred ccCCCcccCCC
Q 013643 171 QLNPPLVLDKP 181 (439)
Q Consensus 171 ~l~p~~~l~~~ 181 (439)
+|+ ++|.+.
T Consensus 305 kL~--~~L~~~ 313 (326)
T 1nns_A 305 LLQ--LALTQT 313 (326)
T ss_dssp HHH--HHTTTC
T ss_pred HHH--HHHhCC
Confidence 999 999874
No 121
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=98.20 E-value=3.7e-08 Score=96.71 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=62.3
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS 170 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~ 170 (439)
.+|+|+++||+||+|..|.+.+++ |++|||..|.|... .|..+.+ .|+|+++|||+ |++..
T Consensus 240 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sr~~~G~v~~~--~g~~l~~--~Gvi~~~dlt~-------ekAr~ 308 (330)
T 1wsa_A 240 AKGIIHAGMGNGNPFPLTQNALEKAAKSGVVVARSSRVGSGSTTQE--AEVDDKK--LGFVATESLNP-------QKARV 308 (330)
T ss_dssp CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCBCSS--SSSCHHH--HTEEECBSCCH-------HHHHH
T ss_pred CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCcCcc--hhhHHhc--CCEEECCCCCH-------HHHHH
Confidence 599999999999999888887766 89999999988633 7777888 99999999999 99999
Q ss_pred ccCCCcccCCC
Q 013643 171 QLNPPLVLDKP 181 (439)
Q Consensus 171 ~l~p~~~l~~~ 181 (439)
+|+ ++|.+.
T Consensus 309 kL~--~~L~~~ 317 (330)
T 1wsa_A 309 LLM--LALTKT 317 (330)
T ss_dssp HHH--HHHTTC
T ss_pred HHH--HHHhCC
Confidence 999 999874
No 122
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=98.15 E-value=9.9e-08 Score=93.50 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=59.3
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS 170 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~ 170 (439)
.+|+|+++||+||+|.+|.+.+++ |++|||..|.|. .+..+.+ .|+|+++||++ |++..
T Consensus 246 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Src~~G~V~----~~~~l~~--~Gvi~~~dlt~-------ekAri 312 (334)
T 3nxk_A 246 TKGIVVAGSGAGSIHKNQKDVLKELLKKGLKVVVSSRVVAGCVA----VSDSDEK--LGFISAEDLNP-------QKARV 312 (334)
T ss_dssp CCEEEEEEBTTTBCCHHHHHHHHHHHTTTCEEEEEESSSBSCCC----CCHHHHH--HTEEECTTCCH-------HHHHH
T ss_pred CCEEEEeeECCCCCcHHHHHHHHHHHHCCCEEEEeCCCCCCccC----ccccccc--CCEEECCCCCH-------HHHHH
Confidence 599999999999999988887777 899999999882 2344555 99999999999 99999
Q ss_pred ccCCCcccCCC
Q 013643 171 QLNPPLVLDKP 181 (439)
Q Consensus 171 ~l~p~~~l~~~ 181 (439)
+|+ ++|.+.
T Consensus 313 kL~--~~L~~~ 321 (334)
T 3nxk_A 313 LLM--LALTKT 321 (334)
T ss_dssp HHH--HHTTTC
T ss_pred HHH--HHHhCC
Confidence 999 999875
No 123
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=98.10 E-value=1.1e-07 Score=93.45 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=61.4
Q ss_pred CCcccccccccCCCchhHHHHHHH---------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE---------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKL 169 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~---------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l 169 (439)
.+|+|+++||.||+|..|.+.+++ |++|||..|.|... .|..+.+ .|+|+++||++ |++.
T Consensus 240 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~~gi~VV~~Sr~~~G~v~~~--~g~~l~~--~Gvi~~~dlt~-------ekAr 308 (331)
T 1agx_A 240 VKAIIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQGFVLRN--AEQPDDK--YGWIAAHDLNP-------QKAR 308 (331)
T ss_dssp CSEEEEEEBTTTBCCTTHHHHHHHHHHTTCCEEEEEESSCSSCBCTT--TSSCHHH--HTCEECBTCCH-------HHHH
T ss_pred CCEEEEeeECCCCCCHHHHHHHHHHHHcCCCEEEEECCCCCCCcCcc--hhhHHhh--CCEEECCCCCH-------HHHH
Confidence 599999999999999888776554 78999999988633 7778888 99999999999 9999
Q ss_pred hccCCCcccCCC
Q 013643 170 SQLNPPLVLDKP 181 (439)
Q Consensus 170 ~~l~p~~~l~~~ 181 (439)
.+|+ ++|.+.
T Consensus 309 ~kL~--~~L~~~ 318 (331)
T 1agx_A 309 LLMA--LALTKT 318 (331)
T ss_dssp HHHH--HHTTTC
T ss_pred HHHH--HHHhCC
Confidence 9999 999874
No 124
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=98.02 E-value=1.1e-07 Score=93.24 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=59.9
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS 170 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~ 170 (439)
.+|+|+++||.||+|..|.+.+++ |++|||..|.|... |..+.+ .|+|+++||++ |++..
T Consensus 243 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sr~~~G~v~~~---g~~l~~--~Gvi~~~dlt~-------ekAr~ 310 (332)
T 2wlt_A 243 AKGVVIAGVGNGNVSAGFLKAMQEASQMGVVIVRSSRVGSGGVTSG---EIDDKA--YGFITSDNLNP-------QKARV 310 (332)
T ss_dssp CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSSCCCSS---SSCHHH--HTCEECTTCCH-------HHHHH
T ss_pred CCEEEEeeECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCcCcc---hhhhhc--CCEEECCCCCH-------HHHHH
Confidence 599999999999999888887766 89999999988632 336777 99999999999 99999
Q ss_pred ccCCCcccCCC
Q 013643 171 QLNPPLVLDKP 181 (439)
Q Consensus 171 ~l~p~~~l~~~ 181 (439)
+|+ ++|.+.
T Consensus 311 kL~--~~L~~~ 319 (332)
T 2wlt_A 311 LLQ--LALTKT 319 (332)
T ss_dssp HHH--HHHHHC
T ss_pred HHH--HHHhCC
Confidence 999 998874
No 125
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=97.58 E-value=2.1e-06 Score=84.04 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCcccccccccCCCchhHHHHHHH--------HhHhHHHHHHHHHHHHhchhhhhhccCccCCCCCChHHHHHHHHhhhh
Q 013643 99 GKQNVVQVEAENLVPDKWKQVQEE--------LNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDLKEYLAYKEAKLS 170 (439)
Q Consensus 99 ~~~~~~~~~g~~~~p~~~~~~~~~--------~~~t~~~~~~v~~~~~~~~~l~~~~~g~v~~~~mt~~~y~a~~e~~l~ 170 (439)
.+|+|+++||.||+|..|.+.+++ |++|||..|.|... | .+ .| |+++||++ |++..
T Consensus 242 ~~GiVle~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sr~~~G~v~~~---g-~l----~~-i~~~dlt~-------ekAr~ 305 (327)
T 1o7j_A 242 VKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTGNGIVPPD---E-EL----PG-LVSDSLNP-------AHARI 305 (327)
T ss_dssp CSEEEEEEBTTTBCCHHHHHHHHHHHHTTCEEEEEESSSBSCBCCC---T-TS----SS-EECBTCCH-------HHHHH
T ss_pred CCEEEEeeECCCCCCHHHHHHHHHHHHCCceEEEECCCCCCCcCCC---c-cc----cc-ccCCCCCH-------HHHHH
Confidence 599999999999999888887766 89999999988532 3 22 35 99999999 99999
Q ss_pred ccCCCcccCCC
Q 013643 171 QLNPPLVLDKP 181 (439)
Q Consensus 171 ~l~p~~~l~~~ 181 (439)
+|+ ++|.+.
T Consensus 306 kL~--~~L~~~ 314 (327)
T 1o7j_A 306 LLM--LALTRT 314 (327)
T ss_dssp HHH--HHTTTC
T ss_pred HHH--HHHhCC
Confidence 999 999874
No 126
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=60.22 E-value=9.8 Score=38.72 Aligned_cols=147 Identities=10% Similarity=0.059 Sum_probs=84.1
Q ss_pred HHHHHHHcCCHHH----HHHHHhCCCCCcccCCCCChHHHHHHHc-CC-------------HHHHHHHHHCCCCCCccCC
Q 013643 280 PLHSLAASGEFYF----VDALLKHNVDINAVDKDGLTALHKAIIG-KK-------------QAVTNYLLRESANPFVVDE 341 (439)
Q Consensus 280 pLh~Aa~~g~~ei----vk~LL~~gadin~~d~~g~t~L~~Aa~~-g~-------------~~iv~~LL~~ga~v~~~d~ 341 (439)
.|..+++.|+++- ++.+.+.|..++...+ +.|..|+.. +. .++.+.+.+.|..++....
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~ty---n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHY---NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHH---HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3556667777643 3444556777665433 455555432 21 3455666677777654321
Q ss_pred CCCCHHHHHHHcCCHHHHH----HHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCCHH
Q 013643 342 DGATLLHYAVQTASSPAIK----ILLLYNVDINLQDNDGWTPLHLAVQARRTDIVKLL----LIKGADKTLKNRDGLTPL 413 (439)
Q Consensus 342 ~g~TpLh~A~~~g~~~iV~----~Ll~~gadin~~d~~G~TpLh~A~~~g~~eiv~~L----L~~Gadi~~~d~~G~TpL 413 (439)
.+.+...+..|..+-+. .+.+.|..++.... .+.+...++.|..+-+.-+ .+.|..++.... .+-+
T Consensus 109 --n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li 182 (501)
T 4g26_A 109 --TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALL 182 (501)
T ss_dssp --HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHH
T ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHH
Confidence 23455566778765443 33455766554322 2345556677877544444 456777665443 2456
Q ss_pred HHHHHcCCcchHHHHHHHHhcC
Q 013643 414 DLCLYSGRDTRTFGMIKLLKQL 435 (439)
Q Consensus 414 ~~A~~~g~~~~~~eiik~L~~~ 435 (439)
...+..|+.+.+.++++.+.+.
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHh
Confidence 7778888888888888777653
No 127
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=26.06 E-value=81 Score=31.77 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHH
Q 013643 291 YFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTN----YLLRESANPFVVDEDGATLLHYAVQTASSPA----IKIL 362 (439)
Q Consensus 291 eivk~LL~~gadin~~d~~g~t~L~~Aa~~g~~~iv~----~LL~~ga~v~~~d~~g~TpLh~A~~~g~~~i----V~~L 362 (439)
++++.+.+.|..+|.... .+.+...+..|+.+-+. .+.+.|..++... -.+.|...+..|..+- .+.+
T Consensus 91 ~lf~~M~~~G~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATF--TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHTTCCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHH
Confidence 355555666666654433 13444555566654433 2334555544322 1123334455566443 3333
Q ss_pred HhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 013643 363 LLYNVDINLQDNDGWTPLHLAVQARRTDIVKLLL 396 (439)
Q Consensus 363 l~~gadin~~d~~G~TpLh~A~~~g~~eiv~~LL 396 (439)
.+.|..++.... .+-+...++.|+.+-+.-++
T Consensus 167 ~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 167 VESEVVPEEPEL--AALLKVSMDTKNADKVYKTL 198 (501)
T ss_dssp HHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCCCCCHHHH--HHHHHHHhhCCCHHHHHHHH
Confidence 445655544321 12334455666655444443
No 128
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=25.61 E-value=52 Score=20.43 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=15.0
Q ss_pred cccCCCchh-HHHHHHHHhHhH
Q 013643 107 EAENLVPDK-WKQVQEELNLTK 127 (439)
Q Consensus 107 ~g~~~~p~~-~~~~~~~~~~t~ 127 (439)
-|+|-||+. |+...+.||-.|
T Consensus 7 ~gtGYVp~EiWkKaeeavnevk 28 (38)
T 2kyg_C 7 SASGYVPEEIWKKAEEAVNEVK 28 (38)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHH
Confidence 478999987 666666677554
No 129
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=23.98 E-value=1.6e+02 Score=29.05 Aligned_cols=50 Identities=24% Similarity=0.196 Sum_probs=38.1
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCccc--------------CCCCChHHHHHHHcCCHHHHHHHHH
Q 013643 282 HSLAASGEFYFVDALLKHNVDINAV--------------DKDGLTALHKAIIGKKQAVTNYLLR 331 (439)
Q Consensus 282 h~Aa~~g~~eivk~LL~~gadin~~--------------d~~g~t~L~~Aa~~g~~~iv~~LL~ 331 (439)
+..+..|+...|+..+..|-|++.+ -.-|.|.+|+|++..+.+++..|+.
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 3455679999999999888776543 1247888888888888888888876
Done!