BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013644
(439 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 96
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 97 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 153
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 154 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 201
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 202 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 241
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 242 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 292 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 98
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 99 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 155
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 156 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 203
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 204 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 243
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 244 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 294 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 80
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 81 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 137
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 138 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 185
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 186 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 225
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 226 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 276 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 77
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 78 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 134
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 135 RIWDVKTGMCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 182
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 183 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 222
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 223 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 273 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 79
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 80 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 136
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 137 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 184
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 185 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 224
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 225 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 274
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 275 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 74
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 75 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 131
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 132 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 179
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 180 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 219
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 220 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 270 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 74
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 75 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 131
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 132 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 179
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 180 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 219
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 220 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 270 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 80
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 81 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 137
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 138 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 185
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 186 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 225
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 226 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 276 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 146/338 (43%), Gaps = 51/338 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V++V+F+ G++L S S DKL+ W D + + + +SGH I + + +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGI--SDVAWSS 92
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129
D ++++S D +++ + G+ K L H V+ P S I+ S D V+
Sbjct: 93 DSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 149
Query: 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189
+D+++ + S P++++ N R+ + D R++D
Sbjct: 150 IWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTAS 197
Query: 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLG 248
C + LI +N ++ + +S N +L + D + L+
Sbjct: 198 GQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------- 236
Query: 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308
D K + + Y+GH+N + NF ++++SGS+ ++IW + +
Sbjct: 237 ---------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Query: 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
+V+ + G VV HP + A+ +E KT+KLW
Sbjct: 288 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 75
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 76 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 132
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 133 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 180
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 181 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 220
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 221 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 270
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 271 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 146/338 (43%), Gaps = 51/338 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V++V+F+ G++L S S DKL+ W D + + + +SGH I + + +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGI--SDVAWSS 71
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129
D ++++S D +++ + G+ K L H V+ P S I+ S D V+
Sbjct: 72 DSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 128
Query: 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189
+D+++ + S P++++ N R+ + D R++D
Sbjct: 129 IWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTAS 176
Query: 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLG 248
C + LI +N ++ + +S N +L + D + L+
Sbjct: 177 GQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------- 215
Query: 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308
D K + + Y+GH+N + NF ++++SGS+ ++IW + +
Sbjct: 216 ---------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Query: 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
+V+ + G VV HP + A+ +E KT+KLW
Sbjct: 267 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 80
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 81 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 137
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 138 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 185
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 186 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 225
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 226 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 276 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 146/338 (43%), Gaps = 51/338 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V++V+F+ G++L S S DKL+ W D + + + +SGH I + + +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGI--SDVAWSS 74
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129
D ++++S D +++ + G+ K L H V+ P S I+ S D V+
Sbjct: 75 DSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 131
Query: 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189
+D+++ + S P++++ N R+ + D R++D
Sbjct: 132 IWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTAS 179
Query: 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLG 248
C + LI +N ++ + +S N +L + D + L+
Sbjct: 180 GQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------- 218
Query: 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308
D K + + Y+GH+N + NF ++++SGS+ ++IW + +
Sbjct: 219 ---------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Query: 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
+V+ + G VV HP + A+ +E KT+KLW
Sbjct: 270 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 53/339 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 77
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 78 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 134
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 135 RIWDVKTGMCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 182
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 183 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW------ 222
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 223 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
++V+ + G VV HP + A+ +E KT+KLW
Sbjct: 273 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 146/338 (43%), Gaps = 51/338 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V++V+F+ G++L + S DKL+ W D + + + +SGH I + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKT-ISGHKLGI--SDVAWSS 78
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129
D ++++S D +++ + G+ K L H V+ P S I+ S D V+
Sbjct: 79 DSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 135
Query: 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189
+D+++ + S P++++ N R+ + D R++D
Sbjct: 136 IWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTAS 183
Query: 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLG 248
C + LI +N ++ + +S N +L + D + L+
Sbjct: 184 GQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------- 222
Query: 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308
D K + + Y+GH+N + NF ++++SGS+ ++IW + +
Sbjct: 223 ---------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
+V+ + G VV HP + A+ +E KT+KLW
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 146/338 (43%), Gaps = 51/338 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V++V+F+ G++L S S DKL+ W D + + + +SGH I + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGI--SDVAWSS 78
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQ 129
D ++++S D +++ + G+ K L H V+ P S I+ S D V+
Sbjct: 79 DSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVR 135
Query: 130 HFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK 189
+D+++ + S P++++ N R+ + D R++D
Sbjct: 136 IWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTAS 183
Query: 190 CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGLG 248
C + LI +N ++ + +S N +L + D + L+
Sbjct: 184 GQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------- 222
Query: 249 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 308
D K + + Y+GH+N + NF ++++SGS+ ++IW + +
Sbjct: 223 ---------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 309 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKLW 344
+V+ + G VV HP + A+ +E KT+KL+
Sbjct: 274 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 145/338 (42%), Gaps = 53/338 (15%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRR-EKFSYLSGHLDNIFQTRIMPF 68
L GH V++V+F+ G++L S S DKL+ W D + EK +SGH I + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGI--SDVAWS 77
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+D ++++S D +++ + G+ K L H V+ P S I+ S D V
Sbjct: 78 SDSNLLVSASDDKTLKIWDV-SSGKC-LKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESV 134
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR 188
+ +D+++ + S P++++ N R+ + D R++D
Sbjct: 135 RIWDVKTGKCLKTLPAHS------DPVSAVHFN------RDGSLIVSSSYDGLCRIWDTA 182
Query: 189 KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYLFEKNMGL 247
C + LI +N ++ + +S N +L + D + L+
Sbjct: 183 SGQ--------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW------ 222
Query: 248 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 307
D K + + Y+GH+N + NF ++++SGS+ ++IW +
Sbjct: 223 ----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 308 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIE--KTVKL 343
++V+ + G VV HP + A+ +E KT+KL
Sbjct: 273 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 135/340 (39%), Gaps = 59/340 (17%)
Query: 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRI 65
L L GH VN V F G + S SDDK V W+ + L+GH +++
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAF 311
Query: 66 MPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGED 125
P D + I ++S D V+L + + L H V+ +A P I S +D
Sbjct: 312 SP--DGQTIASASDDKTVKL---WNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDD 365
Query: 126 GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY 185
V+ ++ L SS S+R + P + A D+ +++
Sbjct: 366 KTVKLWNRNGQLLQTLTGHSS----------SVR--GVAFSP-DGQTIASASDDKTVKLW 412
Query: 186 DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE-LVYLFEKN 244
+ R + L G ++ + G+A+S + + S +D+ V L+ +N
Sbjct: 413 N-RNGQ--------------LLQTLTGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRN 456
Query: 245 MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
L Q +GH S +V+GV F P+ + + S SD + +W +
Sbjct: 457 GQL-----------------LQTLTGH--SSSVRGV-AFSPDGQTIASASDDKTVKLWNR 496
Query: 305 KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 344
G+L++ + G V + P A+ +KTVKLW
Sbjct: 497 N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 134/341 (39%), Gaps = 67/341 (19%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68
+L H V V F+ G + S SDDK V W+ + L+GH +++ P
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSP- 67
Query: 69 TDDRKIITSSADGQVRL----GQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE 124
D + I ++S D V+L GQ+ + L H V +A P I S +
Sbjct: 68 -DGQTIASASDDKTVKLWNRNGQLLQ-------TLTGHSSSVRGVAFSP-DGQTIASASD 118
Query: 125 DGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV 184
D V+ ++ L SS + + P + A D+ ++
Sbjct: 119 DKTVKLWNRNGQLLQTLTGHSS------------SVWGVAFSP-DGQTIASASDDKTVKL 165
Query: 185 YDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE-LVYLFEK 243
++ R + L G ++ + G+A+S + + S +D+ V L+ +
Sbjct: 166 WN-RNGQ--------------LLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNR 209
Query: 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 303
N L Q +GH S +V+GV F P+ + + S SD + +W
Sbjct: 210 NGQL-----------------LQTLTGH--SSSVRGV-AFSPDGQTIASASDDKTVKLWN 249
Query: 304 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 344
+ G +L++ + G VN + P A+ +KTVKLW
Sbjct: 250 RNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRI 65
L L GH V V F+ G + S SDDK V W+ + L+GH ++ R
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSV---RG 513
Query: 66 MPFTDDRKIITSSADGQV-----RLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIY 120
+ F+ D + I S++D + R GQ+ + L H V+ +A P I
Sbjct: 514 VAFSPDGQTIASASDDKTVKLWNRNGQLLQ-------TLTGHSSSVWGVAFSP-DGQTIA 565
Query: 121 SCGEDGFVQHFD 132
S D V+ ++
Sbjct: 566 SASSDKTVKLWN 577
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 12 GHKGCVNAVEFNSTGDF-LVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H VN + FN +F L +GS DK V WD ++ + K H D IFQ + P +
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 334
Query: 71 --------DRK--IITSSADGQVRLGQIFEDGRMDTKRL-GKHQGRVYKLAVEPGSPYII 119
DR+ + S G+ + + EDG + + G H ++ + P P+II
Sbjct: 335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 394
Query: 120 YSCGEDGFVQHFDL 133
S ED +Q + +
Sbjct: 395 CSVSEDNIMQVWQM 408
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 25/192 (13%)
Query: 9 KLHGHKGCVNAVEFN-STGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP 67
+L GH+ + +N + +L+S SDD + WD ++ + NIF
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA--KNIFTGHTAV 233
Query: 68 FTD------DRKIITSSADGQVRLGQIFEDGRMDTKR----LGKHQGRVYKLAVEPGSPY 117
D + S AD Q + I++ +T + + H V L+ P S +
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLM--IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 118 IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177
I+ + D V +DLR+ SF E+ K + ++ + P N A G
Sbjct: 292 ILATGSADKTVALWDLRN----LKLKLHSF-ESHKDEIFQVQWS-----PHNETILASSG 341
Query: 178 SDEYARVYDIRK 189
+D V+D+ K
Sbjct: 342 TDRRLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 12 GHKGCVNAVEFNSTGDF-LVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H VN + FN +F L +GS DK V WD ++ + K H D IFQ + P +
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 336
Query: 71 --------DRK--IITSSADGQVRLGQIFEDGRMDTKRL-GKHQGRVYKLAVEPGSPYII 119
DR+ + S G+ + + EDG + + G H ++ + P P+II
Sbjct: 337 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 396
Query: 120 YSCGEDGFVQHFDL 133
S ED +Q + +
Sbjct: 397 CSVSEDNIMQVWQM 410
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 25/192 (13%)
Query: 9 KLHGHKGCVNAVEFN-STGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP 67
+L GH+ + +N + +L+S SDD + WD ++ + NIF
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA--KNIFTGHTAV 235
Query: 68 FTD------DRKIITSSADGQVRLGQIFEDGRMDTKR----LGKHQGRVYKLAVEPGSPY 117
D + S AD Q + I++ +T + + H V L+ P S +
Sbjct: 236 VEDVAWHLLHESLFGSVADDQKLM--IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 118 IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177
I+ + D V +DLR+ SF E+ K + ++ + P N A G
Sbjct: 294 ILATGSADKTVALWDLRN----LKLKLHSF-ESHKDEIFQVQWS-----PHNETILASSG 343
Query: 178 SDEYARVYDIRK 189
+D V+D+ K
Sbjct: 344 TDRRLHVWDLSK 355
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 12 GHKGCVNAVEFNSTGDF-LVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H VN + FN +F L +GS DK V WD ++ + K H D IFQ + P +
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 338
Query: 71 --------DRK--IITSSADGQVRLGQIFEDGRMDTKRL-GKHQGRVYKLAVEPGSPYII 119
DR+ + S G+ + + EDG + + G H ++ + P P+II
Sbjct: 339 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWII 398
Query: 120 YSCGEDGFVQHFDL 133
S ED +Q + +
Sbjct: 399 CSVSEDNIMQVWQM 412
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 25/192 (13%)
Query: 9 KLHGHKGCVNAVEFN-STGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP 67
+L GH+ + +N + +L+S SDD + WD ++ + NIF
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA--KNIFTGHTAV 237
Query: 68 FTD------DRKIITSSADGQVRLGQIFEDGRMDTKR----LGKHQGRVYKLAVEPGSPY 117
D + S AD Q + I++ +T + + H V L+ P S +
Sbjct: 238 VEDVAWHLLHESLFGSVADDQKLM--IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 118 IIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG 177
I+ + D V +DLR+ SF E+ K + ++ + P N A G
Sbjct: 296 ILATGSADKTVALWDLRN----LKLKLHSF-ESHKDEIFQVQWS-----PHNETILASSG 345
Query: 178 SDEYARVYDIRK 189
+D V+D+ K
Sbjct: 346 TDRRLHVWDLSK 357
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 12 GHKGCVNAVEFNSTGDF-LVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H VN + FN +F L +GS DK V WD ++ + K H D IFQ P +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 71 --------DRK--IITSSADGQVRLGQIFEDGRMDTKRL-GKHQGRVYKLAVEPGSPYII 119
DR+ + S G+ + + EDG + + G H ++ + P P++I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 120 YSCGEDGFVQ 129
S ED +Q
Sbjct: 393 CSVSEDNIMQ 402
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 19/200 (9%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68
+L GH V+ V ++ G+F VS S D + W+ ++ + ++ +L GH ++ P
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSP- 119
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPG--SPYIIYSCGEDG 126
D+R+I++ D +R+ + + M T G H V + P +P +I S G D
Sbjct: 120 -DNRQIVSGGRDNALRVWNVKGEC-MHTLSRGAHTDWVSCVRFSPSLDAP-VIVSGGWDN 176
Query: 127 FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 186
V+ +DL + RL + K N + ++ + P + + A D AR++D
Sbjct: 177 LVKVWDL---ATGRLV------TDLKGHTNYV--TSVTVSP-DGSLCASSDKDGVARLWD 224
Query: 187 IRKCHWYSPISSDTPVDTFC 206
+ K S +++ P++ C
Sbjct: 225 LTKGEALSEMAAGAPINQIC 244
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Query: 12 GHKGCVNAVEFNSTGDF-LVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H VN + FN +F L +GS DK V WD ++ + K H D IFQ + P +
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 330
Query: 71 --------DRK--IITSSADGQVRLGQIFEDGRMDTKRL-GKHQGRVYKLAVEPGSPYII 119
DR+ + S G+ + + EDG + + G H ++ + P P++I
Sbjct: 331 TILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 390
Query: 120 YSCGEDGFVQHFDL 133
S ED +Q + +
Sbjct: 391 CSVSEDNIMQVWQM 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 12 GHKGCVNAVEFNSTGDF-LVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H VN + FN +F L +GS DK V WD ++ + K H D IFQ P +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 71 --------DRK--IITSSADGQVRLGQIFEDGRMDTKRL-GKHQGRVYKLAVEPGSPYII 119
DR+ + S G+ + + EDG + + G H ++ + P P++I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 120 YSCGEDGFVQ 129
S ED Q
Sbjct: 393 CSVSEDNIXQ 402
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 141/345 (40%), Gaps = 51/345 (14%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH+ V V F+ +VS S+D + WD++ + + L GH D++ + + F
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-LKGHTDSV---QDISFD 159
Query: 70 DDRKIITS-SADGQVRLG--QIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG 126
K++ S SAD ++L Q FE R + H V +++ P +I+ S D
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRT----MHGHDHNVSSVSIMPNGDHIV-SASRDK 214
Query: 127 FVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYD 186
++ +++++ + F +P L A + + + V + A + +
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 187 IR---KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE----LLISYNDELVY 239
R +C ++P SS + + TG + + LL D+ +
Sbjct: 275 HRHVVECISWAPESSYSSIS-------------EATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 240 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHL 299
+++ + G+ L GH N V+GV F ++++S +D L
Sbjct: 322 MWDVSTGMCLMTLV----------------GHDN--WVRGV-LFHSGGKFILSCADDKTL 362
Query: 300 FIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLW 344
+W K + ++ + H V L+ H P T +++TVK+W
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 252 LSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 311
+++ D Q E + GH V V+ PN ++++S S + +W+ + G V+
Sbjct: 172 MTIKLWDFQGFECIRTMHGH--DHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVK 228
Query: 312 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 345
G R V + P+ + A+C ++TV++W
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 264 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQL 323
E SGHR+ T F P ++S S+ + +W + G R + G V +
Sbjct: 100 EKYALSGHRSPVTRV---IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 324 EPHPHIPMFATCGIEKTVKLW 344
+ A+C + T+KLW
Sbjct: 157 SFDHSGKLLASCSADMTIKLW 177
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWD 42
L+ H+ V +++F+ T ++V+GS D+ V W+
Sbjct: 376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 32/292 (10%)
Query: 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIIT 76
+ +V F+ G FL +G++D+L+ WD ++R+ L GH +I+ P D K+++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSGD--KLVS 182
Query: 77 SSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSD 136
S D VR+ + G+ + L G V +AV PG I + D V+ + D
Sbjct: 183 GSGDRTVRIWDL-RTGQC-SLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVW----D 235
Query: 137 SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI 196
S T SEN + + ++V R+ G D ++++++ + S
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLDRSVKLWNLQNANNKS-- 292
Query: 197 SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSP 256
S TP C IG + ++ N +L D V ++K G +PL +
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLM-- 347
Query: 257 EDLQKREEPQVYSGHRNSQTVKGV---NFFGPNDEYVMSGSDCGHLFIWKKK 305
LQ GHRNS V + GP +GS IWK K
Sbjct: 348 --LQ---------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 71/357 (19%), Positives = 132/357 (36%), Gaps = 59/357 (16%)
Query: 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIF----WDWKDRREKFSYLSGHLDNI-------- 60
H V V+F++ G++L +G + ++ R S + +N+
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 61 -FQTRIMPFTDDRKIITSSADGQVRLGQIFE-DGRMDTKRLGKHQGRVYKLAVEPGSPYI 118
R + F+ D K + + A+ RL +I++ + R L H+ +Y L P +
Sbjct: 123 DLYIRSVCFSPDGKFLATGAED--RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 119 IYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS 178
+ G D V+ +DLR+ + + + + P + Y A G
Sbjct: 181 VSGSG-DRTVRIWDLRTGQCSLTLSIED------------GVTTVAVSPGDGKYIAAGSL 227
Query: 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DEL 237
D RV+D + S+ T + + + ++ + ++S + D
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGT--------GHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 238 VYLFE----KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 293
V L+ N +P S + E Y GH++ NDEY++SG
Sbjct: 280 VKLWNLQNANNKSDSKTPNSGTCE--------VTYIGHKDFVLSVATT---QNDEYILSG 328
Query: 294 SDCGHLFIWKKKGGKLVRLMVGDRH------VVNQLEPHPHIPMFATCGIEKTVKLW 344
S + W KK G + ++ G R+ V N P +FAT + ++W
Sbjct: 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRI 65
GHK V +V ++++SGS D+ V+FWD K L GH +++ +
Sbjct: 308 GHKDFVLSVATTQNDEYILSGSKDRGVLFWD-KKSGNPLLMLQGHRNSVISVAV 360
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREK------------FSYLSGHLDN 59
GHK V +V F G +VSGS D+ V W+ ++ K +Y+ GH D
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKD- 311
Query: 60 IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTK--RLGKHQGRVYKLAVEPGSP- 116
F + +D I++ S D G +F D + L H+ V +AV GS
Sbjct: 312 -FVLSVATTQNDEYILSGSKD----RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Query: 117 ---YIIYSCG 123
Y +++ G
Sbjct: 367 GPEYNVFATG 376
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDD 71
GHK V ++F + G L+S S+D ++ W+W+ + +L H + + R++ D
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ--TGDYVFLQAHQETVKDFRLL---QD 1055
Query: 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP-GSPYIIYSCGEDGFVQH 130
++++ S DG V++ + GR++ + HQG V A+ + + S + +
Sbjct: 1056 SRLLSWSFDGTVKVWNVIT-GRIE-RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Query: 131 FDLRS 135
FDL S
Sbjct: 1114 FDLLS 1118
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD 45
+L GH GCV F+ G L +G D+ + W+ D
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 267 VYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325
V++ +S+ V +F ++ ++ +GS+ L +W + M G + VN
Sbjct: 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 751
Query: 326 HPHIPMFATCGIEKTVKLW 344
P + A+C + T++LW
Sbjct: 752 SPDDELLASCSADGTLRLW 770
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDD 71
GHK V ++F + G L+S S+D ++ W+W+ + +L H + + R++ D
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ--TGDYVFLQAHQETVKDFRLL---QD 1062
Query: 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP-GSPYIIYSCGEDGFVQH 130
++++ S DG V++ + GR++ + HQG V A+ + + S + +
Sbjct: 1063 SRLLSWSFDGTVKVWNVIT-GRIE-RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Query: 131 FDLRS 135
FDL S
Sbjct: 1121 FDLLS 1125
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKD 45
+L GH GCV F+ G L +G D+ + W+ D
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 267 VYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 325
V++ +S+ V +F ++ ++ +GS+ L +W + M G + VN
Sbjct: 699 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF 758
Query: 326 HPHIPMFATCGIEKTVKLW 344
P + A+C + T++LW
Sbjct: 759 SPDDELLASCSADGTLRLW 777
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 113/289 (39%), Gaps = 52/289 (17%)
Query: 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY---LSGHLDNIFQTRIMPFTDDRK 73
V + +G+++ G D + ++ K R L+GH + R F DD +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR---FLDDNQ 156
Query: 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133
I+TSS D L I + T H G V L++ P + + S D + +D+
Sbjct: 157 IVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGACDASAKLWDV 213
Query: 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193
R + F + +NAI P N N FA G D R++D+R
Sbjct: 214 REGMCRQTF-----------TGHESDINAICFFP-NGNAFATGSDDATCRLFDLR----- 256
Query: 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS 253
+D + T+ ++I IT +++S + LL++ D+ F N+
Sbjct: 257 ----ADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDD----FNCNV-------- 296
Query: 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 302
D K + V +GH N + GV G V +GS L IW
Sbjct: 297 ---WDALKADRAGVLAGHDNRVSCLGVTDDGM---AVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 113/289 (39%), Gaps = 52/289 (17%)
Query: 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY---LSGHLDNIFQTRIMPFTDDRK 73
V + +G+++ G D + ++ K R L+GH + R F DD +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR---FLDDNQ 156
Query: 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133
I+TSS D L I + T H G V L++ P + + S D + +D+
Sbjct: 157 IVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGACDASAKLWDV 213
Query: 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193
R + F + +NAI P N N FA G D R++D+R
Sbjct: 214 REGMCRQTF-----------TGHESDINAICFFP-NGNAFATGSDDATCRLFDLR----- 256
Query: 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS 253
+D + T+ ++I IT +++S + LL++ D+ F N+
Sbjct: 257 ----ADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDD----FNCNV-------- 296
Query: 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 302
D K + V +GH N + GV G V +GS L IW
Sbjct: 297 ---WDALKADRAGVLAGHDNRVSCLGVTDDGM---AVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 113/289 (39%), Gaps = 52/289 (17%)
Query: 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY---LSGHLDNIFQTRIMPFTDDRK 73
V + +G+++ G D + ++ K R L+GH + R F DD +
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR---FLDDNQ 167
Query: 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133
I+TSS D L I + T H G V L++ P + + S D + +D+
Sbjct: 168 IVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGACDASAKLWDV 224
Query: 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193
R + F + +NAI P N N FA G D R++D+R
Sbjct: 225 REGMCRQTF-----------TGHESDINAICFFP-NGNAFATGSDDATCRLFDLR----- 267
Query: 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS 253
+D + T+ ++I IT +++S + LL++ D+ F N+
Sbjct: 268 ----ADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDD----FNCNV-------- 307
Query: 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 302
D K + V +GH N + GV G V +GS L IW
Sbjct: 308 ---WDALKADRAGVLAGHDNRVSCLGVTDDGM---AVATGSWDSFLKIW 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 113/289 (39%), Gaps = 52/289 (17%)
Query: 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY---LSGHLDNIFQTRIMPFTDDRK 73
V + +G+++ G D + ++ K R L+GH + R F DD +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR---FLDDNQ 156
Query: 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133
I+TSS D L I + T H G V L++ P + + S D + +D+
Sbjct: 157 IVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGACDASAKLWDV 213
Query: 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193
R + F + +NAI P N N FA G D R++D+R
Sbjct: 214 REGMCRQTF-----------TGHESDINAICFFP-NGNAFATGSDDATCRLFDLR----- 256
Query: 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS 253
+D + T+ ++I IT +++S + LL++ D+ F N+
Sbjct: 257 ----ADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDD----FNCNV-------- 296
Query: 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 302
D K + V +GH N + GV G V +GS L IW
Sbjct: 297 ---WDALKADRAGVLAGHDNRVSCLGVTDDGM---AVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 113/289 (39%), Gaps = 52/289 (17%)
Query: 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY---LSGHLDNIFQTRIMPFTDDRK 73
V + +G+++ G D + ++ K R L+GH + R F DD +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCR---FLDDNQ 156
Query: 74 IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDL 133
I+TSS D L I + T H G V L++ P + + S D + +D+
Sbjct: 157 IVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGACDASAKLWDV 213
Query: 134 RSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWY 193
R + F + +NAI P N N FA G D R++D+R
Sbjct: 214 REGMCRQTF-----------TGHESDINAICFFP-NGNAFATGSDDATCRLFDLR----- 256
Query: 194 SPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLS 253
+D + T+ ++I IT +++S + LL++ D+ F N+
Sbjct: 257 ----ADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDD----FNCNV-------- 296
Query: 254 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 302
D K + V +GH N + GV G V +GS L IW
Sbjct: 297 ---WDALKADRAGVLAGHDNRVSCLGVTDDGM---AVATGSWDSFLKIW 339
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 41/214 (19%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY-LSGHLDNIFQTRIMPF 68
L GH+G V ++ F ++SGS DK W + Y L H +++ +++ F
Sbjct: 100 LIGHQGNVCSLSFQD--GVVISGSWDKTAKVW----KEGSLVYNLQAHNASVWDAKVVSF 153
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
+++ K +T+SAD ++L +++ ++ G H V LAV +I SC DG +
Sbjct: 154 SEN-KFLTASADKTIKL---WQNDKVIKTFSGIHNDVVRHLAVVDDGHFI--SCSNDGLI 207
Query: 129 QHFDLRSDSATRLF-------YCSSFSENS---------------------KQPMNSIRL 160
+ D + R + YC N KQ + +
Sbjct: 208 KLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAI 267
Query: 161 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS 194
+ +D + VG SD R++ K W S
Sbjct: 268 SIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRWAS 301
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIM 66
GKL GH G ++ +EFN T L+S SDD + W + + + GH +I
Sbjct: 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSA--- 295
Query: 67 PFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDG 126
+ D K+I+ S DG VRL + Q + L++ G P +DG
Sbjct: 296 SWVGDDKVISCSMDGSVRLWSL-------------KQNTLLALSIVDGVPIFAGRISQDG 342
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFW--DWKDRREKFSYLSGHLDNIFQTRIMP 67
L GH+ V +V + +G+ L + S DK V W D +D E S L+ H ++ P
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 68 FTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGF 127
+ ++S D V+L + ED + L H+ V+ LA +P S + SC +D
Sbjct: 161 --SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRT 217
Query: 128 VQ 129
V+
Sbjct: 218 VR 219
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 36/154 (23%)
Query: 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFW------------------DWKDRR 47
C L GH+ V ++ F+ +G L S SDD+ V W WK
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK--- 242
Query: 48 EKFSYLSG-HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMD--------TKR 98
LSG H I+ T + T+ D +R+ Q ED D T
Sbjct: 243 -CICTLSGFHSRTIYDIAWCQLTG--ALATACGDDAIRVFQ--EDPNSDPQQPTFSLTAH 297
Query: 99 LGK-HQGRVYKLAVEPGSPYIIYSCGEDGFVQHF 131
L + H V +A P P ++ SC +DG V +
Sbjct: 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 25/185 (13%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V+ V +S G F +SGS D + WD ++ GH ++ + +
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLS--VAFSS 115
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY-IIYSCGEDGFV 128
D+R+I++ S D ++L + T + H V + P S II SCG D V
Sbjct: 116 DNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSI----RLNAIVIDPRNPNYFAVGGSDEYARV 184
+ ++L N K N I LN + + P + + A GG D A +
Sbjct: 175 KVWNL---------------ANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAML 218
Query: 185 YDIRK 189
+D+ +
Sbjct: 219 WDLNE 223
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 25/185 (13%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V+ V +S G F +SGS D + WD ++ GH ++ + +
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLS--VAFSS 138
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY-IIYSCGEDGFV 128
D+R+I++ S D ++L + T + H V + P S II SCG D V
Sbjct: 139 DNRQIVSGSRDKTIKLWNTLGVCKY-TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 129 QHFDLRSDSATRLFYCSSFSENSKQPMNSI----RLNAIVIDPRNPNYFAVGGSDEYARV 184
+ ++L N K N I LN + + P + + A GG D A +
Sbjct: 198 KVWNL---------------ANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAML 241
Query: 185 YDIRK 189
+D+ +
Sbjct: 242 WDLNE 246
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V+ + + F +S S DK + WD + + GH ++ P
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKRFVGHQSEVYSVAFSP-- 128
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKL----------AVEPGSPYII 119
D+R+I+++ A+ +++L I + + + H V + V+P +PY
Sbjct: 129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188
Query: 120 YSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD 179
S G DG ++ ++ ++F + +N + I P N Y A GG D
Sbjct: 189 -SVGWDGRLKVWN------------TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKD 234
Query: 180 EYARVYDI 187
+ ++DI
Sbjct: 235 KKLLIWDI 242
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 8 GKLHGHKGCVNAV------EFNSTGDFLVSGSDDKLVIFWDWKDRREKFSY------LSG 55
G L GH V ++ + N L+SGS DK V+ W + + + L+G
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 56 HLDNIFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDT--KRLGKHQGRVYKLAVEP 113
H N F + + ++ I+SS D +RL D R T KR HQ VY +A P
Sbjct: 75 H--NHFVSDLALSQENCFAISSSWDKTLRLW----DLRTGTTYKRFVGHQSEVYSVAFSP 128
Query: 114 GSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIV-----IDPR 168
+ I+ S G + ++ +++ + + S+ EN ++ +R + I+ + P
Sbjct: 129 DNRQIL-SAGAEREIKLWNILGECK----FSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183
Query: 169 NPNYFAVGGSDEYARVYD 186
P YFA G D +V++
Sbjct: 184 AP-YFASVGWDGRLKVWN 200
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP---F 68
GHK V +V+ + ++SGS DK + W K + + L GH D + Q R++P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA 162
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
DD I S+ + ++ +++ +G H + L P +I S G+DG +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGT-LIASAGKDGEI 220
Query: 129 QHFDLRSDSA 138
++L + A
Sbjct: 221 MLWNLAAKKA 230
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP---F 68
GHK V +V+ + ++SGS DK + W K + + L GH D + Q R++P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA 162
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
DD I S+ + ++ +++ +G H + L P +I S G+DG +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGT-LIASAGKDGEI 220
Query: 129 QHFDLRSDSA 138
++L + A
Sbjct: 221 MLWNLAAKKA 230
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP---F 68
GHK V +V+ + ++SGS DK + W K + + L GH D + Q R++P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA 162
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
DD I S+ + ++ +++ +G H + L P +I S G+DG +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGT-LIASAGKDGEI 220
Query: 129 QHFDLRSDSA 138
++L + A
Sbjct: 221 MLWNLAAKKA 230
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP---F 68
GHK V +V+ + ++SGS DK + W K + + L GH D + Q R++P
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA 162
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
DD I S+ + ++ +++ +G H + L P +I S G+DG +
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGT-LIASAGKDGEI 220
Query: 129 QHFDLRSDSA 138
++L + A
Sbjct: 221 MLWNLAAKKA 230
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP---F 68
GHK V +V+ + ++SGS DK + W K + + L GH D + Q R++P
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA 156
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
DD I S+ + ++ +++ +G H + L P +I S G+DG +
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGT-LIASAGKDGEI 214
Query: 129 QHFDLRSDSA 138
++L + A
Sbjct: 215 MLWNLAAKKA 224
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 39/239 (16%)
Query: 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHL-----DN 59
+LC + V V + S LV+ SD V W+ EK S L D+
Sbjct: 85 SLCTAGVQTEAGVTDVAWVSEKGILVA-SDSGAVELWE---ILEKESLLVNKFAKYEHDD 140
Query: 60 IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYII 119
I +T + F+D + ++ D V++ + + + K H V +A PG I
Sbjct: 141 IVKT-LSVFSDGTQAVSGGKDFSVKVWDLSQKAVL--KSYNAHSSEVNCVAACPGKDTIF 197
Query: 120 YSCGEDGFVQHFDLRS-DSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS 178
SCGEDG + +D R ATR+ +C+S ++I ++ P + FA G
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCAS---------DTIP-TSVTWHPEKDDTFACGDE 247
Query: 179 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDE 236
+ +I+ +P S+ T ++ +ITGLAYS ++S L S +++
Sbjct: 248 TGNVSLVNIK-----NPDSAQTS----------AVHSQNITGLAYSYHSSPFLASISED 291
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP---F 68
GHK V +V+ + ++SGS DK + W K + + L GH D + Q R++P
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKA 162
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
DD I S+ + + +++ +G H + L P +I S G+DG +
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIG-HNSNINTLTASPDGT-LIASAGKDGEI 220
Query: 129 QHFDLRSDSA 138
++L + A
Sbjct: 221 XLWNLAAKKA 230
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRI 65
G L GH V V + G+ +VSGS D +I WD + + LSGH D I+ T
Sbjct: 262 FVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY-ILSGHTDRIYST-- 316
Query: 66 MPFTDDRK-IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE 124
+ +RK I++S D +R+ + E+G + + QG + + S + S
Sbjct: 317 -IYDHERKRCISASMDTTIRIWDL-ENGEL----MYTLQGHTALVGLLRLSDKFLVSAAA 370
Query: 125 DGFVQHFD 132
DG ++ +D
Sbjct: 371 DGSIRGWD 378
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68
+L GH G V A+++ + G LVSGS D+ V WD K + GH + I+ +
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEY 214
Query: 69 TDDRKIITSSADGQVRLGQI 88
+ + I+T S D + + ++
Sbjct: 215 KNIKYIVTGSRDNTLHVWKL 234
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRI 65
L L GH V + + FLVS + D + WD D KFSY H N+ + I
Sbjct: 344 LMYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSY---HHTNL--SAI 396
Query: 66 MPFTDDRKIITSSADGQVRL 85
F I+ S ++ Q +
Sbjct: 397 TTFYVSDNILVSGSENQFNI 416
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDR 72
HK V ++F + L+S SDD + W+W + +K +L GH + + R++ +
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNW--QLDKCIFLRGHQETVKDFRLLK---NS 1062
Query: 73 KIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRV 106
++++ S DG V++ I + K HQG V
Sbjct: 1063 RLLSWSFDGTVKVWNIITGNK--EKDFVCHQGTV 1094
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 267 VYSGHRNSQTVKGVNFFGPNDEYVMS--GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLE 324
V++ +S+ V +F + +++ SDC L +W + M G + VN
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC-FLKLWDLNQKECRNTMFGHTNSVNHCR 756
Query: 325 PHPHIPMFATCGIEKTVKLW 344
P + A+C + T+KLW
Sbjct: 757 FSPDDKLLASCSADGTLKLW 776
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWD 42
+L GH GCV F+ L +G D+ + W+
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 6 LCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRI 65
G L GH V V + G+ +VSGS D +I WD + + LSGH D I+ T
Sbjct: 262 FVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLY-ILSGHTDRIYST-- 316
Query: 66 MPFTDDRK-IITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGE 124
+ +RK I++S D +R+ + E+G + QG + + S + S
Sbjct: 317 -IYDHERKRCISASXDTTIRIWDL-ENGELXYTL----QGHTALVGLLRLSDKFLVSAAA 370
Query: 125 DGFVQHFD 132
DG ++ +D
Sbjct: 371 DGSIRGWD 378
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68
+L GH G V A+++ + G LVSGS D+ V WD K + GH + I+ +
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEY 214
Query: 69 TDDRKIITSSADGQVRLGQI 88
+ + I+T S D + + ++
Sbjct: 215 KNIKYIVTGSRDNTLHVWKL 234
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
L GH V + + FLVS + D + WD D KFSY H N+ + I F
Sbjct: 348 LQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSY---HHTNL--SAITTFY 400
Query: 70 DDRKIITSSADGQVRL 85
I+ S ++ Q +
Sbjct: 401 VSDNILVSGSENQFNI 416
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 17 VNAVEFNSTGDFLVSGSDDKLVIFWDWKDR-REKFSYLSGHLDNIFQTRIMPFTDDRKII 75
++AV F T + L S +L I WD++ + E LS D + + + + ++
Sbjct: 194 LHAVTFLRTPEILTVNSIGQLKI-WDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVV 252
Query: 76 -TSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLR 134
T DG + + + G M L H+ ++++ P +P +++C EDG + H+D
Sbjct: 253 ATGGQDGMLSIWDV-RQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Query: 135 SD 136
+D
Sbjct: 312 TD 313
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 14/187 (7%)
Query: 7 CGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIM 66
C L GH G V ++++ +++VS S D +I W+ +K + H + +
Sbjct: 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWN-ALTSQKTHAIKLHCPWVMECAFA 117
Query: 67 PFTDDRKIITSSADGQVRL----GQIFEDGRMDTKR-LGKHQGRVYKLAVEPGSPYIIYS 121
P + + + D + Q DG M R L H+G P + +
Sbjct: 118 P--NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 122 CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY 181
D +D+ + +F S F + S+ +N++ N N F G D
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFG-SEFPSGHTADVLSLSINSL-----NANMFISGSCDTT 229
Query: 182 ARVYDIR 188
R++D+R
Sbjct: 230 VRLWDLR 236
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 12 GHKGCVNAVEFNS-TGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
GH V ++ NS + +SGS D V WD + GH +I + P D
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP--D 260
Query: 71 DRKIITSSADGQVRL 85
++ T S DG RL
Sbjct: 261 GQRFGTGSDDGTCRL 275
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68
KL GH+ + V++N GD L S S D W + E+ L GH I+ + F
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW-YSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 69 TDDRKIITSSADGQVRLGQI 88
T + +T SAD ++L +
Sbjct: 86 T--KYCVTGSADYSIKLWDV 103
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWD---------WKD----RREKFS--- 51
G L GH G + +++ + + V+GS D + WD WK +R +FS
Sbjct: 68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG 127
Query: 52 -YLSGHLDNIFQ 62
Y LDN+ +
Sbjct: 128 NYFLAILDNVMK 139
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 67 PFTD-DRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP---GSPYIIYSC 122
FT+ D +I+T+S DG L + E G++ + H V L + P G+ ++ C
Sbjct: 161 SFTNSDMQILTASGDGTCALWDV-ESGQL-LQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 123 GEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYA 182
+ V +D+RS + F E + +NS+R + + FA G D
Sbjct: 219 DKKAMV--WDMRSGQCVQAF------ETHESDVNSVRYYP------SGDAFASGSDDATC 264
Query: 183 RVYDIR 188
R+YD+R
Sbjct: 265 RLYDLR 270
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 13 HKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT-DD 71
H+ VN+V + +GD SGSDD +D + RE Y + IF + F+
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI--IFGASSVDFSLSG 296
Query: 72 RKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEP 113
R + D + + + + R+ L H+ RV L V P
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSI--LFGHENRVSTLRVSP 336
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 3 RINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKF---SYLSGHLDN 59
++L + GH+ V V +++ G +L + S DK V W+ + E++ S L H +
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 60 IFQTRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVY 107
+ P + + +SS D VR+ + ++D L H+G V+
Sbjct: 156 VKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVW 201
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 16/189 (8%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFW-DWKDRREKFSYLSGHLDNIFQTRIMPF 68
L H V V ++ + L S S D V W D+ D E + L+GH ++ +
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRL-------GKHQGRVYKLAVEPGSPYIIYS 121
++ + S D VR+ + D D + H+ +VY +A G +I S
Sbjct: 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA--WGFNGLIAS 266
Query: 122 CGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEY 181
G DG + ++ D ++F + + +N ++ ++ A GG D
Sbjct: 267 VGADGVLAVYE-EVDGEWKVFAKRALCHGVYE-INVVKW----LELNGKTILATGGDDGI 320
Query: 182 ARVYDIRKC 190
+ + K
Sbjct: 321 VNFWSLEKA 329
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYL---SGHLDNIFQTRIMPF 68
GH V +V F+ +VS S D+ + W+ K++ GH D + R P
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPN 528
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFV 128
T I+++S D V++ + T L H G V +AV P + S G+DG V
Sbjct: 529 TLQPTIVSASWDKTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGS-LCASGGKDGVV 585
Query: 129 QHFDL 133
+DL
Sbjct: 586 LLWDL 590
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/201 (18%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68
+L GH V V +S G F +SGS D + WD ++ GH ++
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFS-- 481
Query: 69 TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGK-HQGRVYKLAVEPGS--PYIIYSCGED 125
D+R+I+++S D ++L + + G+ H+ V + P + P I+ +
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-- 539
Query: 126 GFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVY 185
D +++ S+ S ++ ++ + + P + + A GG D ++
Sbjct: 540 ----------DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLW 588
Query: 186 DIRKCHWYSPISSDTPVDTFC 206
D+ + + +++ + C
Sbjct: 589 DLAEGKKLYSLEANSVIHALC 609
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 1 MKRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNI 60
+ L L GH G V+ V + G SG D +V+ WD + ++ +S + +
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV--- 604
Query: 61 FQTRIMPFTDDRKIITSSADGQVRLG-----QIFEDGRMDTK 97
+ F+ +R + ++ + +++ I ED ++D K
Sbjct: 605 --IHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLK 644
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 4 INLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNI--F 61
I L L GH+ VN V+F+ ++VS S D+ + W+ E L+GH I
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWN-TSTCEFVRTLNGHKRGIACL 302
Query: 62 QTRIMPFTDDRKIITSSADGQVRLGQI 88
Q R DR +++ S+D +RL I
Sbjct: 303 QYR------DRLVVSGSSDNTIRLWDI 323
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 107/274 (39%), Gaps = 58/274 (21%)
Query: 29 LVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTDDRKIITSSADGQVRLGQI 88
+VSG D + WD K+ E L+GH ++ + D+R IIT S+D VR+ +
Sbjct: 146 IVSGLRDNTIKIWD-KNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200
Query: 89 FEDGRMDTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFS 148
++T L H V L G ++ +C +D + +D+ S + L
Sbjct: 201 NTGEMLNT--LIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITL------- 248
Query: 149 ENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 208
++ + R V+D + Y D +V++ C + +
Sbjct: 249 ---RRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTL------------ 292
Query: 209 HLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY 268
N H G+A + Y D LV G S ++ D++ +V
Sbjct: 293 ------NGHKRGIA-------CLQYRDRLVV-------SGSSDNTIRLWDIECGACLRVL 332
Query: 269 SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 302
GH + V+ + F +++ ++SG+ G + +W
Sbjct: 333 EGH--EELVRCIRF---DNKRIVSGAYDGKIKVW 361
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 218 ITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 277
+ L + + L + +N+ ++ K+ + ++ SP D+ R +V GHR
Sbjct: 206 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA-SPTDITLR---RVLVGHR----- 256
Query: 278 KGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI 337
VN +D+Y++S S + +W + VR + G + + L+ + + +
Sbjct: 257 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS-- 314
Query: 338 EKTVKLW 344
+ T++LW
Sbjct: 315 DNTIRLW 321
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 271 HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 330
H S+T KGV +D+ ++SG + IW K + R++ G V L+ +
Sbjct: 127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV- 185
Query: 331 MFATCGIEKTVKLW 344
T + TV++W
Sbjct: 186 -IITGSSDSTVRVW 198
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 29 LVSGSDDKLVIFWDWKDRREKFSY-LSGHLDNIFQTRI---MPFTDDRKIITSSADGQVR 84
+V+GS D LV W W+D R + L GH + I +P +SS D +R
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA-----ASSSLDAHIR 105
Query: 85 LGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPYI 118
L + E+G+ K + + LA P S Y+
Sbjct: 106 LWDL-ENGKQ-IKSIDAGPVDAWTLAFSPDSQYL 137
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 2 KRINLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIF 61
+R++L L GH+ V +V+ + T S S D + WD ++ ++ S +G +D
Sbjct: 68 ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD--- 124
Query: 62 QTRIMPFT-DDRKIITSSADGQVRLGQIFEDGR----MDTKRLGKHQGRVYKLAVEPGSP 116
+ F+ D + + T + G+V + + E G+ +DT+ GK + +A P
Sbjct: 125 -AWTLAFSPDSQYLATGTHVGKVNIFGV-ESGKKEYSLDTR--GKF---ILSIAYSPDGK 177
Query: 117 YIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG 176
Y+ S DG + FD+ + E P+ S+ + +
Sbjct: 178 YLA-SGAIDGIINIFDIATGKLLHTL------EGHAMPIRSLTFSP------DSQLLVTA 224
Query: 177 GSDEYARVYDIRKCHWYSPISSDTPV---DTFCP 207
D Y ++YD++ + +S FCP
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 8 GKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMP 67
G L GH V + + S G L SG +D +V WD + KF+ + H + P
Sbjct: 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-TNHNAAVKAVAWCP 269
Query: 68 F----------TDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVYKLAVEPGSPY 117
+ T D++I +A R+ + ++ + H + P +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 118 IIYSCGEDGFVQHFDLRSDSATRLFYCS 145
I+S G + D+ + TR+ Y +
Sbjct: 330 SIWSYSSSGLTKQVDIPAHD-TRVLYSA 356
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 13 HKGCVNAVEFNSTGDFLVSGSD-DKLVIFWDWKDRREKFSYLSG--HLDNIFQTRIMPFT 69
HK V EFN D+L++ S D V WD ++ ++K SY++ H + P T
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP-T 260
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQ 103
D K++T+ ++R+ ++ + D + H+
Sbjct: 261 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 294
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 13 HKGCVNAVEFNSTGDFLVSGSD-DKLVIFWDWKDRREKFSYLSG--HLDNIFQTRIMPFT 69
HK V EFN D+L++ S D V WD ++ ++K SY++ H + P T
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP-T 261
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQ 103
D K++T+ ++R+ ++ + D + H+
Sbjct: 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
H + ++ + T +++SGSDD V W+W++ GH + P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-K 151
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVY-KLAVEPGSPYIIYSCGEDGFV 128
D + D V++ + + T G+ +G Y P PY+I + +D +
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTI 210
Query: 129 QHFDLRSDS 137
+ +D ++ S
Sbjct: 211 KIWDYQTKS 219
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 278 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 333
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 334 TCGIEKTVKLW 344
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
H + ++ + T +++SGSDD V W+W++ GH + P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-K 151
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVY-KLAVEPGSPYIIYSCGEDGFV 128
D + D V++ + + T G+ +G Y P PY+I + +D +
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTI 210
Query: 129 QHFDLRSDS 137
+ +D ++ S
Sbjct: 211 KIWDYQTKS 219
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 278 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 333
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 334 TCGIEKTVKLW 344
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 629 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 688
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 689 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 717
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 660 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 719
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 720 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 748
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 218 ITGLAYSNTSELLISYNDE-----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR 272
++G TSE L ++D +V L K + G PL ++P+ Q E P++
Sbjct: 631 LSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIELPELPQPES 690
Query: 273 NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 304
Q V PN + S+ GH+ W++
Sbjct: 691 AGQLWLTVRVVQPN---ATAWSEAGHISAWQQ 719
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
H + ++ + T +++SGSDD V W+W++ GH + P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-K 151
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVY-KLAVEPGSPYIIYSCGEDGFV 128
D + D V++ + + T G+ +G Y P PY+I + +D +
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTI 210
Query: 129 QHFDLRSDS 137
+ +D ++ S
Sbjct: 211 KIWDYQTKS 219
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 278 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 333
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 334 TCGIEKTVKLW 344
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 342
F P+ E ++S S L IW K G R ++G R V + + ++ T++
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Query: 343 LW 344
LW
Sbjct: 204 LW 205
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H + ++F +G+ L+S S D + W KD + L GH + T I
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATV--TDIAIIDR 189
Query: 71 DRKIITSSADGQVRL 85
R ++++S DG +RL
Sbjct: 190 GRNVLSASLDGTIRL 204
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 283 FGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 342
F P+ E ++S S L IW K G R ++G R V + + ++ T++
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Query: 343 LW 344
LW
Sbjct: 207 LW 208
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 11 HGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFTD 70
H + ++F +G+ L+S S D + W KD + L GH + T I
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT-LIGHRATV--TDIAIIDR 192
Query: 71 DRKIITSSADGQVRL 85
R ++++S DG +RL
Sbjct: 193 GRNVLSASLDGTIRL 207
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNI 60
H V ++ FN +G+ L S D + FWD K +E+ + L+ H D+I
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK-TKERITTLNMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 12 GHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNI 60
H V ++ FN +G+ L S D + FWD K +E+ + L+ H D+I
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK-TKERITTLNMHCDDI 336
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 10 LHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPFT 69
H + ++ + T +++SGSDD V W+W++ GH + P
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP-K 151
Query: 70 DDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQGRVY-KLAVEPGSPYIIYSCGEDGFV 128
D + D V++ + + T G+ +G Y P PY+I + +D +
Sbjct: 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDLTI 210
Query: 129 QHFDLRSDS 137
+ +D ++ S
Sbjct: 211 KIWDYQTKS 219
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 278 KGVNFFG----PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFA 333
+GVN+ P+ Y+++ SD + IW + V + G V+ HP +P+
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 334 TCGIEKTVKLW 344
+ + T+K+W
Sbjct: 245 SGSEDGTLKIW 255
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 9 KLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTRIMPF 68
+LH H+ CV +++F G + VS D L+ W+ + S ++ I
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLN--AWRTPYGASIFQSKESSSVLSCDIS-- 315
Query: 69 TDDRKIITSSADGQVRLGQIF 89
DD+ I+T S D + + ++
Sbjct: 316 VDDKYIVTGSGDKKATVYEVI 336
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 263 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 322
+ P+V GH + + + F G ++SGSD L +W GK +R +VG V
Sbjct: 109 KSPKVLKGH-DDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
Query: 323 LEPHPHIPMFATCGIEKTVKLW 344
+ +I + + ++T+K+W
Sbjct: 165 SQMRDNIIISGS--TDRTLKVW 184
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 5 NLCGKLHGHKGCVNAVEFNSTGDFLVSGSDDKLVIFWDWKDRREKFSYLSGHLDNIFQTR 64
N L GH+ + +E + LVSG+ D V WD K + L G N Q+
Sbjct: 310 NCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKT-GQCLQTLQG--PNKHQSA 364
Query: 65 IMPFTDDRK-IITSSADGQVRL 85
+ ++ +ITSS DG V+L
Sbjct: 365 VTCLQFNKNFVITSSDDGTVKL 386
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 4 INLCGK----LHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSG--H 56
+N+ GK L HK V V N D FL + S D+ V WD + R K S+L H
Sbjct: 236 LNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295
Query: 57 LDNIFQTRIMPFTDDRKIITSSADGQVRL 85
+ P D +++T+ ++R+
Sbjct: 296 RHPVNAACFSP--DGARLLTTDQKSEIRV 322
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 4 INLCGK----LHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYLSG--H 56
+N+ GK L HK V V N D FL + S D+ V WD + R K S+L H
Sbjct: 236 LNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295
Query: 57 LDNIFQTRIMPFTDDRKIITSSADGQVRL 85
+ P D +++T+ ++R+
Sbjct: 296 RHPVNAACFSP--DGARLLTTDQKSEIRV 322
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 4 INLCGK----LHGHKGCVNAVEFNSTGD-FLVSGSDDKLVIFWDWKDRREKFSYL 53
+N+ GK L HK V V N D FL + S D+ V WD + R K S+L
Sbjct: 237 LNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 291
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 6 LCGKLHGHKGCVNAVEFNST--GDFLVSGSDDKLVIFW-DWKDRREKFSYLSGHLDNIFQ 62
L L GH+G V V + G+ L S S D+ VI W + EK +GH ++
Sbjct: 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNS 108
Query: 63 TRIMPFTDDRKIITSSADGQVRLGQIFEDGRMDTKRLGKHQ-----GRVYKLAVEPGS 115
P + S+DG + L +G+ + K++ + AV PGS
Sbjct: 109 VCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 95 DTKRLGKHQGRVYKLAVEPGSPYIIYSCGEDGFVQHFDLRSDSATRLFYCSSFSENSKQP 154
D +R+ H G + L +EP + S G DG + +DL + S + C + +
Sbjct: 37 DVERI--HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH 94
Query: 155 MNSIRLNAIVID--PRNPNYFAVGGSDEYARVYD 186
+ R + + P + F D+ +V+D
Sbjct: 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128
>pdb|2YYV|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
pdb|2YYV|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
pdb|2YZO|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
pdb|2YZO|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermotoga Maritima
Length = 227
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 244 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 289
N G P+ E L+K++E + G RN+Q KG N EY
Sbjct: 35 NGASGVIPVKTIEEALEKKKEGVLICGERNAQKPKGFNLGNSPLEY 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,091,426
Number of Sequences: 62578
Number of extensions: 611063
Number of successful extensions: 1721
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 320
length of query: 439
length of database: 14,973,337
effective HSP length: 102
effective length of query: 337
effective length of database: 8,590,381
effective search space: 2894958397
effective search space used: 2894958397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)